Query 013392
Match_columns 444
No_of_seqs 134 out of 1317
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 03:23:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 2.3E-62 5.1E-67 418.2 29.3 350 14-442 57-406 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 9.2E-61 2E-65 435.6 31.4 355 19-441 92-446 (519)
3 KOG0348 ATP-dependent RNA heli 100.0 1.5E-60 3.3E-65 422.4 28.7 417 13-441 131-552 (708)
4 PRK04837 ATP-dependent RNA hel 100.0 3.5E-58 7.6E-63 434.2 38.1 355 15-441 5-360 (423)
5 PRK10590 ATP-dependent RNA hel 100.0 1.6E-57 3.5E-62 432.0 37.4 351 18-442 1-351 (456)
6 COG0513 SrmB Superfamily II DN 100.0 3.5E-57 7.6E-62 431.0 36.7 349 18-441 29-378 (513)
7 PTZ00110 helicase; Provisional 100.0 5.6E-57 1.2E-61 434.0 37.7 353 17-441 129-482 (545)
8 PRK11776 ATP-dependent RNA hel 100.0 9.7E-57 2.1E-61 429.0 38.0 345 17-441 3-347 (460)
9 PRK04537 ATP-dependent RNA hel 100.0 2E-56 4.3E-61 431.4 37.4 353 18-441 9-362 (572)
10 PLN00206 DEAD-box ATP-dependen 100.0 3.5E-56 7.5E-61 427.6 37.8 354 16-441 119-473 (518)
11 PRK11634 ATP-dependent RNA hel 100.0 3.4E-56 7.3E-61 431.8 37.5 345 18-441 6-350 (629)
12 PRK11192 ATP-dependent RNA hel 100.0 4E-55 8.6E-60 415.5 38.9 348 18-441 1-350 (434)
13 KOG0328 Predicted ATP-dependen 100.0 2E-56 4.3E-61 366.0 24.7 350 12-441 21-371 (400)
14 KOG0345 ATP-dependent RNA heli 100.0 2.1E-55 4.6E-60 384.3 31.6 356 17-441 3-362 (567)
15 PRK01297 ATP-dependent RNA hel 100.0 2E-54 4.3E-59 413.9 39.4 355 15-441 84-440 (475)
16 KOG0338 ATP-dependent RNA heli 100.0 4.7E-56 1E-60 391.8 25.6 348 17-440 180-530 (691)
17 KOG0342 ATP-dependent RNA heli 100.0 1.4E-55 3E-60 388.0 28.0 357 14-441 78-435 (543)
18 KOG0333 U5 snRNP-like RNA heli 100.0 3E-55 6.5E-60 388.0 29.8 368 15-441 242-622 (673)
19 KOG0340 ATP-dependent RNA heli 100.0 3.5E-55 7.7E-60 369.9 25.6 351 17-441 6-359 (442)
20 PTZ00424 helicase 45; Provisio 100.0 4E-53 8.6E-58 399.6 38.6 344 18-441 28-372 (401)
21 KOG0343 RNA Helicase [RNA proc 100.0 2.7E-54 5.9E-59 384.1 27.6 353 17-441 68-420 (758)
22 KOG0326 ATP-dependent RNA heli 100.0 3E-55 6.6E-60 365.1 17.4 346 15-441 82-427 (459)
23 KOG0346 RNA helicase [RNA proc 100.0 9.1E-54 2E-58 370.9 25.4 359 13-441 14-408 (569)
24 KOG0336 ATP-dependent RNA heli 100.0 5.9E-53 1.3E-57 362.8 23.1 354 15-441 216-570 (629)
25 KOG0335 ATP-dependent RNA heli 100.0 1.3E-51 2.8E-56 369.1 26.6 356 19-440 75-441 (482)
26 KOG0341 DEAD-box protein abstr 100.0 1.6E-52 3.4E-57 357.8 15.6 349 18-440 170-525 (610)
27 TIGR03817 DECH_helic helicase/ 100.0 6.4E-48 1.4E-52 381.5 34.4 361 24-440 20-383 (742)
28 KOG0347 RNA helicase [RNA proc 100.0 1.1E-49 2.5E-54 354.5 18.9 357 15-440 178-567 (731)
29 KOG0339 ATP-dependent RNA heli 100.0 8.1E-48 1.8E-52 339.5 27.3 351 17-441 222-573 (731)
30 KOG0332 ATP-dependent RNA heli 100.0 2.2E-48 4.8E-53 330.8 21.8 350 9-440 81-440 (477)
31 TIGR00614 recQ_fam ATP-depende 100.0 2.4E-46 5.3E-51 356.5 30.4 316 33-440 3-330 (470)
32 KOG0327 Translation initiation 100.0 5.4E-47 1.2E-51 324.9 22.8 341 19-441 27-368 (397)
33 KOG0334 RNA helicase [RNA proc 100.0 3.3E-47 7.3E-52 364.6 24.1 351 18-441 365-718 (997)
34 PLN03137 ATP-dependent DNA hel 100.0 1.8E-45 3.8E-50 361.8 33.8 331 17-440 434-784 (1195)
35 KOG0337 ATP-dependent RNA heli 100.0 9.5E-47 2.1E-51 325.7 21.5 350 15-442 18-367 (529)
36 KOG0350 DEAD-box ATP-dependent 100.0 7E-46 1.5E-50 326.9 25.4 369 17-441 126-538 (620)
37 KOG4284 DEAD box protein [Tran 100.0 4.5E-46 9.7E-51 337.4 20.9 351 15-441 22-377 (980)
38 PRK02362 ski2-like helicase; P 100.0 7.6E-45 1.6E-49 364.0 31.5 364 18-442 1-394 (737)
39 PRK11057 ATP-dependent DNA hel 100.0 1.3E-44 2.8E-49 353.3 32.2 323 23-440 7-340 (607)
40 PRK13767 ATP-dependent helicas 100.0 5.4E-44 1.2E-48 360.7 33.4 358 25-440 18-395 (876)
41 TIGR01389 recQ ATP-dependent D 100.0 1.3E-43 2.7E-48 347.8 31.0 314 31-439 3-327 (591)
42 PRK00254 ski2-like helicase; P 100.0 7.9E-43 1.7E-47 348.6 32.3 354 18-439 1-384 (720)
43 COG1111 MPH1 ERCC4-like helica 100.0 2.9E-43 6.4E-48 312.8 25.6 367 39-441 13-479 (542)
44 TIGR00580 mfd transcription-re 100.0 2.1E-42 4.5E-47 345.2 33.2 320 25-440 436-767 (926)
45 COG1201 Lhr Lhr-like helicases 100.0 4.2E-42 9.1E-47 331.4 31.7 344 25-437 8-356 (814)
46 PRK01172 ski2-like helicase; P 100.0 6.4E-42 1.4E-46 340.8 31.7 358 18-442 1-375 (674)
47 KOG0344 ATP-dependent RNA heli 100.0 1E-42 2.2E-47 314.1 21.2 346 23-440 141-492 (593)
48 PRK10917 ATP-dependent DNA hel 100.0 1.5E-40 3.3E-45 328.0 33.4 320 27-440 248-586 (681)
49 PRK10689 transcription-repair 100.0 1.9E-40 4.1E-45 338.2 33.5 319 27-440 587-916 (1147)
50 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.1E-39 2.5E-44 316.4 32.2 330 29-436 4-383 (844)
51 TIGR00643 recG ATP-dependent D 100.0 2.3E-39 5E-44 317.8 34.2 322 28-440 223-563 (630)
52 PHA02558 uvsW UvsW helicase; P 100.0 3.3E-39 7.2E-44 309.0 25.3 332 41-443 114-451 (501)
53 PRK09751 putative ATP-dependen 100.0 2.6E-38 5.7E-43 324.1 30.6 347 61-441 1-381 (1490)
54 COG0514 RecQ Superfamily II DN 100.0 1.4E-38 3E-43 296.3 25.5 322 28-440 4-334 (590)
55 KOG0354 DEAD-box like helicase 100.0 4.9E-39 1.1E-43 302.7 22.3 367 41-440 62-526 (746)
56 COG1202 Superfamily II helicas 100.0 1.3E-38 2.9E-43 285.7 20.2 350 10-440 186-550 (830)
57 KOG0329 ATP-dependent RNA heli 100.0 6.6E-39 1.4E-43 259.5 15.1 312 17-441 41-353 (387)
58 COG1204 Superfamily II helicas 100.0 4E-37 8.7E-42 301.2 28.3 354 25-442 16-405 (766)
59 PRK09401 reverse gyrase; Revie 100.0 4.6E-36 1E-40 306.9 32.2 323 28-429 68-430 (1176)
60 COG1205 Distinct helicase fami 100.0 3.7E-36 8.1E-41 298.6 28.6 347 28-439 58-418 (851)
61 TIGR00603 rad25 DNA repair hel 100.0 4.3E-37 9.4E-42 295.5 20.2 323 41-436 255-593 (732)
62 PRK13766 Hef nuclease; Provisi 100.0 8E-36 1.7E-40 302.9 28.4 355 41-440 15-476 (773)
63 PHA02653 RNA helicase NPH-II; 100.0 6.9E-36 1.5E-40 288.7 25.7 311 44-440 167-511 (675)
64 PRK12898 secA preprotein trans 100.0 1.5E-35 3.3E-40 281.6 27.4 338 31-441 94-584 (656)
65 TIGR01587 cas3_core CRISPR-ass 100.0 2.3E-35 5E-40 273.9 26.5 294 58-434 1-323 (358)
66 TIGR01970 DEAH_box_HrpB ATP-de 100.0 7.3E-35 1.6E-39 288.4 29.6 307 45-440 6-333 (819)
67 PRK14701 reverse gyrase; Provi 100.0 1.2E-34 2.7E-39 302.4 31.6 332 27-436 66-449 (1638)
68 PRK11664 ATP-dependent RNA hel 100.0 6.9E-35 1.5E-39 289.3 27.2 307 45-440 9-336 (812)
69 COG1061 SSL2 DNA or RNA helica 100.0 1.5E-35 3.2E-40 278.0 20.5 332 41-435 36-382 (442)
70 TIGR03714 secA2 accessory Sec 100.0 2E-34 4.3E-39 277.2 27.5 332 42-441 69-535 (762)
71 PRK09200 preprotein translocas 100.0 5.7E-34 1.2E-38 276.8 27.6 340 30-441 68-539 (790)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 5.3E-33 1.1E-37 254.7 28.4 314 45-428 1-357 (357)
73 TIGR00963 secA preprotein tran 100.0 5.4E-33 1.2E-37 265.6 29.2 340 29-441 45-515 (745)
74 COG1200 RecG RecG-like helicas 100.0 1.5E-32 3.3E-37 255.2 29.1 331 23-439 245-587 (677)
75 TIGR01054 rgy reverse gyrase. 100.0 3.6E-32 7.7E-37 278.9 32.3 310 27-416 65-410 (1171)
76 PRK04914 ATP-dependent helicas 100.0 3.2E-33 7E-38 278.2 22.4 352 42-441 153-601 (956)
77 KOG0952 DNA/RNA helicase MER3/ 100.0 2.7E-32 6E-37 260.7 23.8 356 35-442 104-488 (1230)
78 KOG0351 ATP-dependent DNA heli 100.0 3.2E-32 7E-37 268.5 24.4 326 27-440 250-589 (941)
79 KOG0349 Putative DEAD-box RNA 100.0 3.3E-32 7.2E-37 236.8 19.7 315 92-442 285-614 (725)
80 KOG0352 ATP-dependent DNA heli 100.0 5.5E-32 1.2E-36 235.0 18.1 328 27-439 5-358 (641)
81 COG1197 Mfd Transcription-repa 100.0 1.6E-30 3.5E-35 255.2 30.2 325 23-441 577-911 (1139)
82 PRK11448 hsdR type I restricti 100.0 2.7E-31 5.9E-36 270.4 22.7 361 41-443 413-814 (1123)
83 PRK05580 primosome assembly pr 100.0 1.3E-30 2.9E-35 256.4 25.8 329 41-438 144-544 (679)
84 PRK09694 helicase Cas3; Provis 100.0 1.2E-29 2.7E-34 251.2 30.1 338 41-433 286-665 (878)
85 cd00268 DEADc DEAD-box helicas 100.0 1.7E-29 3.8E-34 215.5 24.4 202 20-243 1-202 (203)
86 KOG0947 Cytoplasmic exosomal R 100.0 1.3E-29 2.8E-34 239.9 21.5 374 29-442 286-720 (1248)
87 KOG0353 ATP-dependent DNA heli 100.0 1.7E-29 3.7E-34 216.6 20.1 329 22-439 75-463 (695)
88 TIGR00595 priA primosomal prot 100.0 1.1E-29 2.5E-34 241.0 20.7 306 60-437 1-375 (505)
89 PRK11131 ATP-dependent RNA hel 100.0 2.5E-28 5.4E-33 246.9 27.4 304 43-440 76-408 (1294)
90 PRK13104 secA preprotein trans 100.0 5E-28 1.1E-32 234.9 28.0 371 33-441 75-585 (896)
91 KOG0951 RNA helicase BRR2, DEA 100.0 1.8E-28 3.9E-33 237.9 22.4 367 23-442 294-699 (1674)
92 COG4581 Superfamily II RNA hel 100.0 5.2E-28 1.1E-32 237.5 23.6 368 34-441 113-533 (1041)
93 PLN03142 Probable chromatin-re 100.0 3E-28 6.5E-33 243.7 21.5 348 41-438 169-592 (1033)
94 PRK12906 secA preprotein trans 100.0 9.2E-28 2E-32 231.9 23.8 377 29-441 69-551 (796)
95 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.3E-27 5E-32 240.8 27.1 303 47-440 73-401 (1283)
96 PRK12904 preprotein translocas 100.0 6.4E-27 1.4E-31 227.1 27.7 338 31-441 72-571 (830)
97 COG4098 comFA Superfamily II D 100.0 1.1E-26 2.4E-31 196.9 24.0 296 41-432 97-403 (441)
98 KOG0948 Nuclear exosomal RNA h 100.0 1.2E-27 2.5E-32 221.5 17.8 364 35-440 124-534 (1041)
99 COG4096 HsdR Type I site-speci 100.0 7.4E-27 1.6E-31 220.4 23.1 337 41-430 165-525 (875)
100 TIGR00348 hsdR type I site-spe 99.9 1.1E-26 2.4E-31 228.7 18.6 355 42-443 239-647 (667)
101 PRK13107 preprotein translocas 99.9 1.1E-25 2.4E-30 218.0 24.8 373 32-441 74-589 (908)
102 KOG0950 DNA polymerase theta/e 99.9 1.1E-26 2.4E-31 221.5 17.0 369 25-441 207-607 (1008)
103 PRK12899 secA preprotein trans 99.9 6.7E-25 1.5E-29 212.9 27.6 151 21-184 65-230 (970)
104 PF00270 DEAD: DEAD/DEAH box h 99.9 3.3E-25 7.1E-30 183.6 20.5 166 43-230 1-167 (169)
105 COG1203 CRISPR-associated heli 99.9 3.4E-24 7.4E-29 213.3 21.9 324 42-439 196-546 (733)
106 KOG0949 Predicted helicase, DE 99.9 3.7E-24 8.1E-29 203.7 19.8 169 38-233 509-679 (1330)
107 KOG1123 RNA polymerase II tran 99.9 2E-25 4.3E-30 198.2 9.6 351 9-432 273-636 (776)
108 COG1198 PriA Primosomal protei 99.9 2.1E-23 4.5E-28 201.0 24.3 331 41-437 198-597 (730)
109 COG0556 UvrB Helicase subunit 99.9 1.4E-23 3E-28 188.3 19.7 123 297-439 426-553 (663)
110 KOG0385 Chromatin remodeling c 99.9 2.1E-23 4.6E-28 194.2 20.4 351 41-441 167-595 (971)
111 KOG0392 SNF2 family DNA-depend 99.9 5.7E-23 1.2E-27 199.7 17.4 359 42-439 976-1448(1549)
112 COG1110 Reverse gyrase [DNA re 99.9 1.8E-21 3.9E-26 187.3 27.3 304 27-415 69-417 (1187)
113 PRK12326 preprotein translocas 99.9 1.5E-21 3.3E-26 185.1 26.0 339 30-441 68-545 (764)
114 KOG0387 Transcription-coupled 99.9 1.7E-22 3.7E-27 189.0 18.3 349 41-438 205-651 (923)
115 KOG0390 DNA repair protein, SN 99.9 2.5E-21 5.4E-26 185.6 23.3 355 41-438 238-700 (776)
116 PRK12900 secA preprotein trans 99.9 1.2E-21 2.7E-26 191.0 21.1 124 297-441 578-709 (1025)
117 TIGR00631 uvrb excinuclease AB 99.9 3.5E-20 7.7E-25 180.6 30.0 122 299-440 424-550 (655)
118 COG4889 Predicted helicase [Ge 99.9 1.8E-23 4E-28 196.9 6.6 382 18-430 140-572 (1518)
119 COG1643 HrpA HrpA-like helicas 99.9 1E-20 2.2E-25 185.4 25.3 308 42-437 51-381 (845)
120 PRK13103 secA preprotein trans 99.9 6.6E-21 1.4E-25 185.3 23.4 135 33-182 75-215 (913)
121 TIGR01407 dinG_rel DnaQ family 99.9 6.2E-20 1.4E-24 186.9 26.8 74 27-111 233-310 (850)
122 KOG0922 DEAH-box RNA helicase 99.9 6.7E-20 1.5E-24 169.7 23.5 313 43-437 53-384 (674)
123 smart00487 DEXDc DEAD-like hel 99.9 1.1E-19 2.3E-24 155.1 22.2 186 37-246 4-191 (201)
124 KOG0389 SNF2 family DNA-depend 99.9 2.3E-21 5E-26 181.4 12.6 348 38-434 397-877 (941)
125 PRK12903 secA preprotein trans 99.9 2E-19 4.3E-24 173.3 24.4 338 31-441 69-537 (925)
126 KOG1000 Chromatin remodeling p 99.9 8.3E-20 1.8E-24 162.5 19.9 340 39-442 196-600 (689)
127 PRK05298 excinuclease ABC subu 99.8 7.1E-19 1.5E-23 173.0 27.8 123 299-441 428-555 (652)
128 KOG0384 Chromodomain-helicase 99.8 1.6E-20 3.5E-25 183.4 13.9 347 40-437 369-803 (1373)
129 KOG0920 ATP-dependent RNA heli 99.8 3.3E-18 7.2E-23 167.2 23.5 342 42-440 174-541 (924)
130 KOG4150 Predicted ATP-dependen 99.8 1.9E-19 4.2E-24 162.8 13.6 341 35-443 280-640 (1034)
131 CHL00122 secA preprotein trans 99.8 7.7E-18 1.7E-22 163.4 24.3 138 30-182 66-209 (870)
132 KOG0923 mRNA splicing factor A 99.8 1.3E-17 2.9E-22 153.6 21.8 319 39-439 263-602 (902)
133 PF04851 ResIII: Type III rest 99.8 1.8E-18 3.8E-23 145.4 14.2 154 41-226 3-183 (184)
134 PRK07246 bifunctional ATP-depe 99.8 1.1E-16 2.3E-21 161.0 28.8 110 304-435 634-776 (820)
135 PRK12902 secA preprotein trans 99.8 6.1E-17 1.3E-21 157.0 25.7 137 31-182 76-218 (939)
136 cd00079 HELICc Helicase superf 99.8 1.7E-18 3.7E-23 136.8 12.3 119 301-438 12-130 (131)
137 KOG0924 mRNA splicing factor A 99.8 3.1E-17 6.8E-22 151.5 19.8 318 38-437 353-691 (1042)
138 KOG0926 DEAH-box RNA helicase 99.8 9.8E-17 2.1E-21 150.8 20.6 334 47-438 262-699 (1172)
139 PF00271 Helicase_C: Helicase 99.8 1.8E-18 4E-23 122.5 6.5 72 360-431 7-78 (78)
140 cd00046 DEXDc DEAD-like helica 99.8 9.5E-17 2.1E-21 128.8 17.3 144 57-225 1-144 (144)
141 KOG0925 mRNA splicing factor A 99.7 2.5E-16 5.3E-21 140.4 20.0 340 9-439 16-383 (699)
142 KOG0953 Mitochondrial RNA heli 99.7 1.8E-16 3.9E-21 143.5 14.6 269 56-443 191-473 (700)
143 KOG0388 SNF2 family DNA-depend 99.7 2.9E-16 6.3E-21 145.8 15.9 118 299-435 1026-1144(1185)
144 TIGR03117 cas_csf4 CRISPR-asso 99.7 6.6E-14 1.4E-18 134.8 30.0 60 51-117 11-70 (636)
145 KOG4439 RNA polymerase II tran 99.7 4.2E-16 9.2E-21 144.7 13.5 122 297-436 725-849 (901)
146 PRK08074 bifunctional ATP-depe 99.7 1.9E-14 4.1E-19 147.6 26.5 114 304-433 738-883 (928)
147 KOG0386 Chromatin remodeling c 99.7 1.4E-16 3.1E-21 153.3 8.8 348 41-438 394-831 (1157)
148 KOG0391 SNF2 family DNA-depend 99.7 2.6E-15 5.5E-20 146.2 17.0 117 301-436 1260-1378(1958)
149 PRK12901 secA preprotein trans 99.7 6.9E-15 1.5E-19 144.4 19.9 124 297-441 608-739 (1112)
150 COG0610 Type I site-specific r 99.7 6.4E-15 1.4E-19 150.1 20.0 353 57-443 274-649 (962)
151 KOG0951 RNA helicase BRR2, DEA 99.6 9E-15 1.9E-19 143.9 17.4 348 5-439 1112-1490(1674)
152 COG1199 DinG Rad3-related DNA 99.6 1.3E-13 2.7E-18 138.4 25.3 72 37-116 11-86 (654)
153 smart00490 HELICc helicase sup 99.6 1.6E-15 3.5E-20 108.9 7.7 72 360-431 11-82 (82)
154 KOG1015 Transcription regulato 99.6 2.3E-14 4.9E-19 137.2 16.6 138 298-437 1123-1269(1567)
155 TIGR00604 rad3 DNA repair heli 99.6 3.6E-13 7.9E-18 135.1 26.0 74 37-116 6-83 (705)
156 TIGR02562 cas3_yersinia CRISPR 99.6 8.4E-14 1.8E-18 137.6 19.1 100 321-434 758-883 (1110)
157 PRK14873 primosome assembly pr 99.6 6.1E-14 1.3E-18 136.9 17.8 300 60-438 164-534 (665)
158 PRK11747 dinG ATP-dependent DN 99.6 5.2E-12 1.1E-16 125.8 28.2 108 303-432 520-663 (697)
159 KOG1002 Nucleotide excision re 99.5 4E-13 8.6E-18 120.4 17.7 119 299-434 618-738 (791)
160 PF06862 DUF1253: Protein of u 99.5 1.5E-11 3.2E-16 112.8 24.8 290 92-427 36-393 (442)
161 COG0553 HepA Superfamily II DN 99.5 3.8E-13 8.3E-18 140.6 16.0 117 301-436 692-813 (866)
162 PF07652 Flavi_DEAD: Flaviviru 99.5 2.5E-13 5.5E-18 103.2 7.9 138 55-229 3-140 (148)
163 PF02399 Herpes_ori_bp: Origin 99.4 8.5E-12 1.9E-16 120.5 19.7 311 59-433 52-379 (824)
164 PF00176 SNF2_N: SNF2 family N 99.4 1.5E-12 3.3E-17 118.4 12.5 158 45-227 1-174 (299)
165 KOG2340 Uncharacterized conser 99.4 2.7E-11 5.9E-16 109.8 15.8 350 40-432 215-653 (698)
166 COG0653 SecA Preprotein transl 99.3 1.4E-11 3.1E-16 119.7 13.3 360 38-440 78-542 (822)
167 smart00488 DEXDc2 DEAD-like he 99.3 4.9E-11 1.1E-15 106.1 13.8 76 37-116 5-84 (289)
168 smart00489 DEXDc3 DEAD-like he 99.3 4.9E-11 1.1E-15 106.1 13.8 76 37-116 5-84 (289)
169 KOG1016 Predicted DNA helicase 99.2 1.5E-09 3.2E-14 102.9 20.1 122 318-439 718-843 (1387)
170 PF07517 SecA_DEAD: SecA DEAD- 99.2 5.9E-10 1.3E-14 96.3 15.3 140 30-184 67-212 (266)
171 KOG0952 DNA/RNA helicase MER3/ 98.9 2.9E-10 6.4E-15 111.2 1.3 196 7-227 898-1095(1230)
172 PRK15483 type III restriction- 98.9 3.8E-08 8.1E-13 98.6 13.7 45 386-430 501-545 (986)
173 PF13872 AAA_34: P-loop contai 98.8 6.9E-08 1.5E-12 83.7 12.1 157 42-228 38-223 (303)
174 PF02562 PhoH: PhoH-like prote 98.7 5.7E-08 1.2E-12 80.6 8.1 59 39-104 2-60 (205)
175 COG3587 Restriction endonuclea 98.7 1.8E-06 4E-11 83.7 17.7 46 385-430 482-527 (985)
176 KOG1001 Helicase-like transcri 98.6 8.5E-08 1.8E-12 93.8 6.4 120 299-436 520-641 (674)
177 PF12340 DUF3638: Protein of u 98.6 8.4E-07 1.8E-11 74.3 10.9 129 18-158 3-144 (229)
178 KOG0921 Dosage compensation co 98.5 2.2E-06 4.8E-11 83.4 13.3 111 317-438 641-769 (1282)
179 TIGR00596 rad1 DNA repair prot 98.5 4E-07 8.7E-12 91.2 8.5 71 141-227 4-74 (814)
180 PF13604 AAA_30: AAA domain; P 98.4 1.6E-06 3.5E-11 72.8 9.9 63 41-112 1-65 (196)
181 PRK10536 hypothetical protein; 98.4 9.2E-06 2E-10 69.5 12.5 46 38-83 56-101 (262)
182 PF09848 DUF2075: Uncharacteri 98.3 4.9E-06 1.1E-10 77.0 10.5 96 58-184 3-98 (352)
183 KOG1802 RNA helicase nonsense 98.3 4.3E-06 9.3E-11 78.9 8.8 75 35-117 404-478 (935)
184 PF13307 Helicase_C_2: Helicas 98.2 1.6E-06 3.4E-11 70.8 5.3 99 318-433 8-140 (167)
185 PF13245 AAA_19: Part of AAA d 98.2 8.2E-06 1.8E-10 56.3 7.5 60 49-113 2-62 (76)
186 KOG1132 Helicase of the DEAD s 98.2 8.9E-06 1.9E-10 79.4 9.6 86 32-118 13-135 (945)
187 KOG1803 DNA helicase [Replicat 98.2 1.3E-05 2.8E-10 75.3 9.8 65 41-114 185-250 (649)
188 PF13086 AAA_11: AAA domain; P 98.1 8.4E-06 1.8E-10 71.1 8.2 73 42-115 2-75 (236)
189 PRK10875 recD exonuclease V su 98.1 5.8E-05 1.3E-09 74.0 14.2 86 27-117 137-223 (615)
190 TIGR01447 recD exodeoxyribonuc 98.1 6.2E-05 1.3E-09 73.7 13.8 134 43-199 147-285 (586)
191 TIGR01448 recD_rel helicase, p 98.1 8.6E-05 1.9E-09 74.9 14.5 69 33-109 316-384 (720)
192 COG1875 NYN ribonuclease and A 97.8 0.00029 6.4E-09 62.5 10.7 66 35-106 222-289 (436)
193 PF13401 AAA_22: AAA domain; P 97.7 0.00028 6.1E-09 55.1 9.5 26 55-80 3-28 (131)
194 KOG1805 DNA replication helica 97.7 0.00021 4.6E-09 70.9 10.4 125 39-182 667-809 (1100)
195 PF00580 UvrD-helicase: UvrD/R 97.7 0.00013 2.8E-09 66.8 8.3 124 42-179 1-125 (315)
196 PRK13889 conjugal transfer rel 97.7 0.00058 1.2E-08 70.5 12.8 61 38-108 344-405 (988)
197 TIGR00376 DNA helicase, putati 97.6 0.00019 4.2E-09 71.3 8.7 66 41-115 157-223 (637)
198 PRK08181 transposase; Validate 97.6 0.0012 2.5E-08 58.1 11.9 58 42-109 88-149 (269)
199 PRK06526 transposase; Provisio 97.6 0.00041 8.9E-09 60.6 8.8 31 51-81 93-123 (254)
200 TIGR02768 TraA_Ti Ti-type conj 97.6 0.0016 3.5E-08 66.2 14.2 62 38-109 350-412 (744)
201 PRK14722 flhF flagellar biosyn 97.5 0.0012 2.7E-08 60.5 11.8 26 56-81 137-162 (374)
202 PHA02533 17 large terminase pr 97.5 0.0013 2.8E-08 63.8 12.4 139 38-198 57-196 (534)
203 PRK04296 thymidine kinase; Pro 97.5 0.00032 7E-09 58.6 7.2 35 58-101 4-38 (190)
204 KOG1131 RNA polymerase II tran 97.5 0.0012 2.6E-08 61.2 10.9 74 37-115 12-89 (755)
205 PRK13826 Dtr system oriT relax 97.5 0.0026 5.7E-08 66.2 14.5 74 25-109 367-441 (1102)
206 COG3421 Uncharacterized protei 97.5 0.00019 4.1E-09 67.5 5.7 116 61-184 2-127 (812)
207 PRK12723 flagellar biosynthesi 97.5 0.0017 3.6E-08 60.2 11.9 124 57-227 175-299 (388)
208 KOG0989 Replication factor C, 97.3 0.0015 3.2E-08 56.8 9.0 37 45-81 40-82 (346)
209 KOG0298 DEAD box-containing he 97.3 0.001 2.2E-08 68.1 8.6 158 55-234 373-559 (1394)
210 PF00448 SRP54: SRP54-type pro 97.3 0.0057 1.2E-07 51.2 11.8 127 59-231 4-131 (196)
211 smart00492 HELICc3 helicase su 97.3 0.0009 2E-08 52.6 6.5 64 370-433 31-128 (141)
212 cd00009 AAA The AAA+ (ATPases 97.3 0.0057 1.2E-07 48.6 11.5 20 56-75 19-38 (151)
213 PF05970 PIF1: PIF1-like helic 97.3 0.001 2.2E-08 61.8 7.8 57 42-107 2-64 (364)
214 PRK06921 hypothetical protein; 97.2 0.013 2.8E-07 51.7 14.3 44 56-108 117-160 (266)
215 smart00491 HELICc2 helicase su 97.2 0.00077 1.7E-08 53.1 5.8 60 374-433 32-129 (142)
216 COG1419 FlhF Flagellar GTP-bin 97.2 0.0053 1.2E-07 56.1 11.7 90 56-181 203-293 (407)
217 COG2256 MGS1 ATPase related to 97.2 0.0017 3.7E-08 58.6 8.3 21 57-77 49-69 (436)
218 KOG1513 Nuclear helicase MOP-3 97.2 0.00034 7.3E-09 67.9 4.0 159 41-226 264-455 (1300)
219 PRK10919 ATP-dependent DNA hel 97.2 0.0019 4.2E-08 65.1 9.5 71 41-118 2-72 (672)
220 PRK11889 flhF flagellar biosyn 97.1 0.0093 2E-07 54.7 12.4 128 57-236 242-374 (436)
221 cd01124 KaiC KaiC is a circadi 97.1 0.012 2.6E-07 49.2 12.4 48 59-116 2-49 (187)
222 KOG0383 Predicted helicase [Ge 97.1 5.3E-05 1.1E-09 73.8 -2.1 79 301-399 615-696 (696)
223 PF00308 Bac_DnaA: Bacterial d 97.1 0.0061 1.3E-07 52.2 10.5 108 58-229 36-144 (219)
224 PRK05707 DNA polymerase III su 97.1 0.0097 2.1E-07 54.2 12.3 41 42-82 4-48 (328)
225 PRK06835 DNA replication prote 97.1 0.013 2.9E-07 53.2 13.1 45 55-109 182-226 (329)
226 PRK11054 helD DNA helicase IV; 97.1 0.0054 1.2E-07 61.6 11.4 72 40-118 195-266 (684)
227 PF13871 Helicase_C_4: Helicas 97.1 0.0011 2.4E-08 57.7 5.6 59 377-435 52-118 (278)
228 PRK00149 dnaA chromosomal repl 97.0 0.0096 2.1E-07 57.3 12.5 47 57-111 149-195 (450)
229 cd01120 RecA-like_NTPases RecA 97.0 0.037 7.9E-07 44.8 14.4 39 59-106 2-40 (165)
230 smart00382 AAA ATPases associa 97.0 0.0021 4.5E-08 50.8 6.6 43 56-107 2-44 (148)
231 PRK07952 DNA replication prote 97.0 0.014 3.1E-07 50.5 11.8 24 57-80 100-123 (244)
232 TIGR02760 TraI_TIGR conjugativ 97.0 0.09 1.9E-06 59.4 20.8 65 38-112 427-493 (1960)
233 TIGR00362 DnaA chromosomal rep 97.0 0.009 1.9E-07 56.7 11.6 36 58-100 138-173 (405)
234 COG1484 DnaC DNA replication p 97.0 0.0063 1.4E-07 53.3 9.7 67 38-114 80-153 (254)
235 PF02456 Adeno_IVa2: Adenoviru 96.9 0.0016 3.5E-08 56.5 5.4 42 59-107 90-131 (369)
236 PRK14088 dnaA chromosomal repl 96.9 0.014 3E-07 55.7 12.2 38 57-101 131-168 (440)
237 PRK05703 flhF flagellar biosyn 96.9 0.018 3.9E-07 54.5 12.8 26 56-81 221-246 (424)
238 COG2805 PilT Tfp pilus assembl 96.8 0.0038 8.3E-08 54.2 6.8 24 59-83 128-151 (353)
239 COG4626 Phage terminase-like p 96.8 0.02 4.4E-07 54.4 12.1 151 38-224 59-224 (546)
240 PRK08727 hypothetical protein; 96.8 0.011 2.3E-07 51.3 9.7 19 57-75 42-60 (233)
241 PF05876 Terminase_GpA: Phage 96.8 0.002 4.4E-08 63.1 5.8 126 41-182 16-147 (557)
242 PLN03025 replication factor C 96.8 0.021 4.5E-07 52.3 11.9 23 57-79 35-57 (319)
243 PRK12377 putative replication 96.8 0.026 5.7E-07 49.0 11.8 24 57-80 102-125 (248)
244 PF05621 TniB: Bacterial TniB 96.8 0.028 6.1E-07 49.6 11.9 111 57-199 62-177 (302)
245 PRK06893 DNA replication initi 96.8 0.011 2.4E-07 51.1 9.4 23 57-79 40-62 (229)
246 PRK08769 DNA polymerase III su 96.8 0.054 1.2E-06 49.0 14.0 43 40-82 3-52 (319)
247 PRK14974 cell division protein 96.8 0.035 7.6E-07 50.5 12.9 52 169-235 222-274 (336)
248 PRK08084 DNA replication initi 96.7 0.018 3.9E-07 49.9 10.6 20 56-75 45-64 (235)
249 PRK08116 hypothetical protein; 96.7 0.022 4.9E-07 50.3 11.2 25 57-82 115-139 (268)
250 COG1435 Tdk Thymidine kinase [ 96.7 0.007 1.5E-07 49.3 7.2 104 58-197 6-109 (201)
251 PRK14712 conjugal transfer nic 96.7 0.02 4.4E-07 62.0 12.6 62 41-109 835-900 (1623)
252 PRK05642 DNA replication initi 96.7 0.018 3.9E-07 49.9 10.2 18 57-74 46-63 (234)
253 TIGR01074 rep ATP-dependent DN 96.7 0.011 2.5E-07 60.0 10.2 70 42-118 2-71 (664)
254 PRK14087 dnaA chromosomal repl 96.7 0.025 5.3E-07 54.1 11.8 49 57-113 142-190 (450)
255 TIGR01075 uvrD DNA helicase II 96.7 0.0059 1.3E-07 62.4 8.1 72 40-118 3-74 (715)
256 KOG0738 AAA+-type ATPase [Post 96.6 0.019 4.1E-07 51.8 9.9 83 15-110 180-286 (491)
257 PHA03368 DNA packaging termina 96.6 0.043 9.3E-07 53.6 12.9 161 27-226 229-391 (738)
258 PF03354 Terminase_1: Phage Te 96.6 0.015 3.3E-07 56.3 10.1 140 44-199 1-150 (477)
259 PRK11773 uvrD DNA-dependent he 96.6 0.0069 1.5E-07 61.9 8.0 72 40-118 8-79 (721)
260 PHA02544 44 clamp loader, smal 96.6 0.034 7.4E-07 50.9 11.7 28 169-196 100-127 (316)
261 TIGR02881 spore_V_K stage V sp 96.6 0.035 7.7E-07 49.1 11.4 22 57-78 43-64 (261)
262 TIGR02785 addA_Gpos recombinat 96.5 0.027 5.8E-07 61.0 12.3 124 42-180 2-126 (1232)
263 PRK14086 dnaA chromosomal repl 96.5 0.024 5.3E-07 55.4 10.7 46 58-111 316-361 (617)
264 KOG0733 Nuclear AAA ATPase (VC 96.5 0.061 1.3E-06 51.6 12.8 65 9-76 499-565 (802)
265 PRK12727 flagellar biosynthesi 96.5 0.063 1.4E-06 51.5 13.0 27 55-81 349-375 (559)
266 PRK12422 chromosomal replicati 96.5 0.028 6E-07 53.6 10.8 41 57-107 142-182 (445)
267 PRK14964 DNA polymerase III su 96.5 0.06 1.3E-06 51.6 12.8 24 57-80 36-59 (491)
268 PRK06964 DNA polymerase III su 96.4 0.072 1.6E-06 48.7 12.6 41 42-82 2-47 (342)
269 TIGR03499 FlhF flagellar biosy 96.4 0.016 3.4E-07 51.8 8.2 25 57-81 195-219 (282)
270 PRK06871 DNA polymerase III su 96.4 0.095 2.1E-06 47.5 13.2 41 42-82 3-50 (325)
271 KOG1133 Helicase of the DEAD s 96.4 0.0053 1.2E-07 59.1 5.2 124 303-440 614-777 (821)
272 cd01122 GP4d_helicase GP4d_hel 96.4 0.073 1.6E-06 47.4 12.4 56 52-116 26-81 (271)
273 PRK13709 conjugal transfer nic 96.4 0.053 1.1E-06 59.8 13.2 66 38-109 965-1032(1747)
274 PHA03333 putative ATPase subun 96.4 0.081 1.8E-06 52.0 13.1 70 42-119 170-242 (752)
275 PF13177 DNA_pol3_delta2: DNA 96.3 0.14 3E-06 41.5 12.6 26 58-83 21-46 (162)
276 PRK09183 transposase/IS protei 96.3 0.044 9.6E-07 48.2 10.3 26 53-78 99-124 (259)
277 PRK13341 recombination factor 96.3 0.037 8.1E-07 55.9 10.9 20 57-76 53-72 (725)
278 TIGR01547 phage_term_2 phage t 96.3 0.039 8.4E-07 52.3 10.6 146 58-236 3-151 (396)
279 PF05496 RuvB_N: Holliday junc 96.3 0.015 3.3E-07 48.8 6.8 19 58-76 52-70 (233)
280 PF00004 AAA: ATPase family as 96.3 0.057 1.2E-06 41.9 9.9 18 59-76 1-18 (132)
281 PRK12323 DNA polymerase III su 96.3 0.061 1.3E-06 52.9 11.6 24 58-81 40-63 (700)
282 PRK14956 DNA polymerase III su 96.3 0.053 1.2E-06 51.5 11.0 21 59-79 43-63 (484)
283 COG3973 Superfamily I DNA and 96.2 0.027 5.9E-07 53.8 8.9 68 46-117 217-284 (747)
284 PRK00411 cdc6 cell division co 96.2 0.092 2E-06 49.7 12.9 21 57-77 56-76 (394)
285 KOG0739 AAA+-type ATPase [Post 96.2 0.14 3E-06 44.7 12.2 53 51-116 156-213 (439)
286 CHL00181 cbbX CbbX; Provisiona 96.2 0.097 2.1E-06 46.8 11.9 24 56-79 59-82 (287)
287 PF13173 AAA_14: AAA domain 96.1 0.1 2.2E-06 40.4 10.5 20 56-75 2-21 (128)
288 PTZ00112 origin recognition co 96.1 0.11 2.4E-06 52.7 12.9 35 43-77 760-802 (1164)
289 PRK13342 recombination factor 96.1 0.059 1.3E-06 51.2 11.0 20 57-76 37-56 (413)
290 TIGR03420 DnaA_homol_Hda DnaA 96.1 0.08 1.7E-06 45.7 11.1 25 55-79 37-61 (226)
291 PRK08939 primosomal protein Dn 96.1 0.14 3.1E-06 46.2 12.8 26 56-81 156-181 (306)
292 PRK06645 DNA polymerase III su 96.1 0.068 1.5E-06 51.7 11.2 24 57-80 44-67 (507)
293 PRK14958 DNA polymerase III su 96.0 0.16 3.4E-06 49.5 13.3 24 58-81 40-63 (509)
294 PRK07764 DNA polymerase III su 96.0 0.16 3.4E-06 52.3 13.8 24 58-81 39-62 (824)
295 PRK07993 DNA polymerase III su 96.0 0.17 3.7E-06 46.3 12.7 41 42-82 3-50 (334)
296 TIGR02880 cbbX_cfxQ probable R 96.0 0.16 3.4E-06 45.5 12.4 22 56-77 58-79 (284)
297 TIGR01073 pcrA ATP-dependent D 96.0 0.027 5.8E-07 57.8 8.3 72 40-118 3-74 (726)
298 PRK06090 DNA polymerase III su 95.9 0.23 4.9E-06 45.0 13.1 41 42-82 4-51 (319)
299 PRK08533 flagellar accessory p 95.9 0.17 3.7E-06 43.7 12.0 52 55-116 23-74 (230)
300 PF05127 Helicase_RecD: Helica 95.9 0.0022 4.7E-08 52.1 0.2 102 60-181 1-102 (177)
301 PRK07003 DNA polymerase III su 95.9 0.26 5.5E-06 49.5 14.2 24 58-81 40-63 (830)
302 PRK08903 DnaA regulatory inact 95.9 0.086 1.9E-06 45.5 10.2 22 55-76 41-62 (227)
303 COG1474 CDC6 Cdc6-related prot 95.9 0.22 4.7E-06 46.2 13.2 24 57-80 43-66 (366)
304 PRK14873 primosome assembly pr 95.9 0.058 1.2E-06 54.0 10.0 96 299-412 170-265 (665)
305 PRK04195 replication factor C 95.9 0.053 1.1E-06 52.7 9.7 21 56-76 39-59 (482)
306 COG0593 DnaA ATPase involved i 95.9 0.078 1.7E-06 49.2 10.1 49 169-231 175-224 (408)
307 PRK12402 replication factor C 95.9 0.12 2.5E-06 47.8 11.6 20 58-77 38-57 (337)
308 PRK14962 DNA polymerase III su 95.9 0.16 3.4E-06 48.9 12.5 21 59-79 39-59 (472)
309 COG1198 PriA Primosomal protei 95.9 0.038 8.1E-07 55.3 8.5 97 296-411 224-320 (730)
310 PRK09111 DNA polymerase III su 95.9 0.15 3.2E-06 50.6 12.5 25 57-81 47-71 (598)
311 PF01695 IstB_IS21: IstB-like 95.8 0.023 5E-07 46.8 6.0 46 53-108 44-89 (178)
312 PRK11823 DNA repair protein Ra 95.8 0.079 1.7E-06 50.7 10.3 59 48-116 67-130 (446)
313 TIGR01243 CDC48 AAA family ATP 95.8 0.097 2.1E-06 53.8 11.6 58 16-76 448-507 (733)
314 PRK14723 flhF flagellar biosyn 95.8 0.061 1.3E-06 54.1 9.5 24 57-80 186-209 (767)
315 PRK14961 DNA polymerase III su 95.7 0.29 6.2E-06 45.7 13.5 21 59-79 41-61 (363)
316 PF14617 CMS1: U3-containing 9 95.7 0.034 7.5E-07 48.0 6.6 88 91-180 124-212 (252)
317 COG1444 Predicted P-loop ATPas 95.6 0.16 3.5E-06 50.8 11.7 142 41-226 214-357 (758)
318 PRK14957 DNA polymerase III su 95.6 0.19 4E-06 49.1 12.0 22 59-80 41-62 (546)
319 PTZ00293 thymidine kinase; Pro 95.6 0.16 3.4E-06 42.7 10.1 38 56-102 4-41 (211)
320 TIGR00595 priA primosomal prot 95.6 0.077 1.7E-06 51.6 9.5 95 299-412 7-101 (505)
321 PRK03992 proteasome-activating 95.6 0.15 3.3E-06 47.9 11.2 20 56-75 165-184 (389)
322 COG0470 HolB ATPase involved i 95.6 0.19 4.2E-06 46.0 11.9 28 56-83 23-51 (325)
323 PRK10917 ATP-dependent DNA hel 95.6 0.065 1.4E-06 54.4 9.1 97 299-411 292-390 (681)
324 cd01121 Sms Sms (bacterial rad 95.6 0.12 2.7E-06 47.9 10.2 59 48-116 69-132 (372)
325 TIGR02760 TraI_TIGR conjugativ 95.6 0.13 2.8E-06 58.2 12.0 61 41-109 1019-1084(1960)
326 PRK12724 flagellar biosynthesi 95.6 0.3 6.6E-06 45.6 12.5 23 58-80 225-247 (432)
327 PRK05973 replicative DNA helic 95.6 0.057 1.2E-06 46.4 7.4 83 22-116 22-114 (237)
328 PRK00771 signal recognition pa 95.5 0.16 3.5E-06 48.1 11.0 22 58-79 97-118 (437)
329 PRK06731 flhF flagellar biosyn 95.5 0.4 8.6E-06 42.3 12.6 23 57-79 76-98 (270)
330 PRK14959 DNA polymerase III su 95.5 0.3 6.4E-06 48.3 12.9 24 58-81 40-63 (624)
331 PRK12726 flagellar biosynthesi 95.5 0.12 2.5E-06 47.6 9.5 25 56-80 206-230 (407)
332 PRK05580 primosome assembly pr 95.5 0.11 2.3E-06 52.7 10.4 96 298-412 171-266 (679)
333 PRK07994 DNA polymerase III su 95.5 0.34 7.3E-06 48.3 13.4 23 59-81 41-63 (647)
334 PTZ00454 26S protease regulato 95.5 0.2 4.4E-06 47.0 11.4 57 16-75 140-198 (398)
335 KOG0991 Replication factor C, 95.5 0.046 9.9E-07 45.8 6.2 21 57-77 49-69 (333)
336 PF03969 AFG1_ATPase: AFG1-lik 95.5 0.1 2.2E-06 48.2 9.3 45 169-228 127-171 (362)
337 PRK14969 DNA polymerase III su 95.5 0.23 5E-06 48.6 12.1 23 58-80 40-62 (527)
338 cd00983 recA RecA is a bacter 95.5 0.04 8.7E-07 49.7 6.4 52 48-108 41-98 (325)
339 COG4962 CpaF Flp pilus assembl 95.4 0.041 8.9E-07 49.2 6.3 61 38-108 154-215 (355)
340 TIGR02688 conserved hypothetic 95.4 0.19 4.1E-06 46.8 10.7 48 31-79 177-232 (449)
341 PRK14949 DNA polymerase III su 95.4 0.22 4.7E-06 51.0 11.8 21 59-79 41-61 (944)
342 TIGR01425 SRP54_euk signal rec 95.3 0.52 1.1E-05 44.4 13.5 34 59-101 103-136 (429)
343 PRK14951 DNA polymerase III su 95.3 0.38 8.2E-06 47.8 13.2 23 59-81 41-63 (618)
344 TIGR03881 KaiC_arch_4 KaiC dom 95.3 0.29 6.2E-06 42.4 11.3 52 55-116 19-70 (229)
345 TIGR02012 tigrfam_recA protein 95.3 0.043 9.4E-07 49.5 6.1 43 56-107 55-97 (321)
346 PRK05563 DNA polymerase III su 95.3 0.65 1.4E-05 45.9 14.7 51 16-79 11-61 (559)
347 PF06745 KaiC: KaiC; InterPro 95.3 0.29 6.3E-06 42.2 11.1 53 55-116 18-70 (226)
348 TIGR03878 thermo_KaiC_2 KaiC d 95.3 0.073 1.6E-06 47.0 7.4 38 55-101 35-72 (259)
349 PRK05896 DNA polymerase III su 95.3 0.36 7.8E-06 47.5 12.6 25 57-81 39-63 (605)
350 PRK06067 flagellar accessory p 95.3 0.33 7.1E-06 42.2 11.4 58 49-116 13-75 (234)
351 PRK13833 conjugal transfer pro 95.2 0.058 1.3E-06 48.8 6.8 57 42-105 129-186 (323)
352 PRK08691 DNA polymerase III su 95.2 0.28 6.1E-06 48.9 11.8 24 57-80 39-62 (709)
353 KOG2228 Origin recognition com 95.2 0.52 1.1E-05 42.1 12.2 59 154-225 123-181 (408)
354 PRK09354 recA recombinase A; P 95.2 0.073 1.6E-06 48.5 7.1 51 48-107 46-102 (349)
355 PRK14960 DNA polymerase III su 95.1 0.16 3.4E-06 50.3 9.7 23 58-80 39-61 (702)
356 PRK14948 DNA polymerase III su 95.1 0.42 9.1E-06 47.8 12.9 57 12-81 7-63 (620)
357 PRK08699 DNA polymerase III su 95.1 0.3 6.6E-06 44.5 11.1 40 42-81 2-46 (325)
358 TIGR02928 orc1/cdc6 family rep 95.1 0.37 8E-06 45.1 12.1 24 57-81 41-64 (365)
359 COG1222 RPT1 ATP-dependent 26S 95.1 0.54 1.2E-05 42.4 12.0 58 15-75 145-204 (406)
360 PRK13894 conjugal transfer ATP 95.1 0.062 1.3E-06 48.7 6.5 57 42-105 133-190 (319)
361 KOG2028 ATPase related to the 95.0 0.086 1.9E-06 47.4 6.9 18 58-75 164-181 (554)
362 PRK11331 5-methylcytosine-spec 95.0 0.13 2.9E-06 48.4 8.6 34 42-75 180-213 (459)
363 PRK14952 DNA polymerase III su 95.0 0.35 7.6E-06 47.7 11.9 23 59-81 38-60 (584)
364 PRK09112 DNA polymerase III su 95.0 0.49 1.1E-05 43.7 12.1 24 58-81 47-70 (351)
365 TIGR00064 ftsY signal recognit 95.0 0.95 2.1E-05 40.2 13.5 35 57-100 73-107 (272)
366 PRK14721 flhF flagellar biosyn 95.0 0.49 1.1E-05 44.6 12.1 24 56-79 191-214 (420)
367 PRK07133 DNA polymerase III su 94.9 0.49 1.1E-05 47.7 12.7 22 58-79 42-63 (725)
368 TIGR00643 recG ATP-dependent D 94.9 0.12 2.7E-06 52.0 8.7 97 299-411 266-364 (630)
369 PRK07471 DNA polymerase III su 94.9 0.59 1.3E-05 43.4 12.4 26 58-83 43-68 (365)
370 PF03237 Terminase_6: Terminas 94.8 0.53 1.1E-05 44.1 12.6 106 60-184 1-112 (384)
371 COG0552 FtsY Signal recognitio 94.8 2.1 4.4E-05 38.6 14.9 137 59-236 142-280 (340)
372 PF06733 DEAD_2: DEAD_2; Inte 94.8 0.016 3.5E-07 47.7 1.9 45 139-183 114-159 (174)
373 PRK14963 DNA polymerase III su 94.8 0.25 5.4E-06 48.0 10.1 21 59-79 39-59 (504)
374 TIGR01242 26Sp45 26S proteasom 94.8 0.42 9.2E-06 44.6 11.4 20 56-75 156-175 (364)
375 PRK14965 DNA polymerase III su 94.7 1.2 2.7E-05 44.2 14.9 22 58-79 40-61 (576)
376 PRK05986 cob(I)alamin adenolsy 94.7 0.21 4.5E-06 41.2 7.9 39 55-102 21-59 (191)
377 cd00984 DnaB_C DnaB helicase C 94.7 0.27 5.8E-06 43.0 9.4 40 54-101 11-50 (242)
378 PRK14950 DNA polymerase III su 94.7 0.38 8.2E-06 48.0 11.3 22 58-79 40-61 (585)
379 cd00561 CobA_CobO_BtuR ATP:cor 94.7 0.39 8.5E-06 38.5 9.2 33 59-100 5-37 (159)
380 PRK13851 type IV secretion sys 94.6 0.06 1.3E-06 49.3 5.2 42 54-105 160-201 (344)
381 TIGR01241 FtsH_fam ATP-depende 94.6 0.32 6.8E-06 47.6 10.5 58 15-75 49-107 (495)
382 PRK07940 DNA polymerase III su 94.6 0.52 1.1E-05 44.2 11.4 25 57-81 37-61 (394)
383 PRK14970 DNA polymerase III su 94.6 0.9 2E-05 42.5 13.1 20 57-76 40-59 (367)
384 KOG1807 Helicases [Replication 94.6 0.084 1.8E-06 51.9 6.1 72 41-115 378-449 (1025)
385 COG3972 Superfamily I DNA and 94.5 0.31 6.7E-06 45.7 9.4 143 28-182 151-308 (660)
386 PRK14953 DNA polymerase III su 94.5 0.8 1.7E-05 44.4 12.7 21 59-79 41-61 (486)
387 PRK06995 flhF flagellar biosyn 94.4 0.46 9.9E-06 45.6 10.8 89 57-155 257-346 (484)
388 PRK14955 DNA polymerase III su 94.4 0.71 1.5E-05 43.6 12.1 24 58-81 40-63 (397)
389 TIGR00708 cobA cob(I)alamin ad 94.4 0.41 8.9E-06 38.9 9.0 32 59-99 8-39 (173)
390 TIGR02782 TrbB_P P-type conjug 94.4 0.15 3.2E-06 45.9 7.2 57 42-105 117-174 (299)
391 PRK09376 rho transcription ter 94.4 0.15 3.2E-06 47.0 7.1 62 15-82 128-194 (416)
392 COG1485 Predicted ATPase [Gene 94.4 0.41 8.8E-06 43.2 9.6 46 169-229 130-175 (367)
393 cd01129 PulE-GspE PulE/GspE Th 94.4 0.12 2.6E-06 45.6 6.4 39 42-81 64-104 (264)
394 TIGR03015 pepcterm_ATPase puta 94.4 0.44 9.6E-06 42.3 10.2 34 42-75 24-62 (269)
395 KOG0701 dsRNA-specific nucleas 94.4 0.018 3.8E-07 61.9 1.3 96 320-431 293-399 (1606)
396 TIGR03877 thermo_KaiC_1 KaiC d 94.3 0.095 2.1E-06 45.6 5.7 53 55-117 20-72 (237)
397 TIGR02397 dnaX_nterm DNA polym 94.2 1.2 2.5E-05 41.6 13.1 20 58-77 38-57 (355)
398 PRK06904 replicative DNA helic 94.2 0.56 1.2E-05 45.3 11.0 117 53-182 218-347 (472)
399 PRK11034 clpA ATP-dependent Cl 94.2 1 2.2E-05 46.2 13.3 22 56-77 207-228 (758)
400 PRK00440 rfc replication facto 94.2 0.91 2E-05 41.5 12.2 18 58-75 40-57 (319)
401 PRK06305 DNA polymerase III su 94.2 1 2.2E-05 43.3 12.6 54 14-80 10-63 (451)
402 cd01394 radB RadB. The archaea 94.2 0.29 6.3E-06 42.0 8.3 43 49-100 7-54 (218)
403 KOG0741 AAA+-type ATPase [Post 94.2 0.54 1.2E-05 44.7 10.2 18 168-185 597-614 (744)
404 CHL00176 ftsH cell division pr 94.1 0.7 1.5E-05 46.3 11.7 58 16-76 178-236 (638)
405 PRK13900 type IV secretion sys 94.1 0.087 1.9E-06 48.1 5.1 26 55-81 159-184 (332)
406 COG3598 RepA RecA-family ATPas 94.1 0.5 1.1E-05 42.0 9.2 76 45-121 77-154 (402)
407 TIGR00767 rho transcription te 94.0 0.24 5.1E-06 46.0 7.7 19 55-73 167-185 (415)
408 PRK10867 signal recognition pa 94.0 1.2 2.5E-05 42.4 12.5 23 59-81 103-125 (433)
409 COG2804 PulE Type II secretory 94.0 0.1 2.2E-06 49.4 5.3 40 42-82 242-283 (500)
410 COG1200 RecG RecG-like helicas 93.9 0.25 5.4E-06 48.4 8.0 83 317-412 309-392 (677)
411 PHA03372 DNA packaging termina 93.9 1.4 2.9E-05 43.1 12.6 153 27-225 177-337 (668)
412 TIGR00580 mfd transcription-re 93.9 0.28 6.1E-06 51.3 8.9 97 300-411 483-580 (926)
413 COG0464 SpoVK ATPases of the A 93.9 0.88 1.9E-05 44.6 12.0 61 15-78 236-298 (494)
414 PF05729 NACHT: NACHT domain 93.7 0.74 1.6E-05 37.2 9.6 18 58-75 2-19 (166)
415 KOG0298 DEAD box-containing he 93.7 0.084 1.8E-06 54.9 4.5 113 299-433 1201-1314(1394)
416 PRK14954 DNA polymerase III su 93.7 1.1 2.4E-05 44.7 12.1 24 58-81 40-63 (620)
417 TIGR00678 holB DNA polymerase 93.7 0.63 1.4E-05 38.8 9.2 22 58-79 16-37 (188)
418 KOG0744 AAA+-type ATPase [Post 93.6 0.33 7.1E-06 43.1 7.3 47 57-107 178-224 (423)
419 cd01393 recA_like RecA is a b 93.6 0.37 8E-06 41.5 7.9 45 56-103 19-63 (226)
420 cd01128 rho_factor Transcripti 93.6 0.22 4.8E-06 43.4 6.4 19 54-72 14-32 (249)
421 COG1223 Predicted ATPase (AAA+ 93.5 1.8 3.8E-05 37.4 11.3 19 56-74 151-169 (368)
422 COG1110 Reverse gyrase [DNA re 93.5 0.18 3.9E-06 51.5 6.3 84 316-410 122-209 (1187)
423 TIGR01243 CDC48 AAA family ATP 93.5 0.6 1.3E-05 48.1 10.4 57 15-74 172-230 (733)
424 PF03796 DnaB_C: DnaB-like hel 93.5 1.2 2.6E-05 39.4 11.1 115 55-183 18-144 (259)
425 PF01443 Viral_helicase1: Vira 93.3 0.043 9.3E-07 47.7 1.7 16 59-74 1-16 (234)
426 KOG0730 AAA+-type ATPase [Post 93.3 0.97 2.1E-05 44.2 10.6 58 15-75 428-487 (693)
427 PRK08840 replicative DNA helic 93.3 0.88 1.9E-05 43.8 10.5 121 49-182 210-342 (464)
428 PHA00012 I assembly protein 93.3 0.97 2.1E-05 40.5 9.8 25 59-83 4-28 (361)
429 COG1219 ClpX ATP-dependent pro 93.3 0.07 1.5E-06 47.0 2.8 65 16-83 42-122 (408)
430 cd00544 CobU Adenosylcobinamid 93.2 1.4 3.1E-05 35.9 10.2 46 59-116 2-47 (169)
431 PRK13764 ATPase; Provisional 93.2 0.22 4.7E-06 49.1 6.3 26 55-81 256-281 (602)
432 TIGR02639 ClpA ATP-dependent C 93.1 2.2 4.8E-05 44.0 13.8 22 57-78 204-225 (731)
433 cd01131 PilT Pilus retraction 93.1 0.15 3.4E-06 42.8 4.7 22 59-81 4-25 (198)
434 KOG0729 26S proteasome regulat 93.1 4.6 0.0001 35.0 13.1 57 17-75 173-230 (435)
435 TIGR00416 sms DNA repair prote 93.1 0.91 2E-05 43.6 10.3 59 48-116 81-144 (454)
436 PRK05800 cobU adenosylcobinami 93.1 1.5 3.3E-05 35.8 10.2 48 58-117 3-50 (170)
437 PRK10416 signal recognition pa 93.1 4.9 0.00011 36.6 14.4 22 58-79 116-137 (318)
438 PF12846 AAA_10: AAA-like doma 93.0 0.14 3.1E-06 46.3 4.8 38 56-102 1-38 (304)
439 PF06309 Torsin: Torsin; Inte 92.9 0.65 1.4E-05 35.3 7.2 61 57-118 52-114 (127)
440 COG2909 MalT ATP-dependent tra 92.9 0.39 8.4E-06 48.3 7.5 41 171-226 131-171 (894)
441 TIGR00665 DnaB replicative DNA 92.9 0.96 2.1E-05 43.4 10.3 53 55-116 194-246 (434)
442 TIGR03600 phage_DnaB phage rep 92.9 0.67 1.5E-05 44.3 9.2 55 52-115 190-244 (421)
443 PRK08760 replicative DNA helic 92.9 1.2 2.5E-05 43.2 10.7 114 55-182 228-352 (476)
444 PF01637 Arch_ATPase: Archaeal 92.8 0.48 1E-05 40.9 7.6 17 56-72 20-36 (234)
445 TIGR02640 gas_vesic_GvpN gas v 92.8 0.14 3.1E-06 45.2 4.2 30 48-77 13-42 (262)
446 PRK07399 DNA polymerase III su 92.8 1.8 4E-05 39.3 11.3 47 147-199 104-150 (314)
447 PRK08451 DNA polymerase III su 92.7 1.8 4E-05 42.2 11.8 21 59-79 39-59 (535)
448 TIGR00959 ffh signal recogniti 92.7 4.1 8.8E-05 38.8 13.8 23 58-80 101-123 (428)
449 cd01130 VirB11-like_ATPase Typ 92.7 0.21 4.5E-06 41.6 4.8 31 42-72 10-41 (186)
450 TIGR02525 plasmid_TraJ plasmid 92.7 0.27 5.9E-06 45.6 5.9 27 55-82 148-174 (372)
451 KOG1806 DEAD box containing he 92.5 0.26 5.7E-06 50.2 5.9 68 42-116 739-806 (1320)
452 COG0542 clpA ATP-binding subun 92.5 1.3 2.9E-05 44.8 10.7 35 45-79 495-544 (786)
453 COG0467 RAD55 RecA-superfamily 92.5 0.32 6.8E-06 43.0 6.0 53 55-117 22-74 (260)
454 TIGR02655 circ_KaiC circadian 92.4 1.4 3.1E-05 42.9 10.8 61 47-117 249-314 (484)
455 TIGR02533 type_II_gspE general 92.4 0.26 5.7E-06 47.7 5.7 39 42-81 226-266 (486)
456 PRK04328 hypothetical protein; 92.4 0.32 6.9E-06 42.6 5.8 59 49-117 11-74 (249)
457 PF08423 Rad51: Rad51; InterP 92.4 0.48 1E-05 41.7 6.8 53 48-103 25-82 (256)
458 PRK06647 DNA polymerase III su 92.3 2.5 5.3E-05 41.9 12.2 23 58-80 40-62 (563)
459 KOG0732 AAA+-type ATPase conta 92.2 0.46 1E-05 49.3 7.3 60 15-76 259-319 (1080)
460 PRK05595 replicative DNA helic 92.2 0.89 1.9E-05 43.7 9.0 114 55-182 200-324 (444)
461 PRK08506 replicative DNA helic 92.2 1.5 3.2E-05 42.5 10.4 113 55-182 191-315 (472)
462 PF02572 CobA_CobO_BtuR: ATP:c 92.2 2.7 5.8E-05 34.2 10.3 140 59-234 6-148 (172)
463 TIGR03346 chaperone_ClpB ATP-d 92.2 2.3 4.9E-05 44.7 12.5 19 57-75 195-213 (852)
464 KOG0733 Nuclear AAA ATPase (VC 92.1 0.57 1.2E-05 45.4 7.3 55 17-74 186-241 (802)
465 COG0210 UvrD Superfamily I DNA 92.1 0.49 1.1E-05 48.2 7.6 71 41-118 2-72 (655)
466 CHL00095 clpC Clp protease ATP 92.1 1.8 4E-05 45.2 11.7 23 57-79 201-223 (821)
467 PRK05564 DNA polymerase III su 92.0 4.1 8.9E-05 37.2 12.8 28 168-199 92-119 (313)
468 PF00154 RecA: recA bacterial 92.0 0.55 1.2E-05 42.4 6.8 56 49-113 40-101 (322)
469 TIGR01420 pilT_fam pilus retra 92.0 0.28 6.1E-06 45.3 5.2 43 55-105 121-163 (343)
470 PRK08058 DNA polymerase III su 91.9 4.8 0.0001 37.0 13.1 28 168-199 109-136 (329)
471 PHA02542 41 41 helicase; Provi 91.9 0.9 2E-05 43.8 8.6 49 57-115 191-239 (473)
472 PRK10865 protein disaggregatio 91.9 1.9 4.2E-05 45.1 11.6 22 57-78 200-221 (857)
473 KOG0737 AAA+-type ATPase [Post 91.9 1.6 3.4E-05 39.7 9.4 60 18-77 89-148 (386)
474 PHA00350 putative assembly pro 91.9 1.1 2.5E-05 41.7 8.9 23 59-81 4-27 (399)
475 PRK08006 replicative DNA helic 91.8 2.1 4.6E-05 41.3 11.0 115 55-182 223-349 (471)
476 PRK07414 cob(I)yrinic acid a,c 91.8 4.6 9.9E-05 33.0 11.2 37 59-104 24-60 (178)
477 KOG1133 Helicase of the DEAD s 91.8 1.3 2.9E-05 43.5 9.3 41 37-78 12-56 (821)
478 PRK04841 transcriptional regul 91.8 1.6 3.5E-05 46.5 11.3 40 171-225 123-162 (903)
479 PRK10689 transcription-repair 91.8 0.6 1.3E-05 50.2 7.9 80 318-410 648-728 (1147)
480 TIGR03880 KaiC_arch_3 KaiC dom 91.7 0.47 1E-05 40.8 6.0 52 55-116 15-66 (224)
481 TIGR02524 dot_icm_DotB Dot/Icm 91.7 0.35 7.6E-06 44.7 5.4 26 55-81 133-158 (358)
482 PF00437 T2SE: Type II/IV secr 91.6 0.31 6.7E-06 43.4 5.0 42 55-105 126-167 (270)
483 COG0630 VirB11 Type IV secreto 91.6 0.33 7.1E-06 44.0 5.1 54 42-105 128-182 (312)
484 PRK09165 replicative DNA helic 91.6 1.5 3.2E-05 42.8 9.9 121 56-182 217-354 (497)
485 COG0466 Lon ATP-dependent Lon 91.6 0.88 1.9E-05 45.0 8.1 48 148-199 400-447 (782)
486 PF01078 Mg_chelatase: Magnesi 91.5 0.19 4.2E-06 41.9 3.2 19 55-73 21-39 (206)
487 PF14516 AAA_35: AAA-like doma 91.5 0.39 8.4E-06 44.1 5.5 41 42-83 15-57 (331)
488 COG2401 ABC-type ATPase fused 91.5 0.23 5.1E-06 45.6 3.9 58 20-79 371-432 (593)
489 PRK10436 hypothetical protein; 91.4 0.32 7E-06 46.5 5.0 39 42-81 202-242 (462)
490 PRK04301 radA DNA repair and r 91.4 0.76 1.6E-05 42.0 7.3 44 56-102 102-145 (317)
491 PRK14971 DNA polymerase III su 91.4 3.2 7E-05 41.6 12.1 22 58-79 41-62 (614)
492 COG0513 SrmB Superfamily II DN 91.3 1.1 2.3E-05 44.1 8.6 92 303-410 81-180 (513)
493 TIGR03819 heli_sec_ATPase heli 91.3 0.42 9.1E-06 43.9 5.5 54 42-105 163-217 (340)
494 COG5008 PilU Tfp pilus assembl 91.2 0.28 6.2E-06 42.1 3.9 18 57-74 128-145 (375)
495 PRK07004 replicative DNA helic 91.2 2.2 4.7E-05 41.2 10.4 115 55-182 212-337 (460)
496 KOG2170 ATPase of the AAA+ sup 91.2 1.4 3.1E-05 38.9 8.1 57 171-236 180-236 (344)
497 cd01123 Rad51_DMC1_radA Rad51_ 91.0 0.72 1.6E-05 40.0 6.6 45 55-102 18-62 (235)
498 COG2109 BtuR ATP:corrinoid ade 91.0 3.3 7.1E-05 33.9 9.4 33 59-100 31-63 (198)
499 COG1197 Mfd Transcription-repa 91.0 0.87 1.9E-05 47.8 7.8 81 317-410 641-722 (1139)
500 TIGR02237 recomb_radB DNA repa 90.8 0.41 8.9E-06 40.7 4.8 39 55-102 11-49 (209)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-62 Score=418.19 Aligned_cols=350 Identities=37% Similarity=0.589 Sum_probs=326.0
Q ss_pred ccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCC
Q 013392 14 IFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 93 (444)
Q Consensus 14 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~ 93 (444)
..+..+|.++++++.+++++ +..|+..|+++|.+++|..+.|+|+|..+.||||||.+|++|+++.++.. ...
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac-~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~------p~~ 129 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEAC-QELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE------PKL 129 (476)
T ss_pred hhhhcchhhcCcCHHHHHHH-HHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC------CCC
Confidence 45678999999999999999 56699999999999999999999999999999999999999999999883 335
Q ss_pred ceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEE
Q 013392 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (444)
Q Consensus 94 ~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lv 173 (444)
++++|++|+++|+.|..+.+..++...+ ....++.+|.....+...+..+++|+|+||..|++.+...+.|.++.++++
T Consensus 130 ~~~lVLtPtRELA~QI~e~fe~Lg~~ig-lr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 130 FFALVLTPTRELAQQIAEQFEALGSGIG-LRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred ceEEEecCcHHHHHHHHHHHHHhccccC-eEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 7899999999999999999999987766 667888888888888999999999999999999999998899999999999
Q ss_pred EEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCC
Q 013392 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (444)
Q Consensus 174 V~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (444)
|+||+|+++++.|...++.|++.++. .+|.++||||++.....+....+.+|..+......
T Consensus 209 VlDEADrlLd~dF~~~ld~ILk~ip~---------------erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky---- 269 (476)
T KOG0330|consen 209 VLDEADRLLDMDFEEELDYILKVIPR---------------ERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY---- 269 (476)
T ss_pred hhchHHhhhhhhhHHHHHHHHHhcCc---------------cceEEEEEeecchhhHHHHhhccCCCeEEeccchh----
Confidence 99999999999999999999999997 99999999999999999998888888888766653
Q ss_pred cccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhh
Q 013392 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (444)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~ 333 (444)
.....+.+.|..++...|..+|..++++. .+..+||||++...++
T Consensus 270 -------------------------------~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~----~g~s~iVF~~t~~tt~ 314 (476)
T KOG0330|consen 270 -------------------------------QTVDHLKQTYLFVPGKDKDTYLVYLLNEL----AGNSVIVFCNTCNTTR 314 (476)
T ss_pred -------------------------------cchHHhhhheEeccccccchhHHHHHHhh----cCCcEEEEEeccchHH
Confidence 55678899999999999999999999985 3589999999999999
Q ss_pred hhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC
Q 013392 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (444)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~ 413 (444)
.++-+|+.+ |+.+..+||.|+++.|.-.++.|++|..+||+|||+.++|+|+|.+++||+||.
T Consensus 315 ~la~~L~~l-----------------g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDi 377 (476)
T KOG0330|consen 315 FLALLLRNL-----------------GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDI 377 (476)
T ss_pred HHHHHHHhc-----------------CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCC
Confidence 999999988 899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhcccccccCCCcccccceEEe
Q 013392 414 AGEATEYVHRYLKHLPVGNFYFNIPLIVC 442 (444)
Q Consensus 414 ~~s~~~~~Q~~GR~~R~g~~g~~~~~i~~ 442 (444)
|.+..+|+||+||++|.|+.|.+|+++.-
T Consensus 378 P~~skDYIHRvGRtaRaGrsG~~ItlVtq 406 (476)
T KOG0330|consen 378 PTHSKDYIHRVGRTARAGRSGKAITLVTQ 406 (476)
T ss_pred CCcHHHHHHHcccccccCCCcceEEEEeh
Confidence 99999999999999999999999999864
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-61 Score=435.56 Aligned_cols=355 Identities=34% Similarity=0.546 Sum_probs=324.6
Q ss_pred CccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEE
Q 013392 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 98 (444)
Q Consensus 19 ~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vli 98 (444)
.|.+++|++.+.+.++.. ||..|+|+|.+.|+.++.|+|++..+.||||||++|++|++.++........+.+++.+|+
T Consensus 92 ~f~~~~ls~~~~~~lk~~-g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQ-GFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHhc-CCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 799999999999999555 9999999999999999999999999999999999999999999987445555577899999
Q ss_pred EeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEech
Q 013392 99 LVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEA 178 (444)
Q Consensus 99 l~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~ 178 (444)
++||++|+.|+.+.+.++..... ....++++|.....+...+..+.+|+|+||.++.++++. ....++++.++|+||+
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~-~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDEA 248 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLR-LRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDEA 248 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCC-ccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEeccH
Confidence 99999999999999999988766 667889999999999999999999999999999999998 7788899999999999
Q ss_pred hHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCccccc
Q 013392 179 DRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVR 258 (444)
Q Consensus 179 h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (444)
|+|++.+|...+..++..++.. ..|.+++|||++.....+...++.+|..+.+....
T Consensus 249 DrMldmGFe~qI~~Il~~i~~~--------------~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~--------- 305 (519)
T KOG0331|consen 249 DRMLDMGFEPQIRKILSQIPRP--------------DRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKK--------- 305 (519)
T ss_pred HhhhccccHHHHHHHHHhcCCC--------------cccEEEEeeeccHHHHHHHHHHhcCceEEEecchh---------
Confidence 9999999999999999999553 55999999999999999999999988887665441
Q ss_pred ccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhh
Q 013392 259 FGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSL 338 (444)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~ 338 (444)
......++.+....++...|...+..+|..+. ...+.|+||||+++..|+.+...
T Consensus 306 ------------------------~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~ 360 (519)
T KOG0331|consen 306 ------------------------ELKANHNIRQIVEVCDETAKLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDELARN 360 (519)
T ss_pred ------------------------hhhhhcchhhhhhhcCHHHHHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHHH
Confidence 01334667888888898899999999999886 56778999999999999999999
Q ss_pred hhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcc
Q 013392 339 LSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEAT 418 (444)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~ 418 (444)
+... ++++..+||+.++.+|..+++.|++|+..|||||+++++|+|+|++++||+|++|.+.+
T Consensus 361 l~~~-----------------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vE 423 (519)
T KOG0331|consen 361 LRRK-----------------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVE 423 (519)
T ss_pred HHhc-----------------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHH
Confidence 9986 78999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccCCCcccccceEE
Q 013392 419 EYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 419 ~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+|+||+||+||.|++|.++.|..
T Consensus 424 dYVHRiGRTGRa~~~G~A~tfft 446 (519)
T KOG0331|consen 424 DYVHRIGRTGRAGKKGTAITFFT 446 (519)
T ss_pred HHHhhcCccccCCCCceEEEEEe
Confidence 99999999999999999998864
No 3
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-60 Score=422.39 Aligned_cols=417 Identities=47% Similarity=0.767 Sum_probs=356.9
Q ss_pred hccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCC
Q 013392 13 EIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 92 (444)
Q Consensus 13 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~ 92 (444)
-.+.+..|.++||++.+...|..+|++..|+.+|.++|+.+++|+|+++.++||+|||++|++|+.+.+...+++..+..
T Consensus 131 ~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~ 210 (708)
T KOG0348|consen 131 APFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSD 210 (708)
T ss_pred cccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccE
Q 013392 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRW 172 (444)
Q Consensus 93 ~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~l 172 (444)
|..+|||+||++||.|.++.++++.+.+.+++.+.+.||.....+...++.+++|+|+||.+|.+.+.+...+.++.+++
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred EEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCC
Q 013392 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPE 252 (444)
Q Consensus 173 vV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (444)
||+||++++++.+|.+.+..|++.+.......+. ...-....|.+++|||+...+..+....+.+|.++..+......
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~--~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~ 368 (708)
T KOG0348|consen 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAECK--DPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQL 368 (708)
T ss_pred EEecchhHHHhccchhhHHHHHHHHhhccchhcc--cccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhc
Confidence 9999999999999999999999988652211111 11112257889999999999999999999999999844332111
Q ss_pred CcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchh
Q 013392 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (444)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~ 332 (444)
. . .....+....+ .. ....+.+.+|.++.+.+..++..-++-.|..+|..........++|||.++.+.+
T Consensus 369 ~-------p-~~~a~~ev~~~-~~-~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~V 438 (708)
T KOG0348|consen 369 N-------P-KDKAVQEVDDG-PA-GDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSV 438 (708)
T ss_pred C-------c-chhhhhhcCCc-cc-ccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHH
Confidence 1 0 00001111111 11 1112446789999999999999999999999998877667777999999999999
Q ss_pred hhhhhhhhhcccC----CCC-CchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcE
Q 013392 333 DFHYSLLSEFQWS----PHS-QPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407 (444)
Q Consensus 333 ~~l~~~l~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~ 407 (444)
+..+++|.+.... ..+ ...+.....+.+.+++.+||+|++++|..+++.|...+-.||+|||++.+|+|+|+++.
T Consensus 439 eFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~ 518 (708)
T KOG0348|consen 439 EFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGL 518 (708)
T ss_pred HHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCe
Confidence 9999998775443 111 11233445677888999999999999999999999999889999999999999999999
Q ss_pred EEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 408 IIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 408 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
||.|++|.+..+|+||+||+.|.|.+|-++.|+.
T Consensus 519 vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~ 552 (708)
T KOG0348|consen 519 VVQYDPPFSTADYLHRVGRTARAGEKGEALLFLL 552 (708)
T ss_pred EEEeCCCCCHHHHHHHhhhhhhccCCCceEEEec
Confidence 9999999999999999999999999999999874
No 4
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.5e-58 Score=434.15 Aligned_cols=355 Identities=29% Similarity=0.452 Sum_probs=300.3
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCC-CCCCC
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRI-DRSSG 93 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~-~~~~~ 93 (444)
++..+|++++|++++.+.| ..+||..|+++|.++++.+++|+|+++++|||+|||++|++++++.+....... ....+
T Consensus 5 ~~~~~f~~~~l~~~l~~~l-~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~ 83 (423)
T PRK04837 5 LTEQKFSDFALHPQVVEAL-EKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQ 83 (423)
T ss_pred CCCCCHhhCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCC
Confidence 4568999999999999999 667999999999999999999999999999999999999999999886543211 12346
Q ss_pred ceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEE
Q 013392 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (444)
Q Consensus 94 ~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lv 173 (444)
+++|||+|+++|+.|+.+.+..+....+ .....+.+|.........+..+++|+|+||+++.+++.+ ..+.++.++++
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~l 161 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATG-LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQVV 161 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccccEE
Confidence 7899999999999999999999887665 455666777777777777778899999999999998876 56677899999
Q ss_pred EEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCC
Q 013392 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (444)
Q Consensus 174 V~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (444)
|+||||++++.++...+..++..++... ..+.+++|||++.....+....+.+|..+.+.....
T Consensus 162 ViDEad~l~~~~f~~~i~~i~~~~~~~~-------------~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~--- 225 (423)
T PRK04837 162 VLDEADRMFDLGFIKDIRWLFRRMPPAN-------------QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK--- 225 (423)
T ss_pred EEecHHHHhhcccHHHHHHHHHhCCCcc-------------ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc---
Confidence 9999999999999999999988886432 567899999999988888887777777765443220
Q ss_pred cccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhh
Q 013392 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (444)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~ 333 (444)
....+.+.+.......|...+..++.. ....++||||+++..++
T Consensus 226 --------------------------------~~~~i~~~~~~~~~~~k~~~l~~ll~~----~~~~~~lVF~~t~~~~~ 269 (423)
T PRK04837 226 --------------------------------TGHRIKEELFYPSNEEKMRLLQTLIEE----EWPDRAIIFANTKHRCE 269 (423)
T ss_pred --------------------------------CCCceeEEEEeCCHHHHHHHHHHHHHh----cCCCeEEEEECCHHHHH
Confidence 012233344444455666666666654 34579999999999999
Q ss_pred hhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC
Q 013392 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (444)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~ 413 (444)
.+.+.|... ++.+..+||++++.+|..++++|++|+.+|||||+++++|+|+|++++||+|++
T Consensus 270 ~l~~~L~~~-----------------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~ 332 (423)
T PRK04837 270 EIWGHLAAD-----------------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDL 332 (423)
T ss_pred HHHHHHHhC-----------------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCC
Confidence 999999876 889999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhcccccccCCCcccccceEE
Q 013392 414 AGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 414 ~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
|.+...|+||+||+||.|+.|.+++|+.
T Consensus 333 P~s~~~yiqR~GR~gR~G~~G~ai~~~~ 360 (423)
T PRK04837 333 PDDCEDYVHRIGRTGRAGASGHSISLAC 360 (423)
T ss_pred CCchhheEeccccccCCCCCeeEEEEeC
Confidence 9999999999999999999999998863
No 5
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.6e-57 Score=432.01 Aligned_cols=351 Identities=32% Similarity=0.497 Sum_probs=296.6
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEE
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vl 97 (444)
|+|++++|++++.+.| ..+||..|+++|.++++.++.++|+++++|||+|||++|++++++.+.............++|
T Consensus 1 ~~f~~l~l~~~l~~~l-~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aL 79 (456)
T PRK10590 1 MSFDSLGLSPDILRAV-AEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79 (456)
T ss_pred CCHHHcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEE
Confidence 5799999999999999 667999999999999999999999999999999999999999999886533221222345799
Q ss_pred EEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEec
Q 013392 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (444)
Q Consensus 98 il~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE 177 (444)
||+|+++|+.|+.+.+..+....+ .....+.++.........+..+++|+|+||++|++++.. ..+.++++++||+||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDE 157 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDE 157 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCC-CEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeec
Confidence 999999999999999999877655 455666777777777777888899999999999998876 556678999999999
Q ss_pred hhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccc
Q 013392 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (444)
Q Consensus 178 ~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (444)
+|++++.++...+..++..++. ..|.+++|||++.....+....+.++..+.+....
T Consensus 158 ah~ll~~~~~~~i~~il~~l~~---------------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-------- 214 (456)
T PRK10590 158 ADRMLDMGFIHDIRRVLAKLPA---------------KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-------- 214 (456)
T ss_pred HHHHhccccHHHHHHHHHhCCc---------------cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc--------
Confidence 9999999998888888888765 78999999999998888888887777665443221
Q ss_pred cccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhh
Q 013392 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (444)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~ 337 (444)
.....+.+.+..++...+...+..++.. ....++||||+++..++.+++
T Consensus 215 ---------------------------~~~~~i~~~~~~~~~~~k~~~l~~l~~~----~~~~~~lVF~~t~~~~~~l~~ 263 (456)
T PRK10590 215 ---------------------------TASEQVTQHVHFVDKKRKRELLSQMIGK----GNWQQVLVFTRTKHGANHLAE 263 (456)
T ss_pred ---------------------------ccccceeEEEEEcCHHHHHHHHHHHHHc----CCCCcEEEEcCcHHHHHHHHH
Confidence 1112344455555555555555555543 445799999999999999999
Q ss_pred hhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCc
Q 013392 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417 (444)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~ 417 (444)
.|... ++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+|+.|.+.
T Consensus 264 ~L~~~-----------------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~ 326 (456)
T PRK10590 264 QLNKD-----------------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVP 326 (456)
T ss_pred HHHHC-----------------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCH
Confidence 99876 8889999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccccccCCCcccccceEEe
Q 013392 418 TEYVHRYLKHLPVGNFYFNIPLIVC 442 (444)
Q Consensus 418 ~~~~Q~~GR~~R~g~~g~~~~~i~~ 442 (444)
.+|+||+||+||.|..|.+++|+..
T Consensus 327 ~~yvqR~GRaGR~g~~G~ai~l~~~ 351 (456)
T PRK10590 327 EDYVHRIGRTGRAAATGEALSLVCV 351 (456)
T ss_pred HHhhhhccccccCCCCeeEEEEecH
Confidence 9999999999999999999998753
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-57 Score=431.04 Aligned_cols=349 Identities=38% Similarity=0.576 Sum_probs=313.1
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEE
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vl 97 (444)
.+|.++++++++.+.+.+ .||..|+|+|..+++.++.|+|++..++||+|||.+|++|+++.+..... .....+|
T Consensus 29 ~~F~~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~----~~~~~aL 103 (513)
T COG0513 29 PEFASLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE----RKYVSAL 103 (513)
T ss_pred CCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc----cCCCceE
Confidence 679999999999999955 79999999999999999999999999999999999999999999764211 1111199
Q ss_pred EEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEec
Q 013392 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (444)
Q Consensus 98 il~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE 177 (444)
|++||++|+.|..+.+.++...........+++|.....+...+..+++|+|+||.++++++.. +.+.++.+.++|+||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~-~~l~l~~v~~lVlDE 182 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR-GKLDLSGVETLVLDE 182 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc-CCcchhhcCEEEecc
Confidence 9999999999999999999887644667888899988888888888899999999999999998 578889999999999
Q ss_pred hhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccc
Q 013392 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (444)
Q Consensus 178 ~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (444)
+++|++.+|.+.+..++..++. .+|.++||||++.....+.+.++.+|..+.+.....
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~---------------~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~------- 240 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPP---------------DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKL------- 240 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCc---------------ccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccc-------
Confidence 9999999999999999999987 899999999999999999999999998776663321
Q ss_pred cccCccccccccccCCCccccccCccccccccceeeEEEcCCCC-cHHHHHHHHHhhcccccCceEEEEecccchhhhhh
Q 013392 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (444)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~ 336 (444)
......+.+.++.+.... |...|..++... ...++||||+++..++.+.
T Consensus 241 --------------------------~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~----~~~~~IVF~~tk~~~~~l~ 290 (513)
T COG0513 241 --------------------------ERTLKKIKQFYLEVESEEEKLELLLKLLKDE----DEGRVIVFVRTKRLVEELA 290 (513)
T ss_pred --------------------------cccccCceEEEEEeCCHHHHHHHHHHHHhcC----CCCeEEEEeCcHHHHHHHH
Confidence 123467888999988766 999999888763 3447999999999999999
Q ss_pred hhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCC
Q 013392 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (444)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s 416 (444)
..|... |+++..+||++++++|.+.++.|++|+.+||||||++++|+|+|++++||+|+.|.+
T Consensus 291 ~~l~~~-----------------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~ 353 (513)
T COG0513 291 ESLRKR-----------------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLD 353 (513)
T ss_pred HHHHHC-----------------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCC
Confidence 999987 899999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccccccCCCcccccceEE
Q 013392 417 ATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 417 ~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
.+.|+||+||+||+|..|.+++|+.
T Consensus 354 ~e~yvHRiGRTgRaG~~G~ai~fv~ 378 (513)
T COG0513 354 PEDYVHRIGRTGRAGRKGVAISFVT 378 (513)
T ss_pred HHHheeccCccccCCCCCeEEEEeC
Confidence 9999999999999999999999974
No 7
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.6e-57 Score=433.97 Aligned_cols=353 Identities=31% Similarity=0.476 Sum_probs=300.5
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
-.+|+++++++++.+.| .++||..|+++|.++++.+++|+|+++++|||+|||++|++|++.++...+.. ....++.+
T Consensus 129 ~~~f~~~~l~~~l~~~l-~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~-~~~~gp~~ 206 (545)
T PTZ00110 129 VVSFEYTSFPDYILKSL-KNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL-RYGDGPIV 206 (545)
T ss_pred cCCHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc-cCCCCcEE
Confidence 35799999999999999 67799999999999999999999999999999999999999998887653221 12346789
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
|||+||++|+.|+.+++.++..... ......+++.........+..+++|+|+||++|.+++.. ....+.++++||+|
T Consensus 207 LIL~PTreLa~Qi~~~~~~~~~~~~-i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViD 284 (545)
T PTZ00110 207 LVLAPTRELAEQIREQCNKFGASSK-IRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVLD 284 (545)
T ss_pred EEECChHHHHHHHHHHHHHHhcccC-ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEee
Confidence 9999999999999999999876544 455667778777777778888899999999999999886 55667899999999
Q ss_pred chhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcC-CCeEEcccCcCCCCCcc
Q 013392 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLE-TPVLIGLDEKKLPEDKS 255 (444)
Q Consensus 177 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 255 (444)
|||++++.++...+..++..++. .+|++++|||++.....+...++. .+..+.+....
T Consensus 285 EAd~mld~gf~~~i~~il~~~~~---------------~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~------ 343 (545)
T PTZ00110 285 EADRMLDMGFEPQIRKIVSQIRP---------------DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD------ 343 (545)
T ss_pred hHHhhhhcchHHHHHHHHHhCCC---------------CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc------
Confidence 99999999999999999988765 789999999999988887776654 34444332211
Q ss_pred cccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhh
Q 013392 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (444)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l 335 (444)
.....++.+.+..+....|...+..++..... .+.++||||++++.++.+
T Consensus 344 ----------------------------l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l 393 (545)
T PTZ00110 344 ----------------------------LTACHNIKQEVFVVEEHEKRGKLKMLLQRIMR--DGDKILIFVETKKGADFL 393 (545)
T ss_pred ----------------------------cccCCCeeEEEEEEechhHHHHHHHHHHHhcc--cCCeEEEEecChHHHHHH
Confidence 01123345556666677788888888877642 567999999999999999
Q ss_pred hhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCC
Q 013392 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (444)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~ 415 (444)
+..|... ++.+..+||++++++|..++++|++|+.+|||||+++++|+|+|++++||+|+.|.
T Consensus 394 ~~~L~~~-----------------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~ 456 (545)
T PTZ00110 394 TKELRLD-----------------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPN 456 (545)
T ss_pred HHHHHHc-----------------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCC
Confidence 9999876 78899999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhcccccccCCCcccccceEE
Q 013392 416 EATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 416 s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+..+|+||+||+||.|++|.+++|+.
T Consensus 457 s~~~yvqRiGRtGR~G~~G~ai~~~~ 482 (545)
T PTZ00110 457 QIEDYVHRIGRTGRAGAKGASYTFLT 482 (545)
T ss_pred CHHHHHHHhcccccCCCCceEEEEEC
Confidence 99999999999999999999998864
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.7e-57 Score=428.95 Aligned_cols=345 Identities=32% Similarity=0.475 Sum_probs=303.6
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
..+|+++++++.+.+.| ..+||..|+|+|.++++.+++++|+++++|||+|||++|++++++.+... ....++
T Consensus 3 ~~~f~~l~l~~~l~~~l-~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------~~~~~~ 75 (460)
T PRK11776 3 MTAFSTLPLPPALLANL-NELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------RFRVQA 75 (460)
T ss_pred CCChhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------cCCceE
Confidence 46899999999999999 67799999999999999999999999999999999999999999987542 224579
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
||++||++|+.|+.++++.+...........++++.........+..+++|+|+||+.+.+++.+ +.+.++++++||+|
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViD 154 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLD 154 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEE
Confidence 99999999999999999998765545667778888888888888888899999999999999886 55667899999999
Q ss_pred chhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCccc
Q 013392 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (444)
Q Consensus 177 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (444)
|+|++.+.++...+..++..++. ..|++++|||+++....+...++.+|..+.+....
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~~---------------~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~------- 212 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAPA---------------RRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH------- 212 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCCc---------------ccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-------
Confidence 99999999999999999998876 88999999999999999888888888776554321
Q ss_pred ccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhh
Q 013392 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (444)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~ 336 (444)
....+.+.+..++...|...+..++.. ..+.++||||++++.++.++
T Consensus 213 -----------------------------~~~~i~~~~~~~~~~~k~~~l~~ll~~----~~~~~~lVF~~t~~~~~~l~ 259 (460)
T PRK11776 213 -----------------------------DLPAIEQRFYEVSPDERLPALQRLLLH----HQPESCVVFCNTKKECQEVA 259 (460)
T ss_pred -----------------------------CCCCeeEEEEEeCcHHHHHHHHHHHHh----cCCCceEEEECCHHHHHHHH
Confidence 112355666677777788888887765 34568999999999999999
Q ss_pred hhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCC
Q 013392 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (444)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s 416 (444)
+.|... ++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+
T Consensus 260 ~~L~~~-----------------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~ 322 (460)
T PRK11776 260 DALNAQ-----------------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARD 322 (460)
T ss_pred HHHHhC-----------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCC
Confidence 999887 889999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccccccCCCcccccceEE
Q 013392 417 ATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 417 ~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
...|+||+||+||.|+.|.+++|+.
T Consensus 323 ~~~yiqR~GRtGR~g~~G~ai~l~~ 347 (460)
T PRK11776 323 PEVHVHRIGRTGRAGSKGLALSLVA 347 (460)
T ss_pred HhHhhhhcccccCCCCcceEEEEEc
Confidence 9999999999999999999998863
No 9
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-56 Score=431.40 Aligned_cols=353 Identities=32% Similarity=0.454 Sum_probs=298.6
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCC-CCCCCCceE
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPR-IDRSSGTFA 96 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~-~~~~~~~~v 96 (444)
++|++++|++++++.| ..+||..|+++|.++|+.++.++|+++++|||+|||++|++++++.+...... .......++
T Consensus 9 ~~f~~l~l~~~l~~~L-~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 9 LTFSSFDLHPALLAGL-ESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CChhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 5799999999999999 67799999999999999999999999999999999999999999988653221 111235689
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
|||+|+++|+.|+.+.+.+++...+ .....++++.........+..+++|+|+||++|++++.....+.+..+++||+|
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~-i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLG-LRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 9999999999999999999887655 556677788777777777777899999999999998877556677889999999
Q ss_pred chhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCccc
Q 013392 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (444)
Q Consensus 177 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (444)
|+|++++.++...+..++..++... ..|+++||||++.....+...++..+..+.+....
T Consensus 167 EAh~lld~gf~~~i~~il~~lp~~~-------------~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~------- 226 (572)
T PRK04537 167 EADRMFDLGFIKDIRFLLRRMPERG-------------TRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET------- 226 (572)
T ss_pred CHHHHhhcchHHHHHHHHHhccccc-------------CceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-------
Confidence 9999999999999999988887532 57999999999998888887777766554332221
Q ss_pred ccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhh
Q 013392 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (444)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~ 336 (444)
.....+.+.+.......+...+..++.. ..+.++||||+++..++.++
T Consensus 227 ----------------------------~~~~~i~q~~~~~~~~~k~~~L~~ll~~----~~~~k~LVF~nt~~~ae~l~ 274 (572)
T PRK04537 227 ----------------------------ITAARVRQRIYFPADEEKQTLLLGLLSR----SEGARTMVFVNTKAFVERVA 274 (572)
T ss_pred ----------------------------ccccceeEEEEecCHHHHHHHHHHHHhc----ccCCcEEEEeCCHHHHHHHH
Confidence 0112344555555556677776666654 45679999999999999999
Q ss_pred hhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCC
Q 013392 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (444)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s 416 (444)
+.|... ++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+|+.|.+
T Consensus 275 ~~L~~~-----------------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s 337 (572)
T PRK04537 275 RTLERH-----------------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFD 337 (572)
T ss_pred HHHHHc-----------------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCC
Confidence 999876 889999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccccccCCCcccccceEE
Q 013392 417 ATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 417 ~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
..+|+||+||+||.|+.|.+++|+.
T Consensus 338 ~~~yvqRiGRaGR~G~~G~ai~~~~ 362 (572)
T PRK04537 338 AEDYVHRIGRTARLGEEGDAISFAC 362 (572)
T ss_pred HHHHhhhhcccccCCCCceEEEEec
Confidence 9999999999999999999999874
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.5e-56 Score=427.61 Aligned_cols=354 Identities=31% Similarity=0.476 Sum_probs=297.0
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCC-CCCCCCc
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPR-IDRSSGT 94 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~-~~~~~~~ 94 (444)
.-.+|+++++++.+.+.| ..+||..|+++|.++++.+++|+|+++++|||+|||++|++|++.++...... .....++
T Consensus 119 pi~~f~~~~l~~~l~~~L-~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~ 197 (518)
T PLN00206 119 PILSFSSCGLPPKLLLNL-ETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNP 197 (518)
T ss_pred hhcCHHhCCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCc
Confidence 345789999999999999 56699999999999999999999999999999999999999999887643221 1123577
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEE
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV 174 (444)
++|||+|+++|+.|+.+.++.+....+ .....+.+|.........+..+++|+|+||++|.+++.. ....++++++||
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~~-~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~lV 275 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGLP-FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK-HDIELDNVSVLV 275 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCC-ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccchheeEEE
Confidence 899999999999999999998876554 444566677777777777788899999999999999887 466778999999
Q ss_pred EechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCc
Q 013392 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (444)
Q Consensus 175 ~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (444)
+||+|++.+.++...+..++..++ ..|++++|||+++....+...+..++..+......
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~----------------~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~----- 334 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALS----------------QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN----- 334 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCC----------------CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC-----
Confidence 999999999999888888887764 67999999999999988888887777766543321
Q ss_pred ccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhh
Q 013392 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (444)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~ 334 (444)
.....+.+....+....+...+..++.... ....++||||+++..++.
T Consensus 335 ------------------------------~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~--~~~~~~iVFv~s~~~a~~ 382 (518)
T PLN00206 335 ------------------------------RPNKAVKQLAIWVETKQKKQKLFDILKSKQ--HFKPPAVVFVSSRLGADL 382 (518)
T ss_pred ------------------------------CCCcceeEEEEeccchhHHHHHHHHHHhhc--ccCCCEEEEcCCchhHHH
Confidence 011234455556666667777777776542 224589999999999999
Q ss_pred hhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCC
Q 013392 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (444)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~ 414 (444)
+.+.|.... ++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|
T Consensus 383 l~~~L~~~~----------------g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P 446 (518)
T PLN00206 383 LANAITVVT----------------GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMP 446 (518)
T ss_pred HHHHHhhcc----------------CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCC
Confidence 999886532 7789999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcccccccCCCcccccceEE
Q 013392 415 GEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 415 ~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
.+..+|+||+||+||.|+.|.+++|+.
T Consensus 447 ~s~~~yihRiGRaGR~g~~G~ai~f~~ 473 (518)
T PLN00206 447 NTIKEYIHQIGRASRMGEKGTAIVFVN 473 (518)
T ss_pred CCHHHHHHhccccccCCCCeEEEEEEc
Confidence 999999999999999999999998864
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.4e-56 Score=431.80 Aligned_cols=345 Identities=31% Similarity=0.475 Sum_probs=302.5
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEE
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vl 97 (444)
++|.+++|++.+.+.| ..+||..|+++|.++++.++.++++++++|||+|||.++++++++.+... ...+++|
T Consensus 6 ~~f~~l~L~~~ll~al-~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~------~~~~~~L 78 (629)
T PRK11634 6 TTFADLGLKAPILEAL-NDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE------LKAPQIL 78 (629)
T ss_pred CCHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc------cCCCeEE
Confidence 4699999999999999 66799999999999999999999999999999999999999999887541 2356799
Q ss_pred EEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEec
Q 013392 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (444)
Q Consensus 98 il~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE 177 (444)
|++|+++|+.|+++.+.++...........++++.....+...+..+++|+|+||+++++++.+ ..+.++++++||+||
T Consensus 79 IL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDE 157 (629)
T PRK11634 79 VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDE 157 (629)
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEecc
Confidence 9999999999999999998876655667778888888777778888899999999999998876 566778999999999
Q ss_pred hhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccc
Q 013392 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (444)
Q Consensus 178 ~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (444)
+|+++..++...+..++..++. ..|.++||||++.....+...++.+|..+.+....
T Consensus 158 Ad~ml~~gf~~di~~Il~~lp~---------------~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-------- 214 (629)
T PRK11634 158 ADEMLRMGFIEDVETIMAQIPE---------------GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-------- 214 (629)
T ss_pred HHHHhhcccHHHHHHHHHhCCC---------------CCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc--------
Confidence 9999999999999999998876 78999999999999988888888887776543321
Q ss_pred cccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhh
Q 013392 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (444)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~ 337 (444)
.....+.+.+..+....|...+..++.. ....++||||+++..++.+++
T Consensus 215 ---------------------------~~~~~i~q~~~~v~~~~k~~~L~~~L~~----~~~~~~IVF~~tk~~a~~l~~ 263 (629)
T PRK11634 215 ---------------------------TTRPDISQSYWTVWGMRKNEALVRFLEA----EDFDAAIIFVRTKNATLEVAE 263 (629)
T ss_pred ---------------------------ccCCceEEEEEEechhhHHHHHHHHHHh----cCCCCEEEEeccHHHHHHHHH
Confidence 1112345566666667788888777764 345689999999999999999
Q ss_pred hhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCc
Q 013392 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417 (444)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~ 417 (444)
.|... ++.+..+||++++.+|.+++++|++|+.+|||||+++++|+|+|++++||+|+.|.+.
T Consensus 264 ~L~~~-----------------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~ 326 (629)
T PRK11634 264 ALERN-----------------GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDS 326 (629)
T ss_pred HHHhC-----------------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCH
Confidence 99887 8899999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccccccCCCcccccceEE
Q 013392 418 TEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 418 ~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
..|+||+||+||.|+.|.+++|+.
T Consensus 327 e~yvqRiGRtGRaGr~G~ai~~v~ 350 (629)
T PRK11634 327 ESYVHRIGRTGRAGRAGRALLFVE 350 (629)
T ss_pred HHHHHHhccccCCCCcceEEEEec
Confidence 999999999999999999998864
No 12
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4e-55 Score=415.54 Aligned_cols=348 Identities=33% Similarity=0.495 Sum_probs=293.4
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEE
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vl 97 (444)
++|+++++++.+.+.| +.+||..|+++|.++++.++.++++++++|||+|||++|++++++.+...+.. .....++|
T Consensus 1 ~~f~~l~l~~~l~~~l-~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~l 77 (434)
T PRK11192 1 TTFSELELDESLLEAL-QDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRIL 77 (434)
T ss_pred CCHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEE
Confidence 4799999999999999 66799999999999999999999999999999999999999999988654322 23456899
Q ss_pred EEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEec
Q 013392 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (444)
Q Consensus 98 il~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE 177 (444)
|++|+++|+.|+.+.+..+....+ .....+.++.........+..+++|+|+||++|++.+.. ..+.+.++++||+||
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDE 155 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHTH-LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDE 155 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccCC-cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEEC
Confidence 999999999999999999887655 556677778777777777778899999999999998876 666778999999999
Q ss_pred hhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecch-hhHHHHHhhcCCCeEEcccCcCCCCCccc
Q 013392 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (444)
Q Consensus 178 ~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (444)
||++.+.++...+..+...++. ..|+++||||++. ....+....+.++..+......
T Consensus 156 ah~~l~~~~~~~~~~i~~~~~~---------------~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~------- 213 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAETRW---------------RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR------- 213 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhCcc---------------ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-------
Confidence 9999999999988888877765 7799999999975 4667777777777665443321
Q ss_pred ccccCccccccccccCCCccccccCccccccccceeeEEEcCC-CCcHHHHHHHHHhhcccccCceEEEEecccchhhhh
Q 013392 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (444)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l 335 (444)
.....+.+.+..++. ..+...+..+++. ....++||||++++.++.+
T Consensus 214 ----------------------------~~~~~i~~~~~~~~~~~~k~~~l~~l~~~----~~~~~~lVF~~s~~~~~~l 261 (434)
T PRK11192 214 ----------------------------RERKKIHQWYYRADDLEHKTALLCHLLKQ----PEVTRSIVFVRTRERVHEL 261 (434)
T ss_pred ----------------------------ccccCceEEEEEeCCHHHHHHHHHHHHhc----CCCCeEEEEeCChHHHHHH
Confidence 011223344444432 4455555555543 4567999999999999999
Q ss_pred hhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCC
Q 013392 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (444)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~ 415 (444)
+..|... ++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|+.|.
T Consensus 262 ~~~L~~~-----------------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~ 324 (434)
T PRK11192 262 AGWLRKA-----------------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPR 324 (434)
T ss_pred HHHHHhC-----------------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCC
Confidence 9999876 88999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhcccccccCCCcccccceEE
Q 013392 416 EATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 416 s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+...|+||+||+||.|..|.+++++.
T Consensus 325 s~~~yiqr~GR~gR~g~~g~ai~l~~ 350 (434)
T PRK11192 325 SADTYLHRIGRTGRAGRKGTAISLVE 350 (434)
T ss_pred CHHHHhhcccccccCCCCceEEEEec
Confidence 99999999999999999999999873
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-56 Score=365.95 Aligned_cols=350 Identities=29% Similarity=0.472 Sum_probs=313.1
Q ss_pred hhccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCC
Q 013392 12 KEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS 91 (444)
Q Consensus 12 ~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~ 91 (444)
+.+.-..+|+++||.+++.+.+ -.+||+.|..+|+.|++.+++|+|++.++..|+|||.++.+.+++.+... .
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgi-Y~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~------~ 93 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGI-YAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS------V 93 (400)
T ss_pred cCcccccchhhcCchHHHHHHH-HHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc------c
Confidence 3456678999999999999999 88899999999999999999999999999999999999988888766542 2
Q ss_pred CCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCcc
Q 013392 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLR 171 (444)
Q Consensus 92 ~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~ 171 (444)
+..+++++.||++|+.|..+.+..++...+ .....+.+|.+..++...+..+.+++.+||.++++++++ ..+.-..+.
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mn-vq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr-~~L~tr~vk 171 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMN-VQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR-RSLRTRAVK 171 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhccccc-ceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh-cccccccee
Confidence 346799999999999999999999887766 555666778888888888889999999999999999987 555557899
Q ss_pred EEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCC
Q 013392 172 WIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP 251 (444)
Q Consensus 172 lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (444)
++|+||++.+++.++...+..+++.++. ..|++++|||++.........++.+|+.+.+..+++
T Consensus 172 mlVLDEaDemL~kgfk~Qiydiyr~lp~---------------~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdel- 235 (400)
T KOG0328|consen 172 MLVLDEADEMLNKGFKEQIYDIYRYLPP---------------GAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDEL- 235 (400)
T ss_pred EEEeccHHHHHHhhHHHHHHHHHHhCCC---------------CceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCC-
Confidence 9999999999999999999999999988 899999999999999999999999999988877752
Q ss_pred CCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCC-CcHHHHHHHHHhhcccccCceEEEEecccc
Q 013392 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG-SRLAVLLSILKHLFDTEVSQKLVVFFSTCD 330 (444)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~ 330 (444)
..+.+.++++.+..+ +|...|.++-..+ .-..++|||+++.
T Consensus 236 ----------------------------------tlEgIKqf~v~ve~EewKfdtLcdLYd~L----tItQavIFcnTk~ 277 (400)
T KOG0328|consen 236 ----------------------------------TLEGIKQFFVAVEKEEWKFDTLCDLYDTL----TITQAVIFCNTKR 277 (400)
T ss_pred ----------------------------------chhhhhhheeeechhhhhHhHHHHHhhhh----ehheEEEEecccc
Confidence 234577888887655 5888888776553 3468999999999
Q ss_pred hhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEE
Q 013392 331 AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ 410 (444)
Q Consensus 331 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~ 410 (444)
.+.-+.+.+++. ++.+..+||+|++++|..++.+|++|+.+|||+|++-++|+|+|.+++||+
T Consensus 278 kVdwLtekm~~~-----------------nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN 340 (400)
T KOG0328|consen 278 KVDWLTEKMREA-----------------NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN 340 (400)
T ss_pred hhhHHHHHHHhh-----------------CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe
Confidence 999999999987 889999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 411 YDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 411 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
|+.|.+.+.|+||+||.||+|++|+++.|+.
T Consensus 341 YDLP~nre~YIHRIGRSGRFGRkGvainFVk 371 (400)
T KOG0328|consen 341 YDLPNNRELYIHRIGRSGRFGRKGVAINFVK 371 (400)
T ss_pred cCCCccHHHHhhhhccccccCCcceEEEEec
Confidence 9999999999999999999999999999974
No 14
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-55 Score=384.29 Aligned_cols=356 Identities=33% Similarity=0.563 Sum_probs=313.9
Q ss_pred cCCccccCCC--HHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCc
Q 013392 17 SCSFSSLGLH--STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (444)
Q Consensus 17 ~~~~~~~~l~--~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (444)
...|++++.+ +|+.+.+ +.+||..++|+|..+++.+++++|+++.++||||||+++++|++..+.++..+.+.. .-
T Consensus 3 ~~~~~~l~~~L~~~l~~~l-~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~-~v 80 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEAL-DESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG-QV 80 (567)
T ss_pred CcchhhcCCCccHHHHHHH-HhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc-ce
Confidence 4567777655 9999999 777999999999999999999999999999999999999999999996655543322 34
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHh-cCCCcEEEeCchHHHHHHhc-cCccccCCccE
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARL-RKGISILVATPGRLLDHLKH-TSSFLHTNLRW 172 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~l~~-~~~~~~~~~~l 172 (444)
.+|||+||++|+.|..+.+..+..++.......+.||.+..++...+ ..+++|+|+||.+|.+++++ ...+.+.++.+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~ 160 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEI 160 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccce
Confidence 68999999999999999999998887777777777887777665555 45688999999999999987 34456679999
Q ss_pred EEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCC
Q 013392 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPE 252 (444)
Q Consensus 173 vV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (444)
+|+||||++++.+|.+.++.|+..+|. +++.=+||||-......+...++.+|..+.+.....
T Consensus 161 LVLDEADrLldmgFe~~~n~ILs~LPK---------------QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~-- 223 (567)
T KOG0345|consen 161 LVLDEADRLLDMGFEASVNTILSFLPK---------------QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSK-- 223 (567)
T ss_pred EEecchHhHhcccHHHHHHHHHHhccc---------------ccccccccchhhHHHHHHHHhhccCceeeeeccccc--
Confidence 999999999999999999999999998 888889999999999999999999999987776541
Q ss_pred CcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchh
Q 013392 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (444)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~ 332 (444)
...|..+..+|..+++..|...+.++|.. ....++|||.+++..+
T Consensus 224 -------------------------------~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~----~~~kK~iVFF~TCasV 268 (567)
T KOG0345|consen 224 -------------------------------SATPSSLALEYLVCEADEKLSQLVHLLNN----NKDKKCIVFFPTCASV 268 (567)
T ss_pred -------------------------------ccCchhhcceeeEecHHHHHHHHHHHHhc----cccccEEEEecCcchH
Confidence 11456788889999999999999999987 4567999999999999
Q ss_pred hhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEcc
Q 013392 333 DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (444)
Q Consensus 333 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~ 412 (444)
+.....+... .++..+..+||.+++..|..++++|.+....+|+|||++.+|+|+|+++.||+||
T Consensus 269 eYf~~~~~~~---------------l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~D 333 (567)
T KOG0345|consen 269 EYFGKLFSRL---------------LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFD 333 (567)
T ss_pred HHHHHHHHHH---------------hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecC
Confidence 9999998776 2377899999999999999999999997888999999999999999999999999
Q ss_pred CCCCcchhhhcccccccCCCcccccceEE
Q 013392 413 SAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 413 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+|.++..|+||.||++|.|+.|.++.|+-
T Consensus 334 pP~~~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 334 PPKDPSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred CCCChhHHHhhcchhhhccCccceEEEec
Confidence 99999999999999999999999998873
No 15
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-54 Score=413.88 Aligned_cols=355 Identities=28% Similarity=0.408 Sum_probs=293.1
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCC-CCCC
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRID-RSSG 93 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~-~~~~ 93 (444)
.....|.+++|++.+.+.| ..+||..|+++|.++++.+++|+|+++.+|||+|||++|++++++.+........ ..+.
T Consensus 84 ~~~~~f~~~~l~~~l~~~l-~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~ 162 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAI-HDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGE 162 (475)
T ss_pred cCCCCHhHCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCC
Confidence 3456799999999999999 5679999999999999999999999999999999999999999998876432211 1125
Q ss_pred ceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHh-cCCCcEEEeCchHHHHHHhccCccccCCccE
Q 013392 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARL-RKGISILVATPGRLLDHLKHTSSFLHTNLRW 172 (444)
Q Consensus 94 ~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~l~~~~~~~~~~~~l 172 (444)
.++|||+|+++|+.|+.+.++.+....+ .....+.++.........+ ...++|+|+||++|+.++.. +...++.+++
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~ 240 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTG-LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEV 240 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCC-CEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCce
Confidence 7899999999999999999999877655 3445566665555554444 45689999999999988776 5566789999
Q ss_pred EEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCC
Q 013392 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPE 252 (444)
Q Consensus 173 vV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (444)
||+||+|++.+.++...+..+...++... ..|++++|||++.....+...+..++..+.+.....
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~-------------~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~-- 305 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKE-------------ERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV-- 305 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCC-------------CceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC--
Confidence 99999999999888888888888775432 569999999999888888888877777654433210
Q ss_pred CcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchh
Q 013392 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (444)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~ 332 (444)
....+.+.+..+....+...+..++.. ....++||||++++.+
T Consensus 306 ---------------------------------~~~~~~~~~~~~~~~~k~~~l~~ll~~----~~~~~~IVF~~s~~~~ 348 (475)
T PRK01297 306 ---------------------------------ASDTVEQHVYAVAGSDKYKLLYNLVTQ----NPWERVMVFANRKDEV 348 (475)
T ss_pred ---------------------------------CCCcccEEEEEecchhHHHHHHHHHHh----cCCCeEEEEeCCHHHH
Confidence 112233444455566676677766654 3456999999999999
Q ss_pred hhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEcc
Q 013392 333 DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (444)
Q Consensus 333 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~ 412 (444)
+.+++.|... ++.+..+||+++.++|.++++.|++|+.++||||+++++|+|+|++++||+++
T Consensus 349 ~~l~~~L~~~-----------------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~ 411 (475)
T PRK01297 349 RRIEERLVKD-----------------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFT 411 (475)
T ss_pred HHHHHHHHHc-----------------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeC
Confidence 9999999776 78899999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhcccccccCCCcccccceEE
Q 013392 413 SAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 413 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
.|.|..+|+||+||+||.|+.|.+++|+.
T Consensus 412 ~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~ 440 (475)
T PRK01297 412 LPEDPDDYVHRIGRTGRAGASGVSISFAG 440 (475)
T ss_pred CCCCHHHHHHhhCccCCCCCCceEEEEec
Confidence 99999999999999999999999998864
No 16
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-56 Score=391.77 Aligned_cols=348 Identities=36% Similarity=0.571 Sum_probs=316.0
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
..+|.+++|+.++.+.+ ..+||..|+|+|...||..+.|+|+.-++.||+|||-+|++|++.+++-.+.+ -...+|
T Consensus 180 ~~sF~~mNLSRPlLka~-~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---~~~TRV 255 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKAC-STLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---VAATRV 255 (691)
T ss_pred hhhHHhcccchHHHHHH-HhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc---CcceeE
Confidence 34899999999999999 88899999999999999999999999999999999999999999999876655 346789
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
||++||++|+.|.....+++..... +..+...||.+...+...+.+.+||+|+||.+|.+++.....|.++++..+|+|
T Consensus 256 LVL~PTRELaiQv~sV~~qlaqFt~-I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 256 LVLVPTRELAIQVHSVTKQLAQFTD-ITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLD 334 (691)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhcc-ceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEec
Confidence 9999999999999999888876555 788889999999999999999999999999999999999999999999999999
Q ss_pred chhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCccc
Q 013392 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (444)
Q Consensus 177 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (444)
|+++|++.+|...+..+....+. .+|.++||||++..+..+..+.+..|+.+.++...
T Consensus 335 EADRMLeegFademnEii~lcpk---------------~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~------- 392 (691)
T KOG0338|consen 335 EADRMLEEGFADEMNEIIRLCPK---------------NRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNK------- 392 (691)
T ss_pred hHHHHHHHHHHHHHHHHHHhccc---------------cccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcc-------
Confidence 99999999999999999999988 99999999999999999999999999998776653
Q ss_pred ccccCccccccccccCCCccccccCccccccccceeeEEEcC---CCCcHHHHHHHHHhhcccccCceEEEEecccchhh
Q 013392 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP---CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (444)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~ 333 (444)
.....+.+.|+.+. ...+-.++..++...+ ..+++||+.+++.|+
T Consensus 393 ----------------------------~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf----~~~~ivFv~tKk~AH 440 (691)
T KOG0338|consen 393 ----------------------------DTAPKLTQEFIRIRPKREGDREAMLASLITRTF----QDRTIVFVRTKKQAH 440 (691)
T ss_pred ----------------------------ccchhhhHHHheeccccccccHHHHHHHHHHhc----ccceEEEEehHHHHH
Confidence 33445566666553 3346677777887654 469999999999999
Q ss_pred hhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC
Q 013392 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (444)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~ 413 (444)
.+.-+|--. |.++..+||++++.+|-+.++.|+++++++||||+.+++|+||+.+..||+|..
T Consensus 441 Rl~IllGLl-----------------gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~m 503 (691)
T KOG0338|consen 441 RLRILLGLL-----------------GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAM 503 (691)
T ss_pred HHHHHHHHh-----------------hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccC
Confidence 998887655 899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhcccccccCCCcccccceE
Q 013392 414 AGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 414 ~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
|.+...|+||+||+.|+|+.|-+++|+
T Consensus 504 P~t~e~Y~HRVGRTARAGRaGrsVtlv 530 (691)
T KOG0338|consen 504 PKTIEHYLHRVGRTARAGRAGRSVTLV 530 (691)
T ss_pred chhHHHHHHHhhhhhhcccCcceEEEe
Confidence 999999999999999999999999986
No 17
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.4e-55 Score=388.00 Aligned_cols=357 Identities=40% Similarity=0.648 Sum_probs=323.9
Q ss_pred ccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCC
Q 013392 14 IFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 93 (444)
Q Consensus 14 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~ 93 (444)
......|++..|++...+++ +.+||..++++|+..++.++.|+|++..+-||+|||+++++|+++.+...+... .++
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi-~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~--r~~ 154 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAI-KEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP--RNG 154 (543)
T ss_pred hhhhhHhhccccCHHHHHHH-HhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC--CCC
Confidence 44467899999999999999 888999999999999999999999999999999999999999999987755443 267
Q ss_pred ceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEE
Q 013392 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (444)
Q Consensus 94 ~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lv 173 (444)
..++|++||++|+.|.+.+++++...........+.+|.....+.+++..+++|+|+||.+|.++++..+.+....++++
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 88999999999999999999999988866788888999999999999989999999999999999999888888888999
Q ss_pred EEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCC-CeEEcccCcCCCC
Q 013392 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKKLPE 252 (444)
Q Consensus 174 V~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 252 (444)
|+||+|++++.+|.+.+..+...++. .+|.++||||.+..+..++...+.. +.++.......+
T Consensus 235 vlDEADrlLd~GF~~di~~Ii~~lpk---------------~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~- 298 (543)
T KOG0342|consen 235 VLDEADRLLDIGFEEDVEQIIKILPK---------------QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGER- 298 (543)
T ss_pred EeecchhhhhcccHHHHHHHHHhccc---------------cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCc-
Confidence 99999999999999999999999997 9999999999999999988877655 777776665421
Q ss_pred CcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchh
Q 013392 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (444)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~ 332 (444)
.....+.+.++.++...++..+..+|++.. ...+++|||++...+
T Consensus 299 --------------------------------~The~l~Qgyvv~~~~~~f~ll~~~LKk~~---~~~KiiVF~sT~~~v 343 (543)
T KOG0342|consen 299 --------------------------------ETHERLEQGYVVAPSDSRFSLLYTFLKKNI---KRYKIIVFFSTCMSV 343 (543)
T ss_pred --------------------------------chhhcccceEEeccccchHHHHHHHHHHhc---CCceEEEEechhhHH
Confidence 223567788889999988999999998863 338999999999999
Q ss_pred hhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEcc
Q 013392 333 DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (444)
Q Consensus 333 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~ 412 (444)
..++++|+.. +.++..+||+.++..|..+..+|++.+.-||+||++..+|+|+|+++.|++|+
T Consensus 344 k~~~~lL~~~-----------------dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~ 406 (543)
T KOG0342|consen 344 KFHAELLNYI-----------------DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYD 406 (543)
T ss_pred HHHHHHHhhc-----------------CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeC
Confidence 9999999876 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhcccccccCCCcccccceEE
Q 013392 413 SAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 413 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+|.+..+|+||+||++|.|+.|.+++++.
T Consensus 407 ~P~d~~~YIHRvGRTaR~gk~G~alL~l~ 435 (543)
T KOG0342|consen 407 PPSDPEQYIHRVGRTAREGKEGKALLLLA 435 (543)
T ss_pred CCCCHHHHHHHhccccccCCCceEEEEeC
Confidence 99999999999999999999999999874
No 18
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3e-55 Score=388.02 Aligned_cols=368 Identities=29% Similarity=0.474 Sum_probs=327.4
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCC---CCCC
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPR---IDRS 91 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~---~~~~ 91 (444)
...-+|++.+++.++++.+ +..||..|+|+|+++++..++++|+|..+.||||||.+++++++..+...++- ....
T Consensus 242 nplrnwEE~~~P~e~l~~I-~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~ 320 (673)
T KOG0333|consen 242 NPLRNWEESGFPLELLSVI-KKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNI 320 (673)
T ss_pred ccccChhhcCCCHHHHHHH-HhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcc
Confidence 4556899999999999988 77799999999999999999999999999999999999999999888765531 2334
Q ss_pred CCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCcc
Q 013392 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLR 171 (444)
Q Consensus 92 ~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~ 171 (444)
.++++++++||++|++|..++-.++++.++ +....+.+|....+.--.+..++.|+|+||..|.+.+.. ..+.++++.
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg-~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len-r~lvl~qct 398 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLG-IRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN-RYLVLNQCT 398 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhccccc-ceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH-HHHHhccCc
Confidence 588999999999999999999999998887 666777788888888888999999999999999999987 666778999
Q ss_pred EEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCC----------CCCcccccceeEEEEEeecchhhHHHHHhhcCCCe
Q 013392 172 WIIFDEADRILELGFGKEIEEILDILGSRNIGSIG----------EGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV 241 (444)
Q Consensus 172 lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~ 241 (444)
++|+||++++.+.+|...+..++..++..+...-. +........+|.++||||.++....+...++.+|.
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 99999999999999999999999999986654322 12334446699999999999999999999999999
Q ss_pred EEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCce
Q 013392 242 LIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQK 321 (444)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~ 321 (444)
++.+.... .....+.+..+.++.+.|...|..+|... ...+
T Consensus 479 ~vtig~~g-----------------------------------k~~~rveQ~v~m~~ed~k~kkL~eil~~~----~~pp 519 (673)
T KOG0333|consen 479 VVTIGSAG-----------------------------------KPTPRVEQKVEMVSEDEKRKKLIEILESN----FDPP 519 (673)
T ss_pred EEEeccCC-----------------------------------CCccchheEEEEecchHHHHHHHHHHHhC----CCCC
Confidence 98766553 22345778888888999999999999874 3569
Q ss_pred EEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCC
Q 013392 322 LVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLD 401 (444)
Q Consensus 322 ~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~d 401 (444)
+|||+|+++.|+.+++.|.+. ++.+..+||+-++++|+..++.|+.|..+|||||+++++|+|
T Consensus 520 iIIFvN~kk~~d~lAk~LeK~-----------------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGID 582 (673)
T KOG0333|consen 520 IIIFVNTKKGADALAKILEKA-----------------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGID 582 (673)
T ss_pred EEEEEechhhHHHHHHHHhhc-----------------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCC
Confidence 999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 402 FPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 402 i~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+|++++||+|+.+.++.+|.|||||+||+|+.|.+++|+.
T Consensus 583 IpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt 622 (673)
T KOG0333|consen 583 IPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLT 622 (673)
T ss_pred CCccceeeecchhhhHHHHHHHhccccccccCceeEEEec
Confidence 9999999999999999999999999999999999999975
No 19
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-55 Score=369.85 Aligned_cols=351 Identities=32% Similarity=0.528 Sum_probs=311.2
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
..+|..+||++|+.+.+ +.+|+..|+|+|..+++.++.|+|+|-++.||||||..+.+++++++... .++-.+
T Consensus 6 ~~~F~~LGl~~Wlve~l-~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed------P~giFa 78 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQL-KALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED------PYGIFA 78 (442)
T ss_pred cCchhhcCccHHHHHHH-HHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC------CCcceE
Confidence 46899999999999999 77799999999999999999999999999999999999999999998763 457789
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhcc---CccccCCccEE
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT---SSFLHTNLRWI 173 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~---~~~~~~~~~lv 173 (444)
+|++||++|+.|..++|...++..+ ....++++|...-.+...+...++++|+||+++..++.+. ..+.++++.++
T Consensus 79 lvlTPTrELA~QiaEQF~alGk~l~-lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkfl 157 (442)
T KOG0340|consen 79 LVLTPTRELALQIAEQFIALGKLLN-LKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFL 157 (442)
T ss_pred EEecchHHHHHHHHHHHHHhccccc-ceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeE
Confidence 9999999999999999999877555 6778888888888888889999999999999999998875 34466789999
Q ss_pred EEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCC
Q 013392 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (444)
Q Consensus 174 V~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (444)
|+|||+++++..|.+.+..+...++. .+|.++||||+.+....+.......+..+..+.
T Consensus 158 VlDEADrvL~~~f~d~L~~i~e~lP~---------------~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~------ 216 (442)
T KOG0340|consen 158 VLDEADRVLAGCFPDILEGIEECLPK---------------PRQTLLFSATITDTIKQLFGCPITKSIAFELEV------ 216 (442)
T ss_pred EecchhhhhccchhhHHhhhhccCCC---------------ccceEEEEeehhhHHHHhhcCCcccccceEEec------
Confidence 99999999999999999999999987 889999999999877666654443322211111
Q ss_pred cccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhh
Q 013392 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (444)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~ 333 (444)
......+..+.+.|+.++...|-.++..+|+.+.+. ....++||+++..+|+
T Consensus 217 ---------------------------~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~-~~~simIFvnttr~cQ 268 (442)
T KOG0340|consen 217 ---------------------------IDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENK-ENGSIMIFVNTTRECQ 268 (442)
T ss_pred ---------------------------cCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhc-cCceEEEEeehhHHHH
Confidence 111245677889999999999999999999987543 5789999999999999
Q ss_pred hhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC
Q 013392 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (444)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~ 413 (444)
.++..|+.. +..+..+|+.|++.+|-..+.+|+++..+||||||++++|+|+|.++.|++++.
T Consensus 269 ~l~~~l~~l-----------------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~di 331 (442)
T KOG0340|consen 269 LLSMTLKNL-----------------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDI 331 (442)
T ss_pred HHHHHHhhh-----------------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCC
Confidence 999999988 889999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhcccccccCCCcccccceEE
Q 013392 414 AGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 414 ~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
|.++.+|+||.||..|+|+.|-+++|+.
T Consensus 332 Pr~P~~yiHRvGRtARAGR~G~aiSivt 359 (442)
T KOG0340|consen 332 PRDPKDYIHRVGRTARAGRKGMAISIVT 359 (442)
T ss_pred CCCHHHHHHhhcchhcccCCcceEEEec
Confidence 9999999999999999999999999985
No 20
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4e-53 Score=399.55 Aligned_cols=344 Identities=27% Similarity=0.428 Sum_probs=283.9
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEE
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vl 97 (444)
.+|+++++++++.+.| ..+||..|+++|.++++.+++++++++++|||+|||++|++++++.+... ..+.++|
T Consensus 28 ~~~~~l~l~~~~~~~l-~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~------~~~~~~l 100 (401)
T PTZ00424 28 DSFDALKLNEDLLRGI-YSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD------LNACQAL 100 (401)
T ss_pred CCHhhCCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC------CCCceEE
Confidence 8899999999999999 67799999999999999999999999999999999999999998877431 2356799
Q ss_pred EEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEec
Q 013392 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (444)
Q Consensus 98 il~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE 177 (444)
|++|+++|+.|+.+.+..++.... .......++....+....+..+++|+|+||+++.+.+.. ....++++++||+||
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViDE 178 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLK-VRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILDE 178 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcC-ceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEec
Confidence 999999999999999988876543 334455566666666777777889999999999998876 455678999999999
Q ss_pred hhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccc
Q 013392 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (444)
Q Consensus 178 ~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (444)
+|++.+.++...+..++..++. ..|++++|||+++....+...+..++..+.......
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~------- 236 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPP---------------DVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL------- 236 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCC---------------CcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc-------
Confidence 9999988888888888877765 789999999999887777777776665543322110
Q ss_pred cccCccccccccccCCCccccccCccccccccceeeEEEcCC-CCcHHHHHHHHHhhcccccCceEEEEecccchhhhhh
Q 013392 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (444)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~ 336 (444)
....+.+.+...+. ..+...+..+++. ....++||||+++.+++.++
T Consensus 237 ----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ivF~~t~~~~~~l~ 284 (401)
T PTZ00424 237 ----------------------------TLEGIRQFYVAVEKEEWKFDTLCDLYET----LTITQAIIYCNTRRKVDYLT 284 (401)
T ss_pred ----------------------------ccCCceEEEEecChHHHHHHHHHHHHHh----cCCCeEEEEecCcHHHHHHH
Confidence 01223334444332 2244444444432 34568999999999999999
Q ss_pred hhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCC
Q 013392 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (444)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s 416 (444)
+.+... +..+..+||+++..+|..++++|++|+.+|||||+++++|+|+|++++||+++.|.+
T Consensus 285 ~~l~~~-----------------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s 347 (401)
T PTZ00424 285 KKMHER-----------------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPAS 347 (401)
T ss_pred HHHHHC-----------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCC
Confidence 999876 788999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccccccCCCcccccceEE
Q 013392 417 ATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 417 ~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
...|+||+||+||.|+.|.|+.++.
T Consensus 348 ~~~y~qr~GRagR~g~~G~~i~l~~ 372 (401)
T PTZ00424 348 PENYIHRIGRSGRFGRKGVAINFVT 372 (401)
T ss_pred HHHEeecccccccCCCCceEEEEEc
Confidence 9999999999999999999998863
No 21
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-54 Score=384.12 Aligned_cols=353 Identities=35% Similarity=0.592 Sum_probs=317.3
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
-..|++++++....+.|+.. +|..|+.+|+++|+..+.|+|++-.+-||||||+++++|+++.+.+ .++....|-.+
T Consensus 68 ~~kF~dlpls~~t~kgLke~-~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r--~kWs~~DGlGa 144 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEA-KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYR--LKWSPTDGLGA 144 (758)
T ss_pred hhhHHhCCCchHHHHhHhhc-CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHH--cCCCCCCCcee
Confidence 34799999999999999666 9999999999999999999999999999999999999999998864 33344567789
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
|||.||++|+.|..+.+.+.+.+.. ...+.+.||.....+.. .-++.+|+||||.+|+..+.....+.-.++-++|+|
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~-fSaGLiiGG~~~k~E~e-Ri~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLD 222 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHD-FSAGLIIGGKDVKFELE-RISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLD 222 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccc-cccceeecCchhHHHHH-hhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEec
Confidence 9999999999999999999988766 44466666766555443 345689999999999999998888888899999999
Q ss_pred chhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCccc
Q 013392 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (444)
Q Consensus 177 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (444)
|++++++.+|...++.+...++. .+|.++||||.+.....++++.+.+|.++.+....
T Consensus 223 EADR~LDMGFk~tL~~Ii~~lP~---------------~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a------- 280 (758)
T KOG0343|consen 223 EADRMLDMGFKKTLNAIIENLPK---------------KRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENA------- 280 (758)
T ss_pred cHHHHHHHhHHHHHHHHHHhCCh---------------hheeeeeecccchhHHHHHHhhcCCCcEEEEeccc-------
Confidence 99999999999999999999998 99999999999999999999999999998776332
Q ss_pred ccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhh
Q 013392 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (444)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~ 336 (444)
....|.++.++|+.++...|+.+|+.+|+.+ ...+.|||+++++++..++
T Consensus 281 --------------------------~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~sh----lk~K~iVF~SscKqvkf~~ 330 (758)
T KOG0343|consen 281 --------------------------VAATPSNLQQSYVIVPLEDKIDMLWSFIKSH----LKKKSIVFLSSCKQVKFLY 330 (758)
T ss_pred --------------------------cccChhhhhheEEEEehhhHHHHHHHHHHhc----cccceEEEEehhhHHHHHH
Confidence 1245788999999999999999999999874 4679999999999999999
Q ss_pred hhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCC
Q 013392 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (444)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s 416 (444)
+.+++.. ||.+...+||.|++..|.++..+|......||+||+++++|+|+|.++.||+++.|.+
T Consensus 331 e~F~rlr---------------pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPed 395 (758)
T KOG0343|consen 331 EAFCRLR---------------PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPED 395 (758)
T ss_pred HHHHhcC---------------CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchh
Confidence 9999875 4999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccccccCCCcccccceEE
Q 013392 417 ATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 417 ~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+.+|+||+||+.|.+..|.++.++.
T Consensus 396 v~tYIHRvGRtAR~~~~G~sll~L~ 420 (758)
T KOG0343|consen 396 VDTYIHRVGRTARYKERGESLLMLT 420 (758)
T ss_pred HHHHHHHhhhhhcccCCCceEEEEc
Confidence 9999999999999999999998764
No 22
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-55 Score=365.11 Aligned_cols=346 Identities=29% Similarity=0.471 Sum_probs=318.6
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCc
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (444)
-+.+-|+++.|-.++...+.+. ||+.|+|+|.++++..++|+|++..+..|+|||-++++|+++++... ...-
T Consensus 82 TkG~efEd~~Lkr~LLmgIfe~-G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~------~~~I 154 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGIFEK-GFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK------KNVI 154 (459)
T ss_pred ccCccHHHhhhhHHHHHHHHHh-ccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc------ccce
Confidence 4567899999999999999555 99999999999999999999999999999999999999999988552 2345
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEE
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV 174 (444)
++++++|+++|+.|..+.+.++.++.+ ....+.++|++..++.-++....+++|+||.+++++..+ +.-.++.+.++|
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh~~-i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV 232 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKHLG-IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILV 232 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhcccC-eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEE
Confidence 689999999999999999999998887 777888899999999988999999999999999999886 666788999999
Q ss_pred EechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCc
Q 013392 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (444)
Q Consensus 175 ~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (444)
+||++.+++..|...++.++..++. .+|++++|||+|.....+...++.+|..+.+..+
T Consensus 233 ~DEADKlLs~~F~~~~e~li~~lP~---------------~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e------ 291 (459)
T KOG0326|consen 233 MDEADKLLSVDFQPIVEKLISFLPK---------------ERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE------ 291 (459)
T ss_pred echhhhhhchhhhhHHHHHHHhCCc---------------cceeeEEecccchhHHHHHHHhccCcceeehhhh------
Confidence 9999999999999999999999998 9999999999999999999999999999877665
Q ss_pred ccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhh
Q 013392 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (444)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~ 334 (444)
..+..+.++|-.+.+..|+..|..+...+ +-...||||++.+.++.
T Consensus 292 ------------------------------Ltl~GvtQyYafV~e~qKvhCLntLfskL----qINQsIIFCNS~~rVEL 337 (459)
T KOG0326|consen 292 ------------------------------LTLKGVTQYYAFVEERQKVHCLNTLFSKL----QINQSIIFCNSTNRVEL 337 (459)
T ss_pred ------------------------------hhhcchhhheeeechhhhhhhHHHHHHHh----cccceEEEeccchHhHH
Confidence 23467888999999999999988887764 34578999999999999
Q ss_pred hhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCC
Q 013392 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (444)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~ 414 (444)
++..+.+. |+.++.+|+.|-++.|++++..|++|..+.||||+.+.+|+|++++++||+||.|
T Consensus 338 LAkKITel-----------------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfp 400 (459)
T KOG0326|consen 338 LAKKITEL-----------------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFP 400 (459)
T ss_pred HHHHHHhc-----------------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCC
Confidence 99999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcccccccCCCcccccceEE
Q 013392 415 GEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 415 ~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
++.++|.||+||.||+|..|.+|++|.
T Consensus 401 k~aEtYLHRIGRsGRFGhlGlAInLit 427 (459)
T KOG0326|consen 401 KNAETYLHRIGRSGRFGHLGLAINLIT 427 (459)
T ss_pred CCHHHHHHHccCCccCCCcceEEEEEe
Confidence 999999999999999999999999985
No 23
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-54 Score=370.90 Aligned_cols=359 Identities=30% Similarity=0.456 Sum_probs=320.6
Q ss_pred hccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCC
Q 013392 13 EIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 92 (444)
Q Consensus 13 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~ 92 (444)
++.+-.+|++++|.+++++++ ...||+.|+-+|..+|+.++.|+|++..+.||||||.+|++|+++.+.....-.....
T Consensus 14 ee~~~ktFe~~gLD~RllkAi-~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~ 92 (569)
T KOG0346|consen 14 EESKEKTFEEFGLDSRLLKAI-TKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQ 92 (569)
T ss_pred hhhhhccHHHhCCCHHHHHHH-HHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccc
Confidence 344447999999999999999 6669999999999999999999999999999999999999999999988666555667
Q ss_pred CceEEEEeccHHHHHHHHHHHHHHhcccC-ceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCcc
Q 013392 93 GTFALVLVPTRELCLQVYEILHKLLHRFH-WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLR 171 (444)
Q Consensus 93 ~~~vlil~P~~~L~~q~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~ 171 (444)
+..++|++||++|++|.+..+.++...++ .+....++++.+.......+...++|+|+||.++..++........+.+.
T Consensus 93 ~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~ 172 (569)
T KOG0346|consen 93 GPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLS 172 (569)
T ss_pred cceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhhee
Confidence 88999999999999999999998876655 23344455556666667778888999999999999999874446778999
Q ss_pred EEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCC
Q 013392 172 WIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP 251 (444)
Q Consensus 172 lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (444)
++|+||++.++.-++.+.+..+...++. ..|.+++|||++..+..+.++++.+|..+.+.....
T Consensus 173 ~LVvDEADLllsfGYeedlk~l~~~LPr---------------~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el- 236 (569)
T KOG0346|consen 173 FLVVDEADLLLSFGYEEDLKKLRSHLPR---------------IYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGEL- 236 (569)
T ss_pred eEEechhhhhhhcccHHHHHHHHHhCCc---------------hhhheeehhhhhhHHHHHHHHhccCCeEEEeccccC-
Confidence 9999999999999999999999999997 899999999999999999999999999988877753
Q ss_pred CCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccch
Q 013392 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (444)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~ 331 (444)
..+.++.++.+.|....|...+..+++.. --.++.|||+|+++.
T Consensus 237 ---------------------------------~~~dqL~Qy~v~cse~DKflllyallKL~---LI~gKsliFVNtIdr 280 (569)
T KOG0346|consen 237 ---------------------------------PNPDQLTQYQVKCSEEDKFLLLYALLKLR---LIRGKSLIFVNTIDR 280 (569)
T ss_pred ---------------------------------CCcccceEEEEEeccchhHHHHHHHHHHH---HhcCceEEEEechhh
Confidence 34577899999999999999999988764 335799999999999
Q ss_pred hhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEec-----------------
Q 013392 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD----------------- 394 (444)
Q Consensus 332 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~----------------- 394 (444)
+.++.-.|+.. |++.++++|.++...|..++++|..|-.+++||||
T Consensus 281 ~YrLkLfLeqF-----------------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~ 343 (569)
T KOG0346|consen 281 CYRLKLFLEQF-----------------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSD 343 (569)
T ss_pred hHHHHHHHHHh-----------------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcccccccc
Confidence 99999999988 99999999999999999999999999999999999
Q ss_pred ------------------ccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 395 ------------------VAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 395 ------------------~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
-.++|+|+.++..|++||.|.+...|+||+||++|.|++|.+++|++
T Consensus 344 e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~ 408 (569)
T KOG0346|consen 344 EKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVS 408 (569)
T ss_pred ccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEec
Confidence 13579999999999999999999999999999999999999999985
No 24
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-53 Score=362.77 Aligned_cols=354 Identities=31% Similarity=0.487 Sum_probs=313.6
Q ss_pred cccCCccccC-CCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCC
Q 013392 15 FASCSFSSLG-LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 93 (444)
Q Consensus 15 ~~~~~~~~~~-l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~ 93 (444)
.-.++|++.+ ..+++.+.+ .+.||..|+|+|.+||+.+++|+|.+.++.||+|||++++++..-++..++...+.-++
T Consensus 216 nP~ctFddAFq~~pevmenI-kK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 216 NPVCTFDDAFQCYPEVMENI-KKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCcCcHHHHHhhhHHHHHHH-HhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 4566777654 678899999 56699999999999999999999999999999999999999998888777766666678
Q ss_pred ceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEE
Q 013392 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (444)
Q Consensus 94 ~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lv 173 (444)
+.+|+++|+++|+.|..-+..++. +...+..+++++.+.......+..+.+|+|+||.+|-++... +.+.+.++-++
T Consensus 295 p~~lvl~ptreLalqie~e~~kys--yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYl 371 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYS--YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYL 371 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhh--hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEE
Confidence 899999999999999998888864 346788999999999999999999999999999999997665 78888999999
Q ss_pred EEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCC
Q 013392 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (444)
Q Consensus 174 V~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (444)
|+||+++|++.+|...+.+++..++. .+|.++.|||+|.....+...++++|..+.+..-.+
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRP---------------DRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL--- 433 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRP---------------DRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDL--- 433 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCC---------------cceeeeecccCchHHHHHHHHhhhCceEEEecccce---
Confidence 99999999999999999999998887 999999999999999999999999998876654431
Q ss_pred cccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhh
Q 013392 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (444)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~ 333 (444)
.....+.+.++......|+..+..++... ....++||||..+..|.
T Consensus 434 -------------------------------~a~~sVkQ~i~v~~d~~k~~~~~~f~~~m---s~ndKvIiFv~~K~~AD 479 (629)
T KOG0336|consen 434 -------------------------------VAVKSVKQNIIVTTDSEKLEIVQFFVANM---SSNDKVIIFVSRKVMAD 479 (629)
T ss_pred -------------------------------eeeeeeeeeEEecccHHHHHHHHHHHHhc---CCCceEEEEEechhhhh
Confidence 22345667776666677887777777765 66789999999999999
Q ss_pred hhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC
Q 013392 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (444)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~ 413 (444)
-+..-|.-. |+..-.+||+-++.+|+..++.|++|+++|||||+.+++|+|+|++++|++|+.
T Consensus 480 ~LSSd~~l~-----------------gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDF 542 (629)
T KOG0336|consen 480 HLSSDFCLK-----------------GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDF 542 (629)
T ss_pred hccchhhhc-----------------ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCC
Confidence 988777654 888889999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhcccccccCCCcccccceEE
Q 013392 414 AGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 414 ~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
|.+++.|+||+||.||.|++|.+++|+.
T Consensus 543 P~nIeeYVHRvGrtGRaGr~G~sis~lt 570 (629)
T KOG0336|consen 543 PRNIEEYVHRVGRTGRAGRTGTSISFLT 570 (629)
T ss_pred CccHHHHHHHhcccccCCCCcceEEEEe
Confidence 9999999999999999999999999975
No 25
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-51 Score=369.12 Aligned_cols=356 Identities=33% Similarity=0.483 Sum_probs=311.6
Q ss_pred CccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCC--CCCCC--CCc
Q 013392 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSP--RIDRS--SGT 94 (444)
Q Consensus 19 ~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~--~~~~~--~~~ 94 (444)
.|++-.+.+.+...+ ++.++..|+|+|+.+++.+..|++.+.+|+||+|||.++++|++.++.+... ..... ..+
T Consensus 75 ~f~~~~l~~~l~~ni-~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 75 TFDEAILGEALAGNI-KRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred cccccchhHHHhhcc-ccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 788888999999999 6669999999999999999999999999999999999999999999877533 11112 247
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEE
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV 174 (444)
.++|++||++|+.|.+.+.+++.... .......+++............+++|+|+||.+|.++++. +.+.++.++++|
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~v 231 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCKFLV 231 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCcEEE
Confidence 89999999999999999999987654 4677888888888888899999999999999999999887 788889999999
Q ss_pred EechhHhhh-cchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCC-CeEEcccCcCCCC
Q 013392 175 FDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKKLPE 252 (444)
Q Consensus 175 ~DE~h~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 252 (444)
+||+++|++ .+|...+.++.......+ ...+|.++||||.+.....+...++.+ +..+.+....
T Consensus 232 LDEADrMlD~mgF~p~Ir~iv~~~~~~~-----------~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg--- 297 (482)
T KOG0335|consen 232 LDEADRMLDEMGFEPQIRKIVEQLGMPP-----------KNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG--- 297 (482)
T ss_pred ecchHHhhhhccccccHHHHhcccCCCC-----------ccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec---
Confidence 999999999 799999999998875432 228899999999999988888777765 5555544332
Q ss_pred CcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccC-----ceEEEEec
Q 013392 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVS-----QKLVVFFS 327 (444)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~-----~~~ivf~~ 327 (444)
....++.+....+....|...|++++......... ++++|||+
T Consensus 298 --------------------------------~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvE 345 (482)
T KOG0335|consen 298 --------------------------------STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVE 345 (482)
T ss_pred --------------------------------cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEee
Confidence 23467888899999999999999999865422122 38999999
Q ss_pred ccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcE
Q 013392 328 TCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407 (444)
Q Consensus 328 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~ 407 (444)
+++.+..+...|... ++++..+||..++.+|.+.++.|++|...+||||+++++|+|+|++++
T Consensus 346 t~~~~d~l~~~l~~~-----------------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~h 408 (482)
T KOG0335|consen 346 TKRGADELAAFLSSN-----------------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKH 408 (482)
T ss_pred ccchhhHHHHHHhcC-----------------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCce
Confidence 999999999999987 889999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCcchhhhcccccccCCCcccccceE
Q 013392 408 IIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 408 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
||+|+.|.+..+|+||+||+||.|+.|.+.+|+
T Consensus 409 VInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 409 VINYDMPADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred eEEeecCcchhhHHHhccccccCCCCceeEEEe
Confidence 999999999999999999999999999999886
No 26
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.6e-52 Score=357.84 Aligned_cols=349 Identities=31% Similarity=0.521 Sum_probs=306.8
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccC--CCCCCCCCce
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYS--PRIDRSSGTF 95 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~--~~~~~~~~~~ 95 (444)
.+|.++-.+..+.+.|+++ |+..|+|+|.+.++-+++|+|.|-.+-||||||+++.+|++-..+.+. -...++.++.
T Consensus 170 ksF~eMKFP~~~L~~lk~K-GI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~ 248 (610)
T KOG0341|consen 170 KSFKEMKFPKPLLRGLKKK-GIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPY 248 (610)
T ss_pred hhhhhccCCHHHHHHHHhc-CCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCe
Confidence 4688888999999999664 999999999999999999999999999999999999999887665433 2445567899
Q ss_pred EEEEeccHHHHHHHHHHHHHHhccc-----CceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCc
Q 013392 96 ALVLVPTRELCLQVYEILHKLLHRF-----HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNL 170 (444)
Q Consensus 96 vlil~P~~~L~~q~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~ 170 (444)
.||+||+++|+.|..+-+..++..+ +......+.+|............+.+|+|+||.+|.+++.+ +...++-+
T Consensus 249 gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~sLd~C 327 (610)
T KOG0341|consen 249 GLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMSLDAC 327 (610)
T ss_pred eEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhccHHHH
Confidence 9999999999999999888876433 34566777788888889899999999999999999999987 67777889
Q ss_pred cEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCC
Q 013392 171 RWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKL 250 (444)
Q Consensus 171 ~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (444)
+++.+||++++.+.+|...+..++..+.. ++|.++||||.|..+..+.+..+-.|+.+.+.....
T Consensus 328 RyL~lDEADRmiDmGFEddir~iF~~FK~---------------QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGA 392 (610)
T KOG0341|consen 328 RYLTLDEADRMIDMGFEDDIRTIFSFFKG---------------QRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGA 392 (610)
T ss_pred HHhhhhhHHHHhhccchhhHHHHHHHHhh---------------hhheeeeeccccHHHHHHHHhhcccceEEecccccc
Confidence 99999999999999999999999999988 999999999999999999999999999988776642
Q ss_pred CCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccc
Q 013392 251 PEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD 330 (444)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~ 330 (444)
...++.+....+....|+-+++.-|+. ...+++|||..+.
T Consensus 393 -----------------------------------AsldViQevEyVkqEaKiVylLeCLQK-----T~PpVLIFaEkK~ 432 (610)
T KOG0341|consen 393 -----------------------------------ASLDVIQEVEYVKQEAKIVYLLECLQK-----TSPPVLIFAEKKA 432 (610)
T ss_pred -----------------------------------cchhHHHHHHHHHhhhhhhhHHHHhcc-----CCCceEEEecccc
Confidence 112333444456667777777776653 3569999999999
Q ss_pred hhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEE
Q 013392 331 AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ 410 (444)
Q Consensus 331 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~ 410 (444)
.+..+.++|--. |..++.+||+..+++|...++.|+.|+.+|||||++++.|+|+|++.+||+
T Consensus 433 DVD~IhEYLLlK-----------------GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN 495 (610)
T KOG0341|consen 433 DVDDIHEYLLLK-----------------GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN 495 (610)
T ss_pred ChHHHHHHHHHc-----------------cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc
Confidence 999999998765 889999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhcccccccCCCcccccceE
Q 013392 411 YDSAGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 411 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
|+.|..++.|+||+||+||.|++|.+-+||
T Consensus 496 yDMP~eIENYVHRIGRTGRsg~~GiATTfI 525 (610)
T KOG0341|consen 496 YDMPEEIENYVHRIGRTGRSGKTGIATTFI 525 (610)
T ss_pred CCChHHHHHHHHHhcccCCCCCcceeeeee
Confidence 999999999999999999999999998887
No 27
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.4e-48 Score=381.46 Aligned_cols=361 Identities=18% Similarity=0.242 Sum_probs=256.6
Q ss_pred CCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccH
Q 013392 24 GLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (444)
Q Consensus 24 ~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~ 103 (444)
.+++++.+.| +.+||.+|+++|.++++.+++|+|+++.+|||||||++|++|+++.+.. .++.++|||+|++
T Consensus 20 ~l~~~l~~~L-~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------~~~~~aL~l~Ptr 91 (742)
T TIGR03817 20 WAHPDVVAAL-EAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------DPRATALYLAPTK 91 (742)
T ss_pred cCCHHHHHHH-HHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-------CCCcEEEEEcChH
Confidence 3889999999 6669999999999999999999999999999999999999999998865 3456899999999
Q ss_pred HHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccC---ccccCCccEEEEechhH
Q 013392 104 ELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS---SFLHTNLRWIIFDEADR 180 (444)
Q Consensus 104 ~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~---~~~~~~~~lvV~DE~h~ 180 (444)
+|+.|+.+.++++. ........+ +|......+..+..+++|+|+||+++...+.... ...++++++||+||+|.
T Consensus 92 aLa~q~~~~l~~l~--~~~i~v~~~-~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 92 ALAADQLRAVRELT--LRGVRPATY-DGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred HHHHHHHHHHHHhc--cCCeEEEEE-eCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 99999999999986 222444444 4444455566677779999999999975432211 12367899999999998
Q ss_pred hhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCccccccc
Q 013392 181 ILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFG 260 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (444)
+.+ .++..+..++..+.... ......+|++++|||+++.... ...+.+.+..+ +..+..+.......+.
T Consensus 169 ~~g-~fg~~~~~il~rL~ri~--------~~~g~~~q~i~~SATi~n~~~~-~~~l~g~~~~~-i~~~~~~~~~~~~~~~ 237 (742)
T TIGR03817 169 YRG-VFGSHVALVLRRLRRLC--------ARYGASPVFVLASATTADPAAA-ASRLIGAPVVA-VTEDGSPRGARTVALW 237 (742)
T ss_pred ccC-ccHHHHHHHHHHHHHHH--------HhcCCCCEEEEEecCCCCHHHH-HHHHcCCCeEE-ECCCCCCcCceEEEEe
Confidence 755 36666666555543210 0011168999999999987654 45555555433 2222111110000000
Q ss_pred CccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhh
Q 013392 261 SLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340 (444)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~ 340 (444)
.-. ..+ .. .. .... ........+...+..+++ .+.++||||++++.++.++..+.
T Consensus 238 ~p~--~~~--------~~--~~-----~~~~--~r~~~~~~~~~~l~~l~~------~~~~~IVF~~sr~~ae~l~~~l~ 292 (742)
T TIGR03817 238 EPP--LTE--------LT--GE-----NGAP--VRRSASAEAADLLADLVA------EGARTLTFVRSRRGAELVAAIAR 292 (742)
T ss_pred cCC--ccc--------cc--cc-----cccc--cccchHHHHHHHHHHHHH------CCCCEEEEcCCHHHHHHHHHHHH
Confidence 000 000 00 00 0000 000001123333333332 25799999999999999999887
Q ss_pred hcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchh
Q 013392 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEY 420 (444)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~ 420 (444)
+...... -..+.++..+||++++++|.+++++|++|++++||||+++++|+|+|++++||+++.|.+..+|
T Consensus 293 ~~l~~~~---------~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y 363 (742)
T TIGR03817 293 RLLGEVD---------PDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASL 363 (742)
T ss_pred HHHHhhc---------cccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHH
Confidence 6421000 0114567889999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccCCCcccccceE
Q 013392 421 VHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 421 ~Q~~GR~~R~g~~g~~~~~i 440 (444)
+||+||+||.|+.|.++.++
T Consensus 364 ~qRiGRaGR~G~~g~ai~v~ 383 (742)
T TIGR03817 364 WQQAGRAGRRGQGALVVLVA 383 (742)
T ss_pred HHhccccCCCCCCcEEEEEe
Confidence 99999999999999988765
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-49 Score=354.54 Aligned_cols=357 Identities=30% Similarity=0.441 Sum_probs=283.4
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcC-CcEEEEcCCCCchhHHhHHHHHHHHhccCCC------
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPR------ 87 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~-~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~------ 87 (444)
-.-+-|..++|+..+.+.| ..+||.+|+++|...++++..| .|++-.|.||||||++|-+|+++.+....+.
T Consensus 178 ~DvsAW~~l~lp~~iL~aL-~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRAL-SNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred cChHHHhcCCCCHHHHHHH-HhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 3446688889999999999 8889999999999999999988 7999999999999999999999965443221
Q ss_pred -CCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCcc-
Q 013392 88 -IDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF- 165 (444)
Q Consensus 88 -~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~- 165 (444)
......+.+||++||++|+.|+.+-+.......+ +....+.||.....+.+-+...++|+|+||.+||.++...+..
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~-i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQ-IRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccC-eEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 1112234599999999999999999999877544 6667788888888888888889999999999999999875543
Q ss_pred -ccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHH-------------
Q 013392 166 -LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH------------- 231 (444)
Q Consensus 166 -~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~------------- 231 (444)
.+++++++|+||+++|...++...+..+++.+.... ....+|.+.||||++-....
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~----------~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~ 405 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQ----------KNRQRQTLVFSATLTLVLQQPLSSSRKKKDKED 405 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhh----------cccccceEEEEEEeehhhcChhHHhhhccchhh
Confidence 567899999999999999999999999999887322 23388999999998431111
Q ss_pred --------HHHh--hcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCC
Q 013392 232 --------LAKI--SLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS 301 (444)
Q Consensus 232 --------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (444)
+... +.+.|.++...... .....+.+..+.|+...
T Consensus 406 ~~~~kiq~Lmk~ig~~~kpkiiD~t~q~-----------------------------------~ta~~l~Es~I~C~~~e 450 (731)
T KOG0347|consen 406 ELNAKIQHLMKKIGFRGKPKIIDLTPQS-----------------------------------ATASTLTESLIECPPLE 450 (731)
T ss_pred hhhHHHHHHHHHhCccCCCeeEecCcch-----------------------------------hHHHHHHHHhhcCCccc
Confidence 1110 12233333333221 11122223333333333
Q ss_pred cHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHH
Q 013392 302 RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGA 381 (444)
Q Consensus 302 k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 381 (444)
|-.+|..+|. .-++++|||||+++.+.+++-+|+.+ ++....+|++|.+.+|-+-+++
T Consensus 451 KD~ylyYfl~-----ryPGrTlVF~NsId~vKRLt~~L~~L-----------------~i~p~~LHA~M~QKqRLknLEk 508 (731)
T KOG0347|consen 451 KDLYLYYFLT-----RYPGRTLVFCNSIDCVKRLTVLLNNL-----------------DIPPLPLHASMIQKQRLKNLEK 508 (731)
T ss_pred cceeEEEEEe-----ecCCceEEEechHHHHHHHHHHHhhc-----------------CCCCchhhHHHHHHHHHHhHHH
Confidence 3333333332 33679999999999999999999988 9999999999999999999999
Q ss_pred hhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceE
Q 013392 382 FKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 382 f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
|++....|||||+++.+|+|||++.+||+|..|.+.+-|+||.||+.|++..|.++.++
T Consensus 509 F~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~ 567 (731)
T KOG0347|consen 509 FKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLC 567 (731)
T ss_pred HhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999988776
No 29
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-48 Score=339.51 Aligned_cols=351 Identities=31% Similarity=0.502 Sum_probs=310.1
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
-++|+.-+..+.+...+.+. .|..|++.|.++++..+++++++-.+.||||||-+++.+++-++..++.- .++.++..
T Consensus 222 vtsfeh~gfDkqLm~airk~-Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL-~~g~gPi~ 299 (731)
T KOG0339|consen 222 VTSFEHFGFDKQLMTAIRKS-EYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPEL-KPGEGPIG 299 (731)
T ss_pred cchhhhcCchHHHHHHHhhh-hcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhh-cCCCCCeE
Confidence 45788888889999999544 89999999999999999999999999999999999999999998775543 33678999
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
+|++||++|+.|+..+++++++.++ +....+++|...+++...+..++.|+||||++|.+++.. +...+.++.++|+|
T Consensus 300 vilvPTrela~Qi~~eaKkf~K~yg-l~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~D 377 (731)
T KOG0339|consen 300 VILVPTRELASQIFSEAKKFGKAYG-LRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM-KATNLSRVSYLVLD 377 (731)
T ss_pred EEEeccHHHHHHHHHHHHHhhhhcc-ceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh-hcccceeeeEEEEe
Confidence 9999999999999999999988877 556777888888888888999999999999999999987 67778899999999
Q ss_pred chhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCccc
Q 013392 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (444)
Q Consensus 177 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (444)
|+++|.+.+|...+..|...++. .+|.++||||+...+..+.+.++.+|+.+....-.
T Consensus 378 EadrmfdmGfe~qVrSI~~hirp---------------drQtllFsaTf~~kIe~lard~L~dpVrvVqg~vg------- 435 (731)
T KOG0339|consen 378 EADRMFDMGFEPQVRSIKQHIRP---------------DRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVG------- 435 (731)
T ss_pred chhhhhccccHHHHHHHHhhcCC---------------cceEEEeeccchHHHHHHHHHHhcCCeeEEEeehh-------
Confidence 99999999999999999999988 99999999999999999999999999886543221
Q ss_pred ccccCccccccccccCCCccccccCccccccccceeeEEEcCC-CCcHHHHHHHHHhhcccccCceEEEEecccchhhhh
Q 013392 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (444)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l 335 (444)
.....+.+....+++ ..|+.-++.-|-++ ...+++|+|+.-+..++.+
T Consensus 436 ----------------------------ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f---~S~gkvlifVTKk~~~e~i 484 (731)
T KOG0339|consen 436 ----------------------------EANEDITQTVSVCPSEEKKLNWLLRHLVEF---SSEGKVLIFVTKKADAEEI 484 (731)
T ss_pred ----------------------------ccccchhheeeeccCcHHHHHHHHHHhhhh---ccCCcEEEEEeccCCHHHH
Confidence 112445555555554 45766666655554 5567999999999999999
Q ss_pred hhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCC
Q 013392 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (444)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~ 415 (444)
...|+-. ++++..+||++.+.+|.+++.+|+.+...||++|+...+|+|+|++..|++|+...
T Consensus 485 ~a~Lklk-----------------~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ar 547 (731)
T KOG0339|consen 485 AANLKLK-----------------GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFAR 547 (731)
T ss_pred HHHhccc-----------------cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccc
Confidence 9999876 99999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhcccccccCCCcccccceEE
Q 013392 416 EATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 416 s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+++.|.||+||.||.|.+|++|++|.
T Consensus 548 dIdththrigrtgRag~kGvayTlvT 573 (731)
T KOG0339|consen 548 DIDTHTHRIGRTGRAGEKGVAYTLVT 573 (731)
T ss_pred hhHHHHHHhhhcccccccceeeEEec
Confidence 99999999999999999999999874
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-48 Score=330.78 Aligned_cols=350 Identities=25% Similarity=0.416 Sum_probs=295.3
Q ss_pred hhhhhccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcC--CcEEEEcCCCCchhHHhHHHHHHHHhccCC
Q 013392 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSP 86 (444)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~il~~~tG~GKT~~~~~~~~~~~~~~~~ 86 (444)
.+++++++-.+|++++|.+++.+.+ ..|+|..|+.+|..|++.++.. ++.|.++..|+|||.++.+.++.++...
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgl-y~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-- 157 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGL-YAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-- 157 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHH-HHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--
Confidence 4788999999999999999999999 7799999999999999999965 7899999999999999999999887542
Q ss_pred CCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccc
Q 013392 87 RIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFL 166 (444)
Q Consensus 87 ~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~ 166 (444)
...+.++.|+|+++|+.|..+.+.+.++... +.......+.... +...-..+|+|+||..+.+++...+.+.
T Consensus 158 ----~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~-ita~yair~sk~~---rG~~i~eqIviGTPGtv~Dlm~klk~id 229 (477)
T KOG0332|consen 158 ----VVVPQCICLAPTRELAPQTGEVVEEMGKFTE-LTASYAIRGSKAK---RGNKLTEQIVIGTPGTVLDLMLKLKCID 229 (477)
T ss_pred ----ccCCCceeeCchHHHHHHHHHHHHHhcCcee-eeEEEEecCcccc---cCCcchhheeeCCCccHHHHHHHHHhhC
Confidence 3456689999999999999999999987663 3332222222000 0000113699999999999998878888
Q ss_pred cCCccEEEEechhHhhhc-chhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcc
Q 013392 167 HTNLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245 (444)
Q Consensus 167 ~~~~~lvV~DE~h~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~ 245 (444)
...+..+|+|||+.+.+. ++.+....+...++. ..|+++||||.......+......++..+.+
T Consensus 230 ~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~---------------~~QllLFSATf~e~V~~Fa~kivpn~n~i~L 294 (477)
T KOG0332|consen 230 LEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR---------------NQQLLLFSATFVEKVAAFALKIVPNANVIIL 294 (477)
T ss_pred hhhceEEEecchhhhhhcccccccchhhhhhcCC---------------cceEEeeechhHHHHHHHHHHhcCCCceeee
Confidence 889999999999998776 688888889988886 8999999999999999999999888877766
Q ss_pred cCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCC-CcHHHHHHHHHhhcccccCceEEE
Q 013392 246 DEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG-SRLAVLLSILKHLFDTEVSQKLVV 324 (444)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~~~~~iv 324 (444)
.... .....+.++++.|+.. .|...+.+ ++....-+..||
T Consensus 295 k~ee-----------------------------------l~L~~IkQlyv~C~~~~~K~~~l~~----lyg~~tigqsiI 335 (477)
T KOG0332|consen 295 KREE-----------------------------------LALDNIKQLYVLCACRDDKYQALVN----LYGLLTIGQSII 335 (477)
T ss_pred ehhh-----------------------------------ccccchhhheeeccchhhHHHHHHH----HHhhhhhhheEE
Confidence 5553 2345677888888654 56655555 333345578899
Q ss_pred EecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCC
Q 013392 325 FFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK 404 (444)
Q Consensus 325 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~ 404 (444)
||.++..+..++..+... |+.+..+||++..++|..+++.|+.|..+|||+|+++.+|+|++.
T Consensus 336 Fc~tk~ta~~l~~~m~~~-----------------Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~q 398 (477)
T KOG0332|consen 336 FCHTKATAMWLYEEMRAE-----------------GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQ 398 (477)
T ss_pred EEeehhhHHHHHHHHHhc-----------------CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccce
Confidence 999999999999999887 889999999999999999999999999999999999999999999
Q ss_pred CcEEEEccCCC------CcchhhhcccccccCCCcccccceE
Q 013392 405 VKCIIQYDSAG------EATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 405 ~~~vi~~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
++.||+|+.|. +..+|+||+||+||+|++|.++.++
T Consensus 399 Vs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v 440 (477)
T KOG0332|consen 399 VSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLV 440 (477)
T ss_pred EEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEee
Confidence 99999999986 5679999999999999999999876
No 31
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.4e-46 Score=356.55 Aligned_cols=316 Identities=18% Similarity=0.226 Sum_probs=233.7
Q ss_pred HHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHH
Q 013392 33 LRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (444)
Q Consensus 33 l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 112 (444)
|++.|||..|+|+|.++++.+++++++++.+|||+|||++|++|++.. +..+||++|+++|+.|+.+.
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQ 70 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999998752 33589999999999999998
Q ss_pred HHHHhcccCceeeEEEeCCcchhHHH---HH-hcCCCcEEEeCchHHHHHHhccCcc-ccCCccEEEEechhHhhhcc--
Q 013392 113 LHKLLHRFHWIVPGYVMGGENRSKEK---AR-LRKGISILVATPGRLLDHLKHTSSF-LHTNLRWIIFDEADRILELG-- 185 (444)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~iii~T~~~l~~~l~~~~~~-~~~~~~lvV~DE~h~~~~~~-- 185 (444)
+.... .....+.++....+.. .. .....+|+++||+.+.........+ ....+++||+||+|++.+++
T Consensus 71 l~~~g-----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 71 LKASG-----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 88642 2334444443333211 12 2345899999999875422110111 34689999999999988764
Q ss_pred hhHHHHH---HHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHh--hcCCCeEEcccCcCCCCCccccccc
Q 013392 186 FGKEIEE---ILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKI--SLETPVLIGLDEKKLPEDKSHVRFG 260 (444)
Q Consensus 186 ~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (444)
+...... +...++ ..+++++|||+++........ .+..+..+......
T Consensus 146 fr~~~~~l~~l~~~~~----------------~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r----------- 198 (470)
T TIGR00614 146 FRPDYKALGSLKQKFP----------------NVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDR----------- 198 (470)
T ss_pred cHHHHHHHHHHHHHcC----------------CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCC-----------
Confidence 3333333 333332 668999999998865543322 23333332211100
Q ss_pred CccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhh
Q 013392 261 SLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340 (444)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~ 340 (444)
.++. +.+..........+...+.. ...+..+||||++++.++.+++.|.
T Consensus 199 ---------------------------~nl~-~~v~~~~~~~~~~l~~~l~~---~~~~~~~IIF~~s~~~~e~la~~L~ 247 (470)
T TIGR00614 199 ---------------------------PNLY-YEVRRKTPKILEDLLRFIRK---EFKGKSGIIYCPSRKKSEQVTASLQ 247 (470)
T ss_pred ---------------------------CCcE-EEEEeCCccHHHHHHHHHHH---hcCCCceEEEECcHHHHHHHHHHHH
Confidence 0111 11111111234444444443 2445677999999999999999998
Q ss_pred hcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchh
Q 013392 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEY 420 (444)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~ 420 (444)
.. ++.+..+|++++.++|.++++.|++|+.+|||||+++++|+|+|++++||++++|.|...|
T Consensus 248 ~~-----------------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y 310 (470)
T TIGR00614 248 NL-----------------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESY 310 (470)
T ss_pred hc-----------------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHH
Confidence 87 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccCCCcccccceE
Q 013392 421 VHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 421 ~Q~~GR~~R~g~~g~~~~~i 440 (444)
+||+||+||.|++|.|+.+.
T Consensus 311 ~Qr~GRaGR~G~~~~~~~~~ 330 (470)
T TIGR00614 311 YQESGRAGRDGLPSECHLFY 330 (470)
T ss_pred HhhhcCcCCCCCCceEEEEe
Confidence 99999999999999999875
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-47 Score=324.92 Aligned_cols=341 Identities=30% Similarity=0.481 Sum_probs=300.9
Q ss_pred CccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEE
Q 013392 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 98 (444)
Q Consensus 19 ~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vli 98 (444)
+|++++|.+.+++.+ -.+||+.|+.+|+.|+..+..|.|++..+.+|+|||.++..++++.+... .....+++
T Consensus 27 sfddm~L~e~LLrgi-y~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~------~ke~qali 99 (397)
T KOG0327|consen 27 SFDDMNLKESLLRGI-YAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS------VKETQALI 99 (397)
T ss_pred hhhhcCCCHHHHhHH-HhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc------hHHHHHHH
Confidence 899999999999999 88999999999999999999999999999999999999999999987431 33556999
Q ss_pred EeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchh-HHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEec
Q 013392 99 LVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS-KEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (444)
Q Consensus 99 l~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE 177 (444)
++|+++|+.|.......++...+... ..+.++.... +........+.|+++||..+...+.. ..+....+.+.|+||
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v-~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~-~~l~~~~iKmfvlDE 177 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSV-HACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR-GSLSTDGIKMFVLDE 177 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceee-eeecCcccchhhhhhhhccCceeecCCchhHHHhhcc-ccccccceeEEeecc
Confidence 99999999999988888776655333 4444555555 44444445589999999999999887 466677899999999
Q ss_pred hhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccc
Q 013392 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (444)
Q Consensus 178 ~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (444)
++.++..++.+.+..++..++. ..|.+++|||.+.....+.+.+..+|..+.+....+
T Consensus 178 aDEmLs~gfkdqI~~if~~lp~---------------~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~l------- 235 (397)
T KOG0327|consen 178 ADEMLSRGFKDQIYDIFQELPS---------------DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDEL------- 235 (397)
T ss_pred hHhhhccchHHHHHHHHHHcCc---------------chhheeecccCcHHHHHHHHHhccCceEEEecchhh-------
Confidence 9999999999999999999998 889999999999999999999999999987776641
Q ss_pred cccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhh
Q 013392 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (444)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~ 337 (444)
..+.+.++++.+..+.|+..+.++.++ -...++||+++..+..+..
T Consensus 236 ----------------------------tl~gikq~~i~v~k~~k~~~l~dl~~~------~~q~~if~nt~r~v~~l~~ 281 (397)
T KOG0327|consen 236 ----------------------------TLEGIKQFYINVEKEEKLDTLCDLYRR------VTQAVIFCNTRRKVDNLTD 281 (397)
T ss_pred ----------------------------hhhheeeeeeeccccccccHHHHHHHh------hhcceEEecchhhHHHHHH
Confidence 135677888888888898888888763 3578999999999999999
Q ss_pred hhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCc
Q 013392 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417 (444)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~ 417 (444)
.|..+ +.++..+|+++.+.+|..++..|+.|..+|||.|+.+++|+|+..+..|++|+.|.+.
T Consensus 282 ~L~~~-----------------~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~ 344 (397)
T KOG0327|consen 282 KLRAH-----------------GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARK 344 (397)
T ss_pred HHhhC-----------------CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccch
Confidence 99777 8899999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccccccCCCcccccceEE
Q 013392 418 TEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 418 ~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
.+|+||+||+||+|.+|.+++++.
T Consensus 345 ~~yihR~gr~gr~grkg~~in~v~ 368 (397)
T KOG0327|consen 345 ENYIHRIGRAGRFGRKGVAINFVT 368 (397)
T ss_pred hhhhhhcccccccCCCceeeeeeh
Confidence 999999999999999999999864
No 33
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-47 Score=364.65 Aligned_cols=351 Identities=34% Similarity=0.524 Sum_probs=313.9
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEE
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vl 97 (444)
.+|...|++..|...+ +++||..|+++|.+|||+++.|+++|.++-||+|||+.|++|++.+...+++.. .+.|+.+|
T Consensus 365 ~sW~q~gl~~~il~tl-kkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~-~gdGPi~l 442 (997)
T KOG0334|consen 365 TSWTQCGLSSKILETL-KKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLE-EGDGPIAL 442 (997)
T ss_pred chHhhCCchHHHHHHH-HHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChh-hCCCceEE
Confidence 5799999999999999 888999999999999999999999999999999999999999998877665543 35699999
Q ss_pred EEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhcc--CccccCCccEEEE
Q 013392 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT--SSFLHTNLRWIIF 175 (444)
Q Consensus 98 il~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~--~~~~~~~~~lvV~ 175 (444)
|++||++|+.|..+++++|...++ +....++++.........+..++.|+||||.++++.+-.+ +...+.++-++|+
T Consensus 443 i~aPtrela~QI~r~~~kf~k~l~-ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~ 521 (997)
T KOG0334|consen 443 ILAPTRELAMQIHREVRKFLKLLG-IRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVL 521 (997)
T ss_pred EEcCCHHHHHHHHHHHHHHHhhcC-ceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeee
Confidence 999999999999999999988754 7778888899999999999999999999999999977542 2335556669999
Q ss_pred echhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcc
Q 013392 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (444)
Q Consensus 176 DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
||++++.+.+|......+++.++. .+|.+++|||++..+..+....+..|+.+.+....
T Consensus 522 deaDrmfdmgfePq~~~Ii~nlrp---------------drQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s------ 580 (997)
T KOG0334|consen 522 DEADRMFDMGFEPQITRILQNLRP---------------DRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS------ 580 (997)
T ss_pred chhhhhheeccCcccchHHhhcch---------------hhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce------
Confidence 999999988998888889999876 99999999999999999999988888886655432
Q ss_pred cccccCccccccccccCCCccccccCccccccccceeeEEEcC-CCCcHHHHHHHHHhhcccccCceEEEEecccchhhh
Q 013392 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP-CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (444)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~ 334 (444)
.....+.+.+..++ ...|...|..+|.++. ...++||||.+.+.|..
T Consensus 581 -----------------------------vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~---e~~~tiiFv~~qe~~d~ 628 (997)
T KOG0334|consen 581 -----------------------------VVCKEVTQVVRVCAIENEKFLKLLELLGERY---EDGKTIIFVDKQEKADA 628 (997)
T ss_pred -----------------------------eEeccceEEEEEecCchHHHHHHHHHHHHHh---hcCCEEEEEcCchHHHH
Confidence 33456777777777 8899999999999874 37899999999999999
Q ss_pred hhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCC
Q 013392 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (444)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~ 414 (444)
+.+.|.+. ++.+..+||+.++.+|..++++|++|.+.+||+|+.+.+|+|++.+..||+|+.|
T Consensus 629 l~~~L~~a-----------------g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~p 691 (997)
T KOG0334|consen 629 LLRDLQKA-----------------GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFP 691 (997)
T ss_pred HHHHHHhc-----------------CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccc
Confidence 99999876 8888889999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcccccccCCCcccccceEE
Q 013392 415 GEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 415 ~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
.-+.+|+||.||+||.|++|.+++||.
T Consensus 692 nh~edyvhR~gRTgragrkg~AvtFi~ 718 (997)
T KOG0334|consen 692 NHYEDYVHRVGRTGRAGRKGAAVTFIT 718 (997)
T ss_pred hhHHHHHHHhcccccCCccceeEEEeC
Confidence 999999999999999999999999873
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.8e-45 Score=361.82 Aligned_cols=331 Identities=19% Similarity=0.202 Sum_probs=243.7
Q ss_pred cCCccc--cCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCc
Q 013392 17 SCSFSS--LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (444)
Q Consensus 17 ~~~~~~--~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (444)
...|.+ .+-...+...++..||+..+|+.|.+++++++.|+|+++.+|||+|||++|.+|++.. +.
T Consensus 434 ~~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~G 501 (1195)
T PLN03137 434 DKKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PG 501 (1195)
T ss_pred CccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CC
Confidence 334554 3344667888888899999999999999999999999999999999999999999862 23
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHh---c---CCCcEEEeCchHHHH---HHhccCcc
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARL---R---KGISILVATPGRLLD---HLKHTSSF 165 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~iii~T~~~l~~---~l~~~~~~ 165 (444)
.+|||+|+++|+.++...+... .+....+.++....+....+ . .+++|+|+||+++.. ++......
T Consensus 502 iTLVISPLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L 576 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL 576 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh
Confidence 5999999999999777766653 24445555555544433222 1 468999999999852 12211111
Q ss_pred -ccCCccEEEEechhHhhhcc--hhHHHHH---HHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhc--
Q 013392 166 -LHTNLRWIIFDEADRILELG--FGKEIEE---ILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL-- 237 (444)
Q Consensus 166 -~~~~~~lvV~DE~h~~~~~~--~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~-- 237 (444)
....+.+||+||||++.+++ |...... +...++ ..+++++|||++..........+
T Consensus 577 ~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp----------------~vPilALTATAT~~V~eDI~~~L~l 640 (1195)
T PLN03137 577 NSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFP----------------NIPVLALTATATASVKEDVVQALGL 640 (1195)
T ss_pred hhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCC----------------CCCeEEEEecCCHHHHHHHHHHcCC
Confidence 12458899999999999876 4443333 222222 66789999999887665433322
Q ss_pred CCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCC-cHHHHHHHHHhhccc
Q 013392 238 ETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS-RLAVLLSILKHLFDT 316 (444)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~ 316 (444)
..+..+..... ..++ .+...+... ....+..++...
T Consensus 641 ~~~~vfr~Sf~--------------------------------------RpNL--~y~Vv~k~kk~le~L~~~I~~~--- 677 (1195)
T PLN03137 641 VNCVVFRQSFN--------------------------------------RPNL--WYSVVPKTKKCLEDIDKFIKEN--- 677 (1195)
T ss_pred CCcEEeecccC--------------------------------------ccce--EEEEeccchhHHHHHHHHHHhc---
Confidence 22222111100 0111 122222221 123344444432
Q ss_pred ccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEeccc
Q 013392 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA 396 (444)
Q Consensus 317 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~ 396 (444)
..+.++||||.+++.++.++..|... |+.+..+||+|+.++|..+++.|..|+++|||||+++
T Consensus 678 ~~~esgIIYC~SRke~E~LAe~L~~~-----------------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAF 740 (1195)
T PLN03137 678 HFDECGIIYCLSRMDCEKVAERLQEF-----------------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAF 740 (1195)
T ss_pred ccCCCceeEeCchhHHHHHHHHHHHC-----------------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechh
Confidence 33568899999999999999999887 8999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceE
Q 013392 397 ARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 397 ~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
++|||+|++++||+|+.|.|++.|+||+||+||.|++|.|+++.
T Consensus 741 GMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 741 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred hcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999875
No 35
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-47 Score=325.69 Aligned_cols=350 Identities=35% Similarity=0.548 Sum_probs=316.4
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCc
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (444)
-++..|.++||+....++++++ ||+.|+|+|++.++.++.+++++-.+-||+|||.++++++++++.... ..+.
T Consensus 18 kg~g~fqsmgL~~~v~raI~kk-g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~ 91 (529)
T KOG0337|consen 18 KGSGGFQSMGLDYKVLRAIHKK-GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGL 91 (529)
T ss_pred CCCCCccccCCCHHHHHHHHHh-hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----cccc
Confidence 3489999999999999999666 999999999999999999999999999999999999999999987633 2467
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEE
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV 174 (444)
+++++.|+++|+.|..+..+.++...+ .....+++++...++...+..++||+++||.++...... -...++.+.+||
T Consensus 92 RalilsptreLa~qtlkvvkdlgrgt~-lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve-m~l~l~sveyVV 169 (529)
T KOG0337|consen 92 RALILSPTRELALQTLKVVKDLGRGTK-LRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE-MTLTLSSVEYVV 169 (529)
T ss_pred ceeeccCcHHHHHHHHHHHHHhccccc-hhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh-eeccccceeeee
Confidence 899999999999999999998876544 556667788888899999999999999999999886554 336678999999
Q ss_pred EechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCc
Q 013392 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (444)
Q Consensus 175 ~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (444)
|||+++++..+|.+.+.+++.+++. .+|.++||||+|.....+.+.++.+|..++++.+.
T Consensus 170 fdEadrlfemgfqeql~e~l~rl~~---------------~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet----- 229 (529)
T KOG0337|consen 170 FDEADRLFEMGFQEQLHEILSRLPE---------------SRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET----- 229 (529)
T ss_pred ehhhhHHHhhhhHHHHHHHHHhCCC---------------cceEEEEeccCchhhHHHHHccCCCCceEEeehhh-----
Confidence 9999999999999999999999988 78999999999999999999999999999877664
Q ss_pred ccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhh
Q 013392 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (444)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~ 334 (444)
.+...+...+..+....|..+|+.++... .....++||+.+..+++.
T Consensus 230 ------------------------------kise~lk~~f~~~~~a~K~aaLl~il~~~---~~~~~t~vf~~tk~hve~ 276 (529)
T KOG0337|consen 230 ------------------------------KISELLKVRFFRVRKAEKEAALLSILGGR---IKDKQTIVFVATKHHVEY 276 (529)
T ss_pred ------------------------------hcchhhhhheeeeccHHHHHHHHHHHhcc---ccccceeEEecccchHHH
Confidence 34566777888899999999999999876 335689999999999999
Q ss_pred hhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCC
Q 013392 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (444)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~ 414 (444)
+...++.. |+.+..+.+.+++..|..-...|..++..+||.|+.+.+|+|+|-.+.||+|+.|
T Consensus 277 ~~~ll~~~-----------------g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p 339 (529)
T KOG0337|consen 277 VRGLLRDF-----------------GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFP 339 (529)
T ss_pred HHHHHHhc-----------------CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCC
Confidence 99999988 8888889999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcccccccCCCcccccceEEe
Q 013392 415 GEATEYVHRYLKHLPVGNFYFNIPLIVC 442 (444)
Q Consensus 415 ~s~~~~~Q~~GR~~R~g~~g~~~~~i~~ 442 (444)
.+...|.||+||+.|.|+.|.+|+++..
T Consensus 340 ~~~klFvhRVgr~aragrtg~aYs~V~~ 367 (529)
T KOG0337|consen 340 PDDKLFVHRVGRVARAGRTGRAYSLVAS 367 (529)
T ss_pred CCCceEEEEecchhhccccceEEEEEec
Confidence 9999999999999999999999999863
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-46 Score=326.90 Aligned_cols=369 Identities=28% Similarity=0.420 Sum_probs=292.6
Q ss_pred cCCccccCCCHHHHHH----------HHHHcCCCCCCHHHHhHHHhHh---------cCCcEEEEcCCCCchhHHhHHHH
Q 013392 17 SCSFSSLGLHSTLCDQ----------LRERLGFEAPTKVQAQAIPVIL---------SGRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~----------l~~~~~~~~~~~~Q~~~~~~~~---------~~~~~il~~~tG~GKT~~~~~~~ 77 (444)
.-.|+.+++++.+... + .++++.++-|+|...+++++ ..+|+.+.+|||||||++|.+|+
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l-~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPI 204 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLL-VKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPI 204 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHH-HHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHH
Confidence 3456666666654444 7 66699999999999999986 25799999999999999999999
Q ss_pred HHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCC-----CcEEEeCc
Q 013392 78 INHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKG-----ISILVATP 152 (444)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~iii~T~ 152 (444)
.+.+..++- +.-+++||+|++.|+.|+++.|.++....+.. .+...+..+..++...+.+. .||+|+||
T Consensus 205 VQ~L~~R~v-----~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~-V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTP 278 (620)
T KOG0350|consen 205 VQLLSSRPV-----KRLRAVVIVPTRELALQVYDTFKRLNSGTGLA-VCSLSGQNSLEDEARQLASDPPECRIDILVATP 278 (620)
T ss_pred HHHHccCCc-----cceEEEEEeeHHHHHHHHHHHHHHhccCCceE-EEecccccchHHHHHHHhcCCCccccceEEcCc
Confidence 999877433 34679999999999999999999998877744 45555555566666666543 48999999
Q ss_pred hHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCC----------------CCCCC---cccc
Q 013392 153 GRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGS----------------IGEGN---EVSN 213 (444)
Q Consensus 153 ~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~---~~~~ 213 (444)
.+|.+.+...+.+.++.++++|+||++++++..|..-+..+...+....-.. ..... ....
T Consensus 279 GRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~ 358 (620)
T KOG0350|consen 279 GRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLY 358 (620)
T ss_pred hHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcC
Confidence 9999999988999999999999999999999876655555544443321000 00001 1123
Q ss_pred cceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceee
Q 013392 214 VKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQR 293 (444)
Q Consensus 214 ~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (444)
.+.+.+.+|||+......+..+-+..|....+.... ...+.+|..+.+.
T Consensus 359 ~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~-------------------------------~~ryslp~~l~~~ 407 (620)
T KOG0350|consen 359 PPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPL-------------------------------IGRYSLPSSLSHR 407 (620)
T ss_pred chhHhhhcchhhhcChHHHhhhhcCCCceEEeeccc-------------------------------ceeeecChhhhhc
Confidence 344677889998887777877777777665444321 1224667888899
Q ss_pred EEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhh-hcccCCCCCchHHHHHhhhccceEEEecCCCH
Q 013392 294 YVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS-EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQ 372 (444)
Q Consensus 294 ~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (444)
.+.+...-+...+..+|+. ....++|+|+++...+.++...|+ .+... +.++-.++|.++.
T Consensus 408 ~vv~~~~~kpl~~~~lI~~----~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~--------------~~~~s~~t~~l~~ 469 (620)
T KOG0350|consen 408 LVVTEPKFKPLAVYALITS----NKLNRTLCFVNSVSSANRLAHVLKVEFCSD--------------NFKVSEFTGQLNG 469 (620)
T ss_pred eeecccccchHhHHHHHHH----hhcceEEEEecchHHHHHHHHHHHHHhccc--------------cchhhhhhhhhhH
Confidence 9998888888888888876 567899999999999999999887 33222 5566678999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 373 EDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 373 ~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
..|...++.|..|++++|||+|++.+|+|+.+++.||+|++|.+...|+||+||++|+|+.|.+++++.
T Consensus 470 k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~ 538 (620)
T KOG0350|consen 470 KRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLD 538 (620)
T ss_pred HHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999874
No 37
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4.5e-46 Score=337.36 Aligned_cols=351 Identities=26% Similarity=0.390 Sum_probs=302.0
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCc
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (444)
..-..|+++-|...+...|+ +.+|..|+++|..||+.++.+-|.|+++..|+|||++|..++.+.+.. +....
T Consensus 22 ~~~~~fe~l~l~r~vl~glr-rn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------~~~~~ 94 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLR-RNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------RSSHI 94 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHH-hhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------ccCcc
Confidence 34467899999999999994 449999999999999999999999999999999999998877776643 24567
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEE
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV 174 (444)
+.+|++||++++-|+.+.+.+.+..+....+.++.||+....+...+. +++|+|+||.++..+++. ..+..+.++++|
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el-~~~n~s~vrlfV 172 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVEL-GAMNMSHVRLFV 172 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHh-cCCCccceeEEE
Confidence 799999999999999999999998888888888988887776655443 467999999999998886 888889999999
Q ss_pred EechhHhhh-cchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCC
Q 013392 175 FDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (444)
Q Consensus 175 ~DE~h~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (444)
+||++.+++ ..|...+..+...++. .+|++++|||.+..+......++.+|.++++..+.
T Consensus 173 LDEADkL~~t~sfq~~In~ii~slP~---------------~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d---- 233 (980)
T KOG4284|consen 173 LDEADKLMDTESFQDDINIIINSLPQ---------------IRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADD---- 233 (980)
T ss_pred eccHHhhhchhhHHHHHHHHHHhcch---------------hheeeEEeccCchhHHHHHHHHhcccceeecccCC----
Confidence 999999998 5789999999999998 99999999999999999999999999999887763
Q ss_pred cccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCc----HHHHHHHHHhhcccccCceEEEEeccc
Q 013392 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSR----LAVLLSILKHLFDTEVSQKLVVFFSTC 329 (444)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~~l~~~~~~~~~~~~ivf~~~~ 329 (444)
...-.+.+++...+.... ...-++.|.+.+..-+-..+||||+..
T Consensus 234 -------------------------------~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~ 282 (980)
T KOG4284|consen 234 -------------------------------VQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQI 282 (980)
T ss_pred -------------------------------ceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhh
Confidence 122345566555443321 111222333344445667899999999
Q ss_pred chhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEE
Q 013392 330 DAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCII 409 (444)
Q Consensus 330 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi 409 (444)
..|+-++++|... |+.+-+++|.|++.+|...++.++.-..+|||+|+...+|+|-++++.||
T Consensus 283 sra~~~a~~L~ss-----------------G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVV 345 (980)
T KOG4284|consen 283 SRAEPIATHLKSS-----------------GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVV 345 (980)
T ss_pred hhhhHHHHHhhcc-----------------CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEE
Confidence 9999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 410 QYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 410 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+.|+|.+..+|.|||||+||+|..|.+++++-
T Consensus 346 NiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~ 377 (980)
T KOG4284|consen 346 NIDAPADEETYFHRIGRAGRFGAHGAAVTLLE 377 (980)
T ss_pred ecCCCcchHHHHHHhhhcccccccceeEEEec
Confidence 99999999999999999999999999998873
No 38
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.6e-45 Score=363.96 Aligned_cols=364 Identities=21% Similarity=0.234 Sum_probs=253.4
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHh-HhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
|.|++++|++++.+.+ ...|+.+|+|+|.++++. +.+++++++++|||+|||+++.++++..+.. +.++
T Consensus 1 ~~~~~l~lp~~~~~~l-~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---------~~ka 70 (737)
T PRK02362 1 MKIAELPLPEGVIEFY-EAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---------GGKA 70 (737)
T ss_pred CChhhcCCCHHHHHHH-HhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------CCcE
Confidence 5799999999999999 556999999999999998 6789999999999999999999999988743 5579
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
+|++|+++|+.|..+.++++.. .+ .....++++..... ....+++|+|+||+++..++.+ ....++++++||+|
T Consensus 71 l~i~P~raLa~q~~~~~~~~~~-~g-~~v~~~tGd~~~~~---~~l~~~~IiV~Tpek~~~llr~-~~~~l~~v~lvViD 144 (737)
T PRK02362 71 LYIVPLRALASEKFEEFERFEE-LG-VRVGISTGDYDSRD---EWLGDNDIIVATSEKVDSLLRN-GAPWLDDITCVVVD 144 (737)
T ss_pred EEEeChHHHHHHHHHHHHHhhc-CC-CEEEEEeCCcCccc---cccCCCCEEEECHHHHHHHHhc-ChhhhhhcCEEEEE
Confidence 9999999999999999997643 23 44455555443322 2234579999999999888775 33456789999999
Q ss_pred chhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcc-
Q 013392 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS- 255 (444)
Q Consensus 177 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 255 (444)
|+|.+.+..++..++.++..+..... ..|++++|||+++... +..+..... +...+.|-...
T Consensus 145 E~H~l~d~~rg~~le~il~rl~~~~~------------~~qii~lSATl~n~~~-la~wl~~~~----~~~~~rpv~l~~ 207 (737)
T PRK02362 145 EVHLIDSANRGPTLEVTLAKLRRLNP------------DLQVVALSATIGNADE-LADWLDAEL----VDSEWRPIDLRE 207 (737)
T ss_pred CccccCCCcchHHHHHHHHHHHhcCC------------CCcEEEEcccCCCHHH-HHHHhCCCc----ccCCCCCCCCee
Confidence 99998887788888877776654322 6799999999987433 333221111 01111000000
Q ss_pred cccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhh
Q 013392 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (444)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l 335 (444)
.+.+.. .. .... ... ......+.. ....+.... ..++++||||+++..++.+
T Consensus 208 ~v~~~~-------~~--------------~~~~--~~~--~~~~~~~~~-~~~~~~~~~--~~~~~~LVF~~sr~~~~~~ 259 (737)
T PRK02362 208 GVFYGG-------AI--------------HFDD--SQR--EVEVPSKDD-TLNLVLDTL--EEGGQCLVFVSSRRNAEGF 259 (737)
T ss_pred eEecCC-------ee--------------cccc--ccc--cCCCccchH-HHHHHHHHH--HcCCCeEEEEeCHHHHHHH
Confidence 000000 00 0000 000 011111111 122222221 3467999999999999999
Q ss_pred hhhhhhcccCCCCCc-------------------hHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEeccc
Q 013392 336 YSLLSEFQWSPHSQP-------------------DMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA 396 (444)
Q Consensus 336 ~~~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~ 396 (444)
+..+........... ............++.+|++++..+|..+++.|++|.++|||||+++
T Consensus 260 a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tl 339 (737)
T PRK02362 260 AKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTL 339 (737)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhh
Confidence 988876432110000 0001111224578999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEE----cc-----CCCCcchhhhcccccccCCCcccccceEEe
Q 013392 397 ARGLDFPKVKCIIQ----YD-----SAGEATEYVHRYLKHLPVGNFYFNIPLIVC 442 (444)
Q Consensus 397 ~~G~di~~~~~vi~----~~-----~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~~ 442 (444)
++|+|+|..++||. |+ .|.+..+|.||+||+||.|....+.++++|
T Consensus 340 a~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~ 394 (737)
T PRK02362 340 AAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLA 394 (737)
T ss_pred hhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEe
Confidence 99999999999986 54 577899999999999999987544555443
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.3e-44 Score=353.29 Aligned_cols=323 Identities=20% Similarity=0.259 Sum_probs=239.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 23 LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 23 ~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
++..+...+.|++.|||..++++|.++++.+++++++++.+|||+|||++|++|++.. ...+||++|+
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl 74 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPL 74 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecH
Confidence 3455666778888899999999999999999999999999999999999999998753 2348999999
Q ss_pred HHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHH---HH-hcCCCcEEEeCchHHHHHHhccCccccCCccEEEEech
Q 013392 103 RELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---AR-LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEA 178 (444)
Q Consensus 103 ~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~ 178 (444)
++|+.|+.+.++... .....+.++....... .. .....+++++||+++...... ..+...++++||+||+
T Consensus 75 ~sL~~dqv~~l~~~g-----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEa 148 (607)
T PRK11057 75 ISLMKDQVDQLLANG-----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEA 148 (607)
T ss_pred HHHHHHHHHHHHHcC-----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCc
Confidence 999999999888752 2333344443333221 11 234578999999998642111 1122347899999999
Q ss_pred hHhhhcc--hhHH---HHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHH-H-hhcCCCeEEcccCcCCC
Q 013392 179 DRILELG--FGKE---IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA-K-ISLETPVLIGLDEKKLP 251 (444)
Q Consensus 179 h~~~~~~--~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 251 (444)
|++.+++ +... +..+...++ ..+++++|||++....... . +.+.+|........
T Consensus 149 H~i~~~G~~fr~~y~~L~~l~~~~p----------------~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~--- 209 (607)
T PRK11057 149 HCISQWGHDFRPEYAALGQLRQRFP----------------TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD--- 209 (607)
T ss_pred cccccccCcccHHHHHHHHHHHhCC----------------CCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCC---
Confidence 9988764 3333 333333332 6688999999987654422 2 22333333211100
Q ss_pred CCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccch
Q 013392 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (444)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~ 331 (444)
..++ .+.......+...+...+.. ..+.++||||+++++
T Consensus 210 -----------------------------------r~nl--~~~v~~~~~~~~~l~~~l~~----~~~~~~IIFc~tr~~ 248 (607)
T PRK11057 210 -----------------------------------RPNI--RYTLVEKFKPLDQLMRYVQE----QRGKSGIIYCNSRAK 248 (607)
T ss_pred -----------------------------------CCcc--eeeeeeccchHHHHHHHHHh----cCCCCEEEEECcHHH
Confidence 0001 11112222334444444443 456799999999999
Q ss_pred hhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEc
Q 013392 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (444)
Q Consensus 332 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~ 411 (444)
++.++..|.+. ++.+..+|++++.++|.++++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 249 ~e~la~~L~~~-----------------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~ 311 (607)
T PRK11057 249 VEDTAARLQSR-----------------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHF 311 (607)
T ss_pred HHHHHHHHHhC-----------------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEe
Confidence 99999999887 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhcccccccCCCcccccceE
Q 013392 412 DSAGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 412 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
+.|.|...|+||+||+||.|.+|.++.|.
T Consensus 312 d~P~s~~~y~Qr~GRaGR~G~~~~~ill~ 340 (607)
T PRK11057 312 DIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (607)
T ss_pred CCCCCHHHHHHHhhhccCCCCCceEEEEe
Confidence 99999999999999999999999988775
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5.4e-44 Score=360.68 Aligned_cols=358 Identities=20% Similarity=0.218 Sum_probs=248.2
Q ss_pred CCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHH
Q 013392 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (444)
Q Consensus 25 l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~ 104 (444)
+++.+.+.+ +. +|..|+++|.++++.+++|+++++++|||+|||++++++++..+..........++.++|+|+|+++
T Consensus 18 l~~~v~~~~-~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWF-KE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHH-HH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 667777777 44 6778999999999999999999999999999999999999988865332222234678999999999
Q ss_pred HHHHHHHHHHHHhc-----------ccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCc-cccCCccE
Q 013392 105 LCLQVYEILHKLLH-----------RFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS-FLHTNLRW 172 (444)
Q Consensus 105 L~~q~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~-~~~~~~~l 172 (444)
|+.|+.+.+.+.+. ..+.......+++.........+...++|+|+||+++..++..... ..+.++++
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~ 175 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCE
Confidence 99999887654221 1223455666666666655556667789999999999877754221 14678999
Q ss_pred EEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCC-------CeEEcc
Q 013392 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-------PVLIGL 245 (444)
Q Consensus 173 vV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~-------~~~~~~ 245 (444)
||+||+|.+.+...+..+...+.++.... ....|.+++|||+++.. .+....... +..+.
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~-----------~~~~q~IglSATl~~~~-~va~~L~~~~~~~~~r~~~iv- 242 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELA-----------GGEFVRIGLSATIEPLE-EVAKFLVGYEDDGEPRDCEIV- 242 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhc-----------CCCCeEEEEecccCCHH-HHHHHhcCccccCCCCceEEE-
Confidence 99999999887666666555555444311 11679999999997632 223222111 11110
Q ss_pred cCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEE
Q 013392 246 DEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVF 325 (444)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf 325 (444)
.... ... ..-... .+ . ..............+...+.... ..+.++|||
T Consensus 243 ~~~~-~k~------------~~i~v~--------------~p--~-~~l~~~~~~~~~~~l~~~L~~~i--~~~~~~LVF 290 (876)
T PRK13767 243 DARF-VKP------------FDIKVI--------------SP--V-DDLIHTPAEEISEALYETLHELI--KEHRTTLIF 290 (876)
T ss_pred ccCC-Ccc------------ceEEEe--------------cc--C-ccccccccchhHHHHHHHHHHHH--hcCCCEEEE
Confidence 0000 000 000000 00 0 00000111112233334444432 235689999
Q ss_pred ecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCC
Q 013392 326 FSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKV 405 (444)
Q Consensus 326 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~ 405 (444)
|+++..++.++..|.+.... .+.+..+..+||++++++|..+++.|++|..++||||+++++|+|+|++
T Consensus 291 ~nTr~~ae~la~~L~~~~~~-----------~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~V 359 (876)
T PRK13767 291 TNTRSGAERVLYNLRKRFPE-----------EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYI 359 (876)
T ss_pred eCCHHHHHHHHHHHHHhchh-----------hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCC
Confidence 99999999999998764211 0125679999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCCcchhhhcccccccC-CCcccccceE
Q 013392 406 KCIIQYDSAGEATEYVHRYLKHLPV-GNFYFNIPLI 440 (444)
Q Consensus 406 ~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~i 440 (444)
++||+++.|.+...|+||+||+||. |..+.++.+.
T Consensus 360 d~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 360 DLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred cEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 9999999999999999999999986 4444444443
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.3e-43 Score=347.80 Aligned_cols=314 Identities=20% Similarity=0.269 Sum_probs=236.3
Q ss_pred HHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHH
Q 013392 31 DQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (444)
Q Consensus 31 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 110 (444)
+.|++.|||..+|++|.++++.++.|+|+++++|||+|||++|+++++.. +..++|++|+++|+.|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~ 70 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQV 70 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHH
Confidence 46778899999999999999999999999999999999999999988752 234899999999999999
Q ss_pred HHHHHHhcccCceeeEEEeCCcchhHHHH----HhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcc-
Q 013392 111 EILHKLLHRFHWIVPGYVMGGENRSKEKA----RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG- 185 (444)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~- 185 (444)
+.++..+ .....+.++....+... ...+..+|+++||+++...... ......++++||+||+|++..++
T Consensus 71 ~~l~~~g-----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~ 144 (591)
T TIGR01389 71 DQLRAAG-----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGH 144 (591)
T ss_pred HHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccC
Confidence 9988752 23344444444333221 2345689999999998642221 12234589999999999987764
Q ss_pred -hhHHHH---HHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhc--CCCeEEcccCcCCCCCcccccc
Q 013392 186 -FGKEIE---EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL--ETPVLIGLDEKKLPEDKSHVRF 259 (444)
Q Consensus 186 -~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 259 (444)
+..... .+...++ ..+++++|||++..........+ .++..+.....
T Consensus 145 ~frp~y~~l~~l~~~~~----------------~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~----------- 197 (591)
T TIGR01389 145 DFRPEYQRLGSLAERFP----------------QVPRIALTATADAETRQDIRELLRLADANEFITSFD----------- 197 (591)
T ss_pred ccHHHHHHHHHHHHhCC----------------CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCC-----------
Confidence 333333 3333333 34589999999887655333322 22222110000
Q ss_pred cCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhh
Q 013392 260 GSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL 339 (444)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l 339 (444)
..++ .+.......+...+.+.+... .+.++||||++++.++.+++.|
T Consensus 198 ---------------------------r~nl--~~~v~~~~~~~~~l~~~l~~~----~~~~~IIf~~sr~~~e~la~~L 244 (591)
T TIGR01389 198 ---------------------------RPNL--RFSVVKKNNKQKFLLDYLKKH----RGQSGIIYASSRKKVEELAERL 244 (591)
T ss_pred ---------------------------CCCc--EEEEEeCCCHHHHHHHHHHhc----CCCCEEEEECcHHHHHHHHHHH
Confidence 0111 122223344555666666543 3678999999999999999999
Q ss_pred hhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcch
Q 013392 340 SEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATE 419 (444)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~ 419 (444)
... ++++..+|++++.++|..+++.|.+|+.+|||||+++++|+|+|++++||++++|.|...
T Consensus 245 ~~~-----------------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~ 307 (591)
T TIGR01389 245 ESQ-----------------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLES 307 (591)
T ss_pred HhC-----------------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHH
Confidence 876 888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccCCCcccccce
Q 013392 420 YVHRYLKHLPVGNFYFNIPL 439 (444)
Q Consensus 420 ~~Q~~GR~~R~g~~g~~~~~ 439 (444)
|.|++||+||.|+.|.|+.+
T Consensus 308 y~Q~~GRaGR~G~~~~~il~ 327 (591)
T TIGR01389 308 YYQEAGRAGRDGLPAEAILL 327 (591)
T ss_pred HhhhhccccCCCCCceEEEe
Confidence 99999999999999998755
No 42
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=7.9e-43 Score=348.59 Aligned_cols=354 Identities=20% Similarity=0.211 Sum_probs=246.5
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHh-HhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
+.|+++++++++.+.+ +..|+..|+++|.++++. +.+++++++++|||+|||+++.++++..+.. .+.++
T Consensus 1 ~~~~~l~l~~~~~~~l-~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~ 71 (720)
T PRK00254 1 MKVDELRVDERIKRVL-KERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKA 71 (720)
T ss_pred CcHHHcCCCHHHHHHH-HhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeE
Confidence 4788999999999999 556999999999999986 7799999999999999999999999888754 24579
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
|+++|+++|+.|+.+.+..+.. .+ .....++++..... ....+++|+|+||+++..++.. ....++++++||+|
T Consensus 72 l~l~P~~aLa~q~~~~~~~~~~-~g-~~v~~~~Gd~~~~~---~~~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvViD 145 (720)
T PRK00254 72 VYLVPLKALAEEKYREFKDWEK-LG-LRVAMTTGDYDSTD---EWLGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVVAD 145 (720)
T ss_pred EEEeChHHHHHHHHHHHHHHhh-cC-CEEEEEeCCCCCch---hhhccCCEEEEcHHHHHHHHhC-CchhhhcCCEEEEc
Confidence 9999999999999999987632 33 34455555443322 2235679999999999887765 44456899999999
Q ss_pred chhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCccc
Q 013392 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (444)
Q Consensus 177 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (444)
|+|.+.+..++..+..++..+.. ..|++++|||+++. ..+..+.... .. ...+.+-..
T Consensus 146 E~H~l~~~~rg~~le~il~~l~~---------------~~qiI~lSATl~n~-~~la~wl~~~-~~---~~~~rpv~l-- 203 (720)
T PRK00254 146 EIHLIGSYDRGATLEMILTHMLG---------------RAQILGLSATVGNA-EELAEWLNAE-LV---VSDWRPVKL-- 203 (720)
T ss_pred CcCccCCccchHHHHHHHHhcCc---------------CCcEEEEEccCCCH-HHHHHHhCCc-cc---cCCCCCCcc--
Confidence 99998887788888888887764 78999999999874 3444432211 10 000000000
Q ss_pred ccccCccccccccccCCCccccccCccccccccceeeEEEcCCCC--c-HHHHHHHHHhhcccccCceEEEEecccchhh
Q 013392 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS--R-LAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (444)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--k-~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~ 333 (444)
... ...+.+....... + .......+.+.. ..+.++||||+++..++
T Consensus 204 -~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~vLVF~~sr~~~~ 252 (720)
T PRK00254 204 -RKG----------------------------VFYQGFLFWEDGKIERFPNSWESLVYDAV--KKGKGALVFVNTRRSAE 252 (720)
T ss_pred -eee----------------------------EecCCeeeccCcchhcchHHHHHHHHHHH--HhCCCEEEEEcChHHHH
Confidence 000 0000000000000 0 011122222222 23679999999999999
Q ss_pred hhhhhhhhcccCCCCCc----------------hHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccc
Q 013392 334 FHYSLLSEFQWSPHSQP----------------DMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAA 397 (444)
Q Consensus 334 ~l~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~ 397 (444)
.++..+.......-... ............++.+|+++++++|..+++.|++|.++|||||++++
T Consensus 253 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa 332 (720)
T PRK00254 253 KEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLS 332 (720)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHh
Confidence 88877654311000000 00111112345799999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEE-------ccCCC-CcchhhhcccccccCCC--cccccce
Q 013392 398 RGLDFPKVKCIIQ-------YDSAG-EATEYVHRYLKHLPVGN--FYFNIPL 439 (444)
Q Consensus 398 ~G~di~~~~~vi~-------~~~~~-s~~~~~Q~~GR~~R~g~--~g~~~~~ 439 (444)
+|+|+|..++||. ++.+. +..+|.||+||+||.|. .|.++.+
T Consensus 333 ~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 333 AGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred hhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEE
Confidence 9999999999984 33333 46689999999999774 4555544
No 43
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.9e-43 Score=312.79 Aligned_cols=367 Identities=20% Similarity=0.191 Sum_probs=251.4
Q ss_pred CCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 39 FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 39 ~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
..++|.||.......+.+ +.+++.|||.|||+++++.+..++.. .++ ++|+++||+-|+.|+++.+.++..
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-------FGG-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-------cCC-eEEEecCCchHHHHHHHHHHHHhC
Confidence 346999999988887655 89999999999999999999888876 334 899999999999999999999876
Q ss_pred ccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhc
Q 013392 119 RFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198 (444)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~ 198 (444)
-.. .....++ |....+.+...+...+|+|+||+.+.+-+.. +.+++.++.++||||||+......+..+......-.
T Consensus 84 ip~-~~i~~lt-Gev~p~~R~~~w~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 84 IPE-DEIAALT-GEVRPEEREELWAKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred CCh-hheeeec-CCCChHHHHHHHhhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchHHHHHHHHHHhc
Confidence 322 3334444 4555566777888889999999999998876 788889999999999999876644444444333333
Q ss_pred CCCCCCCCCCCcccccceeEEEEEeecchhhHHHHH---hhcCCCeEEcccCcCCCCCc------cccc-----------
Q 013392 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK---ISLETPVLIGLDEKKLPEDK------SHVR----------- 258 (444)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------~~~~----------- 258 (444)
. ++.++++||||....+.+.. ...-....+....+.--..+ ..+.
T Consensus 161 k---------------~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir 225 (542)
T COG1111 161 K---------------NPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIR 225 (542)
T ss_pred c---------------CceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHH
Confidence 3 77899999999775554333 21111111111111000000 0000
Q ss_pred ----------------ccCc--cc--ccccc---c----cC-CCccc-c-------------------------------
Q 013392 259 ----------------FGSL--ES--DVKEE---V----EH-PSTTM-R------------------------------- 278 (444)
Q Consensus 259 ----------------~~~~--~~--~~~~~---~----~~-~~~~~-~------------------------------- 278 (444)
.+.. .. ...+. . .. ..... .
T Consensus 226 ~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Y 305 (542)
T COG1111 226 DLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQY 305 (542)
T ss_pred HHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 0000 00 00000 0 00 00000 0
Q ss_pred ---------c--------cCcccccccc---ceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhh
Q 013392 279 ---------S--------TTEDFKLPAQ---LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSL 338 (444)
Q Consensus 279 ---------~--------~~~~~~~~~~---~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~ 338 (444)
. ...+...... +.......-..+|+..+..++++.++...+.++|||++.++.++.+.+.
T Consensus 306 l~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~ 385 (542)
T COG1111 306 LEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNF 385 (542)
T ss_pred HHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHH
Confidence 0 0000000000 1011111234679999999999999888889999999999999999999
Q ss_pred hhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcc
Q 013392 339 LSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEAT 418 (444)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~ 418 (444)
|.+..-... ..|.|-.......+|++.++.+++++|+.|+.+|||||++.++|+|+|.++.||+|++..|..
T Consensus 386 L~~~~~~~~--------~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeI 457 (542)
T COG1111 386 LKKIGIKAR--------VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEI 457 (542)
T ss_pred HHhcCCcce--------eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHH
Confidence 988731100 001111112234679999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccCCCcccccceEE
Q 013392 419 EYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 419 ~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
.++||.||+||. ++|.++.++.
T Consensus 458 R~IQR~GRTGR~-r~Grv~vLvt 479 (542)
T COG1111 458 RSIQRKGRTGRK-RKGRVVVLVT 479 (542)
T ss_pred HHHHhhCccccC-CCCeEEEEEe
Confidence 999999999995 8898887764
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.1e-42 Score=345.22 Aligned_cols=320 Identities=19% Similarity=0.209 Sum_probs=240.7
Q ss_pred CCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcC------CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEE
Q 013392 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 98 (444)
Q Consensus 25 l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vli 98 (444)
.+....+.+.+.++|. |++.|.++++.+.++ ++.++++|||+|||.+++.+++..+.. +.+++|
T Consensus 436 ~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvlv 505 (926)
T TIGR00580 436 PDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVAV 505 (926)
T ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEEE
Confidence 4466677777889997 999999999999864 689999999999999999999887754 467999
Q ss_pred EeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHH---HHHhc-CCCcEEEeCchHHHHHHhccCccccCCccEEE
Q 013392 99 LVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (444)
Q Consensus 99 l~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV 174 (444)
++||++|+.|+++.+++++...+ .....+.++....+. ...+. ++++|+|+||..+ . +.+.+.+++++|
T Consensus 506 LvPT~~LA~Q~~~~f~~~~~~~~-i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~llV 578 (926)
T TIGR00580 506 LVPTTLLAQQHFETFKERFANFP-VTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q--KDVKFKDLGLLI 578 (926)
T ss_pred EeCcHHHHHHHHHHHHHHhccCC-cEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h--CCCCcccCCEEE
Confidence 99999999999999999887655 334445544433322 23333 3589999999533 2 345567999999
Q ss_pred EechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCc
Q 013392 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (444)
Q Consensus 175 ~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (444)
+||+|++. ......+..++. ..+++++|||+.+...........++..+...+.. .
T Consensus 579 IDEahrfg-----v~~~~~L~~~~~---------------~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~----R 634 (926)
T TIGR00580 579 IDEEQRFG-----VKQKEKLKELRT---------------SVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED----R 634 (926)
T ss_pred eecccccc-----hhHHHHHHhcCC---------------CCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC----c
Confidence 99999853 333344444443 77999999998877665555555555544322110 0
Q ss_pred ccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHH-HHHhhcccccCceEEEEecccchhh
Q 013392 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLS-ILKHLFDTEVSQKLVVFFSTCDAVD 333 (444)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~-~l~~~~~~~~~~~~ivf~~~~~~~~ 333 (444)
..+..++.... . ..+.. +.++. ..+++++|||++++.++
T Consensus 635 ---------------------------------~~V~t~v~~~~--~--~~i~~~i~~el---~~g~qv~if~n~i~~~e 674 (926)
T TIGR00580 635 ---------------------------------LPVRTFVMEYD--P--ELVREAIRREL---LRGGQVFYVHNRIESIE 674 (926)
T ss_pred ---------------------------------cceEEEEEecC--H--HHHHHHHHHHH---HcCCeEEEEECCcHHHH
Confidence 01111221111 1 11222 22332 34679999999999999
Q ss_pred hhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC
Q 013392 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (444)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~ 413 (444)
.+++.|+.. +++.++..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 675 ~l~~~L~~~---------------~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 675 KLATQLREL---------------VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred HHHHHHHHh---------------CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecC
Confidence 999998764 34778999999999999999999999999999999999999999999999999988
Q ss_pred CC-CcchhhhcccccccCCCcccccceE
Q 013392 414 AG-EATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 414 ~~-s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
+. ...+|.||+||+||.|+.|.|+.++
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~g~aill~ 767 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKKAYAYLLY 767 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCCeEEEEEE
Confidence 65 5678999999999999999999876
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=4.2e-42 Score=331.36 Aligned_cols=344 Identities=24% Similarity=0.276 Sum_probs=262.6
Q ss_pred CCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHH
Q 013392 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (444)
Q Consensus 25 l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~ 104 (444)
|++.+++.+..+ |..|++.|.+|++.+.+|+++++.+|||+|||.+|.+|++..+.... ..+...+-.+|+|+|.++
T Consensus 8 l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 8 LDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKA 84 (814)
T ss_pred cCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHH
Confidence 789999999666 77899999999999999999999999999999999999999998753 222234678999999999
Q ss_pred HHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccC-ccccCCccEEEEechhHhhh
Q 013392 105 LCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS-SFLHTNLRWIIFDEADRILE 183 (444)
Q Consensus 105 L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~-~~~~~~~~lvV~DE~h~~~~ 183 (444)
|.+++.+++..++...+... .+.++++......+...+.++|+|+||++|.-++...+ .-.+.++++||+||+|.+..
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v-~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~ 163 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEV-AVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE 163 (814)
T ss_pred HHHHHHHHHHHHHHHcCCcc-ceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhc
Confidence 99999999999999877544 66666666666666667779999999999998877522 22667999999999999988
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCC--C-eEEcccCcCCCCCccccccc
Q 013392 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET--P-VLIGLDEKKLPEDKSHVRFG 260 (444)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~ 260 (444)
...+..+.--+.++....+ ..|.+++|||..+.. ...++..+. + ..+........+......-.
T Consensus 164 sKRG~~Lsl~LeRL~~l~~------------~~qRIGLSATV~~~~-~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~ 230 (814)
T COG1201 164 SKRGVQLALSLERLRELAG------------DFQRIGLSATVGPPE-EVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVE 230 (814)
T ss_pred cccchhhhhhHHHHHhhCc------------ccEEEeehhccCCHH-HHHHHhcCCCCceEEEEcccCCcceEEEEecCC
Confidence 7777777777777665432 789999999998543 333333332 2 22222222111111100000
Q ss_pred CccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhh
Q 013392 261 SLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340 (444)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~ 340 (444)
.... .+.-...+...+.+..+. ...++||+|++..++.+...|+
T Consensus 231 ----------------------------~~~~------~~~~~~~~~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~ 274 (814)
T COG1201 231 ----------------------------DLIY------DEELWAALYERIAELVKK--HRTTLIFTNTRSGAERLAFRLK 274 (814)
T ss_pred ----------------------------cccc------ccchhHHHHHHHHHHHhh--cCcEEEEEeChHHHHHHHHHHH
Confidence 0000 022233344444444322 3489999999999999999998
Q ss_pred hcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchh
Q 013392 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEY 420 (444)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~ 420 (444)
... +..+..+||+++.+.|....++|++|+++.+|||+.++-|+|+.+++.||+++.|+++..+
T Consensus 275 ~~~----------------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~ 338 (814)
T COG1201 275 KLG----------------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRF 338 (814)
T ss_pred Hhc----------------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHH
Confidence 873 3789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccc-CCCccccc
Q 013392 421 VHRYLKHLP-VGNFYFNI 437 (444)
Q Consensus 421 ~Q~~GR~~R-~g~~g~~~ 437 (444)
+||+||+|+ .|....++
T Consensus 339 lQRiGRsgHr~~~~Skg~ 356 (814)
T COG1201 339 LQRIGRAGHRLGEVSKGI 356 (814)
T ss_pred hHhccccccccCCcccEE
Confidence 999999987 34334333
No 46
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=6.4e-42 Score=340.82 Aligned_cols=358 Identities=20% Similarity=0.225 Sum_probs=247.1
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEE
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vl 97 (444)
+.|+++++++.+.+.+ ...+|. |+++|.++++.+.+++++++++|||+|||+++.++++..+.. +.+++
T Consensus 1 ~~~~~~~l~~~~~~~~-~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v 69 (674)
T PRK01172 1 MKISDLGYDDEFLNLF-TGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSI 69 (674)
T ss_pred CcHhhcCCCHHHHHHH-hhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEE
Confidence 5688999999999999 555897 999999999999999999999999999999999998887754 45699
Q ss_pred EEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEec
Q 013392 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (444)
Q Consensus 98 il~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE 177 (444)
+++|+++|+.|..++++++.. .+ .......++..... .....++|+|+||+++..++.+ ....+.++++||+||
T Consensus 70 ~i~P~raLa~q~~~~~~~l~~-~g-~~v~~~~G~~~~~~---~~~~~~dIiv~Tpek~~~l~~~-~~~~l~~v~lvViDE 143 (674)
T PRK01172 70 YIVPLRSLAMEKYEELSRLRS-LG-MRVKISIGDYDDPP---DFIKRYDVVILTSEKADSLIHH-DPYIINDVGLIVADE 143 (674)
T ss_pred EEechHHHHHHHHHHHHHHhh-cC-CeEEEEeCCCCCCh---hhhccCCEEEECHHHHHHHHhC-ChhHHhhcCEEEEec
Confidence 999999999999999987642 33 23333444332221 1224579999999999888776 334467899999999
Q ss_pred hhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccc
Q 013392 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (444)
Q Consensus 178 ~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (444)
+|.+.+..++..++.++..+...+. ..|++++|||+++. ..+..+..... +.......+ .
T Consensus 144 aH~l~d~~rg~~le~ll~~~~~~~~------------~~riI~lSATl~n~-~~la~wl~~~~--~~~~~r~vp-----l 203 (674)
T PRK01172 144 IHIIGDEDRGPTLETVLSSARYVNP------------DARILALSATVSNA-NELAQWLNASL--IKSNFRPVP-----L 203 (674)
T ss_pred chhccCCCccHHHHHHHHHHHhcCc------------CCcEEEEeCccCCH-HHHHHHhCCCc--cCCCCCCCC-----e
Confidence 9998877777777777666543221 67999999999764 33443321111 000000000 0
Q ss_pred cccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhh
Q 013392 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (444)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~ 337 (444)
..+... ....+.. ........+..++.+.. ..++++||||++++.++.++.
T Consensus 204 ~~~i~~--------------------------~~~~~~~-~~~~~~~~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~ 254 (674)
T PRK01172 204 KLGILY--------------------------RKRLILD-GYERSQVDINSLIKETV--NDGGQVLVFVSSRKNAEDYAE 254 (674)
T ss_pred EEEEEe--------------------------cCeeeec-ccccccccHHHHHHHHH--hCCCcEEEEeccHHHHHHHHH
Confidence 000000 0000000 00000111233343321 346799999999999999998
Q ss_pred hhhhcccCCCCC--------chHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEE
Q 013392 338 LLSEFQWSPHSQ--------PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCII 409 (444)
Q Consensus 338 ~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi 409 (444)
.|.......... .............++.+|++++.++|..+++.|++|..+|||||+++++|+|+|...+||
T Consensus 255 ~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII 334 (674)
T PRK01172 255 MLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV 334 (674)
T ss_pred HHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE
Confidence 887653211110 001111122346789999999999999999999999999999999999999999865544
Q ss_pred EccC---------CCCcchhhhcccccccCCCcccccceEEe
Q 013392 410 QYDS---------AGEATEYVHRYLKHLPVGNFYFNIPLIVC 442 (444)
Q Consensus 410 ~~~~---------~~s~~~~~Q~~GR~~R~g~~g~~~~~i~~ 442 (444)
.+. |.+..+|.||+||+||.|..+.+.+++.|
T Consensus 335 -~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~ 375 (674)
T PRK01172 335 -RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYA 375 (674)
T ss_pred -cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEe
Confidence 332 45677899999999999987776666655
No 47
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-42 Score=314.11 Aligned_cols=346 Identities=27% Similarity=0.369 Sum_probs=279.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 23 LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 23 ~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
+..+..+++.+. ..+|..|++.|.+|++.++.+++++.|+|||+|||+++.+|++.++..... ..+..+-+++|+.|+
T Consensus 141 ~~~~~~ll~nl~-~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-~~~~~gl~a~Il~pt 218 (593)
T KOG0344|consen 141 YSMNKRLLENLQ-ELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-EKHKVGLRALILSPT 218 (593)
T ss_pred hhhcHHHHHhHh-hCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc-ccCccceEEEEecch
Confidence 456788999994 449999999999999999999999999999999999999999999876432 223457789999999
Q ss_pred HHHHHHHHHHHHHHhcc--cCceeeEEEeCCcchhHH-HHHhcCCCcEEEeCchHHHHHHhcc-CccccCCccEEEEech
Q 013392 103 RELCLQVYEILHKLLHR--FHWIVPGYVMGGENRSKE-KARLRKGISILVATPGRLLDHLKHT-SSFLHTNLRWIIFDEA 178 (444)
Q Consensus 103 ~~L~~q~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~iii~T~~~l~~~l~~~-~~~~~~~~~lvV~DE~ 178 (444)
++|+.|.++++.++... .+... ..+......... .......++++|+||..+...+... ....+..+.++|+||+
T Consensus 219 reLa~Qi~re~~k~~~~~~t~~~a-~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEa 297 (593)
T KOG0344|consen 219 RELAAQIYREMRKYSIDEGTSLRA-AQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEA 297 (593)
T ss_pred HHHHHHHHHHHHhcCCCCCCchhh-hhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechH
Confidence 99999999999998732 21111 111111111111 1111223689999999999888752 2357789999999999
Q ss_pred hHhhhc-chhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccc
Q 013392 179 DRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (444)
Q Consensus 179 h~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (444)
+.+.+. .|...+..++..+... ...+-+||||.+...+.++.....++..+.+.....
T Consensus 298 D~lfe~~~f~~Qla~I~sac~s~--------------~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~s------- 356 (593)
T KOG0344|consen 298 DLLFEPEFFVEQLADIYSACQSP--------------DIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNS------- 356 (593)
T ss_pred HhhhChhhHHHHHHHHHHHhcCc--------------chhhhhhhccccHHHHHHHHHhhccceeEEEecchh-------
Confidence 999998 8888999999888763 556678999999999999999988888776655431
Q ss_pred cccCccccccccccCCCccccccCccccccccceeeEEEc-CCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhh
Q 013392 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKV-PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (444)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~ 336 (444)
....+.+..+.+ ....|+..+.+++... -..+++||+.+.+.|..++
T Consensus 357 ----------------------------a~~~V~QelvF~gse~~K~lA~rq~v~~g----~~PP~lIfVQs~eRak~L~ 404 (593)
T KOG0344|consen 357 ----------------------------ANETVDQELVFCGSEKGKLLALRQLVASG----FKPPVLIFVQSKERAKQLF 404 (593)
T ss_pred ----------------------------HhhhhhhhheeeecchhHHHHHHHHHhcc----CCCCeEEEEecHHHHHHHH
Confidence 123344444444 5667888888888764 4679999999999999999
Q ss_pred hhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCC
Q 013392 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (444)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s 416 (444)
..|.. +.++.+.++||+.++.+|.+.+++|+.|++.+||||+.+++|+|+.+++.||+||.|.+
T Consensus 405 ~~L~~----------------~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s 468 (593)
T KOG0344|consen 405 EELEI----------------YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQS 468 (593)
T ss_pred HHhhh----------------ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCch
Confidence 98863 34899999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccccccCCCcccccceE
Q 013392 417 ATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 417 ~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
...|+||+||+||+|+.|.+|+|-
T Consensus 469 ~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 469 DLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred hHHHHHHhhccCCCCCCcceEEEe
Confidence 999999999999999999999885
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.5e-40 Score=328.05 Aligned_cols=320 Identities=20% Similarity=0.236 Sum_probs=231.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHhHHHhHhcC------CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 27 STLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
..+.+.+.+.++|. |+++|.++++.+..+ .+.++++|||||||.+|+++++..+.. +.+++|++
T Consensus 248 ~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---------g~q~lila 317 (681)
T PRK10917 248 GELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---------GYQAALMA 317 (681)
T ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEe
Confidence 56667777889997 999999999999865 478999999999999999999887743 66799999
Q ss_pred ccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHH---HHHhc-CCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 101 PTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 101 P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
||++|+.|+++.+++++...+ .....++++...... ...+. ++++|+|+||..+.. ...+.++++||+|
T Consensus 318 PT~~LA~Q~~~~l~~l~~~~~-i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVID 390 (681)
T PRK10917 318 PTEILAEQHYENLKKLLEPLG-IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIID 390 (681)
T ss_pred ccHHHHHHHHHHHHHHHhhcC-cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEe
Confidence 999999999999999987655 455666666654332 22333 359999999987643 2345689999999
Q ss_pred chhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCccc
Q 013392 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (444)
Q Consensus 177 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (444)
|+|++... ....+..... .++++++|||+.+....+......+...+..... ..
T Consensus 391 E~Hrfg~~-----qr~~l~~~~~---------------~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~----~r-- 444 (681)
T PRK10917 391 EQHRFGVE-----QRLALREKGE---------------NPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP----GR-- 444 (681)
T ss_pred chhhhhHH-----HHHHHHhcCC---------------CCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC----CC--
Confidence 99986332 2222332222 5789999999876554433322112222110000 00
Q ss_pred ccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhh---
Q 013392 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD--- 333 (444)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~--- 333 (444)
..+.... . ...+...+...+.... ..+.+++|||+.+++.+
T Consensus 445 -------------------------------~~i~~~~--~-~~~~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~ 488 (681)
T PRK10917 445 -------------------------------KPITTVV--I-PDSRRDEVYERIREEI--AKGRQAYVVCPLIEESEKLD 488 (681)
T ss_pred -------------------------------CCcEEEE--e-CcccHHHHHHHHHHHH--HcCCcEEEEEcccccccchh
Confidence 0011111 1 1222333444444432 45679999999765443
Q ss_pred -----hhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEE
Q 013392 334 -----FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCI 408 (444)
Q Consensus 334 -----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~v 408 (444)
.+++.|... +++.++..+||+++..+|.+++++|++|+.+|||||+++++|+|+|++++|
T Consensus 489 ~~~~~~~~~~L~~~---------------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~V 553 (681)
T PRK10917 489 LQSAEETYEELQEA---------------FPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVM 553 (681)
T ss_pred HHHHHHHHHHHHHH---------------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEE
Confidence 344444432 335789999999999999999999999999999999999999999999999
Q ss_pred EEccCCC-CcchhhhcccccccCCCcccccceE
Q 013392 409 IQYDSAG-EATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 409 i~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
|+++.|. ....+.|++||+||.|..|.|+.+.
T Consensus 554 Ii~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~ 586 (681)
T PRK10917 554 VIENAERFGLAQLHQLRGRVGRGAAQSYCVLLY 586 (681)
T ss_pred EEeCCCCCCHHHHHHHhhcccCCCCceEEEEEE
Confidence 9999987 4678899999999999999998775
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.9e-40 Score=338.23 Aligned_cols=319 Identities=19% Similarity=0.198 Sum_probs=237.9
Q ss_pred HHHHHHHHHHcCCCCCCHHHHhHHHhHhcC------CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 27 STLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
....+.+.+.++|. |++.|.++++.++.+ +|.+++++||+|||.+++.++...+. .+.+++|++
T Consensus 587 ~~~~~~~~~~~~~~-~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---------~g~qvlvLv 656 (1147)
T PRK10689 587 REQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---------NHKQVAVLV 656 (1147)
T ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---------cCCeEEEEe
Confidence 44555555899996 999999999999876 79999999999999999887776553 356799999
Q ss_pred ccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHH---hc-CCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 101 PTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKAR---LR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 101 P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
||++|+.|+++.+++.+..++ .....+.++....+.... +. ++++|+|+||+.+. ..+.+.+++++|+|
T Consensus 657 PT~eLA~Q~~~~f~~~~~~~~-v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~------~~v~~~~L~lLVID 729 (1147)
T PRK10689 657 PTTLLAQQHYDNFRDRFANWP-VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ------SDVKWKDLGLLIVD 729 (1147)
T ss_pred CcHHHHHHHHHHHHHhhccCC-ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh------CCCCHhhCCEEEEe
Confidence 999999999999998776654 334445555444443332 22 46899999997442 23445789999999
Q ss_pred chhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCccc
Q 013392 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (444)
Q Consensus 177 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (444)
|+|++.. .....++.++. ..|++++|||+.+....+...++.++..+.......
T Consensus 730 EahrfG~-----~~~e~lk~l~~---------------~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r------ 783 (1147)
T PRK10689 730 EEHRFGV-----RHKERIKAMRA---------------DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR------ 783 (1147)
T ss_pred chhhcch-----hHHHHHHhcCC---------------CCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC------
Confidence 9999622 22333444443 789999999998887777777777776654322110
Q ss_pred ccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhh
Q 013392 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (444)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~ 336 (444)
..+.+...... .......++.+. ..+++++|||++++.++.++
T Consensus 784 -------------------------------~~v~~~~~~~~---~~~~k~~il~el---~r~gqv~vf~n~i~~ie~la 826 (1147)
T PRK10689 784 -------------------------------LAVKTFVREYD---SLVVREAILREI---LRGGQVYYLYNDVENIQKAA 826 (1147)
T ss_pred -------------------------------CCceEEEEecC---cHHHHHHHHHHH---hcCCeEEEEECCHHHHHHHH
Confidence 01111211111 111122333343 33578999999999999999
Q ss_pred hhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCC-C
Q 013392 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA-G 415 (444)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~-~ 415 (444)
+.|.+. +++.++..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+.+.. .
T Consensus 827 ~~L~~~---------------~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~f 891 (1147)
T PRK10689 827 ERLAEL---------------VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 (1147)
T ss_pred HHHHHh---------------CCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCC
Confidence 998775 346789999999999999999999999999999999999999999999999966543 3
Q ss_pred CcchhhhcccccccCCCcccccceE
Q 013392 416 EATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 416 s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
+...|.||+||+||.|+.|.|+.+.
T Consensus 892 glaq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 892 GLAQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred CHHHHHHHhhccCCCCCceEEEEEe
Confidence 5678999999999999999998764
No 50
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.1e-39 Score=316.38 Aligned_cols=330 Identities=17% Similarity=0.163 Sum_probs=235.7
Q ss_pred HHHHHHHHcCCCCCCHHHHhHHHhHhcCC-cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHH
Q 013392 29 LCDQLRERLGFEAPTKVQAQAIPVILSGR-HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (444)
Q Consensus 29 i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~-~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~ 107 (444)
..+.+++..||+ |+|||.++++.++.|+ ++++.+|||+|||.++.+.++.. .. ......++++++|+++|+.
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTVVD 76 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHHHH
Confidence 345565667998 9999999999999998 57888999999998654333321 11 0122345566789999999
Q ss_pred HHHHHHHHHhcccC----------------------ceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhc----
Q 013392 108 QVYEILHKLLHRFH----------------------WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKH---- 161 (444)
Q Consensus 108 q~~~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~---- 161 (444)
|.++.+.++...+. ......++||.....++..+..+++|+|+|++.+.+-...
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg 156 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYG 156 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccc
Confidence 99999999887542 2567788999999899999999999999997655431110
Q ss_pred ----cCcc---ccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHH
Q 013392 162 ----TSSF---LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK 234 (444)
Q Consensus 162 ----~~~~---~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~ 234 (444)
...+ .++.+.++|+|||| +..+|...+..++..+.... ...++|+++||||++........
T Consensus 157 ~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~----------~~rprQtLLFSAT~p~ei~~l~~ 224 (844)
T TIGR02621 157 CGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPP----------DFLPLRVVELTATSRTDGPDRTT 224 (844)
T ss_pred cccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCc----------ccccceEEEEecCCCccHHHHHH
Confidence 0000 25678999999999 56779999999988652110 00147999999999887766666
Q ss_pred hhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhc
Q 013392 235 ISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLF 314 (444)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 314 (444)
.+..++..+.+..... ....+.+ ++..+...+...+...+....
T Consensus 225 ~~~~~p~~i~V~~~~l-----------------------------------~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll 268 (844)
T TIGR02621 225 LLSAEDYKHPVLKKRL-----------------------------------AAKKIVK-LVPPSDEKFLSTMVKELNLLM 268 (844)
T ss_pred HHccCCceeecccccc-----------------------------------cccceEE-EEecChHHHHHHHHHHHHHHH
Confidence 5554444332221110 0011222 222333334444443333322
Q ss_pred ccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHH-----HHHHHhhc----C
Q 013392 315 DTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR-----TTFGAFKT----E 385 (444)
Q Consensus 315 ~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----g 385 (444)
...+.++||||++++.++.+++.|.+. ++ ..+||.+++.+|. .+++.|++ |
T Consensus 269 -~e~g~~vLVF~NTv~~Aq~L~~~L~~~-----------------g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g 328 (844)
T TIGR02621 269 -KDSGGAILVFCRTVKHVRKVFAKLPKE-----------------KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSG 328 (844)
T ss_pred -hhCCCcEEEEECCHHHHHHHHHHHHhc-----------------CC--eEeeCCCCHHHHhhHHHHHHHHHHhcccccc
Confidence 234578999999999999999999865 43 7899999999999 78999987 4
Q ss_pred C-------CcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccc
Q 013392 386 K-------KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFN 436 (444)
Q Consensus 386 ~-------~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~ 436 (444)
. .+|||||+++++|+|++. ++||++..| .+.|+||+||+||+|+.|.+
T Consensus 329 ~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 329 SRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred ccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCc
Confidence 3 679999999999999976 888887766 68999999999999997655
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.3e-39 Score=317.79 Aligned_cols=322 Identities=17% Similarity=0.254 Sum_probs=225.3
Q ss_pred HHHHHHHHHcCCCCCCHHHHhHHHhHhcC------CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEec
Q 013392 28 TLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (444)
Q Consensus 28 ~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 101 (444)
.....+.+.++|. |++.|.++++.+..+ .+.++++|||+|||.+++++++..+.. +.++++++|
T Consensus 223 ~~~~~~~~~lpf~-lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---------g~qvlilaP 292 (630)
T TIGR00643 223 ELLTKFLASLPFK-LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---------GYQVALMAP 292 (630)
T ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---------CCcEEEECC
Confidence 4444455788996 999999999999865 257999999999999999998887743 567999999
Q ss_pred cHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHH---HHHh-cCCCcEEEeCchHHHHHHhccCccccCCccEEEEec
Q 013392 102 TRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARL-RKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (444)
Q Consensus 102 ~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE 177 (444)
|++|+.|+++.+++++...+ .....++++...... ...+ .++++|+|+||..+.+ ...+.++++||+||
T Consensus 293 T~~LA~Q~~~~~~~l~~~~g-i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDE 365 (630)
T TIGR00643 293 TEILAEQHYNSLRNLLAPLG-IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDE 365 (630)
T ss_pred HHHHHHHHHHHHHHHhcccC-cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEec
Confidence 99999999999999987655 445666666554432 2223 3458999999987753 23457899999999
Q ss_pred hhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccc
Q 013392 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (444)
Q Consensus 178 ~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (444)
+|++..... ..+....... ..++++++|||+.+....+......+...+. ..+...
T Consensus 366 aH~fg~~qr----~~l~~~~~~~-------------~~~~~l~~SATp~prtl~l~~~~~l~~~~i~----~~p~~r--- 421 (630)
T TIGR00643 366 QHRFGVEQR----KKLREKGQGG-------------FTPHVLVMSATPIPRTLALTVYGDLDTSIID----ELPPGR--- 421 (630)
T ss_pred hhhccHHHH----HHHHHhcccC-------------CCCCEEEEeCCCCcHHHHHHhcCCcceeeec----cCCCCC---
Confidence 998543211 1122221110 1568999999987654333221111111100 000000
Q ss_pred cccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchh-----
Q 013392 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV----- 332 (444)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~----- 332 (444)
..+.... ..... ...+...+.+.. ..+.+++|||+.++..
T Consensus 422 ------------------------------~~i~~~~--~~~~~-~~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~ 466 (630)
T TIGR00643 422 ------------------------------KPITTVL--IKHDE-KDIVYEFIEEEI--AKGRQAYVVYPLIEESEKLDL 466 (630)
T ss_pred ------------------------------CceEEEE--eCcch-HHHHHHHHHHHH--HhCCcEEEEEccccccccchH
Confidence 0011111 11222 233444444332 4467899999887543
Q ss_pred ---hhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEE
Q 013392 333 ---DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCII 409 (444)
Q Consensus 333 ---~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi 409 (444)
+.+++.+.+. ++++.+..+||+++.++|..++++|++|+.+|||||+++++|+|+|++++||
T Consensus 467 ~~a~~~~~~L~~~---------------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VI 531 (630)
T TIGR00643 467 KAAEALYERLKKA---------------FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMV 531 (630)
T ss_pred HHHHHHHHHHHhh---------------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEE
Confidence 3444444432 3478899999999999999999999999999999999999999999999999
Q ss_pred EccCCC-CcchhhhcccccccCCCcccccceE
Q 013392 410 QYDSAG-EATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 410 ~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
+++.|. +...|.|++||+||.|+.|.|+.+.
T Consensus 532 i~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 532 IEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred EeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 999886 5778999999999999999998765
No 52
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=3.3e-39 Score=309.00 Aligned_cols=332 Identities=14% Similarity=0.133 Sum_probs=220.9
Q ss_pred CCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhccc
Q 013392 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~ 120 (444)
.|+++|.++++.++.+++.++++|||+|||+++...+...+.. ...++||++|+++|+.||.++++++....
T Consensus 114 ~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~--------~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 114 EPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN--------YEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred CCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 5999999999999999999999999999999876543332222 23369999999999999999999976432
Q ss_pred CceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCC
Q 013392 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (444)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~ 200 (444)
. .....+.+|.... .+.+|+|+||+++.+... ..++++++||+||||++... .+..++..++.
T Consensus 186 ~-~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~- 248 (501)
T PHA02558 186 R-EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGK----SLTSIITKLDN- 248 (501)
T ss_pred c-cceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccch----hHHHHHHhhhc-
Confidence 2 2222334443322 346899999999876432 13468999999999998654 34455555543
Q ss_pred CCCCCCCCCcccccceeEEEEEeecchhhHHHH--HhhcCCCeEEcccCcCCCCCccccccc--CccccccccccCCCcc
Q 013392 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA--KISLETPVLIGLDEKKLPEDKSHVRFG--SLESDVKEEVEHPSTT 276 (444)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 276 (444)
..+++++|||+........ ...++ +..................+. ........ ..
T Consensus 249 --------------~~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~------~~ 307 (501)
T PHA02558 249 --------------CKFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPD------ED 307 (501)
T ss_pred --------------cceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCH------HH
Confidence 6689999999965332211 11122 222222111111000000000 00000000 00
Q ss_pred ccccCccccccccceeeE-EEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHH
Q 013392 277 MRSTTEDFKLPAQLVQRY-VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELK 355 (444)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 355 (444)
.. .. ........+ .......+...+..++.... ..+.+++|||+++++++.+++.|++.
T Consensus 308 ~~----~~-~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~------------- 367 (501)
T PHA02558 308 RV----KL-KGEDYQEEIKYITSHTKRNKWIANLALKLA--KKGENTFVMFKYVEHGKPLYEMLKKV------------- 367 (501)
T ss_pred hh----hh-cccchHHHHHHHhccHHHHHHHHHHHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHHc-------------
Confidence 00 00 000000000 11223345555555555543 34578999999999999999999886
Q ss_pred HhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEe-cccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcc
Q 013392 356 QLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST-DVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFY 434 (444)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t-~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g 434 (444)
+.++..+||+++.++|..+++.|++|+..+|||| +++++|+|+|++++||++.++.|...|+||+||++|.+. |
T Consensus 368 ----g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~-~ 442 (501)
T PHA02558 368 ----YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHG-S 442 (501)
T ss_pred ----CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCC-C
Confidence 8899999999999999999999999999999998 899999999999999999999999999999999999765 4
Q ss_pred cccceEEee
Q 013392 435 FNIPLIVCF 443 (444)
Q Consensus 435 ~~~~~i~~~ 443 (444)
+..+.|..|
T Consensus 443 K~~~~i~D~ 451 (501)
T PHA02558 443 KSIATVWDI 451 (501)
T ss_pred CceEEEEEe
Confidence 444444443
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.6e-38 Score=324.11 Aligned_cols=347 Identities=18% Similarity=0.127 Sum_probs=220.5
Q ss_pred EEcCCCCchhHHhHHHHHHHHhccCCC----CCCCCCceEEEEeccHHHHHHHHHHHHHHhcc-----------cCceee
Q 013392 61 VNAATGTGKTVAYLAPIINHLQSYSPR----IDRSSGTFALVLVPTRELCLQVYEILHKLLHR-----------FHWIVP 125 (444)
Q Consensus 61 l~~~tG~GKT~~~~~~~~~~~~~~~~~----~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~-----------~~~~~~ 125 (444)
|++|||||||++|.++++..+...... ....++.++|||+|+++|+.|+.+.++..+.. ...+..
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999888753211 11124578999999999999999988753211 123555
Q ss_pred EEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCC
Q 013392 126 GYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSI 205 (444)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (444)
...+++....+....+.+.++|+|+||++|..++.+.....++++++||+||+|.+.+..++..+...+.++....
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~---- 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL---- 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC----
Confidence 6666666666665666778999999999999887753344678999999999999886555555444444443211
Q ss_pred CCCCcccccceeEEEEEeecchhhHHHHHhhcC-CCeEEcccCcCCCCCccc-ccccCccccccccccCCCccccccCcc
Q 013392 206 GEGNEVSNVKRQNLLLSATLNEKVNHLAKISLE-TPVLIGLDEKKLPEDKSH-VRFGSLESDVKEEVEHPSTTMRSTTED 283 (444)
Q Consensus 206 ~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (444)
..+.|+|++|||+++. ..+..+... .+..+............. +...+.. ..... .
T Consensus 157 -------~~~~QrIgLSATI~n~-eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~-----~~~~~-------~-- 214 (1490)
T PRK09751 157 -------HTSAQRIGLSATVRSA-SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMD-----DVSSV-------A-- 214 (1490)
T ss_pred -------CCCCeEEEEEeeCCCH-HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchh-----hcccc-------c--
Confidence 1178999999999874 444444333 344332211110000000 0000000 00000 0
Q ss_pred ccccccceeeEEEcCCCCcH-HHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCC---CCchH---HH--
Q 013392 284 FKLPAQLVQRYVKVPCGSRL-AVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPH---SQPDM---EL-- 354 (444)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~k~-~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~-- 354 (444)
...-.... ........ .....++... ....++|||||++..|+.+...|++...... ..... ..
T Consensus 215 ---~~~~~~~~-~~r~~~i~~~v~~~il~~i---~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~ 287 (1490)
T PRK09751 215 ---SGTGEDSH-AGREGSIWPYIETGILDEV---LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFES 287 (1490)
T ss_pred ---cccccccc-hhhhhhhhHHHHHHHHHHH---hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhh
Confidence 00000000 00000111 1111223322 2356899999999999999999976431100 00000 00
Q ss_pred -H----Hh---hhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccc
Q 013392 355 -K----QL---FLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLK 426 (444)
Q Consensus 355 -~----~~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR 426 (444)
. .. .....+..+||++++++|..+++.|++|++++||||+.++.|||++++++||+++.|.++.+|+||+||
T Consensus 288 ~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGR 367 (1490)
T PRK09751 288 TSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGR 367 (1490)
T ss_pred ccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCC
Confidence 0 00 001236789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccceEE
Q 013392 427 HLPVGNFYFNIPLIV 441 (444)
Q Consensus 427 ~~R~g~~g~~~~~i~ 441 (444)
+||. ..|.+.+++.
T Consensus 368 AGR~-~gg~s~gli~ 381 (1490)
T PRK09751 368 AGHQ-VGGVSKGLFF 381 (1490)
T ss_pred CCCC-CCCccEEEEE
Confidence 9996 3455555543
No 54
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-38 Score=296.30 Aligned_cols=322 Identities=21% Similarity=0.268 Sum_probs=239.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHH
Q 013392 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (444)
Q Consensus 28 ~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~ 107 (444)
.+...|++.||+..+|+-|.++++.+++++++++.+|||.|||++|.+|++-. .+-+|||.|..+|..
T Consensus 4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~ 71 (590)
T COG0514 4 EAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHH
Confidence 34467888899999999999999999999999999999999999999998874 224899999999999
Q ss_pred HHHHHHHHHhcccCceeeEEEeCCcchhHH---HHHh-cCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhh
Q 013392 108 QVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARL-RKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (444)
Q Consensus 108 q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~ 183 (444)
++.+.++..+ +....+.++.+..+. ...+ ....++++.+|+++...-.. +.+....+.++++||||++..
T Consensus 72 DQV~~l~~~G-----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSq 145 (590)
T COG0514 72 DQVDQLEAAG-----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPISLVAIDEAHCISQ 145 (590)
T ss_pred HHHHHHHHcC-----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCceEEechHHHHhh
Confidence 9999999864 233333333222222 2223 34589999999988652111 111135789999999999999
Q ss_pred cc--hhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHH--hhcCCCeEEcccCcCCCCCcccccc
Q 013392 184 LG--FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK--ISLETPVLIGLDEKKLPEDKSHVRF 259 (444)
Q Consensus 184 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (444)
|+ |.+....+-......+ ...++++|||.++....-+. +.+..+..+....+-
T Consensus 146 WGhdFRP~Y~~lg~l~~~~~-------------~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR---------- 202 (590)
T COG0514 146 WGHDFRPDYRRLGRLRAGLP-------------NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR---------- 202 (590)
T ss_pred cCCccCHhHHHHHHHHhhCC-------------CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC----------
Confidence 86 5555444443333221 66889999999886665333 444454443322220
Q ss_pred cCccccccccccCCCccccccCccccccccceeeEEEcC-CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhh
Q 013392 260 GSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP-CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSL 338 (444)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~ 338 (444)
+++........ ...+.. .+.+ .........||||.+++.++.+++.
T Consensus 203 ----------------------------pNi~~~v~~~~~~~~q~~----fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~ 249 (590)
T COG0514 203 ----------------------------PNLALKVVEKGEPSDQLA----FLAT-VLPQLSKSGIIYCLTRKKVEELAEW 249 (590)
T ss_pred ----------------------------chhhhhhhhcccHHHHHH----HHHh-hccccCCCeEEEEeeHHhHHHHHHH
Confidence 11111111111 111222 3332 1124456789999999999999999
Q ss_pred hhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcc
Q 013392 339 LSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEAT 418 (444)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~ 418 (444)
|... |+.+..||++++.++|+.+.++|..++.+|+|||.+++.|||-|+++.||||+.|.|.+
T Consensus 250 L~~~-----------------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 250 LRKN-----------------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred HHHC-----------------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 9987 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccCCCcccccceE
Q 013392 419 EYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 419 ~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
.|.|-+||+||.|.+..|+.+.
T Consensus 313 sYyQE~GRAGRDG~~a~aill~ 334 (590)
T COG0514 313 SYYQETGRAGRDGLPAEAILLY 334 (590)
T ss_pred HHHHHHhhccCCCCcceEEEee
Confidence 9999999999999999998774
No 55
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4.9e-39 Score=302.68 Aligned_cols=367 Identities=18% Similarity=0.193 Sum_probs=244.8
Q ss_pred CCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhccc
Q 013392 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~ 120 (444)
.+|+||.+.+...+ ++++|+++|||+|||++|+..++.++.. -+..+++|++|++-|+.|+...+..++..
T Consensus 62 ~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-------~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~- 132 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-------RPKGKVVFLAPTRPLVNQQIACFSIYLIP- 132 (746)
T ss_pred cccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-------CCcceEEEeeCCchHHHHHHHHHhhccCc-
Confidence 59999999999988 9999999999999999999999999977 34578999999999999999878877654
Q ss_pred CceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCC
Q 013392 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (444)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~ 200 (444)
.......++......+..+....+|+|+||+.+.+.+.+...-.++++.++||||||+......+..+...+..+...
T Consensus 133 --~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 133 --YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred --ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc
Confidence 233344445455555557777889999999999998887444446889999999999988876666666444444442
Q ss_pred CCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEccc-----CcCC---------CCC--------ccc--
Q 013392 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD-----EKKL---------PED--------KSH-- 256 (444)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~-----~~~~---------~~~--------~~~-- 256 (444)
..|++++||||+...+....-...-..-+.+. ...+ +.. ...
T Consensus 211 --------------~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~ 276 (746)
T KOG0354|consen 211 --------------GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFG 276 (746)
T ss_pred --------------cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHH
Confidence 44999999999865554433211100000000 0000 000 000
Q ss_pred -----------------------------ccccCccccccccccCCCcccc-----------------------------
Q 013392 257 -----------------------------VRFGSLESDVKEEVEHPSTTMR----------------------------- 278 (444)
Q Consensus 257 -----------------------------~~~~~~~~~~~~~~~~~~~~~~----------------------------- 278 (444)
..............+.+.....
T Consensus 277 ~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~ 356 (746)
T KOG0354|consen 277 MIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYE 356 (746)
T ss_pred HHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhcc
Confidence 0000000000000000000000
Q ss_pred ----c------c-Cccc----cccccceeeEEEcC-CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhc
Q 013392 279 ----S------T-TEDF----KLPAQLVQRYVKVP-CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEF 342 (444)
Q Consensus 279 ----~------~-~~~~----~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~ 342 (444)
. . .... .....+.+.....+ ...|+..+.+.+.+.++..+..++||||.+++.|..+...|.+.
T Consensus 357 e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~ 436 (746)
T KOG0354|consen 357 EVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQL 436 (746)
T ss_pred ccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhh
Confidence 0 0 0000 00000111111111 36788899999988888888899999999999999999999852
Q ss_pred ccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhh
Q 013392 343 QWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422 (444)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q 422 (444)
-.. .- -...|-|..-..-..+|++.++.+++++|++|+.+|||||+++++|+|++.|+.||-|+...|+...+|
T Consensus 437 ~~~-~i-----r~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQ 510 (746)
T KOG0354|consen 437 HEL-GI-----KAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQ 510 (746)
T ss_pred hhc-cc-----ccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHH
Confidence 110 00 000011222222235889999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcccccceE
Q 013392 423 RYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 423 ~~GR~~R~g~~g~~~~~i 440 (444)
|+|| ||. +.|.++.+.
T Consensus 511 rrGR-gRa-~ns~~vll~ 526 (746)
T KOG0354|consen 511 RRGR-GRA-RNSKCVLLT 526 (746)
T ss_pred Hhcc-ccc-cCCeEEEEE
Confidence 9999 995 566666543
No 56
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=285.75 Aligned_cols=350 Identities=21% Similarity=0.208 Sum_probs=268.1
Q ss_pred hhhhccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHh-HhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCC
Q 013392 10 TVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRI 88 (444)
Q Consensus 10 ~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~ 88 (444)
++...-...+.+.+++++...+.| +..|+.++.|+|.-++++ ++.|+|.+++.+|+||||++.-++-+..++.
T Consensus 186 a~~~~~~r~~vdeLdipe~fk~~l-k~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----- 259 (830)
T COG1202 186 AETDEVERVPVDELDIPEKFKRML-KREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----- 259 (830)
T ss_pred ccccccccccccccCCcHHHHHHH-HhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-----
Confidence 444556778999999999999999 666999999999999987 6699999999999999999999988888766
Q ss_pred CCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhH---HHHHhcCCCcEEEeCchHHHHHHhccCcc
Q 013392 89 DRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK---EKARLRKGISILVATPGRLLDHLKHTSSF 165 (444)
Q Consensus 89 ~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iii~T~~~l~~~l~~~~~~ 165 (444)
.+.+.||++|..+|++|-++.|+.--..++......+..+.-... ....-...+||+|+||+-+-.++... .
T Consensus 260 ---~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~ 334 (830)
T COG1202 260 ---GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--K 334 (830)
T ss_pred ---CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--C
Confidence 477899999999999999999987666555433333322111111 11223345899999999998888753 5
Q ss_pred ccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcc
Q 013392 166 LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245 (444)
Q Consensus 166 ~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~ 245 (444)
.+.+++.||+||+|.+-+...+..++-+..+++...+ ..|++.+|||+.+..+-...+.. ..+..
T Consensus 335 ~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~------------~AQ~i~LSATVgNp~elA~~l~a-~lV~y-- 399 (830)
T COG1202 335 DLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFP------------GAQFIYLSATVGNPEELAKKLGA-KLVLY-- 399 (830)
T ss_pred cccccceEEeeeeeeccchhcccchhhHHHHHHHhCC------------CCeEEEEEeecCChHHHHHHhCC-eeEee--
Confidence 5679999999999987776777777777766665432 78999999999886544444332 22221
Q ss_pred cCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEc-CCCCcHHHHHHHHHhhc----ccccCc
Q 013392 246 DEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKV-PCGSRLAVLLSILKHLF----DTEVSQ 320 (444)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~----~~~~~~ 320 (444)
+.. |..+....+.+ +...|...+..+.+.-+ ..+-.+
T Consensus 400 ~~R--------------------------------------PVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rG 441 (830)
T COG1202 400 DER--------------------------------------PVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRG 441 (830)
T ss_pred cCC--------------------------------------CCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCC
Confidence 111 22233444444 46778888888776432 233457
Q ss_pred eEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCC
Q 013392 321 KLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGL 400 (444)
Q Consensus 321 ~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~ 400 (444)
.+|||++++..|+.++++|... |+++..+|++++-.+|..+...|.++++.++|+|.+++.|+
T Consensus 442 QtIVFT~SRrr~h~lA~~L~~k-----------------G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGV 504 (830)
T COG1202 442 QTIVFTYSRRRCHELADALTGK-----------------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGV 504 (830)
T ss_pred ceEEEecchhhHHHHHHHhhcC-----------------CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCC
Confidence 9999999999999999999988 89999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEE---ccCCC-CcchhhhcccccccCC--CcccccceE
Q 013392 401 DFPKVKCIIQ---YDSAG-EATEYVHRYLKHLPVG--NFYFNIPLI 440 (444)
Q Consensus 401 di~~~~~vi~---~~~~~-s~~~~~Q~~GR~~R~g--~~g~~~~~i 440 (444)
|+|.-.+|+- ++.-| |+..|.||.||+||.+ ..|++|.++
T Consensus 505 DFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllv 550 (830)
T COG1202 505 DFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLV 550 (830)
T ss_pred CCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEe
Confidence 9987665542 33333 7889999999999977 588887664
No 57
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-39 Score=259.45 Aligned_cols=312 Identities=26% Similarity=0.446 Sum_probs=266.6
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
|+-|.+.-|.+++.+++ -..||+.|...|.++++...-|.|+++++..|.|||.++.++.++++... .+.-.+
T Consensus 41 ssgfrdfllkpellrai-vdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv------~g~vsv 113 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAI-VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV------DGQVSV 113 (387)
T ss_pred ccchhhhhcCHHHHHHH-HhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC------CCeEEE
Confidence 45677777999999999 45599999999999999999999999999999999999999999988652 234458
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
+++|.+++|+-|...++..+.+.++.....++.+|.........+.+.++|+|+||.++..+.+. +.+.++.++..|+|
T Consensus 114 lvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 114 LVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVLD 192 (387)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceeehh
Confidence 99999999999999999999999999999999999988888888888999999999999998886 78888999999999
Q ss_pred chhHhhhc-chhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcc
Q 013392 177 EADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (444)
Q Consensus 177 E~h~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
||+.++.. ...+.+.++++..+. ..|...||||++..+...+..++.+|..+.++....
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~---------------~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~K----- 252 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPH---------------EKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAK----- 252 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcc---------------cceeeeeeeecchhhHHHHHhhhcCchhhhccchhh-----
Confidence 99988776 567888888888776 889999999999999999999999998887766531
Q ss_pred cccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhh
Q 013392 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (444)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l 335 (444)
.....+.++|+......|...+.++|..+ .-..++||+.+...
T Consensus 253 -----------------------------LtLHGLqQ~YvkLke~eKNrkl~dLLd~L----eFNQVvIFvKsv~R---- 295 (387)
T KOG0329|consen 253 -----------------------------LTLHGLQQYYVKLKENEKNRKLNDLLDVL----EFNQVVIFVKSVQR---- 295 (387)
T ss_pred -----------------------------hhhhhHHHHHHhhhhhhhhhhhhhhhhhh----hhcceeEeeehhhh----
Confidence 23456778888887777777777766543 23578898866544
Q ss_pred hhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCC
Q 013392 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (444)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~ 415 (444)
. + | ..+ +|||+.+++|+|+..++.+++|+.|.
T Consensus 296 ------l----------------------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~ 327 (387)
T KOG0329|consen 296 ------L----------------------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPE 327 (387)
T ss_pred ------h----------------------------h----------h---hhh-hHHhhhhccccCcccceeeeccCCCC
Confidence 0 0 2 123 88999999999999999999999999
Q ss_pred CcchhhhcccccccCCCcccccceEE
Q 013392 416 EATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 416 s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+..+|.||.||+||+|.+|.+|.|+.
T Consensus 328 ~~DtYlHrv~rAgrfGtkglaitfvs 353 (387)
T KOG0329|consen 328 DSDTYLHRVARAGRFGTKGLAITFVS 353 (387)
T ss_pred CchHHHHHhhhhhccccccceeehhc
Confidence 99999999999999999999999875
No 58
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4e-37 Score=301.17 Aligned_cols=354 Identities=20% Similarity=0.212 Sum_probs=252.2
Q ss_pred CCHHHHHHHHHHcCCCCCCHHHHhHHHhHh-cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccH
Q 013392 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (444)
Q Consensus 25 l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~-~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~ 103 (444)
+.+.+.+.+ +..++.++.+.|++++.... .++|+++++|||+|||++++++++..+.. .+.+++++||++
T Consensus 16 ~~~~v~~i~-~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~--------~~~k~vYivPlk 86 (766)
T COG1204 16 LDDRVLEIL-KGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE--------GGGKVVYIVPLK 86 (766)
T ss_pred ccHHHHHHh-ccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh--------cCCcEEEEeChH
Confidence 667777777 66688889999999998877 45999999999999999999999998876 267799999999
Q ss_pred HHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhh
Q 013392 104 ELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (444)
Q Consensus 104 ~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~ 183 (444)
+|+.|.++++++ +..++ ......+++..... ....+++|+|+||+++-..+++... ....+++||+||+|.+.+
T Consensus 87 ALa~Ek~~~~~~-~~~~G-irV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d 160 (766)
T COG1204 87 ALAEEKYEEFSR-LEELG-IRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGD 160 (766)
T ss_pred HHHHHHHHHhhh-HHhcC-CEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCC
Confidence 999999999993 33344 44444444433332 2335678999999999998887544 678999999999997777
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCcc
Q 013392 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLE 263 (444)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (444)
...+..++.+.......+. ..+++++|||+++..+.-.++..... .-.+..... .
T Consensus 161 ~~RG~~lE~iv~r~~~~~~------------~~rivgLSATlpN~~evA~wL~a~~~-~~~~rp~~l------------~ 215 (766)
T COG1204 161 RTRGPVLESIVARMRRLNE------------LIRIVGLSATLPNAEEVADWLNAKLV-ESDWRPVPL------------R 215 (766)
T ss_pred cccCceehhHHHHHHhhCc------------ceEEEEEeeecCCHHHHHHHhCCccc-ccCCCCccc------------c
Confidence 7688888888887776543 57999999999986555444332211 111111100 0
Q ss_pred ccccccccCCCccccccCccccccccceeeEEEcCCC------CcHHHHHHHHHhhcccccCceEEEEecccchhhhhhh
Q 013392 264 SDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG------SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (444)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~ 337 (444)
.. .-....+...... .+.......+.+. ...++.++|||+++..+...+.
T Consensus 216 ~~----------------------v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~--~~~~~qvLvFv~sR~~a~~~A~ 271 (766)
T COG1204 216 RG----------------------VPYVGAFLGADGKKKTWPLLIDNLALELVLES--LAEGGQVLVFVHSRKEAEKTAK 271 (766)
T ss_pred cC----------------------CccceEEEEecCccccccccchHHHHHHHHHH--HhcCCeEEEEEecCchHHHHHH
Confidence 00 0011111111111 1223333334333 2567899999999999999998
Q ss_pred hhhhccc---CCC-------CCch-H---------HHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccc
Q 013392 338 LLSEFQW---SPH-------SQPD-M---------ELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAA 397 (444)
Q Consensus 338 ~l~~~~~---~~~-------~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~ 397 (444)
.+..... ... .... . ..........++.+|++++.++|.-+.+.|+.|.++||+||+++.
T Consensus 272 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA 351 (766)
T COG1204 272 KLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLA 351 (766)
T ss_pred HHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHh
Confidence 8873111 000 0000 0 111223356788999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEE----cc-----CCCCcchhhhcccccccCCCcccccceEEe
Q 013392 398 RGLDFPKVKCIIQ----YD-----SAGEATEYVHRYLKHLPVGNFYFNIPLIVC 442 (444)
Q Consensus 398 ~G~di~~~~~vi~----~~-----~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~~ 442 (444)
+|+|+|.-++||- |+ .+-+.-+++|++||+||.|-...+..+|++
T Consensus 352 ~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 352 AGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred hhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 9999998777763 44 334567999999999999998888888876
No 59
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=4.6e-36 Score=306.87 Aligned_cols=323 Identities=20% Similarity=0.272 Sum_probs=227.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHH
Q 013392 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (444)
Q Consensus 28 ~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~ 107 (444)
+..+.+.+.+|+. |+++|+++++.++.|+++++++|||+|||..++ ++...+.. ++.+++||+||++|+.
T Consensus 68 ~~~~~f~~~~G~~-pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l-~~~~~l~~--------~g~~alIL~PTreLa~ 137 (1176)
T PRK09401 68 EFEKFFKKKTGSK-PWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGL-VMSLYLAK--------KGKKSYIIFPTRLLVE 137 (1176)
T ss_pred HHHHHHHHhcCCC-CcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHH-HHHHHHHh--------cCCeEEEEeccHHHHH
Confidence 4455666677895 999999999999999999999999999996444 34333322 3677999999999999
Q ss_pred HHHHHHHHHhcccCceeeEEEeCCcc----hhHHHHHhc-CCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhh
Q 013392 108 QVYEILHKLLHRFHWIVPGYVMGGEN----RSKEKARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 108 q~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~ 182 (444)
|+.+.+++++...+........++.. .......+. ++++|+|+||+.|.+.+. .+....++++|+||||+++
T Consensus 138 Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 138 QVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhh
Confidence 99999999987655333333333221 122233333 458999999999998765 2334569999999999998
Q ss_pred h-----------cchh-HHHHHHHHHhcCCCCCC-----C----CCCCcccccceeEEEEEeecchhhHHHHHhhcCCCe
Q 013392 183 E-----------LGFG-KEIEEILDILGSRNIGS-----I----GEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV 241 (444)
Q Consensus 183 ~-----------~~~~-~~~~~~~~~l~~~~~~~-----~----~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~ 241 (444)
+ .+|. ..+..++..++...... . ...........|++++|||.++..... ..+..+.
T Consensus 215 ~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~--~l~~~ll 292 (1176)
T PRK09401 215 KSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV--KLFRELL 292 (1176)
T ss_pred hcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH--HHhhccc
Confidence 6 3453 56666666665311000 0 000001122679999999997642211 1112222
Q ss_pred EEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCce
Q 013392 242 LIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQK 321 (444)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~ 321 (444)
.+.+... .....++.+.++..+ .+...+..+++.. +..
T Consensus 293 ~~~v~~~-----------------------------------~~~~rnI~~~yi~~~--~k~~~L~~ll~~l-----~~~ 330 (1176)
T PRK09401 293 GFEVGSP-----------------------------------VFYLRNIVDSYIVDE--DSVEKLVELVKRL-----GDG 330 (1176)
T ss_pred eEEecCc-----------------------------------ccccCCceEEEEEcc--cHHHHHHHHHHhc-----CCC
Confidence 2211111 012245566666554 5667777777653 357
Q ss_pred EEEEecccch---hhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEE----ec
Q 013392 322 LVVFFSTCDA---VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS----TD 394 (444)
Q Consensus 322 ~ivf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~----t~ 394 (444)
+||||++++. ++.+.+.|+.. |+++..+||++ .+.+++|++|+.+|||| |+
T Consensus 331 ~LIFv~t~~~~~~ae~l~~~L~~~-----------------gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~td 388 (1176)
T PRK09401 331 GLIFVPSDKGKEYAEELAEYLEDL-----------------GINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYG 388 (1176)
T ss_pred EEEEEecccChHHHHHHHHHHHHC-----------------CCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCC
Confidence 9999999888 99999999987 89999999999 23459999999999999 68
Q ss_pred ccccCCCCCC-CcEEEEccCCC------Ccchhhhccccccc
Q 013392 395 VAARGLDFPK-VKCIIQYDSAG------EATEYVHRYLKHLP 429 (444)
Q Consensus 395 ~~~~G~di~~-~~~vi~~~~~~------s~~~~~Q~~GR~~R 429 (444)
.+++|+|+|+ +++||+|+.|. ....|.+|+||..+
T Consensus 389 v~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 389 VLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred ceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 9999999999 89999999998 67889999999853
No 60
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.7e-36 Score=298.60 Aligned_cols=347 Identities=24% Similarity=0.263 Sum_probs=253.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHH
Q 013392 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (444)
Q Consensus 28 ~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~ 107 (444)
.+...+.+. |...|+.||.+|+..+.+|++++|..+||||||.+|++|+++.+.. ....++|+|.|+++|++
T Consensus 58 ~l~~~l~~~-g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~-------~~~a~AL~lYPtnALa~ 129 (851)
T COG1205 58 SLKSALVKA-GIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR-------DPSARALLLYPTNALAN 129 (851)
T ss_pred HHHHHHHHh-ccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh-------CcCccEEEEechhhhHh
Confidence 356677455 7777999999999999999999999999999999999999999988 44557999999999999
Q ss_pred HHHHHHHHHhcccCceeeEEEeCCcchhHHH-HHhcCCCcEEEeCchHHHHHHhccC---ccccCCccEEEEechhHhhh
Q 013392 108 QVYEILHKLLHRFHWIVPGYVMGGENRSKEK-ARLRKGISILVATPGRLLDHLKHTS---SFLHTNLRWIIFDEADRILE 183 (444)
Q Consensus 108 q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iii~T~~~l~~~l~~~~---~~~~~~~~lvV~DE~h~~~~ 183 (444)
++.++++++....+.......++|+.....+ .-..+.++|+++||++|...+.... .+.++.+++||+||+| .+.
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH-tYr 208 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH-TYR 208 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce-ecc
Confidence 9999999999888743444444555555444 5667789999999999988555422 2355679999999999 677
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCcc
Q 013392 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLE 263 (444)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (444)
..++..+..+++++.... .......|+++.|||+.+..+.........-... +..+..+...
T Consensus 209 Gv~GS~vA~llRRL~~~~--------~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g~~~~~--------- 270 (851)
T COG1205 209 GVQGSEVALLLRRLLRRL--------RRYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDGSPRGL--------- 270 (851)
T ss_pred ccchhHHHHHHHHHHHHH--------hccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCCCCCCc---------
Confidence 667776666666554311 1111278999999999887666555443333332 3333222211
Q ss_pred ccccccccCCCccccccCccccccccceeeEEEcC---------CCCcHHHHHHHHHhhcccccCceEEEEecccchhhh
Q 013392 264 SDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP---------CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (444)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~ 334 (444)
......-+ ..+....+..++.... ..+.++|+|+.++..++.
T Consensus 271 ---------------------------~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~--~~~~~tL~F~~sr~~~e~ 321 (851)
T COG1205 271 ---------------------------RYFVRREPPIRELAESIRRSALAELATLAALLV--RNGIQTLVFFRSRKQVEL 321 (851)
T ss_pred ---------------------------eEEEEeCCcchhhhhhcccchHHHHHHHHHHHH--HcCceEEEEEehhhhhhh
Confidence 11111111 1233333334443332 456799999999999999
Q ss_pred hhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCC
Q 013392 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (444)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~ 414 (444)
+..-......-.. .-....+..+++++..++|.++...|++|+..++++|++++-|+|+.+++.||..+.|
T Consensus 322 ~~~~~~~~~~~~~---------~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P 392 (851)
T COG1205 322 LYLSPRRRLVREG---------GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYP 392 (851)
T ss_pred hhhchhHHHhhcc---------hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCC
Confidence 9733222110000 0013567889999999999999999999999999999999999999999999999999
Q ss_pred C-CcchhhhcccccccCCCcccccce
Q 013392 415 G-EATEYVHRYLKHLPVGNFYFNIPL 439 (444)
Q Consensus 415 ~-s~~~~~Q~~GR~~R~g~~g~~~~~ 439 (444)
. +..++.||.||+||.++.+..+.+
T Consensus 393 ~~s~~~~~Q~~GRaGR~~~~~l~~~v 418 (851)
T COG1205 393 GVSVLSFRQRAGRAGRRGQESLVLVV 418 (851)
T ss_pred CchHHHHHHhhhhccCCCCCceEEEE
Confidence 9 999999999999999865554443
No 61
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.3e-37 Score=295.50 Aligned_cols=323 Identities=15% Similarity=0.128 Sum_probs=210.3
Q ss_pred CCCHHHHhHHHhHhc-C--CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 41 APTKVQAQAIPVILS-G--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~-~--~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
.||+||.+++..+.. + +..++++|||+|||++++.++... +.++|||||+..|+.||.+++.+|+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l------------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV------------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh------------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 389999999999884 3 478999999999999988765442 2339999999999999999999986
Q ss_pred cccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhcc-------CccccCCccEEEEechhHhhhcchhHHH
Q 013392 118 HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT-------SSFLHTNLRWIIFDEADRILELGFGKEI 190 (444)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~-------~~~~~~~~~lvV~DE~h~~~~~~~~~~~ 190 (444)
.... .....+.++.... ......|+|+|++++.....+. ..+....+++||+||||++... ..
T Consensus 323 ~l~~-~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~----~f 392 (732)
T TIGR00603 323 TIDD-SQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA----MF 392 (732)
T ss_pred CCCC-ceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH----HH
Confidence 4322 2333444332211 1233579999999886432211 1222357899999999997543 33
Q ss_pred HHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHH--HhhcCCCeEEcccCcCCCCCcccccccCccccccc
Q 013392 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA--KISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKE 268 (444)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (444)
..++..+. ....+++||||........ ...++ |..+...-..+.......++... +
T Consensus 393 r~il~~l~----------------a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~-----e 450 (732)
T TIGR00603 393 RRVLTIVQ----------------AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCA-----E 450 (732)
T ss_pred HHHHHhcC----------------cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEE-----E
Confidence 34444443 3456999999965332221 11222 33322221111111111110000 0
Q ss_pred cccCCC--ccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCC
Q 013392 269 EVEHPS--TTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSP 346 (444)
Q Consensus 269 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~ 346 (444)
...... ........ ..-........+..|...+..+++.+ ...+.++||||++...+..+++.|.
T Consensus 451 v~v~~t~~~~~~yl~~-----~~~~k~~l~~~np~K~~~~~~Li~~h--e~~g~kiLVF~~~~~~l~~~a~~L~------ 517 (732)
T TIGR00603 451 VWCPMTPEFYREYLRE-----NSRKRMLLYVMNPNKFRACQFLIRFH--EQRGDKIIVFSDNVFALKEYAIKLG------ 517 (732)
T ss_pred EEecCCHHHHHHHHHh-----cchhhhHHhhhChHHHHHHHHHHHHH--hhcCCeEEEEeCCHHHHHHHHHHcC------
Confidence 000000 00000000 00000111234556777777777654 2467899999999998888877662
Q ss_pred CCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcC-CCcEEEEecccccCCCCCCCcEEEEccCC-CCcchhhhcc
Q 013392 347 HSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE-KKALLLSTDVAARGLDFPKVKCIIQYDSA-GEATEYVHRY 424 (444)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~iLi~t~~~~~G~di~~~~~vi~~~~~-~s~~~~~Q~~ 424 (444)
+..++|+++..+|.++++.|++| ..++||+|+++.+|+|+|++++||+++.| .|...|+||+
T Consensus 518 ----------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRl 581 (732)
T TIGR00603 518 ----------------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRL 581 (732)
T ss_pred ----------------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHh
Confidence 24489999999999999999875 78999999999999999999999999987 5999999999
Q ss_pred cccccCCCcccc
Q 013392 425 LKHLPVGNFYFN 436 (444)
Q Consensus 425 GR~~R~g~~g~~ 436 (444)
||++|.+..|.+
T Consensus 582 GRilR~~~~~~~ 593 (732)
T TIGR00603 582 GRILRAKKGSDA 593 (732)
T ss_pred cccccCCCCCcc
Confidence 999999887765
No 62
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=8e-36 Score=302.91 Aligned_cols=355 Identities=22% Similarity=0.237 Sum_probs=236.4
Q ss_pred CCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhccc
Q 013392 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~ 120 (444)
++|+||.+++..++.+ ++++++|||+|||+++++++...+.. .+.++|||+|+++|+.||.+.+++++...
T Consensus 15 ~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~--------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 85 (773)
T PRK13766 15 EARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK--------KGGKVLILAPTKPLVEQHAEFFRKFLNIP 85 (773)
T ss_pred CccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh--------CCCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 5999999999888776 89999999999999999888877632 35679999999999999999999986532
Q ss_pred CceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCC
Q 013392 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (444)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~ 200 (444)
+ .....+.++... ..+.....+.+|+|+||+.+...+.. ..+.+.++++|||||||++........+...+.....
T Consensus 86 ~-~~v~~~~g~~~~-~~r~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~- 161 (773)
T PRK13766 86 E-EKIVVFTGEVSP-EKRAELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAK- 161 (773)
T ss_pred C-ceEEEEeCCCCH-HHHHHHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCC-
Confidence 2 233444444433 34556667789999999999887655 5566778999999999998655333333333222222
Q ss_pred CCCCCCCCCcccccceeEEEEEeecchhhHHH---HHhhcCCCeEEcccCcC-----------------CCCCccc----
Q 013392 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHL---AKISLETPVLIGLDEKK-----------------LPEDKSH---- 256 (444)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~---~~~~~~~~~~~~~~~~~-----------------~~~~~~~---- 256 (444)
.+.++++||||......+ ..........+....+. ++.....
T Consensus 162 --------------~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~ 227 (773)
T PRK13766 162 --------------NPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDL 227 (773)
T ss_pred --------------CCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHH
Confidence 567999999986443322 22111111111100000 0000000
Q ss_pred ------------ccccCccccc---------------cccccCCCccc---c----------------------------
Q 013392 257 ------------VRFGSLESDV---------------KEEVEHPSTTM---R---------------------------- 278 (444)
Q Consensus 257 ------------~~~~~~~~~~---------------~~~~~~~~~~~---~---------------------------- 278 (444)
...+...... ........... .
T Consensus 228 l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~ 307 (773)
T PRK13766 228 LNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYL 307 (773)
T ss_pred HHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 0000000000 00000000000 0
Q ss_pred ----cc------C---cc-cccc---ccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhh
Q 013392 279 ----ST------T---ED-FKLP---AQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE 341 (444)
Q Consensus 279 ----~~------~---~~-~~~~---~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~ 341 (444)
.. . .. ...+ ..+...........|...+.++|++.++...+.++||||++++.++.+.+.|..
T Consensus 308 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~ 387 (773)
T PRK13766 308 ERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK 387 (773)
T ss_pred HHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 00 0 00 0000 000000001233578888889988876656788999999999999999999976
Q ss_pred cccCCCCCchHHHHHhhhccceEEEecC--------CCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC
Q 013392 342 FQWSPHSQPDMELKQLFLRCKTFRLHGN--------MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (444)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~ 413 (444)
. ++.+..++|. +++.+|.+++++|++|+.++||+|+++++|+|+|++++||+|++
T Consensus 388 ~-----------------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~ 450 (773)
T PRK13766 388 E-----------------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEP 450 (773)
T ss_pred C-----------------CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCC
Confidence 5 6777777775 88999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhcccccccCCCcccccceE
Q 013392 414 AGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 414 ~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
|++...|+||+||+||.|. |.++.++
T Consensus 451 ~~s~~r~iQR~GR~gR~~~-~~v~~l~ 476 (773)
T PRK13766 451 VPSEIRSIQRKGRTGRQEE-GRVVVLI 476 (773)
T ss_pred CCCHHHHHHHhcccCcCCC-CEEEEEE
Confidence 9999999999999999765 6666554
No 63
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=6.9e-36 Score=288.68 Aligned_cols=311 Identities=14% Similarity=0.108 Sum_probs=211.9
Q ss_pred HHHHhHHHhHhcCCcEEEEcCCCCchhHHhH---------HHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHH
Q 013392 44 KVQAQAIPVILSGRHVLVNAATGTGKTVAYL---------APIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (444)
Q Consensus 44 ~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~---------~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~ 114 (444)
..|.++++.+.++++++++|+||+|||.+.- ++.+..+.... ....+.++++++|+++|+.|+..++.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~---~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID---PNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc---cccCCcEEEEECcHHHHHHHHHHHHH
Confidence 4789999999999999999999999998632 22233222110 11235679999999999999999988
Q ss_pred HHhccc--CceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHH
Q 013392 115 KLLHRF--HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEE 192 (444)
Q Consensus 115 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~ 192 (444)
+..+.. .........++... ..........+|+|+|+.... ..++.+++||+||+|+.... .+.+..
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l--------~~L~~v~~VVIDEaHEr~~~--~DllL~ 312 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL--------NKLFDYGTVIIDEVHEHDQI--GDIIIA 312 (675)
T ss_pred HHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc--------cccccCCEEEccccccCccc--hhHHHH
Confidence 765431 22334555666542 211222235689999965211 23568999999999997554 344455
Q ss_pred HHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccC
Q 013392 193 ILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEH 272 (444)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (444)
++..+... .+|+++||||++.....+. .++.++..+.+..... .
T Consensus 313 llk~~~~~--------------~rq~ILmSATl~~dv~~l~-~~~~~p~~I~I~grt~----~----------------- 356 (675)
T PHA02653 313 VARKHIDK--------------IRSLFLMTATLEDDRDRIK-EFFPNPAFVHIPGGTL----F----------------- 356 (675)
T ss_pred HHHHhhhh--------------cCEEEEEccCCcHhHHHHH-HHhcCCcEEEeCCCcC----C-----------------
Confidence 55443321 4589999999987777664 5666776665432110 0
Q ss_pred CCccccccCccccccccceeeEEEcC----------CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhc
Q 013392 273 PSTTMRSTTEDFKLPAQLVQRYVKVP----------CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEF 342 (444)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~ 342 (444)
.+.+.+.... ...+ ..+...+.... ...++.+|||++++.+++.+.+.|.+.
T Consensus 357 ----------------pV~~~yi~~~~~~~~~~~y~~~~k-~~~l~~L~~~~-~~~~g~iLVFlpg~~ei~~l~~~L~~~ 418 (675)
T PHA02653 357 ----------------PISEVYVKNKYNPKNKRAYIEEEK-KNIVTALKKYT-PPKGSSGIVFVASVSQCEEYKKYLEKR 418 (675)
T ss_pred ----------------CeEEEEeecCcccccchhhhHHHH-HHHHHHHHHhh-cccCCcEEEEECcHHHHHHHHHHHHhh
Confidence 0111111100 0111 12223332221 123468999999999999999999764
Q ss_pred ccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHh-hcCCCcEEEEecccccCCCCCCCcEEEEcc---CCC---
Q 013392 343 QWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAF-KTEKKALLLSTDVAARGLDFPKVKCIIQYD---SAG--- 415 (444)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~iLi~t~~~~~G~di~~~~~vi~~~---~~~--- 415 (444)
. ++..+..+||++++. ++.+++| ++|+.+|||||+++++|+|+|++++||++| .|.
T Consensus 419 ~---------------~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~ 481 (675)
T PHA02653 419 L---------------PIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFG 481 (675)
T ss_pred c---------------CCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCccc
Confidence 1 257899999999975 4666777 689999999999999999999999999998 554
Q ss_pred ------CcchhhhcccccccCCCcccccceE
Q 013392 416 ------EATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 416 ------s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
|...|.||+||+||. ++|.|+.+.
T Consensus 482 g~~~~iSkasa~QRaGRAGR~-~~G~c~rLy 511 (675)
T PHA02653 482 GKEMFISKSMRTQRKGRVGRV-SPGTYVYFY 511 (675)
T ss_pred CcccccCHHHHHHhccCcCCC-CCCeEEEEE
Confidence 777999999999998 899999875
No 64
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.5e-35 Score=281.62 Aligned_cols=338 Identities=19% Similarity=0.165 Sum_probs=240.1
Q ss_pred HHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHH
Q 013392 31 DQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (444)
Q Consensus 31 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 110 (444)
+......|+. |++.|..+++.++.|+ |..+.||+|||+++++|++..... +..++|++||+.|+.|.+
T Consensus 94 Ea~~R~lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---------G~~v~VvTptreLA~qda 161 (656)
T PRK12898 94 EASGRVLGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---------GLPVHVITVNDYLAERDA 161 (656)
T ss_pred HHHHHHhCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---------CCeEEEEcCcHHHHHHHH
Confidence 3444555886 9999999999999998 999999999999999999987644 567999999999999999
Q ss_pred HHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHH-HHHHhcc------------------------Ccc
Q 013392 111 EILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHT------------------------SSF 165 (444)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~------------------------~~~ 165 (444)
+++.+++..++ ....++.++... ..+....+++|+|+|...+ +++|... ...
T Consensus 162 e~~~~l~~~lG-lsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (656)
T PRK12898 162 ELMRPLYEALG-LTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQL 238 (656)
T ss_pred HHHHHHHhhcC-CEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhh
Confidence 99999988776 455666666543 3444556789999999876 4444321 112
Q ss_pred ccCCccEEEEechhHhhhcc------------------hhHHHHHHHHHhcCCC-CC-----------------------
Q 013392 166 LHTNLRWIIFDEADRILELG------------------FGKEIEEILDILGSRN-IG----------------------- 203 (444)
Q Consensus 166 ~~~~~~lvV~DE~h~~~~~~------------------~~~~~~~~~~~l~~~~-~~----------------------- 203 (444)
....+.++|+||+|+++-+. .......+...+.... +.
T Consensus 239 v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~ 318 (656)
T PRK12898 239 LLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAE 318 (656)
T ss_pred cccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhC
Confidence 34568899999999852211 1112222222222110 00
Q ss_pred -----C---------------------------------------CC-----CCC-------------------------
Q 013392 204 -----S---------------------------------------IG-----EGN------------------------- 209 (444)
Q Consensus 204 -----~---------------------------------------~~-----~~~------------------------- 209 (444)
. ++ ..+
T Consensus 319 ~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~ 398 (656)
T PRK12898 319 SLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLAR 398 (656)
T ss_pred cchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeee
Confidence 0 00 000
Q ss_pred ----cccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCcccc
Q 013392 210 ----EVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFK 285 (444)
Q Consensus 210 ----~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (444)
..-.....+.+||||.......+...+..++..+......
T Consensus 399 It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~------------------------------------ 442 (656)
T PRK12898 399 ITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS------------------------------------ 442 (656)
T ss_pred ehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc------------------------------------
Confidence 0111122555667776665555666555555444322221
Q ss_pred ccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEE
Q 013392 286 LPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFR 365 (444)
Q Consensus 286 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (444)
.....+.++.++...|...+...+.... ..+.++||||++++.++.+.+.|... ++++..
T Consensus 443 -~r~~~~~~v~~t~~~K~~aL~~~i~~~~--~~~~pvLIft~t~~~se~L~~~L~~~-----------------gi~~~~ 502 (656)
T PRK12898 443 -QRRHLPDEVFLTAAAKWAAVAARVRELH--AQGRPVLVGTRSVAASERLSALLREA-----------------GLPHQV 502 (656)
T ss_pred -cceecCCEEEeCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-----------------CCCEEE
Confidence 1223344556677788899998887753 34578999999999999999999987 899999
Q ss_pred EecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCC---CCc-----EEEEccCCCCcchhhhcccccccCCCccccc
Q 013392 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP---KVK-----CIIQYDSAGEATEYVHRYLKHLPVGNFYFNI 437 (444)
Q Consensus 366 ~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~ 437 (444)
+||+++..+ ..+..+..+...|+|||+++++|+|++ ++. +||+++.|.|...|.||+||+||.|++|.++
T Consensus 503 Lhg~~~~rE--~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~ 580 (656)
T PRK12898 503 LNAKQDAEE--AAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE 580 (656)
T ss_pred eeCCcHHHH--HHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE
Confidence 999866544 444455555568999999999999999 665 9999999999999999999999999999999
Q ss_pred ceEE
Q 013392 438 PLIV 441 (444)
Q Consensus 438 ~~i~ 441 (444)
.|+.
T Consensus 581 ~~is 584 (656)
T PRK12898 581 AILS 584 (656)
T ss_pred EEec
Confidence 8875
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.3e-35 Score=273.93 Aligned_cols=294 Identities=20% Similarity=0.214 Sum_probs=198.0
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcch---
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR--- 134 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~--- 134 (444)
++++.+|||+|||.+++++++..+.. ..+.++++++|+++|+.|+.+.+..+++.. ....+++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~----~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGSN----LGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCcc----cEEeeccHHHHHH
Confidence 47999999999999999999987644 345679999999999999999999986531 1112211110
Q ss_pred ---------hHHHHHh------cCCCcEEEeCchHHHHHHhc-cCcc--cc--CCccEEEEechhHhhhcchhHHHHHHH
Q 013392 135 ---------SKEKARL------RKGISILVATPGRLLDHLKH-TSSF--LH--TNLRWIIFDEADRILELGFGKEIEEIL 194 (444)
Q Consensus 135 ---------~~~~~~~------~~~~~iii~T~~~l~~~l~~-~~~~--~~--~~~~lvV~DE~h~~~~~~~~~~~~~~~ 194 (444)
....... .-..+|+|+||+.+...+.. .... .+ -..++||+||+|.+.+..... +..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l 148 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVL 148 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHH
Confidence 0001111 11357999999999887664 1111 11 123799999999887653333 55555
Q ss_pred HHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCC
Q 013392 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPS 274 (444)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (444)
..+... ..|++++|||++.....+.......+......... .
T Consensus 149 ~~l~~~--------------~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~-----~------------------- 190 (358)
T TIGR01587 149 EVLKDN--------------DVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE-----E------------------- 190 (358)
T ss_pred HHHHHc--------------CCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc-----c-------------------
Confidence 555422 67899999999866555544321111000000000 0
Q ss_pred ccccccCccccccccceeeEEE--cCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchH
Q 013392 275 TTMRSTTEDFKLPAQLVQRYVK--VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDM 352 (444)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~ 352 (444)
.....+.+.. .....+...+..+++.. ..+.++||||++++.++.+++.|++...
T Consensus 191 ------------~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~lVf~~t~~~~~~~~~~L~~~~~-------- 247 (358)
T TIGR01587 191 ------------RRFERHRFIKIESDKVGEISSLERLLEFI---KKGGKIAIIVNTVDRAQEFYQQLKENAP-------- 247 (358)
T ss_pred ------------cccccccceeeccccccCHHHHHHHHHHh---hCCCeEEEEECCHHHHHHHHHHHHhhcC--------
Confidence 0000111111 11224455555555543 3467999999999999999999987621
Q ss_pred HHHHhhhccceEEEecCCCHHHHHH----HHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccc
Q 013392 353 ELKQLFLRCKTFRLHGNMKQEDRRT----TFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHL 428 (444)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~r~~----~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~ 428 (444)
+..+..+||++++.+|.+ +++.|++|+.++||||+++++|+|++ ++.||++..| ...|+||+||+|
T Consensus 248 -------~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~g 317 (358)
T TIGR01587 248 -------EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLH 317 (358)
T ss_pred -------CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhcccc
Confidence 235899999999999876 48899999999999999999999995 8888888665 789999999999
Q ss_pred cCCCcc
Q 013392 429 PVGNFY 434 (444)
Q Consensus 429 R~g~~g 434 (444)
|.|+++
T Consensus 318 R~g~~~ 323 (358)
T TIGR01587 318 RYGRKN 323 (358)
T ss_pred CCCCCC
Confidence 998754
No 66
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.3e-35 Score=288.35 Aligned_cols=307 Identities=18% Similarity=0.204 Sum_probs=216.3
Q ss_pred HHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCcee
Q 013392 45 VQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIV 124 (444)
Q Consensus 45 ~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~ 124 (444)
+-.+.++.+.++++++++++||||||..+.+++++... .+.+++++.|++.++.|.++.+.+..+......
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~ 76 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQT 76 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE
Confidence 34567777778899999999999999999998887642 234799999999999999999875543221122
Q ss_pred eEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhH-hhhcchhH-HHHHHHHHhcCCCC
Q 013392 125 PGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR-ILELGFGK-EIEEILDILGSRNI 202 (444)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~-~~~~~~~~-~~~~~~~~l~~~~~ 202 (444)
.+....+.. ....+.+|+|+|+..|.+.+.. ...++++++||+||+|+ .++..+.- .+..+...++.
T Consensus 77 VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~--- 145 (819)
T TIGR01970 77 VGYRVRGEN------KVSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLRE--- 145 (819)
T ss_pred EEEEEcccc------ccCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCC---
Confidence 222222211 2234578999999999998875 34578999999999995 55543332 22344444443
Q ss_pred CCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCc
Q 013392 203 GSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTE 282 (444)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (444)
..|+++||||++... + ..++.++..+.......
T Consensus 146 ------------dlqlIlmSATl~~~~--l-~~~l~~~~vI~~~gr~~-------------------------------- 178 (819)
T TIGR01970 146 ------------DLKILAMSATLDGER--L-SSLLPDAPVVESEGRSF-------------------------------- 178 (819)
T ss_pred ------------CceEEEEeCCCCHHH--H-HHHcCCCcEEEecCcce--------------------------------
Confidence 789999999998643 3 33444433332221110
Q ss_pred cccccccceeeEEEcCCCCcHH-HHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhcc
Q 013392 283 DFKLPAQLVQRYVKVPCGSRLA-VLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRC 361 (444)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~k~~-~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 361 (444)
.+..++.......+.. .+...+..... ...+.+|||+++..+++.+++.|.+... .++
T Consensus 179 ------pVe~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~eI~~l~~~L~~~~~--------------~~~ 237 (819)
T TIGR01970 179 ------PVEIRYLPLRGDQRLEDAVSRAVEHALA-SETGSILVFLPGQAEIRRVQEQLAERLD--------------SDV 237 (819)
T ss_pred ------eeeeEEeecchhhhHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHhhcC--------------CCc
Confidence 0122222222222221 11122222221 2357899999999999999999976311 167
Q ss_pred ceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCc------------------chhhhc
Q 013392 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA------------------TEYVHR 423 (444)
Q Consensus 362 ~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~------------------~~~~Q~ 423 (444)
.+..+||+++.++|.++++.|.+|..+|||||+++++|+|+|++++||+++.++.. .++.||
T Consensus 238 ~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR 317 (819)
T TIGR01970 238 LICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQR 317 (819)
T ss_pred EEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999987532 348999
Q ss_pred ccccccCCCcccccceE
Q 013392 424 YLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 424 ~GR~~R~g~~g~~~~~i 440 (444)
.||+||. ++|.||.+.
T Consensus 318 ~GRAGR~-~~G~cyrL~ 333 (819)
T TIGR01970 318 AGRAGRL-EPGVCYRLW 333 (819)
T ss_pred hhhcCCC-CCCEEEEeC
Confidence 9999998 899999875
No 67
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.2e-34 Score=302.45 Aligned_cols=332 Identities=20% Similarity=0.218 Sum_probs=230.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHH
Q 013392 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~ 106 (444)
+++.+.+.+.+||. |+++|+++++.+++|+++++.+|||+|||+.++++++.... ++.++|||+||++|+
T Consensus 66 ~~~~~~f~~~~G~~-pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---------~g~~aLVl~PTreLa 135 (1638)
T PRK14701 66 EEFEEFFEKITGFE-FWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---------KGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHHhhCCC-CCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---------cCCeEEEEECHHHHH
Confidence 45667776668995 99999999999999999999999999999965555444321 356799999999999
Q ss_pred HHHHHHHHHHhcccCc-eeeEEEeCCcchhHHH---HHhc-CCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHh
Q 013392 107 LQVYEILHKLLHRFHW-IVPGYVMGGENRSKEK---ARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI 181 (444)
Q Consensus 107 ~q~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~ 181 (444)
.|+.+.++.++...+. .....++++....... ..+. +.++|+|+||+.|...+... . ...++++|+||||++
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~-~~~i~~iVVDEAD~m 212 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--K-HLKFDFIFVDDVDAF 212 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--h-hCCCCEEEEECceec
Confidence 9999999998876542 3445555665554432 2333 35899999999988766531 1 257899999999999
Q ss_pred hhc-----------chhHHHHH-HHHHhcCCCCCCCC----------CCCccccccee-EEEEEeecchhhHHHHHhhcC
Q 013392 182 LEL-----------GFGKEIEE-ILDILGSRNIGSIG----------EGNEVSNVKRQ-NLLLSATLNEKVNHLAKISLE 238 (444)
Q Consensus 182 ~~~-----------~~~~~~~~-~~~~l~~~~~~~~~----------~~~~~~~~~~~-~i~~Sat~~~~~~~~~~~~~~ 238 (444)
+++ +|...... ++..+......... ..........| .+++|||.++..... . .+.
T Consensus 213 l~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~-~-l~~ 290 (1638)
T PRK14701 213 LKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRV-K-LYR 290 (1638)
T ss_pred cccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHH-H-Hhh
Confidence 762 45444432 11111100000000 00000011334 677999988642222 2 223
Q ss_pred CCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhccccc
Q 013392 239 TPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEV 318 (444)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 318 (444)
.+..+.+.... ....++.+.++......+ ..+..+++..
T Consensus 291 ~~l~f~v~~~~-----------------------------------~~lr~i~~~yi~~~~~~k-~~L~~ll~~~----- 329 (1638)
T PRK14701 291 ELLGFEVGSGR-----------------------------------SALRNIVDVYLNPEKIIK-EHVRELLKKL----- 329 (1638)
T ss_pred cCeEEEecCCC-----------------------------------CCCCCcEEEEEECCHHHH-HHHHHHHHhC-----
Confidence 44333322211 122445666665544434 4566666543
Q ss_pred CceEEEEecccch---hhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEe--
Q 013392 319 SQKLVVFFSTCDA---VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST-- 393 (444)
Q Consensus 319 ~~~~ivf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t-- 393 (444)
+..+||||++++. ++.+++.|.+. |+++..+|++ |...+++|++|+.+|||||
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~-----------------Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s 387 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLED-----------------GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVAT 387 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHC-----------------CCeEEEecch-----HHHHHHHHHcCCCCEEEEecC
Confidence 3578999999886 48899999887 8999999984 8899999999999999999
Q ss_pred --cccccCCCCCC-CcEEEEccCCC---Ccchhhhcc-------------cccccCCCcccc
Q 013392 394 --DVAARGLDFPK-VKCIIQYDSAG---EATEYVHRY-------------LKHLPVGNFYFN 436 (444)
Q Consensus 394 --~~~~~G~di~~-~~~vi~~~~~~---s~~~~~Q~~-------------GR~~R~g~~g~~ 436 (444)
+.+++|+|+|+ +++|||++.|. +...|.|-. ||++|.|..+-+
T Consensus 388 ~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 388 YYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred CCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchh
Confidence 47899999998 99999999999 888777765 999999877655
No 68
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=6.9e-35 Score=289.25 Aligned_cols=307 Identities=18% Similarity=0.214 Sum_probs=214.3
Q ss_pred HHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCcee
Q 013392 45 VQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIV 124 (444)
Q Consensus 45 ~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~ 124 (444)
+=.+.++++.++++++++++||||||.++.+++++... ...+++++.|++.++.|.++.+.+..+......
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~---------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG---------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC---------cCCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 33467777778899999999999999999888876431 124799999999999999999876543322223
Q ss_pred eEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHh-hhcch-hHHHHHHHHHhcCCCC
Q 013392 125 PGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI-LELGF-GKEIEEILDILGSRNI 202 (444)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~-~~~~~-~~~~~~~~~~l~~~~~ 202 (444)
.+....+... ...+.+|+|+||..|.+.+.. ...++++++||+||+|+. ++... ...+..+...++.
T Consensus 80 VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~--- 148 (812)
T PRK11664 80 VGYRMRAESK------VGPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRD--- 148 (812)
T ss_pred EEEEecCccc------cCCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCc---
Confidence 3333332221 123457999999999998875 345789999999999972 22211 1223334444443
Q ss_pred CCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCc
Q 013392 203 GSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTE 282 (444)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (444)
..|+++||||++.. .+. .++.++..+.......
T Consensus 149 ------------~lqlilmSATl~~~--~l~-~~~~~~~~I~~~gr~~-------------------------------- 181 (812)
T PRK11664 149 ------------DLKLLIMSATLDND--RLQ-QLLPDAPVIVSEGRSF-------------------------------- 181 (812)
T ss_pred ------------cceEEEEecCCCHH--HHH-HhcCCCCEEEecCccc--------------------------------
Confidence 78999999999864 232 3344333332211110
Q ss_pred cccccccceeeEEEcCCCCcHH-HHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhcc
Q 013392 283 DFKLPAQLVQRYVKVPCGSRLA-VLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRC 361 (444)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~k~~-~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 361 (444)
.+.+.|...+...+.. .+...+..... ...+.+|||+++..+++.+.+.|.+... .++
T Consensus 182 ------pV~~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~~L~~~~~--------------~~~ 240 (812)
T PRK11664 182 ------PVERRYQPLPAHQRFDEAVARATAELLR-QESGSLLLFLPGVGEIQRVQEQLASRVA--------------SDV 240 (812)
T ss_pred ------cceEEeccCchhhhHHHHHHHHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHhcc--------------CCc
Confidence 0122222222222222 12222333221 2357999999999999999999986311 167
Q ss_pred ceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCc------------------chhhhc
Q 013392 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA------------------TEYVHR 423 (444)
Q Consensus 362 ~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~------------------~~~~Q~ 423 (444)
.+..+||+++.++|.+.++.|.+|..+|||||+++++|+|+|++++||+++.++.. .+|.||
T Consensus 241 ~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR 320 (812)
T PRK11664 241 LLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQR 320 (812)
T ss_pred eEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhh
Confidence 88999999999999999999999999999999999999999999999998876532 479999
Q ss_pred ccccccCCCcccccceE
Q 013392 424 YLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 424 ~GR~~R~g~~g~~~~~i 440 (444)
.||+||. ++|.||.+.
T Consensus 321 ~GRaGR~-~~G~cyrL~ 336 (812)
T PRK11664 321 AGRAGRL-EPGICLHLY 336 (812)
T ss_pred ccccCCC-CCcEEEEec
Confidence 9999998 699998775
No 69
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-35 Score=278.04 Aligned_cols=332 Identities=23% Similarity=0.255 Sum_probs=213.7
Q ss_pred CCCHHHHhHHHhHhc----CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVILS----GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~----~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.||+||.+|++++.+ ++..++++|||+|||++++.++...... +|||||+..|+.||.+.+.++
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~------------~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRS------------TLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCC------------EEEEECcHHHHHHHHHHHHHh
Confidence 399999999999998 8899999999999999988876664322 999999999999999888877
Q ss_pred hcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHH
Q 013392 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196 (444)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~ 196 (444)
+... ...+.+.++...... ..|.|+|++++.... ....+....+++|||||||++.+..+... ...
T Consensus 104 ~~~~--~~~g~~~~~~~~~~~-------~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~~~----~~~ 169 (442)
T COG1061 104 LLLN--DEIGIYGGGEKELEP-------AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYRRI----LEL 169 (442)
T ss_pred cCCc--cccceecCceeccCC-------CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHHHH----HHh
Confidence 6532 122233322222111 359999999998752 11333444799999999999866533333 333
Q ss_pred hcCCCCCCCCCCCccccccee-EEEEEeecchhhHHHHHhhc--CCCeEEcccCcCCCCCcccccccCcccccc---ccc
Q 013392 197 LGSRNIGSIGEGNEVSNVKRQ-NLLLSATLNEKVNHLAKISL--ETPVLIGLDEKKLPEDKSHVRFGSLESDVK---EEV 270 (444)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~-~i~~Sat~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 270 (444)
+. ... ++++||||+........... ..+..+..............++........ +..
T Consensus 170 ~~----------------~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~ 233 (442)
T COG1061 170 LS----------------AAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEE 233 (442)
T ss_pred hh----------------cccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHH
Confidence 32 223 89999998743312222111 113333333222211111111111110000 000
Q ss_pred cCCCccccccCc----cccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCC
Q 013392 271 EHPSTTMRSTTE----DFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSP 346 (444)
Q Consensus 271 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~ 346 (444)
............ ...................+...+...+.... .+.+++||+.+..++..+...+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~lif~~~~~~a~~i~~~~~~~---- 306 (442)
T COG1061 234 REYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA---RGDKTLIFASDVEHAYEIAKLFLAP---- 306 (442)
T ss_pred HHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc---CCCcEEEEeccHHHHHHHHHHhcCC----
Confidence 000000000000 00000000001112233445555555554431 5789999999999999999999775
Q ss_pred CCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccc
Q 013392 347 HSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLK 426 (444)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR 426 (444)
+. +..+++..+..+|..+++.|+.|..++|+++.++.+|+|+|+++++|..+++.|...|+||+||
T Consensus 307 -------------~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR 372 (442)
T COG1061 307 -------------GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGR 372 (442)
T ss_pred -------------Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhh
Confidence 44 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-CCCccc
Q 013392 427 HLP-VGNFYF 435 (444)
Q Consensus 427 ~~R-~g~~g~ 435 (444)
+.| ...++.
T Consensus 373 ~LR~~~~k~~ 382 (442)
T COG1061 373 GLRPAEGKED 382 (442)
T ss_pred hccCCCCCCc
Confidence 999 444444
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2e-34 Score=277.22 Aligned_cols=332 Identities=14% Similarity=0.085 Sum_probs=221.5
Q ss_pred CCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccC
Q 013392 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~ 121 (444)
++|+|.+++..+..+++.+++++||+|||+++++|++..... +..++|++|++.|+.|+++++..+...++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 555555555555555557999999999999999998776654 34599999999999999999999988777
Q ss_pred ceeeEEEeCCc--chhHHHHHhcCCCcEEEeCchHH-HHHHhc-----cCccccCCccEEEEechhHhhhcc--------
Q 013392 122 WIVPGYVMGGE--NRSKEKARLRKGISILVATPGRL-LDHLKH-----TSSFLHTNLRWIIFDEADRILELG-------- 185 (444)
Q Consensus 122 ~~~~~~~~~~~--~~~~~~~~~~~~~~iii~T~~~l-~~~l~~-----~~~~~~~~~~lvV~DE~h~~~~~~-------- 185 (444)
..+.....++. ...........+++|+++||..| .+++.. .....+..+.++|+||||+++-+.
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 55444333311 12223344446799999999999 555532 123456789999999999974432
Q ss_pred --------hhHHHHHHHHHhcCCC-CCCCCCC-------------------Cc---------------------------
Q 013392 186 --------FGKEIEEILDILGSRN-IGSIGEG-------------------NE--------------------------- 210 (444)
Q Consensus 186 --------~~~~~~~~~~~l~~~~-~~~~~~~-------------------~~--------------------------- 210 (444)
.......+...+.... +...... ..
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 1223333444433210 0000000 00
Q ss_pred -------------------------------------------------------ccccceeEEEEEeecchhhHHHHHh
Q 013392 211 -------------------------------------------------------VSNVKRQNLLLSATLNEKVNHLAKI 235 (444)
Q Consensus 211 -------------------------------------------------------~~~~~~~~i~~Sat~~~~~~~~~~~ 235 (444)
.-.....+.++|+|......++...
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 0000012222222222111111111
Q ss_pred hcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcc
Q 013392 236 SLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFD 315 (444)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 315 (444)
+ ...+.....+......-....+......|...+...+.+..
T Consensus 380 Y-------------------------------------~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~- 421 (762)
T TIGR03714 380 Y-------------------------------------SLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYH- 421 (762)
T ss_pred h-------------------------------------CCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHh-
Confidence 1 11111111111111112222445566778888888887753
Q ss_pred cccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecc
Q 013392 316 TEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV 395 (444)
Q Consensus 316 ~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~ 395 (444)
..+.++||||++++.++.+...|... ++++..+|+++.+.++..+.++++.| .|+|||++
T Consensus 422 -~~~~pvLIft~s~~~se~ls~~L~~~-----------------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdm 481 (762)
T TIGR03714 422 -ETGQPVLLITGSVEMSEIYSELLLRE-----------------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSM 481 (762)
T ss_pred -hCCCCEEEEECcHHHHHHHHHHHHHC-----------------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccc
Confidence 45789999999999999999999987 88999999999998888888777766 79999999
Q ss_pred cccCCCCC---------CCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 396 AARGLDFP---------KVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 396 ~~~G~di~---------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+++|+|+| .+.+|+++++|....+ .||+||+||.|++|.++.|+.
T Consensus 482 AgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is 535 (762)
T TIGR03714 482 AGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVS 535 (762)
T ss_pred cccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEc
Confidence 99999999 9999999999987766 999999999999999998875
No 71
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.7e-34 Score=276.79 Aligned_cols=340 Identities=15% Similarity=0.130 Sum_probs=232.6
Q ss_pred HHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHH
Q 013392 30 CDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (444)
Q Consensus 30 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 109 (444)
.+.....+|.. |+++|..+...+..|+ +.++.||+|||+++++|++..... +..|++++|++.|+.|.
T Consensus 68 rea~~R~~g~~-p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---------G~~v~VvTpt~~LA~qd 135 (790)
T PRK09200 68 REAAKRVLGMR-PYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---------GKGVHLITVNDYLAKRD 135 (790)
T ss_pred HHHHHHHhCCC-CchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---------CCCeEEEeCCHHHHHHH
Confidence 34445556885 9999999998887776 999999999999999999876654 66799999999999999
Q ss_pred HHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHH-HHHHhcc-----CccccCCccEEEEechhHhhh
Q 013392 110 YEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRILE 183 (444)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~-----~~~~~~~~~lvV~DE~h~~~~ 183 (444)
++++..++..++ .....+.++......++ ...+++|+++||..+ ++++... ....+..+.++|+||+|+++-
T Consensus 136 ~e~~~~l~~~lG-l~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLi 213 (790)
T PRK09200 136 AEEMGQVYEFLG-LTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILL 213 (790)
T ss_pred HHHHHHHHhhcC-CeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEecccccee
Confidence 999999998877 44455565555333333 345689999999888 4544431 123557889999999998633
Q ss_pred cc----------------hhHHHHHHHHHhcCCC-CCCCC----------------------CCCc--------------
Q 013392 184 LG----------------FGKEIEEILDILGSRN-IGSIG----------------------EGNE-------------- 210 (444)
Q Consensus 184 ~~----------------~~~~~~~~~~~l~~~~-~~~~~----------------------~~~~-------------- 210 (444)
+. ....+..+...+.... +..-. ..+.
T Consensus 214 Dea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 293 (790)
T PRK09200 214 DEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILAL 293 (790)
T ss_pred ccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHH
Confidence 21 2233334444333210 00000 0000
Q ss_pred -----------------------------------------------------------------ccccceeEEEEEeec
Q 013392 211 -----------------------------------------------------------------VSNVKRQNLLLSATL 225 (444)
Q Consensus 211 -----------------------------------------------------------------~~~~~~~~i~~Sat~ 225 (444)
.-.....+.++|+|.
T Consensus 294 ~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa 373 (790)
T PRK09200 294 RAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTA 373 (790)
T ss_pred HHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCC
Confidence 000000122222222
Q ss_pred chhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHH
Q 013392 226 NEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAV 305 (444)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 305 (444)
......+...+ ...+.....+......-..-.+......|...
T Consensus 374 ~t~~~e~~~~Y-------------------------------------~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~a 416 (790)
T PRK09200 374 KTEEKEFFEVY-------------------------------------NMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKA 416 (790)
T ss_pred hHHHHHHHHHh-------------------------------------CCcEEECCCCCCcccccCCCeEEcCHHHHHHH
Confidence 21111111111 00001111111111111122344556778888
Q ss_pred HHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcC
Q 013392 306 LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE 385 (444)
Q Consensus 306 l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 385 (444)
+...+.... ..+.++||||++++.++.+...|.+. ++++..+||++.+.++..+...++.|
T Consensus 417 l~~~i~~~~--~~~~pvLIf~~t~~~se~l~~~L~~~-----------------gi~~~~L~~~~~~~e~~~i~~ag~~g 477 (790)
T PRK09200 417 VIEEVKERH--ETGRPVLIGTGSIEQSETFSKLLDEA-----------------GIPHNLLNAKNAAKEAQIIAEAGQKG 477 (790)
T ss_pred HHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-----------------CCCEEEecCCccHHHHHHHHHcCCCC
Confidence 888887642 35789999999999999999999987 89999999999988888888777766
Q ss_pred CCcEEEEecccccCCCC---CCCc-----EEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 386 KKALLLSTDVAARGLDF---PKVK-----CIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 386 ~~~iLi~t~~~~~G~di---~~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+|+|||+++++|+|+ |.+. +||+++.|.|.+.|.||+||+||.|++|.++.|+.
T Consensus 478 --~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is 539 (790)
T PRK09200 478 --AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFIS 539 (790)
T ss_pred --eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEc
Confidence 799999999999999 6898 99999999999999999999999999999998875
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=5.3e-33 Score=254.72 Aligned_cols=314 Identities=18% Similarity=0.164 Sum_probs=195.7
Q ss_pred HHHhHHHhHhcCCc--EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccC-
Q 013392 45 VQAQAIPVILSGRH--VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH- 121 (444)
Q Consensus 45 ~Q~~~~~~~~~~~~--~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~- 121 (444)
+|.++++++.++++ +++++|||+|||.+++++++.. ..++++++|+++|++|+.+.+.+++....
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 69999999998864 7889999999999999888751 23489999999999999999999875432
Q ss_pred --ceeeEEEeCCcchhH---H-----------------HH-HhcCCCcEEEeCchHHHHHHhcc---Cc----cccCCcc
Q 013392 122 --WIVPGYVMGGENRSK---E-----------------KA-RLRKGISILVATPGRLLDHLKHT---SS----FLHTNLR 171 (444)
Q Consensus 122 --~~~~~~~~~~~~~~~---~-----------------~~-~~~~~~~iii~T~~~l~~~l~~~---~~----~~~~~~~ 171 (444)
......+. |....+ . +. ...+.+.|+++||+.+..++... +. ..+.+++
T Consensus 69 ~~~~~v~~~~-g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~ 147 (357)
T TIGR03158 69 ERDVNLLHVS-KATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFS 147 (357)
T ss_pred CCCceEEEec-CCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCC
Confidence 12222222 221111 0 01 11235788999999987665431 11 1246899
Q ss_pred EEEEechhHhhhcchhH-----HHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhh--cCCCeEEc
Q 013392 172 WIIFDEADRILELGFGK-----EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKIS--LETPVLIG 244 (444)
Q Consensus 172 lvV~DE~h~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~--~~~~~~~~ 244 (444)
+|||||+|.+....... ....+...... ..+++++|||+++......... .+.+....
T Consensus 148 ~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~---------------~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v 212 (357)
T TIGR03158 148 TVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFEC---------------RRKFVFLSATPDPALILRLQNAKQAGVKIAPI 212 (357)
T ss_pred EEEEecccccCcccchhhhhhhHHHHHHHhhhc---------------CCcEEEEecCCCHHHHHHHHhccccCceeeee
Confidence 99999999754332111 12222222222 4689999999988655544432 23332221
Q ss_pred ccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHH---HHHHhhcccccCce
Q 013392 245 LDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLL---SILKHLFDTEVSQK 321 (444)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~---~~l~~~~~~~~~~~ 321 (444)
....+...+. .+.. ..... .........+...+.. ....+...+. ..+.+.+....+.+
T Consensus 213 ~g~~~~~~~~------------~~~~----~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k 274 (357)
T TIGR03158 213 DGEKYQFPDN------------PELE----ADNKT-QSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGER 274 (357)
T ss_pred cCcccccCCC------------hhhh----ccccc-cccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCe
Confidence 1111100000 0000 00000 0000011233333333 2333333333 33333333345679
Q ss_pred EEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCC
Q 013392 322 LVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLD 401 (444)
Q Consensus 322 ~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~d 401 (444)
+||||++++.++.+++.|++... +..+..+||.+++.+|.+. ++.+|||||+++++|+|
T Consensus 275 ~LIf~nt~~~~~~l~~~L~~~~~---------------~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiD 333 (357)
T TIGR03158 275 GAIILDSLDEVNRLSDLLQQQGL---------------GDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVD 333 (357)
T ss_pred EEEEECCHHHHHHHHHHHhhhCC---------------CceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccC
Confidence 99999999999999999987511 4567889999999988654 36899999999999999
Q ss_pred CCCCcEEEEccCCCCcchhhhcccccc
Q 013392 402 FPKVKCIIQYDSAGEATEYVHRYLKHL 428 (444)
Q Consensus 402 i~~~~~vi~~~~~~s~~~~~Q~~GR~~ 428 (444)
+|.. .|| ++ |.+...|+||+||+|
T Consensus 334 i~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 334 FKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9876 555 44 889999999999997
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=5.4e-33 Score=265.59 Aligned_cols=340 Identities=16% Similarity=0.135 Sum_probs=231.4
Q ss_pred HHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHH
Q 013392 29 LCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (444)
Q Consensus 29 i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q 108 (444)
+.+.....+|.. |++.|..+...+..|+ +..++||+|||+++++|++..... +..|++++||..|+.|
T Consensus 45 vrEa~~R~lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~q 112 (745)
T TIGR00963 45 VREASKRVLGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQR 112 (745)
T ss_pred HHHHHHHHhCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHH
Confidence 344455556886 9999999988877776 999999999999999999655544 3459999999999999
Q ss_pred HHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHH-HHHHhccC-----ccccCCccEEEEechhHhh
Q 013392 109 VYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTS-----SFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~~-----~~~~~~~~lvV~DE~h~~~ 182 (444)
.++++.+++..++ +....+.++...... .....++|+|+||..| ++++...- ...+..++++|+||+|+++
T Consensus 113 dae~~~~l~~~LG-Lsv~~i~g~~~~~~r--~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 113 DAEWMGQVYRFLG-LSVGLILSGMSPEER--REAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred HHHHHHHHhccCC-CeEEEEeCCCCHHHH--HHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 9999999998877 445566666554333 2333579999999999 88776531 3456789999999999975
Q ss_pred hcc----------------hhHHHHHHHHHhcCCC-CCCCCCC-------------------Cc----------------
Q 013392 183 ELG----------------FGKEIEEILDILGSRN-IGSIGEG-------------------NE---------------- 210 (444)
Q Consensus 183 ~~~----------------~~~~~~~~~~~l~~~~-~~~~~~~-------------------~~---------------- 210 (444)
-+. .......+.+.+.... +..-... ..
T Consensus 190 IDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~A 269 (745)
T TIGR00963 190 IDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNA 269 (745)
T ss_pred HHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHH
Confidence 521 1112222333332110 0000000 00
Q ss_pred ------------------------------------------------------------------ccccceeEEEEEee
Q 013392 211 ------------------------------------------------------------------VSNVKRQNLLLSAT 224 (444)
Q Consensus 211 ------------------------------------------------------------------~~~~~~~~i~~Sat 224 (444)
.-.....+.++|+|
T Consensus 270 l~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGT 349 (745)
T TIGR00963 270 LKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGT 349 (745)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCC
Confidence 00000011222222
Q ss_pred cchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHH
Q 013392 225 LNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLA 304 (444)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 304 (444)
.......+...+. ..+.....+...........+......|..
T Consensus 350 a~te~~E~~~iY~-------------------------------------l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ 392 (745)
T TIGR00963 350 AKTEEEEFEKIYN-------------------------------------LEVVVVPTNRPVIRKDLSDLVYKTEEEKWK 392 (745)
T ss_pred cHHHHHHHHHHhC-------------------------------------CCEEEeCCCCCeeeeeCCCeEEcCHHHHHH
Confidence 2111111111110 001111111111111112233344556777
Q ss_pred HHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhc
Q 013392 305 VLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT 384 (444)
Q Consensus 305 ~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 384 (444)
.+...+.+.. ..+.++||||+++..++.+.+.|.+. +++...+|++ +.+|+..+..|..
T Consensus 393 ai~~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~~-----------------gi~~~~Lna~--q~~rEa~ii~~ag 451 (745)
T TIGR00963 393 AVVDEIKERH--AKGQPVLVGTTSVEKSELLSNLLKER-----------------GIPHNVLNAK--NHEREAEIIAQAG 451 (745)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHc-----------------CCCeEEeeCC--hHHHHHHHHHhcC
Confidence 7777776653 56889999999999999999999987 8888999998 7788889999999
Q ss_pred CCCcEEEEecccccCCCCCC-------CcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 385 EKKALLLSTDVAARGLDFPK-------VKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 385 g~~~iLi~t~~~~~G~di~~-------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+...|+|||+++++|+|++. .-+||+++.|.|.+.|.|+.||+||.|++|.+..|+.
T Consensus 452 ~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls 515 (745)
T TIGR00963 452 RKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLS 515 (745)
T ss_pred CCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEe
Confidence 99999999999999999998 5599999999999999999999999999999999875
No 74
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.5e-32 Score=255.21 Aligned_cols=331 Identities=23% Similarity=0.275 Sum_probs=237.9
Q ss_pred cCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcC------CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 23 LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 23 ~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
++....+.+.+.+..+|+ |+..|++++..+... .+=+++|+.|||||++++++++..+.. |.++
T Consensus 245 ~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---------G~Q~ 314 (677)
T COG1200 245 LPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---------GYQA 314 (677)
T ss_pred CCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---------CCee
Confidence 445566777777888998 999999999998843 234999999999999999999998855 7889
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHH---HHh-cCCCcEEEeCchHHHHHHhccCccccCCccE
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARL-RKGISILVATPGRLLDHLKHTSSFLHTNLRW 172 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iii~T~~~l~~~l~~~~~~~~~~~~l 172 (444)
.+++||.-|+.|+++.+.+++..++ +....++++....... ..+ .+..+|+|+|+.-+.+ ...+.++++
T Consensus 315 ALMAPTEILA~QH~~~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd------~V~F~~LgL 387 (677)
T COG1200 315 ALMAPTEILAEQHYESLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD------KVEFHNLGL 387 (677)
T ss_pred EEeccHHHHHHHHHHHHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc------ceeecceeE
Confidence 9999999999999999999999877 4455565554433322 223 4459999999766654 334579999
Q ss_pred EEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCC
Q 013392 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPE 252 (444)
Q Consensus 173 vV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (444)
+|+||-|+ |+-.....+...... .+..+.|||||=++.-.+.....-+-..+
T Consensus 388 VIiDEQHR-----FGV~QR~~L~~KG~~--------------~Ph~LvMTATPIPRTLAlt~fgDldvS~I--------- 439 (677)
T COG1200 388 VIIDEQHR-----FGVHQRLALREKGEQ--------------NPHVLVMTATPIPRTLALTAFGDLDVSII--------- 439 (677)
T ss_pred EEEecccc-----ccHHHHHHHHHhCCC--------------CCcEEEEeCCCchHHHHHHHhccccchhh---------
Confidence 99999999 666666666665541 35678899997665444433222121111
Q ss_pred CcccccccCccccccccccCCCccccccCcccccccc-ceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccch
Q 013392 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQ-LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (444)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~ 331 (444)
+.. |.. ..-....++...+-+.+..+-+++ ..+..+-+.|+-+++
T Consensus 440 ---------------dEl----------------P~GRkpI~T~~i~~~~~~~v~e~i~~ei---~~GrQaY~VcPLIeE 485 (677)
T COG1200 440 ---------------DEL----------------PPGRKPITTVVIPHERRPEVYERIREEI---AKGRQAYVVCPLIEE 485 (677)
T ss_pred ---------------ccC----------------CCCCCceEEEEeccccHHHHHHHHHHHH---HcCCEEEEEeccccc
Confidence 111 111 111122233333334444444444 568899999998887
Q ss_pred hhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEc
Q 013392 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (444)
Q Consensus 332 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~ 411 (444)
.+.+.-.- ...........++++++..+||.|+..++.+++++|++|+.+|||||.+.+.|+|+|+++++|+.
T Consensus 486 SE~l~l~~-------a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe 558 (677)
T COG1200 486 SEKLELQA-------AEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIE 558 (677)
T ss_pred cccchhhh-------HHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEe
Confidence 66333000 00001122344678999999999999999999999999999999999999999999999999998
Q ss_pred cCCC-CcchhhhcccccccCCCcccccce
Q 013392 412 DSAG-EATEYVHRYLKHLPVGNFYFNIPL 439 (444)
Q Consensus 412 ~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~ 439 (444)
+.-+ -..++.|-.||+||.+..+.|+++
T Consensus 559 ~AERFGLaQLHQLRGRVGRG~~qSyC~Ll 587 (677)
T COG1200 559 NAERFGLAQLHQLRGRVGRGDLQSYCVLL 587 (677)
T ss_pred chhhhhHHHHHHhccccCCCCcceEEEEE
Confidence 8654 366788889999999988888764
No 75
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=3.6e-32 Score=278.86 Aligned_cols=310 Identities=21% Similarity=0.235 Sum_probs=208.6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHH
Q 013392 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~ 106 (444)
.+..+.+.+..|+. |+++|+.+++.++.|+++++++|||+|||. +.+++...+.. .+.+++||+||++|+
T Consensus 65 ~~f~~~f~~~~g~~-p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa 134 (1171)
T TIGR01054 65 KEFEEFFKKAVGSE-PWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLV 134 (1171)
T ss_pred HHHHHHHHHhcCCC-CcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHH
Confidence 34555565555665 999999999999999999999999999997 44455444432 256799999999999
Q ss_pred HHHHHHHHHHhcccCcee--eEEEeCCcchhHH---HHHhc-CCCcEEEeCchHHHHHHhccCccccCCccEEEEechhH
Q 013392 107 LQVYEILHKLLHRFHWIV--PGYVMGGENRSKE---KARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR 180 (444)
Q Consensus 107 ~q~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~ 180 (444)
.|+.+.+.+++...+... ...++++...... ...+. ++++|+|+||+.|...+.... ..++++|+||||+
T Consensus 135 ~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~----~~~~~iVvDEaD~ 210 (1171)
T TIGR01054 135 IQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG----PKFDFIFVDDVDA 210 (1171)
T ss_pred HHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc----CCCCEEEEeChHh
Confidence 999999999987654322 2345566554432 22333 358999999999988766421 1789999999999
Q ss_pred hhh-----------cchhH-HHHHHHHHhcCCCCCCC-------CCCCcccccce--eEEEEEeec-chhhHHHHHhhcC
Q 013392 181 ILE-----------LGFGK-EIEEILDILGSRNIGSI-------GEGNEVSNVKR--QNLLLSATL-NEKVNHLAKISLE 238 (444)
Q Consensus 181 ~~~-----------~~~~~-~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~--~~i~~Sat~-~~~~~~~~~~~~~ 238 (444)
+++ .+|.. .+..++..++....... ........... +++++|||. +..... ..+.
T Consensus 211 ~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r 287 (1171)
T TIGR01054 211 LLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFR 287 (1171)
T ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcc
Confidence 987 33443 24444332211000000 00000000133 467789994 433221 1222
Q ss_pred CCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhccccc
Q 013392 239 TPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEV 318 (444)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 318 (444)
++..+.+... .....++.+.+..... +...+..+++.+
T Consensus 288 ~ll~~~v~~~-----------------------------------~~~~r~I~~~~~~~~~--~~~~L~~ll~~l----- 325 (1171)
T TIGR01054 288 ELLGFEVGGG-----------------------------------SDTLRNVVDVYVEDED--LKETLLEIVKKL----- 325 (1171)
T ss_pred cccceEecCc-----------------------------------cccccceEEEEEeccc--HHHHHHHHHHHc-----
Confidence 2222211111 0122445555554332 245566666553
Q ss_pred CceEEEEeccc---chhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEe--
Q 013392 319 SQKLVVFFSTC---DAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST-- 393 (444)
Q Consensus 319 ~~~~ivf~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t-- 393 (444)
+.++||||+++ +.++.+++.|.+. |+++..+||++++ ..++.|++|+.+|||||
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~~-----------------g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~ 384 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLENH-----------------GVKAVAYHATKPK----EDYEKFAEGEIDVLIGVAS 384 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHhC-----------------CceEEEEeCCCCH----HHHHHHHcCCCCEEEEecc
Confidence 35789999999 9999999999887 8899999999973 68999999999999995
Q ss_pred --cccccCCCCCC-CcEEEEccCCCC
Q 013392 394 --DVAARGLDFPK-VKCIIQYDSAGE 416 (444)
Q Consensus 394 --~~~~~G~di~~-~~~vi~~~~~~s 416 (444)
+.+++|+|+|+ +++||+|+.|..
T Consensus 385 ~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 385 YYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred ccCcccccCCCCccccEEEEECCCCE
Confidence 89999999999 899999999964
No 76
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3.2e-33 Score=278.23 Aligned_cols=352 Identities=17% Similarity=0.142 Sum_probs=216.9
Q ss_pred CCHHHHhHHHhHhcC--CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcc
Q 013392 42 PTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHR 119 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~--~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~ 119 (444)
|.|||.++...+... ..+++...+|.|||+.+.+.+...+.. +...++|||||. +|+.||..++.+.+.-
T Consensus 153 l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-------g~~~rvLIVvP~-sL~~QW~~El~~kF~l 224 (956)
T PRK04914 153 LIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-------GRAERVLILVPE-TLQHQWLVEMLRRFNL 224 (956)
T ss_pred CCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-------CCCCcEEEEcCH-HHHHHHHHHHHHHhCC
Confidence 999999998776644 479999999999999998777666555 345579999998 9999999999776541
Q ss_pred cCceeeEEEeCCcchhHHH---HHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcc-hhHHHHHHHH
Q 013392 120 FHWIVPGYVMGGENRSKEK---ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG-FGKEIEEILD 195 (444)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~-~~~~~~~~~~ 195 (444)
....+ ++....... .......+++|+|++.+...-.....+.-..+++||+||||++.... ........+.
T Consensus 225 ----~~~i~-~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~ 299 (956)
T PRK04914 225 ----RFSLF-DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVE 299 (956)
T ss_pred ----CeEEE-cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHH
Confidence 11122 221111110 01122357999999988652111112222478999999999985321 1111123333
Q ss_pred HhcCCCCCCCCCCCcccccceeEEEEEeecch-hhH-HHHHhhcCCCeEEcccCcCC--------------------C-C
Q 013392 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVN-HLAKISLETPVLIGLDEKKL--------------------P-E 252 (444)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~-~~~-~~~~~~~~~~~~~~~~~~~~--------------------~-~ 252 (444)
.+... ...++++||||.. ... .+..+.+-+|..+.--.... + .
T Consensus 300 ~La~~--------------~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~ 365 (956)
T PRK04914 300 QLAEV--------------IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLS 365 (956)
T ss_pred HHhhc--------------cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCC
Confidence 33221 4467899999963 222 23322222222211000000 0 0
Q ss_pred C--cc-------------------------------------------cccccCccccccccccCCCccc--cccCcc--
Q 013392 253 D--KS-------------------------------------------HVRFGSLESDVKEEVEHPSTTM--RSTTED-- 283 (444)
Q Consensus 253 ~--~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-- 283 (444)
. .. .+-+..-... ....+...... ......
T Consensus 366 ~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~-v~~fp~R~~~~~~l~~~~~y~ 444 (956)
T PRK04914 366 DDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAA-VKGFPKRELHPIPLPLPEQYQ 444 (956)
T ss_pred HHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHh-hcCCCcCceeEeecCCCHHHH
Confidence 0 00 0000000000 00000000000 000000
Q ss_pred -------------ccccccceee----EEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCC
Q 013392 284 -------------FKLPAQLVQR----YVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSP 346 (444)
Q Consensus 284 -------------~~~~~~~~~~----~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~ 346 (444)
...+..+... ......+.|.+.+.++++. ..+.|+||||+++..+..+.+.|....
T Consensus 445 ~~~~~~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~----~~~~KvLVF~~~~~t~~~L~~~L~~~~--- 517 (956)
T PRK04914 445 TAIKVSLEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKS----HRSEKVLVICAKAATALQLEQALRERE--- 517 (956)
T ss_pred HHHHHhHHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHh----cCCCeEEEEeCcHHHHHHHHHHHhhcc---
Confidence 0000000000 0012234567777777765 346799999999999999999995432
Q ss_pred CCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcC--CCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcc
Q 013392 347 HSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE--KKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRY 424 (444)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~ 424 (444)
|+++..+||+++..+|.++++.|+++ ..+|||||+++++|+|++.+++||+|+.|+|+..|.||+
T Consensus 518 -------------Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRI 584 (956)
T PRK04914 518 -------------GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRI 584 (956)
T ss_pred -------------CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHh
Confidence 88999999999999999999999974 589999999999999999999999999999999999999
Q ss_pred cccccCCCcccccceEE
Q 013392 425 LKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 425 GR~~R~g~~g~~~~~i~ 441 (444)
||++|.|++|.+..++.
T Consensus 585 GR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 585 GRLDRIGQKHDIQIHVP 601 (956)
T ss_pred cccccCCCCceEEEEEc
Confidence 99999999997655543
No 77
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.7e-32 Score=260.72 Aligned_cols=356 Identities=20% Similarity=0.205 Sum_probs=238.8
Q ss_pred HHcCCCCCCHHHHhHHHhHh-cCCcEEEEcCCCCchhHHhHHHHHHHHhccCC-CCCCCCCceEEEEeccHHHHHHHHHH
Q 013392 35 ERLGFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSP-RIDRSSGTFALVLVPTRELCLQVYEI 112 (444)
Q Consensus 35 ~~~~~~~~~~~Q~~~~~~~~-~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~-~~~~~~~~~vlil~P~~~L~~q~~~~ 112 (444)
.-|+|..++..|.++++.+. ++.+++||+|||+|||.+|++.+++.+..... .....+..|+++|+|.++|+.++.+.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 44688899999999999988 56899999999999999999999998875221 22223578999999999999999998
Q ss_pred HHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhcc--CccccCCccEEEEechhHhhhcchhHHH
Q 013392 113 LHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT--SSFLHTNLRWIIFDEADRILELGFGKEI 190 (444)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~--~~~~~~~~~lvV~DE~h~~~~~~~~~~~ 190 (444)
+.+-+..++ +...-++|+....... -..++|+|+||+++--.-+++ ....++.++|||+||+| ++.+..+..+
T Consensus 184 ~~kkl~~~g-i~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVH-lLhd~RGpvl 258 (1230)
T KOG0952|consen 184 FSKKLAPLG-ISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVH-LLHDDRGPVL 258 (1230)
T ss_pred Hhhhccccc-ceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeeh-hhcCcccchH
Confidence 888776655 3334444443333222 345789999999863221111 12345689999999999 5666688888
Q ss_pred HHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCC-CeEEcccCcCCCCCcccccccCcccccccc
Q 013392 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKKLPEDKSHVRFGSLESDVKEE 269 (444)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (444)
+.++.+...... .+-...+++++|||+|+-.+--..+.... ...+.++....|
T Consensus 259 EtiVaRtlr~ve--------ssqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRP------------------ 312 (1230)
T KOG0952|consen 259 ETIVARTLRLVE--------SSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRP------------------ 312 (1230)
T ss_pred HHHHHHHHHHHH--------hhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccc------------------
Confidence 887776652110 11226799999999998554433333321 233333333221
Q ss_pred ccCCCccccccCccccccccceeeEEEcCCC---CcH----HHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhc
Q 013392 270 VEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG---SRL----AVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEF 342 (444)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~----~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~ 342 (444)
.-+.+.++-.+.. .+. +...+-+.++. ..+..++|||.++..+...++.|.+.
T Consensus 313 ------------------vpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~ 372 (1230)
T KOG0952|consen 313 ------------------VPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRER 372 (1230)
T ss_pred ------------------cceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHH
Confidence 1122222222211 111 11222222221 45789999999999999998888665
Q ss_pred ccCCCCC-------chHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCC
Q 013392 343 QWSPHSQ-------PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (444)
Q Consensus 343 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~ 415 (444)
....+.. .....+..| ......+|+++..++|.-..+.|..|.++||+||..+..|+|+|+--++|.--..+
T Consensus 373 a~~~g~~~~f~~~~~~k~l~elf-~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~y 451 (1230)
T KOG0952|consen 373 AETNGEKDLFLPSPRNKQLKELF-QQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVY 451 (1230)
T ss_pred HHhcCcccccCCChhhHHHHHHH-HhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCccc
Confidence 4433211 123344444 45677899999999999999999999999999999999999997655544322111
Q ss_pred ----------CcchhhhcccccccCCCcccccceEEe
Q 013392 416 ----------EATEYVHRYLKHLPVGNFYFNIPLIVC 442 (444)
Q Consensus 416 ----------s~~~~~Q~~GR~~R~g~~g~~~~~i~~ 442 (444)
.+-+-+|..|||||.+-...+.++|++
T Consensus 452 dsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiT 488 (1230)
T KOG0952|consen 452 DSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIIT 488 (1230)
T ss_pred ccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEe
Confidence 244669999999998776667766654
No 78
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.2e-32 Score=268.55 Aligned_cols=326 Identities=20% Similarity=0.201 Sum_probs=240.7
Q ss_pred HHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHH
Q 013392 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~ 106 (444)
++....+...||...+|+-|.+++..++.|+++++.+|||.||+++|-+|++.. ++..|+|.|..+|.
T Consensus 250 ~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------------~gitvVISPL~SLm 317 (941)
T KOG0351|consen 250 KELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------------GGVTVVISPLISLM 317 (941)
T ss_pred hHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------------CCceEEeccHHHHH
Confidence 457778888999999999999999999999999999999999999998887662 33689999999999
Q ss_pred HHHHHHHHHHhcccCceeeEEEeCCcchh---HHHHHhcC---CCcEEEeCchHHHHHHhcc-CccccCC---ccEEEEe
Q 013392 107 LQVYEILHKLLHRFHWIVPGYVMGGENRS---KEKARLRK---GISILVATPGRLLDHLKHT-SSFLHTN---LRWIIFD 176 (444)
Q Consensus 107 ~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~iii~T~~~l~~~l~~~-~~~~~~~---~~lvV~D 176 (444)
+.+...+... .+....+.++.... ...+.+.. ..+|++.||+++...-.-. ....+.. +.++|+|
T Consensus 318 ~DQv~~L~~~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vID 392 (941)
T KOG0351|consen 318 QDQVTHLSKK-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVID 392 (941)
T ss_pred HHHHHhhhhc-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEec
Confidence 9988877443 23444454444443 23334433 4789999999886521110 1112223 7899999
Q ss_pred chhHhhhcc--hhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHH--HHHhhcCCCeEEcccCcCCCC
Q 013392 177 EADRILELG--FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH--LAKISLETPVLIGLDEKKLPE 252 (444)
Q Consensus 177 E~h~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 252 (444)
|||++..|+ |...-..+.......+ ...++++|||.+..+.. +..+.+.++..+.....
T Consensus 393 EAHCVSqWgHdFRp~Yk~l~~l~~~~~-------------~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfn---- 455 (941)
T KOG0351|consen 393 EAHCVSQWGHDFRPSYKRLGLLRIRFP-------------GVPFIALTATATERVREDVIRSLGLRNPELFKSSFN---- 455 (941)
T ss_pred HHHHhhhhcccccHHHHHHHHHHhhCC-------------CCCeEEeehhccHHHHHHHHHHhCCCCcceecccCC----
Confidence 999998885 3333333222222211 46789999999776555 44455556664332222
Q ss_pred CcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchh
Q 013392 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (444)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~ 332 (444)
..++...+..-........+...++. ......+||||.++..|
T Consensus 456 ----------------------------------R~NL~yeV~~k~~~~~~~~~~~~~~~---~~~~~s~IIYC~sr~~c 498 (941)
T KOG0351|consen 456 ----------------------------------RPNLKYEVSPKTDKDALLDILEESKL---RHPDQSGIIYCLSRKEC 498 (941)
T ss_pred ----------------------------------CCCceEEEEeccCccchHHHHHHhhh---cCCCCCeEEEeCCcchH
Confidence 11222222111112222222333333 36678999999999999
Q ss_pred hhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEcc
Q 013392 333 DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (444)
Q Consensus 333 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~ 412 (444)
+.+...|... +..++.||++|+..+|..+.++|..++.+|++||=+++.|+|-|+++.||+|.
T Consensus 499 e~vs~~L~~~-----------------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~ 561 (941)
T KOG0351|consen 499 EQVSAVLRSL-----------------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYS 561 (941)
T ss_pred HHHHHHHHHh-----------------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECC
Confidence 9999999998 78899999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhcccccccCCCcccccceE
Q 013392 413 SAGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 413 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
.|+|.+.|.|-+||+||.|....|++|-
T Consensus 562 lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 562 LPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred CchhHHHHHHhccccCcCCCcceeEEec
Confidence 9999999999999999999999998763
No 79
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=3.3e-32 Score=236.79 Aligned_cols=315 Identities=23% Similarity=0.311 Sum_probs=227.4
Q ss_pred CCceEEEEeccHHHHHHHHHHHHHHhcccCc--eeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCC
Q 013392 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHW--IVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTN 169 (444)
Q Consensus 92 ~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~ 169 (444)
+.+.++|+-|+++|+.|....+.+|-.+... .....+.+|...+++...+..+.+|+|+||.++...+.+ ....+..
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~ 363 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTH 363 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeee
Confidence 4578999999999999999988777554432 334466677888888888999999999999999999887 6777788
Q ss_pred ccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecch-hhHHHHHhhcCCCeEEcccCc
Q 013392 170 LRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVNHLAKISLETPVLIGLDEK 248 (444)
Q Consensus 170 ~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~-~~~~~~~~~~~~~~~~~~~~~ 248 (444)
++++|+||++.++..++.+.+..+...++.... .....|.+.+|||+.. ....+....+.-|.++.+...
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~ts---------dg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkge 434 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTS---------DGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGE 434 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhc---------CCcccccceeeeEEeEEEeeehhhhhccCceeEecccc
Confidence 999999999999998899999999888875321 1136799999999875 455566666666777766544
Q ss_pred CCCCCccccc--c--cCccccccccccCCCccccccCccccccccceeeEEEcCCC---C-----cHHHHHHHHHhhccc
Q 013392 249 KLPEDKSHVR--F--GSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG---S-----RLAVLLSILKHLFDT 316 (444)
Q Consensus 249 ~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----k~~~l~~~l~~~~~~ 316 (444)
..-......- . ........+..+..... ..+..-+......+.+ + |-++-...+++
T Consensus 435 D~vpetvHhvv~lv~p~~d~sw~~lr~~i~td--------~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~---- 502 (725)
T KOG0349|consen 435 DLVPETVHHVVKLVCPSVDGSWCDLRQFIETD--------KVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRR---- 502 (725)
T ss_pred cccchhhccceeecCCccCccHHHHhhhhccC--------CcccccccccccCCCCChhhhhHHhcCchhhhhhhh----
Confidence 3322211110 0 00000000000000000 0000000000001110 0 11111122222
Q ss_pred ccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEeccc
Q 013392 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA 396 (444)
Q Consensus 317 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~ 396 (444)
....++||||.++..|..+.+++.+..-. .+.++++||+..+.+|..-++.|+.++++.||||+++
T Consensus 503 h~mdkaiifcrtk~dcDnLer~~~qkgg~--------------~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdva 568 (725)
T KOG0349|consen 503 HAMDKAIIFCRTKQDCDNLERMMNQKGGK--------------HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVA 568 (725)
T ss_pred hccCceEEEEeccccchHHHHHHHHcCCc--------------cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhh
Confidence 44579999999999999999999887432 6789999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEEe
Q 013392 397 ARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIVC 442 (444)
Q Consensus 397 ~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~~ 442 (444)
.+|+|+..+-.+|++..|.....|+||+||+||+-+.|.+|+++.+
T Consensus 569 argldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 569 ARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred hccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeec
Confidence 9999999999999999999999999999999999999999999864
No 80
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=5.5e-32 Score=234.97 Aligned_cols=328 Identities=20% Similarity=0.244 Sum_probs=230.4
Q ss_pred HHHHHHHHHHcCCCCC-CHHHHhHHHhHhcC-CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHH
Q 013392 27 STLCDQLRERLGFEAP-TKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~-~~~Q~~~~~~~~~~-~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~ 104 (444)
....+.|++.||+..+ ++.|.+|+..+..+ +|+.+++|||+||++++-+|++.. +...|++.|..+
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiA 72 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIA 72 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHH
Confidence 4567889999998864 67999999888854 799999999999999999998772 236899999999
Q ss_pred HHHHHHHHHHHHhcccCceeeEEEeCCcchhH---HHHHhcCCCcEEEeCchHHH-----HHHhccCccccCCccEEEEe
Q 013392 105 LCLQVYEILHKLLHRFHWIVPGYVMGGENRSK---EKARLRKGISILVATPGRLL-----DHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 105 L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iii~T~~~l~-----~~l~~~~~~~~~~~~lvV~D 176 (444)
|..++.+-+.++--...... ..+ +....+. +..+...+..+++.||+... .+|.. ...-..+.++|+|
T Consensus 73 LIkDQiDHL~~LKVp~~SLN-SKl-St~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVD 148 (641)
T KOG0352|consen 73 LIKDQIDHLKRLKVPCESLN-SKL-STVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVD 148 (641)
T ss_pred HHHHHHHHHHhcCCchhHhc-chh-hHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEec
Confidence 99999988887521110000 000 0011111 11222345779999998642 23321 1122467899999
Q ss_pred chhHhhhcch--hHHH---HHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHH--HHHhhcCCCeEEcccCcC
Q 013392 177 EADRILELGF--GKEI---EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH--LAKISLETPVLIGLDEKK 249 (444)
Q Consensus 177 E~h~~~~~~~--~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~--~~~~~~~~~~~~~~~~~~ 249 (444)
|+|++..|++ .... -.+...++ ....+++|||.+..+.+ +..+.+..|+.+--.+..
T Consensus 149 EAHCVSQWGHDFRPDYL~LG~LRS~~~----------------~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F 212 (641)
T KOG0352|consen 149 EAHCVSQWGHDFRPDYLTLGSLRSVCP----------------GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF 212 (641)
T ss_pred hhhhHhhhccccCcchhhhhhHHhhCC----------------CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch
Confidence 9999988853 2222 22333332 56678999999886655 555667777665433332
Q ss_pred CCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcc---------cccCc
Q 013392 250 LPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFD---------TEVSQ 320 (444)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~---------~~~~~ 320 (444)
..+..+-+.|... -......|.++-...+. ....+
T Consensus 213 R~NLFYD~~~K~~------------------------------------I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~G 256 (641)
T KOG0352|consen 213 RDNLFYDNHMKSF------------------------------------ITDCLTVLADFSSSNLGKHEKASQNKKTFTG 256 (641)
T ss_pred hhhhhHHHHHHHH------------------------------------hhhHhHhHHHHHHHhcCChhhhhcCCCCcCc
Confidence 1111110101000 01112223333222221 23357
Q ss_pred eEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCC
Q 013392 321 KLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGL 400 (444)
Q Consensus 321 ~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~ 400 (444)
..||||.+++.++.++-.|... |+++..+|.++...+|.++.++|-+++..|++||..++.|+
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~-----------------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGV 319 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIA-----------------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGV 319 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhc-----------------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEecccccc
Confidence 8999999999999999999876 99999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEccCCCCcchhhhcccccccCCCcccccce
Q 013392 401 DFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPL 439 (444)
Q Consensus 401 di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 439 (444)
|-|++++||+++++.|+.-|.|-.||+||.|.+++|-+.
T Consensus 320 DKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 320 DKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred CCcceeEEEecCchhhhHHHHHhccccccCCCccceeee
Confidence 999999999999999999999999999999999988553
No 81
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.6e-30 Score=255.20 Aligned_cols=325 Identities=19% Similarity=0.225 Sum_probs=252.5
Q ss_pred cCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHh----cCC--cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 23 LGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL----SGR--HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 23 ~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~----~~~--~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
...+...++.+.+.|+|. .++-|..|++.+. +++ |=+|||+.|-|||.+|+-++...+.. +++|
T Consensus 577 f~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---------GKQV 646 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---------GKQV 646 (1139)
T ss_pred CCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---------CCeE
Confidence 345677788888999998 9999999999987 333 56999999999999999999888855 7889
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeE--EEeCCcchhHHHHHhc-CCCcEEEeCchHHHHHHhccCccccCCccEE
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPG--YVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~lv 173 (444)
.++|||.-|++|+++.|++-+..++..+.. .+.+..........+. +..||+|+|+.-| . +.+.+.+++|+
T Consensus 647 AvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~--kdv~FkdLGLl 720 (1139)
T COG1197 647 AVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----S--KDVKFKDLGLL 720 (1139)
T ss_pred EEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh----C--CCcEEecCCeE
Confidence 999999999999999999999887743321 1222223333334443 4599999995433 3 45556799999
Q ss_pred EEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCC
Q 013392 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (444)
Q Consensus 174 V~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (444)
|+||-|+ |+-...+-++.++. ..-++-+||||=++.-.+.-.+..+-..+...+...
T Consensus 721 IIDEEqR-----FGVk~KEkLK~Lr~---------------~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R--- 777 (1139)
T COG1197 721 IIDEEQR-----FGVKHKEKLKELRA---------------NVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR--- 777 (1139)
T ss_pred EEechhh-----cCccHHHHHHHHhc---------------cCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC---
Confidence 9999999 56566666666666 778899999998888888887777766654443321
Q ss_pred cccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhh
Q 013392 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (444)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~ 333 (444)
..+..+ +...+..-.-..+++++ ..++.+-...|.++..+
T Consensus 778 ----------------------------------~pV~T~---V~~~d~~~ireAI~REl---~RgGQvfYv~NrV~~Ie 817 (1139)
T COG1197 778 ----------------------------------LPVKTF---VSEYDDLLIREAILREL---LRGGQVFYVHNRVESIE 817 (1139)
T ss_pred ----------------------------------cceEEE---EecCChHHHHHHHHHHH---hcCCEEEEEecchhhHH
Confidence 011111 22222222223344554 56789988899999999
Q ss_pred hhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC
Q 013392 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (444)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~ 413 (444)
.+...|++. .|+.++++.||.|+..+-++++..|.+|+.+|||||.+.+.|+|+|+++.+|+.+.
T Consensus 818 ~~~~~L~~L---------------VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~A 882 (1139)
T COG1197 818 KKAERLREL---------------VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERA 882 (1139)
T ss_pred HHHHHHHHh---------------CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecc
Confidence 999999886 56899999999999999999999999999999999999999999999999998876
Q ss_pred CC-CcchhhhcccccccCCCcccccceEE
Q 013392 414 AG-EATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 414 ~~-s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
.+ -..++.|..||+||.++.+.||.+..
T Consensus 883 D~fGLsQLyQLRGRVGRS~~~AYAYfl~p 911 (1139)
T COG1197 883 DKFGLAQLYQLRGRVGRSNKQAYAYFLYP 911 (1139)
T ss_pred ccccHHHHHHhccccCCccceEEEEEeec
Confidence 54 46788999999999999999998754
No 82
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.98 E-value=2.7e-31 Score=270.41 Aligned_cols=361 Identities=18% Similarity=0.144 Sum_probs=207.5
Q ss_pred CCCHHHHhHHHhHh----c-CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVIL----S-GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~----~-~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
.+|+||.+|+..+. . .+++++++|||+|||++++..+...+.. ....++|||+|+.+|+.|+.+.+..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-------~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-------KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-------CccCeEEEEecHHHHHHHHHHHHHh
Confidence 49999999998776 2 3679999999999999877655554433 3346799999999999999999988
Q ss_pred HhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhcc----CccccCCccEEEEechhHhhhc-------
Q 013392 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT----SSFLHTNLRWIIFDEADRILEL------- 184 (444)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~----~~~~~~~~~lvV~DE~h~~~~~------- 184 (444)
+...... .....++..... ........+|+|+|+++|...+... ..+....+++||+||||+....
T Consensus 486 ~~~~~~~-~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 486 TKIEGDQ-TFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred ccccccc-chhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 6321110 000011000000 0111234689999999998865321 1235578899999999985321
Q ss_pred --c------hhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEccc-----CcCCC
Q 013392 185 --G------FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD-----EKKLP 251 (444)
Q Consensus 185 --~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 251 (444)
+ +......++... ....++|||||...... +++.|.....- ...+-
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yF-----------------dA~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv 621 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYF-----------------DAVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLI 621 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhc-----------------CccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcc
Confidence 0 123333444322 34679999998643221 22333321110 11100
Q ss_pred CCcccccccC------ccccccccccCCCccccccCccccccccce----eeEEEcCCCCcHHHHHHHHHhhcccccCce
Q 013392 252 EDKSHVRFGS------LESDVKEEVEHPSTTMRSTTEDFKLPAQLV----QRYVKVPCGSRLAVLLSILKHLFDTEVSQK 321 (444)
Q Consensus 252 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~ 321 (444)
.....+.+.. ......+............ .....+..+. .....+-.......+...+.+++....+.+
T Consensus 622 ~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i-~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~K 700 (1123)
T PRK11448 622 DHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEI-DLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGK 700 (1123)
T ss_pred cCcCCEEEEEEeccccccccccchhhhcchhhhhh-hhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCc
Confidence 0000001000 0000000000000000000 0000000000 000000011122222232223333333579
Q ss_pred EEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCC-cEEEEecccccCC
Q 013392 322 LVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK-ALLLSTDVAARGL 400 (444)
Q Consensus 322 ~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~-~iLi~t~~~~~G~ 400 (444)
+||||.++++|+.+.+.|.+....... ...+..+..++|+.+ ++.+++++|+++.. +|+|+++++.+|+
T Consensus 701 tiIF~~s~~HA~~i~~~L~~~f~~~~~--------~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~ 770 (1123)
T PRK11448 701 TLIFAATDAHADMVVRLLKEAFKKKYG--------QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGI 770 (1123)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHhhcC--------CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCC
Confidence 999999999999999988764211000 001234566888775 46789999999875 6999999999999
Q ss_pred CCCCCcEEEEccCCCCcchhhhcccccccCCC-cccccceEEee
Q 013392 401 DFPKVKCIIQYDSAGEATEYVHRYLKHLPVGN-FYFNIPLIVCF 443 (444)
Q Consensus 401 di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~-~g~~~~~i~~~ 443 (444)
|+|.+.+|++++++.|...|.||+||+.|.-. .|+-.++|+.|
T Consensus 771 DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~ 814 (1123)
T PRK11448 771 DVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDA 814 (1123)
T ss_pred CcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEeh
Confidence 99999999999999999999999999999543 36667776655
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.98 E-value=1.3e-30 Score=256.43 Aligned_cols=329 Identities=19% Similarity=0.171 Sum_probs=211.7
Q ss_pred CCCHHHHhHHHhHhcC---CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 41 APTKVQAQAIPVILSG---RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~---~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
.|+++|+++++.+..+ +++++.++||+|||.+++.++...+.. +.++|+++|+++|+.|+.+.+++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 4999999999999873 789999999999999998877776643 5679999999999999999999876
Q ss_pred cccCceeeEEEeCCcchhHH---HHH-hcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcch------h
Q 013392 118 HRFHWIVPGYVMGGENRSKE---KAR-LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF------G 187 (444)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~------~ 187 (444)
+ .....++++....+. +.. ..+..+|+|+|+..++. .+.++++||+||+|...-.+. .
T Consensus 215 g----~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~--------p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 215 G----APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFL--------PFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred C----CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcc--------cccCCCEEEEECCCccccccCcCCCCcH
Confidence 4 234556665544332 222 34558999999987642 346899999999997543221 1
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCcccccc
Q 013392 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVK 267 (444)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (444)
+.+..+. .... ..+++++|||++........ .+....+.+...........+..-++..
T Consensus 283 r~va~~r-a~~~---------------~~~~il~SATps~~s~~~~~--~g~~~~~~l~~r~~~~~~p~v~~id~~~--- 341 (679)
T PRK05580 283 RDLAVVR-AKLE---------------NIPVVLGSATPSLESLANAQ--QGRYRLLRLTKRAGGARLPEVEIIDMRE--- 341 (679)
T ss_pred HHHHHHH-hhcc---------------CCCEEEEcCCCCHHHHHHHh--ccceeEEEeccccccCCCCeEEEEechh---
Confidence 2222221 2222 77999999998755443332 2222232222221000000000000000
Q ss_pred ccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcc----
Q 013392 268 EEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQ---- 343 (444)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~---- 343 (444)
.... .....-...+...+++.. ..+.+++||++.+..+..+...-+...
T Consensus 342 ---------------------~~~~----~~~~~ls~~l~~~i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~ 394 (679)
T PRK05580 342 ---------------------LLRG----ENGSFLSPPLLEAIKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAECP 394 (679)
T ss_pred ---------------------hhhh----cccCCCCHHHHHHHHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccCCC
Confidence 0000 000112234555555542 456789999887654322221111100
Q ss_pred -----------------------c------------------CCCCCchHHHHHhhhccceEEEecCCC--HHHHHHHHH
Q 013392 344 -----------------------W------------------SPHSQPDMELKQLFLRCKTFRLHGNMK--QEDRRTTFG 380 (444)
Q Consensus 344 -----------------------~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~~~~ 380 (444)
. ...+...+.....|++.++..+|+++. +.+++++++
T Consensus 395 ~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~ 474 (679)
T PRK05580 395 HCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLA 474 (679)
T ss_pred CCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHH
Confidence 0 001122566677889999999999986 467899999
Q ss_pred HhhcCCCcEEEEecccccCCCCCCCcEEEEccCC--CCc----------chhhhcccccccCCCcccccc
Q 013392 381 AFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA--GEA----------TEYVHRYLKHLPVGNFYFNIP 438 (444)
Q Consensus 381 ~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~--~s~----------~~~~Q~~GR~~R~g~~g~~~~ 438 (444)
+|++|+.+|||+|++++.|+|+|++++|+.++.. -+. ..|.|++||+||.++.|.++.
T Consensus 475 ~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 475 QFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred HHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 9999999999999999999999999999766543 222 468999999999988887653
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=1.2e-29 Score=251.23 Aligned_cols=338 Identities=17% Similarity=0.158 Sum_probs=204.3
Q ss_pred CCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhccc
Q 013392 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~ 120 (444)
.|||+|..+........-++|.+|||+|||.+++.++...... +...+++|..||.++++|+++++.++....
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-------GLADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 5999999886544445678999999999999988876654433 345679999999999999999998755432
Q ss_pred -CceeeEEEeCCcchhH-----------------------HHHH-hcC---CCcEEEeCchHHHHHHhccCccccCCc--
Q 013392 121 -HWIVPGYVMGGENRSK-----------------------EKAR-LRK---GISILVATPGRLLDHLKHTSSFLHTNL-- 170 (444)
Q Consensus 121 -~~~~~~~~~~~~~~~~-----------------------~~~~-~~~---~~~iii~T~~~l~~~l~~~~~~~~~~~-- 170 (444)
+.......++...... .+.. ... -..|+|||.+.++..+...+...+..+
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 1122223333221110 0000 001 158999999988765443332222223
Q ss_pred --cEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHH-HHHhhcCCCeEEcccC
Q 013392 171 --RWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH-LAKISLETPVLIGLDE 247 (444)
Q Consensus 171 --~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~-~~~~~~~~~~~~~~~~ 247 (444)
++|||||+|. ++......+..+++.+... ...+|++|||+|..... +...+..... + ...
T Consensus 439 a~svvIiDEVHA-yD~ym~~lL~~~L~~l~~~--------------g~~vIllSATLP~~~r~~L~~a~~~~~~-~-~~~ 501 (878)
T PRK09694 439 GRSVLIVDEVHA-YDAYMYGLLEAVLKAQAQA--------------GGSVILLSATLPATLKQKLLDTYGGHDP-V-ELS 501 (878)
T ss_pred ccCeEEEechhh-CCHHHHHHHHHHHHHHHhc--------------CCcEEEEeCCCCHHHHHHHHHHhccccc-c-ccc
Confidence 4899999995 4554455666677666543 55789999999986554 3332211100 0 000
Q ss_pred cCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCC-CCcHHHHHHHHHhhcccccCceEEEEe
Q 013392 248 KKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFF 326 (444)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~ivf~ 326 (444)
..+|. +....... ... ...............+.-....... ......+..+++.. ..+.+++|||
T Consensus 502 ~~YPl----vt~~~~~~--~~~-----~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~---~~g~~vLVf~ 567 (878)
T PRK09694 502 SAYPL----ITWRGVNG--AQR-----FDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA---NAGAQVCLIC 567 (878)
T ss_pred ccccc----cccccccc--cee-----eeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH---hcCCEEEEEE
Confidence 00110 00000000 000 0000000000000111111111111 11122233333332 4567999999
Q ss_pred cccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHH----HHHHHh-hcCC---CcEEEEeccccc
Q 013392 327 STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR----TTFGAF-KTEK---KALLLSTDVAAR 398 (444)
Q Consensus 327 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~----~~~~~f-~~g~---~~iLi~t~~~~~ 398 (444)
|+++.++.+++.|++... .+..+..+|+.++..+|. ++++.| ++|+ ..|||+|++++.
T Consensus 568 NTV~~Aq~ly~~L~~~~~--------------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~ 633 (878)
T PRK09694 568 NLVDDAQKLYQRLKELNN--------------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQ 633 (878)
T ss_pred CCHHHHHHHHHHHHhhCC--------------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhh
Confidence 999999999999986521 035789999999999884 566777 5565 479999999999
Q ss_pred CCCCCCCcEEEEccCCCCcchhhhcccccccCCCc
Q 013392 399 GLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNF 433 (444)
Q Consensus 399 G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~ 433 (444)
|+|+ +++++|....| ...++||+||++|++.+
T Consensus 634 GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 634 SLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred eeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9999 68999998777 78999999999999863
No 85
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=1.7e-29 Score=215.50 Aligned_cols=202 Identities=44% Similarity=0.717 Sum_probs=172.6
Q ss_pred ccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEE
Q 013392 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (444)
Q Consensus 20 ~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil 99 (444)
|+++++++++.+.|.+ +|+..|+++|.++++.+.+++++++++|||+|||+++++++++.+.... ..++++++|+
T Consensus 1 ~~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii 75 (203)
T cd00268 1 FEELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALIL 75 (203)
T ss_pred CCcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEE
Confidence 7889999999999955 7999999999999999999999999999999999999999999887632 1246789999
Q ss_pred eccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechh
Q 013392 100 VPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEAD 179 (444)
Q Consensus 100 ~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h 179 (444)
+|+++|+.|+.+.+..+....+ .....+.++............+++|+|+||+.+...+.+ ....+.+++++|+||+|
T Consensus 76 ~p~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~l~~lIvDE~h 153 (203)
T cd00268 76 APTRELALQIAEVARKLGKHTN-LKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLER-GKLDLSKVKYLVLDEAD 153 (203)
T ss_pred cCCHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCCChhhCCEEEEeChH
Confidence 9999999999999999876533 555666777666666666666889999999999998886 44667889999999999
Q ss_pred HhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEE
Q 013392 180 RILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~ 243 (444)
.+.+.++...+..+...+.. .++++++|||+++....+...+..+|..+
T Consensus 154 ~~~~~~~~~~~~~~~~~l~~---------------~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 154 RMLDMGFEDQIREILKLLPK---------------DRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HhhccChHHHHHHHHHhCCc---------------ccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 98887888888888888765 88999999999999888888888887765
No 86
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=239.93 Aligned_cols=374 Identities=19% Similarity=0.163 Sum_probs=247.9
Q ss_pred HHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHH
Q 013392 29 LCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (444)
Q Consensus 29 i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q 108 (444)
++..+...++|+ |-++|++|+.++..|..+++.|+|.+|||++|-.++...-.+ ..++++-.|-++|-+|
T Consensus 286 lVpe~a~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h---------~TR~iYTSPIKALSNQ 355 (1248)
T KOG0947|consen 286 LVPEMALIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH---------MTRTIYTSPIKALSNQ 355 (1248)
T ss_pred hchhHHhhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh---------ccceEecchhhhhccc
Confidence 444555677997 999999999999999999999999999999987766554433 6779999999999999
Q ss_pred HHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhH
Q 013392 109 VYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188 (444)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~ 188 (444)
-.+.|+..+++.+ .++|+... ...+.++|+|.+.|.+++.+ +.-..+++..|||||+|.+.+...+-
T Consensus 356 KfRDFk~tF~Dvg-----LlTGDvqi-------nPeAsCLIMTTEILRsMLYr-gadliRDvE~VIFDEVHYiND~eRGv 422 (1248)
T KOG0947|consen 356 KFRDFKETFGDVG-----LLTGDVQI-------NPEASCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYINDVERGV 422 (1248)
T ss_pred hHHHHHHhccccc-----eeecceee-------CCCcceEeehHHHHHHHHhc-ccchhhccceEEEeeeeecccccccc
Confidence 9999999887644 33333322 23457999999999999987 33345789999999999988888999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCC--eEEc-ccCcCCCCCccccc-------
Q 013392 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP--VLIG-LDEKKLPEDKSHVR------- 258 (444)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~------- 258 (444)
.++++.-+++. ..++|++|||+|+..+...|.+.... .++. ....+.|-......
T Consensus 423 VWEEViIMlP~---------------HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~ki 487 (1248)
T KOG0947|consen 423 VWEEVIIMLPR---------------HVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKI 487 (1248)
T ss_pred cceeeeeeccc---------------cceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehh
Confidence 99999999988 88999999999998777666543222 1111 11222111111000
Q ss_pred ------ccCc-cccccccccC---------CCccccccCcc---ccccccceeeEEEcCCCCcH--HHHHHHHHhhcccc
Q 013392 259 ------FGSL-ESDVKEEVEH---------PSTTMRSTTED---FKLPAQLVQRYVKVPCGSRL--AVLLSILKHLFDTE 317 (444)
Q Consensus 259 ------~~~~-~~~~~~~~~~---------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~--~~l~~~l~~~~~~~ 317 (444)
|-.. -+...+.... ........... .....+-..... .....+. ....+++..+ ...
T Consensus 488 idq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~-~~~~nrr~~~~~l~lin~L-~k~ 565 (1248)
T KOG0947|consen 488 IDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGS-GIGKNRRKQPTWLDLINHL-RKK 565 (1248)
T ss_pred hcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccc-cccccccccchHHHHHHHH-hhc
Confidence 0000 0000000000 00000000000 000000000000 0001111 2233333332 234
Q ss_pred cCceEEEEecccchhhhhhhhhhhcccCCC-CCc---------------------hHHHHHhhhccceEEEecCCCHHHH
Q 013392 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPH-SQP---------------------DMELKQLFLRCKTFRLHGNMKQEDR 375 (444)
Q Consensus 318 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~-~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~r 375 (444)
.-.|+||||=+++.|+..+++|.......+ +.. ....-.......++++||++-+--+
T Consensus 566 ~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivK 645 (1248)
T KOG0947|consen 566 NLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVK 645 (1248)
T ss_pred ccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHH
Confidence 557999999999999999999977654332 111 1111222345677889999999999
Q ss_pred HHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEcc--------CCCCcchhhhcccccccCCCcccccceEEe
Q 013392 376 RTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD--------SAGEATEYVHRYLKHLPVGNFYFNIPLIVC 442 (444)
Q Consensus 376 ~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~--------~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~~ 442 (444)
+-+.-.|..|-++||+||.++..|+|+|.-.+|+.-- .--.+..|.|++|||||.|-+-.+..+|.|
T Consensus 646 E~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~ 720 (1248)
T KOG0947|consen 646 EVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMC 720 (1248)
T ss_pred HHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEe
Confidence 9999999999999999999999999998777766421 112467999999999999987777777776
No 87
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=1.7e-29 Score=216.62 Aligned_cols=329 Identities=17% Similarity=0.164 Sum_probs=237.1
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEec
Q 013392 22 SLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (444)
Q Consensus 22 ~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 101 (444)
+.+-+.+..+.|+..|.++.+||.|..++...+.++++++..|||.||++++.+|++.. ...+|+++|
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------------dg~alvi~p 142 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------------DGFALVICP 142 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------------CCceEeech
Confidence 44566788889988999999999999999999999999999999999999999998762 344899999
Q ss_pred cHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHH---HHH---hcCCCcEEEeCchHHHH------HHhccCccccCC
Q 013392 102 TRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KAR---LRKGISILVATPGRLLD------HLKHTSSFLHTN 169 (444)
Q Consensus 102 ~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~iii~T~~~l~~------~l~~~~~~~~~~ 169 (444)
..+|+.++.-.++.++-... .+....+..+. ... ..+...+++.||+++.. .++ +.+....
T Consensus 143 lislmedqil~lkqlgi~as-----~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkle--ka~~~~~ 215 (695)
T KOG0353|consen 143 LISLMEDQILQLKQLGIDAS-----MLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLE--KALEAGF 215 (695)
T ss_pred hHHHHHHHHHHHHHhCcchh-----hccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHH--HHhhcce
Confidence 99999999988888753322 11112222111 111 23346799999997643 333 3344567
Q ss_pred ccEEEEechhHhhhcchh-----HHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEc
Q 013392 170 LRWIIFDEADRILELGFG-----KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244 (444)
Q Consensus 170 ~~lvV~DE~h~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~ 244 (444)
+.+|-+||+|+-..+++. ..+.-+.+.++ ...++++|||.++..-.-.+..+.-...+.
T Consensus 216 ~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~----------------~~~iigltatatn~vl~d~k~il~ie~~~t 279 (695)
T KOG0353|consen 216 FKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFK----------------GAPIIGLTATATNHVLDDAKDILCIEAAFT 279 (695)
T ss_pred eEEEeecceeehhhhCcccCcchHHHHHHHHhCC----------------CCceeeeehhhhcchhhHHHHHHhHHhhhe
Confidence 899999999998777532 22223333333 678999999987654333332211111111
Q ss_pred ccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEE
Q 013392 245 LDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVV 324 (444)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~iv 324 (444)
+.... ...++..... ..++.--+...++.+.......+...||
T Consensus 280 f~a~f------------------------------------nr~nl~yev~-qkp~n~dd~~edi~k~i~~~f~gqsgii 322 (695)
T KOG0353|consen 280 FRAGF------------------------------------NRPNLKYEVR-QKPGNEDDCIEDIAKLIKGDFAGQSGII 322 (695)
T ss_pred eeccc------------------------------------CCCCceeEee-eCCCChHHHHHHHHHHhccccCCCcceE
Confidence 11110 0011221111 1222222333333333333345678899
Q ss_pred EecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCC
Q 013392 325 FFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK 404 (444)
Q Consensus 325 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~ 404 (444)
||=+.+.++.+...|+.+ |+.+..+|..+.++++.-..+.|..|++.|+|+|-+++.|+|-|+
T Consensus 323 yc~sq~d~ekva~alkn~-----------------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpd 385 (695)
T KOG0353|consen 323 YCFSQKDCEKVAKALKNH-----------------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPD 385 (695)
T ss_pred EEeccccHHHHHHHHHhc-----------------CccccccccccCccccccccccccccceEEEEEEeeecccCCCCC
Confidence 999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred CcEEEEccCCCCcchhhh-------------------------------------------cccccccCCCcccccce
Q 013392 405 VKCIIQYDSAGEATEYVH-------------------------------------------RYLKHLPVGNFYFNIPL 439 (444)
Q Consensus 405 ~~~vi~~~~~~s~~~~~Q-------------------------------------------~~GR~~R~g~~g~~~~~ 439 (444)
+++||+...|.|++.|.| -.||+||.+++..||..
T Consensus 386 vrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cily 463 (695)
T KOG0353|consen 386 VRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILY 463 (695)
T ss_pred eeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEE
Confidence 999999999999999999 67999999999888764
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.1e-29 Score=241.04 Aligned_cols=306 Identities=19% Similarity=0.184 Sum_probs=191.4
Q ss_pred EEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHH--
Q 013392 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE-- 137 (444)
Q Consensus 60 il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 137 (444)
++.|+||+|||.+++.++...+.. +.++|+++|+++|+.|+.+.+++.++. ....++++....+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---------g~~vLvlvP~i~L~~Q~~~~l~~~f~~----~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---------GKSVLVLVPEIALTPQMIQRFKYRFGS----QVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHhCC----cEEEEECCCCHHHHHH
Confidence 478999999999988776655533 567999999999999999999987642 23445554443322
Q ss_pred -HHH-hcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcc------hhHHHHHHHHHhcCCCCCCCCCCC
Q 013392 138 -KAR-LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG------FGKEIEEILDILGSRNIGSIGEGN 209 (444)
Q Consensus 138 -~~~-~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~ 209 (444)
+.. ..+..+|+|+|+..++. .+.++++||+||.|...-.+ ..+.+..+.....
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf~--------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~----------- 128 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALFL--------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKF----------- 128 (505)
T ss_pred HHHHHHcCCCCEEECChHHHcC--------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhc-----------
Confidence 222 33458999999987742 35688999999999865332 1123333333322
Q ss_pred cccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCcccccccc
Q 013392 210 EVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQ 289 (444)
Q Consensus 210 ~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (444)
..+++++||||+........ .+....+.............+..-++
T Consensus 129 -----~~~vil~SATPsles~~~~~--~g~~~~~~l~~r~~~~~~p~v~vid~--------------------------- 174 (505)
T TIGR00595 129 -----NCPVVLGSATPSLESYHNAK--QKAYRLLVLTRRVSGRKPPEVKLIDM--------------------------- 174 (505)
T ss_pred -----CCCEEEEeCCCCHHHHHHHh--cCCeEEeechhhhcCCCCCeEEEEec---------------------------
Confidence 77899999997754333322 12222222211110000000000000
Q ss_pred ceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhh---------------------------hhc
Q 013392 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL---------------------------SEF 342 (444)
Q Consensus 290 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l---------------------------~~~ 342 (444)
... .....-...+.+.+++.. ..+.++|||+|.+..+..+...- +..
T Consensus 175 -~~~---~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~ 248 (505)
T TIGR00595 175 -RKE---PRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGY 248 (505)
T ss_pred -ccc---cccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcC
Confidence 000 000112234555555443 45678999988776532221110 000
Q ss_pred cc------CC------------CCCchHHHHHhhhccceEEEecCCCHHHH--HHHHHHhhcCCCcEEEEecccccCCCC
Q 013392 343 QW------SP------------HSQPDMELKQLFLRCKTFRLHGNMKQEDR--RTTFGAFKTEKKALLLSTDVAARGLDF 402 (444)
Q Consensus 343 ~~------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~f~~g~~~iLi~t~~~~~G~di 402 (444)
.. +. .+..++.....|++.++..+|++++...+ +.++++|++|+.+|||+|++++.|+|+
T Consensus 249 ~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~ 328 (505)
T TIGR00595 249 QEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHF 328 (505)
T ss_pred cCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCC
Confidence 00 00 11125666778999999999999877655 899999999999999999999999999
Q ss_pred CCCcEEEEccCCC--C----------cchhhhcccccccCCCccccc
Q 013392 403 PKVKCIIQYDSAG--E----------ATEYVHRYLKHLPVGNFYFNI 437 (444)
Q Consensus 403 ~~~~~vi~~~~~~--s----------~~~~~Q~~GR~~R~g~~g~~~ 437 (444)
|+++.|+.++... + ...|.|++||+||.++.|.++
T Consensus 329 ~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 329 PNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVI 375 (505)
T ss_pred CcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEE
Confidence 9999987554432 1 346899999999999888765
No 89
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=2.5e-28 Score=246.91 Aligned_cols=304 Identities=19% Similarity=0.243 Sum_probs=193.3
Q ss_pred CHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc----HHHHHHHHHHHHHHhc
Q 013392 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT----RELCLQVYEILHKLLH 118 (444)
Q Consensus 43 ~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~----~~L~~q~~~~l~~~~~ 118 (444)
..+-.+.++.+..++.++++|+||||||.. +|.+...... +....+++.-|. ++++.++++++..-.+
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~------g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGR------GVKGLIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCC------CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 334456777777788889999999999984 3422211110 111223333464 5666666666664222
Q ss_pred ccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhH-hhhcchhHHHHHHHHHh
Q 013392 119 RFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR-ILELGFGKEIEEILDIL 197 (444)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~-~~~~~~~~~~~~~~~~l 197 (444)
. .+...+ ... .....+++|+|+||..|+..+... ..++.+++||+||+|+ +++.++... .+...+
T Consensus 148 ~---~VGY~v----rf~---~~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfLLg--~Lk~lL 213 (1294)
T PRK11131 148 G---CVGYKV----RFN---DQVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFILG--YLKELL 213 (1294)
T ss_pred c---eeceee----cCc---cccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchHHH--HHHHhh
Confidence 1 111111 111 112356789999999999988753 3378999999999994 555444321 122222
Q ss_pred cCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccc
Q 013392 198 GSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTM 277 (444)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (444)
+..+ ..|++++|||++. ..+...+...|. +.+.....+
T Consensus 214 ~~rp-------------dlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~~p-------------------------- 251 (1294)
T PRK11131 214 PRRP-------------DLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRTYP-------------------------- 251 (1294)
T ss_pred hcCC-------------CceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcccc--------------------------
Confidence 2211 6799999999974 355555544443 322221110
Q ss_pred cccCccccccccceeeEEEcCC------CCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCch
Q 013392 278 RSTTEDFKLPAQLVQRYVKVPC------GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPD 351 (444)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~ 351 (444)
+...+..... ...+..+...+..+. ....+.+|||+++..+++.+++.|.+...
T Consensus 252 ------------Vei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~~~------- 311 (1294)
T PRK11131 252 ------------VEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADALNKLNL------- 311 (1294)
T ss_pred ------------ceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhcCC-------
Confidence 0011111110 112233333333322 23457899999999999999999987521
Q ss_pred HHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC---------------C--
Q 013392 352 MELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS---------------A-- 414 (444)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~---------------~-- 414 (444)
+...+..+||+++.++|.++++. .|..+|||||+++++|+|+|++++||++|. |
T Consensus 312 -------~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~ 382 (1294)
T PRK11131 312 -------RHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIE 382 (1294)
T ss_pred -------CcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCee
Confidence 13457889999999999999876 477899999999999999999999999862 2
Q ss_pred -CCcchhhhcccccccCCCcccccceE
Q 013392 415 -GEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 415 -~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
.|..+|.||+||+||. ++|.||.+.
T Consensus 383 ~iSkasa~QRaGRAGR~-~~G~c~rLy 408 (1294)
T PRK11131 383 PISQASANQRKGRCGRV-SEGICIRLY 408 (1294)
T ss_pred ecCHhhHhhhccccCCC-CCcEEEEeC
Confidence 3456899999999998 789998775
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=5e-28 Score=234.94 Aligned_cols=371 Identities=15% Similarity=0.141 Sum_probs=229.9
Q ss_pred HHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHH
Q 013392 33 LRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (444)
Q Consensus 33 l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 112 (444)
.....|.. +++.|..+--.+..|+ |..++||+|||+++++|++..+.. +..|+|++|++.|+.|.+++
T Consensus 75 ~~R~lg~~-~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e~ 142 (896)
T PRK13104 75 SLRTLGLR-HFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQW 142 (896)
T ss_pred HHHHcCCC-cchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHHH
Confidence 33444775 8888888777766665 999999999999999999987755 34599999999999999999
Q ss_pred HHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHH-HHHHhccCcccc-----CCccEEEEechhHhhhcc-
Q 013392 113 LHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSSFLH-----TNLRWIIFDEADRILELG- 185 (444)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~~~~~~-----~~~~lvV~DE~h~~~~~~- 185 (444)
+..+...++ ....++.++......... .+++|+|+||..| ++++...-.+.+ ..+.++|+||+|+++-+.
T Consensus 143 m~~l~~~lG-Ltv~~i~gg~~~~~r~~~--y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeA 219 (896)
T PRK13104 143 MKPIYEFLG-LTVGVIYPDMSHKEKQEA--YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEA 219 (896)
T ss_pred HHHHhcccC-ceEEEEeCCCCHHHHHHH--hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhcc
Confidence 999988877 555666666555544333 3689999999999 888876423323 588999999999864431
Q ss_pred ---------------hhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhH--------------------
Q 013392 186 ---------------FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVN-------------------- 230 (444)
Q Consensus 186 ---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~-------------------- 230 (444)
....+..+...+...-... ....-..+...+.+.+|-.-.....
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~-~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~ 298 (896)
T PRK13104 220 RTPLIISGAAEDSSELYIKINSLIPQLKKQEEEG-DEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASN 298 (896)
T ss_pred CCceeeeCCCccchHHHHHHHHHHHHHHhccccC-CCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchh
Confidence 2233344444443210000 0000000111111212111000000
Q ss_pred ----HHHHh-------hcCC-------CeEE---------------------------------------cccCcCCCCC
Q 013392 231 ----HLAKI-------SLET-------PVLI---------------------------------------GLDEKKLPED 253 (444)
Q Consensus 231 ----~~~~~-------~~~~-------~~~~---------------------------------------~~~~~~~~~~ 253 (444)
..... +..+ ..++ .++...+...
T Consensus 299 ~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~ 378 (896)
T PRK13104 299 IMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRM 378 (896)
T ss_pred hhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHh
Confidence 00000 0000 0000 0000000000
Q ss_pred cccc-cc-cCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccch
Q 013392 254 KSHV-RF-GSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (444)
Q Consensus 254 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~ 331 (444)
+..+ .+ +.......+-.......+.....+...........+......|...+...+.+.. ..+.|+||||++++.
T Consensus 379 Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~--~~g~PVLVgt~Sie~ 456 (896)
T PRK13104 379 YNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECG--VRKQPVLVGTVSIEA 456 (896)
T ss_pred cchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCcHHH
Confidence 0000 00 0000000111111111111111111112222233445556778888888887764 568899999999999
Q ss_pred hhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCc-----
Q 013392 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVK----- 406 (444)
Q Consensus 332 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~----- 406 (444)
++.++.+|.+. +++...+|++..+.++..+.+.|+.| .|+|||+++++|+|+. +.
T Consensus 457 sE~ls~~L~~~-----------------gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~-Lggn~~~ 516 (896)
T PRK13104 457 SEFLSQLLKKE-----------------NIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIV-LGGSLAA 516 (896)
T ss_pred HHHHHHHHHHc-----------------CCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCccee-cCCchhh
Confidence 99999999998 99999999999999999999999999 5999999999999994 22
Q ss_pred ----------------------------------EEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 407 ----------------------------------CIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 407 ----------------------------------~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+||--..+.|-+---|-.||+||.|.+|.+-.|++
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lS 585 (896)
T PRK13104 517 DLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLS 585 (896)
T ss_pred hhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEE
Confidence 35555677777777999999999999999988775
No 91
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=237.91 Aligned_cols=367 Identities=17% Similarity=0.179 Sum_probs=243.9
Q ss_pred cCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcC-CcEEEEcCCCCchhHHhHHHHHHHHhccCCCC--CCCCCceEEEE
Q 013392 23 LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRI--DRSSGTFALVL 99 (444)
Q Consensus 23 ~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~-~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~vlil 99 (444)
..++.|-...+ +|...++..|-...++.+.+ .++++|||||+|||.++++-+++.+....+.. -+-...++.++
T Consensus 294 selP~Wnq~aF---~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYI 370 (1674)
T KOG0951|consen 294 SELPKWNQPAF---FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYI 370 (1674)
T ss_pred cCCcchhhhhc---ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEE
Confidence 34666666666 36666999999999998855 68999999999999999999999987644422 12235689999
Q ss_pred eccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhcc-Cc-cccCCccEEEEec
Q 013392 100 VPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT-SS-FLHTNLRWIIFDE 177 (444)
Q Consensus 100 ~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~-~~-~~~~~~~lvV~DE 177 (444)
+|.++|++.|...+.+.+..++. ...-.+++..... .--.+.+|+||||++.-- +.+. .. -..+-++++|+||
T Consensus 371 APmKaLvqE~VgsfSkRla~~GI-~V~ElTgD~~l~~---~qieeTqVIV~TPEK~Di-ITRk~gdraY~qlvrLlIIDE 445 (1674)
T KOG0951|consen 371 APMKALVQEMVGSFSKRLAPLGI-TVLELTGDSQLGK---EQIEETQVIVTTPEKWDI-ITRKSGDRAYEQLVRLLIIDE 445 (1674)
T ss_pred eeHHHHHHHHHHHHHhhccccCc-EEEEecccccchh---hhhhcceeEEeccchhhh-hhcccCchhHHHHHHHHhhhh
Confidence 99999999999999998887773 3334443322111 112346799999998632 3321 11 1223578999999
Q ss_pred hhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccc
Q 013392 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (444)
Q Consensus 178 ~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (444)
.| +..+..+...+.+..+..... ......+.++++|||+|+-.+--.=+....+..+.++....
T Consensus 446 IH-LLhDdRGpvLESIVaRt~r~s--------es~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syR------- 509 (1674)
T KOG0951|consen 446 IH-LLHDDRGPVLESIVARTFRRS--------ESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYR------- 509 (1674)
T ss_pred hh-hcccccchHHHHHHHHHHHHh--------hhcccCceeeeecccCCchhhhHHHhccCcccccccCcccC-------
Confidence 99 565557777766555443221 11222789999999999843322211122233333333321
Q ss_pred cccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHH---HHHH-HHhhcccccCceEEEEecccchhh
Q 013392 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAV---LLSI-LKHLFDTEVSQKLVVFFSTCDAVD 333 (444)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---l~~~-l~~~~~~~~~~~~ivf~~~~~~~~ 333 (444)
|.-+.+.++.+........ ..+. ....++....+++|||+.+++++.
T Consensus 510 -----------------------------pvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ 560 (1674)
T KOG0951|consen 510 -----------------------------PVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETA 560 (1674)
T ss_pred -----------------------------cCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHH
Confidence 2223444444433322221 1111 122223344589999999999988
Q ss_pred hhhhhhhhccc----------CCC----------CCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEe
Q 013392 334 FHYSLLSEFQW----------SPH----------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST 393 (444)
Q Consensus 334 ~l~~~l~~~~~----------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t 393 (444)
+.++.++.... ... +..........+.+.++.+|++|+..+|....+.|++|.++++++|
T Consensus 561 ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvst 640 (1674)
T KOG0951|consen 561 KTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVST 640 (1674)
T ss_pred HHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEee
Confidence 88888763221 111 1111112223568899999999999999999999999999999999
Q ss_pred cccccCCCCCCCcEEEE----ccC------CCCcchhhhcccccccCCCcccccceEEe
Q 013392 394 DVAARGLDFPKVKCIIQ----YDS------AGEATEYVHRYLKHLPVGNFYFNIPLIVC 442 (444)
Q Consensus 394 ~~~~~G~di~~~~~vi~----~~~------~~s~~~~~Q~~GR~~R~g~~g~~~~~i~~ 442 (444)
..+++|+|+|.=+++|- |++ +-++.+-+||.||+||.+-++.+-.+|++
T Consensus 641 atlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit 699 (1674)
T KOG0951|consen 641 ATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIIT 699 (1674)
T ss_pred hhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeecc
Confidence 99999999988777763 332 23567889999999999988877777764
No 92
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=5.2e-28 Score=237.52 Aligned_cols=368 Identities=18% Similarity=0.198 Sum_probs=242.8
Q ss_pred HHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHH
Q 013392 34 RERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (444)
Q Consensus 34 ~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l 113 (444)
...++|. |-++|++++..+..+.++++++|||+|||+++-.++...+.+ +.++++..|.++|.+|.++.+
T Consensus 113 ~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---------~qrviYTsPIKALsNQKyrdl 182 (1041)
T COG4581 113 AREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---------GQRVIYTSPIKALSNQKYRDL 182 (1041)
T ss_pred HHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---------CCceEeccchhhhhhhHHHHH
Confidence 3567997 999999999999999999999999999999999988887765 556999999999999999998
Q ss_pred HHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHH
Q 013392 114 HKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193 (444)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~ 193 (444)
...+.+. --..+..+++...+ .++.++|+|.+.|.+++.. +...+..+..|||||+|.+.+...+-.++..
T Consensus 183 ~~~fgdv-~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyr-g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~ 253 (1041)
T COG4581 183 LAKFGDV-ADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYR-GSESLRDIEWVVFDEVHYIGDRERGVVWEEV 253 (1041)
T ss_pred HHHhhhh-hhhccceecceeeC-------CCCceEEeeHHHHHHHhcc-CcccccccceEEEEeeeeccccccchhHHHH
Confidence 8776643 11123333333322 3457999999999999887 5566789999999999999988889999999
Q ss_pred HHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhh--cCCCeEE-cccCcCCCCCcccccccC-cccccccc
Q 013392 194 LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKIS--LETPVLI-GLDEKKLPEDKSHVRFGS-LESDVKEE 269 (444)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~ 269 (444)
.-.++. ..+++++|||+++..+.-.|.. -..+..+ ..+..+. ......+.. .-.+..+.
T Consensus 254 Ii~lP~---------------~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~Rpv--PL~~~~~~~~~l~~lvde 316 (1041)
T COG4581 254 IILLPD---------------HVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPV--PLEHFVYVGKGLFDLVDE 316 (1041)
T ss_pred HHhcCC---------------CCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCC--CeEEEEecCCceeeeecc
Confidence 999887 7799999999999776655543 2233332 2222222 222222111 00000000
Q ss_pred cc-----CCCccccccC---ccccccccceeeEE---------EcCCCCcHHHHHHHHHhhcccccCceEEEEecccchh
Q 013392 270 VE-----HPSTTMRSTT---EDFKLPAQLVQRYV---------KVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (444)
Q Consensus 270 ~~-----~~~~~~~~~~---~~~~~~~~~~~~~~---------~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~ 332 (444)
.. .......... .......+-...+. .+....+...+.+.+. .....++|+|+=++..|
T Consensus 317 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~----~~~~lP~I~F~FSr~~C 392 (1041)
T COG4581 317 KKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLD----KDNLLPAIVFSFSRRGC 392 (1041)
T ss_pred cccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhh----hhcCCceEEEEEchhhH
Confidence 00 0000000000 00000000000000 0011112122222222 24567999999999999
Q ss_pred hhhhhhhhhcccCCCCCchHHHHH------------------------hhhccceEEEecCCCHHHHHHHHHHhhcCCCc
Q 013392 333 DFHYSLLSEFQWSPHSQPDMELKQ------------------------LFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKA 388 (444)
Q Consensus 333 ~~l~~~l~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 388 (444)
+..+..+...........+..... ..+...++.+|+++=+..|..+...|..|-++
T Consensus 393 e~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvk 472 (1041)
T COG4581 393 EEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVK 472 (1041)
T ss_pred HHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhcccee
Confidence 999988875443333222220100 01233445799999999999999999999999
Q ss_pred EEEEecccccCCCCCCCcEEEE----cc----CCCCcchhhhcccccccCCCcccccceEE
Q 013392 389 LLLSTDVAARGLDFPKVKCIIQ----YD----SAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 389 iLi~t~~~~~G~di~~~~~vi~----~~----~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
|+++|.+++.|+|+|.=++|+- ++ ..-+...|.|+.||+||.|.+-.+..+++
T Consensus 473 vvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 473 VVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred EEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEe
Confidence 9999999999999987666552 22 22357899999999999998766666655
No 93
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=3e-28 Score=243.68 Aligned_cols=348 Identities=16% Similarity=0.193 Sum_probs=218.0
Q ss_pred CCCHHHHhHHHhHh----cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.|++||.+++.++. ++.++||...+|.|||+.++..+....... +....+|||||. ++..||.+++.+|
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~------~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYR------GITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhc------CCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 49999999998875 577899999999999998766544332211 223458999997 7889999999998
Q ss_pred hcccCceeeEEEeCCcchhHHHH---HhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHH
Q 013392 117 LHRFHWIVPGYVMGGENRSKEKA---RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193 (444)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~ 193 (444)
.+. .....+.+......... ....+.+|+|+|++++......... -.+++||+||+|++.+. .......
T Consensus 242 ~p~---l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k---~~W~~VIvDEAHrIKN~--~Sklska 313 (1033)
T PLN03142 242 CPV---LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKR---FSWRYIIIDEAHRIKNE--NSLLSKT 313 (1033)
T ss_pred CCC---CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhcc---CCCCEEEEcCccccCCH--HHHHHHH
Confidence 753 33344444333222211 1234588999999998764332222 26789999999987653 2233444
Q ss_pred HHHhcCCCCCCCCCCCcccccceeEEEEEeecc-hhhHHHHHhh-cCCCeEEcccC------------------------
Q 013392 194 LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN-EKVNHLAKIS-LETPVLIGLDE------------------------ 247 (444)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~-~~~~~~~~~~-~~~~~~~~~~~------------------------ 247 (444)
+..+. ....+++|+||- +....+..+. +-.|..+....
T Consensus 314 lr~L~----------------a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~ 377 (1033)
T PLN03142 314 MRLFS----------------TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKV 377 (1033)
T ss_pred HHHhh----------------cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHH
Confidence 44443 334578899984 3333333221 11221111000
Q ss_pred --------------cCCCCCcccccccCcc---ccccccccCCCc-cccccCcc-------ccccccceeeE--------
Q 013392 248 --------------KKLPEDKSHVRFGSLE---SDVKEEVEHPST-TMRSTTED-------FKLPAQLVQRY-------- 294 (444)
Q Consensus 248 --------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~-------- 294 (444)
..+|.......+..+. ............ ........ ..+.....+-+
T Consensus 378 L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~ 457 (1033)
T PLN03142 378 LRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPG 457 (1033)
T ss_pred hhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhccccc
Confidence 0001000000000000 000000000000 00000000 00000000000
Q ss_pred -------EEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEe
Q 013392 295 -------VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLH 367 (444)
Q Consensus 295 -------~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (444)
..+..+.|+..+..++..+. ..+.++|||+........+.++|... ++..+.++
T Consensus 458 ~~~~~~e~lie~SgKl~lLdkLL~~Lk--~~g~KVLIFSQft~~LdiLed~L~~~-----------------g~~y~rId 518 (1033)
T PLN03142 458 PPYTTGEHLVENSGKMVLLDKLLPKLK--ERDSRVLIFSQMTRLLDILEDYLMYR-----------------GYQYCRID 518 (1033)
T ss_pred CcccchhHHhhhhhHHHHHHHHHHHHH--hcCCeEEeehhHHHHHHHHHHHHHHc-----------------CCcEEEEC
Confidence 01223567777777777763 45789999999999999998888765 88999999
Q ss_pred cCCCHHHHHHHHHHhhcCC---CcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccc
Q 013392 368 GNMKQEDRRTTFGAFKTEK---KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIP 438 (444)
Q Consensus 368 ~~~~~~~r~~~~~~f~~g~---~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~ 438 (444)
|+++..+|..+++.|.... ..+|++|.+++.|+|+..+++||+|+++||+....|++||++|.||+..+..
T Consensus 519 Gsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~V 592 (1033)
T PLN03142 519 GNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQV 592 (1033)
T ss_pred CCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEE
Confidence 9999999999999997532 3578999999999999999999999999999999999999999999876543
No 94
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=9.2e-28 Score=231.95 Aligned_cols=377 Identities=16% Similarity=0.147 Sum_probs=227.8
Q ss_pred HHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHH
Q 013392 29 LCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (444)
Q Consensus 29 i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q 108 (444)
+.+.....+|.. |++.|.-+.-.+..|+ |..+.||+|||+++.++++..... |..|-+++|+..|+.|
T Consensus 69 vrEa~~R~~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~---------G~~v~vvT~neyLA~R 136 (796)
T PRK12906 69 AREGAKRVLGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT---------GKGVHVVTVNEYLSSR 136 (796)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc---------CCCeEEEeccHHHHHh
Confidence 345555566886 9999998887777776 999999999999999999888766 6679999999999999
Q ss_pred HHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHH-HHHhc-----cCccccCCccEEEEechhHhh
Q 013392 109 VYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLL-DHLKH-----TSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~-~~l~~-----~~~~~~~~~~lvV~DE~h~~~ 182 (444)
.++++..++..++..+ ..+.++...... +....++|+++|...+- ++|+. ........+.+.|+||+|+++
T Consensus 137 d~e~~~~~~~~LGl~v-g~i~~~~~~~~r--~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 137 DATEMGELYRWLGLTV-GLNLNSMSPDEK--RAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred hHHHHHHHHHhcCCeE-EEeCCCCCHHHH--HHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 9999999998887444 445444333332 33346799999987653 23332 122234578899999999853
Q ss_pred hcc----------------hhHHHHHHHHHhcCCCC--CCCC--CCCcccccceeEEEEEe-------------------
Q 013392 183 ELG----------------FGKEIEEILDILGSRNI--GSIG--EGNEVSNVKRQNLLLSA------------------- 223 (444)
Q Consensus 183 ~~~----------------~~~~~~~~~~~l~~~~~--~~~~--~~~~~~~~~~~~i~~Sa------------------- 223 (444)
-+. ....+..+...+..... .... ...-..+...+.+.+|.
T Consensus 214 iDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~ 293 (796)
T PRK12906 214 IDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSE 293 (796)
T ss_pred eccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCch
Confidence 321 22333344443332100 0000 00000000001111110
Q ss_pred ---------------------------------------ec------chhhHHHHHhhcC---CC---eEEcccCcCCCC
Q 013392 224 ---------------------------------------TL------NEKVNHLAKISLE---TP---VLIGLDEKKLPE 252 (444)
Q Consensus 224 ---------------------------------------t~------~~~~~~~~~~~~~---~~---~~~~~~~~~~~~ 252 (444)
-+ +.....+....-+ .+ ..-.++...+..
T Consensus 294 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr 373 (796)
T PRK12906 294 NTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFR 373 (796)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHH
Confidence 00 0000000000000 00 000000000000
Q ss_pred Ccccc-cc-cCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccc
Q 013392 253 DKSHV-RF-GSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD 330 (444)
Q Consensus 253 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~ 330 (444)
.+..+ .+ +.......+-.......+...+.+...........+......|...+...+.... ..+.|+||||+++.
T Consensus 374 ~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~--~~g~pvLI~t~si~ 451 (796)
T PRK12906 374 MYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERH--AKGQPVLVGTVAIE 451 (796)
T ss_pred hcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCcHH
Confidence 00000 00 0000000000000000000111111111111122333445668888888887653 56789999999999
Q ss_pred hhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCC---CCc-
Q 013392 331 AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP---KVK- 406 (444)
Q Consensus 331 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~---~~~- 406 (444)
.++.++..|.+. +++...+|+++...++..+.+.++.|. |+|||+++++|.||+ ++.
T Consensus 452 ~se~ls~~L~~~-----------------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~ 512 (796)
T PRK12906 452 SSERLSHLLDEA-----------------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKE 512 (796)
T ss_pred HHHHHHHHHHHC-----------------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhh
Confidence 999999999987 889999999999888888888888775 999999999999994 888
Q ss_pred ----EEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 407 ----CIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 407 ----~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+||++..|.|.+.|.|+.||+||.|.+|.+..|+.
T Consensus 513 ~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~s 551 (796)
T PRK12906 513 LGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLS 551 (796)
T ss_pred hCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEe
Confidence 99999999999999999999999999999988875
No 95
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=2.3e-27 Score=240.82 Aligned_cols=303 Identities=19% Similarity=0.243 Sum_probs=198.6
Q ss_pred HhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeE
Q 013392 47 AQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPG 126 (444)
Q Consensus 47 ~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~ 126 (444)
.+.+..+.+++.++|+|+||||||...-..++. . .. +...++++.-|++.-+...++.+.+..+..-+...+
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle-~-~~------~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VG 144 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLE-L-GR------GSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVG 144 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHH-c-CC------CCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEe
Confidence 567777777888999999999999854322222 1 10 112345666699888888887777654321111111
Q ss_pred EEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhH-hhhcchhHH-HHHHHHHhcCCCCCC
Q 013392 127 YVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR-ILELGFGKE-IEEILDILGSRNIGS 204 (444)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~-~~~~~~~~~-~~~~~~~l~~~~~~~ 204 (444)
... .... ....++.|.|+|+..|+..+.... .++.+++||+||+|+ .++..+.-. +..++...+
T Consensus 145 Y~v---R~~~---~~s~~T~I~~~TdGiLLr~l~~d~--~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rp------ 210 (1283)
T TIGR01967 145 YKV---RFHD---QVSSNTLVKLMTDGILLAETQQDR--FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRP------ 210 (1283)
T ss_pred eEE---cCCc---ccCCCceeeeccccHHHHHhhhCc--ccccCcEEEEcCcchhhccchhHHHHHHHHHhhCC------
Confidence 111 1111 113456899999999999887533 367999999999994 555444322 333332221
Q ss_pred CCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccc
Q 013392 205 IGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDF 284 (444)
Q Consensus 205 ~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (444)
..+++++|||++. ..+...+...|. +.+.....+ +.
T Consensus 211 ----------dLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr~~P-----Ve-------------------------- 246 (1283)
T TIGR01967 211 ----------DLKIIITSATIDP--ERFSRHFNNAPI-IEVSGRTYP-----VE-------------------------- 246 (1283)
T ss_pred ----------CCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCCccc-----ce--------------------------
Confidence 6789999999964 456665544443 222221110 00
Q ss_pred cccccceeeEEEcC------CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhh
Q 013392 285 KLPAQLVQRYVKVP------CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLF 358 (444)
Q Consensus 285 ~~~~~~~~~~~~~~------~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 358 (444)
..+.... ...+...+...+..... ...+.+|||+++..+++.+.+.|.+...
T Consensus 247 -------v~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~~-------------- 304 (1283)
T TIGR01967 247 -------VRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILRKRNL-------------- 304 (1283)
T ss_pred -------eEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcCC--------------
Confidence 0000000 11233444444544432 2457999999999999999999986521
Q ss_pred hccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCC------------------Ccchh
Q 013392 359 LRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG------------------EATEY 420 (444)
Q Consensus 359 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~------------------s~~~~ 420 (444)
.+..+..+||.++.++|.++++.+ +..+|||||+++++|+|+|++++||+++.++ |..+|
T Consensus 305 ~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa 382 (1283)
T TIGR01967 305 RHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASA 382 (1283)
T ss_pred CCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHH
Confidence 145688999999999999986653 3468999999999999999999999998443 45689
Q ss_pred hhcccccccCCCcccccceE
Q 013392 421 VHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 421 ~Q~~GR~~R~g~~g~~~~~i 440 (444)
.||.||+||.| +|.||.+.
T Consensus 383 ~QRaGRAGR~~-~G~cyRLy 401 (1283)
T TIGR01967 383 NQRKGRCGRVA-PGICIRLY 401 (1283)
T ss_pred HHHhhhhCCCC-CceEEEec
Confidence 99999999997 99988764
No 96
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6.4e-27 Score=227.10 Aligned_cols=338 Identities=15% Similarity=0.125 Sum_probs=227.9
Q ss_pred HHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHH
Q 013392 31 DQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (444)
Q Consensus 31 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 110 (444)
++....+|.. |++.|.-+.-.+..|+ |..+.||+|||+++.+|++..... +..|-+++|+..|+.|.+
T Consensus 72 Ea~~R~lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~IvTpn~yLA~rd~ 139 (830)
T PRK12904 72 EASKRVLGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT---------GKGVHVVTVNDYLAKRDA 139 (830)
T ss_pred HHHHHHhCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHHH
Confidence 4444455886 9999998887776665 999999999999999999754444 334889999999999999
Q ss_pred HHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHH-HHHHhccCc-----cccCCccEEEEechhHhhhc
Q 013392 111 EILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSS-----FLHTNLRWIIFDEADRILEL 184 (444)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~~~-----~~~~~~~lvV~DE~h~~~~~ 184 (444)
+++..++..++ +...++.++......... ..++|+++||..+ ++++...-. .....+.++|+||+|+++-+
T Consensus 140 e~~~~l~~~LG-lsv~~i~~~~~~~er~~~--y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLID 216 (830)
T PRK12904 140 EWMGPLYEFLG-LSVGVILSGMSPEERREA--YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILID 216 (830)
T ss_pred HHHHHHHhhcC-CeEEEEcCCCCHHHHHHh--cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheec
Confidence 99999998777 444566666555544443 3489999999999 888875321 24567899999999986432
Q ss_pred c----------------hhHHHHHHHHHhcCCCCCCCC-CCC-------------------c------------------
Q 013392 185 G----------------FGKEIEEILDILGSRNIGSIG-EGN-------------------E------------------ 210 (444)
Q Consensus 185 ~----------------~~~~~~~~~~~l~~~~~~~~~-~~~-------------------~------------------ 210 (444)
. ....+..+...+.....-... ... .
T Consensus 217 eArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~ 296 (830)
T PRK12904 217 EARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALR 296 (830)
T ss_pred cCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHH
Confidence 1 223344444444221000000 000 0
Q ss_pred ----------------------------------------------------------------ccccceeEEEEEeecc
Q 013392 211 ----------------------------------------------------------------VSNVKRQNLLLSATLN 226 (444)
Q Consensus 211 ----------------------------------------------------------------~~~~~~~~i~~Sat~~ 226 (444)
.-.....+.++|+|..
T Consensus 297 A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~ 376 (830)
T PRK12904 297 AHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTAD 376 (830)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcH
Confidence 0000012222333322
Q ss_pred hhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHH
Q 013392 227 EKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVL 306 (444)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 306 (444)
.....+...+.-+ +...+.+.........-.+......|...+
T Consensus 377 te~~E~~~iY~l~-------------------------------------vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI 419 (830)
T PRK12904 377 TEAEEFREIYNLD-------------------------------------VVVIPTNRPMIRIDHPDLIYKTEKEKFDAV 419 (830)
T ss_pred HHHHHHHHHhCCC-------------------------------------EEEcCCCCCeeeeeCCCeEEECHHHHHHHH
Confidence 2222222211111 011111111111111223344566788888
Q ss_pred HHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCC
Q 013392 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK 386 (444)
Q Consensus 307 ~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 386 (444)
...+.+.. ..+.|+||||++++.++.++..|.+. +++...+|+. +.+|+..+.+|..+.
T Consensus 420 ~~~I~~~~--~~grpVLIft~Si~~se~Ls~~L~~~-----------------gi~~~vLnak--q~eREa~Iia~Ag~~ 478 (830)
T PRK12904 420 VEDIKERH--KKGQPVLVGTVSIEKSELLSKLLKKA-----------------GIPHNVLNAK--NHEREAEIIAQAGRP 478 (830)
T ss_pred HHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-----------------CCceEeccCc--hHHHHHHHHHhcCCC
Confidence 88887753 45789999999999999999999987 8889999995 778999999999999
Q ss_pred CcEEEEecccccCCCCCCC--------------------------------------cEEEEccCCCCcchhhhcccccc
Q 013392 387 KALLLSTDVAARGLDFPKV--------------------------------------KCIIQYDSAGEATEYVHRYLKHL 428 (444)
Q Consensus 387 ~~iLi~t~~~~~G~di~~~--------------------------------------~~vi~~~~~~s~~~~~Q~~GR~~ 428 (444)
..|+|||+++++|+|++-- =+||.-..+.|.+---|-.||+|
T Consensus 479 g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRag 558 (830)
T PRK12904 479 GAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSG 558 (830)
T ss_pred ceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccc
Confidence 9999999999999999532 14566667888888899999999
Q ss_pred cCCCcccccceEE
Q 013392 429 PVGNFYFNIPLIV 441 (444)
Q Consensus 429 R~g~~g~~~~~i~ 441 (444)
|.|.+|.+-.|++
T Consensus 559 RQGdpGss~f~lS 571 (830)
T PRK12904 559 RQGDPGSSRFYLS 571 (830)
T ss_pred cCCCCCceeEEEE
Confidence 9999999988775
No 97
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.1e-26 Score=196.85 Aligned_cols=296 Identities=18% Similarity=0.236 Sum_probs=201.5
Q ss_pred CCCHHHHhHHHhHh----cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.+++.|+.+-..+. +.++.+++|-||+|||.+....+.+.+. .|.++.+..|+.+.|.+.+.+++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~---------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN---------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh---------cCCeEEEecCcccchHHHHHHHHHh
Confidence 49999988776655 6789999999999999876666555553 4778999999999999999999998
Q ss_pred hcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHH
Q 013392 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196 (444)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~ 196 (444)
+.. ..+..+++++..... ..++|+|...|+++-. .++++|+||+|.+.-. ....+...++.
T Consensus 168 F~~---~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~--------aFD~liIDEVDAFP~~-~d~~L~~Av~~ 228 (441)
T COG4098 168 FSN---CDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ--------AFDLLIIDEVDAFPFS-DDQSLQYAVKK 228 (441)
T ss_pred hcc---CCeeeEecCCchhcc-------ccEEEEehHHHHHHHh--------hccEEEEecccccccc-CCHHHHHHHHH
Confidence 764 334555554433221 3699999999888644 6899999999965322 22333333333
Q ss_pred hcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEE----cccCcCCCCCcccccccCccccccccccC
Q 013392 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI----GLDEKKLPEDKSHVRFGSLESDVKEEVEH 272 (444)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (444)
-... ....+.+|||+++..+.-..........+ .-.+-..|+-.+ .+..
T Consensus 229 ark~--------------~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w---~~~~---------- 281 (441)
T COG4098 229 ARKK--------------EGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVW---IGNW---------- 281 (441)
T ss_pred hhcc--------------cCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEE---eccH----------
Confidence 2222 55679999999987665544332211111 111111010000 0000
Q ss_pred CCccccccCccccccccceeeEEEcCCCCcH-HHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCch
Q 013392 273 PSTTMRSTTEDFKLPAQLVQRYVKVPCGSRL-AVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPD 351 (444)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~ 351 (444)
... . ...|+ ..+...|+.. ...+.+++||++++...+.++..|+..
T Consensus 282 ------------------~k~---l-~r~kl~~kl~~~lekq--~~~~~P~liF~p~I~~~eq~a~~lk~~--------- 328 (441)
T COG4098 282 ------------------NKK---L-QRNKLPLKLKRWLEKQ--RKTGRPVLIFFPEIETMEQVAAALKKK--------- 328 (441)
T ss_pred ------------------HHH---h-hhccCCHHHHHHHHHH--HhcCCcEEEEecchHHHHHHHHHHHhh---------
Confidence 000 0 01111 2445555544 245689999999999999999999654
Q ss_pred HHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEcc--CCCCcchhhhccccccc
Q 013392 352 MELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD--SAGEATEYVHRYLKHLP 429 (444)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~--~~~s~~~~~Q~~GR~~R 429 (444)
++...++.+|+ ....|.+..++|++|+.++||+|.++++|+.+|++++.+.-. ...+...++|..||+||
T Consensus 329 ------~~~~~i~~Vhs--~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGR 400 (441)
T COG4098 329 ------LPKETIASVHS--EDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGR 400 (441)
T ss_pred ------CCccceeeeec--cCccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccC
Confidence 23555666776 456788999999999999999999999999999999988754 33678899999999999
Q ss_pred CCC
Q 013392 430 VGN 432 (444)
Q Consensus 430 ~g~ 432 (444)
.-.
T Consensus 401 s~~ 403 (441)
T COG4098 401 SLE 403 (441)
T ss_pred CCc
Confidence 654
No 98
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=221.47 Aligned_cols=364 Identities=20% Similarity=0.167 Sum_probs=240.8
Q ss_pred HHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHH
Q 013392 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (444)
Q Consensus 35 ~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~ 114 (444)
+.|.|. |-|+|..|+..+-++..+++.|.|.+|||.+|-.++...+.. ..+||+-.|-++|-+|-++++.
T Consensus 124 k~YPF~-LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~ 193 (1041)
T KOG0948|consen 124 KTYPFT-LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELL 193 (1041)
T ss_pred cCCCcc-cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHH
Confidence 556786 999999999999999999999999999999999988887765 5679999999999999999999
Q ss_pred HHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHH
Q 013392 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194 (444)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~ 194 (444)
.-+++.+.. +|+... ...+.-+|+|.+.|.+++.+... .+..+.+|||||+|.|-+...+-.+++-.
T Consensus 194 ~EF~DVGLM-----TGDVTI-------nP~ASCLVMTTEILRsMLYRGSE-vmrEVaWVIFDEIHYMRDkERGVVWEETI 260 (1041)
T KOG0948|consen 194 EEFKDVGLM-----TGDVTI-------NPDASCLVMTTEILRSMLYRGSE-VMREVAWVIFDEIHYMRDKERGVVWEETI 260 (1041)
T ss_pred HHhccccee-----ecceee-------CCCCceeeeHHHHHHHHHhccch-HhheeeeEEeeeehhccccccceeeeeeE
Confidence 887765532 222221 23346899999999999987433 45789999999999998887777777766
Q ss_pred HHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHh---hcCCCeEEcccCcCCCCCcccccccCcccc-ccccc
Q 013392 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKI---SLETPVLIGLDEKKLPEDKSHVRFGSLESD-VKEEV 270 (444)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 270 (444)
-.++. +.+.+++|||+|+..+...|. .-.....+..+-.+-|-..+..+.+..+-. ..+..
T Consensus 261 IllP~---------------~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek 325 (1041)
T KOG0948|consen 261 ILLPD---------------NVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEK 325 (1041)
T ss_pred Eeccc---------------cceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecc
Confidence 66666 889999999999977664442 222333333333333333333332221100 00000
Q ss_pred cCCCcc-----ccccCcccccc--ccceee------EEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhh
Q 013392 271 EHPSTT-----MRSTTEDFKLP--AQLVQR------YVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (444)
Q Consensus 271 ~~~~~~-----~~~~~~~~~~~--~~~~~~------~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~ 337 (444)
..-.+. +.......... ..-... .-.-+..+....+..++-. ....|+|||+=++++|+.++-
T Consensus 326 ~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~----~~~~PVIvFSFSkkeCE~~Al 401 (1041)
T KOG0948|consen 326 GKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME----RNYLPVIVFSFSKKECEAYAL 401 (1041)
T ss_pred cccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHh----hcCCceEEEEecHhHHHHHHH
Confidence 000000 00000000000 000000 0011222333333333322 456799999999999999998
Q ss_pred hhhhcccCCCCCc----------------------hHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecc
Q 013392 338 LLSEFQWSPHSQP----------------------DMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV 395 (444)
Q Consensus 338 ~l~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~ 395 (444)
.+.+.-.+..+-. ..+-..-.+...+.++|+++-+--++-+.=.|++|-+++|+||.+
T Consensus 402 qm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATET 481 (1041)
T KOG0948|consen 402 QMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATET 481 (1041)
T ss_pred hhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhh
Confidence 8876654422111 000111134667788999998888888888899999999999999
Q ss_pred cccCCCCCCCcEEEEc----cCC----CCcchhhhcccccccCCCcccccceE
Q 013392 396 AARGLDFPKVKCIIQY----DSA----GEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 396 ~~~G~di~~~~~vi~~----~~~----~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
++.|+|+|.-++|+-- |.- -|-..|+|+.||+||.|.+.-+++++
T Consensus 482 FsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIl 534 (1041)
T KOG0948|consen 482 FSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVIL 534 (1041)
T ss_pred hhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEE
Confidence 9999999987777642 211 14568999999999999765555554
No 99
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.95 E-value=7.4e-27 Score=220.40 Aligned_cols=337 Identities=18% Similarity=0.154 Sum_probs=205.1
Q ss_pred CCCHHHHhHHHhHh----cC-CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVIL----SG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~-~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
.+|.||..|+..+. +| +.++++++||+|||.+|+..+...+.. +.-++||||+.+++|+.|....+..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~-------~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKS-------GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhc-------chhheeeEEechHHHHHHHHHHHHH
Confidence 48999999987755 33 459999999999999988776666655 5567799999999999999999998
Q ss_pred HhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhcc-C---ccccCCccEEEEechhHhhhcchhHHHH
Q 013392 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT-S---SFLHTNLRWIIFDEADRILELGFGKEIE 191 (444)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~-~---~~~~~~~~lvV~DE~h~~~~~~~~~~~~ 191 (444)
+.+.-.... ...+.... ..++|.++|++++....... . .+.-..+++||+||||+-.-. ...
T Consensus 238 ~~P~~~~~n---~i~~~~~~-------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~----~~~ 303 (875)
T COG4096 238 FLPFGTKMN---KIEDKKGD-------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS----EWS 303 (875)
T ss_pred hCCCcccee---eeecccCC-------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh----hhH
Confidence 876432111 11111111 14689999999999987764 1 233355899999999985433 333
Q ss_pred HHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhc-CCCeEEcccCcCCCCCcccccccCccccccccc
Q 013392 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL-ETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEV 270 (444)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (444)
.++..+- .-.+++||||....+..--.++ +.|.....-...... .-.+.+..+........
T Consensus 304 ~I~dYFd-----------------A~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~D-GfLvpy~vi~i~~~~~~ 365 (875)
T COG4096 304 SILDYFD-----------------AATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVED-GFLVPYKVIRIDTDFDL 365 (875)
T ss_pred HHHHHHH-----------------HHHHhhccCcccccccccccccCCCcceeecHHHHhhc-cccCCCCceEEeeeccc
Confidence 4444432 2224558998663333222222 444332211111100 00000111100000000
Q ss_pred cCCCccccc--cCccccccccceeeEE------EcCCCCcHHHHHHHHHhhccc--cc--CceEEEEecccchhhhhhhh
Q 013392 271 EHPSTTMRS--TTEDFKLPAQLVQRYV------KVPCGSRLAVLLSILKHLFDT--EV--SQKLVVFFSTCDAVDFHYSL 338 (444)
Q Consensus 271 ~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~k~~~l~~~l~~~~~~--~~--~~~~ivf~~~~~~~~~l~~~ 338 (444)
........+ ..........-.+.+. ..........+...+.+++.. .. ..|+||||.+..||+.+...
T Consensus 366 ~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~ 445 (875)
T COG4096 366 DGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREA 445 (875)
T ss_pred cCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHH
Confidence 000000000 0000000000001111 112234556667777777655 22 46999999999999999999
Q ss_pred hhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhc--CCCcEEEEecccccCCCCCCCcEEEEccCCCC
Q 013392 339 LSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT--EKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (444)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s 416 (444)
|....... .+.-+..++++.... +..++.|.. ...+|.|+.+++..|+|+|.|..++++....|
T Consensus 446 ~~~~ype~------------~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrS 511 (875)
T COG4096 446 LVNEYPEY------------NGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRS 511 (875)
T ss_pred HHHhCccc------------cCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhh
Confidence 98764321 144466677755443 344555554 34789999999999999999999999999999
Q ss_pred cchhhhcccccccC
Q 013392 417 ATEYVHRYLKHLPV 430 (444)
Q Consensus 417 ~~~~~Q~~GR~~R~ 430 (444)
...|.|++||+-|.
T Consensus 512 ktkF~QMvGRGTRl 525 (875)
T COG4096 512 KTKFKQMVGRGTRL 525 (875)
T ss_pred HHHHHHHhcCcccc
Confidence 99999999999993
No 100
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.95 E-value=1.1e-26 Score=228.72 Aligned_cols=355 Identities=17% Similarity=0.120 Sum_probs=201.4
Q ss_pred CCHHHHhHHHhHh----c------CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHH
Q 013392 42 PTKVQAQAIPVIL----S------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (444)
Q Consensus 42 ~~~~Q~~~~~~~~----~------~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 111 (444)
++++|.+|+..+. . .+..+++++||||||++++..+...+.. ...+++|||+|+.+|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-------~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-------LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-------cCCCeEEEEECcHHHHHHHHH
Confidence 7999999988765 2 2578999999999999988877665532 346789999999999999999
Q ss_pred HHHHHhcccCceeeEEEeCCcchhHHHHHhc-CCCcEEEeCchHHHHHHhcc-CccccCCc-cEEEEechhHhhhcchhH
Q 013392 112 ILHKLLHRFHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHT-SSFLHTNL-RWIIFDEADRILELGFGK 188 (444)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~l~~~-~~~~~~~~-~lvV~DE~h~~~~~~~~~ 188 (444)
.+..+..... ....+.......+. ...+|+|+|.+++...+... ..+..... .+||+||||+.....+..
T Consensus 312 ~f~~~~~~~~-------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~ 384 (667)
T TIGR00348 312 EFQSLQKDCA-------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAK 384 (667)
T ss_pred HHHhhCCCCC-------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHH
Confidence 9999753210 11112222333333 23689999999998744321 11211111 289999999865433332
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHH--HHHhh--cCCCeEEcccCcCCCCCcccccccCccc
Q 013392 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH--LAKIS--LETPVLIGLDEKKLPEDKSHVRFGSLES 264 (444)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (444)
. +...++ ....++|||||-..... ..... .+.+... ........+...+++.+...
T Consensus 385 ~---l~~~~p----------------~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI~dG~~~~i~Y~~~ 444 (667)
T TIGR00348 385 N---LKKALK----------------NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAIRDGLTVKIDYEDR 444 (667)
T ss_pred H---HHhhCC----------------CCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHhhcCCeeeEEEEec
Confidence 2 223333 56889999998542111 11100 1122111 11111111111111111110
Q ss_pred cccccccCCC------ccccccCcc--ccccccceeeE----EEcCCCCcHHHHHHHHHhhcc---cccCceEEEEeccc
Q 013392 265 DVKEEVEHPS------TTMRSTTED--FKLPAQLVQRY----VKVPCGSRLAVLLSILKHLFD---TEVSQKLVVFFSTC 329 (444)
Q Consensus 265 ~~~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~----~~~~~~~k~~~l~~~l~~~~~---~~~~~~~ivf~~~~ 329 (444)
.......... ......... ......+...+ .....+.....+...+.+++. ...+.+++|+|.++
T Consensus 445 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr 524 (667)
T TIGR00348 445 LPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISR 524 (667)
T ss_pred chhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecH
Confidence 0000000000 000000000 00000000000 011122333333443333331 12348999999999
Q ss_pred chhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHH---------------------HHHHHHHHhhc-CCC
Q 013392 330 DAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQE---------------------DRRTTFGAFKT-EKK 387 (444)
Q Consensus 330 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~r~~~~~~f~~-g~~ 387 (444)
.+|..+.+.+.+...... +.....+++..+.. ...+++++|++ +..
T Consensus 525 ~~a~~~~~~l~~~~~~~~------------~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~ 592 (667)
T TIGR00348 525 YACVEEKNALDEELNEKF------------EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENP 592 (667)
T ss_pred HHHHHHHHHHHhhccccc------------CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCc
Confidence 999999998876532211 12333444432221 23478888976 678
Q ss_pred cEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEEee
Q 013392 388 ALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIVCF 443 (444)
Q Consensus 388 ~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~~~ 443 (444)
+|||+++++.+|+|.|.++.++...+..+ ..++|.+||+.|.-.+|+-.++|++|
T Consensus 593 ~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvDy 647 (667)
T TIGR00348 593 KLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVDY 647 (667)
T ss_pred eEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEEC
Confidence 99999999999999999999998887665 45899999999954557777888887
No 101
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.1e-25 Score=218.04 Aligned_cols=373 Identities=16% Similarity=0.148 Sum_probs=224.7
Q ss_pred HHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHH
Q 013392 32 QLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (444)
Q Consensus 32 ~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 111 (444)
......|.. |++.|..+--.+..|+ |..++||.|||+++++|++..... +..|.||+|+..|+.|-++
T Consensus 74 aa~R~lgm~-~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e 141 (908)
T PRK13107 74 ASKRVFEMR-HFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAE 141 (908)
T ss_pred HHHHHhCCC-cCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHH
Confidence 333445775 8888887766665554 999999999999999999887765 4449999999999999999
Q ss_pred HHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHH-HHHHhccCcc-----ccCCccEEEEechhHhhhcc
Q 013392 112 ILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSSF-----LHTNLRWIIFDEADRILELG 185 (444)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~~~~-----~~~~~~lvV~DE~h~~~~~~ 185 (444)
++..++..++..+ .++.++... .......+++|+++||..+ ++++...-.. ....+.++|+||+|.++-+.
T Consensus 142 ~m~~l~~~lGlsv-~~i~~~~~~--~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDE 218 (908)
T PRK13107 142 NNRPLFEFLGLTV-GINVAGLGQ--QEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDE 218 (908)
T ss_pred HHHHHHHhcCCeE-EEecCCCCH--HHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcccc
Confidence 9999998877444 444444443 2333344789999999999 8887763122 23678999999999875442
Q ss_pred ----------------hhHHHHHHHHHhcCCCCC----CCCCCCcccccceeEEEEEeecchhh----------------
Q 013392 186 ----------------FGKEIEEILDILGSRNIG----SIGEGNEVSNVKRQNLLLSATLNEKV---------------- 229 (444)
Q Consensus 186 ----------------~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~i~~Sat~~~~~---------------- 229 (444)
....+..+...+...... ......-..+...+.+.+|-.-....
T Consensus 219 ArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l 298 (908)
T PRK13107 219 ARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSL 298 (908)
T ss_pred CCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccc
Confidence 122223333333210000 00000000000111111110000000
Q ss_pred --------HHHHH-------hhcCC-------C---------------------------------------eEEcccCc
Q 013392 230 --------NHLAK-------ISLET-------P---------------------------------------VLIGLDEK 248 (444)
Q Consensus 230 --------~~~~~-------~~~~~-------~---------------------------------------~~~~~~~~ 248 (444)
..... ++..+ . ..-.++..
T Consensus 299 ~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Q 378 (908)
T PRK13107 299 YSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQ 378 (908)
T ss_pred cCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHH
Confidence 00000 00000 0 00000000
Q ss_pred CCCCCcccc-cc-cCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEe
Q 013392 249 KLPEDKSHV-RF-GSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFF 326 (444)
Q Consensus 249 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~ 326 (444)
.+...+..+ .+ +.......+-.......+.....+.........-.+......|...+...+.+.. ..+.++||||
T Consensus 379 nfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~--~~GrpVLV~t 456 (908)
T PRK13107 379 NYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCR--ERGQPVLVGT 456 (908)
T ss_pred HHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHH--HcCCCEEEEe
Confidence 000000000 00 0000000000011111111111111111122222334455778888888887774 5688999999
Q ss_pred cccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCc
Q 013392 327 STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVK 406 (444)
Q Consensus 327 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~ 406 (444)
.++..++.++.+|... +++...+|++.++.++..+.+.|+.|. |+|||+++++|.|+. +.
T Consensus 457 ~sv~~se~ls~~L~~~-----------------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIk-Lg 516 (908)
T PRK13107 457 VSIEQSELLARLMVKE-----------------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIV-LG 516 (908)
T ss_pred CcHHHHHHHHHHHHHC-----------------CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCccee-cC
Confidence 9999999999999987 889999999999999999999999996 999999999999994 22
Q ss_pred --------------------------------------EEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 407 --------------------------------------CIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 407 --------------------------------------~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+||--..+.|.+-=-|-.||+||.|.+|.+..|++
T Consensus 517 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lS 589 (908)
T PRK13107 517 GNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLS 589 (908)
T ss_pred CchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEE
Confidence 46666677788888999999999999999988775
No 102
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=1.1e-26 Score=221.47 Aligned_cols=369 Identities=17% Similarity=0.159 Sum_probs=233.4
Q ss_pred CCHHHHHHHHHHcCCCCCCHHHHhHH--HhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 25 LHSTLCDQLRERLGFEAPTKVQAQAI--PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 25 l~~~i~~~l~~~~~~~~~~~~Q~~~~--~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
+++...+...+..|+..+..||.+++ +.++.+++.|..+||+.|||+++-+.++...... ++.++++.|.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--------rr~~llilp~ 278 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--------RRNVLLILPY 278 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--------hhceeEecce
Confidence 44555555546669999999999987 5577889999999999999999999998888764 4449999999
Q ss_pred HHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhcc-CccccCCccEEEEechhHh
Q 013392 103 RELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT-SSFLHTNLRWIIFDEADRI 181 (444)
Q Consensus 103 ~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~-~~~~~~~~~lvV~DE~h~~ 181 (444)
.+.+..-...+..++...+..+.... +..... .....-.+.|||.++-..++.+. +.-.++.+++||+||.|.+
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~-g~~~p~----~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi 353 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYA-GRFPPE----KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMI 353 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhc-ccCCCC----CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeee
Confidence 99999999999999888775544333 222111 11223469999999765544321 1123457899999999998
Q ss_pred hhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHH--HHHhhcCCCeEEcccCcCCCCCc--ccc
Q 013392 182 LELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH--LAKISLETPVLIGLDEKKLPEDK--SHV 257 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~ 257 (444)
.+.+.+..++.++..+...+... ..|++++|||+++...- +........ .+.+..+.... ...
T Consensus 354 ~d~~rg~~lE~~l~k~~y~~~~~----------~~~iIGMSATi~N~~lL~~~L~A~~y~t---~fRPv~L~E~ik~G~~ 420 (1008)
T KOG0950|consen 354 GDKGRGAILELLLAKILYENLET----------SVQIIGMSATIPNNSLLQDWLDAFVYTT---RFRPVPLKEYIKPGSL 420 (1008)
T ss_pred eccccchHHHHHHHHHHHhcccc----------ceeEeeeecccCChHHHHHHhhhhheec---ccCcccchhccCCCcc
Confidence 88888888888887665433222 47899999999874322 222111100 01111110000 000
Q ss_pred cccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhh
Q 013392 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (444)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~ 337 (444)
.+........ ..+...+.........+.+..+..+. ...+..+||||+++..|+.++.
T Consensus 421 i~~~~r~~~l--------------------r~ia~l~~~~~g~~dpD~~v~L~tet--~~e~~~~lvfc~sk~~ce~~a~ 478 (1008)
T KOG0950|consen 421 IYESSRNKVL--------------------REIANLYSSNLGDEDPDHLVGLCTET--APEGSSVLVFCPSKKNCENVAS 478 (1008)
T ss_pred cccchhhHHH--------------------HHhhhhhhhhcccCCCcceeeehhhh--hhcCCeEEEEcCcccchHHHHH
Confidence 0000000000 00000000000001112222222222 1334579999999999999886
Q ss_pred hhhhcccCCCCCc---h-HHH-----------------HHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEeccc
Q 013392 338 LLSEFQWSPHSQP---D-MEL-----------------KQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA 396 (444)
Q Consensus 338 ~l~~~~~~~~~~~---~-~~~-----------------~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~ 396 (444)
.+...-....... . ++. ......+.++.+|.+++.++|+.+...|+.|.+.|++||+++
T Consensus 479 ~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTl 558 (1008)
T KOG0950|consen 479 LIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTL 558 (1008)
T ss_pred HHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchh
Confidence 5543321111000 0 000 111235577889999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEcc----CCCCcchhhhcccccccCCCcccccceEE
Q 013392 397 ARGLDFPKVKCIIQYD----SAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 397 ~~G~di~~~~~vi~~~----~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
..|+++|..++++-.- ...+...|.||+||+||+|-.-.+=+|++
T Consensus 559 aaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI 607 (1008)
T KOG0950|consen 559 AAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILI 607 (1008)
T ss_pred hccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEE
Confidence 9999999999888643 33356799999999999986544444443
No 103
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=6.7e-25 Score=212.94 Aligned_cols=151 Identities=20% Similarity=0.318 Sum_probs=121.6
Q ss_pred cccCCCHHHHHHHHH----HcCCCCC---CHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCC
Q 013392 21 SSLGLHSTLCDQLRE----RLGFEAP---TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 93 (444)
Q Consensus 21 ~~~~l~~~i~~~l~~----~~~~~~~---~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~ 93 (444)
+.+.+..++++.+.. .+||..| +|+|.++++.+..+++++..++||+|||+++++|++..+.. +
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------G 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------c
Confidence 345577777777753 4588877 99999999999999999999999999999999999987754 1
Q ss_pred ceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHH-HHHHhccCcccc-----
Q 013392 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSSFLH----- 167 (444)
Q Consensus 94 ~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~~~~~~----- 167 (444)
..++||+|++.|+.|.++++..+...++ .....+.+|.........+ +++|+|+||..| ++++.. +.+..
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~lG-LsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd-~~~~~~~~~~ 211 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWLG-LTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRD-NSIATRKEEQ 211 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhC-CCCCcCHHHh
Confidence 2389999999999999999999987766 5556667777666655444 589999999999 998886 33333
Q ss_pred --CCccEEEEechhHhhhc
Q 013392 168 --TNLRWIIFDEADRILEL 184 (444)
Q Consensus 168 --~~~~lvV~DE~h~~~~~ 184 (444)
..+.++|+||||+++-+
T Consensus 212 vqr~~~~~IIDEADsmLiD 230 (970)
T PRK12899 212 VGRGFYFAIIDEVDSILID 230 (970)
T ss_pred hcccccEEEEechhhhhhh
Confidence 35689999999997543
No 104
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=3.3e-25 Score=183.59 Aligned_cols=166 Identities=36% Similarity=0.516 Sum_probs=134.7
Q ss_pred CHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCc
Q 013392 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHW 122 (444)
Q Consensus 43 ~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~ 122 (444)
+|+|.++++.+.+++++++.+|||+|||++++.+++..+.. .+..++++++|+++|+.|..+++..++... .
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~-------~~~~~~lii~P~~~l~~q~~~~~~~~~~~~-~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE-------GKDARVLIIVPTRALAEQQFERLRKFFSNT-N 72 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TSSSEEEEEESSHHHHHHHHHHHHHHTTTT-T
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc-------CCCceEEEEeeccccccccccccccccccc-c
Confidence 58999999999999999999999999999999999988876 223479999999999999999999998762 2
Q ss_pred eeeEEEeCCcchh-HHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCC
Q 013392 123 IVPGYVMGGENRS-KEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRN 201 (444)
Q Consensus 123 ~~~~~~~~~~~~~-~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~ 201 (444)
.....++++.... +....+..+++|+|+||+++...+..... .+.++++||+||+|.+....+...+..+...+....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp SSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred cccccccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 4445556666544 44445556799999999999999887333 556799999999999988777888888888875432
Q ss_pred CCCCCCCCcccccceeEEEEEeecchhhH
Q 013392 202 IGSIGEGNEVSNVKRQNLLLSATLNEKVN 230 (444)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~Sat~~~~~~ 230 (444)
+.+++++|||++...+
T Consensus 152 -------------~~~~i~~SAT~~~~~~ 167 (169)
T PF00270_consen 152 -------------NIQIILLSATLPSNVE 167 (169)
T ss_dssp -------------TSEEEEEESSSTHHHH
T ss_pred -------------CCcEEEEeeCCChhHh
Confidence 5789999999985443
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.93 E-value=3.4e-24 Score=213.32 Aligned_cols=324 Identities=19% Similarity=0.181 Sum_probs=206.6
Q ss_pred CCHHHHhHHHhHhcC---C-cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 42 PTKVQAQAIPVILSG---R-HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~---~-~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
.+++|..+++.+.+. . .+++.+|||.|||.+++.++....... . ....+++++.|.+++++++.+++.+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--~---~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--I---KLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--c---cccceEEEEccHHHHHHHHHHHHHhhh
Confidence 588999999888743 4 689999999999999999888877652 0 146779999999999999999999887
Q ss_pred cccCceeeEEEeCCcchh-HHHHH-------------hcCCCcEEEeCchHHHHHHhccCccc-c--CCccEEEEechhH
Q 013392 118 HRFHWIVPGYVMGGENRS-KEKAR-------------LRKGISILVATPGRLLDHLKHTSSFL-H--TNLRWIIFDEADR 180 (444)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~iii~T~~~l~~~l~~~~~~~-~--~~~~lvV~DE~h~ 180 (444)
......... ..+..... ..... ......+.++||............+. + -..+++||||+|.
T Consensus 271 ~~~~~~~~~-~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLFSVIGKS-LHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred ccccccccc-ccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 654322211 11111110 00000 00012244444444433222111111 0 1347999999996
Q ss_pred hhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCccccccc
Q 013392 181 ILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFG 260 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (444)
+........+..++..+... ...++++|||+|+...............+.......+.......
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~--------------g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~-- 413 (733)
T COG1203 350 YADETMLAALLALLEALAEA--------------GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGL-- 413 (733)
T ss_pred hcccchHHHHHHHHHHHHhC--------------CCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccccc--
Confidence 55543445555555555433 67899999999998888777666554444333221111000000
Q ss_pred CccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhh
Q 013392 261 SLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340 (444)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~ 340 (444)
....................... ...+.+++|.||++..|..+++.|+
T Consensus 414 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~kvlvI~NTV~~Aie~Y~~Lk 461 (733)
T COG1203 414 -----------------------------KRKERVDVEDGPQEELIELISEE---VKEGKKVLVIVNTVDRAIELYEKLK 461 (733)
T ss_pred -----------------------------ccccchhhhhhhhHhhhhcchhh---hccCCcEEEEEecHHHHHHHHHHHH
Confidence 00000000000000111111122 2567899999999999999999999
Q ss_pred hcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhh----cCCCcEEEEecccccCCCCCCCcEEEEccCCCC
Q 013392 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFK----TEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (444)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s 416 (444)
+. +..+..+|+.+...+|.++++.+. .+...|+|||++.+.|+|+ +.+.+|---.|
T Consensus 462 ~~-----------------~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mITe~aP-- 521 (733)
T COG1203 462 EK-----------------GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLITELAP-- 521 (733)
T ss_pred hc-----------------CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeeecCCC--
Confidence 86 336999999999999998888654 4678999999999999999 78888776555
Q ss_pred cchhhhcccccccCC--Ccccccce
Q 013392 417 ATEYVHRYLKHLPVG--NFYFNIPL 439 (444)
Q Consensus 417 ~~~~~Q~~GR~~R~g--~~g~~~~~ 439 (444)
++..+||+||++|.| ..|..+.+
T Consensus 522 idSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 522 IDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred HHHHHHHHHHHhhcccccCCceeEe
Confidence 888999999999999 45555443
No 106
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=3.7e-24 Score=203.65 Aligned_cols=169 Identities=22% Similarity=0.240 Sum_probs=124.8
Q ss_pred CCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
+|. |..||++.++..-.++.++|++||.+|||++...++-..++. +....||+++|+++|++|....+...+
T Consensus 509 dF~-Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe-------sD~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 509 DFC-PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE-------SDSDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred ccC-CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh-------cCCCEEEEecchHHHhhhhhHHHHHhh
Confidence 354 899999999999999999999999999999988877777766 556779999999999999998887765
Q ss_pred cccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhcc--CccccCCccEEEEechhHhhhcchhHHHHHHHH
Q 013392 118 HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT--SSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195 (444)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~--~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~ 195 (444)
.... ...++...|.-..+...+ .-+|+|+|+-|+.+...+... ...+.+.++++|+||+|.+....-+..++.++.
T Consensus 581 ~~~t-~~rg~sl~g~ltqEYsin-p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 581 DTKT-FLRGVSLLGDLTQEYSIN-PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred ccCc-cccchhhHhhhhHHhcCC-chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 3222 111222112222221111 235899999999999988763 233457899999999999887766666666665
Q ss_pred HhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHH
Q 013392 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA 233 (444)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~ 233 (444)
.. ++.++++|||+.+......
T Consensus 659 li-----------------~CP~L~LSATigN~~l~qk 679 (1330)
T KOG0949|consen 659 LI-----------------PCPFLVLSATIGNPNLFQK 679 (1330)
T ss_pred hc-----------------CCCeeEEecccCCHHHHHH
Confidence 55 7889999999987544433
No 107
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=2e-25 Score=198.17 Aligned_cols=351 Identities=15% Similarity=0.131 Sum_probs=230.7
Q ss_pred hhhhhccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcC---CcEEEEcCCCCchhHHhHHHHHHHHhccC
Q 013392 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG---RHVLVNAATGTGKTVAYLAPIINHLQSYS 85 (444)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~---~~~il~~~tG~GKT~~~~~~~~~~~~~~~ 85 (444)
+-+-++++..+|..-.+++++-..|+ .-..+||||...+..+..+ +..||+.|+|+|||++.+-++..
T Consensus 273 eidyPlLeEYDFRND~~npdl~idLK---Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t------ 343 (776)
T KOG1123|consen 273 EIDYPLLEEYDFRNDNVNPDLDIDLK---PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT------ 343 (776)
T ss_pred ccCchhhhhhccccCCCCCCCCcCcC---cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee------
Confidence 33446778888888888888877773 4456999999999999844 57899999999999987655433
Q ss_pred CCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccC--
Q 013392 86 PRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS-- 163 (444)
Q Consensus 86 ~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~-- 163 (444)
-.+.+|++|.+...+.||.+++..|..-.+ ...+.++... ......++.|+|+|+.++...-.+..
T Consensus 344 ------ikK~clvLcts~VSVeQWkqQfk~wsti~d-~~i~rFTsd~-----Ke~~~~~~gvvvsTYsMva~t~kRS~ea 411 (776)
T KOG1123|consen 344 ------IKKSCLVLCTSAVSVEQWKQQFKQWSTIQD-DQICRFTSDA-----KERFPSGAGVVVTTYSMVAYTGKRSHEA 411 (776)
T ss_pred ------ecccEEEEecCccCHHHHHHHHHhhcccCc-cceEEeeccc-----cccCCCCCcEEEEeeehhhhcccccHHH
Confidence 234499999999999999999999876433 3334443322 22345678899999987643211110
Q ss_pred -----ccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhh-c
Q 013392 164 -----SFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKIS-L 237 (444)
Q Consensus 164 -----~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~-~ 237 (444)
.+.-..|+++++||+|.+....|.+.+..+... -.+++|||+-...+.+..+. +
T Consensus 412 ek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aH--------------------cKLGLTATLvREDdKI~DLNFL 471 (776)
T KOG1123|consen 412 EKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAH--------------------CKLGLTATLVREDDKITDLNFL 471 (776)
T ss_pred HHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHH--------------------hhccceeEEeecccccccccee
Confidence 112257999999999987665455544444322 23789999866544433321 1
Q ss_pred CCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccc
Q 013392 238 ETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTE 317 (444)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 317 (444)
-.|... .+.|. .-.....-......+-++........++.....-......+.++.|.....-+|+-+ ..
T Consensus 472 IGPKlY--EAnWm------dL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~H--E~ 541 (776)
T KOG1123|consen 472 IGPKLY--EANWM------DLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFH--ER 541 (776)
T ss_pred ecchhh--hccHH------HHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHH--Hh
Confidence 111110 00010 000000000111111122111111111222223344455667788888887777655 34
Q ss_pred cCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhc-CCCcEEEEeccc
Q 013392 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT-EKKALLLSTDVA 396 (444)
Q Consensus 318 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~iLi~t~~~ 396 (444)
.+.++|||..+.-....++-.+.+- .+.|..++.+|.+|++.|+- ..++.++.+-+.
T Consensus 542 RgDKiIVFsDnvfALk~YAikl~Kp----------------------fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVg 599 (776)
T KOG1123|consen 542 RGDKIIVFSDNVFALKEYAIKLGKP----------------------FIYGPTSQNERMKILQNFQTNPKVNTIFLSKVG 599 (776)
T ss_pred cCCeEEEEeccHHHHHHHHHHcCCc----------------------eEECCCchhHHHHHHHhcccCCccceEEEeecc
Confidence 6889999999988877777666542 38899999999999999984 558889999999
Q ss_pred ccCCCCCCCcEEEEccCC-CCcchhhhcccccccCCC
Q 013392 397 ARGLDFPKVKCIIQYDSA-GEATEYVHRYLKHLPVGN 432 (444)
Q Consensus 397 ~~G~di~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~ 432 (444)
...+|+|.++++|+.... .|-+.-.||.||..|+.+
T Consensus 600 DtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 600 DTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred CccccCCcccEEEEEcccccchHHHHHHHHHHHHHhh
Confidence 999999999999987543 467788999999999764
No 108
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.1e-23 Score=201.04 Aligned_cols=331 Identities=20% Similarity=0.210 Sum_probs=218.6
Q ss_pred CCCHHHHhHHHhHhcC----CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVILSG----RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~----~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.+++-|..+++.+... ...++.|.||||||.+|+-++...+.. |..+|+++|.++|-.|+.++++..
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---------CCEEEEEeccccchHHHHHHHHHH
Confidence 5889999999998855 678999999999999999988887755 678999999999999999999998
Q ss_pred hcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcc------hhHHH
Q 013392 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG------FGKEI 190 (444)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~------~~~~~ 190 (444)
++.....-...+..+.....+.+...++.+|+|+|-..++-. ++++++||+||-|.-.-.+ +.+.+
T Consensus 269 Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~P--------f~~LGLIIvDEEHD~sYKq~~~prYhARdv 340 (730)
T COG1198 269 FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLP--------FKNLGLIIVDEEHDSSYKQEDGPRYHARDV 340 (730)
T ss_pred hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCc--------hhhccEEEEeccccccccCCcCCCcCHHHH
Confidence 874332333444445555566666778899999996666543 4589999999999743221 22333
Q ss_pred HHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccc
Q 013392 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEV 270 (444)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (444)
.-+..... ++.+|+-||||+-. ++.+...+....+.+...........+..-++..
T Consensus 341 A~~Ra~~~----------------~~pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~------ 396 (730)
T COG1198 341 AVLRAKKE----------------NAPVVLGSATPSLE--SYANAESGKYKLLRLTNRAGRARLPRVEIIDMRK------ 396 (730)
T ss_pred HHHHHHHh----------------CCCEEEecCCCCHH--HHHhhhcCceEEEEccccccccCCCcceEEeccc------
Confidence 33333332 78999999997644 3333333333333333332100000000000000
Q ss_pred cCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhccc------
Q 013392 271 EHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQW------ 344 (444)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~------ 344 (444)
.... ....-...+.+.+++.. ..+..+|+|.|.+-.+-.+..--+.+..
T Consensus 397 ----------------------e~~~-~~~~lS~~Ll~~i~~~l--~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd 451 (730)
T COG1198 397 ----------------------EPLE-TGRSLSPALLEAIRKTL--ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCD 451 (730)
T ss_pred ----------------------cccc-cCccCCHHHHHHHHHHH--hcCCeEEEEEccCCccceeecccCCCcccCCCCC
Confidence 0000 00002245566666553 5577889998766644322211100000
Q ss_pred ---------------------------CCC------------CCchHHHHHhhhccceEEEecCCCHH--HHHHHHHHhh
Q 013392 345 ---------------------------SPH------------SQPDMELKQLFLRCKTFRLHGNMKQE--DRRTTFGAFK 383 (444)
Q Consensus 345 ---------------------------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~f~ 383 (444)
+.+ +..+++....||+.++..+.++.... .-+..+..|.
T Consensus 452 ~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~ 531 (730)
T COG1198 452 SPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFA 531 (730)
T ss_pred cceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHh
Confidence 000 11167788899999999999988554 4578899999
Q ss_pred cCCCcEEEEecccccCCCCCCCcEEEEccCCCC------------cchhhhcccccccCCCccccc
Q 013392 384 TEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE------------ATEYVHRYLKHLPVGNFYFNI 437 (444)
Q Consensus 384 ~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s------------~~~~~Q~~GR~~R~g~~g~~~ 437 (444)
+|+.+|||+|+|+..|.|+|+++.|..++.... ...+.|..||+||.+++|.++
T Consensus 532 ~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 532 NGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred CCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 999999999999999999999999887653321 235689999999998888664
No 109
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.4e-23 Score=188.34 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=108.9
Q ss_pred cCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHH
Q 013392 297 VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR 376 (444)
Q Consensus 297 ~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 376 (444)
-+.....+-|...++... ..+.+++|-+=+++.|+.+.++|.+. |+++..+|++...-+|.
T Consensus 426 Rp~~~QvdDL~~EI~~r~--~~~eRvLVTtLTKkmAEdLT~Yl~e~-----------------gikv~YlHSdidTlER~ 486 (663)
T COG0556 426 RPTKGQVDDLLSEIRKRV--AKNERVLVTTLTKKMAEDLTEYLKEL-----------------GIKVRYLHSDIDTLERV 486 (663)
T ss_pred ecCCCcHHHHHHHHHHHH--hcCCeEEEEeehHHHHHHHHHHHHhc-----------------CceEEeeeccchHHHHH
Confidence 345566777777777764 55689999999999999999999998 99999999999999999
Q ss_pred HHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEcc-----CCCCcchhhhcccccccCCCcccccce
Q 013392 377 TTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD-----SAGEATEYVHRYLKHLPVGNFYFNIPL 439 (444)
Q Consensus 377 ~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~-----~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 439 (444)
++++.++.|..+|||+.+.+-+|+|+|.|..|.++| ...|..+++|-+||+.| +-.|.+|..
T Consensus 487 eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAAR-N~~GkvIlY 553 (663)
T COG0556 487 EIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKVILY 553 (663)
T ss_pred HHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhh-ccCCeEEEE
Confidence 999999999999999999999999999999999987 45688999999999999 567777653
No 110
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.92 E-value=2.1e-23 Score=194.19 Aligned_cols=351 Identities=17% Similarity=0.219 Sum_probs=223.5
Q ss_pred CCCHHHHhHHHhHh----cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.+++||.+.+.++. +|-++|+...+|.|||+..+.. +.++.... +-.+-.||++|...|.+ |..++++|
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~-l~yl~~~~-----~~~GPfLVi~P~StL~N-W~~Ef~rf 239 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISL-LGYLKGRK-----GIPGPFLVIAPKSTLDN-WMNEFKRF 239 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHH-HHHHHHhc-----CCCCCeEEEeeHhhHHH-HHHHHHHh
Confidence 49999999998876 5678999999999999975543 33333221 11233799999966654 88889998
Q ss_pred hcccCceeeEEEeCCcchhHHH-HHh--cCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHH
Q 013392 117 LHRFHWIVPGYVMGGENRSKEK-ARL--RKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193 (444)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~ 193 (444)
.+. +...+++|+...+... +.+ ....+|+|+|++.++.--. .+.--.|.++|+||+|++.+. ...+..+
T Consensus 240 ~P~---l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~---~lk~~~W~ylvIDEaHRiKN~--~s~L~~~ 311 (971)
T KOG0385|consen 240 TPS---LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS---FLKKFNWRYLVIDEAHRIKNE--KSKLSKI 311 (971)
T ss_pred CCC---cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH---HHhcCCceEEEechhhhhcch--hhHHHHH
Confidence 764 4445555544333221 221 3368999999999876311 111137899999999998764 3344466
Q ss_pred HHHhcCCCCCCCCCCCcccccceeEEEEEeecc-hhhHHHHHhh-cCCCeEEcc--------c-----------------
Q 013392 194 LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN-EKVNHLAKIS-LETPVLIGL--------D----------------- 246 (444)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~-~~~~~~~~~~-~~~~~~~~~--------~----------------- 246 (444)
++.+. ....+++|+||- +...++..+. +--|-++.. .
T Consensus 312 lr~f~----------------~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~v 375 (971)
T KOG0385|consen 312 LREFK----------------TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKV 375 (971)
T ss_pred HHHhc----------------ccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhh
Confidence 66665 345577788873 3333322221 111111000 0
Q ss_pred -------------CcCCCCCccccc---ccCccccccccccCCCcccc--------cc--CccccccccceeeEEE----
Q 013392 247 -------------EKKLPEDKSHVR---FGSLESDVKEEVEHPSTTMR--------ST--TEDFKLPAQLVQRYVK---- 296 (444)
Q Consensus 247 -------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~---- 296 (444)
...+|....... +..+.+.........+.... .. ...+.+.++++|-|..
T Consensus 376 L~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~e 455 (971)
T KOG0385|consen 376 LRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAE 455 (971)
T ss_pred hhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCC
Confidence 000111111111 11111111111000000000 00 0001122222222221
Q ss_pred -----------cCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEE
Q 013392 297 -----------VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFR 365 (444)
Q Consensus 297 -----------~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (444)
+..+.|+..|..+|..+. ..++++|||..-......+.+++.-+ ++..+.
T Consensus 456 Pg~pyttdehLv~nSGKm~vLDkLL~~Lk--~~GhRVLIFSQmt~mLDILeDyc~~R-----------------~y~ycR 516 (971)
T KOG0385|consen 456 PGPPYTTDEHLVTNSGKMLVLDKLLPKLK--EQGHRVLIFSQMTRMLDILEDYCMLR-----------------GYEYCR 516 (971)
T ss_pred CCCCCCcchHHHhcCcceehHHHHHHHHH--hCCCeEEEeHHHHHHHHHHHHHHHhc-----------------CceeEe
Confidence 234668888888888874 66899999998777777777776554 899999
Q ss_pred EecCCCHHHHHHHHHHhhcCC---CcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 366 LHGNMKQEDRRTTFGAFKTEK---KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 366 ~~~~~~~~~r~~~~~~f~~g~---~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+.|+++-++|...++.|.... .-+|++|.+.+-|+|+..++.||.|+..||+-.-.|.+.||+|.||+..++.|-.
T Consensus 517 iDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RL 595 (971)
T KOG0385|consen 517 LDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRL 595 (971)
T ss_pred ecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEE
Confidence 999999999999999998654 4478899999999999999999999999999999999999999999988877654
No 111
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.90 E-value=5.7e-23 Score=199.73 Aligned_cols=359 Identities=14% Similarity=0.160 Sum_probs=225.9
Q ss_pred CCHHHHhHHHhHh--c--CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 42 PTKVQAQAIPVIL--S--GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 42 ~~~~Q~~~~~~~~--~--~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
+|.||++.+.++. + +=+.|+|.++|.|||+..+-.+......++....+....-.|||||+ .|+..|..++.+++
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 7999999987754 2 23679999999999998776666555444333333344448999999 99999999999998
Q ss_pred cccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHh
Q 013392 118 HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197 (444)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l 197 (444)
+. .......++-..+...+...++.+|+|++|+.+.+-+.. +.-.+|+|+|+||-|-+.+ -...+.+..+.+
T Consensus 1055 pf---L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN--~ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1055 PF---LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKN--SKTKLTKAVKQL 1126 (1549)
T ss_pred ch---hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecc--hHHHHHHHHHHH
Confidence 76 333334444444444444455679999999998753321 1113789999999996544 344555666666
Q ss_pred cCCCCCCCCCCCcccccceeEEEEEeec-chhhHHHHHhhc-CCCeEEcccCcCC-------------------------
Q 013392 198 GSRNIGSIGEGNEVSNVKRQNLLLSATL-NEKVNHLAKISL-ETPVLIGLDEKKL------------------------- 250 (444)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~i~~Sat~-~~~~~~~~~~~~-~~~~~~~~~~~~~------------------------- 250 (444)
.. ..+ +.+|+|| .++..++..++. --|.++.......
T Consensus 1127 ~a---------------~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~l 1190 (1549)
T KOG0392|consen 1127 RA---------------NHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVL 1190 (1549)
T ss_pred hh---------------cce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHH
Confidence 64 444 4557776 345555444321 1222221111100
Q ss_pred -------------------------CCCcccccccCcc---cccccc-----------ccCCCccccccC-----c-ccc
Q 013392 251 -------------------------PEDKSHVRFGSLE---SDVKEE-----------VEHPSTTMRSTT-----E-DFK 285 (444)
Q Consensus 251 -------------------------~~~~~~~~~~~~~---~~~~~~-----------~~~~~~~~~~~~-----~-~~~ 285 (444)
|.....-+|.++. +...+. ..........+. . -..
T Consensus 1191 AleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqY 1270 (1549)
T KOG0392|consen 1191 ALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQY 1270 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHH
Confidence 0000000111111 111000 000000000000 0 000
Q ss_pred ccccceee------------------------EEEcCCCCcHHHHHHHHHhhccc------------ccCceEEEEeccc
Q 013392 286 LPAQLVQR------------------------YVKVPCGSRLAVLLSILKHLFDT------------EVSQKLVVFFSTC 329 (444)
Q Consensus 286 ~~~~~~~~------------------------~~~~~~~~k~~~l~~~l~~~~~~------------~~~~~~ivf~~~~ 329 (444)
..+-.+|- ...+..+.|+.+|.++|.++--. -.+++++|||.-+
T Consensus 1271 lrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK 1350 (1549)
T KOG0392|consen 1271 LRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLK 1350 (1549)
T ss_pred HHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHH
Confidence 00000000 00122367888888888876321 1357999999999
Q ss_pred chhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcC-CCcEEE-EecccccCCCCCCCcE
Q 013392 330 DAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE-KKALLL-STDVAARGLDFPKVKC 407 (444)
Q Consensus 330 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~iLi-~t~~~~~G~di~~~~~ 407 (444)
.....+.+-|-+.. .+.....++.|+.++.+|.++.++|.++ .+++|+ +|.+.+-|+|+..++.
T Consensus 1351 ~mlDlVekDL~k~~--------------mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADT 1416 (1549)
T KOG0392|consen 1351 SMLDLVEKDLFKKY--------------MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADT 1416 (1549)
T ss_pred HHHHHHHHHHhhhh--------------cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCce
Confidence 99999987665432 2366667899999999999999999998 477765 5789999999999999
Q ss_pred EEEccCCCCcchhhhcccccccCCCcccccce
Q 013392 408 IIQYDSAGEATEYVHRYLKHLPVGNFYFNIPL 439 (444)
Q Consensus 408 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 439 (444)
||++...||+..-.|.+.||+|.||+-++..+
T Consensus 1417 VVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1417 VVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred EEEEecCCCchhhHHHHHHHHhhcCceeeeee
Confidence 99999999999999999999999998766543
No 112
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.8e-21 Score=187.33 Aligned_cols=304 Identities=20% Similarity=0.250 Sum_probs=204.0
Q ss_pred HHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHH
Q 013392 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~ 106 (444)
+...+.+.+..|+. |+..|+-....+..|+++-+.||||.|||...++..+.... .+.++++|+||..|+
T Consensus 69 e~~~~fF~k~~G~~-~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~---------kgkr~yii~PT~~Lv 138 (1187)
T COG1110 69 EEFEEFFKKATGFR-PWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK---------KGKRVYIIVPTTTLV 138 (1187)
T ss_pred HHHHHHHHHhhCCC-chHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh---------cCCeEEEEecCHHHH
Confidence 34455665666885 99999999999999999999999999999765555544442 467899999999999
Q ss_pred HHHHHHHHHHhcccCc-eeeEEEeCCcch---hHHHHHh-cCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHh
Q 013392 107 LQVYEILHKLLHRFHW-IVPGYVMGGENR---SKEKARL-RKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI 181 (444)
Q Consensus 107 ~q~~~~l~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~-~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~ 181 (444)
.|..+.+.++....+. ....+.++.... .+...++ .++.+|+|+|.+-|...+..... -++++|++|++|.+
T Consensus 139 ~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfifVDDVDA~ 215 (1187)
T COG1110 139 RQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK---LKFDFIFVDDVDAI 215 (1187)
T ss_pred HHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEEEccHHHH
Confidence 9999999999876652 222223332222 2223333 34699999999888776665333 27899999999987
Q ss_pred hhcchhHHHHHHHHHhcCCC------------------CCCCCCC-----------CcccccceeEEEEEeecchhhH--
Q 013392 182 LELGFGKEIEEILDILGSRN------------------IGSIGEG-----------NEVSNVKRQNLLLSATLNEKVN-- 230 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~------------------~~~~~~~-----------~~~~~~~~~~i~~Sat~~~~~~-- 230 (444)
+..+ +.++.++..++-.. .....+. ........+++..|||..+...
T Consensus 216 Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~ 293 (1187)
T COG1110 216 LKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRL 293 (1187)
T ss_pred Hhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchH
Confidence 6653 22222222222100 0000000 0123346788999999765432
Q ss_pred -HHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHH
Q 013392 231 -HLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSI 309 (444)
Q Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 309 (444)
-+-.+..-.+.. . .....++.+.++.. ...+.+..+
T Consensus 294 ~LfReLlgFevG~-----~-----------------------------------~~~LRNIvD~y~~~---~~~e~~~el 330 (1187)
T COG1110 294 KLFRELLGFEVGS-----G-----------------------------------GEGLRNIVDIYVES---ESLEKVVEL 330 (1187)
T ss_pred HHHHHHhCCccCc-----c-----------------------------------chhhhheeeeeccC---ccHHHHHHH
Confidence 122211111100 0 01123333444333 455556667
Q ss_pred HHhhcccccCceEEEEecc---cchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCC
Q 013392 310 LKHLFDTEVSQKLVVFFST---CDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK 386 (444)
Q Consensus 310 l~~~~~~~~~~~~ivf~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 386 (444)
++.+ +...|||++. ++.++.+++.|+++ |+++..+|+. +.+.++.|..|+
T Consensus 331 vk~l-----G~GgLIfV~~d~G~e~aeel~e~Lr~~-----------------Gi~a~~~~a~-----~~~~le~F~~Ge 383 (1187)
T COG1110 331 VKKL-----GDGGLIFVPIDYGREKAEELAEYLRSH-----------------GINAELIHAE-----KEEALEDFEEGE 383 (1187)
T ss_pred HHHh-----CCCeEEEEEcHHhHHHHHHHHHHHHhc-----------------CceEEEeecc-----chhhhhhhccCc
Confidence 7665 5578999999 89999999999998 8999999883 267789999999
Q ss_pred CcEEEEe----cccccCCCCC-CCcEEEEccCCC
Q 013392 387 KALLLST----DVAARGLDFP-KVKCIIQYDSAG 415 (444)
Q Consensus 387 ~~iLi~t----~~~~~G~di~-~~~~vi~~~~~~ 415 (444)
+++||++ ..+.+|+|+| .++.+|+++.|.
T Consensus 384 idvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 384 VDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred eeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 9999985 4688999999 589999999994
No 113
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.5e-21 Score=185.10 Aligned_cols=339 Identities=17% Similarity=0.113 Sum_probs=216.6
Q ss_pred HHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHH
Q 013392 30 CDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (444)
Q Consensus 30 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 109 (444)
.+.....+|+. |++.|.-+.-.++.|+ +..+.||.|||+++.++++..... |..|.+++|+..|+.|-
T Consensus 68 REa~~R~lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~---------G~~VhvvT~NdyLA~RD 135 (764)
T PRK12326 68 REAAERTLGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ---------GRRVHVITVNDYLARRD 135 (764)
T ss_pred HHHHHHHcCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc---------CCCeEEEcCCHHHHHHH
Confidence 34444556886 9999999999988875 889999999999999999887755 66799999999999999
Q ss_pred HHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHH-HHHh-----ccCccccCCccEEEEechhHhhh
Q 013392 110 YEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLL-DHLK-----HTSSFLHTNLRWIIFDEADRILE 183 (444)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~-~~l~-----~~~~~~~~~~~lvV~DE~h~~~~ 183 (444)
++++..++..++. ....+.++..... + +....+||+++|...+- ++|+ .........+.+.|+||+|+++-
T Consensus 136 ae~m~~ly~~LGL-svg~i~~~~~~~e-r-r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI 212 (764)
T PRK12326 136 AEWMGPLYEALGL-TVGWITEESTPEE-R-RAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV 212 (764)
T ss_pred HHHHHHHHHhcCC-EEEEECCCCCHHH-H-HHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee
Confidence 9999999988774 4445544444332 2 23335799999987542 2222 11233446789999999998633
Q ss_pred cc---------------hhHHHHHHHHHhcCCCCCCCCCC-C-------------------c------------------
Q 013392 184 LG---------------FGKEIEEILDILGSRNIGSIGEG-N-------------------E------------------ 210 (444)
Q Consensus 184 ~~---------------~~~~~~~~~~~l~~~~~~~~~~~-~-------------------~------------------ 210 (444)
+. ....+..+...+........... . .
T Consensus 213 DeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL 292 (764)
T PRK12326 213 DEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVAL 292 (764)
T ss_pred ccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHH
Confidence 21 22233334444332100000000 0 0
Q ss_pred -----------------------------------------------------------------ccccceeEEEEEeec
Q 013392 211 -----------------------------------------------------------------VSNVKRQNLLLSATL 225 (444)
Q Consensus 211 -----------------------------------------------------------------~~~~~~~~i~~Sat~ 225 (444)
.-.....+.++|+|.
T Consensus 293 ~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa 372 (764)
T PRK12326 293 HAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTA 372 (764)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCC
Confidence 000011222233332
Q ss_pred chhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHH
Q 013392 226 NEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAV 305 (444)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 305 (444)
......+...+.-+ +.....+...........+......|...
T Consensus 373 ~t~~~Ef~~iY~l~-------------------------------------Vv~IPtnkp~~R~d~~d~iy~t~~~k~~A 415 (764)
T PRK12326 373 VAAGEQLRQFYDLG-------------------------------------VSVIPPNKPNIREDEADRVYATAAEKNDA 415 (764)
T ss_pred hhHHHHHHHHhCCc-------------------------------------EEECCCCCCceeecCCCceEeCHHHHHHH
Confidence 22222222211111 00001111111111122334445667888
Q ss_pred HHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcC
Q 013392 306 LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE 385 (444)
Q Consensus 306 l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 385 (444)
+...+.+.. ..+.|+||.+.+++..+.+...|.+. +++.-++++.....+-..+-+.-+.
T Consensus 416 ii~ei~~~~--~~GrPVLVgt~sI~~SE~ls~~L~~~-----------------gI~h~vLNAk~~~~EA~IIa~AG~~- 475 (764)
T PRK12326 416 IVEHIAEVH--ETGQPVLVGTHDVAESEELAERLRAA-----------------GVPAVVLNAKNDAEEARIIAEAGKY- 475 (764)
T ss_pred HHHHHHHHH--HcCCCEEEEeCCHHHHHHHHHHHHhC-----------------CCcceeeccCchHhHHHHHHhcCCC-
Confidence 888777763 56889999999999999999999987 7788888887555554444444333
Q ss_pred CCcEEEEecccccCCCCCCC---------------cEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 386 KKALLLSTDVAARGLDFPKV---------------KCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 386 ~~~iLi~t~~~~~G~di~~~---------------~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
..|.|||+|+++|.||.-- =+||.-..+.|.+---|-.||+||.|++|.+..|++
T Consensus 476 -gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lS 545 (764)
T PRK12326 476 -GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVS 545 (764)
T ss_pred -CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEE
Confidence 4789999999999999421 156777788888888999999999999999988775
No 114
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.7e-22 Score=189.04 Aligned_cols=349 Identities=16% Similarity=0.194 Sum_probs=217.0
Q ss_pred CCCHHHHhHHHhHh----cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.|.+||++.+.++. ++...|+...+|.|||...+. .+..+.....- ...+|||||. .+..||..++..|
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiis-FLaaL~~S~k~-----~~paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIIS-FLAALHHSGKL-----TKPALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHH-HHHHHhhcccc-----cCceEEEccH-HHHHHHHHHHHHh
Confidence 47899999999877 567889999999999986433 34434332110 1449999998 8999999999999
Q ss_pred hcccCceeeEEEeCCcch--------hHHHHH-----hcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhh
Q 013392 117 LHRFHWIVPGYVMGGENR--------SKEKAR-----LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (444)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~--------~~~~~~-----~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~ 183 (444)
... .....+++.... ...+.. ......|+|+|++.+.-. . +...-..|+++|+||.|++-+
T Consensus 278 ~p~---~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~-d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 278 WPP---FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--G-DDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred Ccc---eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--C-cccccccccEEEecCcccccC
Confidence 764 333333333221 111111 123356999999987542 1 223334789999999999876
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecc-hhhHHHHHhh-cCCCeEEcccCc------------C
Q 013392 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN-EKVNHLAKIS-LETPVLIGLDEK------------K 249 (444)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~-~~~~~~~~~~-~~~~~~~~~~~~------------~ 249 (444)
+. ..+...++.++ ..+.+.+|.||- +.+.++..++ +..|..+...+. .
T Consensus 352 pn--s~islackki~----------------T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~Gg 413 (923)
T KOG0387|consen 352 PN--SKISLACKKIR----------------TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGG 413 (923)
T ss_pred Cc--cHHHHHHHhcc----------------ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccc
Confidence 52 33333344444 456677788863 4555554432 111111110000 0
Q ss_pred ---------------------------------------CCCCcccccccCcc---cccccc---------ccCCCc---
Q 013392 250 ---------------------------------------LPEDKSHVRFGSLE---SDVKEE---------VEHPST--- 275 (444)
Q Consensus 250 ---------------------------------------~~~~~~~~~~~~~~---~~~~~~---------~~~~~~--- 275 (444)
++.....+-|..+. ...... ......
T Consensus 414 yaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l 493 (923)
T KOG0387|consen 414 YANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCL 493 (923)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccce
Confidence 00000000000000 000000 000000
Q ss_pred cccccCccccccccceee-----------EEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhccc
Q 013392 276 TMRSTTEDFKLPAQLVQR-----------YVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQW 344 (444)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~ 344 (444)
.........+..+.+... .-....+.|..++..++..-. ..+.++++|..++.....+...|...
T Consensus 494 ~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~--kqg~rvllFsqs~~mLdilE~fL~~~-- 569 (923)
T KOG0387|consen 494 SGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWK--KQGDRVLLFSQSRQMLDILESFLRRA-- 569 (923)
T ss_pred echHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHh--hCCCEEEEehhHHHHHHHHHHHHHhc--
Confidence 000000000111111000 012234568888888887654 45679999999999999998888742
Q ss_pred CCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCC-C-cEEEEecccccCCCCCCCcEEEEccCCCCcchhhh
Q 013392 345 SPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK-K-ALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422 (444)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~-~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q 422 (444)
.++..+.+.|..+...|..++++|.+++ . -+|++|.+.+-|+|+..++-||+|||.||+.+=.|
T Consensus 570 --------------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~Q 635 (923)
T KOG0387|consen 570 --------------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQ 635 (923)
T ss_pred --------------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchH
Confidence 1999999999999999999999999776 3 36788999999999999999999999999999999
Q ss_pred cccccccCCCcccccc
Q 013392 423 RYLKHLPVGNFYFNIP 438 (444)
Q Consensus 423 ~~GR~~R~g~~g~~~~ 438 (444)
..-|++|.||+-.++.
T Consensus 636 AreRawRiGQkkdV~V 651 (923)
T KOG0387|consen 636 ARERAWRIGQKKDVVV 651 (923)
T ss_pred HHHHHHhhcCccceEE
Confidence 9999999999765543
No 115
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.89 E-value=2.5e-21 Score=185.63 Aligned_cols=355 Identities=15% Similarity=0.143 Sum_probs=198.3
Q ss_pred CCCHHHHhHHHhHhc---C-------CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHH
Q 013392 41 APTKVQAQAIPVILS---G-------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~---~-------~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 110 (444)
.++|||++++..+.. | ...|+...+|+|||+..+..+...+...+...+ --.+.|||+|. .|+..|.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~--~~~k~lVV~P~-sLv~nWk 314 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP--LINKPLVVAPS-SLVNNWK 314 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc--cccccEEEccH-HHHHHHH
Confidence 389999999999872 2 247999999999999877666555555322111 12679999998 8999999
Q ss_pred HHHHHHhcccCceeeEEEeCCcch-hHH---HHHhc---CCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhh
Q 013392 111 EILHKLLHRFHWIVPGYVMGGENR-SKE---KARLR---KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (444)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~---~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~ 183 (444)
.++.+|.... .+....+++.... +.. ...+. -..-+.+.+++.+...... +....++++|+||.|++-+
T Consensus 315 kEF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 315 KEFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccc
Confidence 9999997641 2344444444432 100 01011 1245888899998765543 2335889999999998543
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecc-hhhHHHHH-hhcCCCeEEcccCcCCCCCcccc-ccc
Q 013392 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN-EKVNHLAK-ISLETPVLIGLDEKKLPEDKSHV-RFG 260 (444)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~ 260 (444)
. ...+...+..+. ....|++|+||= +...++.. +.+-+|.++.........-...+ .-+
T Consensus 391 ~--~s~~~kaL~~l~----------------t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~ 452 (776)
T KOG0390|consen 391 S--DSLTLKALSSLK----------------TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGR 452 (776)
T ss_pred h--hhHHHHHHHhcC----------------CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhccccccc
Confidence 2 222333333333 556778899972 34444333 33334433322111100000000 000
Q ss_pred Ccccccc-----ccccCCCc----ccc--ccCccccccccceeeEEEcC-------------------------------
Q 013392 261 SLESDVK-----EEVEHPST----TMR--STTEDFKLPAQLVQRYVKVP------------------------------- 298 (444)
Q Consensus 261 ~~~~~~~-----~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~------------------------------- 298 (444)
+...... +....... ... +........+....+.+.+.
T Consensus 453 ~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~ 532 (776)
T KOG0390|consen 453 DADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITK 532 (776)
T ss_pred CCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHH
Confidence 0000000 00000000 000 00000000011111111111
Q ss_pred -------------------------------------------CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhh
Q 013392 299 -------------------------------------------CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (444)
Q Consensus 299 -------------------------------------------~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l 335 (444)
...++..|..++.... .....++++. .+......+
T Consensus 533 L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~-ek~~~~~v~I-sny~~tldl 610 (776)
T KOG0390|consen 533 LKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIR-EKLLVKSVLI-SNYTQTLDL 610 (776)
T ss_pred HHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHh-hhcceEEEEe-ccHHHHHHH
Confidence 1223344444432221 0111233232 333333333
Q ss_pred hhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCC--c-EEEEecccccCCCCCCCcEEEEcc
Q 013392 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK--A-LLLSTDVAARGLDFPKVKCIIQYD 412 (444)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~--~-iLi~t~~~~~G~di~~~~~vi~~~ 412 (444)
.+.+.+. .|+.++.++|+++..+|+.+++.|.+... . +|.++-+.++|+++-.++.||.||
T Consensus 611 ~e~~~~~----------------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D 674 (776)
T KOG0390|consen 611 FEQLCRW----------------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFD 674 (776)
T ss_pred HHHHHhh----------------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeC
Confidence 3333332 28999999999999999999999996442 3 455677999999999999999999
Q ss_pred CCCCcchhhhcccccccCCCcccccc
Q 013392 413 SAGEATEYVHRYLKHLPVGNFYFNIP 438 (444)
Q Consensus 413 ~~~s~~~~~Q~~GR~~R~g~~g~~~~ 438 (444)
+.||+..=.|+++|++|.||+-.|+.
T Consensus 675 ~dWNPa~d~QAmaR~~RdGQKk~v~i 700 (776)
T KOG0390|consen 675 PDWNPAVDQQAMARAWRDGQKKPVYI 700 (776)
T ss_pred CCCCchhHHHHHHHhccCCCcceEEE
Confidence 99999999999999999999876653
No 116
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.2e-21 Score=190.99 Aligned_cols=124 Identities=17% Similarity=0.122 Sum_probs=107.6
Q ss_pred cCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHH
Q 013392 297 VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR 376 (444)
Q Consensus 297 ~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 376 (444)
.....|...+...+.+.. ..+.++||||++++.++.+.++|... +++...+|+ .+.+|+
T Consensus 578 ~t~~eK~~Ali~~I~~~~--~~grpVLIft~Sve~sE~Ls~~L~~~-----------------gI~h~vLna--kq~~RE 636 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQ--KKGQPVLVGTASVEVSETLSRMLRAK-----------------RIAHNVLNA--KQHDRE 636 (1025)
T ss_pred cCHHHHHHHHHHHHHHHh--hCCCCEEEEeCcHHHHHHHHHHHHHc-----------------CCCceeecC--CHHHhH
Confidence 344568888888887653 45789999999999999999999988 888888997 577889
Q ss_pred HHHHHhhcCCCcEEEEecccccCCCCC---CCcE-----EEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 377 TTFGAFKTEKKALLLSTDVAARGLDFP---KVKC-----IIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 377 ~~~~~f~~g~~~iLi~t~~~~~G~di~---~~~~-----vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
..+..|..+...|+|||+++++|+||+ .+.. ||....|.|.+.|.|++||+||.|.+|.++.|+.
T Consensus 637 a~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvS 709 (1025)
T PRK12900 637 AEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVS 709 (1025)
T ss_pred HHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEec
Confidence 999999999999999999999999998 4433 3778888999999999999999999999988874
No 117
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.88 E-value=3.5e-20 Score=180.62 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=108.8
Q ss_pred CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
...++..+...++... ..+.+++|||+++..++.+.+.|.+. |+++..+|++++..+|.++
T Consensus 424 ~~~qi~~Ll~eI~~~~--~~g~~vLIf~~tk~~ae~L~~~L~~~-----------------gi~~~~lh~~~~~~eR~~~ 484 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRV--ARNERVLVTTLTKKMAEDLTDYLKEL-----------------GIKVRYLHSEIDTLERVEI 484 (655)
T ss_pred ccchHHHHHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHhhh-----------------ccceeeeeCCCCHHHHHHH
Confidence 4456667777776653 55789999999999999999999987 8899999999999999999
Q ss_pred HHHhhcCCCcEEEEecccccCCCCCCCcEEEEcc-----CCCCcchhhhcccccccCCCcccccceE
Q 013392 379 FGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD-----SAGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~-----~~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
++.|+.|+.+|||||+.+++|+|+|++++|++++ .|.+...|+||+||+||. ..|.++.+.
T Consensus 485 l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~ 550 (655)
T TIGR00631 485 IRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYA 550 (655)
T ss_pred HHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEE
Confidence 9999999999999999999999999999999987 789999999999999997 678877664
No 118
>COG4889 Predicted helicase [General function prediction only]
Probab=99.88 E-value=1.8e-23 Score=196.90 Aligned_cols=382 Identities=17% Similarity=0.139 Sum_probs=207.7
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcC----CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCC
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG----RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 93 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~----~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~ 93 (444)
.+|+-... .+++..+.-.... .|||||++|+++...+ .+.-+.+++|+|||++++-...... .
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~k-k~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala-----------~ 206 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPK-KPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALA-----------A 206 (1518)
T ss_pred CChhhcCc-cccccccccCCCC-CCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHh-----------h
Confidence 44544333 4555666333234 5999999999988754 4567888999999999887655433 2
Q ss_pred ceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchh--------------------H---HH--HHhcCCCcEE
Q 013392 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS--------------------K---EK--ARLRKGISIL 148 (444)
Q Consensus 94 ~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------------~---~~--~~~~~~~~ii 148 (444)
.++|+++|+.+|..|..+++..-.. +. .....++++.+.. . .+ .....+.-|+
T Consensus 207 ~~iL~LvPSIsLLsQTlrew~~~~~-l~-~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vv 284 (1518)
T COG4889 207 ARILFLVPSISLLSQTLREWTAQKE-LD-FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVV 284 (1518)
T ss_pred hheEeecchHHHHHHHHHHHhhccC-cc-ceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEE
Confidence 4599999999999998877765422 11 2222222221110 0 01 1122345699
Q ss_pred EeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchh
Q 013392 149 VATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK 228 (444)
Q Consensus 149 i~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~ 228 (444)
++|++++...-+- ...-+..+++||+||+|+.........-..-+...+. ...-.....+.+||||.--
T Consensus 285 FsTYQSl~~i~eA-Qe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs----------~~niKa~kRlYmTATPkiy 353 (1518)
T COG4889 285 FSTYQSLPRIKEA-QEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHS----------DQNIKAAKRLYMTATPKIY 353 (1518)
T ss_pred EEcccchHHHHHH-HHcCCCCccEEEecchhccccceecccCcccceeecC----------cchhHHHHhhhcccCchhh
Confidence 9999998774432 4455678999999999986443221111111111111 0011134556788887543
Q ss_pred hHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcC------CCCc
Q 013392 229 VNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP------CGSR 302 (444)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~k 302 (444)
.++.....-.+...+....++..-...+.+++..+......+......... .....+...+........ .-.+
T Consensus 354 ~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvla-Vd~~~i~~~~~~~~~~~~~~L~~dd~~k 432 (1518)
T COG4889 354 SESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLA-VDKEVIAGVLQSVLSGPSKGLALDDVSK 432 (1518)
T ss_pred chhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEE-echhhhhhhhhhhccCcccccchhhhhh
Confidence 333322222222333222222222222222221111111111111000000 000000011111111111 1112
Q ss_pred HHHHHHHHHhhc-----------ccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccc--eEEEecC
Q 013392 303 LAVLLSILKHLF-----------DTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCK--TFRLHGN 369 (444)
Q Consensus 303 ~~~l~~~l~~~~-----------~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 369 (444)
.-..+.-+...- ...+..++|-||.+++....+.+.+...-... .++....+++.. +-.+.|.
T Consensus 433 IvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y----~~Elk~d~~nL~iSi~HvDGt 508 (1518)
T COG4889 433 IVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAY----DEELKKDFKNLKISIDHVDGT 508 (1518)
T ss_pred hhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHhcCCCceEEeeccccc
Confidence 222222222110 11223578899999999888887765432110 112222244544 4556689
Q ss_pred CCHHHHHHHHHH---hhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccC
Q 013392 370 MKQEDRRTTFGA---FKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPV 430 (444)
Q Consensus 370 ~~~~~r~~~~~~---f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 430 (444)
|+..+|.+.+.. |...+.+||-...++++|+|+|.++.||++++..++.+.+|.+||+.|.
T Consensus 509 mNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 509 MNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred ccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 999998554432 4556788998899999999999999999999999999999999999994
No 119
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.88 E-value=1e-20 Score=185.41 Aligned_cols=308 Identities=18% Similarity=0.191 Sum_probs=202.7
Q ss_pred CCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhccc-
Q 013392 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF- 120 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~- 120 (444)
-+....+.+.++.++.-++|+|+||+|||...-..+++... ..+.++.+.=|++--+...++++.+-.+..
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEKL 122 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--------ccCCeEEecCchHHHHHHHHHHHHHHhCCCc
Confidence 45666778888888999999999999999765555554332 234557777799988888888877655432
Q ss_pred CceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHh-hhcc-hhHHHHHHHHHhc
Q 013392 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI-LELG-FGKEIEEILDILG 198 (444)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~-~~~~-~~~~~~~~~~~l~ 198 (444)
+..+...+-..+ ......+|-++|...|...+.. ...++.+++||+||+|+= ++.. ....+..++...+
T Consensus 123 G~~VGY~iRfe~-------~~s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr 193 (845)
T COG1643 123 GETVGYSIRFES-------KVSPRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRR 193 (845)
T ss_pred CceeeEEEEeec-------cCCCCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC
Confidence 222222211111 1123457999999999998885 334679999999999971 1110 1122223333333
Q ss_pred CCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCcccc
Q 013392 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMR 278 (444)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (444)
. ..++|.+|||+... .+...+ ++...+.+....+|
T Consensus 194 ~---------------DLKiIimSATld~~--rfs~~f-~~apvi~i~GR~fP--------------------------- 228 (845)
T COG1643 194 D---------------DLKLIIMSATLDAE--RFSAYF-GNAPVIEIEGRTYP--------------------------- 228 (845)
T ss_pred C---------------CceEEEEecccCHH--HHHHHc-CCCCEEEecCCccc---------------------------
Confidence 2 57999999998753 444433 33333333332211
Q ss_pred ccCccccccccceeeEEE-cCCCC-cHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHH
Q 013392 279 STTEDFKLPAQLVQRYVK-VPCGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQ 356 (444)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~-~~~~~-k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 356 (444)
+..+|.. ..... -...+...+.... ....+.++||.+-..+.+...+.|.+....
T Consensus 229 -----------Vei~Y~~~~~~d~~l~~ai~~~v~~~~-~~~~GdILvFLpG~~EI~~~~~~L~~~~l~----------- 285 (845)
T COG1643 229 -----------VEIRYLPEAEADYILLDAIVAAVDIHL-REGSGSILVFLPGQREIERTAEWLEKAELG----------- 285 (845)
T ss_pred -----------eEEEecCCCCcchhHHHHHHHHHHHhc-cCCCCCEEEECCcHHHHHHHHHHHHhcccc-----------
Confidence 0111101 11111 2334444444443 344689999999999999999999872110
Q ss_pred hhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCC------------------CCcc
Q 013392 357 LFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA------------------GEAT 418 (444)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~------------------~s~~ 418 (444)
....+..+||.++.+++.++++---.|..+|++||+++++++.+|+++.||+-+.. -|-.
T Consensus 286 --~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqA 363 (845)
T COG1643 286 --DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKA 363 (845)
T ss_pred --CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechh
Confidence 25788999999999999998887777767799999999999999999999986633 2345
Q ss_pred hhhhcccccccCCCccccc
Q 013392 419 EYVHRYLKHLPVGNFYFNI 437 (444)
Q Consensus 419 ~~~Q~~GR~~R~g~~g~~~ 437 (444)
+-.||.|||||- .+|.||
T Consensus 364 sA~QRaGRAGR~-~pGicy 381 (845)
T COG1643 364 SADQRAGRAGRT-GPGICY 381 (845)
T ss_pred hhhhhccccccC-CCceEE
Confidence 668999999995 567765
No 120
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=6.6e-21 Score=185.26 Aligned_cols=135 Identities=21% Similarity=0.232 Sum_probs=99.1
Q ss_pred HHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHH
Q 013392 33 LRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (444)
Q Consensus 33 l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 112 (444)
.....|.. |++.|..+--.+..|+ |..+.||+|||+++.++++..... |..|.+++|+..|+.|.+++
T Consensus 75 ~~R~lGm~-~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~---------G~~VhvvT~ndyLA~RD~e~ 142 (913)
T PRK13103 75 GKRVMGMR-HFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALS---------GKGVHVVTVNDYLARRDANW 142 (913)
T ss_pred HHHHhCCC-cchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHH
Confidence 33444775 8888888776666554 999999999999999999877755 66799999999999999999
Q ss_pred HHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHH-HHHHhc-----cCccccCCccEEEEechhHhh
Q 013392 113 LHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKH-----TSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~-----~~~~~~~~~~lvV~DE~h~~~ 182 (444)
+..++..++..+ .++.++....+.+.. ..++|+++|..-+ +++|+. ........+.++|+||+|+++
T Consensus 143 m~~l~~~lGl~v-~~i~~~~~~~err~~--Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 143 MRPLYEFLGLSV-GIVTPFQPPEEKRAA--YAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred HHHHhcccCCEE-EEECCCCCHHHHHHH--hcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 999998877444 445444443333322 3379999999876 333332 122234788999999999863
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.87 E-value=6.2e-20 Score=186.88 Aligned_cols=74 Identities=28% Similarity=0.388 Sum_probs=60.2
Q ss_pred HHHHHHHHHHcCCCCCCHHHHhHHH----hHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 27 STLCDQLRERLGFEAPTKVQAQAIP----VILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~~~~Q~~~~~----~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
+...+.+ ...||+ +|+.|.+.++ .+.+++++++.+|||+|||++|++|++..... +.+++|.+||
T Consensus 233 ~~~~~~~-~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~---------~~~vvi~t~t 301 (850)
T TIGR01407 233 SLFSKNI-DRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT---------EKPVVISTNT 301 (850)
T ss_pred HHHHHhh-hhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC---------CCeEEEEeCc
Confidence 3556666 446897 9999998666 45578899999999999999999999886642 3469999999
Q ss_pred HHHHHHHHH
Q 013392 103 RELCLQVYE 111 (444)
Q Consensus 103 ~~L~~q~~~ 111 (444)
++|..|+..
T Consensus 302 ~~Lq~Ql~~ 310 (850)
T TIGR01407 302 KVLQSQLLE 310 (850)
T ss_pred HHHHHHHHH
Confidence 999999865
No 122
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.86 E-value=6.7e-20 Score=169.72 Aligned_cols=313 Identities=17% Similarity=0.166 Sum_probs=200.2
Q ss_pred CHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH-HhcccC
Q 013392 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK-LLHRFH 121 (444)
Q Consensus 43 ~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~-~~~~~~ 121 (444)
..+-.+.+..+.+++-+++.|+||+|||...-..+.+.-.. ...++.+--|++.-+...+++... ....++
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~--------~~g~I~~TQPRRVAavslA~RVAeE~~~~lG 124 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA--------SSGKIACTQPRRVAAVSLAKRVAEEMGCQLG 124 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc--------cCCcEEeecCchHHHHHHHHHHHHHhCCCcC
Confidence 44446788888888999999999999998766555443333 223366667998888888776554 333333
Q ss_pred ceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCC
Q 013392 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRN 201 (444)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~ 201 (444)
..+...+-=.+. -.....|.+.|...|++-+.. ...++++++||+||||+=. -..+.+..+++.+-...
T Consensus 125 ~~VGY~IRFed~-------ts~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERs--l~TDiLlGlLKki~~~R 193 (674)
T KOG0922|consen 125 EEVGYTIRFEDS-------TSKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERS--LHTDILLGLLKKILKKR 193 (674)
T ss_pred ceeeeEEEeccc-------CCCceeEEEecchHHHHHHhc--CCccccccEEEEechhhhh--hHHHHHHHHHHHHHhcC
Confidence 222221110100 112347999999999987764 3345699999999999611 02233444444443322
Q ss_pred CCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccC
Q 013392 202 IGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTT 281 (444)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (444)
. ..++|.+|||+.. +.+...+..-|.. .+.-...
T Consensus 194 ~------------~LklIimSATlda--~kfS~yF~~a~i~-~i~GR~f------------------------------- 227 (674)
T KOG0922|consen 194 P------------DLKLIIMSATLDA--EKFSEYFNNAPIL-TIPGRTF------------------------------- 227 (674)
T ss_pred C------------CceEEEEeeeecH--HHHHHHhcCCceE-eecCCCC-------------------------------
Confidence 1 6799999999763 3455544432333 2222110
Q ss_pred ccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhcc
Q 013392 282 EDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRC 361 (444)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 361 (444)
-++..+...+...-+.....-+.+.....+.+.++||....++.+..++.|.+......+. .+.
T Consensus 228 -------PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~--------~~~- 291 (674)
T KOG0922|consen 228 -------PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPED--------CPE- 291 (674)
T ss_pred -------ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcccc--------Ccc-
Confidence 1112222223333333333333333345677899999999999999999998763321110 001
Q ss_pred ceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC------------------CCCcchhhhc
Q 013392 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS------------------AGEATEYVHR 423 (444)
Q Consensus 362 ~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~------------------~~s~~~~~Q~ 423 (444)
-+..++|.++.+++.++++.--.|..+|+++|++++..+.||.+..||+-|. |-|...=.||
T Consensus 292 ~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QR 371 (674)
T KOG0922|consen 292 LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQR 371 (674)
T ss_pred eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhh
Confidence 3577999999999999998888899999999999999999999999997652 2244556899
Q ss_pred ccccccCCCccccc
Q 013392 424 YLKHLPVGNFYFNI 437 (444)
Q Consensus 424 ~GR~~R~g~~g~~~ 437 (444)
.||+||- .+|+|+
T Consensus 372 aGRAGRt-~pGkcy 384 (674)
T KOG0922|consen 372 AGRAGRT-GPGKCY 384 (674)
T ss_pred cccCCCC-CCceEE
Confidence 9999885 466665
No 123
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.86 E-value=1.1e-19 Score=155.13 Aligned_cols=186 Identities=41% Similarity=0.614 Sum_probs=143.9
Q ss_pred cCCCCCCHHHHhHHHhHhcC-CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 37 LGFEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 37 ~~~~~~~~~Q~~~~~~~~~~-~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
+++..++++|.++++.+... +.+++.++||+|||.+++.++++.+.. ....++++++|+..++.|+...+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~-------~~~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR-------GKGKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc-------cCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 46677999999999999988 999999999999999999888888765 2245699999999999999999998
Q ss_pred HhcccCceeeEEEeCCcchhHHHHHhcCCC-cEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHH
Q 013392 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGI-SILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194 (444)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~ 194 (444)
.+..... ......++............+. +++++|++.+.+.+.... .....++++|+||+|.+....+...+..+.
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 77 LGPSLGL-KVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred HhccCCe-EEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 8764332 2233334444344444454554 999999999999887633 445678899999999887645677777777
Q ss_pred HHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEccc
Q 013392 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246 (444)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~ 246 (444)
..+.. ..+++++|||++.........+......+...
T Consensus 155 ~~~~~---------------~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 155 KLLPK---------------NVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred HhCCc---------------cceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 76643 77899999999988888888877766665444
No 124
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.86 E-value=2.3e-21 Score=181.36 Aligned_cols=348 Identities=19% Similarity=0.252 Sum_probs=213.2
Q ss_pred CCCCCCHHHHhHHHhHh----cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHH
Q 013392 38 GFEAPTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~----~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l 113 (444)
|+. |.+||.-.+.++. .+-+.|+...+|.|||..++. .+.++.+. +....=|||||+..|-+ |.+++
T Consensus 397 ~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIa-FlayLkq~------g~~gpHLVVvPsSTleN-WlrEf 467 (941)
T KOG0389|consen 397 GIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIA-FLAYLKQI------GNPGPHLVVVPSSTLEN-WLREF 467 (941)
T ss_pred CCc-ccchhhhhHHHHHHHHHccccceehhhccCcchhHHHH-HHHHHHHc------CCCCCcEEEecchhHHH-HHHHH
Confidence 565 9999999998876 455789999999999986554 44444432 22333588899966554 78889
Q ss_pred HHHhcccCceeeEEEeCCcchhHHHHHh-c---CCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHH
Q 013392 114 HKLLHRFHWIVPGYVMGGENRSKEKARL-R---KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189 (444)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~ 189 (444)
.+|++. ..+...+|+...+...+.. . ...+|+++||+.....-.....+.-.+++++|+||.|.+.+.... .
T Consensus 468 ~kwCPs---l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~Se-R 543 (941)
T KOG0389|consen 468 AKWCPS---LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSE-R 543 (941)
T ss_pred HHhCCc---eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchH-H
Confidence 998764 5666677766555443332 2 248999999987653221111222247899999999976544221 1
Q ss_pred HHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecc-hhhHHHHHh-hcCCCeEEcccCcCC-------C---------
Q 013392 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN-EKVNHLAKI-SLETPVLIGLDEKKL-------P--------- 251 (444)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~-~~~~~~~~~-~~~~~~~~~~~~~~~-------~--------- 251 (444)
++.+...+ ..+.+++|+||- +...++..+ .+--|.++......+ .
T Consensus 544 ----y~~LM~I~-------------An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~ 606 (941)
T KOG0389|consen 544 ----YKHLMSIN-------------ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENA 606 (941)
T ss_pred ----HHHhcccc-------------ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHH
Confidence 22222222 456678888873 444444432 222222221111110 0
Q ss_pred ---CC-----cccc-cc--cCccccccccccCC----C---------------------------cc--ccc--------
Q 013392 252 ---ED-----KSHV-RF--GSLESDVKEEVEHP----S---------------------------TT--MRS-------- 279 (444)
Q Consensus 252 ---~~-----~~~~-~~--~~~~~~~~~~~~~~----~---------------------------~~--~~~-------- 279 (444)
.. +..+ +| ..........++.- . .. ...
T Consensus 607 ~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlR 686 (941)
T KOG0389|consen 607 LLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLR 686 (941)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHH
Confidence 00 0000 00 00000000000000 0 00 000
Q ss_pred --------------------------------------------cCccccccc------cceeeEEE---cCCCCcHHHH
Q 013392 280 --------------------------------------------TTEDFKLPA------QLVQRYVK---VPCGSRLAVL 306 (444)
Q Consensus 280 --------------------------------------------~~~~~~~~~------~~~~~~~~---~~~~~k~~~l 306 (444)
.+.++.+.. .+..+... ...+.|...|
T Consensus 687 K~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L 766 (941)
T KOG0389|consen 687 KAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKL 766 (941)
T ss_pred HHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHH
Confidence 000000000 00000000 0015577777
Q ss_pred HHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCC
Q 013392 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK 386 (444)
Q Consensus 307 ~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 386 (444)
..+|.+.. ..+++++||.........+...|.-+ +++...+.|...-.+|+.+++.|..++
T Consensus 767 ~~LLp~~k--~~G~RVLiFSQFTqmLDILE~~L~~l-----------------~~~ylRLDGsTqV~~RQ~lId~Fn~d~ 827 (941)
T KOG0389|consen 767 KELLPKIK--KKGDRVLIFSQFTQMLDILEVVLDTL-----------------GYKYLRLDGSTQVNDRQDLIDEFNTDK 827 (941)
T ss_pred HHHHHHHh--hcCCEEEEeeHHHHHHHHHHHHHHhc-----------------CceEEeecCCccchHHHHHHHhhccCC
Confidence 77777663 55689999998888888888788776 899999999999999999999998655
Q ss_pred --CcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcc
Q 013392 387 --KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFY 434 (444)
Q Consensus 387 --~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g 434 (444)
.-+|++|-+.+.|+|+..+++||.+|...|+-+=.|.-.||+|.||.-
T Consensus 828 difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtk 877 (941)
T KOG0389|consen 828 DIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTK 877 (941)
T ss_pred ceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcc
Confidence 457889999999999999999999999999999999999999999864
No 125
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=2e-19 Score=173.29 Aligned_cols=338 Identities=16% Similarity=0.125 Sum_probs=210.6
Q ss_pred HHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHH
Q 013392 31 DQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (444)
Q Consensus 31 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 110 (444)
+.....+|.. |++.|.-+.-.+..|+ |..+.||-|||+++.+|++...+. |..|-|++.+..|+..-+
T Consensus 69 EA~~R~lG~r-~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~---------GkgVhVVTvNdYLA~RDa 136 (925)
T PRK12903 69 EATKRVLGKR-PYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT---------GKGVIVSTVNEYLAERDA 136 (925)
T ss_pred HHHHHHhCCC-cCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc---------CCceEEEecchhhhhhhH
Confidence 4444455885 9999988877776664 899999999999999988776655 566999999999999999
Q ss_pred HHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHH-HHHHhcc-----CccccCCccEEEEechhHhhhc
Q 013392 111 EILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRILEL 184 (444)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~-----~~~~~~~~~lvV~DE~h~~~~~ 184 (444)
+++..+...++..+. +...+.... .++....+||+++|...| +++|+.. .......+.+.|+||+|+++-+
T Consensus 137 e~mg~vy~fLGLsvG-~i~~~~~~~--~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILID 213 (925)
T PRK12903 137 EEMGKVFNFLGLSVG-INKANMDPN--LKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILID 213 (925)
T ss_pred HHHHHHHHHhCCcee-eeCCCCChH--HHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeec
Confidence 999998887775543 333332222 233344589999998765 3344421 2223467889999999985332
Q ss_pred c----------------hhHHHHHHHHHhcCCCCCCCCCC-------------------Cc-------------------
Q 013392 185 G----------------FGKEIEEILDILGSRNIGSIGEG-------------------NE------------------- 210 (444)
Q Consensus 185 ~----------------~~~~~~~~~~~l~~~~~~~~~~~-------------------~~------------------- 210 (444)
. ....+..+...+....+..-... ..
T Consensus 214 EArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A 293 (925)
T PRK12903 214 EAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRA 293 (925)
T ss_pred ccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHH
Confidence 1 22233333333322100000000 00
Q ss_pred ---------------------------------------------------------------ccccceeEEEEEeecch
Q 013392 211 ---------------------------------------------------------------VSNVKRQNLLLSATLNE 227 (444)
Q Consensus 211 ---------------------------------------------------------------~~~~~~~~i~~Sat~~~ 227 (444)
.-.....+.++|+|...
T Consensus 294 ~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~t 373 (925)
T PRK12903 294 HKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKT 373 (925)
T ss_pred HHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHH
Confidence 00000112222222221
Q ss_pred hhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHH
Q 013392 228 KVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLL 307 (444)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 307 (444)
....+...+. ..+.....+.........-.+......|...+.
T Consensus 374 e~~Ef~~iY~-------------------------------------l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii 416 (925)
T PRK12903 374 EEQEFIDIYN-------------------------------------MRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVV 416 (925)
T ss_pred HHHHHHHHhC-------------------------------------CCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHH
Confidence 1111111110 000011111111111112233445667888888
Q ss_pred HHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCC
Q 013392 308 SILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK 387 (444)
Q Consensus 308 ~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 387 (444)
..+.+.. ..+.|+||.|.+++..+.++.+|.+. |++.-++++.....+...+-++-+ ..
T Consensus 417 ~ei~~~~--~~gqPVLVgT~SIe~SE~ls~~L~~~-----------------gi~h~vLNAk~~e~EA~IIa~AG~--~G 475 (925)
T PRK12903 417 KEVKRVH--KKGQPILIGTAQVEDSETLHELLLEA-----------------NIPHTVLNAKQNAREAEIIAKAGQ--KG 475 (925)
T ss_pred HHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-----------------CCCceeecccchhhHHHHHHhCCC--CC
Confidence 8777764 46889999999999999999999987 777777877654444444433322 35
Q ss_pred cEEEEecccccCCCCCCCc--------EEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 388 ALLLSTDVAARGLDFPKVK--------CIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 388 ~iLi~t~~~~~G~di~~~~--------~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
.|.|||+|+++|.||.--. +||....+.|.+---|..||+||.|.+|.+-.|++
T Consensus 476 aVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 476 AITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred eEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEe
Confidence 7999999999999994222 77888888888888899999999999998887764
No 126
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.85 E-value=8.3e-20 Score=162.45 Aligned_cols=340 Identities=15% Similarity=0.146 Sum_probs=209.5
Q ss_pred CCCCCHHHHhHHHhHh-cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 39 FEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 39 ~~~~~~~Q~~~~~~~~-~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
++.+-|+|++.+...+ .|..+++...+|.|||+.++..+..+...++ .||+||. ++.-.|++.+..|+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwp----------lliVcPA-svrftWa~al~r~l 264 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWP----------LLIVCPA-SVRFTWAKALNRFL 264 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCc----------EEEEecH-HHhHHHHHHHHHhc
Confidence 5668899999998766 6678999999999999998876655544432 8999998 77788999999998
Q ss_pred cccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHh
Q 013392 118 HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197 (444)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l 197 (444)
+.... +.++.++...-. .+.....|.|.+++.+..+-. ...-..+++||+||+|.+.+. -.+........+
T Consensus 265 ps~~p--i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~---~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dll 335 (689)
T KOG1000|consen 265 PSIHP--IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD---ILKKEKYRVVIFDESHMLKDS-KTKRTKAATDLL 335 (689)
T ss_pred ccccc--eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHH---HHhcccceEEEEechhhhhcc-chhhhhhhhhHH
Confidence 75432 222222222211 112223599999998765322 122245899999999976443 333344444433
Q ss_pred cCCCCCCCCCCCcccccceeEEEEEeecch-------------------hhHHHHHhhcCC---CeEEcccCcCCCCCcc
Q 013392 198 GSRNIGSIGEGNEVSNVKRQNLLLSATLNE-------------------KVNHLAKISLET---PVLIGLDEKKLPEDKS 255 (444)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~-------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 255 (444)
.. ...+|++|+|+.. ....+...+..- +...............
T Consensus 336 k~---------------akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~ 400 (689)
T KOG1000|consen 336 KV---------------AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELA 400 (689)
T ss_pred HH---------------hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHH
Confidence 33 4567888988742 111122222211 0111000000000000
Q ss_pred cccccC-ccccccccccCCCccccccCccccccccceeeEEE-------------------------------------c
Q 013392 256 HVRFGS-LESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVK-------------------------------------V 297 (444)
Q Consensus 256 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~ 297 (444)
.+-+.. |-+.. .......+|..-....+. .
T Consensus 401 ~lL~k~lMIRRl------------K~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~ 468 (689)
T KOG1000|consen 401 ALLFKRLMIRRL------------KADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSL 468 (689)
T ss_pred HHHHHHHHHHHH------------HHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHH
Confidence 000000 00000 000000111111111111 1
Q ss_pred CCCCcHHHHHHHHHh--hcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHH
Q 013392 298 PCGSRLAVLLSILKH--LFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDR 375 (444)
Q Consensus 298 ~~~~k~~~l~~~l~~--~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 375 (444)
....|...+..-|.+ ++....+.|.+|||......+.+...+++. +.....+.|..+..+|
T Consensus 469 tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r-----------------~vg~IRIDGst~s~~R 531 (689)
T KOG1000|consen 469 TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKR-----------------KVGSIRIDGSTPSHRR 531 (689)
T ss_pred hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHc-----------------CCCeEEecCCCCchhH
Confidence 112333333333332 112345689999999999999999999887 8888999999999999
Q ss_pred HHHHHHhhcCC-CcE-EEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEEe
Q 013392 376 RTTFGAFKTEK-KAL-LLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIVC 442 (444)
Q Consensus 376 ~~~~~~f~~g~-~~i-Li~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~~ 442 (444)
....+.|+..+ ++| +++..+++.|+++...+.|++...++|+.-++|.-.|++|.||++.+-....|
T Consensus 532 ~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylv 600 (689)
T KOG1000|consen 532 TLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLV 600 (689)
T ss_pred HHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEE
Confidence 99999998544 544 56677889999999999999999999999999999999999998866544443
No 127
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.85 E-value=7.1e-19 Score=172.98 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=108.9
Q ss_pred CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
...+...+...|.... ..+.+++|||+++..++.+.+.|.+. |+++..+|++++..+|..+
T Consensus 428 ~~~q~~~L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~~-----------------gi~~~~~h~~~~~~~R~~~ 488 (652)
T PRK05298 428 TKGQVDDLLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKEL-----------------GIKVRYLHSDIDTLERVEI 488 (652)
T ss_pred ccccHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhhc-----------------ceeEEEEECCCCHHHHHHH
Confidence 3445667777776653 45789999999999999999999987 8899999999999999999
Q ss_pred HHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC-----CCCcchhhhcccccccCCCcccccceEE
Q 013392 379 FGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS-----AGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
++.|+.|...|+|||+.+++|+|+|.+++|++++. |.+...|+||+||+||. ..|.++.++-
T Consensus 489 l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~ 555 (652)
T PRK05298 489 IRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYAD 555 (652)
T ss_pred HHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEec
Confidence 99999999999999999999999999999998774 78999999999999995 7898887763
No 128
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.84 E-value=1.6e-20 Score=183.42 Aligned_cols=347 Identities=17% Similarity=0.199 Sum_probs=215.7
Q ss_pred CCCCHHHHhHHHhHh----cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 40 EAPTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 40 ~~~~~~Q~~~~~~~~----~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
.++|.||.+.+.+++ .+.++|+...+|.|||+..+.-+........- -+-.|+|+|. +-+..|.+++..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~------~gpflvvvpl-st~~~W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQI------HGPFLVVVPL-STITAWEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhc------cCCeEEEeeh-hhhHHHHHHHHH
Confidence 469999999988866 78999999999999998654433322222111 1227899998 556668888998
Q ss_pred HhcccCceeeEEEeCCcchhHHHHHh----cC-----CCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcch
Q 013392 116 LLHRFHWIVPGYVMGGENRSKEKARL----RK-----GISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF 186 (444)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~ 186 (444)
|. . ....+..+....+...+.. .. +.+++++|++.++.--..... -.+.++++||+|++.+.
T Consensus 442 w~-~---mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~---i~w~~~~vDeahrLkN~-- 512 (1373)
T KOG0384|consen 442 WT-D---MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSK---IPWRYLLVDEAHRLKND-- 512 (1373)
T ss_pred Hh-h---hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhcc---CCcceeeecHHhhcCch--
Confidence 87 3 3444455555555444332 12 368999999998763222122 26789999999998653
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecc-hhhHHHHHhh-cCCCeEEcccCcCC--------------
Q 013392 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN-EKVNHLAKIS-LETPVLIGLDEKKL-------------- 250 (444)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~-~~~~~~~~~~-~~~~~~~~~~~~~~-------------- 250 (444)
...+...+..+. ....+++|.||- +.+..+..+. +-.|.-+.......
T Consensus 513 ~~~l~~~l~~f~----------------~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L 576 (1373)
T KOG0384|consen 513 ESKLYESLNQFK----------------MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKL 576 (1373)
T ss_pred HHHHHHHHHHhc----------------ccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHH
Confidence 222333344443 334567788874 4555544332 22332221111110
Q ss_pred --------------------CCCc---ccccccCccccccccccCCCccccccCcc----------ccccccceeeEEEc
Q 013392 251 --------------------PEDK---SHVRFGSLESDVKEEVEHPSTTMRSTTED----------FKLPAQLVQRYVKV 297 (444)
Q Consensus 251 --------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 297 (444)
+... -.+.+..+.+......-.-.+...+.... +.+-++.+|-|..-
T Consensus 577 ~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~ 656 (1373)
T KOG0384|consen 577 QQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIK 656 (1373)
T ss_pred HHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccC
Confidence 0000 00111111111111111000000000000 11111222222211
Q ss_pred -----------------------CCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHH
Q 013392 298 -----------------------PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMEL 354 (444)
Q Consensus 298 -----------------------~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 354 (444)
.++.|+-.|..+|-.+ ...++++|||..-......|.++|...
T Consensus 657 gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rL--k~~GHrVLIFSQMVRmLDIL~eYL~~r------------ 722 (1373)
T KOG0384|consen 657 GAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRL--KEGGHRVLIFSQMVRMLDILAEYLSLR------------ 722 (1373)
T ss_pred cHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHH--hcCCceEEEhHHHHHHHHHHHHHHHHc------------
Confidence 1223333333444343 356799999999999999999999877
Q ss_pred HHhhhccceEEEecCCCHHHHHHHHHHhhc---CCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCC
Q 013392 355 KQLFLRCKTFRLHGNMKQEDRRTTFGAFKT---EKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVG 431 (444)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 431 (444)
+++.-.+.|.+..+-|+..++.|.. .+..+|++|.+.+-|||+..++.||+||..||+-.=+|.+.||+|.|
T Consensus 723 -----~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIG 797 (1373)
T KOG0384|consen 723 -----GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIG 797 (1373)
T ss_pred -----CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhc
Confidence 8889999999999999999999985 44668999999999999999999999999999999999999999999
Q ss_pred Cccccc
Q 013392 432 NFYFNI 437 (444)
Q Consensus 432 ~~g~~~ 437 (444)
|+..+-
T Consensus 798 Qkk~Vn 803 (1373)
T KOG0384|consen 798 QKKHVN 803 (1373)
T ss_pred ccceEE
Confidence 987653
No 129
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.82 E-value=3.3e-18 Score=167.24 Aligned_cols=342 Identities=18% Similarity=0.165 Sum_probs=216.3
Q ss_pred CCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh-ccc
Q 013392 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL-HRF 120 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~-~~~ 120 (444)
.+..+.+.++++.+++-+++.|.||+|||.....-++....... ...++++--|++--+-..+++..+-- ...
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC------CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 67788889999999999999999999999988887777665532 22336666688877777777765432 222
Q ss_pred CceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCC
Q 013392 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (444)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~ 200 (444)
+..+...+.-. .....+..+.+||...|++.+.. ...+..+..||+||+|+= +. ..+.+..+++.+-..
T Consensus 248 g~~VGYqvrl~-------~~~s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER-~i-~~DflLi~lk~lL~~ 316 (924)
T KOG0920|consen 248 GEEVGYQVRLE-------SKRSRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHER-SI-NTDFLLILLKDLLPR 316 (924)
T ss_pred CCeeeEEEeee-------cccCCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEc-cC-CcccHHHHHHHHhhh
Confidence 21221111111 11122357999999999999986 344568999999999962 11 112222222222221
Q ss_pred CCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCC-------cccccccCccccccccccCC
Q 013392 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED-------KSHVRFGSLESDVKEEVEHP 273 (444)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 273 (444)
++ ..++|++|||+. .+.+...+ +....+.+.....|-. .....+..-.....
T Consensus 317 ~p------------~LkvILMSAT~d--ae~fs~YF-~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~------ 375 (924)
T KOG0920|consen 317 NP------------DLKVILMSATLD--AELFSDYF-GGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSAR------ 375 (924)
T ss_pred CC------------CceEEEeeeecc--hHHHHHHh-CCCceEeecCCCcchHHHHHHHHHHHhcccccccccc------
Confidence 11 889999999987 33444444 4443333332222111 11111111000000
Q ss_pred CccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHH
Q 013392 274 STTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDME 353 (444)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 353 (444)
...... ..... .......+.....+.+++....+....+.+|||.+..++...+.+.|.....-...
T Consensus 376 --~~~~~~--~~~~~----~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~----- 442 (924)
T KOG0920|consen 376 --SGPERS--QLRLA----RLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS----- 442 (924)
T ss_pred --cccccC--ccccc----cchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc-----
Confidence 000000 00000 01112233566677777777766666899999999999999999998653221110
Q ss_pred HHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEcc--------CCC----------
Q 013392 354 LKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD--------SAG---------- 415 (444)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~--------~~~---------- 415 (444)
...-+..+|+.++.++++.+....-.|..+|+++|++++.++.|+++-.||+.+ +-.
T Consensus 443 -----~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wv 517 (924)
T KOG0920|consen 443 -----LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWV 517 (924)
T ss_pred -----cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeec
Confidence 146778899999999999999998899999999999999999999999999755 222
Q ss_pred CcchhhhcccccccCCCcccccceE
Q 013392 416 EATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 416 s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
|...-.||.||+||. +.|.||-+.
T Consensus 518 SkAna~QR~GRAGRv-~~G~cy~L~ 541 (924)
T KOG0920|consen 518 SKANAKQRRGRAGRV-RPGICYHLY 541 (924)
T ss_pred cccchHHhcccccCc-cCCeeEEee
Confidence 233448999999995 788887654
No 130
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=1.9e-19 Score=162.81 Aligned_cols=341 Identities=9% Similarity=0.007 Sum_probs=226.8
Q ss_pred HHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHH
Q 013392 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (444)
Q Consensus 35 ~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~ 114 (444)
+.+--+....+|.+++..+.+|+++++.-.|.+||++++..+....... ......+++.|++++++...+-+.
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~ 352 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL-------CHATNSLLPSEMVEHLRNGSKGQV 352 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc-------CcccceecchhHHHHhhccCCceE
Confidence 4444455889999999999999999999999999999988877766544 344558899999998887655433
Q ss_pred HHhcccCc--eeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhcc----CccccCCccEEEEechhHhhhcchhH
Q 013392 115 KLLHRFHW--IVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT----SSFLHTNLRWIIFDEADRILELGFGK 188 (444)
Q Consensus 115 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~----~~~~~~~~~lvV~DE~h~~~~~~~~~ 188 (444)
-.....+. ...+-.+++..........+.+.+++++.|+.......-. ..+. -...++++||+|.. ..-++.
T Consensus 353 V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~-~~~~~~~~~~~~~Y-~~~~~~ 430 (1034)
T KOG4150|consen 353 VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPV-FEELCKDTNSCALY-LFPTKA 430 (1034)
T ss_pred EEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHH-HHHHHhcccceeee-ecchhh
Confidence 22221111 2234445566666666667788999999999876644321 1111 13468999999953 322332
Q ss_pred HH----HHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeE-EcccCcCCCCCcccccccCcc
Q 013392 189 EI----EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVL-IGLDEKKLPEDKSHVRFGSLE 263 (444)
Q Consensus 189 ~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 263 (444)
.. ..+....+..- .....|++-.++|+-........++.-+... +..+..+ .
T Consensus 431 ~~~~~~R~L~~L~~~F~----------~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSP--s----------- 487 (1034)
T KOG4150|consen 431 LAQDQLRALSDLIKGFE----------ASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSP--S----------- 487 (1034)
T ss_pred HHHHHHHHHHHHHHHHH----------hhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCC--C-----------
Confidence 22 22222221100 0116688888999888777777665433322 2222111 1
Q ss_pred ccccccccCCCccccccCccccccccceeeEEEc---------CCCCcHHHHHHHHHhhcccccCceEEEEecccchhhh
Q 013392 264 SDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKV---------PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (444)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~ 334 (444)
.-.+....- ..+++......++.++. -.+-++|-||.+++.|+.
T Consensus 488 -------------------------~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i--~~~~R~IAFC~~R~~CEL 540 (1034)
T KOG4150|consen 488 -------------------------SEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMV--QHGLRCIAFCPSRKLCEL 540 (1034)
T ss_pred -------------------------ccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHH--HcCCcEEEeccHHHHHHH
Confidence 111111111 12233444444444443 346799999999999999
Q ss_pred hhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCC
Q 013392 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (444)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~ 414 (444)
+....++....... + +-..+..+.|+.+.++|..+....-.|++.-+|+|++++-|+|+..++.|++.+.|
T Consensus 541 ~~~~~R~I~~ET~~-------~--LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP 611 (1034)
T KOG4150|consen 541 VLCLTREILAETAP-------H--LVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFP 611 (1034)
T ss_pred HHHHHHHHHHHhhH-------H--HHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCc
Confidence 88776654211110 0 01123447799999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcccccccCCCcccccceEEee
Q 013392 415 GEATEYVHRYLKHLPVGNFYFNIPLIVCF 443 (444)
Q Consensus 415 ~s~~~~~Q~~GR~~R~g~~g~~~~~i~~~ 443 (444)
.|+..+.|+.||+||.++.+.++.+...|
T Consensus 612 ~S~aNl~QQ~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 612 GSIANLWQQAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred hhHHHHHHHhccccccCCCceEEEEEecc
Confidence 99999999999999999998877766543
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.81 E-value=7.7e-18 Score=163.40 Aligned_cols=138 Identities=21% Similarity=0.216 Sum_probs=98.7
Q ss_pred HHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHH
Q 013392 30 CDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (444)
Q Consensus 30 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 109 (444)
.+......|+. |++.|.-+.-.+.. .-|..+.||.|||+++.+|++...+. |..|.|++++..|+.+-
T Consensus 66 rEa~~R~lG~r-~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL~---------G~~VhVvT~NdyLA~RD 133 (870)
T CHL00122 66 REASFRTLGLR-HFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHIVTVNDYLAKRD 133 (870)
T ss_pred HHHHHHHhCCC-CCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHhc---------CCceEEEeCCHHHHHHH
Confidence 34444555886 99999887766554 46999999999999999988765544 56699999999999999
Q ss_pred HHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHH-HHHhc-----cCccccCCccEEEEechhHhh
Q 013392 110 YEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLL-DHLKH-----TSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~-~~l~~-----~~~~~~~~~~lvV~DE~h~~~ 182 (444)
++++..+...++..+ ++..++.... .++....++|+++|...+- ++|+. ........+.+.|+||+|+++
T Consensus 134 ~e~m~pvy~~LGLsv-g~i~~~~~~~--err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 134 QEWMGQIYRFLGLTV-GLIQEGMSSE--ERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHHHHHHcCCce-eeeCCCCChH--HHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 999999988887444 4444443333 2333445799999986542 23322 122244678999999999853
No 132
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=1.3e-17 Score=153.56 Aligned_cols=319 Identities=14% Similarity=0.104 Sum_probs=200.6
Q ss_pred CCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH-Hh
Q 013392 39 FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK-LL 117 (444)
Q Consensus 39 ~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~-~~ 117 (444)
....++|-.+.+.++..++-+||.|.||||||...-..+.+.-.. ..+.++-+--|++.-+..++.+..+ ..
T Consensus 263 sLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt-------k~gk~IgcTQPRRVAAmSVAaRVA~EMg 335 (902)
T KOG0923|consen 263 SLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT-------KGGKKIGCTQPRRVAAMSVAARVAEEMG 335 (902)
T ss_pred cCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc-------cCCceEeecCcchHHHHHHHHHHHHHhC
Confidence 334567778888888888889999999999998655444333222 2234455666998888887766554 32
Q ss_pred cccCceee--EEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHH
Q 013392 118 HRFHWIVP--GYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195 (444)
Q Consensus 118 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~ 195 (444)
-.++..+. ..+-+-. ....-|=++|..+|++-+. ....+.++++||+||+|+=.- ..+.+-.+++
T Consensus 336 vkLG~eVGYsIRFEdcT---------SekTvlKYMTDGmLlREfL--~epdLasYSViiiDEAHERTL--~TDILfgLvK 402 (902)
T KOG0923|consen 336 VKLGHEVGYSIRFEDCT---------SEKTVLKYMTDGMLLREFL--SEPDLASYSVIIVDEAHERTL--HTDILFGLVK 402 (902)
T ss_pred cccccccceEEEecccc---------CcceeeeeecchhHHHHHh--ccccccceeEEEeehhhhhhh--hhhHHHHHHH
Confidence 22221111 1111111 1223477999999998776 455667999999999996110 1222223333
Q ss_pred HhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCc
Q 013392 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPST 275 (444)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (444)
.+....+ ...++..|||+.. +.|...+-.-|++. +...-+
T Consensus 403 DIar~Rp------------dLKllIsSAT~DA--ekFS~fFDdapIF~-iPGRRy------------------------- 442 (902)
T KOG0923|consen 403 DIARFRP------------DLKLLISSATMDA--EKFSAFFDDAPIFR-IPGRRY------------------------- 442 (902)
T ss_pred HHHhhCC------------cceEEeeccccCH--HHHHHhccCCcEEe-ccCccc-------------------------
Confidence 3322111 7788999999653 44555443334442 221110
Q ss_pred cccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHH
Q 013392 276 TMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELK 355 (444)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 355 (444)
-+.-+|...+...-+++...-+.......+.+.+|||..-.++.+...+.|.+..... .
T Consensus 443 -------------PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~L--------G 501 (902)
T KOG0923|consen 443 -------------PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRL--------G 501 (902)
T ss_pred -------------ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHh--------c
Confidence 0112233334444444333333333334556899999988888777777766543211 1
Q ss_pred HhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCC------------------CCc
Q 013392 356 QLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA------------------GEA 417 (444)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~------------------~s~ 417 (444)
.-..++-++.+++.++.+.+..+++--=.|-.+|++||++++..+.|+++..||+-+.. -|.
T Consensus 502 ski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923|consen 502 SKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred cccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeech
Confidence 11236678899999999999999888778889999999999999999999999976533 234
Q ss_pred chhhhcccccccCCCcccccce
Q 013392 418 TEYVHRYLKHLPVGNFYFNIPL 439 (444)
Q Consensus 418 ~~~~Q~~GR~~R~g~~g~~~~~ 439 (444)
..=.||.||+||-| +|+|+=+
T Consensus 582 AsA~QRaGRAGRtg-PGKCfRL 602 (902)
T KOG0923|consen 582 ASANQRAGRAGRTG-PGKCFRL 602 (902)
T ss_pred hhhhhhccccCCCC-CCceEEe
Confidence 45589999999964 7777644
No 133
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.79 E-value=1.8e-18 Score=145.43 Aligned_cols=154 Identities=25% Similarity=0.265 Sum_probs=104.3
Q ss_pred CCCHHHHhHHHhHhc-------CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVILS-------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~-------~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l 113 (444)
+|+++|.+++..+.. .+.+++.+|||+|||.+++..+..... +++|++|+.+|+.|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------------~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------------KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------------EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------------ceeEecCHHHHHHHHHHHH
Confidence 389999999999883 588999999999999998876666554 4999999999999999999
Q ss_pred HHHhcccCceee----------EEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccC----------ccccCCccEE
Q 013392 114 HKLLHRFHWIVP----------GYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS----------SFLHTNLRWI 173 (444)
Q Consensus 114 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~----------~~~~~~~~lv 173 (444)
..+......... ....................+++++|++.+........ .......++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 766543221110 11111122222233345567899999999988765311 1233567899
Q ss_pred EEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecc
Q 013392 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (444)
Q Consensus 174 V~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~ 226 (444)
|+||||++..... ...+.. .. ...++++||||.
T Consensus 151 I~DEaH~~~~~~~---~~~i~~--~~---------------~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPSDSS---YREIIE--FK---------------AAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHHHHH---HHHHHH--SS---------------CCEEEEEESS-S
T ss_pred EEehhhhcCCHHH---HHHHHc--CC---------------CCeEEEEEeCcc
Confidence 9999998765432 233333 22 668899999975
No 134
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.79 E-value=1.1e-16 Score=161.02 Aligned_cols=110 Identities=12% Similarity=0.084 Sum_probs=77.6
Q ss_pred HHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhh
Q 013392 304 AVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFK 383 (444)
Q Consensus 304 ~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~ 383 (444)
..+.+.+.... ..+++++|+++|.+..+.+++.|... ...+ ..-|... .+.+++++|+
T Consensus 634 ~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~-----------------~~~~-l~Qg~~~--~~~~l~~~F~ 691 (820)
T PRK07246 634 EEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW-----------------QVSH-LAQEKNG--TAYNIKKRFD 691 (820)
T ss_pred HHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc-----------------CCcE-EEeCCCc--cHHHHHHHHH
Confidence 34555555543 34679999999999999999888643 2233 3333222 2456899999
Q ss_pred cCCCcEEEEecccccCCCCC--CCcEEEEccCCCC------------------------------cchhhhcccccccCC
Q 013392 384 TEKKALLLSTDVAARGLDFP--KVKCIIQYDSAGE------------------------------ATEYVHRYLKHLPVG 431 (444)
Q Consensus 384 ~g~~~iLi~t~~~~~G~di~--~~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g 431 (444)
+++..||++|..+.+|+|+| ....||+.+.|.. ...+.|.+||..|..
T Consensus 692 ~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~ 771 (820)
T PRK07246 692 RGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRRE 771 (820)
T ss_pred cCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCC
Confidence 98889999999999999997 3555676665521 234589999999965
Q ss_pred C-ccc
Q 013392 432 N-FYF 435 (444)
Q Consensus 432 ~-~g~ 435 (444)
+ .|.
T Consensus 772 ~D~Gv 776 (820)
T PRK07246 772 DQKSA 776 (820)
T ss_pred CCcEE
Confidence 4 554
No 135
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=6.1e-17 Score=156.95 Aligned_cols=137 Identities=22% Similarity=0.259 Sum_probs=101.7
Q ss_pred HHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHH
Q 013392 31 DQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (444)
Q Consensus 31 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 110 (444)
+......|.. |++.|..+--.+..|+ |..+.||.|||+++.+|++...+. |..|-||+++..|+..-+
T Consensus 76 Ea~~R~lG~r-~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~---------GkgVhVVTvNdYLA~RDa 143 (939)
T PRK12902 76 EASKRVLGMR-HFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALT---------GKGVHVVTVNDYLARRDA 143 (939)
T ss_pred HHHHHHhCCC-cchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhc---------CCCeEEEeCCHHHHHhHH
Confidence 3344445775 8888888777776554 999999999999999998887765 566999999999999999
Q ss_pred HHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHH-----HHHHhc-cCccccCCccEEEEechhHhh
Q 013392 111 EILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-----LDHLKH-TSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-----~~~l~~-~~~~~~~~~~lvV~DE~h~~~ 182 (444)
+++..+...++..+ ++...+.. ...++...++||+++|...+ .+.+.. ........+.+.|+||+|+++
T Consensus 144 e~m~~vy~~LGLtv-g~i~~~~~--~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 144 EWMGQVHRFLGLSV-GLIQQDMS--PEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHHHHHHHhCCeE-EEECCCCC--hHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99999988877554 44443332 23344556789999999876 333332 233455788999999999853
No 136
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.79 E-value=1.7e-18 Score=136.76 Aligned_cols=119 Identities=29% Similarity=0.439 Sum_probs=108.7
Q ss_pred CcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHH
Q 013392 301 SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFG 380 (444)
Q Consensus 301 ~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 380 (444)
.|...+.+.+.... ..+.++||||++...++.+.+.|.+. +..+..+|++++..+|..+++
T Consensus 12 ~k~~~i~~~i~~~~--~~~~~~lvf~~~~~~~~~~~~~l~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 72 (131)
T cd00079 12 EKLEALLELLKEHL--KKGGKVLIFCPSKKMLDELAELLRKP-----------------GIKVAALHGDGSQEEREEVLK 72 (131)
T ss_pred HHHHHHHHHHHhcc--cCCCcEEEEeCcHHHHHHHHHHHHhc-----------------CCcEEEEECCCCHHHHHHHHH
Confidence 67888888887753 25789999999999999999999874 778999999999999999999
Q ss_pred HhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccc
Q 013392 381 AFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIP 438 (444)
Q Consensus 381 ~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~ 438 (444)
.|.++...+|++|.++++|+|+|.+++|++++++++...+.|++||++|.|+.|.++.
T Consensus 73 ~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 73 DFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred HHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEe
Confidence 9999999999999999999999999999999999999999999999999999887654
No 137
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=3.1e-17 Score=151.53 Aligned_cols=318 Identities=14% Similarity=0.119 Sum_probs=191.8
Q ss_pred CCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
.+...-..+.+.+..+..++-+++.|.||||||......+++.-.. ..+-+-+--|++.-+...+++...-.
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~--------~~GmIGcTQPRRvAAiSVAkrVa~EM 424 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYA--------DNGMIGCTQPRRVAAISVAKRVAEEM 424 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccc--------cCCeeeecCchHHHHHHHHHHHHHHh
Confidence 3444567788888888889999999999999998755544442211 11122233388888888877766533
Q ss_pred -cccCceee--EEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHH
Q 013392 118 -HRFHWIVP--GYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194 (444)
Q Consensus 118 -~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~ 194 (444)
..++.-+. ..+.+-+ .....|=++|...|++-.. ..-.+..++.||+||||+=.- ..+.+.-++
T Consensus 425 ~~~lG~~VGYsIRFEdvT---------~~~T~IkymTDGiLLrEsL--~d~~L~kYSviImDEAHERsl--NtDilfGll 491 (1042)
T KOG0924|consen 425 GVTLGDTVGYSIRFEDVT---------SEDTKIKYMTDGILLRESL--KDRDLDKYSVIIMDEAHERSL--NTDILFGLL 491 (1042)
T ss_pred CCccccccceEEEeeecC---------CCceeEEEeccchHHHHHh--hhhhhhheeEEEechhhhccc--chHHHHHHH
Confidence 22221111 1111100 1223588999998877443 233456899999999996211 122222233
Q ss_pred HHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCC
Q 013392 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPS 274 (444)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (444)
+..-.. .....+|..|||+. .+.+...+.+-|.+. +.-..+ +
T Consensus 492 k~~lar------------RrdlKliVtSATm~--a~kf~nfFgn~p~f~-IpGRTy-----P------------------ 533 (1042)
T KOG0924|consen 492 KKVLAR------------RRDLKLIVTSATMD--AQKFSNFFGNCPQFT-IPGRTY-----P------------------ 533 (1042)
T ss_pred HHHHHh------------hccceEEEeecccc--HHHHHHHhCCCceee-ecCCcc-----c------------------
Confidence 222211 11778999999954 456666554334332 111110 0
Q ss_pred ccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHH
Q 013392 275 TTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMEL 354 (444)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 354 (444)
+...+...+.+.-.+......-........+.++||..-.+..+..+..++....+.+...-
T Consensus 534 ---------------V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~--- 595 (1042)
T KOG0924|consen 534 ---------------VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPT--- 595 (1042)
T ss_pred ---------------eEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCC---
Confidence 01111111112222222222112222455688999999888777777766654332221111
Q ss_pred HHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC------------------CCC
Q 013392 355 KQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS------------------AGE 416 (444)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~------------------~~s 416 (444)
.+..++.+++.++..-+.++++.-..|..+++|||++++..+.+|++.+||.-+. |-|
T Consensus 596 ----~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS 671 (1042)
T KOG0924|consen 596 ----TDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPIS 671 (1042)
T ss_pred ----CceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEech
Confidence 2778999999999999999999888899999999999999999999999997662 223
Q ss_pred cchhhhcccccccCCCccccc
Q 013392 417 ATEYVHRYLKHLPVGNFYFNI 437 (444)
Q Consensus 417 ~~~~~Q~~GR~~R~g~~g~~~ 437 (444)
-..=-||.||+||- .+|.||
T Consensus 672 ~AnA~QRaGRAGRt-~pG~cY 691 (1042)
T KOG0924|consen 672 QANADQRAGRAGRT-GPGTCY 691 (1042)
T ss_pred hccchhhccccCCC-CCccee
Confidence 34447888888885 366665
No 138
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=9.8e-17 Score=150.79 Aligned_cols=334 Identities=16% Similarity=0.112 Sum_probs=193.0
Q ss_pred HhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeE
Q 013392 47 AQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPG 126 (444)
Q Consensus 47 ~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~ 126 (444)
++.++++..+.-+||||.||||||...-.-+++.-...... +.+.-+=|--|++.-+-.++++...-+..++..+..
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~---~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQS---SSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccC---CCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 45677777778899999999999987554444433221110 112234444588888888877766544434333322
Q ss_pred EEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCC
Q 013392 127 YVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIG 206 (444)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (444)
.+--.. .......|-++|...|++-+. ..|.+..++.||+||||+=.- +.+.+.-++.++-......
T Consensus 339 qIRfd~-------ti~e~T~IkFMTDGVLLrEi~--~DflL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k~-- 405 (1172)
T KOG0926|consen 339 QIRFDG-------TIGEDTSIKFMTDGVLLREIE--NDFLLTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQKY-- 405 (1172)
T ss_pred EEEecc-------ccCCCceeEEecchHHHHHHH--HhHhhhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHHH--
Confidence 221111 122335799999999999887 567778999999999996211 1122222222111000000
Q ss_pred CCCcccccceeEEEEEeecchhhHH-HHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCcccc
Q 013392 207 EGNEVSNVKRQNLLLSATLNEKVNH-LAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFK 285 (444)
Q Consensus 207 ~~~~~~~~~~~~i~~Sat~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (444)
....+--.+..+|.+|||+.-..-. ...++-..|..+.++...+|
T Consensus 406 ~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfP---------------------------------- 451 (1172)
T KOG0926|consen 406 YKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFP---------------------------------- 451 (1172)
T ss_pred hhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCc----------------------------------
Confidence 0000112277899999998643222 22223233344444443211
Q ss_pred ccccceeeEEEcCCCCcHHHHHHHHH---hhcccccCceEEEEecccchhhhhhhhhhhcccCCCC-------------C
Q 013392 286 LPAQLVQRYVKVPCGSRLAVLLSILK---HLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHS-------------Q 349 (444)
Q Consensus 286 ~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~-------------~ 349 (444)
.-+..+.....+++....+ ...+.-+.+.+|||+-..++++.+++.|++......+ .
T Consensus 452 -------VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~ 524 (1172)
T KOG0926|consen 452 -------VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKEL 524 (1172)
T ss_pred -------eEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhcccc
Confidence 0111122222233333322 2223456789999999999999999999876331110 0
Q ss_pred c--------------------hH--HHHH----------------h-------------------------------hhc
Q 013392 350 P--------------------DM--ELKQ----------------L-------------------------------FLR 360 (444)
Q Consensus 350 ~--------------------~~--~~~~----------------~-------------------------------~~~ 360 (444)
. +. +..+ . -..
T Consensus 525 k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~p 604 (1172)
T KOG0926|consen 525 KENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGP 604 (1172)
T ss_pred ccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCc
Confidence 0 00 0000 0 012
Q ss_pred cceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCC--------CCcchh----------hh
Q 013392 361 CKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA--------GEATEY----------VH 422 (444)
Q Consensus 361 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~--------~s~~~~----------~Q 422 (444)
.-+..+++-++.+.+.++++.--.|..-++|+|++++..+.||+++.||+-|.. ..+..| -|
T Consensus 605 LyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQ 684 (1172)
T KOG0926|consen 605 LYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQ 684 (1172)
T ss_pred eEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccch
Confidence 235556777888888888888888988899999999999999999999986532 222222 68
Q ss_pred cccccccCCCcccccc
Q 013392 423 RYLKHLPVGNFYFNIP 438 (444)
Q Consensus 423 ~~GR~~R~g~~g~~~~ 438 (444)
|+||+||.| +|.||=
T Consensus 685 RAGRAGRtg-pGHcYR 699 (1172)
T KOG0926|consen 685 RAGRAGRTG-PGHCYR 699 (1172)
T ss_pred hccccCCCC-CCceee
Confidence 888888864 677664
No 139
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=1.8e-18 Score=122.47 Aligned_cols=72 Identities=28% Similarity=0.540 Sum_probs=70.9
Q ss_pred ccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCC
Q 013392 360 RCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVG 431 (444)
Q Consensus 360 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 431 (444)
++.+..+||+++..+|..+++.|.+++..+||+|+++++|+|+|.+++||++++|+|...|.|++||++|.|
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987
No 140
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.75 E-value=9.5e-17 Score=128.81 Aligned_cols=144 Identities=46% Similarity=0.604 Sum_probs=104.6
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (444)
+++++.+|||+|||.+++..+.+.... ....++++++|+..++.|+.+.+..+... ......+.+......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhH
Confidence 468999999999999999888887655 23567999999999999999999988754 234445555555554
Q ss_pred HHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccce
Q 013392 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKR 216 (444)
Q Consensus 137 ~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 216 (444)
.......+.+|+++|++.+...+.... .....++++|+||+|.+.................. ..
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~---------------~~ 135 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPK---------------DR 135 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCc---------------cc
Confidence 445556778999999999988776532 33457889999999987765443332111222222 77
Q ss_pred eEEEEEeec
Q 013392 217 QNLLLSATL 225 (444)
Q Consensus 217 ~~i~~Sat~ 225 (444)
+++++||||
T Consensus 136 ~~i~~saTp 144 (144)
T cd00046 136 QVLLLSATP 144 (144)
T ss_pred eEEEEeccC
Confidence 899999996
No 141
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=2.5e-16 Score=140.38 Aligned_cols=340 Identities=15% Similarity=0.107 Sum_probs=205.5
Q ss_pred hhhhhccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCC
Q 013392 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRI 88 (444)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~ 88 (444)
..+.+...-++|...+.+++-.+.++++-..- .+.++.+.++.+.+++.++++|.||+|||...-..++......
T Consensus 16 ~~~~~~k~~Npf~~~p~s~rY~~ilk~R~~LP-vw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~---- 90 (699)
T KOG0925|consen 16 GAEENAKAINPFNGKPYSQRYYDILKKRRELP-VWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH---- 90 (699)
T ss_pred cccchhhhcCCCCCCcCcHHHHHHHHHHhcCc-hHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh----
Confidence 33444455899999999999999998875553 6677777888888999999999999999987665555544331
Q ss_pred CCCCCceEEEEeccHHHHHHHHHHHHHHhc-----ccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccC
Q 013392 89 DRSSGTFALVLVPTRELCLQVYEILHKLLH-----RFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS 163 (444)
Q Consensus 89 ~~~~~~~vlil~P~~~L~~q~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~ 163 (444)
...|.---|.+.-+.+.+.+...-.. ..+.+...--+ ... +.-+-+||..+|++-...
T Consensus 91 ----~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC---~~~--------~T~Lky~tDgmLlrEams-- 153 (699)
T KOG0925|consen 91 ----LTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDC---TSP--------NTLLKYCTDGMLLREAMS-- 153 (699)
T ss_pred ----ccceeecCchHHHHHHHHHHHHHHhccccchhcccccccccc---CCh--------hHHHHHhcchHHHHHHhh--
Confidence 13366666888888887776654321 11111100000 000 011335666676664443
Q ss_pred ccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEE
Q 013392 164 SFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243 (444)
Q Consensus 164 ~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~ 243 (444)
.-.++++++||+||+|+=.- ..+.+..+++......+ ..+++.+|||+... ..+.+++++..+
T Consensus 154 ~p~l~~y~viiLDeahERtl--ATDiLmGllk~v~~~rp------------dLk~vvmSatl~a~---Kfq~yf~n~Pll 216 (699)
T KOG0925|consen 154 DPLLGRYGVIILDEAHERTL--ATDILMGLLKEVVRNRP------------DLKLVVMSATLDAE---KFQRYFGNAPLL 216 (699)
T ss_pred CcccccccEEEechhhhhhH--HHHHHHHHHHHHHhhCC------------CceEEEeecccchH---HHHHHhCCCCee
Confidence 23456899999999996211 11222333333322111 77899999996542 233455555554
Q ss_pred cccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEE
Q 013392 244 GLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLV 323 (444)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~i 323 (444)
.+.... -.+-+|...+....++.....+-+.......+.++
T Consensus 217 ~vpg~~---------------------------------------PvEi~Yt~e~erDylEaairtV~qih~~ee~GDil 257 (699)
T KOG0925|consen 217 AVPGTH---------------------------------------PVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDIL 257 (699)
T ss_pred ecCCCC---------------------------------------ceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEE
Confidence 333210 01112222333444555444443333345578999
Q ss_pred EEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhh---cC--CCcEEEEeccccc
Q 013392 324 VFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFK---TE--KKALLLSTDVAAR 398 (444)
Q Consensus 324 vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~---~g--~~~iLi~t~~~~~ 398 (444)
+|....++.+..++.+.... +......+..++..++ +.++.++++--- +| ..+|+|+|++++.
T Consensus 258 vFLtgeeeIe~aC~~i~re~--------~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaet 325 (699)
T KOG0925|consen 258 VFLTGEEEIEDACRKISREV--------DNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAET 325 (699)
T ss_pred EEecCHHHHHHHHHHHHHHH--------HhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchhe
Confidence 99999998888777765421 1111223355666676 333333333221 12 2579999999999
Q ss_pred CCCCCCCcEEEEcc------------------CCCCcchhhhcccccccCCCcccccce
Q 013392 399 GLDFPKVKCIIQYD------------------SAGEATEYVHRYLKHLPVGNFYFNIPL 439 (444)
Q Consensus 399 G~di~~~~~vi~~~------------------~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 439 (444)
.+.++.+.+||+-+ .|-|..+=.||.||+||. ++|+|.++
T Consensus 326 sltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrL 383 (699)
T KOG0925|consen 326 SLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRL 383 (699)
T ss_pred eeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEe
Confidence 99999999999766 233455668999999984 78888765
No 142
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.71 E-value=1.8e-16 Score=143.52 Aligned_cols=269 Identities=18% Similarity=0.169 Sum_probs=165.6
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchh
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS 135 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (444)
++-++-+|||.||||.-|+. ++.. ....++--|.+-|+.++++++++.+- .+.+..|.+..
T Consensus 191 RkIi~H~GPTNSGKTy~ALq----rl~~---------aksGvycGPLrLLA~EV~~r~na~gi------pCdL~TGeE~~ 251 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQ----RLKS---------AKSGVYCGPLRLLAHEVYDRLNALGI------PCDLLTGEERR 251 (700)
T ss_pred heEEEEeCCCCCchhHHHHH----HHhh---------hccceecchHHHHHHHHHHHhhhcCC------Cccccccceee
Confidence 44567789999999987554 4333 33379999999999999999998642 23344444333
Q ss_pred HHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 013392 136 KEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVK 215 (444)
Q Consensus 136 ~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 215 (444)
..... .+.++.+-||.+++-- -..+++.|+||++.+.+.+.+-.+...+..+.....
T Consensus 252 ~~~~~-~~~a~hvScTVEM~sv---------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEi------------- 308 (700)
T KOG0953|consen 252 FVLDN-GNPAQHVSCTVEMVSV---------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEI------------- 308 (700)
T ss_pred ecCCC-CCcccceEEEEEEeec---------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhh-------------
Confidence 22221 2346788888776521 136789999999987777665555444433322110
Q ss_pred eeEEEEEeecchhhHHHHHhhc---CCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCcccccccccee
Q 013392 216 RQNLLLSATLNEKVNHLAKISL---ETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQ 292 (444)
Q Consensus 216 ~~~i~~Sat~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (444)
. ++ + .+..-.+.+..+ ++-..+ +
T Consensus 309 -H--LC-G--epsvldlV~~i~k~TGd~vev------------------------------------------------~ 334 (700)
T KOG0953|consen 309 -H--LC-G--EPSVLDLVRKILKMTGDDVEV------------------------------------------------R 334 (700)
T ss_pred -h--cc-C--CchHHHHHHHHHhhcCCeeEE------------------------------------------------E
Confidence 0 00 0 111111111111 111110 1
Q ss_pred eEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCH
Q 013392 293 RYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQ 372 (444)
Q Consensus 293 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (444)
.|.....-.-.+.+..-+.. ..++..++.|. ++..-.+...+.+.+ +.++++++|++++
T Consensus 335 ~YeRl~pL~v~~~~~~sl~n---lk~GDCvV~FS--kk~I~~~k~kIE~~g----------------~~k~aVIYGsLPP 393 (700)
T KOG0953|consen 335 EYERLSPLVVEETALGSLSN---LKPGDCVVAFS--KKDIFTVKKKIEKAG----------------NHKCAVIYGSLPP 393 (700)
T ss_pred eecccCcceehhhhhhhhcc---CCCCCeEEEee--hhhHHHHHHHHHHhc----------------CcceEEEecCCCC
Confidence 11111111111112222332 24455555444 555566666666653 5679999999999
Q ss_pred HHHHHHHHHhhc--CCCcEEEEecccccCCCCCCCcEEEEccCC---------CCcchhhhcccccccCCCcccccceEE
Q 013392 373 EDRRTTFGAFKT--EKKALLLSTDVAARGLDFPKVKCIIQYDSA---------GEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 373 ~~r~~~~~~f~~--g~~~iLi~t~~~~~G~di~~~~~vi~~~~~---------~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+.|...-..|.+ ++.+||||||+++.|+|+ +++.||++... ....+-.|-.||+||+| .++..+++.
T Consensus 394 eTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~-s~~~~G~vT 471 (700)
T KOG0953|consen 394 ETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFG-SKYPQGEVT 471 (700)
T ss_pred chhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccc-cCCcCceEE
Confidence 999999999997 889999999999999999 99999998754 24567799999999995 455566665
Q ss_pred ee
Q 013392 442 CF 443 (444)
Q Consensus 442 ~~ 443 (444)
||
T Consensus 472 tl 473 (700)
T KOG0953|consen 472 TL 473 (700)
T ss_pred Ee
Confidence 54
No 143
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.71 E-value=2.9e-16 Score=145.77 Aligned_cols=118 Identities=22% Similarity=0.313 Sum_probs=104.6
Q ss_pred CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
.+.|+..|..+|..+ ...++++++|..-.+....+.++|.-. +++...+.|+....+|.++
T Consensus 1026 dSgKL~~LDeLL~kL--kaegHRvL~yfQMTkM~dl~EdYl~yr-----------------~Y~ylRLDGSsk~~dRrd~ 1086 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKL--KAEGHRVLMYFQMTKMIDLIEDYLVYR-----------------GYTYLRLDGSSKASDRRDV 1086 (1185)
T ss_pred cccceeeHHHHHHHh--hcCCceEEehhHHHHHHHHHHHHHHhh-----------------ccceEEecCcchhhHHHHH
Confidence 466777888887776 467899999999888888888888776 8899999999999999999
Q ss_pred HHHhhcCC-CcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCccc
Q 013392 379 FGAFKTEK-KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYF 435 (444)
Q Consensus 379 ~~~f~~g~-~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~ 435 (444)
++.|+..+ .-+|++|.+.+-|+|+..++.||+|+..|++..-.|.+.|++|.||+-.
T Consensus 1087 vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrd 1144 (1185)
T KOG0388|consen 1087 VRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRD 1144 (1185)
T ss_pred HhhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccc
Confidence 99999865 4468889999999999999999999999999999999999999999764
No 144
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.69 E-value=6.6e-14 Score=134.83 Aligned_cols=60 Identities=27% Similarity=0.360 Sum_probs=50.1
Q ss_pred HhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 51 PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 51 ~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
+.+.+++.+++.++||+|||++|+++++..+.. ..+.+++|++||++|..|+.+.+..+.
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-------~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-------RPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-------ccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 334467889999999999999999999887753 235679999999999999998877665
No 145
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.68 E-value=4.2e-16 Score=144.67 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=98.4
Q ss_pred cCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHH
Q 013392 297 VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR 376 (444)
Q Consensus 297 ~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 376 (444)
...+.|.......+++. ......+++|..........+...+.+. |.....++|.....+|+
T Consensus 725 ~r~S~Ki~~~l~~le~i-~~~skeK~viVSQwtsvLniv~~hi~~~-----------------g~~y~si~Gqv~vK~Rq 786 (901)
T KOG4439|consen 725 DRPSCKIAMVLEILETI-LTSSKEKVVIVSQWTSVLNIVRKHIQKG-----------------GHIYTSITGQVLVKDRQ 786 (901)
T ss_pred ccchhHHHHHHHHHHHH-hhcccceeeehhHHHHHHHHHHHHHhhC-----------------CeeeeeecCccchhHHH
Confidence 33567888888888876 3455668877776666667777777776 77888899999999999
Q ss_pred HHHHHhhc--CCCcE-EEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccc
Q 013392 377 TTFGAFKT--EKKAL-LLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFN 436 (444)
Q Consensus 377 ~~~~~f~~--g~~~i-Li~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~ 436 (444)
.+++.|.. |..+| |++-.+.+.|+|+-..+++|.+|.-||+.--.|...|..|+||+.-+
T Consensus 787 ~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V 849 (901)
T KOG4439|consen 787 EIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDV 849 (901)
T ss_pred HHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCce
Confidence 99999974 43454 55566778999999999999999999999999999999999987643
No 146
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.68 E-value=1.9e-14 Score=147.62 Aligned_cols=114 Identities=14% Similarity=0.206 Sum_probs=80.4
Q ss_pred HHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhh
Q 013392 304 AVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFK 383 (444)
Q Consensus 304 ~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~ 383 (444)
..+...|..... ..+++++|+++|.+..+.+++.+..... ......+.-+++...|.++++.|+
T Consensus 738 ~~la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~---------------~~~~~ll~Qg~~~~~r~~l~~~F~ 801 (928)
T PRK08074 738 EEVAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEE---------------LEGYVLLAQGVSSGSRARLTKQFQ 801 (928)
T ss_pred HHHHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhccc---------------ccCceEEecCCCCCCHHHHHHHHH
Confidence 344444544432 3456999999999999999999875421 011122222344456788999999
Q ss_pred cCCCcEEEEecccccCCCCCC--CcEEEEccCCCC------------------------------cchhhhcccccccCC
Q 013392 384 TEKKALLLSTDVAARGLDFPK--VKCIIQYDSAGE------------------------------ATEYVHRYLKHLPVG 431 (444)
Q Consensus 384 ~g~~~iLi~t~~~~~G~di~~--~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g 431 (444)
+++..||++|..+.+|+|+|+ +++||+.+.|.. ...+.|.+||..|..
T Consensus 802 ~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~ 881 (928)
T PRK08074 802 QFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTE 881 (928)
T ss_pred hcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccC
Confidence 988899999999999999995 688888776641 124489999999976
Q ss_pred Cc
Q 013392 432 NF 433 (444)
Q Consensus 432 ~~ 433 (444)
++
T Consensus 882 ~D 883 (928)
T PRK08074 882 TD 883 (928)
T ss_pred Cc
Confidence 43
No 147
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.67 E-value=1.4e-16 Score=153.26 Aligned_cols=348 Identities=17% Similarity=0.220 Sum_probs=208.0
Q ss_pred CCCHHHHhHHHhHh----cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.+++||.+.++++. ++-+.|+...||.|||...+..+...+..... .+-.||+||+..|.+ |..++.+|
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~------~GP~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQM------QGPFLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHccc------CCCeEEeccccccCC-chhhcccc
Confidence 49999999999977 34578999999999998776655555544222 222788999988887 67778887
Q ss_pred hcccCceeeEEEeCCcchhH---HHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHH
Q 013392 117 LHRFHWIVPGYVMGGENRSK---EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193 (444)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~ 193 (444)
.+ ......+.|..... ..+....+.+|+++|++.+.. ....+.--+|.++|+||.|+|... .......+
T Consensus 467 aP----Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKNa-~~KLt~~L 538 (1157)
T KOG0386|consen 467 AP----SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKNA-ICKLTDTL 538 (1157)
T ss_pred cc----ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccch-hhHHHHHh
Confidence 65 33344444433221 122233668999999998865 101111136789999999997552 22222222
Q ss_pred HHHhcCCCCCCCCCCCcccccceeEEEEEeecc-hhhHHHHHhh-cCCCeEEcc----------------cCcCC-----
Q 013392 194 LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN-EKVNHLAKIS-LETPVLIGL----------------DEKKL----- 250 (444)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~-~~~~~~~~~~-~~~~~~~~~----------------~~~~~----- 250 (444)
..... ....+++|+|+- +...++..++ +-.|.++.. ...++
T Consensus 539 ~t~y~----------------~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEt 602 (1157)
T KOG0386|consen 539 NTHYR----------------AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEET 602 (1157)
T ss_pred hcccc----------------chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHH
Confidence 21111 334455566752 2222211111 001110000 00000
Q ss_pred ---------------------------CCCcc---cccccCcccccccccc-CCCcc-------ccccCcc---cccccc
Q 013392 251 ---------------------------PEDKS---HVRFGSLESDVKEEVE-HPSTT-------MRSTTED---FKLPAQ 289 (444)
Q Consensus 251 ---------------------------~~~~~---~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~---~~~~~~ 289 (444)
|.... .+.+............ .+... ....... +.+.+.
T Consensus 603 lLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKi 682 (1157)
T KOG0386|consen 603 LLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKL 682 (1157)
T ss_pred HHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHh
Confidence 00000 0000000000000000 00000 0000000 000111
Q ss_pred ceeeEEE----------------cCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHH
Q 013392 290 LVQRYVK----------------VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDME 353 (444)
Q Consensus 290 ~~~~~~~----------------~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 353 (444)
.+|-+.+ +....|.+.+..++-.+ ...+++++.|+.-......+.++|.-.
T Consensus 683 CNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKL--katgHRVLlF~qMTrlmdimEdyL~~~----------- 749 (1157)
T KOG0386|consen 683 CNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKL--KATGHRVLLFSQMTRLMDILEDYLQIR----------- 749 (1157)
T ss_pred cCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHH--HhcCcchhhHHHHHHHHHHHHHHHhhh-----------
Confidence 1111111 12355777777777766 466899999998888888888888655
Q ss_pred HHHhhhccceEEEecCCCHHHHHHHHHHhhcCC---CcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccC
Q 013392 354 LKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK---KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPV 430 (444)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 430 (444)
++....+.|....++|...++.|...+ ..+|.+|.+.+.|+|+..++.||+|+..|++....|+-.|+.|.
T Consensus 750 ------~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahri 823 (1157)
T KOG0386|consen 750 ------EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRI 823 (1157)
T ss_pred ------hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHh
Confidence 889999999999999999999998654 44788899999999999999999999999999999999999999
Q ss_pred CCcccccc
Q 013392 431 GNFYFNIP 438 (444)
Q Consensus 431 g~~g~~~~ 438 (444)
|++.-+-.
T Consensus 824 gq~~evRv 831 (1157)
T KOG0386|consen 824 GQKKEVRV 831 (1157)
T ss_pred hchhheee
Confidence 98765433
No 148
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.66 E-value=2.6e-15 Score=146.22 Aligned_cols=117 Identities=20% Similarity=0.298 Sum_probs=102.6
Q ss_pred CcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHH
Q 013392 301 SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFG 380 (444)
Q Consensus 301 ~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 380 (444)
.|+..|.-+|+.+ ...++++|||+.-....+.+..+|+-+ |+..+.+.|..+.++|+..++
T Consensus 1260 GKLQtLAiLLqQL--k~eghRvLIfTQMtkmLDVLeqFLnyH-----------------gylY~RLDg~t~vEqRQaLme 1320 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQL--KSEGHRVLIFTQMTKMLDVLEQFLNYH-----------------GYLYVRLDGNTSVEQRQALME 1320 (1958)
T ss_pred chHHHHHHHHHHH--HhcCceEEehhHHHHHHHHHHHHHhhc-----------------ceEEEEecCCccHHHHHHHHH
Confidence 4777777777777 366899999999888888888888777 889999999999999999999
Q ss_pred HhhcCC--CcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccc
Q 013392 381 AFKTEK--KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFN 436 (444)
Q Consensus 381 ~f~~g~--~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~ 436 (444)
.|..+. ...|++|...+.|||+..++.||+||..||+.--.|.-.||.|.|+.-.+
T Consensus 1321 rFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDV 1378 (1958)
T KOG0391|consen 1321 RFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 1378 (1958)
T ss_pred HhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccce
Confidence 999765 45677899999999999999999999999999889999999999986543
No 149
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=6.9e-15 Score=144.45 Aligned_cols=124 Identities=12% Similarity=0.073 Sum_probs=96.6
Q ss_pred cCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHH
Q 013392 297 VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR 376 (444)
Q Consensus 297 ~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 376 (444)
.....|...+...+.+.. ..+.|+||-+.+++..+.++++|... +++.-++++.....+..
T Consensus 608 ~t~~eK~~Aii~ei~~~~--~~GrPVLVGT~SVe~SE~lS~~L~~~-----------------gI~H~VLNAK~h~~EAe 668 (1112)
T PRK12901 608 KTKREKYNAVIEEITELS--EAGRPVLVGTTSVEISELLSRMLKMR-----------------KIPHNVLNAKLHQKEAE 668 (1112)
T ss_pred cCHHHHHHHHHHHHHHHH--HCCCCEEEEeCcHHHHHHHHHHHHHc-----------------CCcHHHhhccchhhHHH
Confidence 344567778888777764 56889999999999999999999987 66655666665555555
Q ss_pred HHHHHhhcCCCcEEEEecccccCCCCC--------CCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 377 TTFGAFKTEKKALLLSTDVAARGLDFP--------KVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 377 ~~~~~f~~g~~~iLi~t~~~~~G~di~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
-+-++-+.| .|-|||+|+++|.||. .==+||--..+.|.+---|-.||+||.|.+|.+-.|++
T Consensus 669 IVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 669 IVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred HHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEE
Confidence 555554444 7899999999999995 11245666678888888999999999999999887775
No 150
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.66 E-value=6.4e-15 Score=150.07 Aligned_cols=353 Identities=18% Similarity=0.144 Sum_probs=187.8
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (444)
+..+|+..||||||++.+..+-..... ...++++||+.+++|-.|..+++..+....... . ...+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~----~-~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFND----P-KAESTSE 341 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhc----c-cccCHHH
Confidence 468999999999999988877666555 457789999999999999999999987643211 1 3444555
Q ss_pred HHHHhcCC-CcEEEeCchHHHHHHhccC--ccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccc
Q 013392 137 EKARLRKG-ISILVATPGRLLDHLKHTS--SFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSN 213 (444)
Q Consensus 137 ~~~~~~~~-~~iii~T~~~l~~~l~~~~--~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 213 (444)
..+.+.+. ..|+|+|.++|-....... ...-..+ +||+||||+... +.....+...++
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~i-vvI~DEaHRSQ~---G~~~~~~~~~~~--------------- 402 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNV-VVIIDEAHRSQY---GELAKLLKKALK--------------- 402 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcE-EEEEechhhccc---cHHHHHHHHHhc---------------
Confidence 55556544 4899999999988776531 1122233 999999998643 344444444443
Q ss_pred cceeEEEEEeecchhhHHH-HHhhcCCCeEEcccCcCCCCCcc-cccccCc-c-----ccccccccCCCccccccCcc--
Q 013392 214 VKRQNLLLSATLNEKVNHL-AKISLETPVLIGLDEKKLPEDKS-HVRFGSL-E-----SDVKEEVEHPSTTMRSTTED-- 283 (444)
Q Consensus 214 ~~~~~i~~Sat~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~-- 283 (444)
....++||+||--....- -....+.+.......+.+..... .+.|... . ....+...............
T Consensus 403 -~a~~~gFTGTPi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (962)
T COG0610 403 -KAIFIGFTGTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDIL 481 (962)
T ss_pred -cceEEEeeCCccccccccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHH
Confidence 568899999984322222 12222222222222111111111 1111111 0 00000000000000000000
Q ss_pred ccccccceee-EEEcCCCCcHHHHHHHHHhhcc-cccCceEEEEecccchhhhhhhhhhhcccCCCCCc--hHHHHHhhh
Q 013392 284 FKLPAQLVQR-YVKVPCGSRLAVLLSILKHLFD-TEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQP--DMELKQLFL 359 (444)
Q Consensus 284 ~~~~~~~~~~-~~~~~~~~k~~~l~~~l~~~~~-~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~ 359 (444)
.......... +.............++...+.. .....++.+.+.++..+..+++.........+... ...+...-.
T Consensus 482 ~~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 561 (962)
T COG0610 482 EKIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNT 561 (962)
T ss_pred HHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHh
Confidence 0000000000 1111111122222223333322 34567888888888866666655444332221111 111111111
Q ss_pred ccceEE----EecCCCHHHHHHHHHHh--hcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCc
Q 013392 360 RCKTFR----LHGNMKQEDRRTTFGAF--KTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNF 433 (444)
Q Consensus 360 ~~~~~~----~~~~~~~~~r~~~~~~f--~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~ 433 (444)
+..... .|.. ....+......| .+...++||.++|+-+|+|.|.++.+. ++.|.-....+|.+.|+.|.=..
T Consensus 562 ~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~ 639 (962)
T COG0610 562 EFETDFDKKQSHAK-LKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPG 639 (962)
T ss_pred hcccchhhhhhhHH-HHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCC
Confidence 111100 0111 222333444443 456799999999999999999888754 55668888999999999995332
Q ss_pred ccccceEEee
Q 013392 434 YFNIPLIVCF 443 (444)
Q Consensus 434 g~~~~~i~~~ 443 (444)
-+-.++|++|
T Consensus 640 ~K~~G~IVDf 649 (962)
T COG0610 640 KKKFGLIVDF 649 (962)
T ss_pred CCCCcEEEEC
Confidence 2677788877
No 151
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.64 E-value=9e-15 Score=143.89 Aligned_cols=348 Identities=15% Similarity=0.134 Sum_probs=221.2
Q ss_pred ccchhhhhhccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHh-cCCcEEEEcCCCCchhHHhHHHHHHHHhc
Q 013392 5 SKKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQS 83 (444)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~-~~~~~il~~~tG~GKT~~~~~~~~~~~~~ 83 (444)
+++--+-++++...+..-+++.......+. ...++.|.+.++.+. +++++++.+|+|+|||.++-++++. .
T Consensus 1112 pek~p~pt~lld~~~~~~~~l~N~~~~~lf-----~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~ 1183 (1674)
T KOG0951|consen 1112 PEKYPPPTELLDLQPLPVSALRNPSFETLF-----QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---P 1183 (1674)
T ss_pred cccCCCCchhhhccccchhccCCcchhhhc-----cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---C
Confidence 344445567777777777778777777773 224899999998877 5678999999999999998887766 1
Q ss_pred cCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccC
Q 013392 84 YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS 163 (444)
Q Consensus 84 ~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~ 163 (444)
....++++++|..+.+..+++.+.+-+....+.....+.+....+. ++....+++|+||+++-.+ +
T Consensus 1184 -------~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q--- 1249 (1674)
T KOG0951|consen 1184 -------DTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q--- 1249 (1674)
T ss_pred -------ccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccch---HHhhhcceEEechhHHHHH-h---
Confidence 3466799999999999888776665555445555555555444332 2334457999999987654 2
Q ss_pred ccccCCccEEEEechhHhhhcchhH------HHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhc
Q 013392 164 SFLHTNLRWIIFDEADRILELGFGK------EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL 237 (444)
Q Consensus 164 ~~~~~~~~lvV~DE~h~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~ 237 (444)
..+.+++.|+||.|.+. ...+. .+..+..++.+ ..+++.+|..+.+.-.. .+.
T Consensus 1250 --~iQ~v~l~i~d~lh~ig-g~~g~v~evi~S~r~ia~q~~k---------------~ir~v~ls~~lana~d~---ig~ 1308 (1674)
T KOG0951|consen 1250 --SIQQVDLFIVDELHLIG-GVYGAVYEVICSMRYIASQLEK---------------KIRVVALSSSLANARDL---IGA 1308 (1674)
T ss_pred --hhhhcceEeeehhhhhc-ccCCceEEEEeeHHHHHHHHHh---------------heeEEEeehhhccchhh---ccc
Confidence 34578999999999765 32221 25667777766 77889998887764332 333
Q ss_pred CCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEE-EcCCCC----cHHHHHHHHHh
Q 013392 238 ETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYV-KVPCGS----RLAVLLSILKH 312 (444)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----k~~~l~~~l~~ 312 (444)
.....+.+.++..+.. ..++-... .....+ -.......+..
T Consensus 1309 s~~~v~Nf~p~~R~~P----------------------------------l~i~i~~~~~~~~~~~~~am~~~~~~ai~~ 1354 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVP----------------------------------LEIHIQSVDISHFESRMLAMTKPTYTAIVR 1354 (1674)
T ss_pred cccceeecCcccCCCc----------------------------------eeEEEEEeccchhHHHHHHhhhhHHHHHHH
Confidence 3333333333321111 00110000 011111 11122223333
Q ss_pred hcccccCceEEEEecccchhhhhhhhhhhcccCCC--------CCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhc
Q 013392 313 LFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPH--------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT 384 (444)
Q Consensus 313 ~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 384 (444)
+ ...+.+.+||+++++++..++.-+-...+... +.-+..... ..+..+-|-+++..+...+.+-|..
T Consensus 1355 ~--a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e---~l~~gvg~e~~s~~d~~iv~~l~e~ 1429 (1674)
T KOG0951|consen 1355 H--AGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRE---SLKHGVGHEGLSSNDQEIVQQLFEA 1429 (1674)
T ss_pred H--hcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhh---cccccccccccCcchHHHHHHHHhc
Confidence 3 35678999999999999998876654433220 000111111 2222333888999999999999999
Q ss_pred CCCcEEEEecccccCCCCCCCcEEEEcc-----------CCCCcchhhhcccccccCCCcccccce
Q 013392 385 EKKALLLSTDVAARGLDFPKVKCIIQYD-----------SAGEATEYVHRYLKHLPVGNFYFNIPL 439 (444)
Q Consensus 385 g~~~iLi~t~~~~~G~di~~~~~vi~~~-----------~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 439 (444)
|.+.++|.... ..|+-. ..+.|+.+| .+.......|++|++.|+ |+|+.+
T Consensus 1430 g~i~v~v~s~~-~~~~~~-~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~ 1490 (1674)
T KOG0951|consen 1430 GAIQVCVMSRD-CYGTKL-KAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIM 1490 (1674)
T ss_pred CcEEEEEEEcc-cccccc-cceEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEE
Confidence 99999999877 778777 455565443 233467789999999984 555544
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.63 E-value=1.3e-13 Score=138.38 Aligned_cols=72 Identities=28% Similarity=0.358 Sum_probs=58.9
Q ss_pred cCCCCCCHHHHhHHHhHh----cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHH
Q 013392 37 LGFEAPTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (444)
Q Consensus 37 ~~~~~~~~~Q~~~~~~~~----~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 112 (444)
+...++|+.|.+.+..+. +++.+++.+|||+|||++++.+++..... .+.++++.++|+.+..|..++
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~--------~~~~viist~t~~lq~q~~~~ 82 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE--------EGKKVIISTRTKALQEQLLEE 82 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH--------cCCcEEEECCCHHHHHHHHHh
Confidence 333459999999886654 45669999999999999999999998866 236699999999999999888
Q ss_pred HHHH
Q 013392 113 LHKL 116 (444)
Q Consensus 113 l~~~ 116 (444)
...+
T Consensus 83 ~~~~ 86 (654)
T COG1199 83 DLPI 86 (654)
T ss_pred hcch
Confidence 6554
No 153
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.62 E-value=1.6e-15 Score=108.87 Aligned_cols=72 Identities=38% Similarity=0.587 Sum_probs=69.9
Q ss_pred ccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCC
Q 013392 360 RCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVG 431 (444)
Q Consensus 360 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 431 (444)
++.+..+||+++..+|..+++.|.++...+||+|+++++|+|+|.++.|+++++|++...|.|++||++|.|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 778999999999999999999999999999999999999999999999999999999999999999999976
No 154
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.61 E-value=2.3e-14 Score=137.24 Aligned_cols=138 Identities=18% Similarity=0.259 Sum_probs=109.4
Q ss_pred CCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHH-----hhhccceEEEecCCCH
Q 013392 298 PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQ-----LFLRCKTFRLHGNMKQ 372 (444)
Q Consensus 298 ~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 372 (444)
..+.|+-.|+.+|+.+ ...+.+.|||..+......|..+|...........+..... -..|.....+.|....
T Consensus 1123 ~~SgKmiLLleIL~mc--eeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s 1200 (1567)
T KOG1015|consen 1123 EHSGKMILLLEILRMC--EEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTS 1200 (1567)
T ss_pred hcCcceehHHHHHHHH--HHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccH
Confidence 3467888889998877 35688999999999999999988866544333222111111 1236677889999999
Q ss_pred HHHHHHHHHhhcCC-C---cEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCccccc
Q 013392 373 EDRRTTFGAFKTEK-K---ALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNI 437 (444)
Q Consensus 373 ~~r~~~~~~f~~g~-~---~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~ 437 (444)
..|....+.|.+-. . -.||+|.+.+-|+|+-.++.||+|+..||+..-.|.+=|+.|+||+-=+|
T Consensus 1201 ~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvy 1269 (1567)
T KOG1015|consen 1201 QSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVY 1269 (1567)
T ss_pred HHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCcee
Confidence 99999999998632 2 37999999999999999999999999999999999999999999976554
No 155
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.61 E-value=3.6e-13 Score=135.09 Aligned_cols=74 Identities=23% Similarity=0.222 Sum_probs=62.2
Q ss_pred cCCCCCCHHHHhHHHhHh----cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHH
Q 013392 37 LGFEAPTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (444)
Q Consensus 37 ~~~~~~~~~Q~~~~~~~~----~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 112 (444)
|+|..+||.|.+.++.+. .++++++.+|||+|||++.+.+++...... +...++++.+.|.+-..|..++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~------~~~~kIiy~sRThsQl~q~i~E 79 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK------PEVRKIIYASRTHSQLEQATEE 79 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc------cccccEEEEcccchHHHHHHHH
Confidence 678867999999887655 778999999999999999999998876542 2236799999999999999999
Q ss_pred HHHH
Q 013392 113 LHKL 116 (444)
Q Consensus 113 l~~~ 116 (444)
+++.
T Consensus 80 lk~~ 83 (705)
T TIGR00604 80 LRKL 83 (705)
T ss_pred HHhh
Confidence 9884
No 156
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.59 E-value=8.4e-14 Score=137.60 Aligned_cols=100 Identities=10% Similarity=-0.052 Sum_probs=73.6
Q ss_pred eEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHh------------------
Q 013392 321 KLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAF------------------ 382 (444)
Q Consensus 321 ~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f------------------ 382 (444)
=.+|-+.+++.+-.++..|........ ..+.+.++|+......|..+.+..
T Consensus 758 fGliR~anI~p~V~~A~~L~~~~~~~~-----------~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i 826 (1110)
T TIGR02562 758 VGLIRVANIDPLIRLAQFLYALLAEEK-----------YQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEI 826 (1110)
T ss_pred EEEEEEcCchHHHHHHHHHHhhccccC-----------CceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHH
Confidence 357778888888888777765533221 145678899998777777666553
Q ss_pred ----hc----CCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcc
Q 013392 383 ----KT----EKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFY 434 (444)
Q Consensus 383 ----~~----g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g 434 (444)
.+ +...|+|+|++.+.|+|+ +.+.+|.- +.++...+|++||+.|.|..-
T Consensus 827 ~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~~--~~~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 827 IDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIAD--PSSMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred HHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeeec--cCcHHHHHHHhhcccccccCC
Confidence 11 356799999999999999 77877654 455889999999999988643
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.59 E-value=6.1e-14 Score=136.86 Aligned_cols=300 Identities=13% Similarity=0.029 Sum_probs=169.5
Q ss_pred EEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchh----
Q 013392 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS---- 135 (444)
Q Consensus 60 il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---- 135 (444)
+..+.+|||||.+|+-++...+.. ++.+|+++|...|..|+.+.+++.++. .....++++....
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~---------Gk~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~ 231 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA---------GRGALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYR 231 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc---------CCeEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHH
Confidence 444446999999999888777754 667999999999999999999998752 2234455544433
Q ss_pred HHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcc------hhHHHHHHHHHhcCCCCCCCCCCC
Q 013392 136 KEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG------FGKEIEEILDILGSRNIGSIGEGN 209 (444)
Q Consensus 136 ~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~ 209 (444)
.+.....++.+|+|+|...++- .+.++++||+||-|.-.-.+ +.+.+..+.....
T Consensus 232 ~w~~~~~G~~~IViGtRSAvFa--------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~----------- 292 (665)
T PRK14873 232 RWLAVLRGQARVVVGTRSAVFA--------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQH----------- 292 (665)
T ss_pred HHHHHhCCCCcEEEEcceeEEe--------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHc-----------
Confidence 2333345558999999655544 44589999999999642221 1233333333322
Q ss_pred cccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCcccccccc
Q 013392 210 EVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQ 289 (444)
Q Consensus 210 ~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (444)
...+++.|||++-......... ....+.............+..-++... .
T Consensus 293 -----~~~lvLgSaTPSles~~~~~~g--~~~~~~~~~~~~~~~~P~v~~vd~~~~-----------------------~ 342 (665)
T PRK14873 293 -----GCALLIGGHARTAEAQALVESG--WAHDLVAPRPVVRARAPRVRALGDSGL-----------------------A 342 (665)
T ss_pred -----CCcEEEECCCCCHHHHHHHhcC--cceeeccccccccCCCCeEEEEeCchh-----------------------h
Confidence 7788999999876554443322 122111111110000011110000000 0
Q ss_pred ceeeEEEcC-CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhh---------------------------
Q 013392 290 LVQRYVKVP-CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE--------------------------- 341 (444)
Q Consensus 290 ~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~--------------------------- 341 (444)
.. ..... ...-...+...+++.. ..+ ++|||.|.+-.+..+...=+.
T Consensus 343 ~~--~~~~~~g~~ls~~l~~~i~~~L--~~g-qvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG 417 (665)
T PRK14873 343 LE--RDPAARAARLPSLAFRAARDAL--EHG-PVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCG 417 (665)
T ss_pred hc--cccccccCccCHHHHHHHHHHH--hcC-cEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCc
Confidence 00 00000 0011234455555543 345 888887755543332211000
Q ss_pred ccc-----CCC------------CCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEec----ccccCC
Q 013392 342 FQW-----SPH------------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD----VAARGL 400 (444)
Q Consensus 342 ~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~----~~~~G~ 400 (444)
... +.+ +..+++....|++.++..+.++ .+++.|. ++.+|||+|. ++.
T Consensus 418 ~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d-------~~l~~~~-~~~~IlVGTqgaepm~~--- 486 (665)
T PRK14873 418 RAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGD-------QVVDTVD-AGPALVVATPGAEPRVE--- 486 (665)
T ss_pred CCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChH-------HHHHhhc-cCCCEEEECCCCccccc---
Confidence 000 000 1116677778999888876653 3788886 5899999999 554
Q ss_pred CCCCCcEEEEccCCC------------CcchhhhcccccccCCCcccccc
Q 013392 401 DFPKVKCIIQYDSAG------------EATEYVHRYLKHLPVGNFYFNIP 438 (444)
Q Consensus 401 di~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~g~~g~~~~ 438 (444)
++++.|+.++... ....+.|..||+||.++.|.++.
T Consensus 487 --g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~i 534 (665)
T PRK14873 487 --GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVV 534 (665)
T ss_pred --CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEE
Confidence 3567776655321 12345889999999888887663
No 158
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.55 E-value=5.2e-12 Score=125.78 Aligned_cols=108 Identities=17% Similarity=0.229 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHh
Q 013392 303 LAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAF 382 (444)
Q Consensus 303 ~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f 382 (444)
...+.+.|..+.. .++.++|+++|....+.+++.+.... +.. ....|. ..+..+++.|
T Consensus 520 ~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~----------------~~~-ll~Q~~---~~~~~ll~~f 577 (697)
T PRK11747 520 TAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDL----------------RLM-LLVQGD---QPRQRLLEKH 577 (697)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhc----------------CCc-EEEeCC---chHHHHHHHH
Confidence 3455555656554 34458999999999999998886421 233 333443 2466777777
Q ss_pred hc----CCCcEEEEecccccCCCCCC--CcEEEEccCCCC-c-----------------------------chhhhcccc
Q 013392 383 KT----EKKALLLSTDVAARGLDFPK--VKCIIQYDSAGE-A-----------------------------TEYVHRYLK 426 (444)
Q Consensus 383 ~~----g~~~iLi~t~~~~~G~di~~--~~~vi~~~~~~s-~-----------------------------~~~~Q~~GR 426 (444)
++ |+..||++|..+.+|||+|+ +++||+.+.|.. + ..+.|.+||
T Consensus 578 ~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GR 657 (697)
T PRK11747 578 KKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGR 657 (697)
T ss_pred HHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcc
Confidence 63 67789999999999999985 889998876632 1 244899999
Q ss_pred cccCCC
Q 013392 427 HLPVGN 432 (444)
Q Consensus 427 ~~R~g~ 432 (444)
..|..+
T Consensus 658 lIRs~~ 663 (697)
T PRK11747 658 LIRSEQ 663 (697)
T ss_pred ccccCC
Confidence 999654
No 159
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.55 E-value=4e-13 Score=120.44 Aligned_cols=119 Identities=17% Similarity=0.206 Sum_probs=101.1
Q ss_pred CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
.+.|.++|...|..+.+.....+.|||.........+...|.+. |..++.+.|+|+...|...
T Consensus 618 sSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~ka-----------------GfscVkL~GsMs~~ardat 680 (791)
T KOG1002|consen 618 SSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKA-----------------GFSCVKLVGSMSPAARDAT 680 (791)
T ss_pred chhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhcc-----------------CceEEEeccCCChHHHHHH
Confidence 35688888887777666677789999998888888888888777 8999999999999999999
Q ss_pred HHHhhcCC-CcE-EEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcc
Q 013392 379 FGAFKTEK-KAL-LLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFY 434 (444)
Q Consensus 379 ~~~f~~g~-~~i-Li~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g 434 (444)
++.|.++. ++| |++-.+.+.-+|+..++.|+++++=||+..-.|...|..|.||.-
T Consensus 681 ik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~r 738 (791)
T KOG1002|consen 681 IKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYR 738 (791)
T ss_pred HHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCcc
Confidence 99999754 554 455567777899999999999999999999999999999999743
No 160
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.50 E-value=1.5e-11 Score=112.80 Aligned_cols=290 Identities=16% Similarity=0.159 Sum_probs=198.9
Q ss_pred CCceEEEEeccHHHHHHHHHHHHHHhccc-Cc---------e---------eeEEEeCCcchhHHHHHhcC---------
Q 013392 92 SGTFALVLVPTRELCLQVYEILHKLLHRF-HW---------I---------VPGYVMGGENRSKEKARLRK--------- 143 (444)
Q Consensus 92 ~~~~vlil~P~~~L~~q~~~~l~~~~~~~-~~---------~---------~~~~~~~~~~~~~~~~~~~~--------- 143 (444)
..++||||+|++..|.++.+.+.++.... .. . ............+......+
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 46899999999999999999998876531 00 0 00000001122222222211
Q ss_pred ---------------CCcEEEeCchHHHHHHhc-----cCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCC
Q 013392 144 ---------------GISILVATPGRLLDHLKH-----TSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIG 203 (444)
Q Consensus 144 ---------------~~~iii~T~~~l~~~l~~-----~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~ 203 (444)
++||+||+|=-|...+.. ...-.++++.++|+|.+| ++.++.++.+..+++.+...+..
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad-~l~MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQAD-VLLMQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhh-HHHHhhHHHHHHHHHHhccCCCC
Confidence 478999999999888874 123367899999999999 56667888888888888876544
Q ss_pred CCC-C--------CCcccccceeEEEEEeecchhhHHHHHhhcCCCe-EEcccCcCCCCCcccccccCccccccccccCC
Q 013392 204 SIG-E--------GNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV-LIGLDEKKLPEDKSHVRFGSLESDVKEEVEHP 273 (444)
Q Consensus 204 ~~~-~--------~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (444)
..+ + .......-+|.+++|+...+....+....+.+.. .+.+......
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~---------------------- 252 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEA---------------------- 252 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeecccc----------------------
Confidence 433 1 2345677889999999999998888887554432 2222222110
Q ss_pred CccccccCccccccccceeeEEEcCCC-------CcHHHHHH-HHHhhcccccCceEEEEecccchhhhhhhhhhhcccC
Q 013392 274 STTMRSTTEDFKLPAQLVQRYVKVPCG-------SRLAVLLS-ILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWS 345 (444)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~k~~~l~~-~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~ 345 (444)
..........+.+.+..++.+ .+.+.... ++-.+........+|||+++.-+--.+.++|++.
T Consensus 253 ------~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~--- 323 (442)
T PF06862_consen 253 ------SGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE--- 323 (442)
T ss_pred ------ceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc---
Confidence 000012234555666654432 34444433 2222221455689999999999999999999866
Q ss_pred CCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEeccc--ccCCCCCCCcEEEEccCCCCcchhhhc
Q 013392 346 PHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA--ARGLDFPKVKCIIQYDSAGEATEYVHR 423 (444)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~--~~G~di~~~~~vi~~~~~~s~~~~~Q~ 423 (444)
+...+.++--.+..+-.+....|.+|+..+|+.|.-+ -+-..+.+++.||+|++|..+.-|...
T Consensus 324 --------------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El 389 (442)
T PF06862_consen 324 --------------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSEL 389 (442)
T ss_pred --------------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHH
Confidence 8888999999999999999999999999999999975 356788999999999999998877666
Q ss_pred cccc
Q 013392 424 YLKH 427 (444)
Q Consensus 424 ~GR~ 427 (444)
++-.
T Consensus 390 ~n~~ 393 (442)
T PF06862_consen 390 LNML 393 (442)
T ss_pred Hhhh
Confidence 5433
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.50 E-value=3.8e-13 Score=140.57 Aligned_cols=117 Identities=21% Similarity=0.309 Sum_probs=100.8
Q ss_pred CcHHHHHHHH-HhhcccccCc--eEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHH
Q 013392 301 SRLAVLLSIL-KHLFDTEVSQ--KLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (444)
Q Consensus 301 ~k~~~l~~~l-~~~~~~~~~~--~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 377 (444)
.|...+..++ .... ..+. ++++|+........+...+... ++....++|+++...|..
T Consensus 692 ~k~~~l~~ll~~~~~--~~~~~~kvlifsq~t~~l~il~~~l~~~-----------------~~~~~~ldG~~~~~~r~~ 752 (866)
T COG0553 692 GKLQALDELLLDKLL--EEGHYHKVLIFSQFTPVLDLLEDYLKAL-----------------GIKYVRLDGSTPAKRRQE 752 (866)
T ss_pred hHHHHHHHHHHHHHH--hhcccccEEEEeCcHHHHHHHHHHHHhc-----------------CCcEEEEeCCCChhhHHH
Confidence 5677777777 4442 3455 9999999999999999999886 677899999999999999
Q ss_pred HHHHhhcC--CCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccc
Q 013392 378 TFGAFKTE--KKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFN 436 (444)
Q Consensus 378 ~~~~f~~g--~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~ 436 (444)
.++.|.++ ..-+++++.+.+.|+|+..+++||++++.+++....|.+.|+.|.||+..+
T Consensus 753 ~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v 813 (866)
T COG0553 753 LIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPV 813 (866)
T ss_pred HHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCccee
Confidence 99999986 345667788999999999999999999999999999999999999987754
No 162
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.46 E-value=2.5e-13 Score=103.25 Aligned_cols=138 Identities=21% Similarity=0.188 Sum_probs=82.4
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcch
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (444)
.|+-.++...+|+|||.-.+..++..... .+.++|+|.||+.++..+.+.++.. + .. +......
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~----~-~~---~~t~~~~ 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGL----P-VR---FHTNARM 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTS----S-EE---EESTTSS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcC----C-cc---cCceeee
Confidence 45567899999999999777766665544 4677999999999999888877643 1 11 1111111
Q ss_pred hHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCccccc
Q 013392 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214 (444)
Q Consensus 135 ~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 214 (444)
. ....+.-|-++|+..+...+.. .....++++||+|||| +.+.......- .+..+....
T Consensus 67 ~----~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH-~~Dp~sIA~rg-~l~~~~~~g------------- 125 (148)
T PF07652_consen 67 R----THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECH-FTDPTSIAARG-YLRELAESG------------- 125 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT---SHHHHHHHH-HHHHHHHTT-------------
T ss_pred c----cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccc-cCCHHHHhhhe-eHHHhhhcc-------------
Confidence 1 2234556999999998887765 3334689999999999 45543332222 222222111
Q ss_pred ceeEEEEEeecchhh
Q 013392 215 KRQNLLLSATLNEKV 229 (444)
Q Consensus 215 ~~~~i~~Sat~~~~~ 229 (444)
...+|++|||||...
T Consensus 126 ~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 126 EAKVIFMTATPPGSE 140 (148)
T ss_dssp S-EEEEEESS-TT--
T ss_pred CeeEEEEeCCCCCCC
Confidence 467899999998754
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.45 E-value=8.5e-12 Score=120.50 Aligned_cols=311 Identities=16% Similarity=0.174 Sum_probs=176.3
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (444)
.++.+|+|+|||...... +..... .+..++|+|..+++|..+....++...-. ... .+.........
T Consensus 52 ~vVRSpMGTGKTtaLi~w-Lk~~l~-------~~~~~VLvVShRrSL~~sL~~rf~~~~l~--gFv---~Y~d~~~~~i~ 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRW-LKDALK-------NPDKSVLVVSHRRSLTKSLAERFKKAGLS--GFV---NYLDSDDYIID 118 (824)
T ss_pred EEEECCCCCCcHHHHHHH-HHHhcc-------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC--cce---eeecccccccc
Confidence 588899999999755443 333322 24667999999999999999999875321 111 11111100000
Q ss_pred HHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchh------HHHHH-HHHHhcCCCCCCCCCCCcc
Q 013392 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG------KEIEE-ILDILGSRNIGSIGEGNEV 211 (444)
Q Consensus 139 ~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~------~~~~~-~~~~l~~~~~~~~~~~~~~ 211 (444)
....+-+++..++|.+... ..+.++++||+||+-..+..-+. ..... +...+..
T Consensus 119 ---~~~~~rLivqIdSL~R~~~----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~------------ 179 (824)
T PF02399_consen 119 ---GRPYDRLIVQIDSLHRLDG----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN------------ 179 (824)
T ss_pred ---ccccCeEEEEehhhhhccc----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh------------
Confidence 0124577888888876432 23457899999999876554221 12222 3333333
Q ss_pred cccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCC---CCCcccccccCccccccccccCCCccc-cccCcccccc
Q 013392 212 SNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKL---PEDKSHVRFGSLESDVKEEVEHPSTTM-RSTTEDFKLP 287 (444)
Q Consensus 212 ~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 287 (444)
...+|++-|++....-++.....+...+..+..... ...+...-..............+.... .........+
T Consensus 180 ---ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 256 (824)
T PF02399_consen 180 ---AKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSP 256 (824)
T ss_pred ---CCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCC
Confidence 668889999999988888887655443322222211 122222223333322222111111110 0000000011
Q ss_pred ccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEe
Q 013392 288 AQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLH 367 (444)
Q Consensus 288 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (444)
.......+.. ........++..+ ..+.++.||+++...++.+.+..... +.++..++
T Consensus 257 ~~~~~~~~~~---~~~tF~~~L~~~L---~~gknIcvfsSt~~~~~~v~~~~~~~-----------------~~~Vl~l~ 313 (824)
T PF02399_consen 257 DPTATAAISN---DETTFFSELLARL---NAGKNICVFSSTVSFAEIVARFCARF-----------------TKKVLVLN 313 (824)
T ss_pred cccccccccc---chhhHHHHHHHHH---hCCCcEEEEeChHHHHHHHHHHHHhc-----------------CCeEEEEc
Confidence 1111111111 1111222223332 45778899999999999999998876 67788887
Q ss_pred cCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCC--CCcEEEEccCC----CCcchhhhcccccccCCCc
Q 013392 368 GNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP--KVKCIIQYDSA----GEATEYVHRYLKHLPVGNF 433 (444)
Q Consensus 368 ~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~--~~~~vi~~~~~----~s~~~~~Q~~GR~~R~g~~ 433 (444)
+..+.. ++. .| ++.+|+|-|+++..|+++- +.+.|+-|-.| .++.+..|++||+-.....
T Consensus 314 s~~~~~---dv~-~W--~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~ 379 (824)
T PF02399_consen 314 STDKLE---DVE-SW--KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDN 379 (824)
T ss_pred CCCCcc---ccc-cc--cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccC
Confidence 766555 222 22 4689999999999999885 35555555333 2455789999998765443
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.43 E-value=1.5e-12 Score=118.36 Aligned_cols=158 Identities=22% Similarity=0.238 Sum_probs=90.4
Q ss_pred HHHhHHHhHh-------------cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHH
Q 013392 45 VQAQAIPVIL-------------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (444)
Q Consensus 45 ~Q~~~~~~~~-------------~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 111 (444)
||.+++.+++ ..+.++++..+|+|||.+++..+......... .+...+|||+|. .+..||.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~----~~~~~~LIv~P~-~l~~~W~~ 75 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQ----RGEKKTLIVVPS-SLLSQWKE 75 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTT----SS-S-EEEEE-T-TTHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcccc----ccccceeEeecc-chhhhhhh
Confidence 6888887764 23578999999999998877765533322111 112249999999 88899999
Q ss_pred HHHHHhcccCceeeEEEeCCcc-hhHHHHHhcCCCcEEEeCchHHHHHHh--ccCccccCCccEEEEechhHhhhcchhH
Q 013392 112 ILHKLLHRFHWIVPGYVMGGEN-RSKEKARLRKGISILVATPGRLLDHLK--HTSSFLHTNLRWIIFDEADRILELGFGK 188 (444)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iii~T~~~l~~~l~--~~~~~~~~~~~lvV~DE~h~~~~~~~~~ 188 (444)
++.++..... .. .....+.. ............+++|+|++.+..... ....+..-.+++||+||+|.+.+. ..
T Consensus 76 E~~~~~~~~~-~~-v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s 151 (299)
T PF00176_consen 76 EIEKWFDPDS-LR-VIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DS 151 (299)
T ss_dssp HHHHHSGT-T-S--EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TS
T ss_pred hhcccccccc-cc-ccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cc
Confidence 9999985322 23 33333333 222222334557899999999981100 001111135899999999987432 22
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecch
Q 013392 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE 227 (444)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~ 227 (444)
.....+..+. ....+++||||-.
T Consensus 152 ~~~~~l~~l~----------------~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 152 KRYKALRKLR----------------ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHHHCCC----------------ECEEEEE-SS-SS
T ss_pred cccccccccc----------------cceEEeecccccc
Confidence 2223333343 5567889999854
No 165
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=2.7e-11 Score=109.77 Aligned_cols=350 Identities=17% Similarity=0.150 Sum_probs=215.7
Q ss_pred CCCCHHHHhHHHhHhcCCcEEEE-cCCCCch--hHHhHHHHHHHHhccCC----------------------CCCCCCCc
Q 013392 40 EAPTKVQAQAIPVILSGRHVLVN-AATGTGK--TVAYLAPIINHLQSYSP----------------------RIDRSSGT 94 (444)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~il~-~~tG~GK--T~~~~~~~~~~~~~~~~----------------------~~~~~~~~ 94 (444)
..+++.|.+.+..+.+.+|++.. ...+.|+ +.++++-+++++..... .+.--..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 45899999999999999987654 3334555 33566666666533211 01111347
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeE---------EEeC--------CcchhHH--------------------
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPG---------YVMG--------GENRSKE-------------------- 137 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~---------~~~~--------~~~~~~~-------------------- 137 (444)
+||||||+++.+......+..++.....-... -+.+ .....+.
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 99999999999999999988874322110000 0000 0011111
Q ss_pred -HHHh---cCCCcEEEeCchHHHHHHhccC----c-cccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCC-
Q 013392 138 -KARL---RKGISILVATPGRLLDHLKHTS----S-FLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGE- 207 (444)
Q Consensus 138 -~~~~---~~~~~iii~T~~~l~~~l~~~~----~-~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 207 (444)
.-++ ..++||+||+|=-|...+...+ . -.++++.++|+|.+|.+ -.+.+..+..++..+...+....+.
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~-l~QNwEhl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIM-LMQNWEHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHH-HHhhHHHHHHHHHHhhcCcccccCCC
Confidence 1111 1257899999999988886211 1 25678999999999954 4457788888888888765543331
Q ss_pred --------CCcccccceeEEEEEeecchhhHHHHHhhcCCCeEE-cccCcCCCCCcccccccCccccccccccCCCcccc
Q 013392 208 --------GNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI-GLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMR 278 (444)
Q Consensus 208 --------~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (444)
.+..+...+|.++||+--.+....+...++.+.... ....-........+ .
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v-----~--------------- 513 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNV-----G--------------- 513 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhc-----c---------------
Confidence 133556677999999887777777666555432211 11100000000000 0
Q ss_pred ccCcccccccccee---eEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHH
Q 013392 279 STTEDFKLPAQLVQ---RYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELK 355 (444)
Q Consensus 279 ~~~~~~~~~~~~~~---~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 355 (444)
..+...+.. .-+.-..+.+.....+-|---+.......++||.++.-.--++.+++++.
T Consensus 514 -----~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e------------- 575 (698)
T KOG2340|consen 514 -----IPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE------------- 575 (698)
T ss_pred -----chhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhh-------------
Confidence 000010111 00111123344444333321112233568899999999999999999887
Q ss_pred HhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEeccc--ccCCCCCCCcEEEEccCCCCcchh---hhcccccccC
Q 013392 356 QLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA--ARGLDFPKVKCIIQYDSAGEATEY---VHRYLKHLPV 430 (444)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~--~~G~di~~~~~vi~~~~~~s~~~~---~Q~~GR~~R~ 430 (444)
++....++--.+++.-.+..+.|..|...+|+.|.-+ -+-.++..++.||+|.+|.++.-| +.+++|+.-.
T Consensus 576 ----~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~ 651 (698)
T KOG2340|consen 576 ----EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQ 651 (698)
T ss_pred ----hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhcc
Confidence 5566666666677777777788999999999999875 367899999999999999987644 6777777666
Q ss_pred CC
Q 013392 431 GN 432 (444)
Q Consensus 431 g~ 432 (444)
|+
T Consensus 652 gn 653 (698)
T KOG2340|consen 652 GN 653 (698)
T ss_pred CC
Confidence 64
No 166
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.33 E-value=1.4e-11 Score=119.72 Aligned_cols=360 Identities=18% Similarity=0.114 Sum_probs=194.6
Q ss_pred CCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
|+. +..+|.-+ .+..+..-+..+.||-|||+++.+|+.-..+. +..|.+++....|+.--++++.++.
T Consensus 78 g~~-~~dVQliG--~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---------gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 78 GMR-HFDVQLLG--GIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---------GKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred CCC-hhhHHHhh--hhhhcCCceeeeecCCchHHHHHHHHHHHhcC---------CCCcEEeeehHHhhhhCHHHHHHHH
Confidence 443 55555544 44445556999999999999999998776655 5669999999999999999999998
Q ss_pred cccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHH-HHHH-----hccCccccCCccEEEEechhHhhhcc------
Q 013392 118 HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHL-----KHTSSFLHTNLRWIIFDEADRILELG------ 185 (444)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l-----~~~~~~~~~~~~lvV~DE~h~~~~~~------ 185 (444)
..++..+ ++...+... ..++....+||.++|-.-+ ++++ .+........+++.|+||++.++-+.
T Consensus 146 ~~LGlsv-G~~~~~m~~--~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLi 222 (822)
T COG0653 146 EFLGLSV-GVILAGMSP--EEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLI 222 (822)
T ss_pred HHcCCce-eeccCCCCh--HHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeecccccee
Confidence 8777444 444434333 3334445579999997654 1122 22223344568899999999863321
Q ss_pred ----------hhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHH-----------------------
Q 013392 186 ----------FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHL----------------------- 232 (444)
Q Consensus 186 ----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~----------------------- 232 (444)
....+..+...+..... -..+...+.+.+|-.--...+.+
T Consensus 223 ISG~~~~~~~~Y~~~~~~v~~l~~~~d-------~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alr 295 (822)
T COG0653 223 ISGPAEDSSELYKKVDDLVRLLSEDED-------FTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALR 295 (822)
T ss_pred eecccccCchHHHHHHHHHHHhccccc-------eeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHH
Confidence 23444555544443210 01111222232221110000000
Q ss_pred -HHhhcCCCeEEcccCc------CCCCCcccccccCccccccccccCC---------------------------Ccc--
Q 013392 233 -AKISLETPVLIGLDEK------KLPEDKSHVRFGSLESDVKEEVEHP---------------------------STT-- 276 (444)
Q Consensus 233 -~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~-- 276 (444)
..++..+--++.-+.. .-...-...++.+.-....+..+.. ...
T Consensus 296 A~~l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~ 375 (822)
T COG0653 296 AHILFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTAD 375 (822)
T ss_pred HHHHhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcch
Confidence 0011111111110000 0000001111111100000000000 000
Q ss_pred -------------ccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcc
Q 013392 277 -------------MRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQ 343 (444)
Q Consensus 277 -------------~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~ 343 (444)
+.....+......-..-.+......|...+...+.+.. ..+.|+||-+.+++..+.+.+.|.+.
T Consensus 376 te~~EF~~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~--~~gqPvLvgT~sie~SE~ls~~L~~~- 452 (822)
T COG0653 376 TEEEEFDVIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERH--EKGQPVLVGTVSIEKSELLSKLLRKA- 452 (822)
T ss_pred hhhhhhhhccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHH--hcCCCEEEcCcceecchhHHHHHHhc-
Confidence 00111111111111111122233557777777777764 56789999999999999999999987
Q ss_pred cCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcE-----------EEEcc
Q 013392 344 WSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC-----------IIQYD 412 (444)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~-----------vi~~~ 412 (444)
+++--+++......+-+.+-+..+.| .|-|||+|+++|-||.--.. ||--.
T Consensus 453 ----------------~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTE 514 (822)
T COG0653 453 ----------------GIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTE 514 (822)
T ss_pred ----------------CCCceeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecc
Confidence 67766677766655555555554444 67899999999999842221 12111
Q ss_pred CCCCcchhhhcccccccCCCcccccceE
Q 013392 413 SAGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 413 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
...|-+---|-.||+||.|.+|.+--++
T Consensus 515 RhESRRIDnQLRGRsGRQGDpG~S~F~l 542 (822)
T COG0653 515 RHESRRIDNQLRGRAGRQGDPGSSRFYL 542 (822)
T ss_pred cchhhHHHHHhhcccccCCCcchhhhhh
Confidence 2223333348889999999999876554
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.30 E-value=4.9e-11 Score=106.12 Aligned_cols=76 Identities=26% Similarity=0.340 Sum_probs=59.5
Q ss_pred cCCCCCCHHHHhHHHh----HhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHH
Q 013392 37 LGFEAPTKVQAQAIPV----ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (444)
Q Consensus 37 ~~~~~~~~~Q~~~~~~----~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 112 (444)
|+|. ||+.|.+.+.. +.+++++++.+|||+|||++++.+++..+...... ..+.+++|.++|.++..|...+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHH
Confidence 6787 79999995544 44788999999999999999999998766542211 0234799999999999998877
Q ss_pred HHHH
Q 013392 113 LHKL 116 (444)
Q Consensus 113 l~~~ 116 (444)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7765
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.30 E-value=4.9e-11 Score=106.12 Aligned_cols=76 Identities=26% Similarity=0.340 Sum_probs=59.5
Q ss_pred cCCCCCCHHHHhHHHh----HhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHH
Q 013392 37 LGFEAPTKVQAQAIPV----ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (444)
Q Consensus 37 ~~~~~~~~~Q~~~~~~----~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 112 (444)
|+|. ||+.|.+.+.. +.+++++++.+|||+|||++++.+++..+...... ..+.+++|.++|.++..|...+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHH
Confidence 6787 79999995544 44788999999999999999999998766542211 0234799999999999998877
Q ss_pred HHHH
Q 013392 113 LHKL 116 (444)
Q Consensus 113 l~~~ 116 (444)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7765
No 169
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.23 E-value=1.5e-09 Score=102.90 Aligned_cols=122 Identities=17% Similarity=0.209 Sum_probs=95.5
Q ss_pred cCceEEEEecccchhhhhhhhhhhcccCCCCC-chHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCC---CcEEEEe
Q 013392 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQ-PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK---KALLLST 393 (444)
Q Consensus 318 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~iLi~t 393 (444)
-+.++|||..+......+.+.+.......... +.-....-..+...+.+.|..+..+|++++++|.+.. +-++++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 35799999999999999999888776544322 0000111122445567889999999999999998643 4588899
Q ss_pred cccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccce
Q 013392 394 DVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPL 439 (444)
Q Consensus 394 ~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 439 (444)
.+..-|+|+-..+-+++|+..|++..-.|.+-|+.|.||..-|+..
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvY 843 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVY 843 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEE
Confidence 9999999999999999999999999999999999999997766543
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.21 E-value=5.9e-10 Score=96.28 Aligned_cols=140 Identities=21% Similarity=0.255 Sum_probs=98.0
Q ss_pred HHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHH
Q 013392 30 CDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (444)
Q Consensus 30 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 109 (444)
.+......|+. |++.|..+.-.+..|+ +.+..||.|||+++.+++....+. |..|-+++.+..|+..-
T Consensus 67 rea~~r~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---------G~~V~vvT~NdyLA~RD 134 (266)
T PF07517_consen 67 REAARRTLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---------GKGVHVVTSNDYLAKRD 134 (266)
T ss_dssp HHHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---------SS-EEEEESSHHHHHHH
T ss_pred HHHHHHHcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---------cCCcEEEeccHHHhhcc
Confidence 34444566886 9999999998887766 999999999999998888777765 66799999999999999
Q ss_pred HHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHH-HHhc----cCc-cccCCccEEEEechhHhhh
Q 013392 110 YEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLD-HLKH----TSS-FLHTNLRWIIFDEADRILE 183 (444)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~-~l~~----~~~-~~~~~~~lvV~DE~h~~~~ 183 (444)
++++..++..++..+ .....+........ ...++|+++|...+.. ++.. ... .....++++|+||+|.++-
T Consensus 135 ~~~~~~~y~~LGlsv-~~~~~~~~~~~r~~--~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~Li 211 (266)
T PF07517_consen 135 AEEMRPFYEFLGLSV-GIITSDMSSEERRE--AYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILI 211 (266)
T ss_dssp HHHHHHHHHHTT--E-EEEETTTEHHHHHH--HHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTT
T ss_pred HHHHHHHHHHhhhcc-ccCccccCHHHHHH--HHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEE
Confidence 999999998887444 44554444333222 2335799999987753 3432 111 1246789999999998754
Q ss_pred c
Q 013392 184 L 184 (444)
Q Consensus 184 ~ 184 (444)
+
T Consensus 212 D 212 (266)
T PF07517_consen 212 D 212 (266)
T ss_dssp T
T ss_pred e
Confidence 3
No 171
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.92 E-value=2.9e-10 Score=111.19 Aligned_cols=196 Identities=18% Similarity=0.184 Sum_probs=124.4
Q ss_pred chhhhhhccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHh-cCCcEEEEcCCCCchhHHhHHHHHHHHhccC
Q 013392 7 KKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYS 85 (444)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~-~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~ 85 (444)
.+...++.+...+-....|.......+. + ...+.|.+.+..+. ...++++-+|||+|||..+.+++......
T Consensus 898 ~~~~~t~ll~l~plp~~~L~~~~~e~~~---~--~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~-- 970 (1230)
T KOG0952|consen 898 NEPPLTELLDLRPLPSSALKNVVFEALY---K--YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY-- 970 (1230)
T ss_pred cccccccccccCCCcchhhccccHHHhh---c--ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc--
Confidence 3444555555555555555544444442 2 35667777666544 45678999999999999999988877766
Q ss_pred CCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCcc
Q 013392 86 PRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF 165 (444)
Q Consensus 86 ~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~ 165 (444)
.++.++++++|.++|+..-.+...+..... +....-..+....+ ......++++|+||++.-...+++...
T Consensus 971 -----~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd---~~~v~~~~~~ittpek~dgi~Rsw~~r 1041 (1230)
T KOG0952|consen 971 -----YPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPD---VKAVREADIVITTPEKWDGISRSWQTR 1041 (1230)
T ss_pred -----CCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCC---hhheecCceEEcccccccCccccccch
Confidence 556789999999999998877766654332 23334444333333 223345689999999988777654332
Q ss_pred -ccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecch
Q 013392 166 -LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE 227 (444)
Q Consensus 166 -~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~ 227 (444)
.+.+++++|+||.|.+ ..+.+..++.+....... ........+.+++|..+.+
T Consensus 1042 ~~v~~v~~iv~de~hll-g~~rgPVle~ivsr~n~~--------s~~t~~~vr~~glsta~~n 1095 (1230)
T KOG0952|consen 1042 KYVQSVSLIVLDEIHLL-GEDRGPVLEVIVSRMNYI--------SSQTEEPVRYLGLSTALAN 1095 (1230)
T ss_pred hhhccccceeecccccc-cCCCcceEEEEeeccccC--------ccccCcchhhhhHhhhhhc
Confidence 5578999999999954 444555444433333221 1223336667776644443
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.86 E-value=3.8e-08 Score=98.60 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=42.4
Q ss_pred CCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccC
Q 013392 386 KKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPV 430 (444)
Q Consensus 386 ~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 430 (444)
..+.+++.+++.+|+|.|++=.+..+....|...-.|.+||+.|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 578999999999999999999999999999999999999999995
No 173
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.81 E-value=6.9e-08 Score=83.70 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=102.2
Q ss_pred CCHHHHhHHHhHh----------cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHH
Q 013392 42 PTKVQAQAIPVIL----------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (444)
Q Consensus 42 ~~~~Q~~~~~~~~----------~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 111 (444)
+...|.|++-... .+..+++-..||.||-.+..-.++..+.+ ...++||+..+..|..+..+
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------Gr~r~vwvS~s~dL~~Da~R 109 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------GRKRAVWVSVSNDLKYDAER 109 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------CCCceEEEECChhhhhHHHH
Confidence 8899999886655 23457888999999999888777877766 23459999999999999999
Q ss_pred HHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCc--c--------ccCC-ccEEEEechhH
Q 013392 112 ILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS--F--------LHTN-LRWIIFDEADR 180 (444)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~--~--------~~~~-~~lvV~DE~h~ 180 (444)
-++........... +. ..... ....-+..|+++||..|...-..... . ...+ =.+|||||||.
T Consensus 110 Dl~DIG~~~i~v~~--l~-~~~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 110 DLRDIGADNIPVHP--LN-KFKYG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK 183 (303)
T ss_pred HHHHhCCCccccee--ch-hhccC---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh
Confidence 99987654211111 10 00000 00112346999999998776432110 0 0012 25999999998
Q ss_pred hhhcch--------hHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchh
Q 013392 181 ILELGF--------GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK 228 (444)
Q Consensus 181 ~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~ 228 (444)
..+... +.....+.+.++ ..+++.+|||....
T Consensus 184 akn~~~~~~~~sk~g~avl~LQ~~LP----------------~ARvvY~SATgase 223 (303)
T PF13872_consen 184 AKNLSSGSKKPSKTGIAVLELQNRLP----------------NARVVYASATGASE 223 (303)
T ss_pred cCCCCccCccccHHHHHHHHHHHhCC----------------CCcEEEecccccCC
Confidence 765432 234444555565 56789999996544
No 174
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.71 E-value=5.7e-08 Score=80.60 Aligned_cols=59 Identities=25% Similarity=0.343 Sum_probs=42.7
Q ss_pred CCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHH
Q 013392 39 FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (444)
Q Consensus 39 ~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~ 104 (444)
+...+..|..+++++...+-+++.||.|+|||+.++..+++.+.. +.-.+++++-|..+
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-------g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-------GEYDKIIITRPPVE 60 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-------TS-SEEEEEE-S--
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-------CCCcEEEEEecCCC
Confidence 345788999999999988889999999999999999999998876 34556888888764
No 175
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.66 E-value=1.8e-06 Score=83.72 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=43.4
Q ss_pred CCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccC
Q 013392 385 EKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPV 430 (444)
Q Consensus 385 g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 430 (444)
...+.|.+..++-+|+|-|++=.+.-+....|..+=.|.+||+.|.
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 5588999999999999999999999999999999999999999994
No 176
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.58 E-value=8.5e-08 Score=93.81 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=94.8
Q ss_pred CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
.+.+...+...+...-.... .+++||+....-+..+.-.+... +.....+.|.++...|.+.
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~-~kiiifsq~~~~l~l~~~~l~~~-----------------~~~~~~~~g~~~~~~r~~s 581 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQ-PKIVIFSQLIWGLALVCLRLFFK-----------------GFVFLRYDGEMLMKIRTKS 581 (674)
T ss_pred hhhhhHHHHHHHhhccCCCC-CceeeehhHHHHHHHhhhhhhhc-----------------ccccchhhhhhHHHHHHhh
Confidence 34555556665553322333 59999998888887777766643 7788889999999999999
Q ss_pred HHHhhcCC-Cc-EEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccc
Q 013392 379 FGAFKTEK-KA-LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFN 436 (444)
Q Consensus 379 ~~~f~~g~-~~-iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~ 436 (444)
+..|..+. .. .+++..+...|+++..+.+|+..++-+|+..--|.+-|+.|.|+.--+
T Consensus 582 ~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 582 FTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred hcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhccccee
Confidence 99998554 33 456677889999999999999999999999999999999999986543
No 177
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.56 E-value=8.4e-07 Score=74.26 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=85.2
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhc---CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCc
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILS---GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~---~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (444)
.+|+...-++++.-.+ .. ++. +|+.|.+....+.+ +++.+.++-+|.|||.+.+..+...+.+ +..
T Consensus 3 ~~w~p~~~P~wLl~E~-e~-~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAd--------g~~ 71 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEI-ES-NIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALAD--------GSR 71 (229)
T ss_pred CCCCchhChHHHHHHH-Hc-Cce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcC--------CCc
Confidence 4677788889988888 44 676 99999999988884 5789999999999997755544444433 334
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeE--EEeCCcchhH-----H---HHHhcCCCcEEEeCchHHHHH
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPG--YVMGGENRSK-----E---KARLRKGISILVATPGRLLDH 158 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~--~~~~~~~~~~-----~---~~~~~~~~~iii~T~~~l~~~ 158 (444)
-+-+++|. +|..|..+.+...++..-..... -+.-....+. . .........|+++||+.++++
T Consensus 72 LvrviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 72 LVRVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred EEEEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 46677776 89999999988766543211111 1111111111 1 111223456999999987664
No 178
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.49 E-value=2.2e-06 Score=83.38 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=77.4
Q ss_pred ccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEeccc
Q 013392 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA 396 (444)
Q Consensus 317 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~ 396 (444)
.-.+-+++|.+-....-.+...+..+....+ ...+.++..|+.....+..++.+....|..+++++|.+.
T Consensus 641 ~i~gailvflpgwa~i~~L~~~ll~~~~fg~----------~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stnia 710 (1282)
T KOG0921|consen 641 NIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQ----------ANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIA 710 (1282)
T ss_pred CCccceeeecCchHHhhhhhhhhhhhhhhcc----------chhcccccchhhcccHhhhhccCccccccccccccccee
Confidence 4456788998888887777776655432211 124456777887877777778877778999999999999
Q ss_pred ccCCCCCCCcEEEEccCC------------------CCcchhhhcccccccCCCcccccc
Q 013392 397 ARGLDFPKVKCIIQYDSA------------------GEATEYVHRYLKHLPVGNFYFNIP 438 (444)
Q Consensus 397 ~~G~di~~~~~vi~~~~~------------------~s~~~~~Q~~GR~~R~g~~g~~~~ 438 (444)
+..+.+-++..|++.... .+.....||.||+||. ++|.|.-
T Consensus 711 etsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~ 769 (1282)
T KOG0921|consen 711 ETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFH 769 (1282)
T ss_pred eEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-ccccccc
Confidence 888888776666643311 2345669999999994 5565543
No 179
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.49 E-value=4e-07 Score=91.23 Aligned_cols=71 Identities=17% Similarity=0.018 Sum_probs=55.7
Q ss_pred hcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEE
Q 013392 141 LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLL 220 (444)
Q Consensus 141 ~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~ 220 (444)
++.+..|+++||+.+..-+.. +.+..+.+..|||||||++........+..++..-.. ..-+.+
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~---------------~gfIka 67 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNK---------------TGFIKA 67 (814)
T ss_pred HhhcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCC---------------CcceEE
Confidence 444557999999999876655 6778889999999999998777666677777766554 557889
Q ss_pred EEeecch
Q 013392 221 LSATLNE 227 (444)
Q Consensus 221 ~Sat~~~ 227 (444)
||+.|..
T Consensus 68 fSdsP~~ 74 (814)
T TIGR00596 68 FSDNPEA 74 (814)
T ss_pred ecCCCcc
Confidence 9999864
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.44 E-value=1.6e-06 Score=72.79 Aligned_cols=63 Identities=25% Similarity=0.380 Sum_probs=44.4
Q ss_pred CCCHHHHhHHHhHhcCC--cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVILSGR--HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~--~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 112 (444)
+|++-|++++..++.+. -.++.|+.|+|||.+ +..+...+.. .+.++++++||...+....+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA--------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH--------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh--------CCCeEEEECCcHHHHHHHHHh
Confidence 37889999999997543 468889999999975 3334444444 356799999998888775554
No 181
>PRK10536 hypothetical protein; Provisional
Probab=98.36 E-value=9.2e-06 Score=69.50 Aligned_cols=46 Identities=24% Similarity=0.213 Sum_probs=39.2
Q ss_pred CCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhc
Q 013392 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQS 83 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~ 83 (444)
++...+..|..++.++.++.-+++.|++|+|||+.++..+++.+..
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~ 101 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH 101 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5666788999999999888889999999999999988888876644
No 182
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.30 E-value=4.9e-06 Score=76.95 Aligned_cols=96 Identities=26% Similarity=0.248 Sum_probs=63.0
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (444)
-++|.|.+|||||++++..+...... ..+.++++++++..|.....+.+......
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~-------~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------------------ 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNS-------EEGKKVLYLCGNHPLRNKLREQLAKKYNP------------------ 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhcc-------ccCCceEEEEecchHHHHHHHHHhhhccc------------------
Confidence 36899999999999887766655111 34666999999999999888877764300
Q ss_pred HHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhc
Q 013392 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184 (444)
Q Consensus 138 ~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~ 184 (444)
......+..+..+...+.. .......+++|||||+|++...
T Consensus 58 -----~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~ 98 (352)
T PF09848_consen 58 -----KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTK 98 (352)
T ss_pred -----chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhc
Confidence 0001233444444433321 2223458899999999999873
No 183
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.25 E-value=4.3e-06 Score=78.90 Aligned_cols=75 Identities=23% Similarity=0.217 Sum_probs=65.0
Q ss_pred HHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHH
Q 013392 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (444)
Q Consensus 35 ~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~ 114 (444)
..+++..|+.-|..|+.+.+++.-.+|+||+|+|||.+....+++.... ....+|+++|+..-+.|.++.+.
T Consensus 404 s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--------~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--------HAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred cCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--------cCCceEEEcccchhHHHHHHHHH
Confidence 4457888999999999999999999999999999999888877777766 34559999999999999999987
Q ss_pred HHh
Q 013392 115 KLL 117 (444)
Q Consensus 115 ~~~ 117 (444)
+..
T Consensus 476 ~tg 478 (935)
T KOG1802|consen 476 KTG 478 (935)
T ss_pred hcC
Confidence 753
No 184
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.25 E-value=1.6e-06 Score=70.81 Aligned_cols=99 Identities=18% Similarity=0.222 Sum_probs=67.9
Q ss_pred cCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEec--c
Q 013392 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD--V 395 (444)
Q Consensus 318 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~--~ 395 (444)
.++.++||+++.+..+.+.+.+..... .....++.. +..+...+++.|++++..||+++. .
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~---------------~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~ 70 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLE---------------EKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGS 70 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E----------------ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcc---------------cccceeeec--CcchHHHHHHHHHhccCeEEEEEeccc
Confidence 458999999999999999999876521 011122222 356788899999999999999998 9
Q ss_pred cccCCCCCC--CcEEEEccCCCC-c-----------------------------chhhhcccccccCCCc
Q 013392 396 AARGLDFPK--VKCIIQYDSAGE-A-----------------------------TEYVHRYLKHLPVGNF 433 (444)
Q Consensus 396 ~~~G~di~~--~~~vi~~~~~~s-~-----------------------------~~~~Q~~GR~~R~g~~ 433 (444)
+.+|+|+|+ ++.||..+.|.. + ....|.+||+.|..++
T Consensus 71 ~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D 140 (167)
T PF13307_consen 71 FSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDD 140 (167)
T ss_dssp CGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-
T ss_pred EEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCC
Confidence 999999995 888999887742 1 1237889999997654
No 185
>PF13245 AAA_19: Part of AAA domain
Probab=98.22 E-value=8.2e-06 Score=56.33 Aligned_cols=60 Identities=33% Similarity=0.407 Sum_probs=42.7
Q ss_pred HHHhHhc-CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHH
Q 013392 49 AIPVILS-GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (444)
Q Consensus 49 ~~~~~~~-~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l 113 (444)
++...+. +.-++|.+|+|+|||.+++..+...+.... ..+.++++++|++..+++..+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~-----~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA-----DPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc-----CCCCeEEEECCCHHHHHHHHHHH
Confidence 4443333 344566999999999887776666663211 12566999999999999988887
No 186
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.18 E-value=8.9e-06 Score=79.44 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=58.6
Q ss_pred HHHHHcCCCCCCHHHHhHHHhHh----cCCcEEEEcCCCCchhHHhHHHHHHHHhccCC----------C-----C----
Q 013392 32 QLRERLGFEAPTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSP----------R-----I---- 88 (444)
Q Consensus 32 ~l~~~~~~~~~~~~Q~~~~~~~~----~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~----------~-----~---- 88 (444)
.++=.|.|. |++.|...+..++ ...++++..|||+|||++.+-..+.-...+.. + .
T Consensus 13 Gv~V~fP~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~ 91 (945)
T KOG1132|consen 13 GVPVEFPFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSD 91 (945)
T ss_pred CceeeccCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCcc
Confidence 444456786 9999988877766 56789999999999999766555433222110 0 0
Q ss_pred ----------C----CCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 89 ----------D----RSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 89 ----------~----~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
. +...+++.+-.-|-+-..|..+++++...
T Consensus 92 ~~g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y 135 (945)
T KOG1132|consen 92 SGGEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGY 135 (945)
T ss_pred CCCCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCC
Confidence 0 01245677777777788999999988753
No 187
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.16 E-value=1.3e-05 Score=75.25 Aligned_cols=65 Identities=20% Similarity=0.293 Sum_probs=54.8
Q ss_pred CCCHHHHhHHHhHhcCCc-EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVILSGRH-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~-~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~ 114 (444)
.+..-|..|+....+.++ .++.||+|+|||.+....+.+.+.. +.++|+.+||..-+....+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---------CCeEEEEcCchHHHHHHHHHhc
Confidence 388899999999887754 6889999999999888877777755 6779999999999999888654
No 188
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.15 E-value=8.4e-06 Score=71.12 Aligned_cols=73 Identities=29% Similarity=0.363 Sum_probs=51.7
Q ss_pred CCHHHHhHHHhHhcCCc-EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 42 PTKVQAQAIPVILSGRH-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~-~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
+++.|.+|+..+++... .+|.||+|+|||.+....+...+.... ......+.++|+++|+..-+.+..+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~-~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFK-SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH--------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchh-hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 78999999999998888 999999999999765554444421000 00114567799999999999999999888
No 189
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.13 E-value=5.8e-05 Score=74.04 Aligned_cols=86 Identities=23% Similarity=0.213 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcCCC-CCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHH
Q 013392 27 STLCDQLRERLGFE-APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (444)
Q Consensus 27 ~~i~~~l~~~~~~~-~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L 105 (444)
..+.+.+...|+.. ...++|++|+...+.++-.+|.|++|+|||.+....+........ ....++++.+||-.-
T Consensus 137 ~~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~-----~~~~~i~l~APTgkA 211 (615)
T PRK10875 137 ALLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLAD-----GERCRIRLAAPTGKA 211 (615)
T ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcC-----CCCcEEEEECCcHHH
Confidence 34555564444443 135899999999999889999999999999875443332222100 123568899999888
Q ss_pred HHHHHHHHHHHh
Q 013392 106 CLQVYEILHKLL 117 (444)
Q Consensus 106 ~~q~~~~l~~~~ 117 (444)
+..+.+.+....
T Consensus 212 A~rL~e~~~~~~ 223 (615)
T PRK10875 212 AARLTESLGKAL 223 (615)
T ss_pred HHHHHHHHHhhh
Confidence 887777665543
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.10 E-value=6.2e-05 Score=73.70 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=76.9
Q ss_pred CHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCc
Q 013392 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHW 122 (444)
Q Consensus 43 ~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~ 122 (444)
.++|++|+...+.++-++|.|++|+|||.+....+......... ....++++.+||-.-+..+.+.+......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~----~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~ 222 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPK----QGKLRIALAAPTGKAAARLAESLRKAVKNLAA 222 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccc----cCCCcEEEECCcHHHHHHHHHHHHhhhccccc
Confidence 47999999999999999999999999998654433222221110 01246999999988777777666554322110
Q ss_pred eeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCcc-----ccCCccEEEEechhHhhhcchhHHHHHHHHHh
Q 013392 123 IVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF-----LHTNLRWIIFDEADRILELGFGKEIEEILDIL 197 (444)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~-----~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l 197 (444)
. .... ....+-..|..+++........+ ....+++||+||+- |.+ ...+..++..+
T Consensus 223 ----------~-~~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS-Mvd---~~l~~~ll~al 283 (586)
T TIGR01447 223 ----------A-EALI----AALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS-MVD---LPLMAKLLKAL 283 (586)
T ss_pred ----------c-hhhh----hccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc-cCC---HHHHHHHHHhc
Confidence 0 0000 00011233434443321110111 12357899999998 443 34566677777
Q ss_pred cC
Q 013392 198 GS 199 (444)
Q Consensus 198 ~~ 199 (444)
+.
T Consensus 284 ~~ 285 (586)
T TIGR01447 284 PP 285 (586)
T ss_pred CC
Confidence 65
No 191
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.07 E-value=8.6e-05 Score=74.89 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=49.9
Q ss_pred HHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHH
Q 013392 33 LRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (444)
Q Consensus 33 l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 109 (444)
+.+..++. +++.|++|+..+..++-+++.|++|+|||.+. ..++..+... ++...+++++||-.-+..+
T Consensus 316 ~~~~~~~~-l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~------~~~~~v~l~ApTg~AA~~L 384 (720)
T TIGR01448 316 VEKKLRKG-LSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL------GGLLPVGLAAPTGRAAKRL 384 (720)
T ss_pred HHHhcCCC-CCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc------CCCceEEEEeCchHHHHHH
Confidence 44555775 99999999999998888999999999999754 3344444331 1114588899997666543
No 192
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.78 E-value=0.00029 Score=62.49 Aligned_cols=66 Identities=24% Similarity=0.252 Sum_probs=48.8
Q ss_pred HHcCCCCCCHHHHhHHHhHhcC--CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHH
Q 013392 35 ERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (444)
Q Consensus 35 ~~~~~~~~~~~Q~~~~~~~~~~--~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~ 106 (444)
+.+|+...+..|.-|++.++.. +=+.+.|+.|+|||+.|+.+.+++....+. -.++++-=|+..+-
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~------y~KiiVtRp~vpvG 289 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR------YRKIIVTRPTVPVG 289 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh------hceEEEecCCcCcc
Confidence 5568986667888899998855 347888999999999999999988876432 23366655665443
No 193
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.75 E-value=0.00028 Score=55.13 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
+++.+++.|++|+|||..+-..+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34568999999999998766555443
No 194
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.75 E-value=0.00021 Score=70.88 Aligned_cols=125 Identities=21% Similarity=0.141 Sum_probs=81.5
Q ss_pred CCCCCHHHHhHHHhHhcC-CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 39 FEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 39 ~~~~~~~Q~~~~~~~~~~-~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
+..++..|++|+...+.- ...+|.|-+|+|||.+....+...+.. +++||+.+=|-.-+....-.++.+.
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~---------gkkVLLtsyThsAVDNILiKL~~~~ 737 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL---------GKKVLLTSYTHSAVDNILIKLKGFG 737 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc---------CCeEEEEehhhHHHHHHHHHHhccC
Confidence 335899999999888855 457899999999998766655444433 7779999999888888877777653
Q ss_pred cccCceeeEEEeCCcc-----------------hhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhH
Q 013392 118 HRFHWIVPGYVMGGEN-----------------RSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR 180 (444)
Q Consensus 118 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~ 180 (444)
-. ...+..+.. .-.....+..+..|+.||=-.+.+ ..|..+.++++|+|||-.
T Consensus 738 i~-----~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~-----plf~~R~FD~cIiDEASQ 807 (1100)
T KOG1805|consen 738 IY-----ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH-----PLFVNRQFDYCIIDEASQ 807 (1100)
T ss_pred cc-----eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc-----hhhhccccCEEEEccccc
Confidence 21 111111111 112223444566788887433333 223335689999999987
Q ss_pred hh
Q 013392 181 IL 182 (444)
Q Consensus 181 ~~ 182 (444)
+.
T Consensus 808 I~ 809 (1100)
T KOG1805|consen 808 IL 809 (1100)
T ss_pred cc
Confidence 53
No 195
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.72 E-value=0.00013 Score=66.77 Aligned_cols=124 Identities=23% Similarity=0.221 Sum_probs=78.0
Q ss_pred CCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccC
Q 013392 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~ 121 (444)
|++-|.+++.. ...+++|.|+.|||||.+.+.-+...+.... ....++|++++|+..+.++.+++...+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~ 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEEEQ 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCccc
Confidence 57789999988 7778999999999999988777776665532 2345699999999999999999998765422
Q ss_pred ceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCcc-ccCCccEEEEechh
Q 013392 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF-LHTNLRWIIFDEAD 179 (444)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~-~~~~~~lvV~DE~h 179 (444)
... ...............+.|+|.+.+...+.+.... ..-.-++-+.|+..
T Consensus 74 ~~~-------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 QES-------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HCC-------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ccc-------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 100 0000111222223468899988876644321111 11123466777776
No 196
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.68 E-value=0.00058 Score=70.48 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=45.8
Q ss_pred CCCCCCHHHHhHHHhHhcCCc-EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHH
Q 013392 38 GFEAPTKVQAQAIPVILSGRH-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~-~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q 108 (444)
|+. |++-|++|+..++++++ +++.|+.|+|||.+ +.++...+.. .+.+|+.++||-..+..
T Consensus 344 g~~-Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--------~G~~V~~~ApTGkAA~~ 405 (988)
T PRK13889 344 GLV-LSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--------AGYEVRGAALSGIAAEN 405 (988)
T ss_pred CCC-CCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEecCcHHHHHH
Confidence 665 99999999999997654 68999999999975 4444444433 35679999999655443
No 197
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.65 E-value=0.00019 Score=71.26 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=54.8
Q ss_pred CCCHHHHhHHHhHhcC-CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~-~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
.+++.|.+|+..++.. ..++|.||+|+|||.+....+.+.+.. +.++|+++||..-+.+..+.+.+
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 4799999999998876 678999999999998776655555433 44799999999999999998877
No 198
>PRK08181 transposase; Validated
Probab=97.59 E-value=0.0012 Score=58.09 Aligned_cols=58 Identities=24% Similarity=0.274 Sum_probs=35.4
Q ss_pred CCHHHHhHHH----hHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHH
Q 013392 42 PTKVQAQAIP----VILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (444)
Q Consensus 42 ~~~~Q~~~~~----~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 109 (444)
+...|..++. ++..++++++.||+|+|||..+...+.+.... +..|+++ +...|..+.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~---------g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN---------GWRVLFT-RTTDLVQKL 149 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc---------CCceeee-eHHHHHHHH
Confidence 3456665553 33467899999999999998666544433322 3446554 334455543
No 199
>PRK06526 transposase; Provisional
Probab=97.57 E-value=0.00041 Score=60.57 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=23.3
Q ss_pred HhHhcCCcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 51 PVILSGRHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 51 ~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
+++..++++++.||+|+|||..+.....+..
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 3444678999999999999987766554444
No 200
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.57 E-value=0.0016 Score=66.17 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=45.2
Q ss_pred CCCCCCHHHHhHHHhHhcC-CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHH
Q 013392 38 GFEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~-~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 109 (444)
++. +++-|++|+..++.+ +-++|.|++|+|||.+ +-++...+.. .+.++++++||-..+..+
T Consensus 350 ~~~-Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~--------~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 350 HYR-LSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA--------AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred cCC-CCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh--------CCCeEEEEeCcHHHHHHH
Confidence 554 999999999998874 5679999999999965 3334433332 356699999996555544
No 201
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.0012 Score=60.49 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
+..+++.||||+|||.++...+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999988776665544
No 202
>PHA02533 17 large terminase protein; Provisional
Probab=97.54 E-value=0.0013 Score=63.82 Aligned_cols=139 Identities=15% Similarity=0.142 Sum_probs=83.3
Q ss_pred CCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
+|. |+|+|.+.+..+..++-.++..+=..|||..+...++..... ..+..+++++|+...+....+.++...
T Consensus 57 Pf~-L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-------~~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 57 KVQ-MRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-------NKDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred ecC-CcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 354 899999999887666777888889999999877655554443 234579999999999998888887765
Q ss_pred cccCcee-eEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHH
Q 013392 118 HRFHWIV-PGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196 (444)
Q Consensus 118 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~ 196 (444)
...+... ...... ......+.+++.|.+.|.+. .........++++||+|.+.+ ....+..+...
T Consensus 129 e~~P~l~~~~i~~~----~~~~I~l~NGS~I~~lss~~--------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~ 194 (534)
T PHA02533 129 ELLPDFLQPGIVEW----NKGSIELENGSKIGAYASSP--------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPV 194 (534)
T ss_pred HhCHHHhhcceeec----CccEEEeCCCCEEEEEeCCC--------CccCCCCCceEEEeccccCCC--HHHHHHHHHHH
Confidence 5433211 011000 01111123455555544221 111223567899999995433 22333444444
Q ss_pred hc
Q 013392 197 LG 198 (444)
Q Consensus 197 l~ 198 (444)
+.
T Consensus 195 la 196 (534)
T PHA02533 195 IS 196 (534)
T ss_pred HH
Confidence 43
No 203
>PRK04296 thymidine kinase; Provisional
Probab=97.52 E-value=0.00032 Score=58.59 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=24.2
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEec
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 101 (444)
-.++.||+|+|||..++-.+..... .+.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~---------~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEE---------RGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH---------cCCeEEEEec
Confidence 4688999999999766655444332 2556888766
No 204
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.50 E-value=0.0012 Score=61.24 Aligned_cols=74 Identities=22% Similarity=0.209 Sum_probs=45.7
Q ss_pred cCCCCCCHHHHhHHHhHh----cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHH
Q 013392 37 LGFEAPTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (444)
Q Consensus 37 ~~~~~~~~~Q~~~~~~~~----~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 112 (444)
|.+...+|-|.+-+..+. .+.+.++.+|+|+|||.+.+..+..+-..++. .-.+.++-.-|..=......+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~-----~~~KliYCSRTvpEieK~l~E 86 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD-----EHRKLIYCSRTVPEIEKALEE 86 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc-----ccceEEEecCcchHHHHHHHH
Confidence 466677888876554443 55679999999999998877766666555432 233455554443333333344
Q ss_pred HHH
Q 013392 113 LHK 115 (444)
Q Consensus 113 l~~ 115 (444)
++.
T Consensus 87 l~~ 89 (755)
T KOG1131|consen 87 LKR 89 (755)
T ss_pred HHH
Confidence 433
No 205
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.48 E-value=0.0026 Score=66.24 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHcCCCCCCHHHHhHHHhHhc-CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccH
Q 013392 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILS-GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (444)
Q Consensus 25 l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~-~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~ 103 (444)
+++......... ++. |++-|.+|+..+.. ++-++|.|+.|+|||.+ +-++...+.. .+.+++.++||-
T Consensus 367 v~~~~l~a~~~~-~~~-Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~--------~G~~V~g~ApTg 435 (1102)
T PRK13826 367 VREAVLAATFAR-HAR-LSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA--------AGYRVVGGALAG 435 (1102)
T ss_pred CCHHHHHHHHhc-CCC-CCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEEcCcH
Confidence 444444444233 565 99999999998864 45579999999999964 3334444433 356799999995
Q ss_pred HHHHHH
Q 013392 104 ELCLQV 109 (444)
Q Consensus 104 ~L~~q~ 109 (444)
.-+...
T Consensus 436 kAA~~L 441 (1102)
T PRK13826 436 KAAEGL 441 (1102)
T ss_pred HHHHHH
Confidence 555443
No 206
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.48 E-value=0.00019 Score=67.47 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=61.2
Q ss_pred EEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCc----chhH
Q 013392 61 VNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGE----NRSK 136 (444)
Q Consensus 61 l~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~----~~~~ 136 (444)
..++||+|||++....+++.... +. +..|+.|....++......+..-...--.........+. ..-.
T Consensus 2 f~matgsgkt~~ma~lil~~y~k-------gy-r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK-------GY-RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN 73 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh-------ch-hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec
Confidence 46899999999877777776654 22 236666766566555444332211000000000000000 0000
Q ss_pred HHHHhcCCCcEEEeCchHHHHHHhccCc--c---ccCCcc-EEEEechhHhhhc
Q 013392 137 EKARLRKGISILVATPGRLLDHLKHTSS--F---LHTNLR-WIIFDEADRILEL 184 (444)
Q Consensus 137 ~~~~~~~~~~iii~T~~~l~~~l~~~~~--~---~~~~~~-lvV~DE~h~~~~~ 184 (444)
.......+..|.++|.+.|...+...+. . .+.+.. +.+-||+|++-..
T Consensus 74 ~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~ 127 (812)
T COG3421 74 NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTE 127 (812)
T ss_pred ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhh
Confidence 1111334567999999999987765332 2 233334 4567999998554
No 207
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.0017 Score=60.20 Aligned_cols=124 Identities=13% Similarity=0.067 Sum_probs=63.8
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (444)
+.+++.||||+|||.++...+........ ..+.+|.+++-...-.. ...+++.+....+...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~-----~~g~~V~lit~Dt~R~a-a~eQL~~~a~~lgvpv------------ 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSD-----DKSLNIKIITIDNYRIG-AKKQIQTYGDIMGIPV------------ 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc-----cCCCeEEEEeccCccHH-HHHHHHHHhhcCCcce------------
Confidence 45789999999999987765544332210 12344555553221111 1222555544333211
Q ss_pred HHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcc-hhHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 013392 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG-FGKEIEEILDILGSRNIGSIGEGNEVSNVK 215 (444)
Q Consensus 137 ~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 215 (444)
..+-+++.+...+.. ..+.++|++|++.+..... ....+..++...... .
T Consensus 237 ----------~~~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~--------------~ 287 (388)
T PRK12723 237 ----------KAIESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRD--------------A 287 (388)
T ss_pred ----------EeeCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCC--------------C
Confidence 122244555554443 2478899999999764321 112333333333210 2
Q ss_pred eeEEEEEeecch
Q 013392 216 RQNLLLSATLNE 227 (444)
Q Consensus 216 ~~~i~~Sat~~~ 227 (444)
..++.+|||...
T Consensus 288 e~~LVlsat~~~ 299 (388)
T PRK12723 288 EFHLAVSSTTKT 299 (388)
T ss_pred eEEEEEcCCCCH
Confidence 456777888754
No 208
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.34 E-value=0.0015 Score=56.77 Aligned_cols=37 Identities=30% Similarity=0.229 Sum_probs=25.3
Q ss_pred HHHhHHHhHh---cC---CcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 45 VQAQAIPVIL---SG---RHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 45 ~Q~~~~~~~~---~~---~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
.|...+..+. .+ -+.++.||+|+|||.++++.+.+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 4555555444 22 3579999999999988877665543
No 209
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.28 E-value=0.001 Score=68.06 Aligned_cols=158 Identities=20% Similarity=0.208 Sum_probs=94.5
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCC---------CCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceee
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSP---------RIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVP 125 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~---------~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~ 125 (444)
.|+++++....|.|||...+...+...-...+ ....-..+..|||+|. ++..||..++.++.... ++
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~--lK- 448 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL--LK- 448 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc--ce-
Confidence 35678999999999998766555443211000 0001123458999999 99999999999987643 12
Q ss_pred EEEeCCcchhHHH-HHhcCCCcEEEeCchHHHHHHhccC-------------cc------ccCCccEEEEechhHhhhcc
Q 013392 126 GYVMGGENRSKEK-ARLRKGISILVATPGRLLDHLKHTS-------------SF------LHTNLRWIIFDEADRILELG 185 (444)
Q Consensus 126 ~~~~~~~~~~~~~-~~~~~~~~iii~T~~~l~~~l~~~~-------------~~------~~~~~~lvV~DE~h~~~~~~ 185 (444)
..++-|....... ..-.-++||+++||+.|..-+.... .. ..-.|--|++||++.+-.
T Consensus 449 v~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves-- 526 (1394)
T KOG0298|consen 449 VLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES-- 526 (1394)
T ss_pred EEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--
Confidence 3333332222111 1223458999999999987654321 11 112356899999995433
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHH
Q 013392 186 FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK 234 (444)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~ 234 (444)
.......+..+++.. ..=.+|+||-..+..+..
T Consensus 527 ssS~~a~M~~rL~~i----------------n~W~VTGTPiq~Iddl~~ 559 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLHAI----------------NRWCVTGTPIQKIDDLFP 559 (1394)
T ss_pred hHHHHHHHHHHhhhh----------------ceeeecCCchhhhhhhHH
Confidence 555666777777642 345778886544444333
No 210
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.28 E-value=0.0057 Score=51.21 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=64.4
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (444)
++++||||+|||.+....+.+.... +.++.+++-...-+ ...++++.+...++... ..........
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~---------~~~v~lis~D~~R~-ga~eQL~~~a~~l~vp~-~~~~~~~~~~--- 69 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK---------GKKVALISADTYRI-GAVEQLKTYAEILGVPF-YVARTESDPA--- 69 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---------T--EEEEEESTSST-HHHHHHHHHHHHHTEEE-EESSTTSCHH---
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc---------cccceeecCCCCCc-cHHHHHHHHHHHhcccc-chhhcchhhH---
Confidence 6899999999999877766655433 44466665322211 12334444444333111 1111000010
Q ss_pred HHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhc-chhHHHHHHHHHhcCCCCCCCCCCCccccccee
Q 013392 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQ 217 (444)
Q Consensus 139 ~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 217 (444)
+.+...++. ...+++++|++|-+.+.... .....+..+...... ...
T Consensus 70 --------------~~~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~---------------~~~ 117 (196)
T PF00448_consen 70 --------------EIAREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNP---------------DEV 117 (196)
T ss_dssp --------------HHHHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSS---------------SEE
T ss_pred --------------HHHHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCC---------------ccc
Confidence 112222221 11236889999998754332 234566666666643 556
Q ss_pred EEEEEeecchhhHH
Q 013392 218 NLLLSATLNEKVNH 231 (444)
Q Consensus 218 ~i~~Sat~~~~~~~ 231 (444)
.+.++||.......
T Consensus 118 ~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 118 HLVLSATMGQEDLE 131 (196)
T ss_dssp EEEEEGGGGGHHHH
T ss_pred eEEEecccChHHHH
Confidence 67778887664433
No 211
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.27 E-value=0.0009 Score=52.57 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHhhcCC-CcEEEEecccccCCCCCC--CcEEEEccCCCC------------------------------
Q 013392 370 MKQEDRRTTFGAFKTEK-KALLLSTDVAARGLDFPK--VKCIIQYDSAGE------------------------------ 416 (444)
Q Consensus 370 ~~~~~r~~~~~~f~~g~-~~iLi~t~~~~~G~di~~--~~~vi~~~~~~s------------------------------ 416 (444)
.+..+...+++.|++.. ..||+++..+++|+|+|+ ++.||..+.|..
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPD 110 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHH
Confidence 44445788999998654 379999988999999995 678888776531
Q ss_pred -cchhhhcccccccCCCc
Q 013392 417 -ATEYVHRYLKHLPVGNF 433 (444)
Q Consensus 417 -~~~~~Q~~GR~~R~g~~ 433 (444)
.....|.+||+-|..++
T Consensus 111 a~~~l~Qa~GR~iR~~~D 128 (141)
T smart00492 111 AMRTLAQCVGRLIRGAND 128 (141)
T ss_pred HHHHHHHHhCccccCcCc
Confidence 12347899999997653
No 212
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.26 E-value=0.0057 Score=48.56 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
++.+++.||+|+|||..+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~ 38 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA 38 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 57799999999999965444
No 213
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.25 E-value=0.001 Score=61.84 Aligned_cols=57 Identities=28% Similarity=0.370 Sum_probs=41.1
Q ss_pred CCHHHHhHHHhH------hcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHH
Q 013392 42 PTKVQAQAIPVI------LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (444)
Q Consensus 42 ~~~~Q~~~~~~~------~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~ 107 (444)
|++-|+++++.+ .++..+++.|+-|+|||+..- .+...+ . ..+..+++++||-.-+.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~-~-------~~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYL-R-------SRGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHh-c-------cccceEEEecchHHHHH
Confidence 778899998888 577889999999999997432 233333 2 23556899999854444
No 214
>PRK06921 hypothetical protein; Provisional
Probab=97.24 E-value=0.013 Score=51.70 Aligned_cols=44 Identities=23% Similarity=0.155 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q 108 (444)
+.++++.|++|+|||..+... ...+.. ..+..|+++.. .++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~ai-a~~l~~-------~~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAA-ANELMR-------KKGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHH-HHHHhh-------hcCceEEEEEH-HHHHHH
Confidence 567999999999999865543 333332 11444666553 344443
No 215
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.23 E-value=0.00077 Score=53.07 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcCCC---cEEEEecc--cccCCCCCC--CcEEEEccCCCC------------------------------
Q 013392 374 DRRTTFGAFKTEKK---ALLLSTDV--AARGLDFPK--VKCIIQYDSAGE------------------------------ 416 (444)
Q Consensus 374 ~r~~~~~~f~~g~~---~iLi~t~~--~~~G~di~~--~~~vi~~~~~~s------------------------------ 416 (444)
+...+++.|++..- .||+++.. +++|+|+|+ ++.||..+.|..
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44788888986543 69999877 999999996 788988886631
Q ss_pred -cchhhhcccccccCCCc
Q 013392 417 -ATEYVHRYLKHLPVGNF 433 (444)
Q Consensus 417 -~~~~~Q~~GR~~R~g~~ 433 (444)
.....|.+||+.|..++
T Consensus 112 a~~~~~Qa~GR~iR~~~D 129 (142)
T smart00491 112 AMRALAQAIGRAIRHKND 129 (142)
T ss_pred HHHHHHHHhCccccCccc
Confidence 12348999999997654
No 216
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.22 E-value=0.0053 Score=56.10 Aligned_cols=90 Identities=18% Similarity=0.177 Sum_probs=55.7
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE-EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcch
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA-LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v-lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (444)
++-+.+.||||.|||.+..-.+...... ....+| ||-+.+-=+. ..++++.++.-++...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-------~~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~---------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-------KKKKKVAIITTDTYRIG--AVEQLKTYADIMGVPL---------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-------ccCcceEEEEeccchhh--HHHHHHHHHHHhCCce----------
Confidence 5678999999999998877666665523 123334 4444442222 2455666654433221
Q ss_pred hHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHh
Q 013392 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI 181 (444)
Q Consensus 135 ~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~ 181 (444)
.++-+|.-|...+.. +.++++|.+|=+-+-
T Consensus 264 ------------~vv~~~~el~~ai~~-----l~~~d~ILVDTaGrs 293 (407)
T COG1419 264 ------------EVVYSPKELAEAIEA-----LRDCDVILVDTAGRS 293 (407)
T ss_pred ------------EEecCHHHHHHHHHH-----hhcCCEEEEeCCCCC
Confidence 456667777665554 456789999987653
No 217
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.0017 Score=58.62 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCchhHHhHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~ 77 (444)
.++|++||+|+|||..+-+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHH
Confidence 468999999999997665533
No 218
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.20 E-value=0.00034 Score=67.90 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=92.9
Q ss_pred CCCHHHHhHHHhHhc--------CC--cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHH
Q 013392 41 APTKVQAQAIPVILS--------GR--HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~--------~~--~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 110 (444)
.+...|.+++-..++ |. .++|-...|.||-.+..-.++...+. ..+++||+.-+..|..+..
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk--------GRKrAlW~SVSsDLKfDAE 335 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK--------GRKRALWFSVSSDLKFDAE 335 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc--------ccceeEEEEeccccccchh
Confidence 478899998876653 22 35666677777765544334444434 3566999999999999988
Q ss_pred HHHHHHhcccCceeeEEEeCCcchhHH--HHHhcCCCcEEEeCchHHHHHHhccC-c----------cccCC-ccEEEEe
Q 013392 111 EILHKLLHRFHWIVPGYVMGGENRSKE--KARLRKGISILVATPGRLLDHLKHTS-S----------FLHTN-LRWIIFD 176 (444)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iii~T~~~l~~~l~~~~-~----------~~~~~-~~lvV~D 176 (444)
+.++..... + +....+. .-++... ...-.-+-.++++||..|..-..... . ...++ =++||||
T Consensus 336 RDL~DigA~-~-I~V~aln-K~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfD 412 (1300)
T KOG1513|consen 336 RDLRDIGAT-G-IAVHALN-KFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFD 412 (1300)
T ss_pred hchhhcCCC-C-ccceehh-hcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEeh
Confidence 888876432 1 1111110 0000000 00000112599999988754322101 0 01112 2699999
Q ss_pred chhHhhhc---------chhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecc
Q 013392 177 EADRILEL---------GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (444)
Q Consensus 177 E~h~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~ 226 (444)
|||...+. ..+..+..+-+.++ ..+++.-|||-.
T Consensus 413 ECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP----------------~ARVVYASATGA 455 (1300)
T KOG1513|consen 413 ECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP----------------NARVVYASATGA 455 (1300)
T ss_pred hhhhhcccccccCCCcCcccHhHHHHHHhCC----------------CceEEEeeccCC
Confidence 99986442 25667777777777 667888898863
No 219
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.19 E-value=0.0019 Score=65.05 Aligned_cols=71 Identities=20% Similarity=0.154 Sum_probs=56.7
Q ss_pred CCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
.|++-|++++.. ...+++|.|++|||||.+.+.-+.+.+.... ..+.++|+++.|+..+.++.+++.+.++
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 388999999976 4567899999999999987777777664311 2345699999999999999999988654
No 220
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0093 Score=54.72 Aligned_cols=128 Identities=15% Similarity=0.206 Sum_probs=65.6
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEec-c-H-HHHHHHHHHHHHHhcccCceeeEEEeCCcc
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP-T-R-ELCLQVYEILHKLLHRFHWIVPGYVMGGEN 133 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P-~-~-~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (444)
+.+.+.||||+|||.++...+.... . .+.++.++.- + + ..+.|+. .+....+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~--------~GkkVglI~aDt~RiaAvEQLk----~yae~lg------------ 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-G--------KKKTVGFITTDHSRIGTVQQLQ----DYVKTIG------------ 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-H--------cCCcEEEEecCCcchHHHHHHH----HHhhhcC------------
Confidence 4578999999999987766655433 2 2344555543 2 1 2333433 3322211
Q ss_pred hhHHHHHhcCCCcE-EEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCccc
Q 013392 134 RSKEKARLRKGISI-LVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVS 212 (444)
Q Consensus 134 ~~~~~~~~~~~~~i-ii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 212 (444)
..+ ...+|..+...+..... ..++++|++|-+-+.... ...+..+...+....+
T Consensus 297 -----------ipv~v~~d~~~L~~aL~~lk~--~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~P---------- 351 (436)
T PRK11889 297 -----------FEVIAVRDEAAMTRALTYFKE--EARVDYILIDTAGKNYRA--SETVEEMIETMGQVEP---------- 351 (436)
T ss_pred -----------CcEEecCCHHHHHHHHHHHHh--ccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcCC----------
Confidence 112 23456666665543111 125789999998764432 2333333333322110
Q ss_pred ccceeEEEEEeecch-hhHHHHHhh
Q 013392 213 NVKRQNLLLSATLNE-KVNHLAKIS 236 (444)
Q Consensus 213 ~~~~~~i~~Sat~~~-~~~~~~~~~ 236 (444)
...++.+|||... ........+
T Consensus 352 --devlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 352 --DYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred --CeEEEEECCccChHHHHHHHHHh
Confidence 3345557887554 434455444
No 221
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.13 E-value=0.012 Score=49.16 Aligned_cols=48 Identities=27% Similarity=0.256 Sum_probs=34.1
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
+++.||+|+|||..++..+...+.. +.+++++... +...+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---------g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---------GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---------CCcEEEEECC-CCHHHHHHHHHHc
Confidence 6899999999998877766665533 4558887654 5566666666655
No 222
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.12 E-value=5.3e-05 Score=73.83 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=59.8
Q ss_pred CcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHH
Q 013392 301 SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFG 380 (444)
Q Consensus 301 ~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 380 (444)
.|+..|..+++.+ ...+++++||..-++..+.+.+++... + ....+.|......|+..+.
T Consensus 615 ~k~~~l~~~~~~l--~~~ghrvl~~~q~~~~ldlled~~~~~-----------------~-~~~r~dG~~~~~~rq~ai~ 674 (696)
T KOG0383|consen 615 GKLTLLLKMLKKL--KSSGHRVLIFSQMIHMLDLLEDYLTYE-----------------G-KYERIDGPITGPERQAAID 674 (696)
T ss_pred HHHHHHHHHHHHH--HhcchhhHHHHHHHHHHHHhHHHHhcc-----------------C-cceeccCCccchhhhhhcc
Confidence 3455555555555 356789999998888888888877654 5 6788999999999999999
Q ss_pred Hhhc---CCCcEEEEecccccC
Q 013392 381 AFKT---EKKALLLSTDVAARG 399 (444)
Q Consensus 381 ~f~~---g~~~iLi~t~~~~~G 399 (444)
.|.. .....|.+|.+.+.|
T Consensus 675 ~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 675 RFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred ccCCCCccceEEEeecccccCC
Confidence 9983 235678889887655
No 223
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.11 E-value=0.0061 Score=52.19 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=60.2
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (444)
.+++.||+|+|||-. +.++.+.+... .++.+++++... +........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~------~~~~~v~y~~~~-~f~~~~~~~~~~---------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ------HPGKRVVYLSAE-EFIREFADALRD---------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH------CTTS-EEEEEHH-HHHHHHHHHHHT----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc------cccccceeecHH-HHHHHHHHHHHc----------------------
Confidence 489999999999984 44455544431 234557765543 333333332222
Q ss_pred HHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhc-chhHHHHHHHHHhcCCCCCCCCCCCcccccce
Q 013392 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKR 216 (444)
Q Consensus 138 ~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 216 (444)
...+.+.+.+ ...+++++|++|.+... .+...+..++..+... ..
T Consensus 86 ------------~~~~~~~~~~--------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--------------~k 131 (219)
T PF00308_consen 86 ------------GEIEEFKDRL--------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--------------GK 131 (219)
T ss_dssp ------------TSHHHHHHHH--------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--------------TS
T ss_pred ------------ccchhhhhhh--------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--------------CC
Confidence 0112222222 36889999999987554 2345555566555442 55
Q ss_pred eEEEEEeecchhh
Q 013392 217 QNLLLSATLNEKV 229 (444)
Q Consensus 217 ~~i~~Sat~~~~~ 229 (444)
++++.|..+|...
T Consensus 132 ~li~ts~~~P~~l 144 (219)
T PF00308_consen 132 QLILTSDRPPSEL 144 (219)
T ss_dssp EEEEEESS-TTTT
T ss_pred eEEEEeCCCCccc
Confidence 7777776665543
No 224
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.0097 Score=54.19 Aligned_cols=41 Identities=15% Similarity=0.012 Sum_probs=31.8
Q ss_pred CCHHHHhHHHhHhcCC----cEEEEcCCCCchhHHhHHHHHHHHh
Q 013392 42 PTKVQAQAIPVILSGR----HVLVNAATGTGKTVAYLAPIINHLQ 82 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~~----~~il~~~tG~GKT~~~~~~~~~~~~ 82 (444)
++|||...+..+.... -.++.||.|.|||..+...+...+.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 5899999999888543 4689999999999877765555443
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.10 E-value=0.013 Score=53.17 Aligned_cols=45 Identities=24% Similarity=0.233 Sum_probs=28.5
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 109 (444)
.++++++.|+||+|||..+...+...+ . .+..|+++. ...+..+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~-~--------~g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELL-D--------RGKSVIYRT-ADELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H--------CCCeEEEEE-HHHHHHHH
Confidence 357899999999999986654444333 2 244566644 44554443
No 226
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.09 E-value=0.0054 Score=61.57 Aligned_cols=72 Identities=24% Similarity=0.171 Sum_probs=56.0
Q ss_pred CCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
..|++-|++|+.. ...+++|.|..|||||.+.+.-+...+.... ..+.++|+++.++..+..+.+++...++
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-----~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ-----AQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-----CCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 3599999999865 3457899999999999987766655554311 2355799999999999999999887654
No 227
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.06 E-value=0.0011 Score=57.72 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=51.0
Q ss_pred HHHHHhhcCCCcEEEEecccccCCCCCC--------CcEEEEccCCCCcchhhhcccccccCCCccc
Q 013392 377 TTFGAFKTEKKALLLSTDVAARGLDFPK--------VKCIIQYDSAGEATEYVHRYLKHLPVGNFYF 435 (444)
Q Consensus 377 ~~~~~f~~g~~~iLi~t~~~~~G~di~~--------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~ 435 (444)
...+.|.+|+.+|+|-+++.+.|+.+.. -++-|.+.+|||....+|..||+.|.||...
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~ 118 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSA 118 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccC
Confidence 4567899999999999999999999853 3456778899999999999999999998654
No 228
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.05 E-value=0.0096 Score=57.27 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=27.5
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 111 (444)
..+++.||+|+|||..+.. +...+... ..+.+++++ +...+..+...
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~------~~~~~v~yi-~~~~~~~~~~~ 195 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEK------NPNAKVVYV-TSEKFTNDFVN 195 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHh------CCCCeEEEE-EHHHHHHHHHH
Confidence 4589999999999976544 33333331 224446665 44455544433
No 229
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.05 E-value=0.037 Score=44.84 Aligned_cols=39 Identities=28% Similarity=0.298 Sum_probs=25.3
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~ 106 (444)
+++.|++|+|||..+...+..... .+..++++.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---------~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---------KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---------cCCEEEEEECCcchH
Confidence 578999999999876655444332 244577776654433
No 230
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.02 E-value=0.0021 Score=50.80 Aligned_cols=43 Identities=23% Similarity=0.202 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~ 107 (444)
+..+++.||+|+|||..+...+.. +.. ....++++.+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~-~~~--------~~~~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE-LGP--------PGGGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc-cCC--------CCCCEEEECCEEcccc
Confidence 457899999999999765543332 211 1124777776644433
No 231
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.00 E-value=0.014 Score=50.54 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=18.3
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
..+++.|++|+|||..+...+.+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l 123 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNEL 123 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999998766544443
No 232
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.00 E-value=0.09 Score=59.42 Aligned_cols=65 Identities=14% Similarity=0.242 Sum_probs=47.7
Q ss_pred CCCCCCHHHHhHHHhHhcC--CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHH
Q 013392 38 GFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~--~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 112 (444)
++. +++-|++++..++.+ +-.+|.|+.|+|||.+ +-.+...+.. .+.+|++++|+-.-+.++.+.
T Consensus 427 ~~~-Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~--------~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 427 EFA-LSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE--------QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred cCC-CCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHH
Confidence 443 899999999998865 4579999999999964 4444444433 467799999997766655543
No 233
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.00 E-value=0.009 Score=56.67 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=23.0
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
.+++.||+|+|||..+.. +.+.+... ..+.+++++.
T Consensus 138 ~l~l~G~~G~GKThL~~a-i~~~l~~~------~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHA-IGNEILEN------NPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHH-HHHHHHHh------CCCCcEEEEE
Confidence 578999999999986543 44444331 2244577764
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.0063 Score=53.25 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=42.0
Q ss_pred CCCCCCHHHHhHHHhHh-------cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHH
Q 013392 38 GFEAPTKVQAQAIPVIL-------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~-------~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 110 (444)
.|......+..++..+. +++++++.||+|+|||..+...+.... . .+..|+| ++..+++.++.
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~--------~g~sv~f-~~~~el~~~Lk 149 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K--------AGISVLF-ITAPDLLSKLK 149 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H--------cCCeEEE-EEHHHHHHHHH
Confidence 44434444555443332 678999999999999998776655555 3 2444555 56657777655
Q ss_pred HHHH
Q 013392 111 EILH 114 (444)
Q Consensus 111 ~~l~ 114 (444)
..+.
T Consensus 150 ~~~~ 153 (254)
T COG1484 150 AAFD 153 (254)
T ss_pred HHHh
Confidence 5443
No 235
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.94 E-value=0.0016 Score=56.52 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=27.4
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~ 107 (444)
+++.||||+||+-..-..+-..+.. .....|+||+|.+..+-
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~-------P~PETVfFItP~~~mIp 131 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQ-------PPPETVFFITPQKDMIP 131 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCccc-------CCCCceEEECCCCCCCC
Confidence 4888999999996433333333333 34556999999876543
No 236
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.92 E-value=0.014 Score=55.67 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=24.0
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEec
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 101 (444)
..+++.||+|+|||..+.. +.+.+... ..+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~a-i~~~l~~~------~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQS-IGNYVVQN------EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHH-HHHHHHHh------CCCCeEEEEEH
Confidence 3589999999999976543 34433331 22345777654
No 237
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.92 E-value=0.018 Score=54.47 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
++.+++.||||+|||.++...+....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45679999999999987776555443
No 238
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.84 E-value=0.0038 Score=54.23 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=18.6
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhc
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQS 83 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~ 83 (444)
+++.||||||||.+ +.+++.++-.
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 68889999999954 6667777654
No 239
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.83 E-value=0.02 Score=54.38 Aligned_cols=151 Identities=13% Similarity=0.134 Sum_probs=92.2
Q ss_pred CCCCCCHHHHhHHHhHh------cC----CcEEEEcCCCCchhHHhHHHHHHH-HhccCCCCCCCCCceEEEEeccHHHH
Q 013392 38 GFEAPTKVQAQAIPVIL------SG----RHVLVNAATGTGKTVAYLAPIINH-LQSYSPRIDRSSGTFALVLVPTRELC 106 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~------~~----~~~il~~~tG~GKT~~~~~~~~~~-~~~~~~~~~~~~~~~vlil~P~~~L~ 106 (444)
++. +-|||.-++..++ ++ +.++|..|-+-|||..+...+... +..+ ..+.++.+++|+.+-+
T Consensus 59 p~~-l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~------~~~~~~~i~A~s~~qa 131 (546)
T COG4626 59 PES-LEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW------RSGAGIYILAPSVEQA 131 (546)
T ss_pred ccc-cchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh------hcCCcEEEEeccHHHH
Confidence 454 8999999999888 12 346999999999998665333333 3232 2466799999999988
Q ss_pred HHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCc---EEEeCchHHHHHHh-ccCccccCCccEEEEechhHhh
Q 013392 107 LQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGIS---ILVATPGRLLDHLK-HTSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 107 ~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---iii~T~~~l~~~l~-~~~~~~~~~~~lvV~DE~h~~~ 182 (444)
.+....++....... ........+.+ |.+.--......+. ..+........+.|+||.|.+.
T Consensus 132 ~~~F~~ar~mv~~~~--------------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~ 197 (546)
T COG4626 132 ANSFNPARDMVKRDD--------------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFG 197 (546)
T ss_pred HHhhHHHHHHHHhCc--------------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhc
Confidence 888888877654322 11111111111 22221122222222 2234455567899999999866
Q ss_pred hcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEee
Q 013392 183 ELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSAT 224 (444)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat 224 (444)
+.+ ..+..+...+.... ..+++..|..
T Consensus 198 ~~~--~~~~~~~~g~~ar~-------------~~l~~~ITT~ 224 (546)
T COG4626 198 KQE--DMYSEAKGGLGARP-------------EGLVVYITTS 224 (546)
T ss_pred CHH--HHHHHHHhhhccCc-------------CceEEEEecC
Confidence 543 66666666666543 6677777753
No 240
>PRK08727 hypothetical protein; Validated
Probab=96.83 E-value=0.011 Score=51.33 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
..+++.|++|+|||..+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4589999999999975543
No 241
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.82 E-value=0.002 Score=63.10 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=78.5
Q ss_pred CCCHHHHhHHHhHhcC--CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHH-HHHHHHh
Q 013392 41 APTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY-EILHKLL 117 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~--~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~-~~l~~~~ 117 (444)
..+|||.+.++.+... +.+.+..++-+|||.+.+..+...+... ..-+|++.||...+..+. .++...+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--------P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD--------PGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC--------CCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 3789999999998754 5789999999999996665544444332 233999999999999997 6687777
Q ss_pred cccCceeeEEEe---CCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhh
Q 013392 118 HRFHWIVPGYVM---GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 118 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~ 182 (444)
...+.+...... .....+.....+. +..+.++...+- ..+....++++++||++.+.
T Consensus 88 ~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~-------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 RASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP-------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC-------cccccCCcCEEEEechhhcc
Confidence 654432211111 0111111112222 334544442222 22223478899999999874
No 242
>PLN03025 replication factor C subunit; Provisional
Probab=96.80 E-value=0.021 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=17.7
Q ss_pred CcEEEEcCCCCchhHHhHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
.++++.||+|+|||..+...+.+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999766654433
No 243
>PRK12377 putative replication protein; Provisional
Probab=96.80 E-value=0.026 Score=49.04 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=18.3
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
.++++.||+|+|||..+...+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999998665544333
No 244
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.78 E-value=0.028 Score=49.57 Aligned_cols=111 Identities=20% Similarity=0.296 Sum_probs=59.8
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhc-cCCCCC--CCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcc
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQS-YSPRID--RSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGEN 133 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~-~~~~~~--~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (444)
.+.+++|+||.|||.++ .++.. .+...+ ...-+.+.+-+|...-....+..+-..+.... .....
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~-------~~~~~ 129 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY-------RPRDR 129 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc-------CCCCC
Confidence 47899999999999743 22222 111111 11235567777777766666666554433110 00001
Q ss_pred hhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcch--hHHHHHHHHHhcC
Q 013392 134 RSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF--GKEIEEILDILGS 199 (444)
Q Consensus 134 ~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~--~~~~~~~~~~l~~ 199 (444)
..... +....++.. -+++++|+||+|+++..+. .+.+.+.++.+.+
T Consensus 130 ~~~~~--------------~~~~~llr~------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N 177 (302)
T PF05621_consen 130 VAKLE--------------QQVLRLLRR------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN 177 (302)
T ss_pred HHHHH--------------HHHHHHHHH------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh
Confidence 11100 112233333 3678999999999877643 3445555666554
No 245
>PRK06893 DNA replication initiation factor; Validated
Probab=96.77 E-value=0.011 Score=51.12 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=16.7
Q ss_pred CcEEEEcCCCCchhHHhHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
..+++.||+|+|||..+...+-+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34699999999999765544333
No 246
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.054 Score=49.01 Aligned_cols=43 Identities=28% Similarity=0.289 Sum_probs=32.0
Q ss_pred CCCCHHHHhHHHhHh----cCC---cEEEEcCCCCchhHHhHHHHHHHHh
Q 013392 40 EAPTKVQAQAIPVIL----SGR---HVLVNAATGTGKTVAYLAPIINHLQ 82 (444)
Q Consensus 40 ~~~~~~Q~~~~~~~~----~~~---~~il~~~tG~GKT~~~~~~~~~~~~ 82 (444)
+.++|||..++..+. +++ -.++.||.|.||+..+...+...+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence 468899999988876 332 4789999999999877665444443
No 247
>PRK14974 cell division protein FtsY; Provisional
Probab=96.76 E-value=0.035 Score=50.53 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=31.5
Q ss_pred CccEEEEechhHhhhc-chhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHh
Q 013392 169 NLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKI 235 (444)
Q Consensus 169 ~~~lvV~DE~h~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~ 235 (444)
..++|++|.++++... .....+..+...... ...++.++|+...........
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p---------------d~~iLVl~a~~g~d~~~~a~~ 274 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKP---------------DLVIFVGDALAGNDAVEQARE 274 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCC---------------ceEEEeeccccchhHHHHHHH
Confidence 5689999999976432 334455555544432 555677788766544443443
No 248
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.74 E-value=0.018 Score=49.95 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
+..+++.||+|+|||..+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 35789999999999976543
No 249
>PRK08116 hypothetical protein; Validated
Probab=96.74 E-value=0.022 Score=50.34 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=18.5
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHh
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQ 82 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~ 82 (444)
..+++.|++|+|||..+.. +.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l~ 139 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANELI 139 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 3489999999999987664 444443
No 250
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.007 Score=49.28 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=60.4
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (444)
=.++.+|++||||...+..+..... .+.++++..|...--.+ ... .....|.+.
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~---------~g~~v~vfkp~iD~R~~-------------~~~-V~Sr~G~~~--- 59 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKE---------AGMKVLVFKPAIDTRYG-------------VGK-VSSRIGLSS--- 59 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHH---------cCCeEEEEecccccccc-------------cce-eeeccCCcc---
Confidence 3588999999999865554444332 36668998886321110 000 111111111
Q ss_pred HHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHh
Q 013392 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197 (444)
Q Consensus 138 ~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l 197 (444)
.-++|-++..+...+....... .++.|.+||++ +++......+..+...+
T Consensus 60 -------~A~~i~~~~~i~~~i~~~~~~~--~~~~v~IDEaQ-F~~~~~v~~l~~lad~l 109 (201)
T COG1435 60 -------EAVVIPSDTDIFDEIAALHEKP--PVDCVLIDEAQ-FFDEELVYVLNELADRL 109 (201)
T ss_pred -------cceecCChHHHHHHHHhcccCC--CcCEEEEehhH-hCCHHHHHHHHHHHhhc
Confidence 1266667777777776522211 37899999999 76665555666666554
No 251
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.73 E-value=0.02 Score=62.04 Aligned_cols=62 Identities=29% Similarity=0.308 Sum_probs=44.1
Q ss_pred CCCHHHHhHHHhHhcC--CcEEEEcCCCCchhHHhHH--HHHHHHhccCCCCCCCCCceEEEEeccHHHHHHH
Q 013392 41 APTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLA--PIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~--~~~il~~~tG~GKT~~~~~--~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 109 (444)
.+++-|++|+..++.+ +-++|.|..|+|||.+.-. .++..+.. ..+.+++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-------ccCceEEEEechHHHHHHH
Confidence 4999999999999855 6689999999999976322 22222211 2345688999996666554
No 252
>PRK05642 DNA replication initiation factor; Validated
Probab=96.71 E-value=0.018 Score=49.94 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchhHHhH
Q 013392 57 RHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~ 74 (444)
..++++|++|+|||..+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 467899999999997633
No 253
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.68 E-value=0.011 Score=59.99 Aligned_cols=70 Identities=21% Similarity=0.146 Sum_probs=55.8
Q ss_pred CCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
|++-|++++.. ...+++|.|+.|||||.+.+.-+...+.... ....++|+|+.|+..+.++.+++.+.++
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-----~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-----YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78999999876 4568999999999999987777766664311 1345699999999999999999988764
No 254
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.68 E-value=0.025 Score=54.14 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=29.3
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l 113 (444)
..+++.|++|+|||..+ .++.+.+... .++.+++++.+ ..+..+....+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~------~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN------FSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHH
Confidence 45899999999999654 3444444321 23455776555 45555554443
No 255
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.67 E-value=0.0059 Score=62.41 Aligned_cols=72 Identities=21% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
..|++-|++++.. ...+++|.|..|||||.+.+.-+...+.... -...++|+++.|+..+.++.+++.+..+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~-----v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN-----ASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999976 4568999999999999987766666554311 2355699999999999999999988764
No 256
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.019 Score=51.81 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=47.1
Q ss_pred cccCCccccCCCHHHHHHHHHHc-------------CCCCCCHHHHhHH------HhHhcC-----CcEEEEcCCCCchh
Q 013392 15 FASCSFSSLGLHSTLCDQLRERL-------------GFEAPTKVQAQAI------PVILSG-----RHVLVNAATGTGKT 70 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~-------------~~~~~~~~Q~~~~------~~~~~~-----~~~il~~~tG~GKT 70 (444)
-+...|++++....+.+.|.... |.++-...-+||+ +.+++| +.+++.||+|+|||
T Consensus 180 ~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKT 259 (491)
T KOG0738|consen 180 GEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKT 259 (491)
T ss_pred cccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHH
Confidence 35667888888888888885443 1111111222222 223344 67999999999999
Q ss_pred HHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHH
Q 013392 71 VAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (444)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 110 (444)
+.+=..+-+ .....|=+.+..|+..|.
T Consensus 260 lLAKAvATE-------------c~tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 260 LLAKAVATE-------------CGTTFFNVSSSTLTSKWR 286 (491)
T ss_pred HHHHHHHHh-------------hcCeEEEechhhhhhhhc
Confidence 754322211 123566666656655444
No 257
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.63 E-value=0.043 Score=53.61 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHH
Q 013392 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~ 106 (444)
+++.+.|+..|+...+.. .+++. .+.+..++..|=-.|||.... +++..+... ..+.++++.+|.+..+
T Consensus 229 ~r~~~~lk~~Fdi~~~s~---~~~~~-fkqk~tVflVPRR~GKTwivv-~iI~~ll~s------~~Gi~IgytAH~~~ts 297 (738)
T PHA03368 229 ERVERFLRTVFNTPLFSD---AAVRH-FRQRATVFLVPRRHGKTWFLV-PLIALALAT------FRGIKIGYTAHIRKAT 297 (738)
T ss_pred HHHHHHHHHHcCCccccH---HHHHH-hhccceEEEecccCCchhhHH-HHHHHHHHh------CCCCEEEEEcCcHHHH
Confidence 344555544444432222 22222 356677888999999998766 444433321 2477799999999999
Q ss_pred HHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCC--CcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhc
Q 013392 107 LQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKG--ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184 (444)
Q Consensus 107 ~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~ 184 (444)
+...+++...+..+..........|... ...+.++ ..|.+.|- ...+..-...++++|+|||+-+.+
T Consensus 298 ~~vF~eI~~~le~~f~~~~v~~vkGe~I---~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~- 366 (738)
T PHA03368 298 EPVFEEIGARLRQWFGASRVDHVKGETI---SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRP- 366 (738)
T ss_pred HHHHHHHHHHHhhhcchhheeeecCcEE---EEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCH-
Confidence 9999999887764421111111111100 0011111 23444421 112334445899999999996544
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecc
Q 013392 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (444)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~ 226 (444)
..+..++-.+... .++++++|.|-+
T Consensus 367 ---~al~~ilp~l~~~--------------n~k~I~ISS~Ns 391 (738)
T PHA03368 367 ---DAVQTIMGFLNQT--------------NCKIIFVSSTNT 391 (738)
T ss_pred ---HHHHHHHHHHhcc--------------CccEEEEecCCC
Confidence 3444444333322 667788887743
No 258
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.61 E-value=0.015 Score=56.28 Aligned_cols=140 Identities=18% Similarity=0.144 Sum_probs=78.8
Q ss_pred HHHHhHHHhHh-----cC----CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHH
Q 013392 44 KVQAQAIPVIL-----SG----RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (444)
Q Consensus 44 ~~Q~~~~~~~~-----~~----~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~ 114 (444)
|+|+-.+..++ .+ +.+++..|=|.|||..+...++..+.-. ...+..+++.++++..+......+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-----g~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-----GEPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----CccCceEEEEeCCHHHHHHHHHHHH
Confidence 56776666655 12 3579999999999987665555544331 1245679999999999999999998
Q ss_pred HHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhc-cCccccCCccEEEEechhHhhhcchhHHHHHH
Q 013392 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKH-TSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193 (444)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~-~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~ 193 (444)
.+....+......- ..........|.......++..+.. .+.....+..++|+||+|...+. .....+
T Consensus 76 ~~i~~~~~l~~~~~--------~~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~---~~~~~l 144 (477)
T PF03354_consen 76 KMIEASPELRKRKK--------PKIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDD---ELYDAL 144 (477)
T ss_pred HHHHhChhhccchh--------hhhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCH---HHHHHH
Confidence 88765321110000 0000001112333222333222222 22333446789999999976442 244444
Q ss_pred HHHhcC
Q 013392 194 LDILGS 199 (444)
Q Consensus 194 ~~~l~~ 199 (444)
......
T Consensus 145 ~~g~~~ 150 (477)
T PF03354_consen 145 ESGMGA 150 (477)
T ss_pred Hhhhcc
Confidence 444443
No 259
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.59 E-value=0.0069 Score=61.88 Aligned_cols=72 Identities=21% Similarity=0.211 Sum_probs=57.0
Q ss_pred CCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
..|++-|++++.. ...+++|.|+.|||||.+.+.-+...+.... -...++|+|+-|+..+.++.+++.+..+
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-----ASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3599999999976 4568999999999999987776666554311 2345699999999999999999988764
No 260
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.57 E-value=0.034 Score=50.85 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=17.1
Q ss_pred CccEEEEechhHhhhcchhHHHHHHHHH
Q 013392 169 NLRWIIFDEADRILELGFGKEIEEILDI 196 (444)
Q Consensus 169 ~~~lvV~DE~h~~~~~~~~~~~~~~~~~ 196 (444)
..++||+||+|.+........+..+++.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~ 127 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEA 127 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHh
Confidence 4579999999976333233444444444
No 261
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.57 E-value=0.035 Score=49.09 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=17.5
Q ss_pred CcEEEEcCCCCchhHHhHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPII 78 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~ 78 (444)
.++++.||+|+|||..+-..+.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999987665443
No 262
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.54 E-value=0.027 Score=61.03 Aligned_cols=124 Identities=20% Similarity=0.186 Sum_probs=80.9
Q ss_pred CCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccC
Q 013392 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~ 121 (444)
+++-|.+++.. .+++++|.|+.|||||.+.+--++..+... ....++|+|+=|+..+.++.+++.+.+...-
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~ 73 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG------VDIDRLLVVTFTNAAAREMKERIEEALQKAL 73 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC------CCHhhEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 67899999984 688999999999999998877777766542 1234599999999999999999888664321
Q ss_pred ceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCcccc-CCccEEEEechhH
Q 013392 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLH-TNLRWIIFDEADR 180 (444)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~-~~~~lvV~DE~h~ 180 (444)
.. ........+.+..-...-|+|...+...+-+...+.+ -+.+.=|.||...
T Consensus 74 ~~-------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 QQ-------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred hc-------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 0011112222333345789999887654443222111 1224556888875
No 263
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.53 E-value=0.024 Score=55.40 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=26.6
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 111 (444)
.++|.|++|+|||..+- ++.+.+... ..+.+++++. ...++.++..
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~~------~~g~~V~Yit-aeef~~el~~ 361 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARRL------YPGTRVRYVS-SEEFTNEFIN 361 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHHh------CCCCeEEEee-HHHHHHHHHH
Confidence 48999999999997543 333433321 1244566654 4455554433
No 264
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.061 Score=51.65 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=40.0
Q ss_pred hhhhhccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHh--cCCcEEEEcCCCCchhHHhHHH
Q 013392 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~il~~~tG~GKT~~~~~~ 76 (444)
.+....--..+|++.|=-+++...|+-. +..|-.+| +.+.++- .-..++++||+|+|||+.|=..
T Consensus 499 REGF~tVPdVtW~dIGaL~~vR~eL~~a--I~~PiK~p-d~~k~lGi~~PsGvLL~GPPGCGKTLlAKAV 565 (802)
T KOG0733|consen 499 REGFATVPDVTWDDIGALEEVRLELNMA--ILAPIKRP-DLFKALGIDAPSGVLLCGPPGCGKTLLAKAV 565 (802)
T ss_pred cccceecCCCChhhcccHHHHHHHHHHH--HhhhccCH-HHHHHhCCCCCCceEEeCCCCccHHHHHHHH
Confidence 3333344467899999888888888433 21121111 2233322 2456999999999999865443
No 265
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.063 Score=51.49 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
.++.+.+.||+|+|||.++...+....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456788999999999987765554433
No 266
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.50 E-value=0.028 Score=53.59 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=25.3
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~ 107 (444)
..+++.||+|+|||..+. ++...+.. .+.+++++.. ..+..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~--------~~~~v~yi~~-~~f~~ 182 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRE--------SGGKILYVRS-ELFTE 182 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHH--------cCCCEEEeeH-HHHHH
Confidence 458999999999997544 34444433 1345777653 34443
No 267
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.06 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=19.0
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
+..+++||.|+|||.++.+.+...
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHH
Confidence 358999999999998877655443
No 268
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.072 Score=48.68 Aligned_cols=41 Identities=15% Similarity=0.034 Sum_probs=29.9
Q ss_pred CCHHHHhHHHhHhc--C---CcEEEEcCCCCchhHHhHHHHHHHHh
Q 013392 42 PTKVQAQAIPVILS--G---RHVLVNAATGTGKTVAYLAPIINHLQ 82 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~--~---~~~il~~~tG~GKT~~~~~~~~~~~~ 82 (444)
++|||...+..+.+ + +-.++.||.|.||+..+...+...+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 46888888887763 2 34689999999999877665544443
No 269
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.42 E-value=0.016 Score=51.77 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=18.8
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
+.+++.||||+|||.++...+....
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999987766554443
No 270
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.095 Score=47.54 Aligned_cols=41 Identities=17% Similarity=0.059 Sum_probs=29.4
Q ss_pred CCHHHHhHHHhHh----cC---CcEEEEcCCCCchhHHhHHHHHHHHh
Q 013392 42 PTKVQAQAIPVIL----SG---RHVLVNAATGTGKTVAYLAPIINHLQ 82 (444)
Q Consensus 42 ~~~~Q~~~~~~~~----~~---~~~il~~~tG~GKT~~~~~~~~~~~~ 82 (444)
++|||+..+..+. ++ +-.++.||.|.||+..+...+...+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 4678877777765 33 34689999999999877765555443
No 271
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.38 E-value=0.0053 Score=59.15 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHh
Q 013392 303 LAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAF 382 (444)
Q Consensus 303 ~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f 382 (444)
+..+...+..+.. .-++.+++|.++.+....+.......+-. .-..+.+.+.+-...+ -..+++.|
T Consensus 614 l~~l~~~~~nL~~-~VPgGvV~FfPSy~yL~~v~k~w~~~gil----------~ri~~kK~vF~E~k~~---~~dvl~~Y 679 (821)
T KOG1133|consen 614 IKDLGSSISNLSN-AVPGGVVCFFPSYAYLGQVRKRWEQNGIL----------ARIVGKKKVFYEPKDT---VEDVLEGY 679 (821)
T ss_pred HHHHHHHHHHHHh-hCCCcEEEEeccHHHHHHHHHHHHhcchH----------HHhhccchhhccCccc---HHHHHHHH
Confidence 3344444554443 34578999999998887777776643210 0011223333333333 23445554
Q ss_pred h----cCCCcEEEEe--cccccCCCCCC--CcEEEEccCCCC--------------------------------cchhhh
Q 013392 383 K----TEKKALLLST--DVAARGLDFPK--VKCIIQYDSAGE--------------------------------ATEYVH 422 (444)
Q Consensus 383 ~----~g~~~iLi~t--~~~~~G~di~~--~~~vi~~~~~~s--------------------------------~~~~~Q 422 (444)
. .|...+|+|. .-+++|+|+.+ ++.|+.++.|.. +..--|
T Consensus 680 a~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQ 759 (821)
T KOG1133|consen 680 AEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQ 759 (821)
T ss_pred HHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHH
Confidence 3 4666778774 57899999975 788888886642 012358
Q ss_pred cccccccCCCcccccceE
Q 013392 423 RYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 423 ~~GR~~R~g~~g~~~~~i 440 (444)
.+|||.|+-++-.+|.++
T Consensus 760 sIGRAIRH~~DYA~i~Ll 777 (821)
T KOG1133|consen 760 SIGRAIRHRKDYASIYLL 777 (821)
T ss_pred HHHHHHhhhccceeEEEe
Confidence 899999998877776554
No 272
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.38 E-value=0.073 Score=47.44 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=35.6
Q ss_pred hHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 52 VILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 52 ~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
-+..+.-+++.|++|+|||..++..+.+.... .+.+++|+.-- .-..+...++...
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--------~g~~vl~iS~E-~~~~~~~~r~~~~ 81 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQ--------HGVRVGTISLE-EPVVRTARRLLGQ 81 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--------cCceEEEEEcc-cCHHHHHHHHHHH
Confidence 34466778999999999998766655554422 25558887643 3345555555443
No 273
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.38 E-value=0.053 Score=59.77 Aligned_cols=66 Identities=23% Similarity=0.269 Sum_probs=45.2
Q ss_pred CCCCCCHHHHhHHHhHhcC--CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHH
Q 013392 38 GFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~--~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 109 (444)
++ .+++.|++|+..++.+ +-++|.|..|+|||.+. -.+...+.... ...+.+++.++||-.-+..+
T Consensus 965 ~~-~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~----~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 965 ME-GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLP----ESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred cC-CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhh----cccCceEEEECCcHHHHHHH
Confidence 44 4999999999999975 46799999999999753 33333332100 02345688999996666543
No 274
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.37 E-value=0.081 Score=52.00 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=51.1
Q ss_pred CCHHHHhHHHhHh---cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 42 PTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 42 ~~~~Q~~~~~~~~---~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
|+|.-.+-++.++ +.+-.++.+|=|.|||.+..+.+...+.. .+.++++.+|...-+.+..+++...+.
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3454444444444 55678899999999998877666655432 245699999999999999998888876
Q ss_pred c
Q 013392 119 R 119 (444)
Q Consensus 119 ~ 119 (444)
.
T Consensus 242 ~ 242 (752)
T PHA03333 242 A 242 (752)
T ss_pred H
Confidence 4
No 275
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.33 E-value=0.14 Score=41.52 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=19.0
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhc
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQS 83 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~ 83 (444)
..++.||.|+||+..+...+...+..
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~ 46 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCS 46 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-T
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 46999999999998776655544433
No 276
>PRK09183 transposase/IS protein; Provisional
Probab=96.30 E-value=0.044 Score=48.24 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=20.6
Q ss_pred HhcCCcEEEEcCCCCchhHHhHHHHH
Q 013392 53 ILSGRHVLVNAATGTGKTVAYLAPII 78 (444)
Q Consensus 53 ~~~~~~~il~~~tG~GKT~~~~~~~~ 78 (444)
+..+.++++.||+|+|||..+.....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 44678899999999999987665433
No 277
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.29 E-value=0.037 Score=55.91 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCchhHHhHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~ 76 (444)
.++++.||+|+|||..+...
T Consensus 53 ~slLL~GPpGtGKTTLA~aI 72 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARII 72 (725)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999766543
No 278
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.29 E-value=0.039 Score=52.26 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=79.7
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHH-HHHHHHHHHHHHhcccCceeeEEEeCCcchhH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE-LCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~-L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (444)
-.++.|+.|||||..+...++..+... .++.+++++-|+.. +..-....+...+..++......... ..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~--~~-- 72 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSK--SS-- 72 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecC--Cc--
Confidence 357899999999999888887777662 13566888888877 55555677777665544211111100 00
Q ss_pred HHHHhcC-CCcEEEeCc-hHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCccccc
Q 013392 137 EKARLRK-GISILVATP-GRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214 (444)
Q Consensus 137 ~~~~~~~-~~~iii~T~-~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 214 (444)
..-.+.+ +..|++..- +.-.. +. ....++++.+||+..+.. ..+..+..+++...
T Consensus 73 ~~i~~~~~g~~i~f~g~~d~~~~-ik-----~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~------------- 129 (396)
T TIGR01547 73 MEIKILNTGKKFIFKGLNDKPNK-LK-----SGAGIAIIWFEEASQLTF----EDIKELIPRLRETG------------- 129 (396)
T ss_pred cEEEecCCCeEEEeecccCChhH-hh-----CcceeeeehhhhhhhcCH----HHHHHHHHHhhccC-------------
Confidence 0000111 334555443 22211 11 122468999999997633 34444444444211
Q ss_pred ceeEEEEEeecchhhHHHHHhh
Q 013392 215 KRQNLLLSATLNEKVNHLAKIS 236 (444)
Q Consensus 215 ~~~~i~~Sat~~~~~~~~~~~~ 236 (444)
....+++|.+|......+...+
T Consensus 130 ~~~~i~~t~NP~~~~~w~~~~f 151 (396)
T TIGR01547 130 GKKFIIFSSNPESPLHWVKKRF 151 (396)
T ss_pred CccEEEEEcCcCCCccHHHHHH
Confidence 1124667777765444444433
No 279
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.28 E-value=0.015 Score=48.84 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchhHHhHHH
Q 013392 58 HVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~ 76 (444)
+++++||+|+|||..|-+.
T Consensus 52 h~lf~GPPG~GKTTLA~II 70 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARII 70 (233)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHH
Confidence 5899999999999765543
No 280
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.26 E-value=0.057 Score=41.91 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=14.4
Q ss_pred EEEEcCCCCchhHHhHHH
Q 013392 59 VLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~ 76 (444)
+++.||+|+|||..+-..
T Consensus 1 ill~G~~G~GKT~l~~~l 18 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARAL 18 (132)
T ss_dssp EEEESSTTSSHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHH
Confidence 589999999999765543
No 281
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.25 E-value=0.061 Score=52.87 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=18.6
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
-++++||.|+|||..+...+....
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 469999999999988776555444
No 282
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.25 E-value=0.053 Score=51.51 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=17.3
Q ss_pred EEEEcCCCCchhHHhHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~ 79 (444)
.++.||.|+|||.++.+.+..
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 699999999999877765544
No 283
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.25 E-value=0.027 Score=53.82 Aligned_cols=68 Identities=26% Similarity=0.327 Sum_probs=48.3
Q ss_pred HHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 46 QAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 46 Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
|-+++.. -.++-++++|..|||||.+++.=+...+..+..... ...+|++.|++....-....+=+++
T Consensus 217 QneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~---~k~vlvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 217 QNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQ---AKPVLVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred HHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccc---cCceEEEcCcHHHHHHHHHhchhhc
Confidence 4444432 356678999999999999999888887776554322 3339999999988876666555543
No 284
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.23 E-value=0.092 Score=49.72 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCchhHHhHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~ 77 (444)
.++++.||+|+|||..+-..+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~ 76 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVF 76 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 568999999999997655433
No 285
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.14 Score=44.71 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=35.7
Q ss_pred HhHhcCC-----cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 51 PVILSGR-----HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 51 ~~~~~~~-----~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
+.+.+|+ .+++.||+|+||++.+-..+-+ .....|-+.+..|+..|.-+-.++
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE-------------AnSTFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE-------------ANSTFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh-------------cCCceEEeehHHHHHHHhccHHHH
Confidence 3455664 4799999999999754332221 112788889989998877665554
No 286
>CHL00181 cbbX CbbX; Provisional
Probab=96.18 E-value=0.097 Score=46.85 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
+.++++.||+|+|||..+-..+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999887665443
No 287
>PF13173 AAA_14: AAA domain
Probab=96.15 E-value=0.1 Score=40.43 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
++-+++.||.|+|||..+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~ 21 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQ 21 (128)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56689999999999975444
No 288
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.15 E-value=0.11 Score=52.68 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=22.7
Q ss_pred CHHHHhHHHhHh----cC---CcE-EEEcCCCCchhHHhHHHH
Q 013392 43 TKVQAQAIPVIL----SG---RHV-LVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 43 ~~~Q~~~~~~~~----~~---~~~-il~~~tG~GKT~~~~~~~ 77 (444)
|.-|.+.+..++ .+ .++ +|.|+||+|||.++...+
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 556655554433 22 234 599999999998766644
No 289
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.15 E-value=0.059 Score=51.22 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCchhHHhHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~ 76 (444)
..+++.||+|+|||..+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARII 56 (413)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999765543
No 290
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.14 E-value=0.08 Score=45.68 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
.+..+++.||+|+|||..+...+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999876554433
No 291
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.13 E-value=0.14 Score=46.18 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
++++++.|++|+|||..+...+....
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999987665444433
No 292
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.11 E-value=0.068 Score=51.65 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=18.9
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
+.+++.||.|+|||.++.+.+...
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999998877655443
No 293
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.16 Score=49.48 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=18.5
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
-.++.||.|+|||.++.+.+....
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 369999999999987776554443
No 294
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.01 E-value=0.16 Score=52.29 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=19.2
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
-+|+.||.|+|||.++.+.+....
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 369999999999998877665544
No 295
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.99 E-value=0.17 Score=46.34 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=29.7
Q ss_pred CCHHHHhHHHhHh----cC---CcEEEEcCCCCchhHHhHHHHHHHHh
Q 013392 42 PTKVQAQAIPVIL----SG---RHVLVNAATGTGKTVAYLAPIINHLQ 82 (444)
Q Consensus 42 ~~~~Q~~~~~~~~----~~---~~~il~~~tG~GKT~~~~~~~~~~~~ 82 (444)
++|||...+..+. ++ +-.++.||.|.||+..+...+...+.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC 50 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMC 50 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcC
Confidence 6788888887766 33 24689999999999877665444443
No 296
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.99 E-value=0.16 Score=45.48 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCchhHHhHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~ 77 (444)
+.++++.||+|+|||..+...+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia 79 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMA 79 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHH
Confidence 3478999999999998775433
No 297
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.95 E-value=0.027 Score=57.84 Aligned_cols=72 Identities=21% Similarity=0.195 Sum_probs=56.7
Q ss_pred CCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
..|++-|++++.. ...+++|.|..|||||.+.+.-+.+.+.... -.+.++|+++-|+..+..+.+++.+..+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-----i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-----VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-----CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999976 4568999999999999987777666664311 1245699999999999999999887654
No 298
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=0.23 Score=45.02 Aligned_cols=41 Identities=15% Similarity=-0.003 Sum_probs=29.7
Q ss_pred CCHHHHhHHHhHh----cCC---cEEEEcCCCCchhHHhHHHHHHHHh
Q 013392 42 PTKVQAQAIPVIL----SGR---HVLVNAATGTGKTVAYLAPIINHLQ 82 (444)
Q Consensus 42 ~~~~Q~~~~~~~~----~~~---~~il~~~tG~GKT~~~~~~~~~~~~ 82 (444)
++|||...+..+. +++ -.++.||.|.||+..+...+...+.
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC 51 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLC 51 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 6788888887766 232 4799999999999776665544443
No 299
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.93 E-value=0.17 Score=43.68 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=33.9
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.+.-+++.|++|+|||..++..+...+.. +.+++++... .-..+..+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---------g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQN---------GYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhC---------CCcEEEEeCC-CCHHHHHHHHHHh
Confidence 46678999999999998766655554322 4557888743 3345555555443
No 300
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.93 E-value=0.0022 Score=52.13 Aligned_cols=102 Identities=22% Similarity=0.197 Sum_probs=40.3
Q ss_pred EEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHH
Q 013392 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139 (444)
Q Consensus 60 il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (444)
++.|+-|-|||.+.-+++...+.. ...++++-+|+.+-++...+.+...+...+....... .......
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~--------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~----~~~~~~~ 68 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK--------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK----RIGQIIK 68 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------------EEEE-SS--S-HHHHHCC--------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh--------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccc----ccccccc
Confidence 578999999996554443333222 1245999999998888877766655443321110000 0000000
Q ss_pred HhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHh
Q 013392 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI 181 (444)
Q Consensus 140 ~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~ 181 (444)
....+..|-+..|+.+...- ...+++|+||+=.+
T Consensus 69 ~~~~~~~i~f~~Pd~l~~~~--------~~~DlliVDEAAaI 102 (177)
T PF05127_consen 69 LRFNKQRIEFVAPDELLAEK--------PQADLLIVDEAAAI 102 (177)
T ss_dssp ----CCC--B--HHHHCCT------------SCEEECTGGGS
T ss_pred cccccceEEEECCHHHHhCc--------CCCCEEEEechhcC
Confidence 01123456666666664421 14589999999754
No 301
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.93 E-value=0.26 Score=49.53 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=18.1
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
-+|++|+.|+|||.++...+....
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 358999999999987766554433
No 302
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.92 E-value=0.086 Score=45.54 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCCchhHHhHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~ 76 (444)
.+..+++.|++|+|||..+...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai 62 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQAL 62 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3467999999999999755543
No 303
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.22 Score=46.22 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=18.5
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
.++++.|+||+|||.++-..+-+.
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l 66 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEEL 66 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHH
Confidence 469999999999998766644443
No 304
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.91 E-value=0.058 Score=54.03 Aligned_cols=96 Identities=13% Similarity=0.057 Sum_probs=80.4
Q ss_pred CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
.+.|.+..+.++.... ..+..+||.++.+..+..+.+.|++.. ++..++.+|++++..+|.+.
T Consensus 170 GSGKTevyl~~i~~~l--~~Gk~vLvLvPEi~lt~q~~~rl~~~f---------------~~~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 170 GEDWARRLAAAAAATL--RAGRGALVVVPDQRDVDRLEAALRALL---------------GAGDVAVLSAGLGPADRYRR 232 (665)
T ss_pred CCcHHHHHHHHHHHHH--HcCCeEEEEecchhhHHHHHHHHHHHc---------------CCCcEEEECCCCCHHHHHHH
Confidence 5689999999998875 457789999999999999999998763 23678999999999999999
Q ss_pred HHHhhcCCCcEEEEecccccCCCCCCCcEEEEcc
Q 013392 379 FGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~ 412 (444)
.....+|+.+|+|+|..+.. .-++++..||..+
T Consensus 233 w~~~~~G~~~IViGtRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred HHHHhCCCCcEEEEcceeEE-eccCCCCEEEEEc
Confidence 99999999999999986533 3566888888654
No 305
>PRK04195 replication factor C large subunit; Provisional
Probab=95.91 E-value=0.053 Score=52.69 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchhHHhHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~ 76 (444)
.+.+++.||+|+|||..+-..
T Consensus 39 ~~~lLL~GppG~GKTtla~al 59 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHAL 59 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 467899999999999765543
No 306
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.90 E-value=0.078 Score=49.24 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=33.0
Q ss_pred CccEEEEechhHhhhc-chhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHH
Q 013392 169 NLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH 231 (444)
Q Consensus 169 ~~~lvV~DE~h~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~ 231 (444)
+++++++|+++.+... .....+-.++..+... ..|+++.|..+|.....
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--------------~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--------------GKQIVLTSDRPPKELNG 224 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--------------CCEEEEEcCCCchhhcc
Confidence 6789999999976554 3455555666666543 44888877776665443
No 307
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.88 E-value=0.12 Score=47.82 Aligned_cols=20 Identities=45% Similarity=0.595 Sum_probs=16.5
Q ss_pred cEEEEcCCCCchhHHhHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~ 77 (444)
.+++.||+|+|||..+...+
T Consensus 38 ~lll~Gp~GtGKT~la~~~~ 57 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALA 57 (337)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999998765544
No 308
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.88 E-value=0.16 Score=48.88 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=16.8
Q ss_pred EEEEcCCCCchhHHhHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~ 79 (444)
+++.||+|+|||..+.+.+..
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 699999999999877664443
No 309
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.87 E-value=0.038 Score=55.32 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=83.1
Q ss_pred EcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHH
Q 013392 296 KVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDR 375 (444)
Q Consensus 296 ~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 375 (444)
.+..+.|.+..++.+.... ..+..+||.++.+.....+.+-|+.+. +.+++++|+++++.+|
T Consensus 224 GvTGSGKTEvYl~~i~~~L--~~GkqvLvLVPEI~Ltpq~~~rf~~rF----------------g~~v~vlHS~Ls~~er 285 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVL--AQGKQVLVLVPEIALTPQLLARFKARF----------------GAKVAVLHSGLSPGER 285 (730)
T ss_pred CCCCCcHHHHHHHHHHHHH--HcCCEEEEEeccccchHHHHHHHHHHh----------------CCChhhhcccCChHHH
Confidence 4677889999999999885 557899999999999999999888874 6889999999999999
Q ss_pred HHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEc
Q 013392 376 RTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (444)
Q Consensus 376 ~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~ 411 (444)
.+...+..+|+.+|+|+|..+-- .-++++..||..
T Consensus 286 ~~~W~~~~~G~~~vVIGtRSAlF-~Pf~~LGLIIvD 320 (730)
T COG1198 286 YRVWRRARRGEARVVIGTRSALF-LPFKNLGLIIVD 320 (730)
T ss_pred HHHHHHHhcCCceEEEEechhhc-CchhhccEEEEe
Confidence 99999999999999999976432 346688888754
No 310
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.86 E-value=0.15 Score=50.60 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=19.6
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
+.+++.||.|+|||.++.+.+....
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhC
Confidence 3589999999999988777655544
No 311
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.85 E-value=0.023 Score=46.81 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=28.3
Q ss_pred HhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHH
Q 013392 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (444)
Q Consensus 53 ~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q 108 (444)
+.+++++++.|++|+|||..+...+.+.+.. +..++++ +..+|...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~---------g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK---------GYSVLFI-TASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT---------T--EEEE-EHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC---------CcceeEe-ecCceecc
Confidence 3367889999999999999877655554432 4446665 44455554
No 312
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.82 E-value=0.079 Score=50.66 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=37.7
Q ss_pred hHHHhHhc-----CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 48 QAIPVILS-----GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 48 ~~~~~~~~-----~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
..++.++. +.-+++.|++|+|||..++..+..... .+.+++++.-. +...|.......+
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~---------~g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA---------AGGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh---------cCCeEEEEEcc-ccHHHHHHHHHHc
Confidence 34555554 345789999999999876665554432 24568887754 4455666555544
No 313
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.82 E-value=0.097 Score=53.83 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=36.1
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhH--hcCCcEEEEcCCCCchhHHhHHH
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVI--LSGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~--~~~~~~il~~~tG~GKT~~~~~~ 76 (444)
...+|++++-.+.+.+.|.+...+. -.++ +.+..+ ...+.+++.||+|+|||..+-..
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~--~~~~-~~~~~~g~~~~~giLL~GppGtGKT~lakal 507 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWP--LKHP-EIFEKMGIRPPKGVLLFGPPGTGKTLLAKAV 507 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhh--hhCH-HHHHhcCCCCCceEEEECCCCCCHHHHHHHH
Confidence 3567888888888888885543221 1111 122221 23456899999999999765543
No 314
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.061 Score=54.10 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=18.4
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
+-+.+.||||+|||.++...+...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhH
Confidence 346899999999998776655444
No 315
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.75 E-value=0.29 Score=45.66 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=16.6
Q ss_pred EEEEcCCCCchhHHhHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~ 79 (444)
+++.||.|+|||..+...+..
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 589999999999876664433
No 316
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.70 E-value=0.034 Score=47.99 Aligned_cols=88 Identities=19% Similarity=0.221 Sum_probs=60.4
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhc-CCCcEEEeCchHHHHHHhccCccccCC
Q 013392 91 SSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHTSSFLHTN 169 (444)
Q Consensus 91 ~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~ 169 (444)
...+.+|||+.+---+-.+.+.++.+-.... .+.-.+.--....++...+. ...+|.||||+++..++.. +.+.++.
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~~-~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKDC-KVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCCc-hHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCccc
Confidence 3467899999998888888888887631100 01111111113344444444 3588999999999999976 7777889
Q ss_pred ccEEEEechhH
Q 013392 170 LRWIIFDEADR 180 (444)
Q Consensus 170 ~~lvV~DE~h~ 180 (444)
+.+||+|--|.
T Consensus 202 l~~ivlD~s~~ 212 (252)
T PF14617_consen 202 LKRIVLDWSYL 212 (252)
T ss_pred CeEEEEcCCcc
Confidence 99999998773
No 317
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.64 E-value=0.16 Score=50.79 Aligned_cols=142 Identities=16% Similarity=0.173 Sum_probs=83.4
Q ss_pred CCCHHHHhHHHhHhcCC--cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 41 APTKVQAQAIPVILSGR--HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~--~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
....-|.+.+..++..+ -+++.|+-|-|||.++-+++...... .....+++.+|+.+-++...+.+.+-+.
T Consensus 214 ~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~-------~~~~~iiVTAP~~~nv~~Lf~fa~~~l~ 286 (758)
T COG1444 214 EDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARL-------AGSVRIIVTAPTPANVQTLFEFAGKGLE 286 (758)
T ss_pred hhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHh-------cCCceEEEeCCCHHHHHHHHHHHHHhHH
Confidence 34444555666666443 57888999999998776655333322 1134699999999999999888887766
Q ss_pred ccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhc
Q 013392 119 RFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198 (444)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~ 198 (444)
.++............. .........|=+.+|+.... .-+++|+|||=-+ ....+..++...
T Consensus 287 ~lg~~~~v~~d~~g~~---~~~~~~~~~i~y~~P~~a~~-----------~~DllvVDEAAaI----plplL~~l~~~~- 347 (758)
T COG1444 287 FLGYKRKVAPDALGEI---REVSGDGFRIEYVPPDDAQE-----------EADLLVVDEAAAI----PLPLLHKLLRRF- 347 (758)
T ss_pred HhCCccccccccccce---eeecCCceeEEeeCcchhcc-----------cCCEEEEehhhcC----ChHHHHHHHhhc-
Confidence 5542221111110000 00011122355555554431 2579999999754 345555665433
Q ss_pred CCCCCCCCCCCcccccceeEEEEEeecc
Q 013392 199 SRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (444)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~i~~Sat~~ 226 (444)
+.++||.|+.
T Consensus 348 ------------------~rv~~sTTIh 357 (758)
T COG1444 348 ------------------PRVLFSTTIH 357 (758)
T ss_pred ------------------CceEEEeeec
Confidence 5588888984
No 318
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.63 E-value=0.19 Score=49.12 Aligned_cols=22 Identities=23% Similarity=0.090 Sum_probs=17.4
Q ss_pred EEEEcCCCCchhHHhHHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~ 80 (444)
.++.||.|+|||..+...+...
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999998777655443
No 319
>PTZ00293 thymidine kinase; Provisional
Probab=95.63 E-value=0.16 Score=42.67 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
|.--++.||+++|||.-.+..+..... .+.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~---------ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTY---------SEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHH---------cCCceEEEEec
Confidence 344588999999999655554444332 35668888886
No 320
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.63 E-value=0.077 Score=51.65 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=74.5
Q ss_pred CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
.+.|.+.....+.... ..+.++++.++.+..+..+++.|++.. +..+..+|++++..+|.+.
T Consensus 7 GsGKT~v~l~~i~~~l--~~g~~vLvlvP~i~L~~Q~~~~l~~~f----------------~~~v~vlhs~~~~~er~~~ 68 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVL--ALGKSVLVLVPEIALTPQMIQRFKYRF----------------GSQVAVLHSGLSDSEKLQA 68 (505)
T ss_pred CCCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHh----------------CCcEEEEECCCCHHHHHHH
Confidence 4567777766666553 346789999999999999999887652 5678899999999999999
Q ss_pred HHHhhcCCCcEEEEecccccCCCCCCCcEEEEcc
Q 013392 379 FGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~ 412 (444)
.....+|+.+|+|+|...-. ..+++++.||.-.
T Consensus 69 ~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 69 WRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred HHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 99999999999999975432 3566888877644
No 321
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.63 E-value=0.15 Score=47.90 Aligned_cols=20 Identities=40% Similarity=0.476 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
.+.+++.||+|+|||..+-.
T Consensus 165 p~gvLL~GppGtGKT~lAka 184 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKA 184 (389)
T ss_pred CCceEEECCCCCChHHHHHH
Confidence 46799999999999976544
No 322
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.61 E-value=0.19 Score=46.04 Aligned_cols=28 Identities=36% Similarity=0.325 Sum_probs=20.7
Q ss_pred CCc-EEEEcCCCCchhHHhHHHHHHHHhc
Q 013392 56 GRH-VLVNAATGTGKTVAYLAPIINHLQS 83 (444)
Q Consensus 56 ~~~-~il~~~tG~GKT~~~~~~~~~~~~~ 83 (444)
... .++.||.|+|||..+...+-.....
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 345 8999999999998777655554433
No 323
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.56 E-value=0.065 Score=54.43 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=74.5
Q ss_pred CCCcHHHHHH-HHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHH
Q 013392 299 CGSRLAVLLS-ILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (444)
Q Consensus 299 ~~~k~~~l~~-~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 377 (444)
.+.|.....- ++... ..+.++++.++++..+...++.+++.... .+.++..++|+++..+|.+
T Consensus 292 GSGKT~va~~~il~~~---~~g~q~lilaPT~~LA~Q~~~~l~~l~~~-------------~~i~v~ll~G~~~~~~r~~ 355 (681)
T PRK10917 292 GSGKTVVAALAALAAI---EAGYQAALMAPTEILAEQHYENLKKLLEP-------------LGIRVALLTGSLKGKERRE 355 (681)
T ss_pred CCcHHHHHHHHHHHHH---HcCCeEEEEeccHHHHHHHHHHHHHHHhh-------------cCcEEEEEcCCCCHHHHHH
Confidence 3455554333 33332 34678999999999999999888765321 1578999999999999999
Q ss_pred HHHHhhcCCCcEEEEecc-cccCCCCCCCcEEEEc
Q 013392 378 TFGAFKTEKKALLLSTDV-AARGLDFPKVKCIIQY 411 (444)
Q Consensus 378 ~~~~f~~g~~~iLi~t~~-~~~G~di~~~~~vi~~ 411 (444)
+++.+.+|+.+|+|+|.. +...+.+.++.+||.-
T Consensus 356 ~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVID 390 (681)
T PRK10917 356 ILEAIASGEADIVIGTHALIQDDVEFHNLGLVIID 390 (681)
T ss_pred HHHHHhCCCCCEEEchHHHhcccchhcccceEEEe
Confidence 999999999999999985 4556778888888753
No 324
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.56 E-value=0.12 Score=47.91 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=36.3
Q ss_pred hHHHhHhc-----CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 48 QAIPVILS-----GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 48 ~~~~~~~~-----~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.-++.++. |.-+++.|++|+|||..++..+..... .+.+++++.-. +...|...+...+
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~---------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK---------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh---------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 34555553 355799999999999876665544332 23568887654 3345555554443
No 325
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.56 E-value=0.13 Score=58.21 Aligned_cols=61 Identities=33% Similarity=0.401 Sum_probs=43.4
Q ss_pred CCCHHHHhHHHhHhcC--CcEEEEcCCCCchhHHhH---HHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHH
Q 013392 41 APTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYL---APIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~--~~~il~~~tG~GKT~~~~---~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 109 (444)
.+++.|++|+..++.+ +-++|.|+.|+|||.+.. .++...+. ..+.+++.++||-.-+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~--------~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE--------SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH--------hcCCeEEEEeChHHHHHHH
Confidence 4999999999998865 456888999999997642 22333332 2355699999996655544
No 326
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.3 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=18.6
Q ss_pred cEEEEcCCCCchhHHhHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
-+++.||+|+|||.++...+...
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999887766544
No 327
>PRK05973 replicative DNA helicase; Provisional
Probab=95.55 E-value=0.057 Score=46.45 Aligned_cols=83 Identities=24% Similarity=0.308 Sum_probs=50.3
Q ss_pred ccCCCHHHHHHHHHHcCCCC----------CCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCC
Q 013392 22 SLGLHSTLCDQLRERLGFEA----------PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS 91 (444)
Q Consensus 22 ~~~l~~~i~~~l~~~~~~~~----------~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~ 91 (444)
+.++|+.+-+.. ..-||.. ++| ..+..--+..|.-++|.|++|+|||..++..+.+....
T Consensus 22 ~~~~~~~~~~~a-~~~g~~~w~~~~~~~~~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-------- 91 (237)
T PRK05973 22 NIPLHEALDRIA-AEEGFSSWSLLAAKAAATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-------- 91 (237)
T ss_pred CCcHHHHHHHHH-HHhccchHHHHHHhccCCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--------
Confidence 344555555555 3347763 222 11222233355668999999999999888766665533
Q ss_pred CCceEEEEeccHHHHHHHHHHHHHH
Q 013392 92 SGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 92 ~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
+.+++|+.-- +-..|..+++..+
T Consensus 92 -Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 92 -GRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred -CCeEEEEEEe-CCHHHHHHHHHHc
Confidence 4557777643 4456677777665
No 328
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.53 E-value=0.16 Score=48.08 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=17.8
Q ss_pred cEEEEcCCCCchhHHhHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~ 79 (444)
.++++|++|+|||.++...+..
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4688999999999887766544
No 329
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.50 E-value=0.4 Score=42.33 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=18.0
Q ss_pred CcEEEEcCCCCchhHHhHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
..+.+.|++|+|||..+...+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 56799999999999876655444
No 330
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.50 E-value=0.3 Score=48.28 Aligned_cols=24 Identities=21% Similarity=0.072 Sum_probs=18.7
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
.+|+.||.|+|||.++.+.+....
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcc
Confidence 478999999999988776554443
No 331
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.50 E-value=0.12 Score=47.59 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=19.3
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
++.+++.||+|+|||.++...+...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999998776665443
No 332
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.50 E-value=0.11 Score=52.70 Aligned_cols=96 Identities=13% Similarity=0.161 Sum_probs=75.9
Q ss_pred CCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHH
Q 013392 298 PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (444)
Q Consensus 298 ~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 377 (444)
..+.|.......+.... ..+.+++|.++++..+..+.+.+++.. +..+..+||+++..+|.+
T Consensus 171 TGSGKT~v~l~~i~~~l--~~g~~vLvLvPt~~L~~Q~~~~l~~~f----------------g~~v~~~~s~~s~~~r~~ 232 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVL--AQGKQALVLVPEIALTPQMLARFRARF----------------GAPVAVLHSGLSDGERLD 232 (679)
T ss_pred CCChHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHh----------------CCCEEEEECCCCHHHHHH
Confidence 34568877777666554 336789999999999999999887642 667899999999999999
Q ss_pred HHHHhhcCCCcEEEEecccccCCCCCCCcEEEEcc
Q 013392 378 TFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (444)
Q Consensus 378 ~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~ 412 (444)
...+...|+.+|+|+|..... ..+.+++.||.-.
T Consensus 233 ~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 233 EWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred HHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 999999999999999974322 4566788877654
No 333
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.49 E-value=0.34 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=18.1
Q ss_pred EEEEcCCCCchhHHhHHHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
.++.||.|+|||.++...+....
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhh
Confidence 58999999999988776554443
No 334
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.47 E-value=0.2 Score=46.99 Aligned_cols=57 Identities=26% Similarity=0.354 Sum_probs=35.2
Q ss_pred ccCCccccCCCHHHHHHHHHHcC--CCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHH
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLG--FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
-..+|++.+-.+...+.+.+... +..+..++.-. +...+.+++.||+|+|||..+-.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LAka 198 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLAKA 198 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHHHH
Confidence 34678888777777777754432 22222222211 12457899999999999986543
No 335
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.47 E-value=0.046 Score=45.84 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCchhHHhHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~ 77 (444)
-+.++.||+|+|||.+....+
T Consensus 49 P~liisGpPG~GKTTsi~~LA 69 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLA 69 (333)
T ss_pred CceEeeCCCCCchhhHHHHHH
Confidence 468999999999998766543
No 336
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.46 E-value=0.1 Score=48.17 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=32.3
Q ss_pred CccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchh
Q 013392 169 NLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK 228 (444)
Q Consensus 169 ~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~ 228 (444)
...+|.|||+| +-+.+....+..++..+-.. ...+++.|.++|..
T Consensus 127 ~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~--------------gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 127 ESRLLCFDEFQ-VTDIADAMILKRLFEALFKR--------------GVVLVATSNRPPED 171 (362)
T ss_pred cCCEEEEeeee-ccchhHHHHHHHHHHHHHHC--------------CCEEEecCCCChHH
Confidence 56799999999 56655566666677666543 66778888887664
No 337
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.46 E-value=0.23 Score=48.64 Aligned_cols=23 Identities=22% Similarity=0.145 Sum_probs=17.6
Q ss_pred cEEEEcCCCCchhHHhHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
-.++.||.|+|||..+...+...
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35899999999998776654443
No 338
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.45 E-value=0.04 Score=49.71 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=35.9
Q ss_pred hHHHhHhc------CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHH
Q 013392 48 QAIPVILS------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (444)
Q Consensus 48 ~~~~~~~~------~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q 108 (444)
..++.++. |+-+.+.||+|+|||..++..+.+.... +.+++|+-+-..+-.+
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~---------g~~~vyId~E~~~~~~ 98 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL---------GGTVAFIDAEHALDPV 98 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCCEEEECccccHHHH
Confidence 34555554 4567899999999998887766665433 4568888876555543
No 339
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.44 E-value=0.041 Score=49.19 Aligned_cols=61 Identities=25% Similarity=0.333 Sum_probs=43.2
Q ss_pred CCCCCCHHHHhHHHhHhcCC-cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHH
Q 013392 38 GFEAPTKVQAQAIPVILSGR-HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~-~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q 108 (444)
.|..+++-|...+..+...+ +++++|.||||||. .+.++...+ . ...+++.+=.+.+|.-+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT-lLNal~~~i-~--------~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-LLNALSGFI-D--------SDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-HHHHHHhcC-C--------CcccEEEEeehhhhccC
Confidence 66678999999888877665 99999999999995 333333333 2 23368888777665443
No 340
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.43 E-value=0.19 Score=46.81 Aligned_cols=48 Identities=25% Similarity=0.412 Sum_probs=30.8
Q ss_pred HHHHHHcCCCCCCHHHH----h----HHHhHhcCCcEEEEcCCCCchhHHhHHHHHH
Q 013392 31 DQLRERLGFEAPTKVQA----Q----AIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 31 ~~l~~~~~~~~~~~~Q~----~----~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
+.|...+|++ |..+.. . .++.+..+.|+++.||+|+|||..+.....+
T Consensus 177 d~LlrSiG~~-P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 177 DVLIRSIGYE-PEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHHHhcCCC-cccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 3444667887 443321 1 1144457889999999999999766643333
No 341
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.38 E-value=0.22 Score=50.99 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=16.7
Q ss_pred EEEEcCCCCchhHHhHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~ 79 (444)
.++.||.|+|||..+.+.+..
T Consensus 41 yLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 489999999999877664433
No 342
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.34 E-value=0.52 Score=44.44 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=23.1
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEec
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 101 (444)
+.++|++|+|||.++...+.... . .+.+++++.-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~-~--------~G~kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQ-R--------KGFKPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-H--------CCCCEEEEcC
Confidence 68999999999987766554432 2 2445666654
No 343
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.34 E-value=0.38 Score=47.78 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=18.1
Q ss_pred EEEEcCCCCchhHHhHHHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
++++||.|+|||..+.+.+....
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 59999999999988776554443
No 344
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.33 E-value=0.29 Score=42.36 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=32.4
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.|..+++.|++|+|||..+...+.+.+.. +..++++.- .....+..+.++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---------g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---------GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---------CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 45678999999999998776555544422 345777764 23344544444443
No 345
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.31 E-value=0.043 Score=49.48 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=29.9
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~ 107 (444)
|+-+.+.||+|+|||..++..+.+.... +.+++|+-.-..+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~---------g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA---------GGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCcEEEEcccchhHH
Confidence 3567899999999998877766665432 455787765544444
No 346
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.30 E-value=0.65 Score=45.93 Aligned_cols=51 Identities=18% Similarity=0.142 Sum_probs=29.9
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHH
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
-..+|+++-=++.+.+.|+..+.-. .-++-.+++||.|+|||.++-..+..
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~-------------~~~hayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQG-------------KISHAYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445666555555555553332111 01234688999999999877665444
No 347
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.27 E-value=0.29 Score=42.22 Aligned_cols=53 Identities=26% Similarity=0.313 Sum_probs=35.1
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.|.-+++.|++|+|||..++..+.+.+.. .+.++++++-. +-..++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~--------~ge~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN--------FGEKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH--------HT--EEEEESS-S-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh--------cCCcEEEEEec-CCHHHHHHHHHHc
Confidence 34678999999999999887766666544 13448887743 4446666666654
No 348
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.27 E-value=0.073 Score=46.95 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=27.6
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEec
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 101 (444)
.+.-+++.|++|+|||..++..+.+.+.. +.+++++.-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~---------Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR---------GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC---------CCcEEEEEe
Confidence 34567999999999998877766654432 455888773
No 349
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.27 E-value=0.36 Score=47.46 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=18.9
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
+..++.||.|+|||..|...+....
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3478999999999987776554443
No 350
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.26 E-value=0.33 Score=42.15 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=37.8
Q ss_pred HHHhHhc-----CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 49 AIPVILS-----GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 49 ~~~~~~~-----~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.++.++. +.-+++.|++|+|||..+...+...+.+ +.+++++.-. .-..+..+.+..+
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---------g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ---------GKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC---------CCEEEEEEcC-CCHHHHHHHHHHC
Confidence 4555553 4567999999999998777665554432 5568887754 3345566666554
No 351
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.25 E-value=0.058 Score=48.80 Aligned_cols=57 Identities=25% Similarity=0.353 Sum_probs=37.4
Q ss_pred CCHHHHhHHHhHh-cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHH
Q 013392 42 PTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (444)
Q Consensus 42 ~~~~Q~~~~~~~~-~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L 105 (444)
+.+.|.+.+..+. .+.+++++|+||||||.. +.+++..+... ....+++.+=...+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~------~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS------APEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC------CCCceEEEecCCccc
Confidence 6677877766655 567899999999999964 45555544321 123456666666565
No 352
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.24 E-value=0.28 Score=48.91 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=18.6
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
+.+++.||.|+|||..+...+...
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 357999999999998777655443
No 353
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.24 E-value=0.52 Score=42.15 Aligned_cols=59 Identities=20% Similarity=0.167 Sum_probs=34.8
Q ss_pred HHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeec
Q 013392 154 RLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATL 225 (444)
Q Consensus 154 ~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~ 225 (444)
.++..+.+..... +.--..|+||+|.+......-.+.+++..-..... +.-++++|.-.
T Consensus 123 ~lL~~L~~~~~~t-~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~------------Piciig~Ttrl 181 (408)
T KOG2228|consen 123 KLLEALKKGDETT-SGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARA------------PICIIGVTTRL 181 (408)
T ss_pred HHHHHHhcCCCCC-CceEEEEeehhhccccchhhHHHHHHHHHHhhcCC------------CeEEEEeeccc
Confidence 4455555422222 22237889999977766666677777766553221 66777776543
No 354
>PRK09354 recA recombinase A; Provisional
Probab=95.16 E-value=0.073 Score=48.53 Aligned_cols=51 Identities=25% Similarity=0.290 Sum_probs=35.5
Q ss_pred hHHHhHhc------CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHH
Q 013392 48 QAIPVILS------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (444)
Q Consensus 48 ~~~~~~~~------~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~ 107 (444)
..++.++. |+-+.+.||+|+|||..++..+.+.... +.+++|+-.-.++-.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~---------G~~~~yId~E~s~~~ 102 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA---------GGTAAFIDAEHALDP 102 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCcEEEECCccchHH
Confidence 34555555 3457899999999999888776665432 556888876655554
No 355
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.16 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=18.1
Q ss_pred cEEEEcCCCCchhHHhHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
-+++.||.|+|||..+.+.+...
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46999999999998777655443
No 356
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.42 Score=47.75 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=34.3
Q ss_pred hhccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 12 KEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 12 ~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
.+-+....|+++--++.+.+.|.....-. .-...+++.||.|+|||..+...+....
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~~-------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALISN-------------RIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHcC-------------CCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 34455566666666666666653322111 0123579999999999987776554443
No 357
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.12 E-value=0.3 Score=44.51 Aligned_cols=40 Identities=18% Similarity=0.018 Sum_probs=29.7
Q ss_pred CCHHHHhHHHhHhcC-----CcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 42 PTKVQAQAIPVILSG-----RHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~-----~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
++|||+..+..+... +..++.||.|.|||..+...+...+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 468888888887732 2478999999999987776554444
No 358
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.11 E-value=0.37 Score=45.08 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=17.9
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
.++++.||+|+|||.++-. ++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~~~-~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKY-VMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHHHH-HHHHH
Confidence 5799999999999976544 44444
No 359
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.54 Score=42.42 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=37.0
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHh--cCCcEEEEcCCCCchhHHhHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~il~~~tG~GKT~~~~~ 75 (444)
.-..+|++.|=-+..++.++..- + +--.+-+.++.+- .-+.+++.||+|+|||+.|=.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~V--E-LPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkA 204 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVV--E-LPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKA 204 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHh--c-ccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHH
Confidence 34567777776666666665442 1 3333445555433 347899999999999986543
No 360
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.07 E-value=0.062 Score=48.74 Aligned_cols=57 Identities=30% Similarity=0.395 Sum_probs=37.4
Q ss_pred CCHHHHhHHHhHh-cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHH
Q 013392 42 PTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (444)
Q Consensus 42 ~~~~Q~~~~~~~~-~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L 105 (444)
+.+.|.+.+..+. .+++++++|+||+|||. .+.+++..+... ....+++.+-.+.++
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~------~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ------DPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc------CCCceEEEEcCCCcc
Confidence 5677888776544 67889999999999994 455555443211 123456766666554
No 361
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.04 E-value=0.086 Score=47.36 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.1
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
.+|++||+|+|||..+-+
T Consensus 164 SmIlWGppG~GKTtlArl 181 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARL 181 (554)
T ss_pred ceEEecCCCCchHHHHHH
Confidence 589999999999976544
No 362
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.04 E-value=0.13 Score=48.39 Aligned_cols=34 Identities=15% Similarity=0.305 Sum_probs=27.6
Q ss_pred CCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHH
Q 013392 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
+.......+..+..++++++.||+|+|||..+-.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 4555666777777899999999999999987654
No 363
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.02 E-value=0.35 Score=47.73 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=18.0
Q ss_pred EEEEcCCCCchhHHhHHHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
.++.||.|+|||.++.+.+....
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999988776554433
No 364
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.97 E-value=0.49 Score=43.70 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=18.1
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
-.++.||.|.|||..+...+...+
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHc
Confidence 489999999999987665444433
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.97 E-value=0.95 Score=40.17 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=24.1
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
+-+++.|++|+|||.++...+.... . .+.+++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~-~--------~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLK-K--------QGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH-h--------cCCEEEEEe
Confidence 3467889999999988777665443 2 245566665
No 366
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.96 E-value=0.49 Score=44.55 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
++-+.+.||||+|||.+....+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 455899999999999876554443
No 367
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.93 E-value=0.49 Score=47.66 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=17.2
Q ss_pred cEEEEcCCCCchhHHhHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~ 79 (444)
-.++.||.|+|||.++...+..
T Consensus 42 AYLF~GP~GtGKTt~AriLAk~ 63 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFANA 63 (725)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3689999999999877665433
No 368
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.91 E-value=0.12 Score=51.99 Aligned_cols=97 Identities=16% Similarity=0.256 Sum_probs=73.9
Q ss_pred CCCcHHHHH-HHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHH
Q 013392 299 CGSRLAVLL-SILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (444)
Q Consensus 299 ~~~k~~~l~-~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 377 (444)
.+.|..... .++... ..+.++++.++++..+..+++.+++.... .+.++..++|+++..+|..
T Consensus 266 GSGKT~va~l~il~~~---~~g~qvlilaPT~~LA~Q~~~~~~~l~~~-------------~gi~v~lltg~~~~~~r~~ 329 (630)
T TIGR00643 266 GSGKTLVAALAMLAAI---EAGYQVALMAPTEILAEQHYNSLRNLLAP-------------LGIEVALLTGSLKGKRRKE 329 (630)
T ss_pred CCcHHHHHHHHHHHHH---HcCCcEEEECCHHHHHHHHHHHHHHHhcc-------------cCcEEEEEecCCCHHHHHH
Confidence 344555433 333332 34678999999999999999888765321 1678999999999999999
Q ss_pred HHHHhhcCCCcEEEEeccc-ccCCCCCCCcEEEEc
Q 013392 378 TFGAFKTEKKALLLSTDVA-ARGLDFPKVKCIIQY 411 (444)
Q Consensus 378 ~~~~f~~g~~~iLi~t~~~-~~G~di~~~~~vi~~ 411 (444)
.++...+|+.+|+|+|..+ ...+++.++.+||.-
T Consensus 330 ~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVID 364 (630)
T TIGR00643 330 LLETIASGQIHLVVGTHALIQEKVEFKRLALVIID 364 (630)
T ss_pred HHHHHhCCCCCEEEecHHHHhccccccccceEEEe
Confidence 9999999999999999864 456778888888753
No 369
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.88 E-value=0.59 Score=43.41 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=19.5
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhc
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQS 83 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~ 83 (444)
-.++.||.|.||+..+...+...+..
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 47999999999998776655554433
No 370
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=94.84 E-value=0.53 Score=44.12 Aligned_cols=106 Identities=19% Similarity=0.174 Sum_probs=47.0
Q ss_pred EEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHH-H---HHHHHHHhcccCceeeEEEeCCcchh
Q 013392 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ-V---YEILHKLLHRFHWIVPGYVMGGENRS 135 (444)
Q Consensus 60 il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q-~---~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (444)
++.++.|+|||......++..+...+ +...+++. |+..-+.+ . ...+.....................
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~------~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP------PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS------S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC------CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE-
Confidence 57889999999998887777776621 12445555 55444444 2 2233333332111111100011000
Q ss_pred HHHHHhcCCCcEEEeCchH--HHHHHhccCccccCCccEEEEechhHhhhc
Q 013392 136 KEKARLRKGISILVATPGR--LLDHLKHTSSFLHTNLRWIIFDEADRILEL 184 (444)
Q Consensus 136 ~~~~~~~~~~~iii~T~~~--l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~ 184 (444)
+.++..|.+.+.+. -...+. ...++++++||+-.+.+.
T Consensus 73 -----~~nG~~i~~~~~~~~~~~~~~~------G~~~~~i~iDE~~~~~~~ 112 (384)
T PF03237_consen 73 -----LPNGSRIQFRGADSPDSGDNIR------GFEYDLIIIDEAAKVPDD 112 (384)
T ss_dssp -----ETTS-EEEEES-----SHHHHH------TS--SEEEEESGGGSTTH
T ss_pred -----ecCceEEEEecccccccccccc------ccccceeeeeecccCchH
Confidence 03445566666332 122222 147889999998765443
No 371
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.84 E-value=2.1 Score=38.57 Aligned_cols=137 Identities=20% Similarity=0.218 Sum_probs=73.7
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (444)
++++|..|+|||.+..-.+.+... .+.+|++.+-. .--.-..++++.|..+.+...+..-.+++...
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~---------~g~~VllaA~D-TFRAaAiEQL~~w~er~gv~vI~~~~G~DpAa--- 208 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQ---------QGKSVLLAAGD-TFRAAAIEQLEVWGERLGVPVISGKEGADPAA--- 208 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHH---------CCCeEEEEecc-hHHHHHHHHHHHHHHHhCCeEEccCCCCCcHH---
Confidence 578899999999877665554442 35666665532 23333345566666655433222112221111
Q ss_pred HHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhc-chhHHHHHHHHHhcCCCCCCCCCCCccccccee
Q 013392 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQ 217 (444)
Q Consensus 139 ~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 217 (444)
..++.++.. ..+++++|++|=+-++-.. .....+.++.+-+.+.. ...+..
T Consensus 209 ---------------VafDAi~~A---kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~----------~~ap~e 260 (340)
T COG0552 209 ---------------VAFDAIQAA---KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDD----------PDAPHE 260 (340)
T ss_pred ---------------HHHHHHHHH---HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhcccc----------CCCCce
Confidence 122222221 1247889999999887654 34566666666655421 111333
Q ss_pred EEE-EEeecchhhHHHHHhh
Q 013392 218 NLL-LSATLNEKVNHLAKIS 236 (444)
Q Consensus 218 ~i~-~Sat~~~~~~~~~~~~ 236 (444)
+++ +=||.....-.-.+.+
T Consensus 261 ~llvlDAttGqnal~QAk~F 280 (340)
T COG0552 261 ILLVLDATTGQNALSQAKIF 280 (340)
T ss_pred EEEEEEcccChhHHHHHHHH
Confidence 444 4788776555544433
No 372
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.83 E-value=0.016 Score=47.69 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=29.2
Q ss_pred HHhcCCCcEEEeCchHHHHHHhccCcc-ccCCccEEEEechhHhhh
Q 013392 139 ARLRKGISILVATPGRLLDHLKHTSSF-LHTNLRWIIFDEADRILE 183 (444)
Q Consensus 139 ~~~~~~~~iii~T~~~l~~~l~~~~~~-~~~~~~lvV~DE~h~~~~ 183 (444)
+.....++|+|+++..|++........ ...+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 444556899999999988754331221 112446999999998755
No 373
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.80 E-value=0.25 Score=47.99 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=16.6
Q ss_pred EEEEcCCCCchhHHhHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~ 79 (444)
+++.||+|+|||..+...+..
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 599999999999877654433
No 374
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.76 E-value=0.42 Score=44.63 Aligned_cols=20 Identities=40% Similarity=0.476 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
.+.+++.||+|+|||..+-.
T Consensus 156 p~gvLL~GppGtGKT~laka 175 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKA 175 (364)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45699999999999976544
No 375
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=1.2 Score=44.21 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=17.2
Q ss_pred cEEEEcCCCCchhHHhHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~ 79 (444)
-.++.||.|+|||.++...+..
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3589999999999877664444
No 376
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.69 E-value=0.21 Score=41.20 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=29.8
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
....+.+..++|.|||.+++-.++..+- .+.+|+++==-
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g---------~G~~V~ivQFl 59 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG---------HGKKVGVVQFI 59 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH---------CCCeEEEEEEe
Confidence 4567899999999999988877777663 36667776543
No 377
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.67 E-value=0.27 Score=42.96 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=29.0
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEec
Q 013392 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (444)
Q Consensus 54 ~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 101 (444)
..|.-++|.|++|+|||..++..+.+.+.. .+..++++..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--------~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK--------QGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCceEEEeC
Confidence 356678999999999998777666665543 1455888873
No 378
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=0.38 Score=47.99 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=17.3
Q ss_pred cEEEEcCCCCchhHHhHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~ 79 (444)
..++.||.|+|||..+...+..
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~ 61 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKA 61 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999877665433
No 379
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.66 E-value=0.39 Score=38.46 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=24.4
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
+.+..++|.|||.+++-.++..+.. +.+|+++-
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~---------g~~v~~vQ 37 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGH---------GYRVGVVQ 37 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEE
Confidence 4666788999999888777776633 66787743
No 380
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.63 E-value=0.06 Score=49.28 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=27.8
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHH
Q 013392 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (444)
Q Consensus 54 ~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L 105 (444)
..+++++++|+||||||.. +.+++..+- ...+++.+-++.++
T Consensus 160 ~~~~nilI~G~tGSGKTTl-l~aLl~~i~---------~~~rivtiEd~~El 201 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTM-SKTLISAIP---------PQERLITIEDTLEL 201 (344)
T ss_pred HcCCeEEEECCCCccHHHH-HHHHHcccC---------CCCCEEEECCCccc
Confidence 3678999999999999953 444444331 23346666666555
No 381
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.62 E-value=0.32 Score=47.57 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=34.4
Q ss_pred cccCCccccCCCHHHHHHHHHHcCC-CCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGF-EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~-~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
....+|+++.-.+...+.+.+-..+ ..+..++... ....+.+++.||+|+|||..+-.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~a 107 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLAKA 107 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHHHH
Confidence 3467888887777777666433221 1122222211 12235799999999999986544
No 382
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.61 E-value=0.52 Score=44.24 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=18.9
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
+.+++.||.|+|||..+...+....
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3579999999999987766544433
No 383
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.57 E-value=0.9 Score=42.51 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCchhHHhHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~ 76 (444)
+.+++.||+|+|||..+...
T Consensus 40 ~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35789999999999766544
No 384
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=94.55 E-value=0.084 Score=51.92 Aligned_cols=72 Identities=22% Similarity=0.082 Sum_probs=56.7
Q ss_pred CCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
.+-.-|+.|+...+..+-.+++||+|+|||++.+.++-..+....-- .....++++|-|...+.|.-..+-.
T Consensus 378 ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~---~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGY---TEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhccccc---ccccceeeeehhhHHHHHHHHHHHh
Confidence 35566999999999999999999999999999998887777653221 1234589999999999988776654
No 385
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.53 E-value=0.31 Score=45.73 Aligned_cols=143 Identities=12% Similarity=0.090 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHH
Q 013392 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (444)
Q Consensus 28 ~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~ 107 (444)
.+++.+.++ +..+-..|.++.-..-.|+- -+.|=.|||||...+.-+...-.. ++..+++|-+-|+.|..
T Consensus 151 a~l~~iesk--IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~k-------nPd~~I~~Tfftk~L~s 220 (660)
T COG3972 151 ALLDTIESK--IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSK-------NPDSRIAFTFFTKILAS 220 (660)
T ss_pred HHHHHHHHH--HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcC-------CCCceEEEEeehHHHHH
Confidence 355566333 33466667665433333433 677889999997654433332222 34567999999999999
Q ss_pred HHHHHHHHHhc-------ccCceeeEEEeCCcchhH---HHHHhcCCCcEEEeCc-----hHHHHHHhccCccccCCccE
Q 013392 108 QVYEILHKLLH-------RFHWIVPGYVMGGENRSK---EKARLRKGISILVATP-----GRLLDHLKHTSSFLHTNLRW 172 (444)
Q Consensus 108 q~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iii~T~-----~~l~~~l~~~~~~~~~~~~l 172 (444)
++.....+++- +++....+.-.+|..... ......+-..+-++-- .....++...+. ..-+++
T Consensus 221 ~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~--~~~yD~ 298 (660)
T COG3972 221 TMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINN--KKAYDY 298 (660)
T ss_pred HHHHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhc--cccccE
Confidence 99988888762 233233333333332221 1222222222222211 112233332222 356899
Q ss_pred EEEechhHhh
Q 013392 173 IIFDEADRIL 182 (444)
Q Consensus 173 vV~DE~h~~~ 182 (444)
|.+||.+.+.
T Consensus 299 ilIDE~QDFP 308 (660)
T COG3972 299 ILIDESQDFP 308 (660)
T ss_pred EEecccccCC
Confidence 9999999743
No 386
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.46 E-value=0.8 Score=44.38 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=16.3
Q ss_pred EEEEcCCCCchhHHhHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~ 79 (444)
.++.||.|+|||.++.+.+..
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~ 61 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKV 61 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999877664443
No 387
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.45 E-value=0.46 Score=45.58 Aligned_cols=89 Identities=17% Similarity=0.076 Sum_probs=43.6
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe-ccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchh
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV-PTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS 135 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~-P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (444)
+-+.+.||||+|||.+....+...... .+..++.++. .+.- .-..+.++.|....+... ..........
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~-------~G~~kV~LI~~Dt~R--igA~EQLr~~AeilGVpv-~~~~~~~Dl~ 326 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMR-------HGASKVALLTTDSYR--IGGHEQLRIYGKILGVPV-HAVKDAADLR 326 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHh-------cCCCeEEEEeCCccc--hhHHHHHHHHHHHhCCCe-eccCCchhHH
Confidence 447899999999998877665444333 1122354433 2211 112344444444333211 1122222222
Q ss_pred HHHHHhcCCCcEEEeCchHH
Q 013392 136 KEKARLRKGISILVATPGRL 155 (444)
Q Consensus 136 ~~~~~~~~~~~iii~T~~~l 155 (444)
.....+.....++|-|+.+.
T Consensus 327 ~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 327 LALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HHHHhccCCCeEEeCCCCcC
Confidence 23334444456888888743
No 388
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.44 E-value=0.71 Score=43.65 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=18.4
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
..+++||.|+|||.++...+....
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 378999999999988776544433
No 389
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.42 E-value=0.41 Score=38.88 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=24.5
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEE
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil 99 (444)
+.+..++|.|||.+++-.++..+- .+.+|+++
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~~---------~g~~v~iv 39 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRALG---------HGKKVGVI 39 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHHH---------CCCeEEEE
Confidence 577788999999988877777663 36667766
No 390
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.42 E-value=0.15 Score=45.93 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=35.9
Q ss_pred CCHHHHhHHHhHh-cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHH
Q 013392 42 PTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (444)
Q Consensus 42 ~~~~Q~~~~~~~~-~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L 105 (444)
+.+.|.+.+..+. .+++++++|+||+|||.. +.+++..+... ....+++.+-...++
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~------~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN------DPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc------CCCceEEEECCchhh
Confidence 4555666555544 567899999999999964 44455544321 123457777666665
No 391
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.41 E-value=0.15 Score=47.03 Aligned_cols=62 Identities=24% Similarity=0.261 Sum_probs=35.9
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCC--CCHHHHhHHHhHh---cCCcEEEEcCCCCchhHHhHHHHHHHHh
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEA--PTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPIINHLQ 82 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~--~~~~Q~~~~~~~~---~~~~~il~~~tG~GKT~~~~~~~~~~~~ 82 (444)
-....|+++-......+. .+.. +.+.=..+++.+. .|+..+|.||.|+|||..+ ..+...+.
T Consensus 128 ~~r~~f~~l~p~~p~~R~-----~le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLa-K~Ian~I~ 194 (416)
T PRK09376 128 RNRPLFENLTPLYPNERL-----RLETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLL-QNIANSIT 194 (416)
T ss_pred cCCCCcccCCCCChhhcc-----cccCCCCcccceeeeeeecccccCceEEEeCCCCCChhHHH-HHHHHHHH
Confidence 345666666544433222 2322 2344445555544 7889999999999999543 33444443
No 392
>COG1485 Predicted ATPase [General function prediction only]
Probab=94.40 E-value=0.41 Score=43.16 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=33.9
Q ss_pred CccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhh
Q 013392 169 NLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKV 229 (444)
Q Consensus 169 ~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~ 229 (444)
+.+++.|||+| +.+-+..-.+..+++.+-.. ...++..|.|.|+..
T Consensus 130 ~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~--------------GV~lvaTSN~~P~~L 175 (367)
T COG1485 130 ETRVLCFDEFE-VTDIADAMILGRLLEALFAR--------------GVVLVATSNTAPDNL 175 (367)
T ss_pred cCCEEEeeeee-ecChHHHHHHHHHHHHHHHC--------------CcEEEEeCCCChHHh
Confidence 67899999999 56655556666777766553 778888898887643
No 393
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.38 E-value=0.12 Score=45.64 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=26.1
Q ss_pred CCHHHHhHHHhHhc--CCcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 42 PTKVQAQAIPVILS--GRHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~--~~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
+.+.|.+.+..+.. +..+++.|+||+|||... .+++..+
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 35667777766653 335799999999999643 4444444
No 394
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.37 E-value=0.44 Score=42.32 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=23.5
Q ss_pred CCHHHHhHHHhHh----cCC-cEEEEcCCCCchhHHhHH
Q 013392 42 PTKVQAQAIPVIL----SGR-HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 42 ~~~~Q~~~~~~~~----~~~-~~il~~~tG~GKT~~~~~ 75 (444)
+.+.+.+++..+. .+. .+++.||+|+|||..+-.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 5666666666553 223 578999999999975543
No 395
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.37 E-value=0.018 Score=61.87 Aligned_cols=96 Identities=18% Similarity=0.259 Sum_probs=77.1
Q ss_pred ceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCC-----------CHHHHHHHHHHhhcCCCc
Q 013392 320 QKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNM-----------KQEDRRTTFGAFKTEKKA 388 (444)
Q Consensus 320 ~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~r~~~~~~f~~g~~~ 388 (444)
-..++|++....+....+++++.... .+..+.|.+ ....+.+++..|.....+
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln 356 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSN----------------DPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELN 356 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhcc----------------CcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhh
Confidence 47799999999999998888775432 122233322 122356788889999999
Q ss_pred EEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCC
Q 013392 389 LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVG 431 (444)
Q Consensus 389 iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 431 (444)
+|++|.++.+|+|++.++.|+.++.|...+.|+|..||+-+.+
T Consensus 357 ~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 357 LLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred HHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999999999999999999999987754
No 396
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.33 E-value=0.095 Score=45.58 Aligned_cols=53 Identities=25% Similarity=0.249 Sum_probs=37.5
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
.|..+++.|++|+|||..++..+.+.+.. +.++++++- .+-..|..+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~---------ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---------GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---------CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 34678999999999999887766665533 555888774 355666666666543
No 397
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.24 E-value=1.2 Score=41.56 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=15.6
Q ss_pred cEEEEcCCCCchhHHhHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~ 77 (444)
..++.||.|+|||..+...+
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la 57 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFA 57 (355)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999997655433
No 398
>PRK06904 replicative DNA helicase; Validated
Probab=94.23 E-value=0.56 Score=45.29 Aligned_cols=117 Identities=16% Similarity=0.148 Sum_probs=61.2
Q ss_pred HhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCC-
Q 013392 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGG- 131 (444)
Q Consensus 53 ~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~- 131 (444)
+..|.=+++.|.||.|||..++..+.+.... .+..|+|+. ...-..|+..++-......... .+..+
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~--------~g~~Vl~fS-lEMs~~ql~~Rlla~~s~v~~~---~i~~g~ 285 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMA--------SEKPVLVFS-LEMPAEQIMMRMLASLSRVDQT---KIRTGQ 285 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--------cCCeEEEEe-ccCCHHHHHHHHHHhhCCCCHH---HhccCC
Confidence 3345557889999999998776655544432 133466654 4466777776655543221111 11112
Q ss_pred cchhHHH-------HHhcCCCcEEEe-----CchHHHHHHhccCccccCCccEEEEechhHhh
Q 013392 132 ENRSKEK-------ARLRKGISILVA-----TPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 132 ~~~~~~~-------~~~~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~ 182 (444)
.-..+++ ..+.....+.|- |++.+.....+... ....+++||+|=.+.+.
T Consensus 286 ~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 286 NLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYR-ENGGLSLIMVDYLQLMR 347 (472)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEecHHhcC
Confidence 1112222 122233446662 44555443332111 11257899999999764
No 399
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.22 E-value=1 Score=46.18 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCchhHHhHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~ 77 (444)
..++++.||+|+|||..+-..+
T Consensus 207 ~~n~LLvGppGvGKT~lae~la 228 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 3589999999999998755433
No 400
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.19 E-value=0.91 Score=41.48 Aligned_cols=18 Identities=56% Similarity=0.750 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
.+++.||+|+|||..+..
T Consensus 40 ~~ll~G~~G~GKt~~~~~ 57 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALA 57 (319)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999976554
No 401
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.18 E-value=1 Score=43.30 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=32.7
Q ss_pred ccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHH
Q 013392 14 IFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 14 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
-+...+|+++--++.+.+.|.......+ -.+..++.||.|+|||..+...+...
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~~~-------------i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRFNR-------------AAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCC-------------CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3556677776666666655533321110 11347899999999998776654443
No 402
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.17 E-value=0.29 Score=41.95 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=29.6
Q ss_pred HHHhHhc-----CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 49 AIPVILS-----GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 49 ~~~~~~~-----~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
.++.++. |.-+.+.|++|+|||..++..+..... .+.+++++.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~---------~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG---------QGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh---------cCCeEEEEE
Confidence 4555553 455789999999999887776655442 245588874
No 403
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.54 Score=44.70 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.1
Q ss_pred CCccEEEEechhHhhhcc
Q 013392 168 TNLRWIIFDEADRILELG 185 (444)
Q Consensus 168 ~~~~lvV~DE~h~~~~~~ 185 (444)
+.++.||+|+..+++++.
T Consensus 597 S~lsiivvDdiErLiD~v 614 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYV 614 (744)
T ss_pred CcceEEEEcchhhhhccc
Confidence 367899999999998863
No 404
>CHL00176 ftsH cell division protein; Validated
Probab=94.11 E-value=0.7 Score=46.31 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=32.2
Q ss_pred ccCCccccCCCHHHHHHHHHHcCC-CCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHH
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGF-EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~-~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~ 76 (444)
...+|+++.-.++..+.+.+-..+ ..+..++.-. ....+.+++.||+|+|||..+-..
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g---~~~p~gVLL~GPpGTGKT~LAral 236 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVG---AKIPKGVLLVGPPGTGKTLLAKAI 236 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhcc---CCCCceEEEECCCCCCHHHHHHHH
Confidence 356777776656666665333221 1111111111 112457999999999999865543
No 405
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.09 E-value=0.087 Score=48.13 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=20.0
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
.+++++++|+||||||. ++.+++..+
T Consensus 159 ~~~nili~G~tgSGKTT-ll~aL~~~i 184 (332)
T PRK13900 159 SKKNIIISGGTSTGKTT-FTNAALREI 184 (332)
T ss_pred cCCcEEEECCCCCCHHH-HHHHHHhhC
Confidence 67899999999999995 445555544
No 406
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.07 E-value=0.5 Score=41.96 Aligned_cols=76 Identities=17% Similarity=0.082 Sum_probs=41.6
Q ss_pred HHHhHHHhHh-cCCcEEEEcCCCCchhHHhHHHHHHHHhccC-CCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccC
Q 013392 45 VQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYS-PRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (444)
Q Consensus 45 ~Q~~~~~~~~-~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~-~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~ 121 (444)
.|-+.|+.++ ++..+|+.|+.|.|||+..+...+....-.. -...-....+||+|.-- .--....++++.....++
T Consensus 77 ~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslE-l~re~~L~Rl~~v~a~mg 154 (402)
T COG3598 77 NSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLE-LYREDILERLEPVRARMG 154 (402)
T ss_pred cChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEec-cChHHHHHHHHHHHHHcC
Confidence 3556666555 5566788899999999987776665543211 01011234567776532 222333445555544433
No 407
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.04 E-value=0.24 Score=45.96 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 013392 55 SGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~ 73 (444)
.|+.+.+.||+|+|||..+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred CCCEEEEECCCCCChhHHH
Confidence 6788999999999999643
No 408
>PRK10867 signal recognition particle protein; Provisional
Probab=94.03 E-value=1.2 Score=42.37 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=18.4
Q ss_pred EEEEcCCCCchhHHhHHHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
++++|++|+|||.++...+....
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 68899999999988777665443
No 409
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.99 E-value=0.1 Score=49.37 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=28.6
Q ss_pred CCHHHHhHHHhHhcCCc--EEEEcCCCCchhHHhHHHHHHHHh
Q 013392 42 PTKVQAQAIPVILSGRH--VLVNAATGTGKTVAYLAPIINHLQ 82 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~--~il~~~tG~GKT~~~~~~~~~~~~ 82 (444)
+.+.|.+.+..+++... +++.||||||||.+ +..++..+.
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 46788888888775543 57889999999965 444555543
No 410
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.95 E-value=0.25 Score=48.42 Aligned_cols=83 Identities=16% Similarity=0.253 Sum_probs=70.3
Q ss_pred ccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEeccc
Q 013392 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA 396 (444)
Q Consensus 317 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~ 396 (444)
..+..+.+.+++.-.|++.++.+.+...+ .|+.+..+.|++....|..+++...+|+.+++|+|.++
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~-------------~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL 375 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEP-------------LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL 375 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhh-------------cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh
Confidence 56789999999998888888777665322 17889999999999999999999999999999999875
Q ss_pred -ccCCCCCCCcEEEEcc
Q 013392 397 -ARGLDFPKVKCIIQYD 412 (444)
Q Consensus 397 -~~G~di~~~~~vi~~~ 412 (444)
...+++.++..||.-.
T Consensus 376 iQd~V~F~~LgLVIiDE 392 (677)
T COG1200 376 IQDKVEFHNLGLVIIDE 392 (677)
T ss_pred hhcceeecceeEEEEec
Confidence 6789998888887643
No 411
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.94 E-value=1.4 Score=43.08 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHH
Q 013392 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~ 106 (444)
+.+.+.++..|++..+.. +.++. .+.+-.+.-.|--.|||... .+++..++.. -.+-++-++++-+-.+
T Consensus 177 ~r~~~~lk~~Fdi~~~s~---~~l~~-FKQkaTVFLVPRRHGKTWf~-VpiIsllL~s------~~gI~IGYvAHqKhvs 245 (668)
T PHA03372 177 NRVLEYLLHVFDIEFLSE---SSLNI-FKQKATVFLVPRRHGKTWFI-IPIISFLLKN------IIGISIGYVAHQKHVS 245 (668)
T ss_pred HHHHHHHHHHcCCcccCH---HHHHH-hhccceEEEecccCCceehH-HHHHHHHHHh------hcCceEEEEeeHHHHH
Confidence 344555555555443332 33333 34556677789999999754 4444444331 3466799999987777
Q ss_pred HHHHHHH----HHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchH----HHHHHhccCccccCCccEEEEech
Q 013392 107 LQVYEIL----HKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGR----LLDHLKHTSSFLHTNLRWIIFDEA 178 (444)
Q Consensus 107 ~q~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~----l~~~l~~~~~~~~~~~~lvV~DE~ 178 (444)
+-+.+++ ++|++... . .... +..|.+.-|.. ++..-...+..-.+.++++++||+
T Consensus 246 ~~Vf~EI~~~lrrwF~~~~--v-i~~k--------------~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA 308 (668)
T PHA03372 246 QFVLKEVEFRCRRMFPRKH--T-IENK--------------DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEA 308 (668)
T ss_pred HHHHHHHHHHHhhhcCccc--e-eeec--------------CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehh
Confidence 6665554 44443211 1 1110 01233333321 111112224455678999999999
Q ss_pred hHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeec
Q 013392 179 DRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATL 225 (444)
Q Consensus 179 h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~ 225 (444)
| +..+ +.+..++-.+... .+.+|+.|.|-
T Consensus 309 ~-FI~~---~a~~tilgfm~q~--------------~~KiIfISS~N 337 (668)
T PHA03372 309 H-FIKK---DAFNTILGFLAQN--------------TTKIIFISSTN 337 (668)
T ss_pred h-ccCH---HHHHHhhhhhccc--------------CceEEEEeCCC
Confidence 9 4443 4555555555433 67778887664
No 412
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.93 E-value=0.28 Score=51.28 Aligned_cols=97 Identities=11% Similarity=0.098 Sum_probs=72.3
Q ss_pred CCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHH
Q 013392 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (444)
Q Consensus 300 ~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 379 (444)
..|.......+-... ..+.+++|.+++...|.+.++.+++.... .+.++..++|..+..++.+++
T Consensus 483 sGKT~val~a~l~al--~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~-------------~~i~v~~Lsg~~~~~e~~~~~ 547 (926)
T TIGR00580 483 FGKTEVAMRAAFKAV--LDGKQVAVLVPTTLLAQQHFETFKERFAN-------------FPVTIELLSRFRSAKEQNEIL 547 (926)
T ss_pred ccHHHHHHHHHHHHH--HhCCeEEEEeCcHHHHHHHHHHHHHHhcc-------------CCcEEEEEeccccHHHHHHHH
Confidence 446554443322221 23578999999999999999988775321 155778899999999999999
Q ss_pred HHhhcCCCcEEEEecc-cccCCCCCCCcEEEEc
Q 013392 380 GAFKTEKKALLLSTDV-AARGLDFPKVKCIIQY 411 (444)
Q Consensus 380 ~~f~~g~~~iLi~t~~-~~~G~di~~~~~vi~~ 411 (444)
+.+.+|+.+|+|+|.. +...+.+.++.++|.-
T Consensus 548 ~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 548 KELASGKIDILIGTHKLLQKDVKFKDLGLLIID 580 (926)
T ss_pred HHHHcCCceEEEchHHHhhCCCCcccCCEEEee
Confidence 9999999999999985 4456778888888753
No 413
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.88 Score=44.56 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=33.7
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHh--HhcCCcEEEEcCCCCchhHHhHHHHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV--ILSGRHVLVNAATGTGKTVAYLAPII 78 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~--~~~~~~~il~~~tG~GKT~~~~~~~~ 78 (444)
....+|.+.+=-......++....+.-.++.+ +.. +...+.+++.||+|+|||+.+-..+.
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~---~~~~~~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPEL---FRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHH---HHhcCCCCCCeeEEECCCCCCHHHHHHHHHh
Confidence 44566666554455555554443322112211 222 22345789999999999987665444
No 414
>PF05729 NACHT: NACHT domain
Probab=93.71 E-value=0.74 Score=37.17 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
-++|.|++|+|||..+..
T Consensus 2 ~l~I~G~~G~GKStll~~ 19 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRK 19 (166)
T ss_pred EEEEECCCCCChHHHHHH
Confidence 368999999999976544
No 415
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.69 E-value=0.084 Score=54.89 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=74.1
Q ss_pred CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
.+.|.......+..........++|+|+.-...-..+...+.-. ++..- ..+ ..++....
T Consensus 1201 fg~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N-----------------~I~~~-~~~--~t~d~~dc 1260 (1394)
T KOG0298|consen 1201 FGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMN-----------------LIKKQ-LDG--ETEDFDDC 1260 (1394)
T ss_pred hccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhh-----------------hhHhh-hcc--CCcchhhh
Confidence 35566655554444333455578889887665554444433322 22211 111 13334445
Q ss_pred HHHhhcCCCcEE-EEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCc
Q 013392 379 FGAFKTEKKALL-LSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNF 433 (444)
Q Consensus 379 ~~~f~~g~~~iL-i~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~ 433 (444)
+..|++ +++| +-+...+.|+|+-.+.+|+..++.-+...-.|.+||+.|.||+
T Consensus 1261 ~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~ 1314 (1394)
T KOG0298|consen 1261 IICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQK 1314 (1394)
T ss_pred hhhccc--ceEEEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccc
Confidence 556664 5554 4578889999999999999999999999999999999999984
No 416
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.67 E-value=1.1 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=18.6
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
..+++||.|+|||..+...+....
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999988776554433
No 417
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.66 E-value=0.63 Score=38.79 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=17.0
Q ss_pred cEEEEcCCCCchhHHhHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~ 79 (444)
..++.||.|.|||..+...+..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~ 37 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999766654443
No 418
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.33 Score=43.08 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~ 107 (444)
+=+++.||+|+|||. ...++.+++.-+-.. .+....++=..+-+|-.
T Consensus 178 RliLlhGPPGTGKTS-LCKaLaQkLSIR~~~---~y~~~~liEinshsLFS 224 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTS-LCKALAQKLSIRTND---RYYKGQLIEINSHSLFS 224 (423)
T ss_pred eEEEEeCCCCCChhH-HHHHHHHhheeeecC---ccccceEEEEehhHHHH
Confidence 346899999999994 456666665432111 12233555555544433
No 419
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.58 E-value=0.37 Score=41.54 Aligned_cols=45 Identities=16% Similarity=0.054 Sum_probs=29.0
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~ 103 (444)
|+-+.|.|++|+|||..++..+........ ..+...+++++....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~---~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGE---LGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccc---cCCCcceEEEEecCC
Confidence 456799999999999887776655443210 001235688877654
No 420
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.56 E-value=0.22 Score=43.41 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCCchhHH
Q 013392 54 LSGRHVLVNAATGTGKTVA 72 (444)
Q Consensus 54 ~~~~~~il~~~tG~GKT~~ 72 (444)
-.|+.+++.||.|+|||..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3788999999999999953
No 421
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.54 E-value=1.8 Score=37.42 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 013392 56 GRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~ 74 (444)
-++++..||+|+|||..+-
T Consensus 151 PknVLFyGppGTGKTm~Ak 169 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAK 169 (368)
T ss_pred cceeEEECCCCccHHHHHH
Confidence 4789999999999997543
No 422
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.53 E-value=0.18 Score=51.55 Aligned_cols=84 Identities=13% Similarity=0.256 Sum_probs=62.1
Q ss_pred cccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecc
Q 013392 316 TEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV 395 (444)
Q Consensus 316 ~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~ 395 (444)
...+.++.+.+++...+.+.++.|........ ..+..+. +|+.++..++++.+++|.+|+.+|||+|..
T Consensus 122 a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~----------~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 122 AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG----------SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC----------Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 45678999999999999999999887642211 0133334 999999999999999999999999999986
Q ss_pred c-ccCCC-CC--CCcEEEE
Q 013392 396 A-ARGLD-FP--KVKCIIQ 410 (444)
Q Consensus 396 ~-~~G~d-i~--~~~~vi~ 410 (444)
. ..-+| +. +.++|+.
T Consensus 191 FL~k~~e~L~~~kFdfifV 209 (1187)
T COG1110 191 FLSKRFEELSKLKFDFIFV 209 (1187)
T ss_pred HHHhhHHHhcccCCCEEEE
Confidence 4 33222 12 3556554
No 423
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.50 E-value=0.6 Score=48.13 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=35.3
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhH--hcCCcEEEEcCCCCchhHHhH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVI--LSGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~--~~~~~~il~~~tG~GKT~~~~ 74 (444)
....+|++++-.+...+.+.+...+.-.+ .+.+..+ ..++.+++.||+|+|||..+-
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~---~~~~~~~gi~~~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKH---PELFEHLGIEPPKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhC---HHHHHhcCCCCCceEEEECCCCCChHHHHH
Confidence 35578888887777777774443221111 1222222 345789999999999997543
No 424
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.49 E-value=1.2 Score=39.36 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=59.5
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcch
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (444)
.|.=+++.|.||.|||..++..+.+.... .+..|+++..- .-..+...++-.......... +..+...
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~--------~~~~vly~SlE-m~~~~l~~R~la~~s~v~~~~---i~~g~l~ 85 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALN--------GGYPVLYFSLE-MSEEELAARLLARLSGVPYNK---IRSGDLS 85 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHT--------TSSEEEEEESS-S-HHHHHHHHHHHHHTSTHHH---HHCCGCH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHh--------cCCeEEEEcCC-CCHHHHHHHHHHHhhcchhhh---hhccccC
Confidence 34457999999999999888877777655 23558887753 333334444333222111110 1112111
Q ss_pred hHHHH-------HhcCCCcEEE-eC----chHHHHHHhccCccccCCccEEEEechhHhhh
Q 013392 135 SKEKA-------RLRKGISILV-AT----PGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (444)
Q Consensus 135 ~~~~~-------~~~~~~~iii-~T----~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~ 183 (444)
..++. .+.. ..++| .+ ++.+...+....... ..+++||+|=.|.+..
T Consensus 86 ~~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~-~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 86 DEEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREG-KKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHS-TTEEEEEEEEGGGSBT
T ss_pred HHHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhc-cCCCEEEechHHHhcC
Confidence 22211 1222 33443 33 334555444322221 5789999999997655
No 425
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.34 E-value=0.043 Score=47.66 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=12.8
Q ss_pred EEEEcCCCCchhHHhH
Q 013392 59 VLVNAATGTGKTVAYL 74 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~ 74 (444)
+++.|+.|+|||....
T Consensus 1 ~vv~G~pGsGKSt~i~ 16 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIK 16 (234)
T ss_pred CEEEcCCCCCHHHHHH
Confidence 3789999999997443
No 426
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=0.97 Score=44.24 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=38.5
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHh--cCCcEEEEcCCCCchhHHhHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~il~~~tG~GKT~~~~~ 75 (444)
--..+|++.|=-+++.+.|++.--+. -.+-+.+..+- .-+.+++.||+|+|||+.+-.
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p---~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAka 487 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWP---LKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKA 487 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhh---hhchHHHHHhcCCCCceEEEECCCCcchHHHHHH
Confidence 45678999887788888885442221 12234444433 347899999999999986544
No 427
>PRK08840 replicative DNA helicase; Provisional
Probab=93.28 E-value=0.88 Score=43.81 Aligned_cols=121 Identities=16% Similarity=0.131 Sum_probs=60.7
Q ss_pred HHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEE
Q 013392 49 AIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYV 128 (444)
Q Consensus 49 ~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~ 128 (444)
.+.-+..|.=+++.|.||.|||..++..+...... .+..|+|+.. ..-..|+..++-........ ..+
T Consensus 210 ~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~--------~~~~v~~fSl-EMs~~ql~~Rlla~~s~v~~---~~i 277 (464)
T PRK08840 210 KTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD--------QDKPVLIFSL-EMPAEQLMMRMLASLSRVDQ---TKI 277 (464)
T ss_pred hhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh--------CCCeEEEEec-cCCHHHHHHHHHHhhCCCCH---HHH
Confidence 33334445567889999999998776655554432 1334666543 35566666665443221111 111
Q ss_pred eCCcchhHHHH-------HhcCCCcEEEe-----CchHHHHHHhccCccccCCccEEEEechhHhh
Q 013392 129 MGGENRSKEKA-------RLRKGISILVA-----TPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 129 ~~~~~~~~~~~-------~~~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~ 182 (444)
..+.-..+++. .+..+..+.|- |+..+.....+... ....+++||+|=.|.+.
T Consensus 278 ~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~-~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 278 RTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAR-EHGGLSMIMVDYLQLMR 342 (464)
T ss_pred hcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccHHhcC
Confidence 11221122222 22233445553 23344433322111 11258899999999764
No 428
>PHA00012 I assembly protein
Probab=93.27 E-value=0.97 Score=40.51 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=20.3
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhc
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQS 83 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~ 83 (444)
.++.|..|+|||+.++.-+...+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 4789999999999888877776655
No 429
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.07 Score=47.01 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=38.2
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCC----------CCHHHHhHHHh------HhcCCcEEEEcCCCCchhHHhHHHHHH
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEA----------PTKVQAQAIPV------ILSGRHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~----------~~~~Q~~~~~~------~~~~~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
.......++-+.+|...| +.|-+-. -++|=...-.. -++..|+++.||||||||+.|- .+.
T Consensus 42 ~~~~~~~lPtP~eik~~L-d~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAq--TLA 118 (408)
T COG1219 42 DEKELSELPTPKEIKAHL-DEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQ--TLA 118 (408)
T ss_pred cchhhccCCChHHHHHHh-hhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHH--HHH
Confidence 345667788889999988 7663320 12221111100 0133478999999999998544 344
Q ss_pred HHhc
Q 013392 80 HLQS 83 (444)
Q Consensus 80 ~~~~ 83 (444)
++++
T Consensus 119 k~Ln 122 (408)
T COG1219 119 KILN 122 (408)
T ss_pred HHhC
Confidence 4444
No 430
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.23 E-value=1.4 Score=35.88 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=34.0
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
+++.|++|||||..+...+.. .+.+++++......-..+.+++..+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------------~~~~~~y~at~~~~d~em~~rI~~H 47 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------------LGGPVTYIATAEAFDDEMAERIARH 47 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------------cCCCeEEEEccCcCCHHHHHHHHHH
Confidence 578999999999876654433 1345889988888877777777665
No 431
>PRK13764 ATPase; Provisional
Probab=93.16 E-value=0.22 Score=49.07 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=19.6
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
.+++++++||||||||.. +.+++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 467899999999999964 45455554
No 432
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.15 E-value=2.2 Score=43.97 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=17.4
Q ss_pred CcEEEEcCCCCchhHHhHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPII 78 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~ 78 (444)
.++++.||+|+|||..+-..+.
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 5899999999999977554433
No 433
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.12 E-value=0.15 Score=42.84 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=16.0
Q ss_pred EEEEcCCCCchhHHhHHHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
++++||||+|||... ..++..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 689999999999754 3344444
No 434
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=4.6 Score=34.99 Aligned_cols=57 Identities=25% Similarity=0.289 Sum_probs=34.3
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHH-hHhcCCcEEEEcCCCCchhHHhHH
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIP-VILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~-~~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
-.+|.++|=+++.++-|.+.-...-++|- .... -+---+.+++.+|+|+|||+++-.
T Consensus 173 dvty~dvggckeqieklrevve~pll~pe--rfv~lgidppkgvllygppgtgktl~ara 230 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELPLLHPE--RFVNLGIDPPKGVLLYGPPGTGKTLCARA 230 (435)
T ss_pred CcccccccchHHHHHHHHHHHhccccCHH--HHhhcCCCCCCceEEeCCCCCchhHHHHH
Confidence 45677777777777777544322212221 1110 112347899999999999987654
No 435
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.07 E-value=0.91 Score=43.59 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=37.4
Q ss_pred hHHHhHhc-----CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 48 QAIPVILS-----GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 48 ~~~~~~~~-----~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
..++.++. |.-+++.|++|+|||..++..+...... +.+++++..- +...|...+...+
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~---------g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN---------QMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc---------CCcEEEEECc-CCHHHHHHHHHHc
Confidence 34555553 3557999999999998776654443322 3458888764 4456665555543
No 436
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.07 E-value=1.5 Score=35.77 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=32.3
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
.+++.|++|||||..+...+.. . +..++++......-.++.+++..+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~-~-----------~~~~~~iat~~~~~~e~~~ri~~h~ 50 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ-S-----------GLQVLYIATAQPFDDEMAARIAHHR 50 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH-c-----------CCCcEeCcCCCCChHHHHHHHHHHH
Confidence 4789999999999876654332 1 1236777766666666667766654
No 437
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.06 E-value=4.9 Score=36.61 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=16.9
Q ss_pred cEEEEcCCCCchhHHhHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~ 79 (444)
-+.+.||+|+|||.++...+..
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4678899999999876665544
No 438
>PF12846 AAA_10: AAA-like domain
Probab=93.04 E-value=0.14 Score=46.27 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=26.2
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
+.++++.|+||+|||..+...+.+.+.. +..++++=|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~---------g~~~~i~D~~ 38 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRR---------GPRVVIFDPK 38 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHc---------CCCEEEEcCC
Confidence 3578999999999998777555444433 4446666554
No 439
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.93 E-value=0.65 Score=35.34 Aligned_cols=61 Identities=16% Similarity=0.053 Sum_probs=36.8
Q ss_pred CcEE--EEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 57 RHVL--VNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 57 ~~~i--l~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
+..+ +.|+||+|||+++-+.+.+.......- +--....+..-.|...-+.+..++++.+..
T Consensus 52 KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S-~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~ 114 (127)
T PF06309_consen 52 KPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKS-PFVHQFIATHHFPHNSNVDEYKEQLKSWIR 114 (127)
T ss_pred CCEEEEeecCCCCcHHHHHHHHHHHHHhcccCC-CceeeecccccCCCchHHHHHHHHHHHHHH
Confidence 4444 679999999999888776655442110 000001122334777777777777877754
No 440
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.90 E-value=0.39 Score=48.33 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=33.1
Q ss_pred cEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecc
Q 013392 171 RWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (444)
Q Consensus 171 ~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~ 226 (444)
=++|+|+.|.+.+......+..+++..+. +...++.|-+-|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~---------------~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPE---------------NLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCC---------------CeEEEEEeccCC
Confidence 39999999998888778888888888876 777777776644
No 441
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.89 E-value=0.96 Score=43.44 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=33.2
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.|.=++|.|++|+|||..++..+.+.... .+..++++.. ..-..|..+++...
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--------~g~~vl~~Sl-Em~~~~i~~R~~~~ 246 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIK--------EGKPVAFFSL-EMSAEQLAMRMLSS 246 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHh--------CCCeEEEEeC-cCCHHHHHHHHHHH
Confidence 34557899999999998777666554432 1344776653 34555555555443
No 442
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.88 E-value=0.67 Score=44.28 Aligned_cols=55 Identities=22% Similarity=0.157 Sum_probs=34.4
Q ss_pred hHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 52 VILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 52 ~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
-+..|.=+++.|++|+|||..++..+.+.... .+..|+|+. ...-..|+..++-.
T Consensus 190 G~~~g~liviag~pg~GKT~~al~ia~~~a~~--------~g~~v~~fS-lEm~~~~l~~Rl~~ 244 (421)
T TIGR03600 190 GLVKGDLIVIGARPSMGKTTLALNIAENVALR--------EGKPVLFFS-LEMSAEQLGERLLA 244 (421)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEE-CCCCHHHHHHHHHH
Confidence 33445667999999999998777766555422 234477765 33455555555443
No 443
>PRK08760 replicative DNA helicase; Provisional
Probab=92.87 E-value=1.2 Score=43.22 Aligned_cols=114 Identities=18% Similarity=0.111 Sum_probs=59.9
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcch
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (444)
.|.=++|.|.+|.|||..++..+...... .+..|+|+. ...-..|+..++........... +..+...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~--------~g~~V~~fS-lEMs~~ql~~Rl~a~~s~i~~~~---i~~g~l~ 295 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIK--------SKKGVAVFS-MEMSASQLAMRLISSNGRINAQR---LRTGALE 295 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHh--------cCCceEEEe-ccCCHHHHHHHHHHhhCCCcHHH---HhcCCCC
Confidence 34556889999999998877766555433 133366654 34556677766655433222111 1112212
Q ss_pred hHHHHH------hcCCCcEEEe-----CchHHHHHHhccCccccCCccEEEEechhHhh
Q 013392 135 SKEKAR------LRKGISILVA-----TPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 135 ~~~~~~------~~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~ 182 (444)
..++.. ...+..+.|. |++.+...+.+... ...+++||+|=.+.+.
T Consensus 296 ~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~--~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 296 DEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR--EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH--hcCCCEEEEecHHhcC
Confidence 222211 1122445554 34455444433211 1357899999999663
No 444
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.81 E-value=0.48 Score=40.88 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCchhHH
Q 013392 56 GRHVLVNAATGTGKTVA 72 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~ 72 (444)
++.++|.||.|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 46789999999999964
No 445
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.76 E-value=0.14 Score=45.20 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=23.3
Q ss_pred hHHHhHhcCCcEEEEcCCCCchhHHhHHHH
Q 013392 48 QAIPVILSGRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 48 ~~~~~~~~~~~~il~~~tG~GKT~~~~~~~ 77 (444)
++...+..++++++.||+|+|||..+...+
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la 42 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVA 42 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 344555588999999999999998776543
No 446
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.75 E-value=1.8 Score=39.32 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=27.5
Q ss_pred EEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcC
Q 013392 147 ILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (444)
Q Consensus 147 iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~ 199 (444)
|-|-....+.+.+...+. ....+++|+|++|.|. ....+.+++.+-.
T Consensus 104 I~id~ir~i~~~l~~~p~--~~~~kVvII~~ae~m~----~~aaNaLLK~LEE 150 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL--EAPRKVVVIEDAETMN----EAAANALLKTLEE 150 (314)
T ss_pred CcHHHHHHHHHHHccCcc--cCCceEEEEEchhhcC----HHHHHHHHHHHhC
Confidence 333333445555544222 2478899999999863 3455566666644
No 447
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.75 E-value=1.8 Score=42.22 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=16.4
Q ss_pred EEEEcCCCCchhHHhHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~ 79 (444)
.++.||.|+|||..+...+..
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~ 59 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARA 59 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 489999999999876654444
No 448
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.70 E-value=4.1 Score=38.77 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=18.7
Q ss_pred cEEEEcCCCCchhHHhHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
-++++|++|+|||.++...+...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 36899999999999887766654
No 449
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.70 E-value=0.21 Score=41.62 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=25.2
Q ss_pred CCHHHHhHHHhHh-cCCcEEEEcCCCCchhHH
Q 013392 42 PTKVQAQAIPVIL-SGRHVLVNAATGTGKTVA 72 (444)
Q Consensus 42 ~~~~Q~~~~~~~~-~~~~~il~~~tG~GKT~~ 72 (444)
+.+.|.+.+.... .+..+++.||||+|||..
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 6677877777655 678899999999999964
No 450
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.69 E-value=0.27 Score=45.57 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHh
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQ 82 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~ 82 (444)
.+..++++||||||||.. +.+++..+.
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 344689999999999964 455555553
No 451
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=92.55 E-value=0.26 Score=50.19 Aligned_cols=68 Identities=22% Similarity=0.204 Sum_probs=54.9
Q ss_pred CCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.++-|.+++..=.+.....++||+|+|||-.+.-.+.....+ .+..+++|++.+..-.+|..+.+.+.
T Consensus 739 ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn-------~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 739 FTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHN-------SPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred cCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhc-------CCCcceEEEEecccchhHHHHHHHhc
Confidence 577898888776677889999999999999887755554444 56788999999999999888877654
No 452
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=1.3 Score=44.78 Aligned_cols=35 Identities=26% Similarity=0.182 Sum_probs=24.8
Q ss_pred HHHhHHHhHhc------------C---CcEEEEcCCCCchhHHhHHHHHH
Q 013392 45 VQAQAIPVILS------------G---RHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 45 ~Q~~~~~~~~~------------~---~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
-|.+|+.++.. + ..+++.||||.|||..+-..+..
T Consensus 495 GQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~ 544 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA 544 (786)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH
Confidence 48888877652 1 24688999999999876654433
No 453
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.47 E-value=0.32 Score=43.05 Aligned_cols=53 Identities=25% Similarity=0.264 Sum_probs=37.7
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
.|+.+++.|++|+|||..++..+...+.. +.++++++-. +...+..+.+..+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~---------ge~vlyvs~~-e~~~~l~~~~~~~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE---------GEPVLYVSTE-ESPEELLENARSFG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc---------CCcEEEEEec-CCHHHHHHHHHHcC
Confidence 45778999999999998877777666644 4558887754 55555666665543
No 454
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.43 E-value=1.4 Score=42.87 Aligned_cols=61 Identities=20% Similarity=0.124 Sum_probs=43.4
Q ss_pred HhHHHhHhc-----CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 47 AQAIPVILS-----GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 47 ~~~~~~~~~-----~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
...++.++. |.-+++.||+|+|||..++..+.+.+.+ +.+++++. ..+-..|....+..+.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~---------ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN---------KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 355666664 3567999999999999877766665533 55688866 4577777777777653
No 455
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.41 E-value=0.26 Score=47.66 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=26.3
Q ss_pred CCHHHHhHHHhHhcC-C-cEEEEcCCCCchhHHhHHHHHHHH
Q 013392 42 PTKVQAQAIPVILSG-R-HVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~-~-~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
+.+.|.+.+..+... + -+++.||||||||.+. .+++..+
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 356677777776643 3 3689999999999654 3344444
No 456
>PRK04328 hypothetical protein; Provisional
Probab=92.38 E-value=0.32 Score=42.64 Aligned_cols=59 Identities=25% Similarity=0.280 Sum_probs=38.3
Q ss_pred HHHhHh-----cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 49 AIPVIL-----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 49 ~~~~~~-----~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
.++.++ .|.-+++.|++|+|||..++..+.+.+.. +.+++++. +.+-..+..+.+..+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~---------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM---------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc---------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 445555 34567899999999998877766665533 44577776 3344555555555553
No 457
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.35 E-value=0.48 Score=41.66 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=33.1
Q ss_pred hHHHhHhcC-----CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccH
Q 013392 48 QAIPVILSG-----RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (444)
Q Consensus 48 ~~~~~~~~~-----~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~ 103 (444)
..++.++.| .-.=++|+.|+|||-.++..++........ .+.+.+++||--.-
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~---~g~~~~vvyidTe~ 82 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEI---GGLGGKVVYIDTEG 82 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCT---TSSSSEEEEEESSS
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhccccc---ccCCCceEEEeCCC
Confidence 466666644 334688999999998776655544332111 13456799987543
No 458
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.26 E-value=2.5 Score=41.90 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=17.6
Q ss_pred cEEEEcCCCCchhHHhHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
-.++.||.|.|||.++...+...
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 36899999999998776644443
No 459
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=0.46 Score=49.30 Aligned_cols=60 Identities=27% Similarity=0.227 Sum_probs=39.0
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCC-CCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEA-PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~-~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~ 76 (444)
..+-.|+++|.....+..| +.+-+.. ++|-+.+-+ .+..-+.+++.||.|+|||+++-..
T Consensus 259 ~~~v~fd~vggl~~~i~~L-KEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~araL 319 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQL-KEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMARAL 319 (1080)
T ss_pred hcccCccccccHHHHHHHH-HHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHHHhh
Confidence 4567899999989998888 4445442 222221111 1223467999999999999876543
No 460
>PRK05595 replicative DNA helicase; Provisional
Probab=92.18 E-value=0.89 Score=43.73 Aligned_cols=114 Identities=13% Similarity=0.081 Sum_probs=57.5
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcch
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (444)
.|.=+++.|.||.|||..++..+...... .+.+|+++.. ..-..|+..++-.......... +..+...
T Consensus 200 ~g~liviaarpg~GKT~~al~ia~~~a~~--------~g~~vl~fSl-Ems~~~l~~R~~a~~~~v~~~~---~~~~~l~ 267 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFALNIAEYAALR--------EGKSVAIFSL-EMSKEQLAYKLLCSEANVDMLR---LRTGNLE 267 (444)
T ss_pred CCcEEEEEecCCCChHHHHHHHHHHHHHH--------cCCcEEEEec-CCCHHHHHHHHHHHhcCCCHHH---HhcCCCC
Confidence 34456889999999998777766543322 2444776654 3555666655444332221111 1111111
Q ss_pred hHHHHHh------cCCCcEEEe-----CchHHHHHHhccCccccCCccEEEEechhHhh
Q 013392 135 SKEKARL------RKGISILVA-----TPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 135 ~~~~~~~------~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~ 182 (444)
...+..+ ..+..+.|- |++.+...+.+... -..+++||+|=.|.+.
T Consensus 268 ~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~--~~~~~~vvIDylql~~ 324 (444)
T PRK05595 268 DKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI--EHGIDMILIDYLQLMS 324 (444)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH--hcCCCEEEEeHHHhcc
Confidence 1122111 112345553 23344433332111 1358899999999764
No 461
>PRK08506 replicative DNA helicase; Provisional
Probab=92.17 E-value=1.5 Score=42.55 Aligned_cols=113 Identities=14% Similarity=0.126 Sum_probs=59.2
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcch
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (444)
.|.=+++.|.||.|||..++..+.+.... +..|+|+. ...-..|+..++-.......... +..+.-.
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~---------g~~V~~fS-lEMs~~ql~~Rlla~~s~v~~~~---i~~~~l~ 257 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQ---------DKGVAFFS-LEMPAEQLMLRMLSAKTSIPLQN---LRTGDLD 257 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhc---------CCcEEEEe-CcCCHHHHHHHHHHHhcCCCHHH---HhcCCCC
Confidence 34557889999999998877766664422 34476664 44666777666654322211111 1111111
Q ss_pred hHHH-------HHhcCCCcEEEe-----CchHHHHHHhccCccccCCccEEEEechhHhh
Q 013392 135 SKEK-------ARLRKGISILVA-----TPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 135 ~~~~-------~~~~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~ 182 (444)
.+.+ ..+. +..+.|- |++.+...+++... ....+++||+|=.+.+.
T Consensus 258 ~~e~~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~-~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 258 DDEWERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKS-QHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEcChhhcc
Confidence 1122 1122 2345553 34445444432111 11258899999999664
No 462
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=92.16 E-value=2.7 Score=34.23 Aligned_cols=140 Identities=18% Similarity=0.176 Sum_probs=59.1
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchh-HH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS-KE 137 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 137 (444)
+.+.-..|=|||.+++=.++..+ +.+.+|+++-=-+.-.. .-+...+ ..++......+..+-... ..
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~---------G~G~rV~ivQFlKg~~~--~GE~~~l-~~l~~~~~~~~g~~f~~~~~~ 73 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA---------GHGMRVLIVQFLKGGRY--SGELKAL-KKLPNVEIERFGKGFVWRMNE 73 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH---------CTT--EEEEESS--SS----HHHHHH-GGGT--EEEE--TT----GGG
T ss_pred EEEEeCCCCCchHHHHHHHHHHH---------hCCCEEEEEEEecCCCC--cCHHHHH-HhCCeEEEEEcCCcccccCCC
Confidence 45566778899988777777666 56778888876555111 1222222 122211111111110000 00
Q ss_pred HHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchh--HHHHHHHHHhcCCCCCCCCCCCcccccc
Q 013392 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG--KEIEEILDILGSRNIGSIGEGNEVSNVK 215 (444)
Q Consensus 138 ~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 215 (444)
... + ....+..++... .......+++||+||+-...+.++. ..+..+++..+. .
T Consensus 74 ~~~-----~--~~~~~~~~~~a~--~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~---------------~ 129 (172)
T PF02572_consen 74 EEE-----D--RAAAREGLEEAK--EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPE---------------S 129 (172)
T ss_dssp HHH-----H--HHHHHHHHHHHH--HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-T---------------T
T ss_pred cHH-----H--HHHHHHHHHHHH--HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCC---------------C
Confidence 000 0 001112222222 2223357999999999877776543 445555554433 5
Q ss_pred eeEEEEEeecchhhHHHHH
Q 013392 216 RQNLLLSATLNEKVNHLAK 234 (444)
Q Consensus 216 ~~~i~~Sat~~~~~~~~~~ 234 (444)
.-+|+....++..+...+.
T Consensus 130 ~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 130 LEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -EEEEE-SS--HHHHHH-S
T ss_pred eEEEEECCCCCHHHHHhCC
Confidence 5566655555555544444
No 463
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.16 E-value=2.3 Score=44.71 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
.+.++.||+|+|||..+-.
T Consensus 195 ~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 5789999999999976644
No 464
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=0.57 Score=45.35 Aligned_cols=55 Identities=25% Similarity=0.301 Sum_probs=33.4
Q ss_pred cCCccccCCCHHHHHHHHHHcC-CCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhH
Q 013392 17 SCSFSSLGLHSTLCDQLRERLG-FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~-~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~ 74 (444)
..+|+++|=-+.....|..... +..|..|+.-.+ .--+.+++.||+|+|||..|-
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~lA~ 241 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTSLAN 241 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHHHHH
Confidence 4567777755555555533322 334544544432 234789999999999996443
No 465
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=92.12 E-value=0.49 Score=48.19 Aligned_cols=71 Identities=24% Similarity=0.171 Sum_probs=56.9
Q ss_pred CCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
.|++-|++|+... ...++|.+..|+|||.+...-+.+.+.... -....++.++=|...+.++.+++.+...
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~-----v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGG-----VDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCC-----cChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4889999999885 667899999999999988777777665521 1234489999999999999999998875
No 466
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.08 E-value=1.8 Score=45.22 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=17.9
Q ss_pred CcEEEEcCCCCchhHHhHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
.++++.||+|+|||..+-..+..
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999876544333
No 467
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.04 E-value=4.1 Score=37.15 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=19.7
Q ss_pred CCccEEEEechhHhhhcchhHHHHHHHHHhcC
Q 013392 168 TNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (444)
Q Consensus 168 ~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~ 199 (444)
...+++|+||+|.+. ....+.+++.+..
T Consensus 92 ~~~kv~iI~~ad~m~----~~a~naLLK~LEe 119 (313)
T PRK05564 92 GDKKVIIIYNSEKMT----EQAQNAFLKTIEE 119 (313)
T ss_pred CCceEEEEechhhcC----HHHHHHHHHHhcC
Confidence 477899999999763 3445566666654
No 468
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.01 E-value=0.55 Score=42.43 Aligned_cols=56 Identities=25% Similarity=0.276 Sum_probs=35.3
Q ss_pred HHHhHhc------CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHH
Q 013392 49 AIPVILS------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (444)
Q Consensus 49 ~~~~~~~------~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l 113 (444)
+++..+. |+-+-+.+|.|+|||..++..+.+.... +..++|+-+-.++...+.+.+
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~---------g~~~a~ID~e~~ld~~~a~~l 101 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ---------GGICAFIDAEHALDPEYAESL 101 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---------T-EEEEEESSS---HHHHHHT
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc---------cceeEEecCcccchhhHHHhc
Confidence 4555554 3456789999999998877766554322 556888888777777655543
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.00 E-value=0.28 Score=45.27 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=25.8
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L 105 (444)
.+..++++||||+|||... .+++..+.. ....+++.+-...+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~-------~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINK-------NAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCc-------CCCCEEEEEcCChhh
Confidence 3567899999999999654 444444422 123446665544343
No 470
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=91.95 E-value=4.8 Score=36.97 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=19.8
Q ss_pred CCccEEEEechhHhhhcchhHHHHHHHHHhcC
Q 013392 168 TNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (444)
Q Consensus 168 ~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~ 199 (444)
...+++|+||+|.+.. ...+.+++.+..
T Consensus 109 ~~~kvviI~~a~~~~~----~a~NaLLK~LEE 136 (329)
T PRK08058 109 SNKKVYIIEHADKMTA----SAANSLLKFLEE 136 (329)
T ss_pred cCceEEEeehHhhhCH----HHHHHHHHHhcC
Confidence 4678999999998733 455566666654
No 471
>PHA02542 41 41 helicase; Provisional
Probab=91.88 E-value=0.9 Score=43.80 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=31.2
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
.=+++.|.+|.|||..++..+...... +..|+++. ...-..|+..++..
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~---------g~~Vl~fS-LEM~~~ql~~Rl~a 239 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQ---------GYNVLYIS-MEMAEEVIAKRIDA 239 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhc---------CCcEEEEe-ccCCHHHHHHHHHH
Confidence 346889999999998887766665422 33466654 33445555555543
No 472
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.87 E-value=1.9 Score=45.13 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=17.3
Q ss_pred CcEEEEcCCCCchhHHhHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPII 78 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~ 78 (444)
.+.++.||+|+|||..+-..+.
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4789999999999987654333
No 473
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=1.6 Score=39.69 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=31.4
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHH
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~ 77 (444)
.+|.+.+=-+.+.+.|++.--+.--+|-.-.-...+..-+.+++.+|+|+|||..+-..+
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~A 148 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIA 148 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHH
Confidence 456666655666666644321110111111111111133679999999999997655433
No 474
>PHA00350 putative assembly protein
Probab=91.86 E-value=1.1 Score=41.70 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=17.3
Q ss_pred EEEEcCCCCchhHHhHHH-HHHHH
Q 013392 59 VLVNAATGTGKTVAYLAP-IINHL 81 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~-~~~~~ 81 (444)
.++.|..|+|||+.++.. ++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 478999999999988763 44443
No 475
>PRK08006 replicative DNA helicase; Provisional
Probab=91.82 E-value=2.1 Score=41.35 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=59.5
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcch
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (444)
.|.=++|.|.+|.|||..++..+.+.... .+..|+|+. ...-..|+..++-........ ..+..+.-.
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~--------~g~~V~~fS-lEM~~~ql~~Rlla~~~~v~~---~~i~~~~l~ 290 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAML--------QDKPVLIFS-LEMPGEQIMMRMLASLSRVDQ---TRIRTGQLD 290 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEe-ccCCHHHHHHHHHHHhcCCCH---HHhhcCCCC
Confidence 44556888999999998777766555433 133466654 335666666655543322111 111112212
Q ss_pred hHHHH-------HhcCCCcEEEe-----CchHHHHHHhccCccccCCccEEEEechhHhh
Q 013392 135 SKEKA-------RLRKGISILVA-----TPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 135 ~~~~~-------~~~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~ 182 (444)
.+++. .+..+..+.|- |+..+.....+... ....+++||+|=.|.+.
T Consensus 291 ~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 291 DEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFR-EHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccHHHcc
Confidence 22222 12234456653 34444443332111 11258899999999764
No 476
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=91.81 E-value=4.6 Score=32.99 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=26.4
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~ 104 (444)
+.+.-..|=|||.+++=.++..+ +.+.+|+++-=-+.
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAa---------G~G~rV~iiQFlKg 60 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIA---------GQGTPVLIVQFLKG 60 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHh---------cCCCEEEEEEEecC
Confidence 45556778899988887777766 56778888764443
No 477
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.78 E-value=1.3 Score=43.52 Aligned_cols=41 Identities=20% Similarity=0.490 Sum_probs=33.0
Q ss_pred cCCCCCCHHHHhHHHhHh----cCCcEEEEcCCCCchhHHhHHHHH
Q 013392 37 LGFEAPTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPII 78 (444)
Q Consensus 37 ~~~~~~~~~Q~~~~~~~~----~~~~~il~~~tG~GKT~~~~~~~~ 78 (444)
|+|. |+.+|.+.+..+. .|+-.|+..|||+|||++.+-+++
T Consensus 12 fPy~-PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal 56 (821)
T KOG1133|consen 12 FPYT-PYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL 56 (821)
T ss_pred CCCC-chhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH
Confidence 4665 9999988877765 788899999999999997655443
No 478
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.78 E-value=1.6 Score=46.48 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=27.3
Q ss_pred cEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeec
Q 013392 171 RWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATL 225 (444)
Q Consensus 171 ~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~ 225 (444)
-+||+|++|.+-+......+..++...+. ...+++.|-+.
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~---------------~~~lv~~sR~~ 162 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPE---------------NLTLVVLSRNL 162 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCC---------------CeEEEEEeCCC
Confidence 39999999976444445566677766654 56666666654
No 479
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.77 E-value=0.6 Score=50.15 Aligned_cols=80 Identities=11% Similarity=0.119 Sum_probs=64.2
Q ss_pred cCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecc-c
Q 013392 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV-A 396 (444)
Q Consensus 318 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~-~ 396 (444)
.+.+++|.++++..+.++++.+++.... .+.++..+++..+..++..+++...+|..+|+|+|.. +
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~-------------~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL 714 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-------------WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL 714 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhcc-------------CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH
Confidence 4678999999999999999988764211 1456778999999999999999999999999999974 4
Q ss_pred ccCCCCCCCcEEEE
Q 013392 397 ARGLDFPKVKCIIQ 410 (444)
Q Consensus 397 ~~G~di~~~~~vi~ 410 (444)
...+++.++..+|.
T Consensus 715 ~~~v~~~~L~lLVI 728 (1147)
T PRK10689 715 QSDVKWKDLGLLIV 728 (1147)
T ss_pred hCCCCHhhCCEEEE
Confidence 44566778888775
No 480
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.70 E-value=0.47 Score=40.84 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=35.9
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.+.-+++.|++|+|||..++..+...+.+ +.+++++... .-..+..+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~---------g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN---------GEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEECC-CCHHHHHHHHHHc
Confidence 34567999999999998777666555433 4557887654 4566666666665
No 481
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.67 E-value=0.35 Score=44.74 Aligned_cols=26 Identities=42% Similarity=0.618 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
.+.-++++||||||||.. +.+++..+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 456789999999999964 34455544
No 482
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.62 E-value=0.31 Score=43.38 Aligned_cols=42 Identities=19% Similarity=0.383 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L 105 (444)
.+.+++++|+||||||... .+++..+.. ...+++.+-...++
T Consensus 126 ~~~~ili~G~tGSGKTT~l-~all~~i~~--------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLL-NALLEEIPP--------EDERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHCHT--------TTSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHH-HHHhhhccc--------cccceEEeccccce
Confidence 5678999999999999654 445554433 12456666655444
No 483
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.61 E-value=0.33 Score=44.02 Aligned_cols=54 Identities=20% Similarity=0.285 Sum_probs=35.0
Q ss_pred CCHHHHh-HHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHH
Q 013392 42 PTKVQAQ-AIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (444)
Q Consensus 42 ~~~~Q~~-~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L 105 (444)
+.+.|.. .+.++..+++++++|+||+|||. .+.+++..+- ...+++.+-.+.++
T Consensus 128 ~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~Ip---------~~~rivtIEdt~E~ 182 (312)
T COG0630 128 ISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFIP---------PEERIVTIEDTPEL 182 (312)
T ss_pred CCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhCC---------chhcEEEEeccccc
Confidence 5666644 45555688999999999999994 4555555442 23446665555433
No 484
>PRK09165 replicative DNA helicase; Provisional
Probab=91.61 E-value=1.5 Score=42.77 Aligned_cols=121 Identities=11% Similarity=0.120 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCC------CCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEe
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRI------DRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVM 129 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~------~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~ 129 (444)
|.=++|.|.||.|||..++..+.+.......+. ....+..|+|+ ....-..|+..++........... +.
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~f-SlEMs~~ql~~R~la~~s~v~~~~---i~ 292 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFF-SLEMSAEQLATRILSEQSEISSSK---IR 292 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEE-eCcCCHHHHHHHHHHHhcCCCHHH---Hh
Confidence 344788999999999887776655543311000 00124556665 444666777776655432221111 11
Q ss_pred CCcchhHHHHHh------cCCCcEEEe-----CchHHHHHHhccCccccCCccEEEEechhHhh
Q 013392 130 GGENRSKEKARL------RKGISILVA-----TPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 130 ~~~~~~~~~~~~------~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~ 182 (444)
.+.-..+++..+ ..+..+.|- |++.+...+.+... -..+++||+|=.|.+.
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~--~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR--QHGLDLLVVDYLQLIR 354 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH--hcCCCEEEEcchHhcc
Confidence 122122222211 122345553 34455444432111 1358899999999764
No 485
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=0.88 Score=45.04 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=33.9
Q ss_pred EEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcC
Q 013392 148 LVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (444)
Q Consensus 148 ii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~ 199 (444)
+=+=|.++..-+.+.+... -++++||+|.+.....++-...++.-+-.
T Consensus 400 IGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSALLEVLDP 447 (782)
T COG0466 400 IGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASALLEVLDP 447 (782)
T ss_pred cccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHHHhhcCH
Confidence 3345888888777644432 28999999999887666666677766654
No 486
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.52 E-value=0.19 Score=41.93 Aligned_cols=19 Identities=42% Similarity=0.683 Sum_probs=13.9
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 013392 55 SGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~ 73 (444)
.++++++.||.|+|||..+
T Consensus 21 G~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp CC--EEEES-CCCTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 6689999999999999754
No 487
>PF14516 AAA_35: AAA-like domain
Probab=91.49 E-value=0.39 Score=44.12 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=31.8
Q ss_pred CCH-HHHhHHHhHhc-CCcEEEEcCCCCchhHHhHHHHHHHHhc
Q 013392 42 PTK-VQAQAIPVILS-GRHVLVNAATGTGKTVAYLAPIINHLQS 83 (444)
Q Consensus 42 ~~~-~Q~~~~~~~~~-~~~~il~~~tG~GKT~~~~~~~~~~~~~ 83 (444)
.|+ ..+++++.+.+ |..+.|.+|-.+|||.. +..+.+.+..
T Consensus 15 ~R~~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~ 57 (331)
T PF14516_consen 15 ERPPAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQ 57 (331)
T ss_pred CchHHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHH
Confidence 455 88999999887 88999999999999964 4445555543
No 488
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=91.46 E-value=0.23 Score=45.61 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=43.0
Q ss_pred ccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHh----cCCcEEEEcCCCCchhHHhHHHHHH
Q 013392 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 20 ~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~----~~~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
.+--+++.+++..+ ..||.. .+..|.-++.-+. .|.-+++.++.|+|||...-+.+-.
T Consensus 371 ld~~~lp~e~~~Il-eSFGv~-~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 371 LDIKGLPNEFQDIL-ESFGVR-QRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred eecccCChHHHHHH-HHhcch-heeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 44467899999999 888987 7777776665543 5667899999999999755443333
No 489
>PRK10436 hypothetical protein; Provisional
Probab=91.41 E-value=0.32 Score=46.54 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=25.8
Q ss_pred CCHHHHhHHHhHhc--CCcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 42 PTKVQAQAIPVILS--GRHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~--~~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
+.+.|.+.+..+.. +.-++++||||||||.+. .+++..+
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 34556666666553 345789999999999754 4445544
No 490
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=91.40 E-value=0.76 Score=41.98 Aligned_cols=44 Identities=14% Similarity=-0.018 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
+.-+.+.|++|+|||..++..+.......... +.+.+++|+.--
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~g---g~~~~~~yi~te 145 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKG---GLEGKAVYIDTE 145 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccC---CCCceEEEEeCC
Confidence 34568999999999988777665544321111 123468887743
No 491
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.37 E-value=3.2 Score=41.62 Aligned_cols=22 Identities=23% Similarity=0.138 Sum_probs=16.8
Q ss_pred cEEEEcCCCCchhHHhHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~ 79 (444)
-.+++||.|.|||.++.+.+..
T Consensus 41 ayLf~Gp~G~GKtt~A~~lAk~ 62 (614)
T PRK14971 41 AYLFCGPRGVGKTTCARIFAKT 62 (614)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3699999999999866554433
No 492
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=91.30 E-value=1.1 Score=44.07 Aligned_cols=92 Identities=15% Similarity=0.183 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhcc-cccCce-EEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHH
Q 013392 303 LAVLLSILKHLFD-TEVSQK-LVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFG 380 (444)
Q Consensus 303 ~~~l~~~l~~~~~-~~~~~~-~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 380 (444)
...++.+++.+.. ...... +||.+++++.|.++++.+........ +..++.+.|+.+...+...++
T Consensus 81 ~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~------------~~~~~~i~GG~~~~~q~~~l~ 148 (513)
T COG0513 81 AAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLG------------GLRVAVVYGGVSIRKQIEALK 148 (513)
T ss_pred HHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcC------------CccEEEEECCCCHHHHHHHHh
Confidence 3445555655431 122222 99999999999999999887643210 456889999998887765554
Q ss_pred HhhcCCCcEEEEecc-----cccC-CCCCCCcEEEE
Q 013392 381 AFKTEKKALLLSTDV-----AARG-LDFPKVKCIIQ 410 (444)
Q Consensus 381 ~f~~g~~~iLi~t~~-----~~~G-~di~~~~~vi~ 410 (444)
. | .+|||+|+- +..| +|+..+..+|.
T Consensus 149 ~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 149 R---G-VDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred c---C-CCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 4 6 999999973 4555 78888888875
No 493
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.27 E-value=0.42 Score=43.89 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=33.7
Q ss_pred CCHHHHhHHHhHh-cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHH
Q 013392 42 PTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (444)
Q Consensus 42 ~~~~Q~~~~~~~~-~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L 105 (444)
+.+.+.+.+..+. .+.++++.|+||+|||.. +.+++..+ . ...+++.+-.+.++
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i-~--------~~~riv~iEd~~El 217 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALV-A--------PDERIVLVEDAAEL 217 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccC-C--------CCCcEEEECCccee
Confidence 5566777766655 567899999999999953 33333332 1 12345666555454
No 494
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.25 E-value=0.28 Score=42.14 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCchhHHhH
Q 013392 57 RHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~ 74 (444)
.-+|++|+|||||+.+..
T Consensus 128 GLviiVGaTGSGKSTtmA 145 (375)
T COG5008 128 GLVIIVGATGSGKSTTMA 145 (375)
T ss_pred ceEEEECCCCCCchhhHH
Confidence 347999999999996533
No 495
>PRK07004 replicative DNA helicase; Provisional
Probab=91.19 E-value=2.2 Score=41.20 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=58.0
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcch
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (444)
.|.=+++.|.||+|||..++..+.+.... .+..++|+. ...-..|...++-........ ..+..|...
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~--------~~~~v~~fS-lEM~~~ql~~R~la~~~~v~~---~~i~~g~l~ 279 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVE--------YGLPVAVFS-MEMPGTQLAMRMLGSVGRLDQ---HRMRTGRLT 279 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHH--------cCCeEEEEe-CCCCHHHHHHHHHHhhcCCCH---HHHhcCCCC
Confidence 45557889999999998777665554432 133466554 445566666555432221111 111112222
Q ss_pred hHHHHHh------cCCCcEEEe-----CchHHHHHHhccCccccCCccEEEEechhHhh
Q 013392 135 SKEKARL------RKGISILVA-----TPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 135 ~~~~~~~------~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~ 182 (444)
.+++..+ ..+..+.|. |+..+.....+... ....+++||+|=.+.+.
T Consensus 280 ~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~-~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 280 DEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLAR-QCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEChhhhcc
Confidence 2222211 123456663 33344443332111 11257899999999764
No 496
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=91.16 E-value=1.4 Score=38.86 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=34.3
Q ss_pred cEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhh
Q 013392 171 RWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKIS 236 (444)
Q Consensus 171 ~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~ 236 (444)
.+.||||++.|-. +..+.+.-++...+. ......++.-.|++|.+-...+..+....
T Consensus 180 slFIFDE~DKmp~-gLld~lkpfLdyyp~--------v~gv~frkaIFIfLSN~gg~eI~~~aL~~ 236 (344)
T KOG2170|consen 180 SLFIFDEVDKLPP-GLLDVLKPFLDYYPQ--------VSGVDFRKAIFIFLSNAGGSEIARIALEN 236 (344)
T ss_pred ceEEechhhhcCH-hHHHHHhhhhccccc--------cccccccceEEEEEcCCcchHHHHHHHHH
Confidence 4899999997533 355555555554322 11122336677889988777666544433
No 497
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=91.04 E-value=0.72 Score=40.00 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=28.1
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
.|.-+.+.|++|+|||..++..+........- .+.+.+++++.-.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~---~g~~~~viyi~~e 62 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIEL---GGLEGKAVYIDTE 62 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCcccc---CCCCccEEEEeCC
Confidence 34567999999999998777665543322100 0123568888754
No 498
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=90.99 E-value=3.3 Score=33.92 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=23.5
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
+++.-..|=|||.+++=.++..+ +.+.+++|+-
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~---------GhG~rv~vvQ 63 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL---------GHGLRVGVVQ 63 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh---------cCCCEEEEEE
Confidence 56667777899988777777766 4566777664
No 499
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.97 E-value=0.87 Score=47.75 Aligned_cols=81 Identities=12% Similarity=0.165 Sum_probs=68.9
Q ss_pred ccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEec-c
Q 013392 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD-V 395 (444)
Q Consensus 317 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~-~ 395 (444)
..+..+.|.+++.-.|++.++.++++..+. .+++..++.-.+..++..+++...+|.++|+|+|- .
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~f-------------PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrL 707 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGF-------------PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRL 707 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCC-------------CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHh
Confidence 346799999999999999999998874421 45677788888999999999999999999999997 5
Q ss_pred cccCCCCCCCcEEEE
Q 013392 396 AARGLDFPKVKCIIQ 410 (444)
Q Consensus 396 ~~~G~di~~~~~vi~ 410 (444)
++.++-+.++..+|+
T Consensus 708 L~kdv~FkdLGLlII 722 (1139)
T COG1197 708 LSKDVKFKDLGLLII 722 (1139)
T ss_pred hCCCcEEecCCeEEE
Confidence 678888899999885
No 500
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.84 E-value=0.41 Score=40.69 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=27.9
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
.|.-+.+.||+|+|||..++..+.+.... +.+++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~---------g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ---------GKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEECC
Confidence 34567999999999998887666554422 4557777664
Done!