Query 013392
Match_columns 444
No_of_seqs 134 out of 1317
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 09:43:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.2E-56 4.2E-61 425.9 39.5 350 18-441 56-405 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 4.6E-54 1.6E-58 408.9 36.7 357 16-441 13-381 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 8.1E-54 2.8E-58 406.1 35.1 347 15-441 34-381 (410)
4 1xti_A Probable ATP-dependent 100.0 6.3E-53 2.1E-57 397.7 37.3 348 16-441 6-355 (391)
5 1s2m_A Putative ATP-dependent 100.0 7.7E-53 2.6E-57 398.1 37.3 346 15-441 18-363 (400)
6 3fht_A ATP-dependent RNA helic 100.0 2.2E-52 7.5E-57 396.8 35.2 353 8-441 15-377 (412)
7 1hv8_A Putative ATP-dependent 100.0 5.9E-52 2E-56 387.8 36.4 340 15-441 3-343 (367)
8 3eiq_A Eukaryotic initiation f 100.0 2.3E-52 8E-57 396.9 32.4 345 17-441 39-385 (414)
9 3pey_A ATP-dependent RNA helic 100.0 5.8E-51 2E-55 385.0 36.2 341 17-441 4-354 (395)
10 3sqw_A ATP-dependent RNA helic 100.0 3.8E-51 1.3E-55 402.6 33.2 371 15-441 14-396 (579)
11 1fuu_A Yeast initiation factor 100.0 3E-52 1E-56 393.5 22.3 346 15-441 18-364 (394)
12 3i5x_A ATP-dependent RNA helic 100.0 1.1E-50 3.8E-55 399.5 33.3 369 17-441 67-447 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 3.1E-52 1.1E-56 402.2 20.2 349 12-441 86-444 (479)
14 2z0m_A 337AA long hypothetical 100.0 8.5E-49 2.9E-53 362.0 35.8 321 25-441 1-321 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 1.4E-47 4.8E-52 373.5 32.4 335 17-440 20-371 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 1.6E-47 5.4E-52 369.8 28.0 328 18-440 2-340 (523)
17 3fho_A ATP-dependent RNA helic 100.0 2.3E-48 7.8E-53 376.0 21.2 339 19-441 120-468 (508)
18 3oiy_A Reverse gyrase helicase 100.0 3.1E-46 1.1E-50 353.9 25.3 325 27-440 8-362 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 2E-43 6.9E-48 356.4 32.8 366 15-439 5-404 (715)
20 2zj8_A DNA helicase, putative 100.0 1E-43 3.4E-48 358.3 28.9 356 18-439 1-383 (720)
21 3l9o_A ATP-dependent RNA helic 100.0 5.1E-44 1.7E-48 369.5 26.0 386 17-441 161-593 (1108)
22 4a2p_A RIG-I, retinoic acid in 100.0 9.8E-44 3.3E-48 350.5 26.3 376 40-440 6-505 (556)
23 3tbk_A RIG-I helicase domain; 100.0 5.3E-43 1.8E-47 345.3 28.7 380 39-441 3-505 (555)
24 2ykg_A Probable ATP-dependent 100.0 2.1E-43 7.3E-48 356.4 25.8 378 31-440 4-513 (696)
25 2p6r_A Afuhel308 helicase; pro 100.0 1.4E-43 4.8E-48 356.2 24.2 360 18-439 1-384 (702)
26 4a2q_A RIG-I, retinoic acid in 100.0 3.8E-43 1.3E-47 357.4 27.5 383 36-441 243-747 (797)
27 1wp9_A ATP-dependent RNA helic 100.0 2.1E-42 7.1E-47 336.0 29.3 354 41-441 9-473 (494)
28 2xgj_A ATP-dependent RNA helic 100.0 1.7E-41 5.9E-46 347.8 33.1 364 34-440 80-496 (1010)
29 4ddu_A Reverse gyrase; topoiso 100.0 5.7E-42 1.9E-46 354.2 27.7 300 27-415 65-388 (1104)
30 4a2w_A RIG-I, retinoic acid in 100.0 7E-42 2.4E-46 351.2 25.9 382 36-440 243-746 (936)
31 2eyq_A TRCF, transcription-rep 100.0 3.5E-40 1.2E-44 343.1 33.6 324 22-440 585-919 (1151)
32 4gl2_A Interferon-induced heli 100.0 2.9E-42 1E-46 348.3 14.7 380 38-440 5-515 (699)
33 1gm5_A RECG; helicase, replica 100.0 5.3E-41 1.8E-45 333.7 21.9 320 27-440 355-694 (780)
34 4a4z_A Antiviral helicase SKI2 100.0 2.2E-40 7.5E-45 339.7 26.7 368 33-442 32-489 (997)
35 4f92_B U5 small nuclear ribonu 100.0 9.5E-40 3.2E-44 348.9 31.8 379 5-442 891-1305(1724)
36 1tf5_A Preprotein translocase 100.0 4.2E-40 1.4E-44 320.6 26.4 363 36-441 79-543 (844)
37 1gku_B Reverse gyrase, TOP-RG; 100.0 3.2E-41 1.1E-45 349.0 19.0 324 28-441 45-452 (1054)
38 2oca_A DAR protein, ATP-depend 100.0 3.6E-40 1.2E-44 320.7 20.6 336 41-439 113-451 (510)
39 4f92_B U5 small nuclear ribonu 100.0 1.6E-38 5.5E-43 339.5 28.0 355 38-442 76-470 (1724)
40 1nkt_A Preprotein translocase 100.0 3.7E-38 1.3E-42 306.4 26.5 367 32-441 103-615 (922)
41 2fsf_A Preprotein translocase 100.0 1.4E-38 4.7E-43 309.1 23.2 373 33-441 67-581 (853)
42 2fwr_A DNA repair protein RAD2 100.0 3.2E-39 1.1E-43 311.0 16.5 322 41-438 93-447 (472)
43 3h1t_A Type I site-specific re 100.0 5.4E-38 1.8E-42 310.2 19.0 359 41-443 178-557 (590)
44 2xau_A PRE-mRNA-splicing facto 100.0 4.9E-37 1.7E-41 307.5 25.0 348 13-440 67-440 (773)
45 2jlq_A Serine protease subunit 100.0 6.3E-38 2.1E-42 298.0 14.1 285 38-439 1-307 (451)
46 2whx_A Serine protease/ntpase/ 100.0 7.4E-38 2.5E-42 305.9 8.7 300 23-440 155-475 (618)
47 3dmq_A RNA polymerase-associat 100.0 2.7E-36 9.3E-41 310.2 20.3 353 41-440 153-610 (968)
48 1z63_A Helicase of the SNF2/RA 100.0 2.1E-35 7.1E-40 286.5 21.7 341 41-437 37-445 (500)
49 3o8b_A HCV NS3 protease/helica 100.0 4.3E-36 1.5E-40 290.3 14.9 281 33-440 210-511 (666)
50 2wv9_A Flavivirin protease NS2 100.0 1.7E-36 5.6E-41 298.1 10.5 284 41-440 215-530 (673)
51 1yks_A Genome polyprotein [con 100.0 2.4E-36 8.2E-41 285.7 9.3 264 52-440 4-296 (440)
52 1vec_A ATP-dependent RNA helic 100.0 1.4E-33 4.7E-38 240.7 25.5 204 17-243 2-205 (206)
53 3fe2_A Probable ATP-dependent 100.0 9.5E-34 3.3E-38 247.5 24.2 214 16-248 27-240 (242)
54 2z83_A Helicase/nucleoside tri 100.0 3E-36 1E-40 286.9 8.9 276 50-441 15-311 (459)
55 3ber_A Probable ATP-dependent 100.0 2.3E-33 7.7E-38 245.5 25.1 208 15-245 40-247 (249)
56 2gxq_A Heat resistant RNA depe 100.0 3.9E-33 1.3E-37 238.2 24.1 205 18-245 1-205 (207)
57 3iuy_A Probable ATP-dependent 100.0 2E-33 6.9E-38 243.5 22.4 211 15-244 16-227 (228)
58 1q0u_A Bstdead; DEAD protein, 100.0 2.1E-33 7E-38 241.7 21.3 209 18-249 4-215 (219)
59 3mwy_W Chromo domain-containin 100.0 1.4E-33 4.7E-38 286.2 23.4 348 41-438 236-677 (800)
60 2v6i_A RNA helicase; membrane, 100.0 5.4E-34 1.8E-38 269.1 19.0 266 55-436 1-283 (431)
61 2oxc_A Probable ATP-dependent 100.0 6.8E-33 2.3E-37 240.2 24.4 207 15-245 21-228 (230)
62 3fmo_B ATP-dependent RNA helic 100.0 4.6E-33 1.6E-37 249.8 22.0 210 12-246 86-298 (300)
63 3bor_A Human initiation factor 100.0 7.5E-33 2.6E-37 240.9 22.4 206 17-246 29-235 (237)
64 2pl3_A Probable ATP-dependent 100.0 1.9E-32 6.6E-37 238.6 24.9 213 15-247 22-234 (236)
65 1z3i_X Similar to RAD54-like; 100.0 3.3E-32 1.1E-36 269.4 28.0 353 41-437 55-520 (644)
66 1t6n_A Probable ATP-dependent 100.0 3.1E-32 1.1E-36 234.7 24.0 205 17-244 13-219 (220)
67 1qde_A EIF4A, translation init 100.0 2.8E-32 9.7E-37 235.7 23.6 207 17-248 13-219 (224)
68 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 5.7E-33 1.9E-37 283.1 22.2 354 41-443 271-705 (1038)
69 3ly5_A ATP-dependent RNA helic 100.0 2E-32 6.7E-37 241.5 22.4 208 15-241 49-258 (262)
70 1wrb_A DJVLGB; RNA helicase, D 100.0 3.3E-32 1.1E-36 239.7 21.5 219 16-248 21-242 (253)
71 3jux_A Protein translocase sub 100.0 5E-31 1.7E-35 251.1 28.1 341 31-441 66-585 (822)
72 3rc3_A ATP-dependent RNA helic 100.0 6.5E-32 2.2E-36 264.6 22.1 267 51-433 150-432 (677)
73 3dkp_A Probable ATP-dependent 100.0 1.8E-31 6.3E-36 233.8 19.1 211 17-248 24-243 (245)
74 2ipc_A Preprotein translocase 100.0 7.5E-26 2.6E-30 219.7 30.8 139 30-183 69-216 (997)
75 1c4o_A DNA nucleotide excision 99.9 1.4E-25 4.7E-30 221.7 28.4 120 301-440 423-547 (664)
76 2d7d_A Uvrabc system protein B 99.9 6.5E-24 2.2E-28 209.7 30.2 120 301-440 429-553 (661)
77 2hjv_A ATP-dependent RNA helic 99.9 1.8E-25 6.2E-30 182.0 13.7 134 287-441 7-140 (163)
78 1t5i_A C_terminal domain of A 99.9 2E-25 6.9E-30 183.1 11.3 134 287-441 3-136 (172)
79 1fuk_A Eukaryotic initiation f 99.9 8.5E-25 2.9E-29 178.5 15.0 133 288-441 2-135 (165)
80 2p6n_A ATP-dependent RNA helic 99.9 2.6E-25 9E-30 185.2 11.5 133 287-441 27-159 (191)
81 2jgn_A DBX, DDX3, ATP-dependen 99.9 4.2E-25 1.4E-29 183.3 11.2 136 286-441 16-151 (185)
82 2rb4_A ATP-dependent RNA helic 99.9 8.9E-25 3.1E-29 180.3 12.0 134 287-441 5-145 (175)
83 3eaq_A Heat resistant RNA depe 99.9 3.9E-24 1.3E-28 181.7 13.2 132 289-441 5-136 (212)
84 3b6e_A Interferon-induced heli 99.9 5.3E-24 1.8E-28 182.8 12.2 180 38-224 30-216 (216)
85 3i32_A Heat resistant RNA depe 99.9 2.3E-23 7.9E-28 184.9 13.0 131 290-441 3-133 (300)
86 2yjt_D ATP-dependent RNA helic 99.8 7.9E-25 2.7E-29 179.6 0.0 132 289-441 3-135 (170)
87 1rif_A DAR protein, DNA helica 99.9 7.4E-22 2.5E-26 176.2 12.9 158 41-233 113-270 (282)
88 2vl7_A XPD; helicase, unknown 99.9 6.4E-21 2.2E-25 184.8 18.8 68 36-116 3-74 (540)
89 3llm_A ATP-dependent RNA helic 99.8 4.7E-20 1.6E-24 159.7 17.9 169 41-240 61-231 (235)
90 3crv_A XPD/RAD3 related DNA he 99.8 3.1E-19 1.1E-23 173.7 24.9 132 38-183 1-187 (551)
91 2fz4_A DNA repair protein RAD2 99.8 1.2E-19 4E-24 156.8 11.4 139 41-228 93-231 (237)
92 1z5z_A Helicase of the SNF2/RA 99.8 2E-18 6.8E-23 151.5 11.6 123 297-437 92-216 (271)
93 4a15_A XPD helicase, ATP-depen 99.8 7.8E-17 2.7E-21 157.9 22.3 70 41-118 3-76 (620)
94 1w36_D RECD, exodeoxyribonucle 98.8 4.4E-08 1.5E-12 96.0 12.1 85 28-119 136-222 (608)
95 4b3f_X DNA-binding protein smu 98.5 3.4E-07 1.2E-11 90.8 9.4 67 41-116 189-256 (646)
96 3e1s_A Exodeoxyribonuclease V, 98.4 2.3E-06 7.8E-11 83.0 12.8 65 38-112 187-251 (574)
97 3upu_A ATP-dependent DNA helic 98.3 3E-06 1E-10 80.4 12.0 69 37-113 21-94 (459)
98 2gk6_A Regulator of nonsense t 98.3 3.4E-06 1.2E-10 83.1 12.5 70 39-116 178-247 (624)
99 2xzl_A ATP-dependent helicase 98.3 4.8E-06 1.6E-10 83.9 11.9 70 39-116 358-427 (802)
100 2wjy_A Regulator of nonsense t 98.2 7.8E-06 2.7E-10 82.3 11.6 69 40-116 355-423 (800)
101 3hgt_A HDA1 complex subunit 3; 98.0 2.7E-05 9.2E-10 68.4 10.0 111 297-431 105-221 (328)
102 2o0j_A Terminase, DNA packagin 97.9 0.00029 1E-08 64.2 14.5 75 38-120 161-235 (385)
103 3cpe_A Terminase, DNA packagin 97.7 0.0012 4E-08 64.7 17.1 73 42-121 164-236 (592)
104 3lfu_A DNA helicase II; SF1 he 97.3 0.00061 2.1E-08 67.7 8.8 72 40-118 8-79 (647)
105 3ec2_A DNA replication protein 97.2 0.0024 8.2E-08 51.8 10.3 21 55-75 37-57 (180)
106 2j9r_A Thymidine kinase; TK1, 97.2 0.00079 2.7E-08 55.5 7.1 39 57-104 29-67 (214)
107 1w4r_A Thymidine kinase; type 97.1 0.0024 8.1E-08 51.8 9.0 38 56-102 20-57 (195)
108 1xx6_A Thymidine kinase; NESG, 97.1 0.0014 4.9E-08 53.5 7.8 39 56-103 8-46 (191)
109 1a5t_A Delta prime, HOLB; zinc 97.1 0.0076 2.6E-07 54.3 13.1 39 42-80 3-48 (334)
110 2orw_A Thymidine kinase; TMTK, 97.1 0.00027 9.1E-09 57.7 2.9 39 56-103 3-41 (184)
111 2b8t_A Thymidine kinase; deoxy 97.0 0.0006 2E-08 57.2 5.0 90 55-180 11-100 (223)
112 3e2i_A Thymidine kinase; Zn-bi 97.0 0.00065 2.2E-08 55.9 4.8 41 55-104 27-67 (219)
113 3te6_A Regulatory protein SIR3 96.9 0.0094 3.2E-07 52.8 11.9 26 55-81 44-69 (318)
114 3vkw_A Replicase large subunit 96.9 0.002 6.8E-08 59.5 7.5 83 58-180 163-245 (446)
115 1pjr_A PCRA; DNA repair, DNA r 96.9 0.0033 1.1E-07 63.1 9.4 72 40-118 10-81 (724)
116 1uaa_A REP helicase, protein ( 96.8 0.0023 7.9E-08 63.8 7.7 71 41-118 2-72 (673)
117 1l8q_A Chromosomal replication 96.7 0.017 5.7E-07 51.8 12.2 20 56-75 37-56 (324)
118 3h4m_A Proteasome-activating n 96.7 0.0061 2.1E-07 53.5 9.0 58 15-75 11-70 (285)
119 3u61_B DNA polymerase accessor 96.7 0.013 4.6E-07 52.4 11.1 29 169-197 105-133 (324)
120 2zpa_A Uncharacterized protein 96.6 0.0028 9.6E-08 61.7 6.5 101 41-195 175-277 (671)
121 3u4q_A ATP-dependent helicase/ 96.5 0.0056 1.9E-07 65.3 8.9 76 37-118 7-82 (1232)
122 2kjq_A DNAA-related protein; s 96.5 0.0027 9.3E-08 49.6 4.8 21 55-75 35-55 (149)
123 2z4s_A Chromosomal replication 96.4 0.032 1.1E-06 52.2 12.4 19 57-75 131-149 (440)
124 2orv_A Thymidine kinase; TP4A 96.4 0.004 1.4E-07 51.9 5.2 40 56-104 19-58 (234)
125 3eie_A Vacuolar protein sortin 96.3 0.011 3.6E-07 53.1 8.3 60 13-76 10-71 (322)
126 4b4t_M 26S protease regulatory 96.3 0.0088 3E-07 55.4 7.8 60 15-77 175-236 (434)
127 4b4t_J 26S protease regulatory 96.3 0.014 4.7E-07 53.3 8.9 58 16-77 143-203 (405)
128 1d2n_A N-ethylmaleimide-sensit 96.3 0.047 1.6E-06 47.4 11.8 21 57-77 65-85 (272)
129 2chg_A Replication factor C sm 96.3 0.062 2.1E-06 44.7 12.3 19 57-75 39-57 (226)
130 2w58_A DNAI, primosome compone 96.2 0.08 2.7E-06 43.5 12.3 19 57-75 55-73 (202)
131 3cf0_A Transitional endoplasmi 96.0 0.034 1.1E-06 49.2 9.6 58 15-75 9-68 (301)
132 2v1u_A Cell division control p 96.0 0.052 1.8E-06 49.7 11.3 22 55-76 43-64 (387)
133 2qby_B CDC6 homolog 3, cell di 95.9 0.039 1.3E-06 50.7 10.2 21 56-76 45-65 (384)
134 1jbk_A CLPB protein; beta barr 95.9 0.11 3.7E-06 42.0 11.8 21 56-76 43-63 (195)
135 3hu3_A Transitional endoplasmi 95.7 0.059 2E-06 51.0 10.6 59 14-75 197-257 (489)
136 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.065 2.2E-06 46.1 10.2 56 18-76 3-59 (262)
137 3bos_A Putative DNA replicatio 95.7 0.039 1.3E-06 46.7 8.4 21 55-75 51-71 (242)
138 4b4t_K 26S protease regulatory 95.6 0.11 3.6E-06 48.1 11.6 59 16-77 167-227 (428)
139 2gno_A DNA polymerase III, gam 95.5 0.12 4E-06 45.7 11.1 20 58-77 20-39 (305)
140 2qp9_X Vacuolar protein sortin 95.3 0.061 2.1E-06 48.8 8.7 59 15-77 45-105 (355)
141 1iqp_A RFCS; clamp loader, ext 95.3 0.12 4.1E-06 46.0 10.7 18 58-75 48-65 (327)
142 3vfd_A Spastin; ATPase, microt 95.3 0.13 4.3E-06 47.4 10.9 21 56-76 148-168 (389)
143 2qby_A CDC6 homolog 1, cell di 95.3 0.22 7.4E-06 45.5 12.6 20 56-75 45-64 (386)
144 1g5t_A COB(I)alamin adenosyltr 95.2 0.11 3.9E-06 42.0 9.0 36 56-100 28-63 (196)
145 1sxj_B Activator 1 37 kDa subu 95.2 0.086 2.9E-06 46.9 9.3 19 58-76 44-62 (323)
146 2w0m_A SSO2452; RECA, SSPF, un 95.1 0.11 3.7E-06 43.7 9.4 25 55-79 22-46 (235)
147 3kl4_A SRP54, signal recogniti 95.0 0.33 1.1E-05 44.9 12.8 53 168-235 178-233 (433)
148 1sxj_E Activator 1 40 kDa subu 94.9 0.26 9E-06 44.4 11.9 48 15-75 8-55 (354)
149 3pvs_A Replication-associated 94.9 0.027 9.1E-07 52.8 5.3 19 57-75 51-69 (447)
150 3syl_A Protein CBBX; photosynt 94.8 0.19 6.4E-06 44.4 10.5 20 57-76 68-87 (309)
151 3d8b_A Fidgetin-like protein 1 94.8 0.086 2.9E-06 47.8 8.4 21 56-76 117-137 (357)
152 3pfi_A Holliday junction ATP-d 94.8 0.18 6.3E-06 45.2 10.6 19 57-75 56-74 (338)
153 2q6t_A DNAB replication FORK h 94.8 0.21 7.2E-06 46.8 11.1 51 55-114 199-249 (444)
154 2dr3_A UPF0273 protein PH0284; 94.7 0.16 5.4E-06 43.1 9.4 51 55-115 22-72 (247)
155 2zan_A Vacuolar protein sortin 94.7 0.043 1.5E-06 51.5 6.0 57 15-75 128-186 (444)
156 3io5_A Recombination and repai 94.7 0.053 1.8E-06 47.6 6.1 91 58-182 30-124 (333)
157 1fnn_A CDC6P, cell division co 94.6 0.11 3.9E-06 47.5 8.7 18 58-75 46-63 (389)
158 1njg_A DNA polymerase III subu 94.5 0.37 1.3E-05 40.4 11.3 19 58-76 47-65 (250)
159 1sxj_C Activator 1 40 kDa subu 94.5 0.22 7.4E-06 44.8 10.1 18 59-76 49-66 (340)
160 3dm5_A SRP54, signal recogniti 94.4 0.86 2.9E-05 42.2 13.9 34 58-100 102-135 (443)
161 1sxj_D Activator 1 41 kDa subu 94.3 0.38 1.3E-05 43.3 11.4 20 57-76 59-78 (353)
162 3cf2_A TER ATPase, transitiona 94.1 0.042 1.4E-06 55.0 4.9 60 15-75 471-530 (806)
163 1gm5_A RECG; helicase, replica 94.1 0.16 5.3E-06 51.1 8.9 99 299-412 399-498 (780)
164 2r6a_A DNAB helicase, replicat 94.1 0.32 1.1E-05 45.7 10.6 50 55-113 202-251 (454)
165 4a1f_A DNAB helicase, replicat 94.0 0.12 4.2E-06 46.1 7.2 51 55-115 45-95 (338)
166 2chq_A Replication factor C sm 94.0 0.23 8E-06 43.9 9.2 48 15-76 11-58 (319)
167 1xp8_A RECA protein, recombina 93.6 0.13 4.6E-06 46.5 6.8 45 49-102 61-111 (366)
168 3cmu_A Protein RECA, recombina 93.5 0.11 3.8E-06 57.1 6.9 47 50-105 1415-1467(2050)
169 2fna_A Conserved hypothetical 93.3 4.1 0.00014 36.3 16.4 32 43-75 18-49 (357)
170 2zr9_A Protein RECA, recombina 93.2 0.082 2.8E-06 47.7 4.7 45 49-102 48-98 (349)
171 3hjh_A Transcription-repair-co 93.2 0.23 7.8E-06 46.8 7.8 52 55-118 13-64 (483)
172 2ehv_A Hypothetical protein PH 93.1 0.3 1E-05 41.4 8.1 24 54-77 28-51 (251)
173 2cvh_A DNA repair and recombin 93.0 0.43 1.5E-05 39.5 8.6 24 55-78 19-42 (220)
174 1u94_A RECA protein, recombina 92.9 0.081 2.8E-06 47.8 4.2 45 49-102 50-100 (356)
175 3hr8_A Protein RECA; alpha and 92.9 0.079 2.7E-06 47.7 4.1 49 48-105 47-101 (356)
176 4b4t_L 26S protease subunit RP 92.9 0.099 3.4E-06 48.4 4.8 60 15-77 175-236 (437)
177 1w5s_A Origin recognition comp 92.8 0.8 2.7E-05 42.2 11.1 19 57-75 51-71 (412)
178 3n70_A Transport activator; si 92.6 0.094 3.2E-06 40.5 3.7 21 54-74 22-42 (145)
179 1n0w_A DNA repair protein RAD5 92.6 0.45 1.5E-05 40.1 8.4 25 55-79 23-47 (243)
180 3co5_A Putative two-component 92.5 0.085 2.9E-06 40.6 3.3 20 54-73 25-44 (143)
181 4b4t_H 26S protease regulatory 92.3 0.14 4.7E-06 47.5 4.9 59 16-77 204-264 (467)
182 1jr3_A DNA polymerase III subu 92.1 1.8 6.2E-05 39.1 12.3 19 58-76 40-58 (373)
183 1tue_A Replication protein E1; 91.7 0.24 8.4E-06 40.4 5.2 46 27-75 28-77 (212)
184 2qgz_A Helicase loader, putati 91.6 0.32 1.1E-05 43.0 6.4 24 56-79 152-175 (308)
185 2z43_A DNA repair and recombin 91.4 0.67 2.3E-05 41.2 8.3 57 56-115 107-164 (324)
186 4b4t_I 26S protease regulatory 90.9 0.22 7.5E-06 45.7 4.7 60 15-77 176-237 (437)
187 3oiy_A Reverse gyrase helicase 90.9 0.63 2.1E-05 43.0 7.9 82 317-412 62-147 (414)
188 1v5w_A DMC1, meiotic recombina 89.9 0.87 3E-05 40.9 7.7 44 57-103 123-166 (343)
189 1xwi_A SKD1 protein; VPS4B, AA 89.5 0.28 9.5E-06 43.7 4.0 57 15-75 6-64 (322)
190 1p9r_A General secretion pathw 89.3 0.63 2.2E-05 42.9 6.4 37 44-81 153-191 (418)
191 3cf2_A TER ATPase, transitiona 89.2 0.62 2.1E-05 46.8 6.6 57 15-74 198-256 (806)
192 2l8b_A Protein TRAI, DNA helic 88.7 0.87 3E-05 36.2 5.8 57 44-108 37-95 (189)
193 3hws_A ATP-dependent CLP prote 88.7 0.92 3.1E-05 41.1 7.0 22 55-76 50-71 (363)
194 1u0j_A DNA replication protein 88.5 0.63 2.2E-05 39.8 5.3 45 27-75 73-123 (267)
195 3nbx_X ATPase RAVA; AAA+ ATPas 88.4 0.49 1.7E-05 44.8 5.1 28 47-74 32-59 (500)
196 3lda_A DNA repair protein RAD5 87.7 2.3 8E-05 38.9 9.0 44 56-102 178-221 (400)
197 2eyq_A TRCF, transcription-rep 87.6 1.2 4.1E-05 47.1 7.9 80 318-410 651-731 (1151)
198 1t6n_A Probable ATP-dependent 87.5 5 0.00017 32.9 10.4 97 300-411 62-165 (220)
199 1q57_A DNA primase/helicase; d 87.5 0.76 2.6E-05 43.8 5.9 51 55-114 241-291 (503)
200 2r8r_A Sensor protein; KDPD, P 87.1 0.76 2.6E-05 38.2 4.8 26 58-83 8-33 (228)
201 2p65_A Hypothetical protein PF 86.9 0.54 1.8E-05 37.5 3.9 22 56-77 43-64 (187)
202 2zts_A Putative uncharacterize 86.8 0.42 1.4E-05 40.5 3.4 52 56-116 30-81 (251)
203 3b85_A Phosphate starvation-in 86.8 0.83 2.8E-05 37.6 5.0 36 38-73 4-39 (208)
204 1ofh_A ATP-dependent HSL prote 86.7 1 3.6E-05 39.4 6.1 20 56-75 50-69 (310)
205 4ddu_A Reverse gyrase; topoiso 86.6 1.9 6.4E-05 45.3 8.7 98 299-412 103-204 (1104)
206 2r62_A Cell division protease 86.3 0.24 8.3E-06 42.7 1.6 57 16-76 6-64 (268)
207 2x8a_A Nuclear valosin-contain 86.1 0.22 7.5E-06 43.2 1.2 55 16-74 5-62 (274)
208 3bh0_A DNAB-like replicative h 86.1 1.5 5.1E-05 38.8 6.6 52 55-116 67-118 (315)
209 1w36_B RECB, exodeoxyribonucle 86.0 1.5 5.3E-05 46.5 7.7 61 58-118 18-81 (1180)
210 1e9r_A Conjugal transfer prote 85.7 1 3.6E-05 41.9 5.7 44 55-107 52-95 (437)
211 2qmh_A HPR kinase/phosphorylas 85.6 0.45 1.5E-05 38.6 2.7 21 55-75 33-53 (205)
212 2r44_A Uncharacterized protein 85.5 0.53 1.8E-05 42.0 3.5 25 51-75 41-65 (331)
213 3jvv_A Twitching mobility prot 85.2 0.71 2.4E-05 41.6 4.1 26 55-81 122-147 (356)
214 2px0_A Flagellar biosynthesis 85.1 1 3.4E-05 39.4 5.0 25 56-80 105-129 (296)
215 1vec_A ATP-dependent RNA helic 85.1 6.1 0.00021 31.9 9.6 95 300-410 51-152 (206)
216 3a8t_A Adenylate isopentenyltr 85.0 0.48 1.6E-05 42.1 2.8 21 57-77 41-61 (339)
217 3cmw_A Protein RECA, recombina 84.9 0.85 2.9E-05 49.6 5.1 92 56-183 1431-1523(1706)
218 4ag6_A VIRB4 ATPase, type IV s 84.8 1.1 3.9E-05 40.9 5.5 41 55-104 34-74 (392)
219 2bjv_A PSP operon transcriptio 84.8 0.85 2.9E-05 39.1 4.3 20 55-74 28-47 (265)
220 3bor_A Human initiation factor 84.3 2.3 7.7E-05 35.7 6.7 94 301-410 79-179 (237)
221 3vaa_A Shikimate kinase, SK; s 84.0 0.82 2.8E-05 37.2 3.7 22 55-76 24-45 (199)
222 3trf_A Shikimate kinase, SK; a 84.0 0.8 2.7E-05 36.7 3.6 21 56-76 5-25 (185)
223 3t15_A Ribulose bisphosphate c 83.7 0.68 2.3E-05 40.5 3.2 21 57-77 37-57 (293)
224 3foz_A TRNA delta(2)-isopenten 83.2 0.76 2.6E-05 40.2 3.3 20 58-77 12-31 (316)
225 1kgd_A CASK, peripheral plasma 83.1 0.78 2.7E-05 36.7 3.2 19 55-73 4-22 (180)
226 3ber_A Probable ATP-dependent 83.1 5.7 0.00019 33.5 8.8 95 300-411 91-193 (249)
227 3exa_A TRNA delta(2)-isopenten 83.0 0.66 2.3E-05 40.7 2.8 20 57-76 4-23 (322)
228 2ewv_A Twitching motility prot 83.0 0.94 3.2E-05 41.1 4.0 20 54-73 134-153 (372)
229 2oap_1 GSPE-2, type II secreti 83.0 1.1 3.7E-05 42.7 4.5 31 42-72 245-276 (511)
230 2oxc_A Probable ATP-dependent 82.8 4.3 0.00015 33.7 7.9 94 300-410 72-172 (230)
231 3b9p_A CG5977-PA, isoform A; A 82.8 0.75 2.6E-05 40.2 3.2 58 15-75 15-73 (297)
232 3iij_A Coilin-interacting nucl 81.8 1 3.5E-05 35.9 3.4 21 55-75 10-30 (180)
233 4dzz_A Plasmid partitioning pr 81.6 4.2 0.00014 32.9 7.2 31 61-100 7-37 (206)
234 3tau_A Guanylate kinase, GMP k 81.6 0.94 3.2E-05 37.2 3.2 20 55-74 7-26 (208)
235 2eyu_A Twitching motility prot 81.4 0.8 2.7E-05 39.2 2.7 20 54-73 23-42 (261)
236 2ze6_A Isopentenyl transferase 81.4 1 3.5E-05 38.3 3.4 19 58-76 3-21 (253)
237 4akg_A Glutathione S-transfera 81.4 3.3 0.00011 47.5 8.2 47 27-75 892-942 (2695)
238 1lv7_A FTSH; alpha/beta domain 81.4 1 3.5E-05 38.4 3.4 58 15-75 6-64 (257)
239 2qor_A Guanylate kinase; phosp 81.3 1.1 3.6E-05 36.7 3.4 23 53-75 9-31 (204)
240 3uk6_A RUVB-like 2; hexameric 81.3 0.93 3.2E-05 41.0 3.3 20 57-76 71-90 (368)
241 3lw7_A Adenylate kinase relate 81.3 0.7 2.4E-05 36.5 2.2 18 58-75 3-20 (179)
242 1ojl_A Transcriptional regulat 81.1 1 3.5E-05 39.6 3.4 21 55-75 24-44 (304)
243 3vkg_A Dynein heavy chain, cyt 81.1 3 0.0001 48.5 7.7 48 26-75 874-925 (3245)
244 3nwn_A Kinesin-like protein KI 80.9 1.1 3.8E-05 40.2 3.6 25 49-73 96-122 (359)
245 1oyw_A RECQ helicase, ATP-depe 80.8 2.8 9.6E-05 40.0 6.6 59 319-394 65-123 (523)
246 1qhx_A CPT, protein (chloramph 80.6 1.1 3.6E-05 35.6 3.1 20 56-75 3-22 (178)
247 3ly5_A ATP-dependent RNA helic 80.6 12 0.0004 31.8 9.9 76 318-410 125-207 (262)
248 1lvg_A Guanylate kinase, GMP k 80.6 1.1 3.7E-05 36.5 3.1 19 55-73 3-21 (198)
249 1y63_A LMAJ004144AAA protein; 80.5 1.2 4.3E-05 35.6 3.5 21 55-75 9-29 (184)
250 3bgw_A DNAB-like replicative h 80.5 1.6 5.4E-05 40.7 4.6 51 55-115 196-246 (444)
251 1um8_A ATP-dependent CLP prote 80.2 1.2 4.2E-05 40.4 3.7 20 56-75 72-91 (376)
252 2c9o_A RUVB-like 1; hexameric 80.2 1.1 3.6E-05 42.1 3.4 21 56-76 63-83 (456)
253 3crm_A TRNA delta(2)-isopenten 80.2 1.1 3.8E-05 39.5 3.3 20 58-77 7-26 (323)
254 1vma_A Cell division protein F 79.9 1.9 6.5E-05 37.8 4.7 22 58-79 106-127 (306)
255 2r2a_A Uncharacterized protein 79.9 1.2 4.3E-05 36.2 3.3 22 58-79 7-28 (199)
256 1kag_A SKI, shikimate kinase I 79.7 1.3 4.6E-05 34.8 3.4 19 56-74 4-22 (173)
257 1bg2_A Kinesin; motor protein, 79.7 1.4 4.9E-05 38.9 3.8 24 50-73 70-95 (325)
258 3ney_A 55 kDa erythrocyte memb 79.5 1.3 4.3E-05 36.0 3.2 19 55-73 18-36 (197)
259 2gza_A Type IV secretion syste 79.2 1.3 4.3E-05 40.1 3.4 18 54-71 173-190 (361)
260 1qde_A EIF4A, translation init 79.1 7.2 0.00024 32.0 7.9 94 299-410 61-161 (224)
261 3d3q_A TRNA delta(2)-isopenten 79.0 1.3 4.4E-05 39.4 3.3 21 58-78 9-29 (340)
262 1zu4_A FTSY; GTPase, signal re 78.9 2.1 7.3E-05 37.8 4.7 22 58-79 107-128 (320)
263 1kht_A Adenylate kinase; phosp 78.9 1.5 5.3E-05 35.1 3.6 20 56-75 3-22 (192)
264 2v1x_A ATP-dependent DNA helic 78.9 3.2 0.00011 40.3 6.3 59 319-394 84-144 (591)
265 1ex7_A Guanylate kinase; subst 78.8 1.6 5.6E-05 35.0 3.6 16 57-72 2-17 (186)
266 3t0q_A AGR253WP; kinesin, alph 78.7 1.5 5.3E-05 39.2 3.7 26 49-74 77-104 (349)
267 2j41_A Guanylate kinase; GMP, 78.7 1.3 4.5E-05 36.1 3.1 20 55-74 5-24 (207)
268 3kb2_A SPBC2 prophage-derived 78.7 1.5 5.1E-05 34.4 3.4 18 58-75 3-20 (173)
269 3iuy_A Probable ATP-dependent 78.7 4 0.00014 33.8 6.2 76 318-411 93-174 (228)
270 1f9v_A Kinesin-like protein KA 78.5 1.6 5.4E-05 39.1 3.7 26 49-74 76-103 (347)
271 1goj_A Kinesin, kinesin heavy 78.5 1.6 5.5E-05 39.1 3.8 23 51-73 74-98 (355)
272 4etp_A Kinesin-like protein KA 78.4 1.7 5.8E-05 39.8 4.0 26 49-74 132-159 (403)
273 1v8k_A Kinesin-like protein KI 78.3 1.5 5E-05 40.1 3.5 26 49-74 146-173 (410)
274 3dc4_A Kinesin-like protein NO 78.3 1.5 5E-05 39.2 3.4 23 51-73 88-112 (344)
275 1c9k_A COBU, adenosylcobinamid 78.2 0.96 3.3E-05 36.1 2.0 45 59-116 2-46 (180)
276 2h58_A Kinesin-like protein KI 78.2 1.7 5.7E-05 38.6 3.8 26 48-73 71-98 (330)
277 3lre_A Kinesin-like protein KI 78.1 1.7 5.7E-05 39.1 3.8 32 42-73 82-123 (355)
278 2vvg_A Kinesin-2; motor protei 78.1 1.7 5.8E-05 38.9 3.8 32 42-73 66-107 (350)
279 2y65_A Kinesin, kinesin heavy 78.1 1.7 5.7E-05 39.2 3.8 32 42-73 61-102 (365)
280 1sxj_A Activator 1 95 kDa subu 78.1 2.2 7.4E-05 40.8 4.8 61 14-76 32-97 (516)
281 3fe2_A Probable ATP-dependent 78.0 5.8 0.0002 33.2 7.1 77 318-411 101-183 (242)
282 1zp6_A Hypothetical protein AT 78.0 1.1 3.9E-05 35.9 2.5 20 54-73 7-26 (191)
283 1nlf_A Regulatory protein REPA 78.0 4 0.00014 35.2 6.1 27 52-78 26-52 (279)
284 1cr0_A DNA primase/helicase; R 77.9 2.2 7.7E-05 37.1 4.6 25 55-79 34-58 (296)
285 1t5c_A CENP-E protein, centrom 77.9 1.6 5.4E-05 39.1 3.6 24 50-73 70-95 (349)
286 1sky_E F1-ATPase, F1-ATP synth 77.9 8.4 0.00029 35.9 8.5 32 48-79 140-174 (473)
287 3tr0_A Guanylate kinase, GMP k 77.8 1.4 4.9E-05 35.8 3.1 20 55-74 6-25 (205)
288 4a14_A Kinesin, kinesin-like p 77.7 1.7 6E-05 38.8 3.8 23 51-73 77-101 (344)
289 3b6u_A Kinesin-like protein KI 77.7 1.6 5.5E-05 39.3 3.6 24 50-73 94-119 (372)
290 1ly1_A Polynucleotide kinase; 77.7 1.4 4.7E-05 35.0 2.9 18 58-75 4-21 (181)
291 3cm0_A Adenylate kinase; ATP-b 77.7 1.3 4.5E-05 35.4 2.8 21 55-75 3-23 (186)
292 2zfi_A Kinesin-like protein KI 77.6 1.8 6E-05 39.1 3.8 24 50-73 82-107 (366)
293 3u4q_B ATP-dependent helicase/ 77.2 2 6.7E-05 45.7 4.6 49 60-115 5-53 (1166)
294 3eph_A TRNA isopentenyltransfe 77.2 1.5 5E-05 40.0 3.2 20 58-77 4-23 (409)
295 3fmo_B ATP-dependent RNA helic 77.1 3.3 0.00011 36.2 5.4 93 300-411 142-242 (300)
296 3gbj_A KIF13B protein; kinesin 77.0 1.7 5.9E-05 38.9 3.5 25 49-73 84-110 (354)
297 2nr8_A Kinesin-like protein KI 77.0 1.7 6E-05 38.9 3.6 25 49-73 95-121 (358)
298 1xti_A Probable ATP-dependent 76.8 16 0.00053 32.9 10.2 96 300-410 56-158 (391)
299 1x88_A Kinesin-like protein KI 76.7 1.6 5.6E-05 39.2 3.3 25 50-74 81-107 (359)
300 4fcw_A Chaperone protein CLPB; 76.4 1.6 5.6E-05 38.3 3.3 20 57-76 48-67 (311)
301 2heh_A KIF2C protein; kinesin, 76.3 1.9 6.3E-05 39.1 3.6 26 49-74 126-153 (387)
302 2wbe_C Bipolar kinesin KRP-130 76.1 1.8 6.1E-05 39.1 3.4 22 52-73 95-118 (373)
303 1ixz_A ATP-dependent metallopr 76.1 1.5 5.3E-05 37.1 2.9 56 15-74 10-67 (254)
304 2c95_A Adenylate kinase 1; tra 75.9 2.1 7.1E-05 34.5 3.6 22 55-76 8-29 (196)
305 3a00_A Guanylate kinase, GMP k 75.8 1.9 6.5E-05 34.5 3.3 17 57-73 2-18 (186)
306 2pl3_A Probable ATP-dependent 75.8 13 0.00044 30.8 8.6 77 317-411 95-178 (236)
307 2yvu_A Probable adenylyl-sulfa 75.8 3.2 0.00011 33.1 4.7 21 55-75 12-32 (186)
308 1hqc_A RUVB; extended AAA-ATPa 75.6 1.6 5.5E-05 38.6 3.0 20 56-75 38-57 (324)
309 1zuh_A Shikimate kinase; alpha 75.5 2.1 7.3E-05 33.5 3.4 20 57-76 8-27 (168)
310 1via_A Shikimate kinase; struc 75.4 2.3 8E-05 33.5 3.7 19 58-76 6-24 (175)
311 2owm_A Nckin3-434, related to 75.4 2.2 7.4E-05 39.6 3.8 22 52-73 131-154 (443)
312 3u06_A Protein claret segregat 75.2 2.2 7.5E-05 39.1 3.8 26 48-73 129-156 (412)
313 2gxq_A Heat resistant RNA depe 75.2 9.3 0.00032 30.8 7.5 74 318-410 71-150 (207)
314 2pt7_A CAG-ALFA; ATPase, prote 75.2 1.4 4.7E-05 39.3 2.4 17 55-71 170-186 (330)
315 1z6g_A Guanylate kinase; struc 75.0 2.1 7.3E-05 35.4 3.4 18 55-72 22-39 (218)
316 2v54_A DTMP kinase, thymidylat 74.9 1.7 5.9E-05 35.2 2.8 21 55-75 3-23 (204)
317 4eun_A Thermoresistant glucoki 74.8 2 6.8E-05 34.9 3.2 21 55-75 28-48 (200)
318 1rj9_A FTSY, signal recognitio 74.8 3.5 0.00012 36.1 4.9 20 56-75 102-121 (304)
319 2rep_A Kinesin-like protein KI 74.7 2.3 7.9E-05 38.4 3.7 33 42-74 93-134 (376)
320 3sr0_A Adenylate kinase; phosp 74.6 2.3 7.9E-05 34.8 3.5 20 58-77 2-21 (206)
321 2hjv_A ATP-dependent RNA helic 74.5 21 0.00072 27.4 9.1 74 93-178 35-112 (163)
322 3bfn_A Kinesin-like protein KI 74.5 1.8 6E-05 39.3 2.9 32 42-73 75-116 (388)
323 1knq_A Gluconate kinase; ALFA/ 74.5 1.8 6.1E-05 34.2 2.8 20 56-75 8-27 (175)
324 3cob_A Kinesin heavy chain-lik 74.2 1.9 6.4E-05 38.9 3.0 25 49-73 71-97 (369)
325 4gp7_A Metallophosphoesterase; 74.1 1.4 4.9E-05 34.7 2.1 19 55-73 8-26 (171)
326 2rhm_A Putative kinase; P-loop 74.0 2.1 7.2E-05 34.3 3.1 20 56-75 5-24 (193)
327 1g8p_A Magnesium-chelatase 38 73.9 1.4 4.9E-05 39.4 2.2 20 56-75 45-64 (350)
328 2v3c_C SRP54, signal recogniti 73.8 2.5 8.4E-05 39.2 3.8 24 58-81 101-124 (432)
329 3fb4_A Adenylate kinase; psych 73.7 2.4 8.2E-05 34.8 3.5 18 58-75 2-19 (216)
330 1aky_A Adenylate kinase; ATP:A 73.7 2.6 8.9E-05 34.8 3.7 21 56-76 4-24 (220)
331 2plr_A DTMP kinase, probable t 73.6 2.2 7.7E-05 34.8 3.2 22 55-76 3-24 (213)
332 3nwj_A ATSK2; P loop, shikimat 73.6 2.5 8.7E-05 35.8 3.6 21 55-75 47-67 (250)
333 3umf_A Adenylate kinase; rossm 73.5 2.5 8.5E-05 34.9 3.4 23 55-77 28-50 (217)
334 1tev_A UMP-CMP kinase; ploop, 73.5 2.3 7.8E-05 34.1 3.2 19 57-75 4-22 (196)
335 3t61_A Gluconokinase; PSI-biol 73.4 2.5 8.6E-05 34.3 3.5 19 57-75 19-37 (202)
336 2bwj_A Adenylate kinase 5; pho 73.3 2.9 0.0001 33.6 3.8 21 55-75 11-31 (199)
337 3bs4_A Uncharacterized protein 73.0 7.3 0.00025 33.1 6.3 59 49-117 9-72 (260)
338 3uie_A Adenylyl-sulfate kinase 73.0 2 7E-05 34.8 2.8 21 55-75 24-44 (200)
339 2iyv_A Shikimate kinase, SK; t 73.0 3.1 0.0001 33.1 3.8 19 57-75 3-21 (184)
340 3pxg_A Negative regulator of g 73.0 3.1 0.00011 39.1 4.4 22 55-76 200-221 (468)
341 1nks_A Adenylate kinase; therm 72.7 2.4 8.4E-05 33.9 3.2 18 58-75 3-20 (194)
342 1zd8_A GTP:AMP phosphotransfer 72.4 2.1 7.3E-05 35.5 2.8 20 56-75 7-26 (227)
343 1in4_A RUVB, holliday junction 72.4 2.3 7.7E-05 37.9 3.2 19 57-75 52-70 (334)
344 2ius_A DNA translocase FTSK; n 72.4 5 0.00017 37.9 5.6 27 55-81 166-192 (512)
345 1zak_A Adenylate kinase; ATP:A 72.3 2.9 0.0001 34.5 3.6 20 56-75 5-24 (222)
346 2i1q_A DNA repair and recombin 72.3 4.1 0.00014 36.0 4.8 23 57-79 99-121 (322)
347 2p6n_A ATP-dependent RNA helic 72.2 35 0.0012 27.1 11.3 73 93-177 54-130 (191)
348 1iy2_A ATP-dependent metallopr 72.1 2.2 7.4E-05 36.8 2.9 55 16-74 35-91 (278)
349 1e6c_A Shikimate kinase; phosp 72.0 3.2 0.00011 32.5 3.7 19 57-75 3-21 (173)
350 2cdn_A Adenylate kinase; phosp 72.0 3.1 0.00011 33.7 3.7 20 57-76 21-40 (201)
351 1ak2_A Adenylate kinase isoenz 72.0 3 0.0001 34.8 3.7 21 56-76 16-36 (233)
352 3k1j_A LON protease, ATP-depen 71.8 2.8 9.5E-05 40.9 3.9 23 53-75 57-79 (604)
353 2xxa_A Signal recognition part 71.7 4.4 0.00015 37.5 4.9 35 58-100 102-136 (433)
354 3b9q_A Chloroplast SRP recepto 71.5 4.3 0.00015 35.5 4.7 19 57-75 101-119 (302)
355 3tlx_A Adenylate kinase 2; str 71.4 3.1 0.00011 35.1 3.6 21 56-76 29-49 (243)
356 1j8m_F SRP54, signal recogniti 71.4 4.2 0.00014 35.5 4.5 23 58-80 100-122 (297)
357 3dl0_A Adenylate kinase; phosp 71.4 2.8 9.4E-05 34.5 3.3 18 58-75 2-19 (216)
358 1gvn_B Zeta; postsegregational 71.2 2.3 7.8E-05 37.0 2.8 19 57-75 34-52 (287)
359 1g41_A Heat shock protein HSLU 70.9 2.9 9.8E-05 38.8 3.5 20 56-75 50-69 (444)
360 1qf9_A UMP/CMP kinase, protein 70.7 2.9 9.9E-05 33.4 3.2 18 58-75 8-25 (194)
361 1ls1_A Signal recognition part 70.7 4.5 0.00016 35.2 4.6 24 56-79 98-121 (295)
362 1ry6_A Internal kinesin; kines 70.6 2.9 9.9E-05 37.5 3.4 20 55-74 82-103 (360)
363 3ice_A Transcription terminati 70.5 12 0.00041 34.0 7.2 31 45-75 160-193 (422)
364 1s96_A Guanylate kinase, GMP k 70.5 2.9 9.9E-05 34.6 3.2 20 53-72 13-32 (219)
365 3zq6_A Putative arsenical pump 70.4 4.4 0.00015 35.8 4.6 34 59-101 17-50 (324)
366 3f9v_A Minichromosome maintena 70.4 2.3 7.8E-05 41.3 2.9 16 58-73 329-344 (595)
367 2bdt_A BH3686; alpha-beta prot 70.1 2.8 9.4E-05 33.6 2.9 19 57-75 3-21 (189)
368 2woo_A ATPase GET3; tail-ancho 69.8 4.8 0.00017 35.7 4.7 34 58-100 21-54 (329)
369 1znw_A Guanylate kinase, GMP k 69.8 3.1 0.0001 34.0 3.2 21 52-72 16-36 (207)
370 2ce7_A Cell division protein F 69.8 2.5 8.7E-05 39.6 2.9 55 16-75 11-68 (476)
371 2jaq_A Deoxyguanosine kinase; 69.8 3.3 0.00011 33.4 3.4 18 58-75 2-19 (205)
372 3be4_A Adenylate kinase; malar 69.7 3.3 0.00011 34.1 3.4 20 57-76 6-25 (217)
373 2vhj_A Ntpase P4, P4; non- hyd 69.3 2.9 9.9E-05 36.8 3.0 25 55-79 122-146 (331)
374 3cmw_A Protein RECA, recombina 69.1 6.3 0.00021 43.1 6.0 40 55-103 33-72 (1706)
375 3ug7_A Arsenical pump-driving 69.0 5.2 0.00018 35.8 4.7 33 59-100 29-61 (349)
376 2wwf_A Thymidilate kinase, put 68.9 3.5 0.00012 33.6 3.4 22 55-76 9-30 (212)
377 2pt5_A Shikimate kinase, SK; a 68.8 3.8 0.00013 31.9 3.4 18 58-75 2-19 (168)
378 1e4v_A Adenylate kinase; trans 68.5 3.4 0.00012 33.9 3.2 19 58-76 2-20 (214)
379 1ukz_A Uridylate kinase; trans 68.3 3.1 0.00011 33.7 2.9 18 58-75 17-34 (203)
380 1ihu_A Arsenical pump-driving 68.3 5.5 0.00019 38.7 5.1 27 57-83 9-35 (589)
381 3tqf_A HPR(Ser) kinase; transf 67.9 3 0.0001 32.9 2.5 22 55-76 15-36 (181)
382 1m7g_A Adenylylsulfate kinase; 67.9 5 0.00017 32.7 4.1 32 43-75 13-44 (211)
383 3lnc_A Guanylate kinase, GMP k 67.8 2.3 8E-05 35.4 2.1 19 55-73 26-44 (231)
384 2ffh_A Protein (FFH); SRP54, s 67.8 5.3 0.00018 36.8 4.6 23 58-80 100-122 (425)
385 2pez_A Bifunctional 3'-phospho 67.7 3.2 0.00011 32.9 2.8 21 55-75 4-24 (179)
386 1xjc_A MOBB protein homolog; s 67.7 7.3 0.00025 30.6 4.8 18 58-75 6-23 (169)
387 3c8u_A Fructokinase; YP_612366 67.6 3 0.0001 34.0 2.7 19 55-73 21-39 (208)
388 1nn5_A Similar to deoxythymidy 67.5 4 0.00014 33.3 3.5 22 55-76 8-29 (215)
389 2vli_A Antibiotic resistance p 67.4 3.1 0.00011 32.9 2.7 20 56-75 5-24 (183)
390 1fuu_A Yeast initiation factor 67.4 27 0.00093 31.3 9.4 92 301-410 70-168 (394)
391 2pbr_A DTMP kinase, thymidylat 67.3 4.1 0.00014 32.5 3.5 18 59-76 3-20 (195)
392 3e70_C DPA, signal recognition 67.3 6.1 0.00021 35.0 4.7 20 56-75 129-148 (328)
393 2xb4_A Adenylate kinase; ATP-b 67.3 4 0.00014 33.8 3.4 19 58-76 2-20 (223)
394 2og2_A Putative signal recogni 67.1 5.9 0.0002 35.6 4.6 19 57-75 158-176 (359)
395 1fuk_A Eukaryotic initiation f 67.0 41 0.0014 25.8 10.0 74 93-178 30-107 (165)
396 1cke_A CK, MSSA, protein (cyti 67.0 4.1 0.00014 33.7 3.4 19 57-75 6-24 (227)
397 3a4m_A L-seryl-tRNA(SEC) kinas 66.6 3.4 0.00012 35.2 2.9 19 57-75 5-23 (260)
398 1byi_A Dethiobiotin synthase; 66.6 7.3 0.00025 32.0 5.0 33 60-101 6-38 (224)
399 1ye8_A Protein THEP1, hypothet 66.2 3.8 0.00013 32.6 2.9 16 58-73 2-17 (178)
400 2z0h_A DTMP kinase, thymidylat 66.1 4.2 0.00014 32.6 3.3 17 59-75 3-19 (197)
401 4a74_A DNA repair and recombin 66.0 3.1 0.00011 34.4 2.5 21 55-75 24-44 (231)
402 1jjv_A Dephospho-COA kinase; P 65.7 3.8 0.00013 33.3 2.9 18 58-75 4-21 (206)
403 1f2t_A RAD50 ABC-ATPase; DNA d 65.6 5 0.00017 30.7 3.4 15 58-72 25-39 (149)
404 3pxi_A Negative regulator of g 65.3 5.2 0.00018 40.2 4.4 22 56-77 201-222 (758)
405 2v9p_A Replication protein E1; 65.2 4.1 0.00014 35.6 3.1 18 55-72 125-142 (305)
406 1s2m_A Putative ATP-dependent 65.1 33 0.0011 30.9 9.6 95 300-411 69-170 (400)
407 2i3b_A HCR-ntpase, human cance 65.1 4.7 0.00016 32.4 3.3 19 56-74 1-19 (189)
408 3iqw_A Tail-anchored protein t 64.9 6.7 0.00023 34.8 4.5 35 57-100 17-51 (334)
409 2qt1_A Nicotinamide riboside k 64.9 3.5 0.00012 33.5 2.6 20 55-74 20-39 (207)
410 1ypw_A Transitional endoplasmi 64.6 1.6 5.5E-05 44.2 0.5 57 16-75 472-530 (806)
411 3m6a_A ATP-dependent protease 64.4 4.6 0.00016 38.8 3.6 21 55-75 107-127 (543)
412 2j37_W Signal recognition part 64.2 7.3 0.00025 36.8 4.9 35 58-101 103-137 (504)
413 2iut_A DNA translocase FTSK; n 64.1 9.4 0.00032 36.6 5.5 28 56-83 214-241 (574)
414 3cmu_A Protein RECA, recombina 64.0 6.6 0.00023 43.7 5.0 46 55-110 1080-1125(2050)
415 2ph1_A Nucleotide-binding prot 64.0 6.9 0.00024 33.2 4.4 23 60-82 23-45 (262)
416 2l82_A Designed protein OR32; 63.9 22 0.00076 24.8 5.9 47 322-385 5-51 (162)
417 2jgn_A DBX, DDX3, ATP-dependen 63.6 22 0.00074 28.2 7.0 74 92-177 45-122 (185)
418 1hyq_A MIND, cell division inh 63.6 8.3 0.00028 32.7 4.8 32 60-100 7-38 (263)
419 1g3q_A MIND ATPase, cell divis 63.5 7.3 0.00025 32.3 4.4 32 60-100 7-38 (237)
420 2if2_A Dephospho-COA kinase; a 63.4 4 0.00014 33.0 2.7 17 58-74 3-19 (204)
421 3asz_A Uridine kinase; cytidin 63.4 3.9 0.00013 33.4 2.6 18 56-73 6-23 (211)
422 4akg_A Glutathione S-transfera 63.3 3.7 0.00013 47.1 3.1 19 55-73 1266-1284(2695)
423 2p5t_B PEZT; postsegregational 63.3 3 0.0001 35.4 1.9 19 57-75 33-51 (253)
424 2rb4_A ATP-dependent RNA helic 63.2 42 0.0014 26.0 8.7 73 92-176 33-109 (175)
425 1uf9_A TT1252 protein; P-loop, 63.1 4.1 0.00014 32.8 2.7 18 58-75 10-27 (203)
426 4e22_A Cytidylate kinase; P-lo 63.0 4.7 0.00016 34.1 3.1 21 55-75 26-46 (252)
427 2woj_A ATPase GET3; tail-ancho 62.7 7.3 0.00025 34.9 4.4 36 58-101 20-56 (354)
428 2j0s_A ATP-dependent RNA helic 62.5 43 0.0015 30.3 9.9 94 300-410 85-185 (410)
429 1gku_B Reverse gyrase, TOP-RG; 62.5 16 0.00054 38.3 7.4 96 299-411 81-182 (1054)
430 3kta_A Chromosome segregation 62.4 4.7 0.00016 31.9 2.9 15 58-72 28-42 (182)
431 2dhr_A FTSH; AAA+ protein, hex 62.2 4.3 0.00015 38.3 2.9 55 16-74 26-82 (499)
432 2grj_A Dephospho-COA kinase; T 61.8 5.8 0.0002 31.9 3.3 18 58-75 14-31 (192)
433 2bbw_A Adenylate kinase 4, AK4 61.7 4.8 0.00016 33.8 2.9 20 56-75 27-46 (246)
434 1vt4_I APAF-1 related killer D 61.4 29 0.00098 36.3 8.7 33 124-156 245-277 (1221)
435 3q9l_A Septum site-determining 61.1 8.3 0.00029 32.5 4.4 23 60-82 7-29 (260)
436 3bfv_A CAPA1, CAPB2, membrane 61.0 8.5 0.00029 33.0 4.4 32 59-99 85-117 (271)
437 3cio_A ETK, tyrosine-protein k 60.9 9.6 0.00033 33.2 4.8 34 58-100 106-140 (299)
438 3kjh_A CO dehydrogenase/acetyl 60.8 7 0.00024 32.7 3.8 23 59-81 3-25 (254)
439 3pxi_A Negative regulator of g 60.6 8.6 0.0003 38.6 5.0 20 58-77 523-542 (758)
440 2yhs_A FTSY, cell division pro 60.5 8.9 0.0003 36.0 4.6 18 58-75 295-312 (503)
441 3la6_A Tyrosine-protein kinase 60.3 10 0.00034 32.8 4.7 49 42-99 68-127 (286)
442 2f1r_A Molybdopterin-guanine d 60.2 3.1 0.00011 32.8 1.3 17 58-74 4-20 (171)
443 1yrb_A ATP(GTP)binding protein 60.2 9.2 0.00032 32.3 4.5 22 58-79 16-37 (262)
444 1t5i_A C_terminal domain of A 60.2 56 0.0019 25.3 8.9 74 93-178 31-108 (172)
445 3qf7_A RAD50; ABC-ATPase, ATPa 59.8 6.5 0.00022 35.4 3.6 16 58-73 25-40 (365)
446 1wp9_A ATP-dependent RNA helic 59.8 28 0.00095 32.2 8.2 93 299-410 33-131 (494)
447 3cwq_A Para family chromosome 59.6 11 0.00038 30.6 4.7 22 60-81 5-26 (209)
448 3tqc_A Pantothenate kinase; bi 59.3 18 0.00061 31.9 6.2 15 59-73 95-109 (321)
449 2db3_A ATP-dependent RNA helic 59.0 19 0.00066 33.2 6.8 75 319-410 129-209 (434)
450 3l0o_A Transcription terminati 58.9 19 0.00064 32.7 6.2 32 42-73 158-192 (427)
451 3io3_A DEHA2D07832P; chaperone 58.9 10 0.00035 33.9 4.6 37 57-101 19-56 (348)
452 4anj_A Unconventional myosin-V 58.9 13 0.00044 38.6 5.9 62 15-77 95-165 (1052)
453 1vht_A Dephospho-COA kinase; s 58.8 5.9 0.0002 32.5 2.9 19 57-75 5-23 (218)
454 3tif_A Uncharacterized ABC tra 58.7 5 0.00017 33.6 2.5 17 55-71 30-46 (235)
455 3of5_A Dethiobiotin synthetase 58.7 10 0.00034 31.5 4.3 23 58-80 6-29 (228)
456 1r6b_X CLPA protein; AAA+, N-t 58.5 8.6 0.00029 38.6 4.6 22 56-77 207-228 (758)
457 4eaq_A DTMP kinase, thymidylat 58.1 7.1 0.00024 32.4 3.3 21 55-75 25-45 (229)
458 1ypw_A Transitional endoplasmi 58.0 5 0.00017 40.6 2.7 58 14-75 197-257 (806)
459 1odf_A YGR205W, hypothetical 3 57.7 7.4 0.00025 33.8 3.4 17 58-74 33-49 (290)
460 1uj2_A Uridine-cytidine kinase 57.6 6.2 0.00021 33.3 2.9 18 58-75 24-41 (252)
461 3auy_A DNA double-strand break 57.4 6.9 0.00024 35.4 3.3 15 58-72 27-41 (371)
462 3p32_A Probable GTPase RV1496/ 57.2 12 0.00039 33.6 4.8 21 58-78 81-101 (355)
463 4h1g_A Maltose binding protein 57.2 7.5 0.00026 38.8 3.8 50 15-73 429-480 (715)
464 1ltq_A Polynucleotide kinase; 57.1 6.2 0.00021 34.3 2.9 18 58-75 4-21 (301)
465 3r20_A Cytidylate kinase; stru 57.0 8.1 0.00028 32.2 3.4 19 57-75 10-28 (233)
466 3vkg_A Dynein heavy chain, cyt 56.9 5.2 0.00018 46.6 2.8 25 49-73 1296-1321(3245)
467 1rz3_A Hypothetical protein rb 56.8 6.2 0.00021 31.9 2.7 18 57-74 23-40 (201)
468 1r6b_X CLPA protein; AAA+, N-t 56.8 6.5 0.00022 39.5 3.3 19 58-76 490-508 (758)
469 1gtv_A TMK, thymidylate kinase 56.7 4 0.00014 33.3 1.5 17 59-75 3-19 (214)
470 1wrb_A DJVLGB; RNA helicase, D 56.7 18 0.00061 30.3 5.7 75 319-410 100-180 (253)
471 3eiq_A Eukaryotic initiation f 56.4 19 0.00063 32.7 6.2 95 300-410 88-189 (414)
472 2qen_A Walker-type ATPase; unk 56.1 12 0.00042 33.0 4.8 33 42-74 16-49 (350)
473 3qks_A DNA double-strand break 56.1 9.1 0.00031 31.1 3.6 16 58-73 25-40 (203)
474 1svm_A Large T antigen; AAA+ f 56.0 7.2 0.00025 35.3 3.2 20 55-74 168-187 (377)
475 1tf7_A KAIC; homohexamer, hexa 56.0 11 0.00036 36.0 4.5 39 55-102 280-318 (525)
476 2cbz_A Multidrug resistance-as 55.9 5.9 0.0002 33.2 2.5 17 55-71 30-46 (237)
477 3end_A Light-independent proto 55.7 13 0.00043 32.5 4.7 27 57-83 42-68 (307)
478 2afh_E Nitrogenase iron protei 55.7 12 0.00042 32.2 4.6 25 59-83 5-29 (289)
479 3eaq_A Heat resistant RNA depe 55.7 58 0.002 26.3 8.5 71 93-175 31-105 (212)
480 1qvr_A CLPB protein; coiled co 55.4 7.9 0.00027 39.5 3.7 19 58-76 590-608 (854)
481 1cp2_A CP2, nitrogenase iron p 55.4 12 0.00043 31.6 4.5 22 60-81 5-26 (269)
482 1nij_A Hypothetical protein YJ 55.2 9.2 0.00031 33.7 3.7 13 59-71 7-19 (318)
483 1sgw_A Putative ABC transporte 55.2 6.8 0.00023 32.2 2.7 17 55-71 34-50 (214)
484 1htw_A HI0065; nucleotide-bind 54.8 7.8 0.00027 30.0 2.8 17 55-71 32-48 (158)
485 3ake_A Cytidylate kinase; CMP 54.3 9.5 0.00032 30.8 3.5 18 58-75 4-21 (208)
486 2f6r_A COA synthase, bifunctio 54.2 7 0.00024 33.7 2.7 20 58-77 77-96 (281)
487 3dkp_A Probable ATP-dependent 54.1 23 0.00078 29.4 5.9 96 300-411 77-182 (245)
488 1q3t_A Cytidylate kinase; nucl 53.9 8.6 0.0003 32.0 3.2 21 55-75 15-35 (236)
489 1hv8_A Putative ATP-dependent 53.7 53 0.0018 28.9 8.7 94 299-410 54-153 (367)
490 3gfo_A Cobalt import ATP-bindi 53.7 6.7 0.00023 33.7 2.5 17 55-71 33-49 (275)
491 1np6_A Molybdopterin-guanine d 53.4 8.8 0.0003 30.3 2.9 15 58-72 8-22 (174)
492 3igf_A ALL4481 protein; two-do 53.3 8.6 0.00029 34.7 3.2 25 59-83 5-29 (374)
493 3nh6_A ATP-binding cassette SU 53.2 5.7 0.00019 34.8 1.9 17 55-71 79-95 (306)
494 2pze_A Cystic fibrosis transme 52.7 7.2 0.00024 32.4 2.4 17 55-71 33-49 (229)
495 2oze_A ORF delta'; para, walke 52.7 16 0.00056 31.5 4.9 26 56-81 34-62 (298)
496 2v6i_A RNA helicase; membrane, 52.6 21 0.00073 32.9 5.9 54 93-151 171-224 (431)
497 1wcv_1 SOJ, segregation protei 52.2 9.4 0.00032 32.3 3.2 29 62-99 13-41 (257)
498 4db1_A Myosin-7; S1DC, cardiac 52.2 19 0.00067 35.9 5.7 62 16-77 124-192 (783)
499 2jeo_A Uridine-cytidine kinase 52.1 8 0.00027 32.4 2.7 20 55-74 24-43 (245)
500 2xj4_A MIPZ; replication, cell 52.0 12 0.0004 32.3 3.8 22 61-82 10-31 (286)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-56 Score=425.88 Aligned_cols=350 Identities=30% Similarity=0.489 Sum_probs=302.0
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEE
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vl 97 (444)
.+|+++++++.+.+.| ..+||..|+++|.++++.+++++++++++|||+|||++++++++..+...... ....++++|
T Consensus 56 ~~f~~~~l~~~l~~~l-~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~~~l 133 (434)
T 2db3_A 56 QHFTSADLRDIIIDNV-NKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRPQVV 133 (434)
T ss_dssp CCGGGSCCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCCSEE
T ss_pred CChhhcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCccEE
Confidence 5799999999999999 66799999999999999999999999999999999999999999988764321 123467899
Q ss_pred EEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEec
Q 013392 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (444)
Q Consensus 98 il~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE 177 (444)
|++|+++|+.|+.++++++....+ .....++++.........+..+++|+|+||++|.+.+.+ ....+.++++||+||
T Consensus 134 il~PtreLa~Q~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 134 IVSPTRELAIQIFNEARKFAFESY-LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR-TFITFEDTRFVVLDE 211 (434)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSS-CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEET
T ss_pred EEecCHHHHHHHHHHHHHHhccCC-cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh-CCcccccCCeEEEcc
Confidence 999999999999999999876544 455677788888777777888899999999999998886 455678999999999
Q ss_pred hhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccc
Q 013392 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (444)
Q Consensus 178 ~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (444)
+|++.+.++...+..++..+.... .+|++++|||++.....+...++.++..+......
T Consensus 212 ah~~~~~gf~~~~~~i~~~~~~~~-------------~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-------- 270 (434)
T 2db3_A 212 ADRMLDMGFSEDMRRIMTHVTMRP-------------EHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-------- 270 (434)
T ss_dssp HHHHTSTTTHHHHHHHHHCTTSCS-------------SCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT--------
T ss_pred HhhhhccCcHHHHHHHHHhcCCCC-------------CceEEEEeccCCHHHHHHHHHhccCCEEEEecccc--------
Confidence 999999999999999888764221 78999999999999888888888777766543321
Q ss_pred cccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhh
Q 013392 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (444)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~ 337 (444)
.....+.+.+..+....|...+.+++... ..++||||++++.++.+++
T Consensus 271 ---------------------------~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-----~~~~lVF~~t~~~a~~l~~ 318 (434)
T 2db3_A 271 ---------------------------GACSDVKQTIYEVNKYAKRSKLIEILSEQ-----ADGTIVFVETKRGADFLAS 318 (434)
T ss_dssp ---------------------------CCCTTEEEEEEECCGGGHHHHHHHHHHHC-----CTTEEEECSSHHHHHHHHH
T ss_pred ---------------------------ccccccceEEEEeCcHHHHHHHHHHHHhC-----CCCEEEEEeCcHHHHHHHH
Confidence 11234556666777778888888888764 2349999999999999999
Q ss_pred hhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCc
Q 013392 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417 (444)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~ 417 (444)
.|.+. ++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+|+.|.+.
T Consensus 319 ~L~~~-----------------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~ 381 (434)
T 2db3_A 319 FLSEK-----------------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKI 381 (434)
T ss_dssp HHHHT-----------------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSH
T ss_pred HHHhC-----------------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCH
Confidence 99886 8899999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccccccCCCcccccceEE
Q 013392 418 TEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 418 ~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
.+|+||+||+||.|+.|.+++|+.
T Consensus 382 ~~y~qriGR~gR~g~~G~a~~~~~ 405 (434)
T 2db3_A 382 DDYVHRIGRTGRVGNNGRATSFFD 405 (434)
T ss_dssp HHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred HHHHHHhcccccCCCCCEEEEEEe
Confidence 999999999999999999998864
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.6e-54 Score=408.87 Aligned_cols=357 Identities=31% Similarity=0.479 Sum_probs=295.8
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCC--------
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPR-------- 87 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~-------- 87 (444)
...+|+++++++.+.+.| ..+||..|+++|.++++.++.++++++.+|||+|||+++++++++.+......
T Consensus 13 ~~~~f~~~~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNI-ELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCSSGGGSCCCHHHHHHH-HHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred ccCCHhhCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 345799999999999999 56699999999999999999999999999999999999999999887653211
Q ss_pred ----CCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccC
Q 013392 88 ----IDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS 163 (444)
Q Consensus 88 ----~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~ 163 (444)
.....++++||++|+++|+.|+.++++++....+ .....+.++.........+..+++|+|+||++|.+.+.. .
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~ 169 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR-VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-G 169 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSS-CCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-T
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCC-ceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc-C
Confidence 0112346799999999999999999999876544 455667777777777777788899999999999998876 4
Q ss_pred ccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEE
Q 013392 164 SFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243 (444)
Q Consensus 164 ~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~ 243 (444)
.+.+..+++||+||+|++.+.++...+..++...... .....|++++|||++.....+...++..+..+
T Consensus 170 ~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 238 (417)
T 2i4i_A 170 KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP-----------PKGVRHTMMFSATFPKEIQMLARDFLDEYIFL 238 (417)
T ss_dssp SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCC-----------CBTTBEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCC-----------CcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEE
Confidence 5667889999999999999988888888777643221 01157899999999998888888777777665
Q ss_pred cccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEE
Q 013392 244 GLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLV 323 (444)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~i 323 (444)
...... .....+.+.+..++...+...+.++++.. ..+.++|
T Consensus 239 ~~~~~~-----------------------------------~~~~~i~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~l 280 (417)
T 2i4i_A 239 AVGRVG-----------------------------------STSENITQKVVWVEESDKRSFLLDLLNAT---GKDSLTL 280 (417)
T ss_dssp EEC---------------------------------------CCSSEEEEEEECCGGGHHHHHHHHHHTC---CTTCEEE
T ss_pred EeCCCC-----------------------------------CCccCceEEEEEeccHhHHHHHHHHHHhc---CCCCeEE
Confidence 443221 11234556666777778888888888764 4578999
Q ss_pred EEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCC
Q 013392 324 VFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP 403 (444)
Q Consensus 324 vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~ 403 (444)
|||++++.++.+++.|.+. ++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|
T Consensus 281 Vf~~~~~~~~~l~~~L~~~-----------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip 343 (417)
T 2i4i_A 281 VFVETKKGADSLEDFLYHE-----------------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDIS 343 (417)
T ss_dssp EECSSHHHHHHHHHHHHHT-----------------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCC
T ss_pred EEECCHHHHHHHHHHHHHC-----------------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcc
Confidence 9999999999999999886 88999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 404 KVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 404 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
++++||++++|.+...|+||+||+||.|+.|.++.++.
T Consensus 344 ~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (417)
T 2i4i_A 344 NVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 381 (417)
T ss_dssp CEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEEC
T ss_pred cCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEc
Confidence 99999999999999999999999999999999988763
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=8.1e-54 Score=406.06 Aligned_cols=347 Identities=29% Similarity=0.460 Sum_probs=292.4
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCc
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (444)
....+|+++++++++.+.| ..+||..|+++|.++++.+++++++++.+|||+|||+++++++++.+... ..+.
T Consensus 34 ~~~~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------~~~~ 106 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGI-YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRET 106 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHH-HHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT------SCSC
T ss_pred cCCCCHhhcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc------cCCc
Confidence 3456899999999999999 66799999999999999999999999999999999999999998876431 2456
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEE
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV 174 (444)
++||++|+++|+.|+.+++.++....+ .......++.........+..+++|+|+||+.+.+.+.. ....+..+++||
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~vV 184 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMN-VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLV 184 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCC-eEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh-CCccHhheeEEE
Confidence 799999999999999999999876554 445666777777777777777889999999999998886 455667899999
Q ss_pred EechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCc
Q 013392 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (444)
Q Consensus 175 ~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (444)
+||+|++.+.++...+..++..++. ..|++++|||++.....+...++.+|..+......
T Consensus 185 iDEah~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----- 244 (410)
T 2j0s_A 185 LDEADEMLNKGFKEQIYDVYRYLPP---------------ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE----- 244 (410)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCT---------------TCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG-----
T ss_pred EccHHHHHhhhhHHHHHHHHHhCcc---------------CceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc-----
Confidence 9999999988888888888776655 78999999999987777666666666655332221
Q ss_pred ccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCC-cHHHHHHHHHhhcccccCceEEEEecccchhh
Q 013392 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (444)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~ 333 (444)
.....+.+.+..+.... +...+..++... ...++||||++++.++
T Consensus 245 ------------------------------~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~----~~~~~lVf~~~~~~~~ 290 (410)
T 2j0s_A 245 ------------------------------LTLEGIKQFFVAVEREEWKFDTLCDLYDTL----TITQAVIFCNTKRKVD 290 (410)
T ss_dssp ------------------------------CSCTTEEEEEEEESSTTHHHHHHHHHHHHH----TSSEEEEECSSHHHHH
T ss_pred ------------------------------ccCCCceEEEEEeCcHHhHHHHHHHHHHhc----CCCcEEEEEcCHHHHH
Confidence 11233445555555444 777777777654 3569999999999999
Q ss_pred hhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC
Q 013392 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (444)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~ 413 (444)
.+++.|.+. ++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++
T Consensus 291 ~l~~~L~~~-----------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~ 353 (410)
T 2j0s_A 291 WLTEKMREA-----------------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL 353 (410)
T ss_dssp HHHHHHHHT-----------------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred HHHHHHHhC-----------------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC
Confidence 999999886 888999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhcccccccCCCcccccceEE
Q 013392 414 AGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 414 ~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
|.+...|+||+||+||.|++|.++.++.
T Consensus 354 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (410)
T 2j0s_A 354 PNNRELYIHRIGRSGRYGRKGVAINFVK 381 (410)
T ss_dssp CSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred CCCHHHHHHhcccccCCCCceEEEEEec
Confidence 9999999999999999999999998864
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=6.3e-53 Score=397.71 Aligned_cols=348 Identities=26% Similarity=0.428 Sum_probs=290.2
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCce
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (444)
.+++|+++++++.+.+.| ..+||..|+++|.++++.++.++++++.+|||+|||++++++++..+... ..+.+
T Consensus 6 ~~~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------~~~~~ 78 (391)
T 1xti_A 6 MSSGFRDFLLKPELLRAI-VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQVS 78 (391)
T ss_dssp ---CGGGGCCCHHHHHHH-HHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC------TTCCC
T ss_pred CCCChhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc------CCCee
Confidence 457899999999999999 55699999999999999999999999999999999999999998876441 23557
Q ss_pred EEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhc-CCCcEEEeCchHHHHHHhccCccccCCccEEE
Q 013392 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (444)
Q Consensus 96 vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV 174 (444)
+||++|+++|+.|+.+++.++....+......+.++.........+. ..++|+|+||+++...+.. ....+..+++||
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vV 157 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFI 157 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEE
Confidence 99999999999999999999987665566677777776665555544 4479999999999998876 455677999999
Q ss_pred EechhHhhhc-chhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCC
Q 013392 175 FDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (444)
Q Consensus 175 ~DE~h~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (444)
+||+|++.+. ++...+..++...+. ..|++++|||+++........++..+..+.......
T Consensus 158 iDEaH~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--- 219 (391)
T 1xti_A 158 LDECDKMLEQLDMRRDVQEIFRMTPH---------------EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETK--- 219 (391)
T ss_dssp ECSHHHHTSSHHHHHHHHHHHHTSCS---------------SSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCC---
T ss_pred EeCHHHHhhccchHHHHHHHHhhCCC---------------CceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccc---
Confidence 9999998774 566666667666554 789999999999988888887877776654432210
Q ss_pred cccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhh
Q 013392 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (444)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~ 333 (444)
.....+.+.+.......+...+..++... .+.++||||++++.++
T Consensus 220 -------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~lvf~~~~~~~~ 264 (391)
T 1xti_A 220 -------------------------------LTLHGLQQYYVKLKDNEKNRKLFDLLDVL----EFNQVVIFVKSVQRCI 264 (391)
T ss_dssp -------------------------------CCCTTCEEEEEECCGGGHHHHHHHHHHHS----CCSEEEEECSCHHHHH
T ss_pred -------------------------------cCcccceEEEEEcCchhHHHHHHHHHHhc----CCCcEEEEeCcHHHHH
Confidence 01123445566666777888888777763 5679999999999999
Q ss_pred hhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC
Q 013392 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (444)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~ 413 (444)
.+++.|.+. ++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 265 ~l~~~L~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 327 (391)
T 1xti_A 265 ALAQLLVEQ-----------------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM 327 (391)
T ss_dssp HHHHHHHHT-----------------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC
T ss_pred HHHHHHHhC-----------------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 999999886 788999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhcccccccCCCcccccceEE
Q 013392 414 AGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 414 ~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
|++...|+||+||+||.|++|.++.++.
T Consensus 328 p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 355 (391)
T 1xti_A 328 PEDSDTYLHRVARAGRFGTKGLAITFVS 355 (391)
T ss_dssp CSSHHHHHHHHCBCSSSCCCCEEEEEEC
T ss_pred CCCHHHHHHhcccccCCCCceEEEEEEc
Confidence 9999999999999999999999988764
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.7e-53 Score=398.15 Aligned_cols=346 Identities=30% Similarity=0.456 Sum_probs=289.4
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCc
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (444)
....+|+++++++.+.+.| ..+||..|+++|.++++.+++++++++.+|||+|||++++++++..+... ..+.
T Consensus 18 ~~~~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~------~~~~ 90 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGI-FEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK------LNKI 90 (400)
T ss_dssp ---CCGGGGCCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT------SCSC
T ss_pred cccCChhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc------cCCc
Confidence 4467899999999999999 56699999999999999999999999999999999999999998876541 2355
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEE
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV 174 (444)
++||++|+++|+.|+.+++++++...+ .......++............+++|+|+||+++.+.+.. ....+.++++||
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vI 168 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHCG-ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFI 168 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh-CCcccccCCEEE
Confidence 799999999999999999999877554 445566677766666666777899999999999998876 445567899999
Q ss_pred EechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCc
Q 013392 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (444)
Q Consensus 175 ~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (444)
+||+|++.+..+...+..+...++. ..+++++|||++..........+..+..+.....
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~~---------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~------ 227 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLPP---------------THQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE------ 227 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCS---------------SCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS------
T ss_pred EeCchHhhhhchHHHHHHHHHhCCc---------------CceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc------
Confidence 9999998887777777777766554 7799999999998887777777666655432221
Q ss_pred ccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhh
Q 013392 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (444)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~ 334 (444)
.....+.+.+..+....+...+..++.. ....++||||++++.++.
T Consensus 228 ------------------------------~~~~~~~~~~~~~~~~~k~~~l~~~~~~----~~~~~~lVf~~~~~~~~~ 273 (400)
T 1s2m_A 228 ------------------------------LTLKGITQYYAFVEERQKLHCLNTLFSK----LQINQAIIFCNSTNRVEL 273 (400)
T ss_dssp ------------------------------CBCTTEEEEEEECCGGGHHHHHHHHHHH----SCCSEEEEECSSHHHHHH
T ss_pred ------------------------------cccCCceeEEEEechhhHHHHHHHHHhh----cCCCcEEEEEecHHHHHH
Confidence 0112344555566667777777777765 345799999999999999
Q ss_pred hhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCC
Q 013392 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (444)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~ 414 (444)
+++.|.+. ++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 274 l~~~L~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p 336 (400)
T 1s2m_A 274 LAKKITDL-----------------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFP 336 (400)
T ss_dssp HHHHHHHH-----------------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCC
T ss_pred HHHHHHhc-----------------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCC
Confidence 99999887 8889999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcccccccCCCcccccceEE
Q 013392 415 GEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 415 ~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
.+...|+||+||+||.|++|.++.++.
T Consensus 337 ~s~~~~~Qr~GR~gR~g~~g~~~~l~~ 363 (400)
T 1s2m_A 337 KTAETYLHRIGRSGRFGHLGLAINLIN 363 (400)
T ss_dssp SSHHHHHHHHCBSSCTTCCEEEEEEEC
T ss_pred CCHHHHHHhcchhcCCCCCceEEEEec
Confidence 999999999999999999999988763
No 6
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.2e-52 Score=396.85 Aligned_cols=353 Identities=23% Similarity=0.392 Sum_probs=290.1
Q ss_pred hhhhhhccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcC--CcEEEEcCCCCchhHHhHHHHHHHHhccC
Q 013392 8 KETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYS 85 (444)
Q Consensus 8 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~il~~~tG~GKT~~~~~~~~~~~~~~~ 85 (444)
..+.++++...+|+++++++.+.+.| ..+||..|+++|.++++.++.+ +++++++|||+|||++++++++..+...
T Consensus 15 ~~~~~~~~~~~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~- 92 (412)
T 3fht_A 15 RDPNSPLYSVKSFEELRLKPQLLQGV-YAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA- 92 (412)
T ss_dssp TCTTSTTCCSSCTGGGTCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-
T ss_pred ccCCCCccccCCHhhCCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-
Confidence 35556778888999999999999999 5679999999999999999987 8999999999999999999999877542
Q ss_pred CCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCcc
Q 013392 86 PRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF 165 (444)
Q Consensus 86 ~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~ 165 (444)
..+.++||++|+++|+.|+.+.++++.............++...... ...+++|+|+||+++...+...+.+
T Consensus 93 -----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~ 164 (412)
T 3fht_A 93 -----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFI 164 (412)
T ss_dssp -----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSS
T ss_pred -----CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCc
Confidence 23457999999999999999999998776554555555554433221 1345789999999999998775666
Q ss_pred ccCCccEEEEechhHhhh-cchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEc
Q 013392 166 LHTNLRWIIFDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244 (444)
Q Consensus 166 ~~~~~~lvV~DE~h~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~ 244 (444)
.+.++++||+||+|++.+ ..+......+...++. ..|++++|||+++....+....+.++..+.
T Consensus 165 ~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 229 (412)
T 3fht_A 165 DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR---------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIK 229 (412)
T ss_dssp CGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCT---------------TCEEEEEESCCCHHHHHHHHHHSSSCEEEC
T ss_pred ChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCC---------------CceEEEEEeecCHHHHHHHHHhcCCCeEEe
Confidence 778999999999999887 4666777777776665 789999999999988888888888777765
Q ss_pred ccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCC-CCcHHHHHHHHHhhcccccCceEE
Q 013392 245 LDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLV 323 (444)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~i 323 (444)
..... .....+.+.+..... ..+...+..++.. ..+.++|
T Consensus 230 ~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~l 270 (412)
T 3fht_A 230 LKREE-----------------------------------ETLDTIKQYYVLCSSRDEKFQALCNLYGA----ITIAQAM 270 (412)
T ss_dssp CCGGG-----------------------------------SSCTTEEEEEEECSSHHHHHHHHHHHHHH----HSSSEEE
T ss_pred ecccc-----------------------------------ccccCceEEEEEcCChHHHHHHHHHHHhh----cCCCCEE
Confidence 44331 112233444444433 3455666666554 3467999
Q ss_pred EEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCC
Q 013392 324 VFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP 403 (444)
Q Consensus 324 vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~ 403 (444)
|||++++.++.+++.|.+. ++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|
T Consensus 271 vf~~~~~~~~~l~~~L~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 333 (412)
T 3fht_A 271 IFCHTRKTASWLAAELSKE-----------------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 333 (412)
T ss_dssp EECSSHHHHHHHHHHHHHT-----------------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCT
T ss_pred EEeCCHHHHHHHHHHHHhC-----------------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCcc
Confidence 9999999999999999887 78899999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCC------CcchhhhcccccccCCCcccccceEE
Q 013392 404 KVKCIIQYDSAG------EATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 404 ~~~~vi~~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
++++||+++.|. +...|+||+||+||.|+.|.++.++.
T Consensus 334 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 377 (412)
T 3fht_A 334 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 377 (412)
T ss_dssp TEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred CCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEc
Confidence 999999999994 56899999999999999999998863
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.9e-52 Score=387.80 Aligned_cols=340 Identities=30% Similarity=0.502 Sum_probs=285.0
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcC-CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCC
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 93 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~-~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~ 93 (444)
.+.++|+++++++.+.+.| ..+||..|+++|.++++.++++ +++++.+|||+|||++++++++..+.. ..+
T Consensus 3 ~~~~~f~~~~l~~~~~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~ 74 (367)
T 1hv8_A 3 VEYMNFNELNLSDNILNAI-RNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNG 74 (367)
T ss_dssp CCCCCGGGSSCCHHHHHHH-HHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSS
T ss_pred cccCchhhcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCC
Confidence 3567899999999999999 5569999999999999999987 799999999999999999998887654 346
Q ss_pred ceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEE
Q 013392 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (444)
Q Consensus 94 ~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lv 173 (444)
.++||++|+++|+.|+.+++.+++...+ .......++.........+. +++|+|+||+++.+.+.. ....+.++++|
T Consensus 75 ~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~-~~~~~~~~~~i 151 (367)
T 1hv8_A 75 IEAIILTPTRELAIQVADEIESLKGNKN-LKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINR-GTLNLKNVKYF 151 (367)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSSC-CCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHT-TCSCTTSCCEE
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHhCCCC-ceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHc-CCcccccCCEE
Confidence 6799999999999999999999876543 34455666665555444443 679999999999998876 45556789999
Q ss_pred EEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCC
Q 013392 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (444)
Q Consensus 174 V~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (444)
|+||+|++.+.++...+..++..+.. ..+++++|||++.........++.++..+.....
T Consensus 152 IiDEah~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----- 211 (367)
T 1hv8_A 152 ILDEADEMLNMGFIKDVEKILNACNK---------------DKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----- 211 (367)
T ss_dssp EEETHHHHHTTTTHHHHHHHHHTSCS---------------SCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS-----
T ss_pred EEeCchHhhhhchHHHHHHHHHhCCC---------------CceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC-----
Confidence 99999999888888888888777655 7899999999998877777766665554322211
Q ss_pred cccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhh
Q 013392 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (444)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~ 333 (444)
..+.+.+.......+...+...+. ..+.++||||++++.++
T Consensus 212 ----------------------------------~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~~~lvf~~~~~~~~ 252 (367)
T 1hv8_A 212 ----------------------------------ANIEQSYVEVNENERFEALCRLLK-----NKEFYGLVFCKTKRDTK 252 (367)
T ss_dssp ----------------------------------SSSEEEEEECCGGGHHHHHHHHHC-----STTCCEEEECSSHHHHH
T ss_pred ----------------------------------CCceEEEEEeChHHHHHHHHHHHh-----cCCCcEEEEECCHHHHH
Confidence 133445555666677777776664 45679999999999999
Q ss_pred hhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC
Q 013392 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (444)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~ 413 (444)
.+++.|++. +..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++
T Consensus 253 ~l~~~L~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~ 315 (367)
T 1hv8_A 253 ELASMLRDI-----------------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL 315 (367)
T ss_dssp HHHHHHHHT-----------------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC
T ss_pred HHHHHHHhc-----------------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC
Confidence 999999887 888999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhcccccccCCCcccccceEE
Q 013392 414 AGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 414 ~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
|.|...|.||+||+||.|++|.++.++.
T Consensus 316 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 343 (367)
T 1hv8_A 316 PQNPESYMHRIGRTGRAGKKGKAISIIN 343 (367)
T ss_dssp CSCHHHHHHHSTTTCCSSSCCEEEEEEC
T ss_pred CCCHHHhhhcccccccCCCccEEEEEEc
Confidence 9999999999999999999999988763
No 8
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.3e-52 Score=396.86 Aligned_cols=345 Identities=29% Similarity=0.444 Sum_probs=275.1
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
..+|+++++++.+.+.| ..+|+..|+++|.++++.++.++++++.+|||+|||+++++++++.+... ..+.++
T Consensus 39 ~~~f~~~~l~~~~~~~l-~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~------~~~~~~ 111 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGI-YAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD------LKATQA 111 (414)
T ss_dssp CCCGGGGCCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT------SCSCCE
T ss_pred hcCHhhCCCCHHHHHHH-HHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc------CCceeE
Confidence 36799999999999999 56799999999999999999999999999999999999999999877542 245679
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhc-CCCcEEEeCchHHHHHHhccCccccCCccEEEE
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~ 175 (444)
||++|+++|+.|+.+++++++...+ .......++.........+. .+++|+|+||+++.+.+.. ....+..+++||+
T Consensus 112 lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vVi 189 (414)
T 3eiq_A 112 LVLAPTRELAQQIQKVVMALGDYMG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVL 189 (414)
T ss_dssp EEECSSHHHHHHHHHHHHHHGGGSC-CCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEE
T ss_pred EEEeChHHHHHHHHHHHHHHhcccC-ceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEEEE
Confidence 9999999999999999999876554 34455556665555555554 6789999999999998876 5556678999999
Q ss_pred echhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcc
Q 013392 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (444)
Q Consensus 176 DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
||+|++.+.++...+..++..++. ..|++++|||++.........++.++..+.......
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~----- 249 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLNS---------------NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEEL----- 249 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSCT---------------TCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCC-----
T ss_pred ECHHHhhccCcHHHHHHHHHhCCC---------------CCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCcc-----
Confidence 999999988888888888877765 889999999999988888888877776654433321
Q ss_pred cccccCccccccccccCCCccccccCccccccccceeeEEEcCC-CCcHHHHHHHHHhhcccccCceEEEEecccchhhh
Q 013392 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (444)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~ 334 (444)
....+.+.+..... ..+...+..++.. ....++||||++++.++.
T Consensus 250 ------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~lvf~~~~~~~~~ 295 (414)
T 3eiq_A 250 ------------------------------TLEGIRQFYINVEREEWKLDTLCDLYET----LTITQAVIFINTRRKVDW 295 (414)
T ss_dssp ------------------------------CTTSCCEEEEECSSSTTHHHHHHHHHHS----SCCSSCEEECSCHHHHHH
T ss_pred ------------------------------CCCCceEEEEEeChHHhHHHHHHHHHHh----CCCCcEEEEeCCHHHHHH
Confidence 11233444444443 3477777766665 355799999999999999
Q ss_pred hhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCC
Q 013392 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (444)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~ 414 (444)
+++.|.+. ++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 296 l~~~l~~~-----------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p 358 (414)
T 3eiq_A 296 LTEKMHAR-----------------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 358 (414)
T ss_dssp HHHHHHTT-----------------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCC
T ss_pred HHHHHHhc-----------------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCC
Confidence 99999887 8889999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcccccccCCCcccccceEE
Q 013392 415 GEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 415 ~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
.+...|+||+||+||.|++|.++.++.
T Consensus 359 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 385 (414)
T 3eiq_A 359 TNRENYIHRIGRGGRFGRKGVAINMVT 385 (414)
T ss_dssp SSTHHHHHHSCCC-------CEEEEEC
T ss_pred CCHHHhhhhcCcccCCCCCceEEEEEc
Confidence 999999999999999999999988763
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=5.8e-51 Score=384.96 Aligned_cols=341 Identities=24% Similarity=0.432 Sum_probs=276.4
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcC--CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCc
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (444)
..+|+++++++.+.+.| ..+||..|+++|.++++.++.+ +++++++|||+|||++++++++..+... ..+.
T Consensus 4 ~~~f~~~~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~------~~~~ 76 (395)
T 3pey_A 4 AKSFDELGLAPELLKGI-YAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE------DASP 76 (395)
T ss_dssp CCSSTTSCCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT------CCSC
T ss_pred ccCHhhCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC------CCCc
Confidence 36899999999999999 5679999999999999999987 8999999999999999999998877542 2456
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEE
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV 174 (444)
++||++|+++|+.|+.+.++++....+ .......++..... ...+++|+|+||+++...+.. ....+.++++||
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iI 150 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFTK-ITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFV 150 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSC-CCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhcccC-eeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHc-CCcccccCCEEE
Confidence 799999999999999999999876544 33333333322211 133578999999999998876 555678899999
Q ss_pred EechhHhhh-cchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCC
Q 013392 175 FDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (444)
Q Consensus 175 ~DE~h~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (444)
+||+|++.+ .++...+..+...++. ..|++++|||+++....+.......+..+.......
T Consensus 151 iDEah~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--- 212 (395)
T 3pey_A 151 LDEADNMLDQQGLGDQCIRVKRFLPK---------------DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEV--- 212 (395)
T ss_dssp EETHHHHHHSTTHHHHHHHHHHTSCT---------------TCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGC---
T ss_pred EEChhhhcCccccHHHHHHHHHhCCC---------------CcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccc---
Confidence 999999887 4566777777766655 789999999999988888887777766654433221
Q ss_pred cccccccCccccccccccCCCccccccCccccccccceeeEEEcCC-CCcHHHHHHHHHhhcccccCceEEEEecccchh
Q 013392 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (444)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~ 332 (444)
....+.+.+..... ..+...+..++. ...+.++||||++++.+
T Consensus 213 --------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~lvf~~~~~~~ 256 (395)
T 3pey_A 213 --------------------------------NVDAIKQLYMDCKNEADKFDVLTELYG----LMTIGSSIIFVATKKTA 256 (395)
T ss_dssp --------------------------------SCTTEEEEEEECSSHHHHHHHHHHHHT----TTTSSEEEEECSCHHHH
T ss_pred --------------------------------ccccccEEEEEcCchHHHHHHHHHHHH----hccCCCEEEEeCCHHHH
Confidence 11223344444432 334444444443 34568999999999999
Q ss_pred hhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEcc
Q 013392 333 DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (444)
Q Consensus 333 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~ 412 (444)
+.+++.|++. +..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 257 ~~l~~~l~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 319 (395)
T 3pey_A 257 NVLYGKLKSE-----------------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD 319 (395)
T ss_dssp HHHHHHHHHT-----------------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESS
T ss_pred HHHHHHHHhc-----------------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcC
Confidence 9999999887 78899999999999999999999999999999999999999999999999999
Q ss_pred CCC------CcchhhhcccccccCCCcccccceEE
Q 013392 413 SAG------EATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 413 ~~~------s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
.|. |...|+||+||+||.|++|.++.++.
T Consensus 320 ~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 354 (395)
T 3pey_A 320 LPTLANGQADPATYIHRIGRTGRFGRKGVAISFVH 354 (395)
T ss_dssp CCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred CCCCCcCCCCHHHhhHhccccccCCCCceEEEEEe
Confidence 998 99999999999999999999988863
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.8e-51 Score=402.64 Aligned_cols=371 Identities=29% Similarity=0.416 Sum_probs=286.8
Q ss_pred cccCCccccC----CCHHHHHHHHHHcCCCCCCHHHHhHHHhHh--cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCC
Q 013392 15 FASCSFSSLG----LHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRI 88 (444)
Q Consensus 15 ~~~~~~~~~~----l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~ 88 (444)
....+|+++. |++++.+.+ ..+||..|+++|.++++.++ .++++++.+|||+|||+++++++++.+......
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~- 91 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAI-TRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD- 91 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHH-HTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-
T ss_pred CCCcCHHHHhhcCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc-
Confidence 3455666665 999999999 77799999999999999999 778999999999999999999999988764321
Q ss_pred CCCCCceEEEEeccHHHHHHHHHHHHHHhcc---cCceeeEEEeCCcchhHHHHHh-cCCCcEEEeCchHHHHHHhccCc
Q 013392 89 DRSSGTFALVLVPTRELCLQVYEILHKLLHR---FHWIVPGYVMGGENRSKEKARL-RKGISILVATPGRLLDHLKHTSS 164 (444)
Q Consensus 89 ~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~l~~~~~ 164 (444)
...+.++|||+|+++|+.|+.+++.+++.. ..........++.........+ ..+++|+|+||++|...+.....
T Consensus 92 -~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~ 170 (579)
T 3sqw_A 92 -SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSN 170 (579)
T ss_dssp -STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHH
T ss_pred -ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccc
Confidence 133568999999999999999999998642 2234455666776666655555 34789999999999998876444
Q ss_pred cccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEc
Q 013392 165 FLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244 (444)
Q Consensus 165 ~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~ 244 (444)
..++.+++||+||||++.++++...+..+...++.... ......|++++|||+++....+...++..+..+.
T Consensus 171 ~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~--------~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~ 242 (579)
T 3sqw_A 171 KFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS--------KSADNIKTLLFSATLDDKVQKLANNIMNKKECLF 242 (579)
T ss_dssp HHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS--------SCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEE
T ss_pred cccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhc--------ccccCceEEEEeccCChHHHHHHHHHcCCCceEE
Confidence 56678999999999999999888888888777653110 1112679999999999988888887777766544
Q ss_pred ccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCC-CCcHHHHHHHHH-hhcccccCceE
Q 013392 245 LDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILK-HLFDTEVSQKL 322 (444)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~-~~~~~~~~~~~ 322 (444)
+........ .....+.+.+..... ..+...+...+. .......+.++
T Consensus 243 ~~~~~~~~~-------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 291 (579)
T 3sqw_A 243 LDTVDKNEP-------------------------------EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKA 291 (579)
T ss_dssp EESSCSSSC-------------------------------SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred EeecCcccc-------------------------------ccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcE
Confidence 332210000 111223333333332 222222333222 22223556899
Q ss_pred EEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCC
Q 013392 323 VVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDF 402 (444)
Q Consensus 323 ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di 402 (444)
||||+++..++.+++.|...... ++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+
T Consensus 292 iVF~~t~~~~~~l~~~L~~~~~~--------------~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDi 357 (579)
T 3sqw_A 292 IIFAPTVKFTSFLCSILKNEFKK--------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF 357 (579)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTT--------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCC
T ss_pred EEECCcHHHHHHHHHHHHHhhcC--------------CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCc
Confidence 99999999999999999875221 6789999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 403 PKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 403 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
|++++||++++|.+...|+||+||+||.|+.|.++.++.
T Consensus 358 p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~ 396 (579)
T 3sqw_A 358 PNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFIC 396 (579)
T ss_dssp TTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEE
T ss_pred ccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEc
Confidence 999999999999999999999999999999999998864
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3e-52 Score=393.52 Aligned_cols=346 Identities=28% Similarity=0.440 Sum_probs=171.6
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCc
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (444)
-...+|+++++++.+.+.+ ..+||..|+++|.++++.+++++++++.+|||+|||++++++++..+... ..+.
T Consensus 18 ~~~~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~------~~~~ 90 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGV-FGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------VKAP 90 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHH-HHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT------CCSC
T ss_pred cccCChhhcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc------CCCC
Confidence 3457899999999999999 56799999999999999999999999999999999999999998877542 2456
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEE
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV 174 (444)
++||++|+++|+.|+.+++.++....+ .....+.++.........+. +++|+|+||+++...+.. ....+.++++||
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vI 167 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFI 167 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSC-CCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHT-TSSCCTTCCEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCC-eeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEE
Confidence 799999999999999999999876554 44455566655544443333 578999999999998876 455567899999
Q ss_pred EechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCc
Q 013392 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (444)
Q Consensus 175 ~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (444)
+||+|++.+.++...+..++..++. ..+++++|||+++........++..|..+........
T Consensus 168 iDEah~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 229 (394)
T 1fuu_A 168 LDEADEMLSSGFKEQIYQIFTLLPP---------------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELT--- 229 (394)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCT---------------TCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-------
T ss_pred EEChHHhhCCCcHHHHHHHHHhCCC---------------CceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcccc---
Confidence 9999999888888888888888765 7899999999999888877777777766544332210
Q ss_pred ccccccCccccccccccCCCccccccCccccccccceeeEEEcCCC-CcHHHHHHHHHhhcccccCceEEEEecccchhh
Q 013392 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG-SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (444)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~ 333 (444)
...+.+.+..+... .+...+..++.. ....++||||++++.++
T Consensus 230 --------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~lVf~~~~~~~~ 273 (394)
T 1fuu_A 230 --------------------------------LEGIKQFYVNVEEEEYKYECLTDLYDS----ISVTQAVIFCNTRRKVE 273 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------CCCceEEEEEcCchhhHHHHHHHHHhc----CCCCcEEEEECCHHHHH
Confidence 01112222222222 234444444433 34579999999999999
Q ss_pred hhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccC
Q 013392 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (444)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~ 413 (444)
.+++.|++. +..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++
T Consensus 274 ~l~~~L~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~ 336 (394)
T 1fuu_A 274 ELTTKLRND-----------------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL 336 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHc-----------------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 999999876 778999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhcccccccCCCcccccceEE
Q 013392 414 AGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 414 ~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
|.+...|+||+||+||.|++|.++.++.
T Consensus 337 p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 364 (394)
T 1fuu_A 337 PANKENYIHRIGRGGRFGRKGVAINFVT 364 (394)
T ss_dssp ----------------------------
T ss_pred CCCHHHHHHHcCcccCCCCCceEEEEEc
Confidence 9999999999999999999999988763
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.1e-50 Score=399.48 Aligned_cols=369 Identities=29% Similarity=0.414 Sum_probs=284.4
Q ss_pred cCCccccC----CCHHHHHHHHHHcCCCCCCHHHHhHHHhHh--cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCC
Q 013392 17 SCSFSSLG----LHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDR 90 (444)
Q Consensus 17 ~~~~~~~~----l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~ 90 (444)
..+|+++. +++++.+.+ ..+||..|+++|.++++.++ .++++++++|||+|||+++++++++.+...... .
T Consensus 67 ~~~~~~l~~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~ 143 (563)
T 3i5x_A 67 EVTLDSLLEEGVLDKEIHKAI-TRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--S 143 (563)
T ss_dssp CCCHHHHHHTTSSCHHHHHHH-HTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--S
T ss_pred CcCHHHHhhcCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--c
Confidence 34566654 999999999 67799999999999999999 678999999999999999999999988764321 1
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHHHhccc---CceeeEEEeCCcchhHHHHHh-cCCCcEEEeCchHHHHHHhccCccc
Q 013392 91 SSGTFALVLVPTRELCLQVYEILHKLLHRF---HWIVPGYVMGGENRSKEKARL-RKGISILVATPGRLLDHLKHTSSFL 166 (444)
Q Consensus 91 ~~~~~vlil~P~~~L~~q~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~l~~~~~~~ 166 (444)
..+.++|||+|+++|+.|+.+.++++.... .........++.........+ ..+++|+|+||+++.+.+.+.....
T Consensus 144 ~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 144 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 235689999999999999999999975432 224455666676666555554 4578999999999999887644456
Q ss_pred cCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEccc
Q 013392 167 HTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246 (444)
Q Consensus 167 ~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~ 246 (444)
++.+++||+||||++.++++...+..+...++.... ......|++++|||+++....+...++..+..+.+.
T Consensus 224 ~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~--------~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~ 295 (563)
T 3i5x_A 224 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS--------KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 295 (563)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS--------SCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEE
T ss_pred cccceEEEEeCHHHHhccchHHHHHHHHHhhhhccc--------cCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEe
Confidence 678999999999999999888888888777643111 111267999999999998888888777766554432
Q ss_pred CcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCC-CCcHHHHHHHH-HhhcccccCceEEE
Q 013392 247 EKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSIL-KHLFDTEVSQKLVV 324 (444)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l-~~~~~~~~~~~~iv 324 (444)
...... ......+.+.+..... ..+.......+ ........+.++||
T Consensus 296 ~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iV 344 (563)
T 3i5x_A 296 TVDKNE-------------------------------PEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAII 344 (563)
T ss_dssp SSCSSS-------------------------------CSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCCCC-------------------------------ccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEE
Confidence 221000 0011223333333332 22222233322 22222356789999
Q ss_pred EecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCC
Q 013392 325 FFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK 404 (444)
Q Consensus 325 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~ 404 (444)
||+++..++.+++.|.+.... ++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|+
T Consensus 345 F~~s~~~~~~l~~~L~~~~~~--------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~ 410 (563)
T 3i5x_A 345 FAPTVKFTSFLCSILKNEFKK--------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPN 410 (563)
T ss_dssp ECSCHHHHHHHHHHHHHHHTT--------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTT
T ss_pred EcCcHHHHHHHHHHHHHhccC--------------CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCccc
Confidence 999999999999999875221 678999999999999999999999999999999999999999999
Q ss_pred CcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 405 VKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 405 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+++||+++.|.+...|+||+||+||.|+.|.++.++.
T Consensus 411 v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~ 447 (563)
T 3i5x_A 411 VHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFIC 447 (563)
T ss_dssp CCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEE
T ss_pred CCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEc
Confidence 9999999999999999999999999999999998874
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.1e-52 Score=402.24 Aligned_cols=349 Identities=23% Similarity=0.389 Sum_probs=169.9
Q ss_pred hhccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcC--CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCC
Q 013392 12 KEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRID 89 (444)
Q Consensus 12 ~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~ 89 (444)
.+.+...+|++++|++.+.+.| ..+||..|+++|.++++.++.+ +++++++|||+|||++|+++++..+...
T Consensus 86 ~~~~~~~~f~~~~l~~~l~~~l-~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~----- 159 (479)
T 3fmp_B 86 SPLYSVKSFEELRLKPQLLQGV-YAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA----- 159 (479)
T ss_dssp SCCCCCCCSGGGTCCHHHHHHH-HHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----
T ss_pred CCccCcCCHHHcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----
Confidence 3445567999999999999999 5679999999999999999986 8999999999999999999998876542
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCC
Q 013392 90 RSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTN 169 (444)
Q Consensus 90 ~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~ 169 (444)
..++++||++|+++|+.|+.+.+.++.............++...... ...+.+|+|+||+++.+++.+.+.+.+.+
T Consensus 160 -~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 160 -NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred -CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 23457999999999999999999998776554555555544433211 13356899999999999997766777789
Q ss_pred ccEEEEechhHhhh-cchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCc
Q 013392 170 LRWIIFDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (444)
Q Consensus 170 ~~lvV~DE~h~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~ 248 (444)
+++||+||+|++.+ .++......+...++. .+|++++|||++.....+...++.++..+.+...
T Consensus 236 ~~~iViDEah~~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~ 300 (479)
T 3fmp_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPR---------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE 300 (479)
T ss_dssp CCEEEECCHHHHHTSTTHHHHHHHHHTTSCT---------------TSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--
T ss_pred CCEEEEECHHHHhhcCCcHHHHHHHHhhCCc---------------cceEEEEeCCCCHHHHHHHHHHcCCCeEEecccc
Confidence 99999999999887 4566666666666554 7899999999999988888888888877655443
Q ss_pred CCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCC-CCcHHHHHHHHHhhcccccCceEEEEec
Q 013392 249 KLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFS 327 (444)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~ivf~~ 327 (444)
.. ....+.+.+..++. ..+...+..++.. ....++||||+
T Consensus 301 ~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~lvF~~ 341 (479)
T 3fmp_B 301 EE-----------------------------------TLDTIKQYYVLCSSRDEKFQALCNLYGA----ITIAQAMIFCH 341 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc-----------------------------------CcCCceEEEEEeCCHHHHHHHHHHHHhh----ccCCceEEEeC
Confidence 20 11222333333322 3344444444433 34579999999
Q ss_pred ccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcE
Q 013392 328 TCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407 (444)
Q Consensus 328 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~ 407 (444)
++..++.+++.|... ++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 342 s~~~~~~l~~~L~~~-----------------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~ 404 (479)
T 3fmp_B 342 TRKTASWLAAELSKE-----------------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSV 404 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHhC-----------------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCE
Confidence 999999999999886 788999999999999999999999999999999999999999999999
Q ss_pred EEEccCCC------CcchhhhcccccccCCCcccccceEE
Q 013392 408 IIQYDSAG------EATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 408 vi~~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
||+++.|. +...|+||+||+||.|+.|.++.|+.
T Consensus 405 VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~ 444 (479)
T 3fmp_B 405 VINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 444 (479)
T ss_dssp ----------------------------------------
T ss_pred EEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 99999994 66899999999999999999998864
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.5e-49 Score=361.99 Aligned_cols=321 Identities=31% Similarity=0.463 Sum_probs=260.7
Q ss_pred CCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHH
Q 013392 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (444)
Q Consensus 25 l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~ 104 (444)
+++++.+.| +.+||..|+++|.++++.+++++++++.+|||+|||++++++++.. +.++||++|+++
T Consensus 1 l~~~i~~~l-~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~ 67 (337)
T 2z0m_A 1 MNEKIEQAI-REMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTRE 67 (337)
T ss_dssp CCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHH
T ss_pred CCHHHHHHH-HHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHH
Confidence 578999999 6779999999999999999999999999999999999999888763 345999999999
Q ss_pred HHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhc
Q 013392 105 LCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184 (444)
Q Consensus 105 L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~ 184 (444)
|+.|+.++++++....+ .....+.++.........+ .+++|+|+||+++.+.+.. ....+.++++||+||+|++.+.
T Consensus 68 L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~ 144 (337)
T 2z0m_A 68 LTRQVASHIRDIGRYMD-TKVAEVYGGMPYKAQINRV-RNADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEM 144 (337)
T ss_dssp HHHHHHHHHHHHTTTSC-CCEEEECTTSCHHHHHHHH-TTCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHhhhcC-CcEEEEECCcchHHHHhhc-CCCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhcc
Confidence 99999999999876544 3445556665555444444 3489999999999998776 4555678999999999999988
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccc
Q 013392 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLES 264 (444)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (444)
++...+..++...+. ..+++++|||++.........++.++..+....
T Consensus 145 ~~~~~~~~~~~~~~~---------------~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~----------------- 192 (337)
T 2z0m_A 145 GFIDDIKIILAQTSN---------------RKITGLFSATIPEEIRKVVKDFITNYEEIEACI----------------- 192 (337)
T ss_dssp TCHHHHHHHHHHCTT---------------CSEEEEEESCCCHHHHHHHHHHSCSCEEEECSG-----------------
T ss_pred ccHHHHHHHHhhCCc---------------ccEEEEEeCcCCHHHHHHHHHhcCCceeeeccc-----------------
Confidence 888888888887765 778899999999987777776666554432110
Q ss_pred cccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhccc
Q 013392 265 DVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQW 344 (444)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~ 344 (444)
....+.+.+..+....+. ....+.. ..+.++||||++++.++.+++.|.+
T Consensus 193 ---------------------~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~lvf~~~~~~~~~l~~~l~~--- 242 (337)
T 2z0m_A 193 ---------------------GLANVEHKFVHVKDDWRS--KVQALRE----NKDKGVIVFVRTRNRVAKLVRLFDN--- 242 (337)
T ss_dssp ---------------------GGGGEEEEEEECSSSSHH--HHHHHHT----CCCSSEEEECSCHHHHHHHHTTCTT---
T ss_pred ---------------------ccCCceEEEEEeChHHHH--HHHHHHh----CCCCcEEEEEcCHHHHHHHHHHhhh---
Confidence 012233334444333322 2233332 5578999999999999999988853
Q ss_pred CCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcc
Q 013392 345 SPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRY 424 (444)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~ 424 (444)
+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.|...|+||+
T Consensus 243 ------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~ 304 (337)
T 2z0m_A 243 ------------------AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRI 304 (337)
T ss_dssp ------------------EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHH
T ss_pred ------------------hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhc
Confidence 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcccccceEE
Q 013392 425 LKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 425 GR~~R~g~~g~~~~~i~ 441 (444)
||+||.|++|.++.++.
T Consensus 305 GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 305 GRTGRMGRKGEAITFIL 321 (337)
T ss_dssp TTBCGGGCCEEEEEEES
T ss_pred CccccCCCCceEEEEEe
Confidence 99999999999988763
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.4e-47 Score=373.46 Aligned_cols=335 Identities=16% Similarity=0.193 Sum_probs=250.8
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
.-.+.++++++.+.+.|.+.|||..|+++|.++++.+++++++++.+|||+|||++|+++++.. ..++
T Consensus 20 ~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------~g~~ 87 (591)
T 2v1x_A 20 AWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------DGFT 87 (591)
T ss_dssp GGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------------SSEE
T ss_pred ccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------------CCcE
Confidence 3344568899999999987799999999999999999999999999999999999999988651 3469
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHH---H---hcCCCcEEEeCchHHHH---HHhcc-Cccc
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA---R---LRKGISILVATPGRLLD---HLKHT-SSFL 166 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~iii~T~~~l~~---~l~~~-~~~~ 166 (444)
|||+|+++|+.|+.+.+.++. .....+.++........ . ...+.+|+|+||++|.. ++... ....
T Consensus 88 lVisP~~~L~~q~~~~l~~~g-----i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~ 162 (591)
T 2v1x_A 88 LVICPLISLMEDQLMVLKQLG-----ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE 162 (591)
T ss_dssp EEECSCHHHHHHHHHHHHHHT-----CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHhcC-----CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhh
Confidence 999999999999999999872 34455555554443322 1 24568999999998742 22111 2334
Q ss_pred cCCccEEEEechhHhhhcc--hhHHHH---HHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCe
Q 013392 167 HTNLRWIIFDEADRILELG--FGKEIE---EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV 241 (444)
Q Consensus 167 ~~~~~lvV~DE~h~~~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~ 241 (444)
+..+++||+||||++.+++ |..... .+....+ ..+++++|||+++.........+..+.
T Consensus 163 ~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~----------------~~~ii~lSAT~~~~v~~~i~~~l~~~~ 226 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP----------------NASLIGLTATATNHVLTDAQKILCIEK 226 (591)
T ss_dssp TTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCT----------------TSEEEEEESSCCHHHHHHHHHHTTCCS
T ss_pred ccCCcEEEEECcccccccccccHHHHHHHHHHHHhCC----------------CCcEEEEecCCCHHHHHHHHHHhCCCC
Confidence 5689999999999988765 333322 2222222 678999999999876665554443322
Q ss_pred EEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCC--CCcHHHHHHHHHhhcccccC
Q 013392 242 LIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC--GSRLAVLLSILKHLFDTEVS 319 (444)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~l~~~l~~~~~~~~~ 319 (444)
...+.... ...++......... ..+...+...+.. ...+
T Consensus 227 ~~~~~~~~------------------------------------~r~nl~~~v~~~~~~~~~~~~~l~~~l~~---~~~~ 267 (591)
T 2v1x_A 227 CFTFTASF------------------------------------NRPNLYYEVRQKPSNTEDFIEDIVKLING---RYKG 267 (591)
T ss_dssp CEEEECCC------------------------------------CCTTEEEEEEECCSSHHHHHHHHHHHHTT---TTTT
T ss_pred cEEEecCC------------------------------------CCcccEEEEEeCCCcHHHHHHHHHHHHHH---hccC
Confidence 11111110 00111111111111 1123333343432 2457
Q ss_pred ceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccC
Q 013392 320 QKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARG 399 (444)
Q Consensus 320 ~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G 399 (444)
.++||||++++.++.+++.|... ++.+..+||+++..+|.++++.|.+|+.+|||||+++++|
T Consensus 268 ~~~IVf~~sr~~~e~la~~L~~~-----------------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~G 330 (591)
T 2v1x_A 268 QSGIIYCFSQKDSEQVTVSLQNL-----------------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMG 330 (591)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTT
T ss_pred CCeEEEeCcHHHHHHHHHHHHHC-----------------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcC
Confidence 89999999999999999999887 8899999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceE
Q 013392 400 LDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 400 ~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
+|+|++++||++++|.|...|+||+||+||.|++|.|+.+.
T Consensus 331 ID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~ 371 (591)
T 2v1x_A 331 IDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYY 371 (591)
T ss_dssp CCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred CCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEE
Confidence 99999999999999999999999999999999999988774
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.6e-47 Score=369.75 Aligned_cols=328 Identities=18% Similarity=0.249 Sum_probs=254.0
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEE
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vl 97 (444)
.+|+++++++++.+.|.+.|||..|+++|.++++.+++++++++.+|||+|||++++++++.. ..++|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~l 69 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTV 69 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCEE
Confidence 479999999999999977799999999999999999999999999999999999999988752 24589
Q ss_pred EEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHH----HHhcCCCcEEEeCchHHHHHHhccCccccCCccEE
Q 013392 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK----ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (444)
Q Consensus 98 il~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lv 173 (444)
|++|+++|+.|+.+.++++. .....+.++....... ....+..+|+|+||+++...... ..+...++++|
T Consensus 70 vi~P~~aL~~q~~~~l~~~g-----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~v 143 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQANG-----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLL 143 (523)
T ss_dssp EECSCHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEE
T ss_pred EECChHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEE
Confidence 99999999999999998862 3344455544433322 22345689999999998532111 11223688999
Q ss_pred EEechhHhhhcc--hhHHHH---HHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHH-HHH-hhcCCCeEEccc
Q 013392 174 IFDEADRILELG--FGKEIE---EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH-LAK-ISLETPVLIGLD 246 (444)
Q Consensus 174 V~DE~h~~~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~-~~~-~~~~~~~~~~~~ 246 (444)
|+||+|++.+++ +..... .+...++ ..+++++|||+++.... +.. ..+.++..+...
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~----------------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~ 207 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLRQRFP----------------TLPFMALTATADDTTRQDIVRLLGLNDPLIQISS 207 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHHHHCT----------------TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC
T ss_pred EEeCccccCcCCCccHHHHHHHHHHHHhCC----------------CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC
Confidence 999999998765 333332 3333332 57889999999886544 222 333344332111
Q ss_pred CcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEe
Q 013392 247 EKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFF 326 (444)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~ 326 (444)
.. ..++ .+.......+...+...+.. ..+.++||||
T Consensus 208 ~~--------------------------------------r~~l--~~~v~~~~~~~~~l~~~l~~----~~~~~~IVf~ 243 (523)
T 1oyw_A 208 FD--------------------------------------RPNI--RYMLMEKFKPLDQLMRYVQE----QRGKSGIIYC 243 (523)
T ss_dssp CC--------------------------------------CTTE--EEEEEECSSHHHHHHHHHHH----TTTCCEEEEC
T ss_pred CC--------------------------------------CCce--EEEEEeCCCHHHHHHHHHHh----cCCCcEEEEe
Confidence 10 0111 12223345566667776665 3567999999
Q ss_pred cccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCc
Q 013392 327 STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVK 406 (444)
Q Consensus 327 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~ 406 (444)
++++.++.+++.|... ++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|+++
T Consensus 244 ~sr~~~e~l~~~L~~~-----------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~ 306 (523)
T 1oyw_A 244 NSRAKVEDTAARLQSK-----------------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVR 306 (523)
T ss_dssp SSHHHHHHHHHHHHHT-----------------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCC
T ss_pred CCHHHHHHHHHHHHHC-----------------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCcc
Confidence 9999999999999887 88999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCcchhhhcccccccCCCcccccceE
Q 013392 407 CIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 407 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
+||+++.|.|...|+||+||+||.|++|.++.+.
T Consensus 307 ~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~ 340 (523)
T 1oyw_A 307 FVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (523)
T ss_dssp EEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHhccccCCCCCceEEEEe
Confidence 9999999999999999999999999999988765
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-48 Score=376.00 Aligned_cols=339 Identities=21% Similarity=0.352 Sum_probs=232.5
Q ss_pred CccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcC--CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 19 ~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
.|...++++++.+.+ ...|+..|+++|.++++.++++ +++++.+|||+|||++++++++..+... ..+.++
T Consensus 120 ~~~~~~l~~~~~~~l-~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~------~~~~~v 192 (508)
T 3fho_A 120 XXXXXXXXXXXXXXX-XXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS------VPKPQA 192 (508)
T ss_dssp --------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT------CCSCCE
T ss_pred ccccccccccccccc-ccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC------CCCceE
Confidence 456677889999999 4559999999999999999987 9999999999999999999999887552 235579
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
||++|+++|+.|+.+++++++....... ....++. .......+++|+|+||+++...+.. ....+..+++||+|
T Consensus 193 Lvl~P~~~L~~Q~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lIIiD 266 (508)
T 3fho_A 193 ICLAPSRELARQIMDVVTEMGKYTEVKT-AFGIKDS----VPKGAKIDAQIVIGTPGTVMDLMKR-RQLDARDIKVFVLD 266 (508)
T ss_dssp EEECSCHHHHHHHHHHHHHHSTTSSCCE-EC--------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEC
T ss_pred EEEECcHHHHHHHHHHHHHhCCccCeeE-EEEeCCc----ccccccCCCCEEEECHHHHHHHHHc-CCccccCCCEEEEe
Confidence 9999999999999999999876543222 1111111 1122234689999999999998876 55567889999999
Q ss_pred chhHhhh-cchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcc
Q 013392 177 EADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (444)
Q Consensus 177 E~h~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
|+|++.+ .++...+..+...++. ..|++++|||+++....+...+..++..+.......
T Consensus 267 EaH~~~~~~~~~~~~~~i~~~~~~---------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~----- 326 (508)
T 3fho_A 267 EADNMLDQQGLGDQSMRIKHLLPR---------------NTQIVLFSATFSERVEKYAERFAPNANEIRLKTEEL----- 326 (508)
T ss_dssp CHHHHTTC--CHHHHHHHHHHSCT---------------TCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC------
T ss_pred chhhhcccCCcHHHHHHHHHhCCc---------------CCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccC-----
Confidence 9999877 4677777778877765 789999999999988888888887777665443321
Q ss_pred cccccCccccccccccCCCccccccCccccccccceeeEEEcC-CCCcHHHHHHHHHhhcccccCceEEEEecccchhhh
Q 013392 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP-CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (444)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~ 334 (444)
....+.+.+.... ...+...+..++.. ..+.++||||+++.+++.
T Consensus 327 ------------------------------~~~~~~~~~~~~~~~~~k~~~l~~ll~~----~~~~~~LVF~~s~~~a~~ 372 (508)
T 3fho_A 327 ------------------------------SVEGIKQLYMDCQSEEHKYNVLVELYGL----LTIGQSIIFCKKKDTAEE 372 (508)
T ss_dssp ---------------------------------CCCCEEEEC--CHHHHHHHHHHHC-------CCCEEEBCSSTTTTTH
T ss_pred ------------------------------CcccceEEEEECCchHHHHHHHHHHHHh----cCCCcEEEEECCHHHHHH
Confidence 0112223333332 23344444444433 456799999999999999
Q ss_pred hhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCC
Q 013392 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (444)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~ 414 (444)
+++.|.+. +..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 373 l~~~L~~~-----------------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p 435 (508)
T 3fho_A 373 IARRMTAD-----------------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMP 435 (508)
T ss_dssp HHHHHTTT-----------------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----
T ss_pred HHHHHHhC-----------------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCC
Confidence 99999876 7889999999999999999999999999999999999999999999999999999
Q ss_pred ------CCcchhhhcccccccCCCcccccceEE
Q 013392 415 ------GEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 415 ------~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
.+...|+||+||+||.|+.|.++.++.
T Consensus 436 ~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~ 468 (508)
T 3fho_A 436 LDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVH 468 (508)
T ss_dssp CC-----CTHHHHHTTSCCC-----CEEEEEEC
T ss_pred CcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEe
Confidence 789999999999999999999998864
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.1e-46 Score=353.92 Aligned_cols=325 Identities=17% Similarity=0.229 Sum_probs=240.6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHH
Q 013392 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~ 106 (444)
+.+.+.+++.+|+. |+++|.++++.+++++++++++|||+|||++++++++... ..+.++||++|+++|+
T Consensus 8 ~~~~~~l~~~~~~~-~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---------~~~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 8 EDFRSFFKKKFGKD-LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPTVTLV 77 (414)
T ss_dssp HHHHHHHHHHHSSC-CCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---------TTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---------cCCCEEEEEECCHHHH
Confidence 45777887878995 9999999999999999999999999999998888877765 2366799999999999
Q ss_pred HHHHHHHHHHhcccCceeeEEEeCCcch---hHHHHHhcCC-CcEEEeCchHHHHHHhccCccccCCccEEEEechhHhh
Q 013392 107 LQVYEILHKLLHRFHWIVPGYVMGGENR---SKEKARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 107 ~q~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~ 182 (444)
.|+.+.+++++. .......+.++... ......+..+ ++|+|+||+++.+.+.. .....+++||+||+|++.
T Consensus 78 ~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 78 KQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp HHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhh
Confidence 999999999876 33556667777665 3344445444 89999999999877653 445689999999999876
Q ss_pred h-----------cchhHH-HHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeec-chhhH-HHHHhhcCCCeEEcccCc
Q 013392 183 E-----------LGFGKE-IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATL-NEKVN-HLAKISLETPVLIGLDEK 248 (444)
Q Consensus 183 ~-----------~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~-~~~~~-~~~~~~~~~~~~~~~~~~ 248 (444)
. .++... +..++..++.... ..........|++++|||+ +.... .+...... +.....
T Consensus 153 ~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~----~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~ 224 (414)
T 3oiy_A 153 KASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI----YERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRL 224 (414)
T ss_dssp HCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC----CCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCC
T ss_pred hccchhhhHHhhcCCcHHHHHHHHHhcccchh----hhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcc
Confidence 4 334444 6667766641000 0000000278999999994 44332 12221111 000000
Q ss_pred CCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecc
Q 013392 249 KLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFST 328 (444)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~ 328 (444)
......+.+.+... .+...+..+++.. +.++||||++
T Consensus 225 -----------------------------------~~~~~~i~~~~~~~---~~~~~l~~~l~~~-----~~~~lVF~~~ 261 (414)
T 3oiy_A 225 -----------------------------------VSVARNITHVRISS---RSKEKLVELLEIF-----RDGILIFAQT 261 (414)
T ss_dssp -----------------------------------CCCCCSEEEEEESS---CCHHHHHHHHHHH-----CSSEEEEESS
T ss_pred -----------------------------------ccccccchheeecc---CHHHHHHHHHHHc-----CCCEEEEECC
Confidence 01122333444333 4666777777663 4799999999
Q ss_pred cchhhhhhhhhhhcccCCCCCchHHHHHhhhccceE-EEecCCCHHHHHHHHHHhhcCCCcEEEE----ecccccCCCCC
Q 013392 329 CDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTF-RLHGNMKQEDRRTTFGAFKTEKKALLLS----TDVAARGLDFP 403 (444)
Q Consensus 329 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~iLi~----t~~~~~G~di~ 403 (444)
+..++.+++.|... ++.+. .+||. +|. ++.|++|+.+|||| |+++++|+|+|
T Consensus 262 ~~~~~~l~~~L~~~-----------------~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip 318 (414)
T 3oiy_A 262 EEEGKELYEYLKRF-----------------KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLP 318 (414)
T ss_dssp HHHHHHHHHHHHHT-----------------TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCT
T ss_pred HHHHHHHHHHHHHc-----------------CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccc
Confidence 99999999999887 77887 88884 333 99999999999999 99999999999
Q ss_pred C-CcEEEEccCC--CCcchhhhcccccccCCC----cccccceE
Q 013392 404 K-VKCIIQYDSA--GEATEYVHRYLKHLPVGN----FYFNIPLI 440 (444)
Q Consensus 404 ~-~~~vi~~~~~--~s~~~~~Q~~GR~~R~g~----~g~~~~~i 440 (444)
+ +++||+++.| .+...|+||+||+||.|. .|.++.++
T Consensus 319 ~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 319 ERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp TTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred cccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 9 9999999999 999999999999999884 67777654
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2e-43 Score=356.37 Aligned_cols=366 Identities=17% Similarity=0.202 Sum_probs=250.7
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHh-HhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCC
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 93 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~ 93 (444)
.+.++|+++++++++.+.+ +.+||..|+++|.++++. +.+++++++++|||+|||+++.++++..+.. .+
T Consensus 5 ~~~~~~~~l~l~~~~~~~l-~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~ 75 (715)
T 2va8_A 5 LEWMPIEDLKLPSNVIEII-KKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NG 75 (715)
T ss_dssp -CCCBGGGSSSCHHHHHHH-HTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SC
T ss_pred cccCcHHHcCCCHHHHHHH-HhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CC
Confidence 4568999999999999999 557998899999999999 7789999999999999999999999987764 25
Q ss_pred ceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEE
Q 013392 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (444)
Q Consensus 94 ~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lv 173 (444)
.++++++|+++|+.|+.+.++.+. ..+ .......++...... ...+++|+|+||+++...+.. ....++++++|
T Consensus 76 ~~il~i~P~r~La~q~~~~~~~~~-~~g-~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~v 149 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLTFKDWE-LIG-FKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRH-RPEWLNEVNYF 149 (715)
T ss_dssp SEEEEECSCHHHHHHHHHHHGGGG-GGT-CCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHH-CCGGGGGEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhh-cCC-CEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhC-ChhHhhccCEE
Confidence 679999999999999999996443 233 344444444333221 123679999999999998876 44446799999
Q ss_pred EEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCC
Q 013392 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (444)
Q Consensus 174 V~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (444)
|+||+|++.+..++..+..++..++ ..+++++|||+++. ..+..++. .+ .+.......+-.
T Consensus 150 IiDE~H~l~~~~~~~~l~~i~~~~~----------------~~~ii~lSATl~n~-~~~~~~l~-~~-~~~~~~r~~~l~ 210 (715)
T 2va8_A 150 VLDELHYLNDPERGPVVESVTIRAK----------------RRNLLALSATISNY-KQIAKWLG-AE-PVATNWRPVPLI 210 (715)
T ss_dssp EECSGGGGGCTTTHHHHHHHHHHHH----------------TSEEEEEESCCTTH-HHHHHHHT-CE-EEECCCCSSCEE
T ss_pred EEechhhcCCcccchHHHHHHHhcc----------------cCcEEEEcCCCCCH-HHHHHHhC-CC-ccCCCCCCCCce
Confidence 9999999887678888888887775 57999999999863 44444332 11 111111111000
Q ss_pred cccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhh
Q 013392 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (444)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~ 333 (444)
.. +.+........ .......... ... ..... ...+.+.. ..++++||||++++.++
T Consensus 211 ~~-~~~~~~~~~~~---------------~~~~~~~~~~-~~~-~~~~~----~~~~~~~~--~~~~~~LVF~~s~~~~~ 266 (715)
T 2va8_A 211 EG-VIYPERKKKEY---------------NVIFKDNTTK-KVH-GDDAI----IAYTLDSL--SKNGQVLVFRNSRKMAE 266 (715)
T ss_dssp EE-EEEECSSTTEE---------------EEEETTSCEE-EEE-SSSHH----HHHHHHHH--TTTCCEEEECSSHHHHH
T ss_pred EE-EEecCCcccce---------------eeecCcchhh-hcc-cchHH----HHHHHHHH--hcCCCEEEEECCHHHHH
Confidence 00 00000000000 0000000000 000 01222 22233222 34689999999999999
Q ss_pred hhhhhhhhcccCCCCCchH--------------------HHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEe
Q 013392 334 FHYSLLSEFQWSPHSQPDM--------------------ELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST 393 (444)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t 393 (444)
.+++.|.+..... ..... ..........+..+||+++.++|..+++.|.+|..+|||||
T Consensus 267 ~~a~~L~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT 345 (715)
T 2va8_A 267 STALKIANYMNFV-SLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVAT 345 (715)
T ss_dssp HHHHHHHHTTTSS-CCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEEC
T ss_pred HHHHHHHHHHhhc-cCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 9999998753210 00000 00111123568999999999999999999999999999999
Q ss_pred cccccCCCCCCCcEEEE----cc-------CCCCcchhhhcccccccCCC--cccccce
Q 013392 394 DVAARGLDFPKVKCIIQ----YD-------SAGEATEYVHRYLKHLPVGN--FYFNIPL 439 (444)
Q Consensus 394 ~~~~~G~di~~~~~vi~----~~-------~~~s~~~~~Q~~GR~~R~g~--~g~~~~~ 439 (444)
+++++|+|+|++++||+ |+ .|.|..+|.||+||+||.|. .|.|+.+
T Consensus 346 ~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 404 (715)
T 2va8_A 346 PTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVV 404 (715)
T ss_dssp GGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEE
T ss_pred hHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 99999999999999999 88 78999999999999999985 4555544
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1e-43 Score=358.31 Aligned_cols=356 Identities=19% Similarity=0.189 Sum_probs=254.2
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHh-HhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
++|+++++++++.+.+ +.+||..|+++|.++++. +.+++++++++|||+|||+++.++++..+.. .+.++
T Consensus 1 ~~f~~l~l~~~~~~~l-~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~~ 71 (720)
T 2zj8_A 1 MRVDELRVDERIKSTL-KERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--------QGGKA 71 (720)
T ss_dssp CBGGGCCSCHHHHHHH-HHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH--------HCSEE
T ss_pred CcHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCCEE
Confidence 5799999999999999 557998999999999998 7899999999999999999999999887764 14679
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
++++|+++|+.|+.++++++.. .+ ......+++...... ...+++|+|+||+++...+.. ....++++++||+|
T Consensus 72 l~i~P~raLa~q~~~~~~~l~~-~g-~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 72 VYIVPLKALAEEKFQEFQDWEK-IG-LRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKILVAD 145 (720)
T ss_dssp EEECSSGGGHHHHHHHTGGGGG-GT-CCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHHh-cC-CEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEEEE
Confidence 9999999999999999965433 33 344555554333221 234679999999999988776 34446789999999
Q ss_pred chhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCccc
Q 013392 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (444)
Q Consensus 177 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (444)
|+|.+.+..++..+..++..++. ..+++++|||+++. ..+..++.. + .+.......+-.. .
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~---------------~~~ii~lSATl~n~-~~~~~~l~~-~-~~~~~~rp~~l~~-~ 206 (720)
T 2zj8_A 146 EIHLIGSRDRGATLEVILAHMLG---------------KAQIIGLSATIGNP-EELAEWLNA-E-LIVSDWRPVKLRR-G 206 (720)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHBT---------------TBEEEEEECCCSCH-HHHHHHTTE-E-EEECCCCSSEEEE-E
T ss_pred CCcccCCCcccHHHHHHHHHhhc---------------CCeEEEEcCCcCCH-HHHHHHhCC-c-ccCCCCCCCcceE-E
Confidence 99998887788899999888874 68999999999863 444443321 1 1111100000000 0
Q ss_pred ccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhh
Q 013392 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (444)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~ 336 (444)
..+. . . ........ .....+...+...+ ..++++||||++++.++.++
T Consensus 207 ~~~~----~---~--------------~~~~~~~~-----~~~~~~~~~~~~~~------~~~~~~LVF~~sr~~~~~~a 254 (720)
T 2zj8_A 207 VFYQ----G---F--------------VTWEDGSI-----DRFSSWEELVYDAI------RKKKGALIFVNMRRKAERVA 254 (720)
T ss_dssp EEET----T---E--------------EEETTSCE-----EECSSTTHHHHHHH------HTTCCEEEECSCHHHHHHHH
T ss_pred EEeC----C---e--------------eeccccch-----hhhhHHHHHHHHHH------hCCCCEEEEecCHHHHHHHH
Confidence 0000 0 0 00000000 00123334444333 23589999999999999999
Q ss_pred hhhhhcccCCCC----------------CchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCC
Q 013392 337 SLLSEFQWSPHS----------------QPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGL 400 (444)
Q Consensus 337 ~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~ 400 (444)
..|.+....... ..............+..+||+++.++|..+++.|++|..+|||||+++++|+
T Consensus 255 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gv 334 (720)
T 2zj8_A 255 LELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGI 334 (720)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGC
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccC
Confidence 998764211000 0000001112234689999999999999999999999999999999999999
Q ss_pred CCCCCcEEEE----cc----CCCCcchhhhcccccccCCC--cccccce
Q 013392 401 DFPKVKCIIQ----YD----SAGEATEYVHRYLKHLPVGN--FYFNIPL 439 (444)
Q Consensus 401 di~~~~~vi~----~~----~~~s~~~~~Q~~GR~~R~g~--~g~~~~~ 439 (444)
|+|++++||+ |+ .|.+..+|.||+||+||.|. .|.|+.+
T Consensus 335 dip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 383 (720)
T 2zj8_A 335 NTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIV 383 (720)
T ss_dssp CCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEE
T ss_pred CCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEE
Confidence 9999999998 55 58899999999999999985 4555443
No 21
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-44 Score=369.54 Aligned_cols=386 Identities=18% Similarity=0.162 Sum_probs=254.7
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
...|..+++++.+...+...++|. |+++|.++++.+..++++++++|||+|||+++.++++..+.. +.++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~-ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---------g~rv 230 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRV 230 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSC-CCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---------TCEE
T ss_pred CCCcccCCCChhhhHHHHHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---------CCeE
Confidence 346777888888877776666665 999999999999999999999999999999999999988744 6679
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
+|++|+++|+.|+++.+.+++.. .+.+.++.. ...+++|+|+||++|.+.+.. ....+.++++||+|
T Consensus 231 lvl~PtraLa~Q~~~~l~~~~~~-----VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lVVID 297 (1108)
T 3l9o_A 231 IYTSPIKALSNQKYRELLAEFGD-----VGLMTGDIT-------INPDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFD 297 (1108)
T ss_dssp EEEESSHHHHHHHHHHHHHHTSS-----EEEECSSCB-------CCCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEEEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhCC-----ccEEeCccc-------cCCCCCEEEeChHHHHHHHHc-CccccccCCEEEEh
Confidence 99999999999999999998762 334555443 234579999999999998876 44446789999999
Q ss_pred chhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhH--HHHHhhcCCCeEEccc-CcCCCCC
Q 013392 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVN--HLAKISLETPVLIGLD-EKKLPED 253 (444)
Q Consensus 177 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~ 253 (444)
|+|++.+.+++..+..++..++. ..|++++|||+++... .+.......+..+... ....+-.
T Consensus 298 EaH~l~d~~rg~~~e~ii~~l~~---------------~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~ 362 (1108)
T 3l9o_A 298 EVHYMRDKERGVVWEETIILLPD---------------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQ 362 (1108)
T ss_dssp TGGGTTSHHHHHHHHHHHHHSCT---------------TSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEE
T ss_pred hhhhccccchHHHHHHHHHhcCC---------------CceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccce
Confidence 99999988888899999888876 8899999999887543 3444444444443222 1111111
Q ss_pred cccccccCcc-cccccc------------ccCCCccccccCccccccccceeeEEE-cCCCCcHHHHHHHHHhhcccccC
Q 013392 254 KSHVRFGSLE-SDVKEE------------VEHPSTTMRSTTEDFKLPAQLVQRYVK-VPCGSRLAVLLSILKHLFDTEVS 319 (444)
Q Consensus 254 ~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~l~~~l~~~~~~~~~ 319 (444)
.......... ....+. ........................+.. .........+..++..+. ....
T Consensus 363 ~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~-~~~~ 441 (1108)
T 3l9o_A 363 HYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIW-KKKY 441 (1108)
T ss_dssp EEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHH-HTTC
T ss_pred EEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHH-hcCC
Confidence 1000000000 000000 000000000000000000000000000 000001233333443332 2345
Q ss_pred ceEEEEecccchhhhhhhhhhhcccCCCCCc----------------------hHHHHHhhhccceEEEecCCCHHHHHH
Q 013392 320 QKLVVFFSTCDAVDFHYSLLSEFQWSPHSQP----------------------DMELKQLFLRCKTFRLHGNMKQEDRRT 377 (444)
Q Consensus 320 ~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~r~~ 377 (444)
.++||||+++..++.++..|........... ............++.+||++++.+|..
T Consensus 442 ~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~ 521 (1108)
T 3l9o_A 442 NPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEV 521 (1108)
T ss_dssp CCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHH
T ss_pred CCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHH
Confidence 7999999999999999999876433211100 000000122345899999999999999
Q ss_pred HHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCC--------CcchhhhcccccccCCCcccccceEE
Q 013392 378 TFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG--------EATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 378 ~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~--------s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+++.|++|..+|||||+++++|+|+|++++||+++.+. |...|+||+||+||.|..+.+++++.
T Consensus 522 v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill 593 (1108)
T 3l9o_A 522 IEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMM 593 (1108)
T ss_dssp HHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEE
T ss_pred HHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEE
Confidence 99999999999999999999999999999999876544 55679999999999997666666654
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=9.8e-44 Score=350.47 Aligned_cols=376 Identities=16% Similarity=0.169 Sum_probs=200.7
Q ss_pred CCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcc
Q 013392 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHR 119 (444)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~ 119 (444)
..|+++|.++++.+++++++++.+|||+|||+++++++++.+..... ..+.++||++|+++|+.||.+++.+++..
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc----cCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 35999999999999999999999999999999999999988866321 23677999999999999999999999876
Q ss_pred cCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHH-HHHH-Hh
Q 013392 120 FHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE-EILD-IL 197 (444)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~-~~~~-~l 197 (444)
.+ .....+.++.........+..+++|+|+||+++.+.+.......+..+++||+||||++.+.+....+. .++. .+
T Consensus 82 ~~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 160 (556)
T 4a2p_A 82 QG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 160 (556)
T ss_dssp GT-CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHH
T ss_pred cC-ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhh
Confidence 54 445556666655555555556789999999999998887333367899999999999988765443332 2222 22
Q ss_pred cCCCCCCCCCCCcccccceeEEEEEeecchhh--------H---HHHHhhcCCCeEEcccCc------CCCCCc-ccccc
Q 013392 198 GSRNIGSIGEGNEVSNVKRQNLLLSATLNEKV--------N---HLAKISLETPVLIGLDEK------KLPEDK-SHVRF 259 (444)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~--------~---~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~ 259 (444)
... ....+++++|||++... . .+.... ........... ...... ....+
T Consensus 161 ~~~------------~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (556)
T 4a2p_A 161 NSA------------SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DIQAISTVRENIQELQRFMNKPEIDVRLV 227 (556)
T ss_dssp CC---------------CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHH-TCSEEECCCTTHHHHHHHTCCCCEEEEEC
T ss_pred ccc------------CCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhc-CCeEecchhcchHHHHhcCCCCceEEEEc
Confidence 110 11679999999995321 1 111111 11111100000 000000 00000
Q ss_pred cC-cccc--------------ccccccCCCccccccCcccc---------------------------------------
Q 013392 260 GS-LESD--------------VKEEVEHPSTTMRSTTEDFK--------------------------------------- 285 (444)
Q Consensus 260 ~~-~~~~--------------~~~~~~~~~~~~~~~~~~~~--------------------------------------- 285 (444)
.. .... ..+.................
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (556)
T 4a2p_A 228 KRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEH 307 (556)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHH
T ss_pred CCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 00 0000 00000000000000000000
Q ss_pred ------------------cccccee------------------------------e-EEEcCCCCcHHHHHHHHHhhccc
Q 013392 286 ------------------LPAQLVQ------------------------------R-YVKVPCGSRLAVLLSILKHLFDT 316 (444)
Q Consensus 286 ------------------~~~~~~~------------------------------~-~~~~~~~~k~~~l~~~l~~~~~~ 316 (444)
....+.. . ........|...+..++.+.+..
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~ 387 (556)
T 4a2p_A 308 LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY 387 (556)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcC
Confidence 0000000 0 00001356888888888776545
Q ss_pred ccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhc-CCCcEEEEecc
Q 013392 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT-EKKALLLSTDV 395 (444)
Q Consensus 317 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~iLi~t~~ 395 (444)
..+.++||||++++.++.+.+.|.+....... ....+.|.....+||+++..+|.++++.|++ |+.+|||||++
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~ 462 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYI-----KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV 462 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSC-----CEEC------------------------------CCEEEEEC-
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCccee-----eeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCc
Confidence 66789999999999999999999764110000 0000124555667888999999999999999 99999999999
Q ss_pred cccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceE
Q 013392 396 AARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 396 ~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
+++|+|+|++++||+|++|+|+..|+||+|| ||. ++|.++.++
T Consensus 463 ~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~ 505 (556)
T 4a2p_A 463 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVT 505 (556)
T ss_dssp ----------CEEEEETCCSCHHHHHHC----------CCEEEEE
T ss_pred hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEE
Confidence 9999999999999999999999999999999 998 888888875
No 23
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=5.3e-43 Score=345.28 Aligned_cols=380 Identities=16% Similarity=0.186 Sum_probs=228.2
Q ss_pred CCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 39 FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 39 ~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
|. |+++|.++++.++.++++++.+|||+|||+++++++++.+..... ..+.++||++|+++|+.||.+++.+++.
T Consensus 3 ~~-~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~ 77 (555)
T 3tbk_A 3 LK-PRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC----GQKGKVVFFANQIPVYEQQATVFSRYFE 77 (555)
T ss_dssp CC-CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----CCCCEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 54 999999999999999999999999999999999999988876321 2366799999999999999999999987
Q ss_pred ccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHH-HHHHHHHh
Q 013392 119 RFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE-IEEILDIL 197 (444)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~-~~~~~~~l 197 (444)
..+ .....+.++.........+..+++|+|+||+++...+.......+..+++||+||||++.+.+.... +..++...
T Consensus 78 ~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 156 (555)
T 3tbk_A 78 RLG-YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHK 156 (555)
T ss_dssp TTT-CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHH
T ss_pred cCC-cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhh
Confidence 654 4556677776665555556667899999999999988874433677899999999999877643322 22333332
Q ss_pred cCCCCCCCCCCCcccccceeEEEEEeecchhh--------HHHHHh--hcCCCeEEcccCc------CCCCCc-cccccc
Q 013392 198 GSRNIGSIGEGNEVSNVKRQNLLLSATLNEKV--------NHLAKI--SLETPVLIGLDEK------KLPEDK-SHVRFG 260 (444)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~--------~~~~~~--~~~~~~~~~~~~~------~~~~~~-~~~~~~ 260 (444)
.... .....+++++|||+.... ..+... .+........... ...... ....+.
T Consensus 157 ~~~~----------~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 226 (555)
T 3tbk_A 157 LGES----------RDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVA 226 (555)
T ss_dssp TSSC----------CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECC
T ss_pred hccc----------cCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEec
Confidence 1110 011679999999995421 111111 1111111111100 000000 000000
Q ss_pred C-ccccccc-----------cccCCCc----cccccCcccc---------------------------------------
Q 013392 261 S-LESDVKE-----------EVEHPST----TMRSTTEDFK--------------------------------------- 285 (444)
Q Consensus 261 ~-~~~~~~~-----------~~~~~~~----~~~~~~~~~~--------------------------------------- 285 (444)
. ....... ....... ..........
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (555)
T 3tbk_A 227 SRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSH 306 (555)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHH
Confidence 0 0000000 0000000 0000000000
Q ss_pred ------------------------------------------------ccccceee-EEEcCCCCcHHHHHHHHHhhccc
Q 013392 286 ------------------------------------------------LPAQLVQR-YVKVPCGSRLAVLLSILKHLFDT 316 (444)
Q Consensus 286 ------------------------------------------------~~~~~~~~-~~~~~~~~k~~~l~~~l~~~~~~ 316 (444)
.+..+... ........|...+..+|...+..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 386 (555)
T 3tbk_A 307 LRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHL 386 (555)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhcc
Confidence 00000000 00011356888888888877655
Q ss_pred ccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhc-CCCcEEEEecc
Q 013392 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT-EKKALLLSTDV 395 (444)
Q Consensus 317 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~iLi~t~~ 395 (444)
..+.++||||++++.++.+.+.|........-. ...+.|.....+||+++..+|.++++.|++ |+.+|||||++
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~ 461 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLK-----PGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSV 461 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCC-----EEECCC--------------------------CCSEEEECCC
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCcee-----eeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcch
Confidence 667899999999999999999998752100000 000113455566789999999999999999 99999999999
Q ss_pred cccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 396 AARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 396 ~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+++|+|+|++++||+|++|+|+..|+||+|| ||. +.|.++.++.
T Consensus 462 ~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~ 505 (555)
T 3tbk_A 462 ADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTS 505 (555)
T ss_dssp TTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEES
T ss_pred hhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEc
Confidence 9999999999999999999999999999999 898 8888888763
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.1e-43 Score=356.41 Aligned_cols=378 Identities=18% Similarity=0.169 Sum_probs=214.4
Q ss_pred HHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHH
Q 013392 31 DQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (444)
Q Consensus 31 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 110 (444)
..+ ..+|+..|++||.++++.++.++++++++|||+|||++++++++..+..... +.+.++||++|+++|+.||.
T Consensus 4 ~~l-~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 4 SDT-NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ----GQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT----TCCCCEEEECSSHHHHHHHH
T ss_pred Ccc-cccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc----CCCCeEEEEECCHHHHHHHH
Confidence 445 6679999999999999999999999999999999999999999988765321 22367999999999999999
Q ss_pred HHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHH
Q 013392 111 EILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI 190 (444)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~ 190 (444)
+++.+++...+ .....+.++.........+..+++|+|+||++|.+.+.......+..+++||+||||++.+......+
T Consensus 79 ~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i 157 (696)
T 2ykg_A 79 SVFSKYFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMI 157 (696)
T ss_dssp HHHHHHTTTTT-CCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred HHHHHHhccCC-ceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHH
Confidence 99999986443 44566666665544455555678999999999999888633335778999999999998765433222
Q ss_pred -HHHHHH-hcCCCCCCCCCCCcccccceeEEEEEeecch--------hhHHHHHhh---------------------cCC
Q 013392 191 -EEILDI-LGSRNIGSIGEGNEVSNVKRQNLLLSATLNE--------KVNHLAKIS---------------------LET 239 (444)
Q Consensus 191 -~~~~~~-l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~--------~~~~~~~~~---------------------~~~ 239 (444)
..++.. +... .....+++++|||+.. ....+.... ...
T Consensus 158 ~~~~l~~~~~~~-----------~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 226 (696)
T 2ykg_A 158 MFNYLDQKLGGS-----------SGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYK 226 (696)
T ss_dssp HHHHHHHHHTTC-----------CSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCC
T ss_pred HHHHHHHhhccc-----------CCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCC
Confidence 223322 2110 0116799999999962 122222211 011
Q ss_pred CeEEcccCcCCCCCccccccc----CccccccccccCCCcc----------------------------ccccCc-----
Q 013392 240 PVLIGLDEKKLPEDKSHVRFG----SLESDVKEEVEHPSTT----------------------------MRSTTE----- 282 (444)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----------------------------~~~~~~----- 282 (444)
|..................+. ....-.......+... ......
T Consensus 227 p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (696)
T 2ykg_A 227 PQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC 306 (696)
T ss_dssp CEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHH
T ss_pred CceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHH
Confidence 111100000000000000000 0000000000000000 000000
Q ss_pred ---------------------------------------cccccccceeeEEE----------------cCCCCcHHHHH
Q 013392 283 ---------------------------------------DFKLPAQLVQRYVK----------------VPCGSRLAVLL 307 (444)
Q Consensus 283 ---------------------------------------~~~~~~~~~~~~~~----------------~~~~~k~~~l~ 307 (444)
.......+.+.+.. .....|...+.
T Consensus 307 ~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~ 386 (696)
T 2ykg_A 307 KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC 386 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 00000011111100 02456888888
Q ss_pred HHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEE--------ecCCCHHHHHHHH
Q 013392 308 SILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL--------HGNMKQEDRRTTF 379 (444)
Q Consensus 308 ~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~r~~~~ 379 (444)
.++...+....+.++||||+++..++.+++.|...... .++++..+ |++++..+|.+++
T Consensus 387 ~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~-------------~~~~~~~l~G~~~~~~h~~~~~~eR~~v~ 453 (696)
T 2ykg_A 387 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL-------------SFLKPGILTGRGKTNQNTGMTLPAQKCIL 453 (696)
T ss_dssp HHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTC-------------CSCCEEC----------------------
T ss_pred HHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCc-------------cccceeEEEccCCCccccCCCHHHHHHHH
Confidence 88887655556789999999999999999999886210 01556666 5699999999999
Q ss_pred HHhhc-CCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceE
Q 013392 380 GAFKT-EKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 380 ~~f~~-g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
+.|++ |+.+|||||+++++|+|+|++++||+|++|.|...|+||+|| ||. +.|.++.++
T Consensus 454 ~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~ 513 (696)
T 2ykg_A 454 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLT 513 (696)
T ss_dssp -------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEE
T ss_pred HHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEe
Confidence 99998 999999999999999999999999999999999999999999 997 778776654
No 25
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.4e-43 Score=356.25 Aligned_cols=360 Identities=19% Similarity=0.170 Sum_probs=248.7
Q ss_pred CCccccC--CCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCce
Q 013392 18 CSFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (444)
Q Consensus 18 ~~~~~~~--l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (444)
++|++++ +++++.+.+ +.+||..|+++|.++++.+.+++++++++|||+|||+++.++++..+.. +.+
T Consensus 1 m~f~~l~~~l~~~~~~~l-~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~ 70 (702)
T 2p6r_A 1 MKVEELAESISSYAVGIL-KEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGK 70 (702)
T ss_dssp CCSHHHHHHHHHHHHHHH-HCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCC
T ss_pred CchhhhhhccCHHHHHHH-HhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCc
Confidence 5789999 999999999 5679988999999999999999999999999999999999999887654 457
Q ss_pred EEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEE
Q 013392 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (444)
Q Consensus 96 vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~ 175 (444)
+++++|+++|+.|+.+.++.+.. .+ .......++...... ...+++|+|+||+++...+.+ ....++++++||+
T Consensus 71 ~l~i~P~r~La~q~~~~~~~~~~-~g-~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~vIi 144 (702)
T 2p6r_A 71 SLYVVPLRALAGEKYESFKKWEK-IG-LRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLVV 144 (702)
T ss_dssp EEEEESSHHHHHHHHHHHTTTTT-TT-CCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHT-TCSGGGGCCEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHh-cC-CEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHc-ChhHHhhcCEEEE
Confidence 99999999999999999964432 23 344555554433221 224689999999999998876 3444678999999
Q ss_pred echhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcc
Q 013392 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (444)
Q Consensus 176 DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
||+|++.+.+++..+..++..+.... ...+++++|||+++ ...+..+.. .+ .+.......+-...
T Consensus 145 DE~H~l~~~~r~~~~~~ll~~l~~~~------------~~~~ii~lSATl~n-~~~~~~~l~-~~-~~~~~~r~~~l~~~ 209 (702)
T 2p6r_A 145 DEIHLLDSEKRGATLEILVTKMRRMN------------KALRVIGLSATAPN-VTEIAEWLD-AD-YYVSDWRPVPLVEG 209 (702)
T ss_dssp TTGGGGGCTTTHHHHHHHHHHHHHHC------------TTCEEEEEECCCTT-HHHHHHHTT-CE-EEECCCCSSCEEEE
T ss_pred eeeeecCCCCcccHHHHHHHHHHhcC------------cCceEEEECCCcCC-HHHHHHHhC-CC-cccCCCCCccceEE
Confidence 99999888777777777766664211 17899999999986 344444332 21 11111111000000
Q ss_pred cccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhh
Q 013392 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (444)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l 335 (444)
..+.. . ............. -.....+...+ ..++++||||++++.++.+
T Consensus 210 -~~~~~----~-----------------~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~LVF~~s~~~~~~~ 258 (702)
T 2p6r_A 210 -VLCEG----T-----------------LELFDGAFSTSRR---VKFEELVEECV------AENGGVLVFESTRRGAEKT 258 (702)
T ss_dssp -EECSS----E-----------------EEEEETTEEEEEE---CCHHHHHHHHH------HTTCCEEEECSSHHHHHHH
T ss_pred -EeeCC----e-----------------eeccCcchhhhhh---hhHHHHHHHHH------hcCCCEEEEcCCHHHHHHH
Confidence 00000 0 0000000000000 00223333322 3468999999999999999
Q ss_pred hhhhhhcccCC---C----------CCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCC
Q 013392 336 YSLLSEFQWSP---H----------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDF 402 (444)
Q Consensus 336 ~~~l~~~~~~~---~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di 402 (444)
++.|.+..... . ............+..+..+||+++.++|..+++.|++|..+|||||+++++|+|+
T Consensus 259 a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidi 338 (702)
T 2p6r_A 259 AVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNL 338 (702)
T ss_dssp HHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCC
T ss_pred HHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCC
Confidence 99887642110 0 0000011111224578899999999999999999999999999999999999999
Q ss_pred CCCcEEEE----cc---CCCCcchhhhcccccccCCC--cccccce
Q 013392 403 PKVKCIIQ----YD---SAGEATEYVHRYLKHLPVGN--FYFNIPL 439 (444)
Q Consensus 403 ~~~~~vi~----~~---~~~s~~~~~Q~~GR~~R~g~--~g~~~~~ 439 (444)
|++++||+ |+ .|.|..+|.||+||+||.|. .|.|+.+
T Consensus 339 p~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 384 (702)
T 2p6r_A 339 PARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIII 384 (702)
T ss_dssp CBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred CceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 99999998 55 78899999999999999985 4555444
No 26
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3.8e-43 Score=357.40 Aligned_cols=383 Identities=15% Similarity=0.157 Sum_probs=210.0
Q ss_pred HcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
.+|+..|++||.++++.++.++++++++|||+|||++++++++..+..... ..+.++|||+|+++|+.||.+.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999999999988876321 2366799999999999999999999
Q ss_pred HhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHH-HHH
Q 013392 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE-EIL 194 (444)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~-~~~ 194 (444)
++...+ .....++++.........+..+++|+|+||++|.+.+.......+..+++||+||||++...+....+. .+.
T Consensus 319 ~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~ 397 (797)
T 4a2q_A 319 HFERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (797)
T ss_dssp HHGGGT-CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHH
T ss_pred hcccCC-ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHH
Confidence 987654 455667777665555666667889999999999998886333367889999999999987764433332 222
Q ss_pred HHhcCCCCCCCCCCCcccccceeEEEEEeecchhh--------HHHHHh--hcCCCeEEcccCc------CCCCCc-ccc
Q 013392 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKV--------NHLAKI--SLETPVLIGLDEK------KLPEDK-SHV 257 (444)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~--------~~~~~~--~~~~~~~~~~~~~------~~~~~~-~~~ 257 (444)
...... .....+++++|||+.... ..+... .+........... ...... ...
T Consensus 398 ~~~~~~-----------~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~ 466 (797)
T 4a2q_A 398 EQKFNS-----------ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVR 466 (797)
T ss_dssp HHHHTT-----------CCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEE
T ss_pred HHhhcc-----------CCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEE
Confidence 221110 011679999999995311 111111 1111111111100 000000 000
Q ss_pred cccC-cccc--------------cccc---------ccCCCc-------cccccC---cccccc----------------
Q 013392 258 RFGS-LESD--------------VKEE---------VEHPST-------TMRSTT---EDFKLP---------------- 287 (444)
Q Consensus 258 ~~~~-~~~~--------------~~~~---------~~~~~~-------~~~~~~---~~~~~~---------------- 287 (444)
.... .... ..+. ...... +..... .....+
T Consensus 467 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 467 LVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 546 (797)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 0000 0000 0000 000000 000000 000000
Q ss_pred ----------------------cccee-------------------------------eEEEcCCCCcHHHHHHHHHhhc
Q 013392 288 ----------------------AQLVQ-------------------------------RYVKVPCGSRLAVLLSILKHLF 314 (444)
Q Consensus 288 ----------------------~~~~~-------------------------------~~~~~~~~~k~~~l~~~l~~~~ 314 (444)
..+.. .........|...+..+|...+
T Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (797)
T 4a2q_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (797)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHh
Confidence 00000 0000013568888888888765
Q ss_pred ccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhc-CCCcEEEEe
Q 013392 315 DTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT-EKKALLLST 393 (444)
Q Consensus 315 ~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~iLi~t 393 (444)
....+.++||||+++..++.+.+.|.+........ ...+.|.....+||+++..+|.++++.|++ |+.+|||||
T Consensus 627 ~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~-----~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT 701 (797)
T 4a2q_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIK-----PGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIAT 701 (797)
T ss_dssp HHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCC-----CEEC----------------------------CCSEEEEE
T ss_pred ccCCCCeEEEEECcHHHHHHHHHHHHhCccccccc-----ceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEc
Confidence 55667899999999999999999997642100000 000125566678899999999999999999 999999999
Q ss_pred cccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 394 DVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 394 ~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+++++|+|+|++++||+|++|+|+..|+||+|| ||. +.|.++.++.
T Consensus 702 ~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~ 747 (797)
T 4a2q_A 702 SVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTS 747 (797)
T ss_dssp CC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEEC
T ss_pred CchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEe
Confidence 999999999999999999999999999999999 998 8899888763
No 27
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.1e-42 Score=336.00 Aligned_cols=354 Identities=18% Similarity=0.158 Sum_probs=243.4
Q ss_pred CCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhccc
Q 013392 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~ 120 (444)
.|++||.++++.++.+ ++++.+|||+|||++++.++...+.. .+.++||++|+++|+.||.+++.++++.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~- 78 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNL- 78 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCS-
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCc-
Confidence 3999999999999988 99999999999999999998887652 3456999999999999999999998742
Q ss_pred CceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCC
Q 013392 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (444)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~ 200 (444)
.......+.++.... .......+++|+|+||+.+...+.. ..+.+..+++||+||||++.+......+...+.....
T Consensus 79 ~~~~v~~~~g~~~~~-~~~~~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~- 155 (494)
T 1wp9_A 79 PPEKIVALTGEKSPE-ERSKAWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAK- 155 (494)
T ss_dssp CGGGEEEECSCSCHH-HHHHHHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCS-
T ss_pred chhheEEeeCCcchh-hhhhhccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCC-
Confidence 122445555554443 3334445679999999999998776 4556678999999999998766444445444444443
Q ss_pred CCCCCCCCCcccccceeEEEEEeecchhhHHHHH---hhcCCCeEEcccCcCCCCCccccccc-------Cccccccc--
Q 013392 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK---ISLETPVLIGLDEKKLPEDKSHVRFG-------SLESDVKE-- 268 (444)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-- 268 (444)
..+++++|||+......+.. ............... .......-. ........
T Consensus 156 --------------~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (494)
T 1wp9_A 156 --------------NPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSP--DVRPYVKGIRFEWVRVDLPEIYKEVR 219 (494)
T ss_dssp --------------SCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTST--TTGGGCCCCCEEEEEECCCHHHHHHH
T ss_pred --------------CCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcH--HHHHhcCCCceeEEecCCcHHHHHHH
Confidence 77899999999854333322 222122111111110 000000000 00000000
Q ss_pred -----------------cccCCCcc-cc---------------cc--Ccccc---------------------cccccee
Q 013392 269 -----------------EVEHPSTT-MR---------------ST--TEDFK---------------------LPAQLVQ 292 (444)
Q Consensus 269 -----------------~~~~~~~~-~~---------------~~--~~~~~---------------------~~~~~~~ 292 (444)
....+... .. .. ...+. ....+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (494)
T 1wp9_A 220 KLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRA 299 (494)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Confidence 00000000 00 00 00000 0000000
Q ss_pred e-----------------------------------EEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhh
Q 013392 293 R-----------------------------------YVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (444)
Q Consensus 293 ~-----------------------------------~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~ 337 (444)
+ ........|...+.+++........+.++||||+++..++.+.+
T Consensus 300 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~ 379 (494)
T 1wp9_A 300 YIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVN 379 (494)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHH
T ss_pred HHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHH
Confidence 0 00014556888888888876544567899999999999999999
Q ss_pred hhhhcccCCCCCchHHHHHhhhccceEEEec--------CCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEE
Q 013392 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHG--------NMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCII 409 (444)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi 409 (444)
.|.+. ++.+..+|| +++..+|.++++.|++|+.+|||||+++++|+|+|++++||
T Consensus 380 ~L~~~-----------------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi 442 (494)
T 1wp9_A 380 ELVKD-----------------GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV 442 (494)
T ss_dssp HHHHT-----------------TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEE
T ss_pred HHHHc-----------------CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEE
Confidence 99987 788999999 99999999999999999999999999999999999999999
Q ss_pred EccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 410 QYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 410 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
++++|+|+..|.||+||+||.|+ |.++.++.
T Consensus 443 ~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~ 473 (494)
T 1wp9_A 443 FYEPVPSAIRSIQRRGRTGRHMP-GRVIILMA 473 (494)
T ss_dssp ESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEE
T ss_pred EeCCCCCHHHHHHHHhhccCCCC-ceEEEEEe
Confidence 99999999999999999999998 88887764
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-41 Score=347.76 Aligned_cols=364 Identities=20% Similarity=0.180 Sum_probs=243.2
Q ss_pred HHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHH
Q 013392 34 RERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (444)
Q Consensus 34 ~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l 113 (444)
...++|. |+++|.++++.+.+++++++++|||+|||+++.++++..+.. +.++||++|+++|+.|+.+.+
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---------g~rvL~l~PtkaLa~Q~~~~l 149 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYTSPIKALSNQKYREL 149 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---------TCEEEEEESSHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---------CCeEEEECChHHHHHHHHHHH
Confidence 3667897 999999999999999999999999999999999888877643 567999999999999999999
Q ss_pred HHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHH
Q 013392 114 HKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193 (444)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~ 193 (444)
.+++. ....++++.... .+++|+|+||++|.+.+.+ ....+.++++||+||+|++.+.+++..+..+
T Consensus 150 ~~~~~-----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 150 LAEFG-----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp HHHHS-----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred HHHhC-----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 99875 234455544332 3568999999999988876 4455679999999999999888888888888
Q ss_pred HHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHH--HHHhhcCCCeEEcccCcCCCCCcccccccCcccccccccc
Q 013392 194 LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH--LAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVE 271 (444)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (444)
+..++. ..+++++|||+++.... +.....+.+..+..... .+.......+............
T Consensus 217 l~~l~~---------------~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~-rp~pl~~~~~~~~~~~~~~~~~ 280 (1010)
T 2xgj_A 217 IILLPD---------------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF-RPTPLQHYLFPAHGDGIYLVVD 280 (1010)
T ss_dssp HHHSCT---------------TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC-CSSCEEEEEEETTSSCCEEEEC
T ss_pred HHhcCC---------------CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC-CcccceEEEEecCCcceeeeec
Confidence 888765 88999999999875432 22222233433322211 1111100000000000000000
Q ss_pred CCCcc--------ccccCc-cccc-----cccceeeEEEc---C--CCCcHHHHHHHHHhhcccccCceEEEEecccchh
Q 013392 272 HPSTT--------MRSTTE-DFKL-----PAQLVQRYVKV---P--CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (444)
Q Consensus 272 ~~~~~--------~~~~~~-~~~~-----~~~~~~~~~~~---~--~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~ 332 (444)
..... ...... .... +..-....... . ....+..+...+.. ....++||||+++..+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~----~~~~~~IVF~~sr~~~ 356 (1010)
T 2xgj_A 281 EKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK----KKYNPVIVFSFSKRDC 356 (1010)
T ss_dssp TTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHH----HTCCSEEEEESSHHHH
T ss_pred cccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh----cCCCCEEEEECCHHHH
Confidence 00000 000000 0000 00000000000 0 01222333333332 3346999999999999
Q ss_pred hhhhhhhhhcccCCCC---------------Cc-------hHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEE
Q 013392 333 DFHYSLLSEFQWSPHS---------------QP-------DMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALL 390 (444)
Q Consensus 333 ~~l~~~l~~~~~~~~~---------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iL 390 (444)
+.+++.|......... .. ............++.+||+++..+|..+++.|++|.++||
T Consensus 357 e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVL 436 (1010)
T 2xgj_A 357 EELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVL 436 (1010)
T ss_dssp HHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEE
Confidence 9999999764322110 00 0000011224568999999999999999999999999999
Q ss_pred EEecccccCCCCCCCcEEEE----ccC----CCCcchhhhcccccccCCCc--ccccceE
Q 013392 391 LSTDVAARGLDFPKVKCIIQ----YDS----AGEATEYVHRYLKHLPVGNF--YFNIPLI 440 (444)
Q Consensus 391 i~t~~~~~G~di~~~~~vi~----~~~----~~s~~~~~Q~~GR~~R~g~~--g~~~~~i 440 (444)
|||+++++|+|+|++++||+ |+. |.+...|.||+||+||.|+. |.++.+.
T Consensus 437 VAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~ 496 (1010)
T 2xgj_A 437 FATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMI 496 (1010)
T ss_dssp EEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEE
T ss_pred EEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEE
Confidence 99999999999999999999 888 88999999999999999975 6666554
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.7e-42 Score=354.18 Aligned_cols=300 Identities=18% Similarity=0.237 Sum_probs=221.2
Q ss_pred HHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHH
Q 013392 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~ 106 (444)
+.+.+.+...+||. |+++|.++++.++.++++++++|||+|||++++.+++..+. .+.++||++|+++|+
T Consensus 65 ~~~~~~~~~~~gf~-pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---------~~~~~Lil~PtreLa 134 (1104)
T 4ddu_A 65 EDFRSFFKKKFGKD-LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLV 134 (1104)
T ss_dssp HHHHHHHHHHSSSC-CCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---------TTCCEEEEESSHHHH
T ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---------cCCeEEEEechHHHH
Confidence 34455666778996 99999999999999999999999999999988887777662 366799999999999
Q ss_pred HHHHHHHHHHhcccCceeeEEEeCCcch---hHHHHHhcCC-CcEEEeCchHHHHHHhccCccccCCccEEEEechhHhh
Q 013392 107 LQVYEILHKLLHRFHWIVPGYVMGGENR---SKEKARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 107 ~q~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~ 182 (444)
.|+.+.++++. .. ......+.++... ......+..+ ++|+|+||++|.+.+.. +.+.++++||+||+|++.
T Consensus 135 ~Q~~~~l~~l~-~~-~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~ 209 (1104)
T 4ddu_A 135 KQTLERLQKLA-DE-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVL 209 (1104)
T ss_dssp HHHHHHHHTTS-CT-TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHT
T ss_pred HHHHHHHHHhh-CC-CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccc
Confidence 99999999965 22 3566777777766 4555566655 99999999999887663 455689999999998765
Q ss_pred h-----------cchhHH-HHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeec-chhhHH-HHHhhcCCCeEEcccCc
Q 013392 183 E-----------LGFGKE-IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATL-NEKVNH-LAKISLETPVLIGLDEK 248 (444)
Q Consensus 183 ~-----------~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~-~~~~~~-~~~~~~~~~~~~~~~~~ 248 (444)
. .++... +..++..++... . ..........|++++|||+ +..... +...... +.+...
T Consensus 210 ~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~--~--~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~ 281 (1104)
T 4ddu_A 210 KASRNIDTLLMMVGIPEEIIRKAFSTIKQGK--I--YERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRL 281 (1104)
T ss_dssp TSSHHHHHHHHTSSCCHHHHHHHHHHHHHTS--C--CCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBC
T ss_pred cccccchhhhHhcCCCHHHHHHHHHhcccch--h--hhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccC
Confidence 4 455555 677777765100 0 0000001278999999994 433221 1111111 101000
Q ss_pred CCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecc
Q 013392 249 KLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFST 328 (444)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~ 328 (444)
.....++.+.+..+ .+...+..+++.. +.++||||++
T Consensus 282 -----------------------------------~~~~~~i~~~~~~~---~k~~~L~~ll~~~-----~~~~LVF~~s 318 (1104)
T 4ddu_A 282 -----------------------------------VSVARNITHVRISS---RSKEKLVELLEIF-----RDGILIFAQT 318 (1104)
T ss_dssp -----------------------------------CCCCCCEEEEEESC---CCHHHHHHHHHHH-----CSSEEEEESS
T ss_pred -----------------------------------CCCcCCceeEEEec---CHHHHHHHHHHhc-----CCCEEEEECc
Confidence 01123344444444 4666777777763 4799999999
Q ss_pred cchhhhhhhhhhhcccCCCCCchHHHHHhhhccceE-EEecCCCHHHHHHHHHHhhcCCCcEEEE----ecccccCCCCC
Q 013392 329 CDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTF-RLHGNMKQEDRRTTFGAFKTEKKALLLS----TDVAARGLDFP 403 (444)
Q Consensus 329 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~iLi~----t~~~~~G~di~ 403 (444)
+..++.++..|... ++.+. .+||. |.+ ++.|++|+.+|||| |+++++|+|+|
T Consensus 319 ~~~a~~l~~~L~~~-----------------g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip 375 (1104)
T 4ddu_A 319 EEEGKELYEYLKRF-----------------KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLP 375 (1104)
T ss_dssp SHHHHHHHHHHHHT-----------------TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCT
T ss_pred HHHHHHHHHHHHhC-----------------CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCC
Confidence 99999999999887 78887 88882 555 99999999999999 99999999999
Q ss_pred C-CcEEEEccCCC
Q 013392 404 K-VKCIIQYDSAG 415 (444)
Q Consensus 404 ~-~~~vi~~~~~~ 415 (444)
+ +++||+|+.|.
T Consensus 376 ~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 376 ERIKYVIFWGTPS 388 (1104)
T ss_dssp TTCCEEEEESCCE
T ss_pred CCCCEEEEECCCC
Confidence 9 99999999998
No 30
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=7e-42 Score=351.25 Aligned_cols=382 Identities=15% Similarity=0.171 Sum_probs=207.7
Q ss_pred HcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
..|+..|+++|.++++.++.++++++.+|||+|||++++++++..+..... ..+.++|||+|+++|+.||.+++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~----~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS----SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 335677999999999999999999999999999999999998887755321 2366799999999999999999999
Q ss_pred HhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHH-HHHH
Q 013392 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI-EEIL 194 (444)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~-~~~~ 194 (444)
++...+ .....++++.........+..+++|+|+||++|.+.+.......+..+++||+||||++...+....+ ..+.
T Consensus 319 ~~~~~~-~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~ 397 (936)
T 4a2w_A 319 HFERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (936)
T ss_dssp HHHTTT-CCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HhcccC-ceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHH
Confidence 987554 45566666665544444555568999999999999888644436778999999999998776433322 2333
Q ss_pred HHhcCCCCCCCCCCCcccccceeEEEEEeecchhh--------HHHHHh--hcCCCeEEcccCc------CCCCCc-ccc
Q 013392 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKV--------NHLAKI--SLETPVLIGLDEK------KLPEDK-SHV 257 (444)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~--------~~~~~~--~~~~~~~~~~~~~------~~~~~~-~~~ 257 (444)
...... .....+++++|||+.... ..+... .+........... ...... ...
T Consensus 398 ~~~~~~-----------~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~ 466 (936)
T 4a2w_A 398 EQKFNS-----------ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVR 466 (936)
T ss_dssp HHHHTT-----------CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEE
T ss_pred HHhhcc-----------CCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEE
Confidence 221110 011679999999995311 111111 1111111110000 000000 000
Q ss_pred cccC-cccccc--------------cc-cc------CCCccccc------------cCcccccc----------------
Q 013392 258 RFGS-LESDVK--------------EE-VE------HPSTTMRS------------TTEDFKLP---------------- 287 (444)
Q Consensus 258 ~~~~-~~~~~~--------------~~-~~------~~~~~~~~------------~~~~~~~~---------------- 287 (444)
.+.. ...... +. .. ........ .......+
T Consensus 467 ~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~ 546 (936)
T 4a2w_A 467 LVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 546 (936)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 0000 000000 00 00 00000000 00000000
Q ss_pred ----------------------ccceee------------------------------EE-EcCCCCcHHHHHHHHHhhc
Q 013392 288 ----------------------AQLVQR------------------------------YV-KVPCGSRLAVLLSILKHLF 314 (444)
Q Consensus 288 ----------------------~~~~~~------------------------------~~-~~~~~~k~~~l~~~l~~~~ 314 (444)
..+... .. ......|...+..+|.+.+
T Consensus 547 ~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (936)
T 4a2w_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (936)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHh
Confidence 000000 00 0013568888888888876
Q ss_pred ccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhc-CCCcEEEEe
Q 013392 315 DTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT-EKKALLLST 393 (444)
Q Consensus 315 ~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~iLi~t 393 (444)
....+.++||||++++.++.+.+.|.+......... ..+.|.....+||+++..+|.+++++|++ |+.+|||||
T Consensus 627 ~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~-----~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT 701 (936)
T 4a2w_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP-----GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIAT 701 (936)
T ss_dssp TSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCC-----EEC----------------------------CCSEEEEE
T ss_pred ccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccce-----eEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEe
Confidence 566789999999999999999999987521100000 00125556667899999999999999999 999999999
Q ss_pred cccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceE
Q 013392 394 DVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 394 ~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
+++++|+|+|++++||+|++|+|+..|+||+|| ||. +.|.++.++
T Consensus 702 ~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li 746 (936)
T 4a2w_A 702 SVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVT 746 (936)
T ss_dssp CC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEE
T ss_pred CchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEE
Confidence 999999999999999999999999999999999 998 788887765
No 31
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=3.5e-40 Score=343.06 Aligned_cols=324 Identities=19% Similarity=0.211 Sum_probs=243.8
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhc----CC--cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCce
Q 013392 22 SLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILS----GR--HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (444)
Q Consensus 22 ~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~----~~--~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (444)
..+++....+.+.+.++|. ++++|.++++.++. ++ ++++++|||+|||++++.+++..... +.+
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---------g~~ 654 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---------HKQ 654 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---------TCE
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---------CCe
Confidence 3456777888888899997 89999999999885 55 89999999999999999888776533 568
Q ss_pred EEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHH---HHHhc-CCCcEEEeCchHHHHHHhccCccccCCcc
Q 013392 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLR-KGISILVATPGRLLDHLKHTSSFLHTNLR 171 (444)
Q Consensus 96 vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~ 171 (444)
++|++|+++|+.|+.+++.+.+...+ .....+.+....... ...+. +.++|+|+||+.+. +...+.+++
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~~-i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~ 727 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLG 727 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEE
T ss_pred EEEEechHHHHHHHHHHHHHHhhcCC-CeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccc
Confidence 99999999999999999998876554 333444443333222 23333 35899999997663 234567999
Q ss_pred EEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCC
Q 013392 172 WIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP 251 (444)
Q Consensus 172 lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (444)
+||+||+|++ +......+..+.. ..+++++|||+.+...........++..+......
T Consensus 728 lvIiDEaH~~-----g~~~~~~l~~l~~---------------~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~-- 785 (1151)
T 2eyq_A 728 LLIVDEEHRF-----GVRHKERIKAMRA---------------NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR-- 785 (1151)
T ss_dssp EEEEESGGGS-----CHHHHHHHHHHHT---------------TSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB--
T ss_pred eEEEechHhc-----ChHHHHHHHHhcC---------------CCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC--
Confidence 9999999984 3344455555554 77999999999877665555444333322111100
Q ss_pred CCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccch
Q 013392 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (444)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~ 331 (444)
...+...... ..+......++++. ..+++++|||++++.
T Consensus 786 -----------------------------------r~~i~~~~~~---~~~~~i~~~il~~l---~~g~qvlvf~~~v~~ 824 (1151)
T 2eyq_A 786 -----------------------------------RLAVKTFVRE---YDSMVVREAILREI---LRGGQVYYLYNDVEN 824 (1151)
T ss_dssp -----------------------------------CBCEEEEEEE---CCHHHHHHHHHHHH---TTTCEEEEECCCSSC
T ss_pred -----------------------------------ccccEEEEec---CCHHHHHHHHHHHH---hcCCeEEEEECCHHH
Confidence 0011111111 12223333444444 456899999999999
Q ss_pred hhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEc
Q 013392 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (444)
Q Consensus 332 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~ 411 (444)
++.+++.|++. +++..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 825 ~~~l~~~L~~~---------------~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~ 889 (1151)
T 2eyq_A 825 IQKAAERLAEL---------------VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 889 (1151)
T ss_dssp HHHHHHHHHHH---------------CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEET
T ss_pred HHHHHHHHHHh---------------CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEe
Confidence 99999999875 347789999999999999999999999999999999999999999999999999
Q ss_pred cC-CCCcchhhhcccccccCCCcccccceE
Q 013392 412 DS-AGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 412 ~~-~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
+. +.+...|.||+||+||.|+.|.|+.+.
T Consensus 890 ~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~ 919 (1151)
T 2eyq_A 890 RADHFGLAQLHQLRGRVGRSHHQAYAWLLT 919 (1151)
T ss_dssp TTTSSCHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred CCCCCCHHHHHHHHhccCcCCCceEEEEEE
Confidence 88 568899999999999999999998765
No 32
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.9e-42 Score=348.30 Aligned_cols=380 Identities=18% Similarity=0.192 Sum_probs=225.2
Q ss_pred CCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHH-HHHHHHH
Q 013392 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV-YEILHKL 116 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~-~~~l~~~ 116 (444)
++. |+++|.++++.++.++++++.+|||+|||++++++++..+..... .+.+.++||++|+++|+.|| .++++++
T Consensus 5 ~~~-l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 5 MLQ-LRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp --C-CCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH---HTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCC-ccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc---cCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 454 999999999999999999999999999999999999888765321 12236799999999999999 9999998
Q ss_pred hcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhc-----cCccccCCccEEEEechhHhhhcchh-HHH
Q 013392 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKH-----TSSFLHTNLRWIIFDEADRILELGFG-KEI 190 (444)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~-----~~~~~~~~~~lvV~DE~h~~~~~~~~-~~~ 190 (444)
+.. ......+.++.........+..+.+|+|+||+.|.+.+.. ...+.+..+++||+||||++...... ...
T Consensus 81 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 81 LKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp HTT--TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred cCc--CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 865 2455566666555544455557789999999999987742 23456678999999999987554322 222
Q ss_pred HHHHHHh-cCCCCCCCCCCCcccccceeEEEEEeecchh--------hHHHHHh--hcCCCeEEcccCc--C----CCCC
Q 013392 191 EEILDIL-GSRNIGSIGEGNEVSNVKRQNLLLSATLNEK--------VNHLAKI--SLETPVLIGLDEK--K----LPED 253 (444)
Q Consensus 191 ~~~~~~l-~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~--------~~~~~~~--~~~~~~~~~~~~~--~----~~~~ 253 (444)
..++... ..... ..........++++++|||+... ...+... .+........... . ....
T Consensus 159 ~~~l~~~~~~~~~---~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p 235 (699)
T 4gl2_A 159 RHYLMQKLKNNRL---KKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEP 235 (699)
T ss_dssp HHHHHHHHHHHHH---HC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCC
T ss_pred HHHHHhhhccccc---ccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCC
Confidence 2222211 00000 00000000157999999999862 1111111 1111000000000 0 0000
Q ss_pred c-ccccccC-ccc-----------ccccccc-CCCccccc----------------------------------------
Q 013392 254 K-SHVRFGS-LES-----------DVKEEVE-HPSTTMRS---------------------------------------- 279 (444)
Q Consensus 254 ~-~~~~~~~-~~~-----------~~~~~~~-~~~~~~~~---------------------------------------- 279 (444)
. ....+.. ... ....... .+......
T Consensus 236 ~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (699)
T 4gl2_A 236 CKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQIND 315 (699)
T ss_dssp EEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 0 0000000 000 0000000 00000000
Q ss_pred -------------------------------cCccc-cccccc-----------eeeEEEc-CCCCcHHHHHHHHHhhcc
Q 013392 280 -------------------------------TTEDF-KLPAQL-----------VQRYVKV-PCGSRLAVLLSILKHLFD 315 (444)
Q Consensus 280 -------------------------------~~~~~-~~~~~~-----------~~~~~~~-~~~~k~~~l~~~l~~~~~ 315 (444)
..... .....+ ....... ....|...+..+|...+.
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~ 395 (699)
T 4gl2_A 316 TIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYT 395 (699)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 00000 000000 0000000 023455556666665443
Q ss_pred ccc-CceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecC--------CCHHHHHHHHHHhhcCC
Q 013392 316 TEV-SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN--------MKQEDRRTTFGAFKTEK 386 (444)
Q Consensus 316 ~~~-~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~g~ 386 (444)
... +.++||||++++.++.+++.|.+..... ..|+++..+||+ ++..+|.++++.|++|+
T Consensus 396 ~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~-----------~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~ 464 (699)
T 4gl2_A 396 RTEESARGIIFTKTRQSAYALSQWITENEKFA-----------EVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK 464 (699)
T ss_dssp HSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC----------------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC--
T ss_pred cCCCCCcEEEEECcHHHHHHHHHHHHhCcccc-----------ccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCC
Confidence 334 7899999999999999999998641110 126788999999 99999999999999999
Q ss_pred CcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceE
Q 013392 387 KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 387 ~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
.+|||||+++++|+|+|++++||+|++|+|+..|+||+||+||.| .++.++
T Consensus 465 ~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~ 515 (699)
T 4gl2_A 465 INLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLV 515 (699)
T ss_dssp -CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEE
T ss_pred CcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEE
Confidence 999999999999999999999999999999999999999976654 444444
No 33
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.3e-41 Score=333.65 Aligned_cols=320 Identities=20% Similarity=0.260 Sum_probs=227.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHhHHHhHhcC------CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 27 STLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
..+.+.+.+.++| .|+++|.++++.+..+ .++++++|||+|||++++++++..+.. +.+++|++
T Consensus 355 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---------g~qvlvla 424 (780)
T 1gm5_A 355 GKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMV 424 (780)
T ss_dssp THHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEEC
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---------CCeEEEEe
Confidence 3455555588899 5999999999998864 589999999999999999999988754 56799999
Q ss_pred ccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHH---HHHhc-CCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 101 PTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 101 P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
|+++|+.|+.+.+.+++...+ .....++++...... ...+. +.++|+|+||+.+.+ ...+.++++||+|
T Consensus 425 Ptr~La~Q~~~~l~~~~~~~g-i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVID 497 (780)
T 1gm5_A 425 PTSILAIQHYRRTVESFSKFN-IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIID 497 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEE
T ss_pred CcHHHHHHHHHHHHHHhhhcC-ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEec
Confidence 999999999999999987554 445566666555443 22333 458999999987754 2345789999999
Q ss_pred chhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCccc
Q 013392 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (444)
Q Consensus 177 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (444)
|+|++.... . ..+... ...++++++|||+.+...........+...+..... ..
T Consensus 498 EaHr~g~~q-----r---~~l~~~------------~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~----~r-- 551 (780)
T 1gm5_A 498 EQHRFGVKQ-----R---EALMNK------------GKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPP----GR-- 551 (780)
T ss_dssp SCCCC-------------CCCCSS------------SSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCS----SC--
T ss_pred ccchhhHHH-----H---HHHHHh------------CCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCC----CC--
Confidence 999853221 1 011110 126789999999876544433321111111100000 00
Q ss_pred ccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccch-----
Q 013392 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA----- 331 (444)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~----- 331 (444)
..+. .......+...+...+.... ..+.+++|||+.+++
T Consensus 552 -------------------------------~~i~---~~~~~~~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~ 595 (780)
T 1gm5_A 552 -------------------------------KEVQ---TMLVPMDRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLN 595 (780)
T ss_dssp -------------------------------CCCE---ECCCCSSTHHHHHHHHHHHT--TTSCCBCCBCCCC-------
T ss_pred -------------------------------cceE---EEEeccchHHHHHHHHHHHH--hcCCcEEEEecchhhhhhhh
Confidence 0000 11112233445555555442 456789999997654
Q ss_pred ---hhhhhhhhhh-cccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcE
Q 013392 332 ---VDFHYSLLSE-FQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407 (444)
Q Consensus 332 ---~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~ 407 (444)
++.+++.|.+ . +++..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 596 ~~~a~~l~~~L~~~~---------------~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~ 660 (780)
T 1gm5_A 596 VKSAVEMYEYLSKEV---------------FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANV 660 (780)
T ss_dssp -CHHHHHHHSGGGSC---------------C---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCE
T ss_pred HHHHHHHHHHHHhhh---------------cCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCE
Confidence 5666666655 2 23778999999999999999999999999999999999999999999999
Q ss_pred EEEccCCC-CcchhhhcccccccCCCcccccceE
Q 013392 408 IIQYDSAG-EATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 408 vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
||++++|. +...|.||+||+||.|++|.|+.+.
T Consensus 661 VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~ 694 (780)
T 1gm5_A 661 MVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVV 694 (780)
T ss_dssp EEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCC
T ss_pred EEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEE
Confidence 99999986 6888999999999999999988764
No 34
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.2e-40 Score=339.68 Aligned_cols=368 Identities=17% Similarity=0.140 Sum_probs=245.8
Q ss_pred HHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHH
Q 013392 33 LRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (444)
Q Consensus 33 l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 112 (444)
+...++|. |+++|.++++.+++++++++.+|||+|||+++++++...... +.++||++|+++|+.|+++.
T Consensus 32 ~~~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---------g~~vlvl~PtraLa~Q~~~~ 101 (997)
T 4a4z_A 32 PARSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---------MTKTIYTSPIKALSNQKFRD 101 (997)
T ss_dssp CSCCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---------TCEEEEEESCGGGHHHHHHH
T ss_pred HHHhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHH
Confidence 34567887 999999999999999999999999999999988888776533 56799999999999999999
Q ss_pred HHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHH
Q 013392 113 LHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEE 192 (444)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~ 192 (444)
+.+.+. ......+.++... ..+++|+|+||+.|.+.+.. ....+..+++||+||+|++.+.+++..+..
T Consensus 102 l~~~~~---~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ 170 (997)
T 4a4z_A 102 FKETFD---DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYVNDQDRGVVWEE 170 (997)
T ss_dssp HHTTC-----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEECCTTCCCTTCTTCCHHH
T ss_pred HHHHcC---CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEECcccccccchHHHHHH
Confidence 998754 2444555555432 24478999999999998876 444567899999999999988888888888
Q ss_pred HHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhc---CCCeEEcccCcCCCCCcccccccCcccccccc
Q 013392 193 ILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL---ETPVLIGLDEKKLPEDKSHVRFGSLESDVKEE 269 (444)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (444)
+...++. ..+++++|||+++......+... .....+.......+-...... ........+.
T Consensus 171 ii~~l~~---------------~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~-~~~~~~~~~~ 234 (997)
T 4a4z_A 171 VIIMLPQ---------------HVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWA-KKELIPVINQ 234 (997)
T ss_dssp HHHHSCT---------------TCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEE-TTEEEEEECT
T ss_pred HHHhccc---------------CCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEec-CCcchhcccc
Confidence 8888876 78999999999876543333221 111122111111111100000 0000000000
Q ss_pred ---------------ccCCC-----c-----ccc-----------ccC--------------------ccccccccceee
Q 013392 270 ---------------VEHPS-----T-----TMR-----------STT--------------------EDFKLPAQLVQR 293 (444)
Q Consensus 270 ---------------~~~~~-----~-----~~~-----------~~~--------------------~~~~~~~~~~~~ 293 (444)
..... . ... ... ...........+
T Consensus 235 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 314 (997)
T 4a4z_A 235 NSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFF 314 (997)
T ss_dssp TCCBCHHHHHHHHHHHC---------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000 0 000 000 000000001111
Q ss_pred EEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCC---------------Cc-------h
Q 013392 294 YVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHS---------------QP-------D 351 (444)
Q Consensus 294 ~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~---------------~~-------~ 351 (444)
....+...+...+...+.. ....++||||+++..++.++..|.+....... .. .
T Consensus 315 ~~~~~~~~~~~~li~~l~~----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~ 390 (997)
T 4a4z_A 315 TQDGPSKKTWPEIVNYLRK----RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQ 390 (997)
T ss_dssp --CCCCTTHHHHHHHHHHH----TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHH
T ss_pred cccccchhHHHHHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchh
Confidence 2222344455566666654 34579999999999999999999764332100 00 0
Q ss_pred HHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCC---------Ccchhhh
Q 013392 352 MELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG---------EATEYVH 422 (444)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~---------s~~~~~Q 422 (444)
...........+..+|++++..+|..+++.|.+|..+|||||+++++|+|+|+ ..||+++.+. |...|+|
T Consensus 391 ~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Q 469 (997)
T 4a4z_A 391 ILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQ 469 (997)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHH
T ss_pred HHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhH
Confidence 00011123557899999999999999999999999999999999999999999 5566655555 8999999
Q ss_pred cccccccCCCcccccceEEe
Q 013392 423 RYLKHLPVGNFYFNIPLIVC 442 (444)
Q Consensus 423 ~~GR~~R~g~~g~~~~~i~~ 442 (444)
|+||+||.|..+.+++++.+
T Consensus 470 r~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 470 MAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HHGGGCCTTTCSSEEEEEEC
T ss_pred HhcccccCCCCcceEEEEec
Confidence 99999999987777777765
No 35
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.5e-40 Score=348.94 Aligned_cols=379 Identities=15% Similarity=0.092 Sum_probs=260.3
Q ss_pred ccchhhhhhccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHh-cCCcEEEEcCCCCchhHHhHHHHHHHHhc
Q 013392 5 SKKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQS 83 (444)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~-~~~~~il~~~tG~GKT~~~~~~~~~~~~~ 83 (444)
+.+..++++++...+..-..|++...+.+ ...+|..++|+|.++++.++ +++++++++|||+|||+++.++++..+..
T Consensus 891 p~~~~~~t~lldl~plp~s~L~~~~~e~l-~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~ 969 (1724)
T 4f92_B 891 PEKYPPPTELLDLQPLPVSALRNSAFESL-YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ 969 (1724)
T ss_dssp CCCCCCCCCCCCCCCCBGGGSCCHHHHTT-TTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccCCCCCcccccCHHHHHH-HHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh
Confidence 44445667777777777677888888888 44489999999999999997 56789999999999999999999999876
Q ss_pred cCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccC
Q 013392 84 YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS 163 (444)
Q Consensus 84 ~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~ 163 (444)
.++.++++++|+++|+.|..+.+++.+..........++|+...+ . ....+++|+||||+++..++.++.
T Consensus 970 -------~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~-~--~~~~~~~IiV~TPEkld~llr~~~ 1039 (1724)
T 4f92_B 970 -------SSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD-L--KLLGKGNIIISTPEKWDILSRRWK 1039 (1724)
T ss_dssp -------CTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHH-H--HHHHHCSEEEECHHHHHHHHTTTT
T ss_pred -------CCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcc-h--hhcCCCCEEEECHHHHHHHHhCcc
Confidence 346679999999999999999998765443234445555443322 1 223457899999999987776533
Q ss_pred c-cccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeE
Q 013392 164 S-FLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVL 242 (444)
Q Consensus 164 ~-~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~ 242 (444)
. ..++++++||+||+|.+.+ ..+..+..++.++.... .....+.|++++|||+++..+...++.......
T Consensus 1040 ~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~--------~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~ 1110 (1724)
T 4f92_B 1040 QRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYIS--------SQIERPIRIVALSSSLSNAKDVAHWLGCSATST 1110 (1724)
T ss_dssp TCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHH--------HTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTE
T ss_pred cccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHH--------hhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCe
Confidence 2 2457899999999997765 45655555554442100 001127899999999988654444444333333
Q ss_pred EcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCC-------cHHHHHHHHHhhcc
Q 013392 243 IGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS-------RLAVLLSILKHLFD 315 (444)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------k~~~l~~~l~~~~~ 315 (444)
..+.....| ..+.......+... ....+...+...
T Consensus 1111 ~~~~~~~RP------------------------------------vpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-- 1152 (1724)
T 4f92_B 1111 FNFHPNVRP------------------------------------VPLELHIQGFNISHTQTRLLSMAKPVYHAITKH-- 1152 (1724)
T ss_dssp EECCGGGCS------------------------------------SCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH--
T ss_pred EEeCCCCCC------------------------------------CCeEEEEEeccCCCchhhhhhhcchHHHHHHHh--
Confidence 222222111 11111111111111 111223334333
Q ss_pred cccCceEEEEecccchhhhhhhhhhhcccCCCC------Cch-----------HHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 316 TEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHS------QPD-----------MELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 316 ~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
..+.++||||+++..++.++..+......... ... +..........++.+|++++..+|..+
T Consensus 1153 -~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~V 1231 (1724)
T 4f92_B 1153 -SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLV 1231 (1724)
T ss_dssp -CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHH
T ss_pred -cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHH
Confidence 55689999999999999888766443211100 000 111122346689999999999999999
Q ss_pred HHHhhcCCCcEEEEecccccCCCCCCCcEEEE----c------cCCCCcchhhhcccccccCCCcccccceEEe
Q 013392 379 FGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ----Y------DSAGEATEYVHRYLKHLPVGNFYFNIPLIVC 442 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~----~------~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~~ 442 (444)
++.|++|.++|||||+++++|+|+|...+||. | ..|.+..+|.||+||+||.|..+.+.+++.|
T Consensus 1232 E~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~ 1305 (1724)
T 4f92_B 1232 EQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMC 1305 (1724)
T ss_dssp HHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEE
T ss_pred HHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEe
Confidence 99999999999999999999999999988883 2 2356789999999999999987666666654
No 36
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4.2e-40 Score=320.65 Aligned_cols=363 Identities=14% Similarity=0.136 Sum_probs=247.0
Q ss_pred HcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
.+|| +|+++|..+++.++.|+ |..++||+|||++|++|++..... +..++||+||++|+.|.++++..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---------g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 5799 79999999999999998 999999999999999999865433 44699999999999999999999
Q ss_pred HhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHH-HHHHhcc-----CccccCCccEEEEechhHhh-hcc---
Q 013392 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRIL-ELG--- 185 (444)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~-----~~~~~~~~~lvV~DE~h~~~-~~~--- 185 (444)
+...++ ....++.+|..... +....+++|+|+||..| ++++... ....++.+.++|+||||+++ +.+
T Consensus 147 l~~~lg-l~v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tp 223 (844)
T 1tf5_A 147 IFEFLG-LTVGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTP 223 (844)
T ss_dssp HHHHTT-CCEEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCE
T ss_pred HHhhcC-CeEEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccc
Confidence 988765 55566777765433 33344689999999999 6665542 23566889999999999998 542
Q ss_pred ------------hhHHHHHHHHHhcCCCCCCCCCCCcccccceeEE-----------------EEEeecchhhHHHHH--
Q 013392 186 ------------FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNL-----------------LLSATLNEKVNHLAK-- 234 (444)
Q Consensus 186 ------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i-----------------~~Sat~~~~~~~~~~-- 234 (444)
+...+..++..++.. .........+|+. ++|||.+.....+..
T Consensus 224 lIisg~~~~~~~~~~~i~~iv~~l~~~------~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al 297 (844)
T 1tf5_A 224 LIISGQAAKSTKLYVQANAFVRTLKAE------KDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQAL 297 (844)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTCCSS------SSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHH
T ss_pred hhhcCCcccchhHHHHHHHHHHhCccc------ccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHH
Confidence 567777787777531 0111112255665 789997643333221
Q ss_pred ---hhc-CCCeEE-------cccCcCCCCCcccccccCcccccc---ccccCCC------------------------cc
Q 013392 235 ---ISL-ETPVLI-------GLDEKKLPEDKSHVRFGSLESDVK---EEVEHPS------------------------TT 276 (444)
Q Consensus 235 ---~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------------------~~ 276 (444)
.++ .+..++ .++.. -.......++.+.-.... +...... ..
T Consensus 298 ~A~~l~~~d~dYiv~dg~v~ivDe~-tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGT 376 (844)
T 1tf5_A 298 KAHVAMQKDVDYVVEDGQVVIVDSF-TGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGT 376 (844)
T ss_dssp HHHHTCCBTTTEEEETTEEEEBCTT-TCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESC
T ss_pred HHHHHhhcCCceEEecCeeEEeecc-cccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcc
Confidence 111 122111 11100 000000000000000000 0000000 00
Q ss_pred ---------------ccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhh
Q 013392 277 ---------------MRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE 341 (444)
Q Consensus 277 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~ 341 (444)
......+......-...++......|...+...+.+.. ..+.++||||++++.++.++..|..
T Consensus 377 a~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~--~~~~pvLVft~s~~~se~Ls~~L~~ 454 (844)
T 1tf5_A 377 AKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRY--MTGQPVLVGTVAVETSELISKLLKN 454 (844)
T ss_dssp CGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHH
Confidence 00000000000011122444556678888888776642 3467899999999999999999998
Q ss_pred cccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCC--------CCcEEEEccC
Q 013392 342 FQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP--------KVKCIIQYDS 413 (444)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~--------~~~~vi~~~~ 413 (444)
. |+++..+||++.+.++..+.+.++.| .|+|||+++++|+|++ +..+||+++.
T Consensus 455 ~-----------------gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~ 515 (844)
T 1tf5_A 455 K-----------------GIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER 515 (844)
T ss_dssp T-----------------TCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC
T ss_pred C-----------------CCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecC
Confidence 7 89999999999888887666666655 7999999999999999 7889999999
Q ss_pred CCCcchhhhcccccccCCCcccccceEE
Q 013392 414 AGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 414 ~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
|.|.+.|.||+||+||.|++|.+++|+.
T Consensus 516 p~s~r~y~hr~GRTGRqG~~G~s~~~vs 543 (844)
T 1tf5_A 516 HESRRIDNQLRGRSGRQGDPGITQFYLS 543 (844)
T ss_dssp CSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred CCCHHHHHhhcCccccCCCCCeEEEEec
Confidence 9999999999999999999999998875
No 37
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.2e-41 Score=349.03 Aligned_cols=324 Identities=18% Similarity=0.227 Sum_probs=235.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHH
Q 013392 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (444)
Q Consensus 28 ~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~ 107 (444)
...+.+.+.+||. | ++|.++++.++.|+++++++|||+|||+ +.++++..+.. .+.++||++|+++|+.
T Consensus 45 ~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~ 113 (1054)
T 1gku_B 45 EFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVI 113 (1054)
T ss_dssp HHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHH
T ss_pred HHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHH
Confidence 3456677788999 9 9999999999999999999999999998 77777776644 3567999999999999
Q ss_pred HHHHHHHHHhcccCce---eeEEEeCCcchhHH---HHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHh
Q 013392 108 QVYEILHKLLHRFHWI---VPGYVMGGENRSKE---KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI 181 (444)
Q Consensus 108 q~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~ 181 (444)
|+.+.+++++...+.. ....++++...... ...+.. ++|+|+||++|.+.+.+ ++.+++||+||+|++
T Consensus 114 Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~ 187 (1054)
T 1gku_B 114 QAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAI 187 (1054)
T ss_dssp HHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhh
Confidence 9999999998765431 55666676665542 333445 89999999999987664 458999999999998
Q ss_pred hhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccC
Q 013392 182 LELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGS 261 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (444)
.+ ++..+..++..++..... .........|.+++|||++.. ..+...++..+..+.+....
T Consensus 188 l~--~~~~~~~i~~~lgf~~~~----~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~------------ 248 (1054)
T 1gku_B 188 LK--ASKNVDKLLHLLGFHYDL----KTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR------------ 248 (1054)
T ss_dssp HT--STHHHHHHHHHTTEEEET----TTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE------------
T ss_pred hh--ccccHHHHHHHhCcchhh----hhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc------------
Confidence 88 577778887776421100 001112367899999998876 32222222222111111100
Q ss_pred ccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhh
Q 013392 262 LESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE 341 (444)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~ 341 (444)
.....+.+.+. ...+...+..+++.. +.++||||++++.++.+++.|+.
T Consensus 249 -----------------------~~~~~i~~~~~---~~~k~~~L~~ll~~~-----~~~~LVF~~t~~~a~~l~~~L~~ 297 (1054)
T 1gku_B 249 -----------------------ITVRNVEDVAV---NDESISTLSSILEKL-----GTGGIIYARTGEEAEEIYESLKN 297 (1054)
T ss_dssp -----------------------ECCCCEEEEEE---SCCCTTTTHHHHTTS-----CSCEEEEESSHHHHHHHHHTTTT
T ss_pred -----------------------cCcCCceEEEe---chhHHHHHHHHHhhc-----CCCEEEEEcCHHHHHHHHHHHhh
Confidence 01122333333 345555566666543 56899999999999999999976
Q ss_pred cccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEE----ecccccCCCCCCC-cEEEEccCC--
Q 013392 342 FQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS----TDVAARGLDFPKV-KCIIQYDSA-- 414 (444)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~----t~~~~~G~di~~~-~~vi~~~~~-- 414 (444)
. +.+..+||++ .++++.|++|+.+|||| |+++++|+|+|+| ++||+++.|
T Consensus 298 ~------------------~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~ 354 (1054)
T 1gku_B 298 K------------------FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSF 354 (1054)
T ss_dssp S------------------SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEE
T ss_pred c------------------cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcc
Confidence 3 4688899988 37789999999999999 8999999999995 999999999
Q ss_pred ---------------------------------------------------------------------CCcchhhhccc
Q 013392 415 ---------------------------------------------------------------------GEATEYVHRYL 425 (444)
Q Consensus 415 ---------------------------------------------------------------------~s~~~~~Q~~G 425 (444)
.+..+|+||+|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~G 434 (1054)
T 1gku_B 355 RVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSG 434 (1054)
T ss_dssp EEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHH
T ss_pred cccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhc
Confidence 68999999999
Q ss_pred ccccCCCccc--ccceEE
Q 013392 426 KHLPVGNFYF--NIPLIV 441 (444)
Q Consensus 426 R~~R~g~~g~--~~~~i~ 441 (444)
|+||.|..|. +++++.
T Consensus 435 RagR~g~~g~~~g~~~~~ 452 (1054)
T 1gku_B 435 RTSRLFAGGLTKGASFLL 452 (1054)
T ss_dssp TTCCEETTEECCEEEEEE
T ss_pred hhhhccCCCCceEEEEEE
Confidence 9999888764 666654
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=3.6e-40 Score=320.72 Aligned_cols=336 Identities=14% Similarity=0.124 Sum_probs=226.2
Q ss_pred CCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhccc
Q 013392 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~ 120 (444)
.|+++|.++++.++.++++++++|||+|||++++.++...+.. ...++|||+|+++|+.||.+++.++....
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 4999999999999999999999999999999999888877654 23479999999999999999998874322
Q ss_pred CceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCC
Q 013392 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (444)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~ 200 (444)
......+.++...... ...+.+|+|+||+.+... ....+.++++||+||+|++.. .....++..+..
T Consensus 185 -~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~- 251 (510)
T 2oca_A 185 -HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNN- 251 (510)
T ss_dssp -GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTT-
T ss_pred -ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhccc-
Confidence 2334445554443322 456789999999976542 234456899999999998755 334445454433
Q ss_pred CCCCCCCCCcccccceeEEEEEeecchhhHHH-HHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccc
Q 013392 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHL-AKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRS 279 (444)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (444)
..+++++|||+++..... ....+..+..+...............+...... .........
T Consensus 252 --------------~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~- 312 (510)
T 2oca_A 252 --------------CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIF----LRYPDEFTT- 312 (510)
T ss_dssp --------------CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEE----EECCHHHHH-
T ss_pred --------------CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEe----ecCChHHhc-
Confidence 678999999997654332 222222333333222211111000000000000 000000000
Q ss_pred cCcccccccccee-eEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhh
Q 013392 280 TTEDFKLPAQLVQ-RYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLF 358 (444)
Q Consensus 280 ~~~~~~~~~~~~~-~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 358 (444)
.. ....... .........+...+...+..... ..+.+++||++ .++++.+.+.|.+.
T Consensus 313 ~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~ivf~~-~~~~~~l~~~L~~~---------------- 370 (510)
T 2oca_A 313 KL----KGKTYQEEIKIITGLSKRNKWIAKLAIKLAQ-KDENAFVMFKH-VSHGKAIFDLIKNE---------------- 370 (510)
T ss_dssp HH----TTCCHHHHHHHHHTCHHHHHHHHHHHHHHHT-TTCEEEEEESS-HHHHHHHHHHHHTT----------------
T ss_pred cc----cccchHHHHHHHhccHHHHHHHHHHHHHHHh-cCCCeEEEEec-HHHHHHHHHHHHHc----------------
Confidence 00 0000000 00111223445556666655432 23456666666 88888899999876
Q ss_pred hccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEe-cccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCccccc
Q 013392 359 LRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST-DVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNI 437 (444)
Q Consensus 359 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t-~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~ 437 (444)
+.++..+||+++..+|.++++.|++|+.+||||| +++++|+|+|+++.||++++|++...|.|++||+||.|+.|..+
T Consensus 371 -~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v 449 (510)
T 2oca_A 371 -YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIA 449 (510)
T ss_dssp -CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCC
T ss_pred -CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceE
Confidence 5589999999999999999999999999999999 99999999999999999999999999999999999999877544
Q ss_pred ce
Q 013392 438 PL 439 (444)
Q Consensus 438 ~~ 439 (444)
.+
T Consensus 450 ~i 451 (510)
T 2oca_A 450 TV 451 (510)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.6e-38 Score=339.52 Aligned_cols=355 Identities=19% Similarity=0.208 Sum_probs=238.8
Q ss_pred CCCCCCHHHHhHHHhHh-cCCcEEEEcCCCCchhHHhHHHHHHHHhccCC--CCCCCCCceEEEEeccHHHHHHHHHHHH
Q 013392 38 GFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSP--RIDRSSGTFALVLVPTRELCLQVYEILH 114 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~-~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~--~~~~~~~~~vlil~P~~~L~~q~~~~l~ 114 (444)
||..|+++|.++++.++ +++++++++|||+|||++|.++++..+..... ......+.++|+++|+++|+.|..+.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 79999999999999877 67899999999999999999999998876432 2223457889999999999999999999
Q ss_pred HHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCc-cccCCccEEEEechhHhhhcchhHHHHHH
Q 013392 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS-FLHTNLRWIIFDEADRILELGFGKEIEEI 193 (444)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~-~~~~~~~lvV~DE~h~~~~~~~~~~~~~~ 193 (444)
+.+...+ .....++|+...... ...+++|+|+||+++..++.+... ..++.+++||+||+|.+.+ ..+..++.+
T Consensus 156 ~~~~~~g-i~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~ 230 (1724)
T 4f92_B 156 KRLATYG-ITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEAL 230 (1724)
T ss_dssp HHHTTTT-CCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHH
T ss_pred HHHhhCC-CEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHH
Confidence 9887765 344555555433221 234579999999998666654322 2467899999999996544 566666555
Q ss_pred HHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCC--eEEcccCcCCCCCcccccccCcccccccccc
Q 013392 194 LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP--VLIGLDEKKLPEDKSHVRFGSLESDVKEEVE 271 (444)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (444)
+.++... ........|++++|||+++. ..+..+....+ ....+...+.
T Consensus 231 l~rl~~~--------~~~~~~~~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~~~~R--------------------- 280 (1724)
T 4f92_B 231 VARAIRN--------IEMTQEDVRLIGLSATLPNY-EDVATFLRVDPAKGLFYFDNSFR--------------------- 280 (1724)
T ss_dssp HHHHHHH--------HHHHTCCCEEEEEECSCTTH-HHHHHHTTCCHHHHEEECCGGGC---------------------
T ss_pred HHHHHHH--------HHhCCCCCcEEEEecccCCH-HHHHHHhCCCCCCCeEEECCCCc---------------------
Confidence 4432100 00001178999999999874 34444332211 1111111110
Q ss_pred CCCccccccCccccccccceeeEEEcCCCC---cHHHHHHHHHh-hcccccCceEEEEecccchhhhhhhhhhhcccCCC
Q 013392 272 HPSTTMRSTTEDFKLPAQLVQRYVKVPCGS---RLAVLLSILKH-LFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPH 347 (444)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~~l~~-~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~ 347 (444)
|..+.+.++...... +...+...+.. ..+...++++||||++++.++.+++.|.+......
T Consensus 281 ---------------PvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~ 345 (1724)
T 4f92_B 281 ---------------PVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKD 345 (1724)
T ss_dssp ---------------SSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTT
T ss_pred ---------------cCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 011222222222211 11112222211 12224567999999999999998887765321110
Q ss_pred ----------CC----------chHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcE
Q 013392 348 ----------SQ----------PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407 (444)
Q Consensus 348 ----------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~ 407 (444)
.. .............++.+||+++.++|..+++.|++|.++|||||++++.|+|+|..++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~v 425 (1724)
T 4f92_B 346 TLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTV 425 (1724)
T ss_dssp STTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEE
T ss_pred chhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceE
Confidence 00 0111112234667899999999999999999999999999999999999999999999
Q ss_pred EEE----cc------CCCCcchhhhcccccccCCCcccccceEEe
Q 013392 408 IIQ----YD------SAGEATEYVHRYLKHLPVGNFYFNIPLIVC 442 (444)
Q Consensus 408 vi~----~~------~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~~ 442 (444)
||. |+ .|.+..+|.||+|||||.|....+.++++|
T Consensus 426 VI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 426 IIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp EEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred EEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEe
Confidence 985 33 345788999999999999876666666654
No 40
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.7e-38 Score=306.43 Aligned_cols=367 Identities=14% Similarity=0.119 Sum_probs=252.0
Q ss_pred HHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHH
Q 013392 32 QLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (444)
Q Consensus 32 ~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 111 (444)
.....+|+ +|+++|..+++.++.|+ |..++||+|||+++++|++..... +..|+||+||+.|+.|.++
T Consensus 103 a~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---------g~~v~VvTpTreLA~Qdae 170 (922)
T 1nkt_A 103 AAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---------GNGVHIVTVNDYLAKRDSE 170 (922)
T ss_dssp HHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---------TSCEEEEESSHHHHHHHHH
T ss_pred HHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---------CCCeEEEeCCHHHHHHHHH
Confidence 34345799 69999999999999998 999999999999999999765543 3469999999999999999
Q ss_pred HHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHH-HHHHhcc-----CccccCCccEEEEechhHhhhc-
Q 013392 112 ILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRILEL- 184 (444)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~-----~~~~~~~~~lvV~DE~h~~~~~- 184 (444)
++..+...++ +...++.+|.... .+....+++|+|+||..| ++++... ....++.+.++|+||||+++.+
T Consensus 171 ~m~~l~~~lG-Lsv~~i~gg~~~~--~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDe 247 (922)
T 1nkt_A 171 WMGRVHRFLG-LQVGVILATMTPD--ERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDE 247 (922)
T ss_dssp HHHHHHHHTT-CCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTG
T ss_pred HHHHHHhhcC-CeEEEEeCCCCHH--HHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhc
Confidence 9999988776 5556667766543 233344689999999999 7777652 2456678999999999999842
Q ss_pred ---------------chhHHHHHHHHHhcCCCCCCCCCCCcccccceeEE-----------------EEEeecchhhHHH
Q 013392 185 ---------------GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNL-----------------LLSATLNEKVNHL 232 (444)
Q Consensus 185 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i-----------------~~Sat~~~~~~~~ 232 (444)
++...+..++..++... ........+|+. ++|||.+.....+
T Consensus 248 artPLiiSg~~~~~~~~y~~i~~iv~~L~~~~------dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i 321 (922)
T 1nkt_A 248 ARTPLIISGPADGASNWYTEFARLAPLMEKDV------HYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYL 321 (922)
T ss_dssp GGSCEEEEEECCCCHHHHHHHHHHHHHSCBTT------TEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHH
T ss_pred CccceeecCCCCcchhHHHHHHHHHHhCcccc------cceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHH
Confidence 36678888888886210 011111267777 7889876433332
Q ss_pred HH------hhcCCCeE-------EcccCcCCCCCcccccccCccccccc---cccCC-----------------------
Q 013392 233 AK------ISLETPVL-------IGLDEKKLPEDKSHVRFGSLESDVKE---EVEHP----------------------- 273 (444)
Q Consensus 233 ~~------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----------------------- 273 (444)
.. ++..+..+ +.++... ...-...++.+.-....+ .....
T Consensus 322 ~~aL~A~~l~~~d~dYiV~dg~vviVDe~T-GR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~G 400 (922)
T 1nkt_A 322 NNALKAKELFSRDKDYIVRDGEVLIVDEFT-GRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAG 400 (922)
T ss_dssp HHHHHHHHHCCBTTTEEECSSCEEEBCSSS-CCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEE
T ss_pred HHHHHHHHHhhcccceeeecCceEEEeccc-CcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhc
Confidence 21 11112111 1111100 000000000000000000 00000
Q ss_pred ----------------CccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhh
Q 013392 274 ----------------STTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (444)
Q Consensus 274 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~ 337 (444)
.........+......-....+......|...+...+.+.. ..+.++||||++++.++.+++
T Consensus 401 MTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~--~~gqpvLVft~Sie~sE~Ls~ 478 (922)
T 1nkt_A 401 MTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERY--AKGQPVLIGTTSVERSEYLSR 478 (922)
T ss_dssp EESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHH
T ss_pred cccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHH
Confidence 00000000001111111122344556678888888876642 346799999999999999999
Q ss_pred hhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCC------------
Q 013392 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKV------------ 405 (444)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~------------ 405 (444)
.|.+. |+++..+||+....++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 479 ~L~~~-----------------Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~ 539 (922)
T 1nkt_A 479 QFTKR-----------------RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLR 539 (922)
T ss_dssp HHHHT-----------------TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHH
T ss_pred HHHHC-----------------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHh
Confidence 99987 89999999998888887888888877 799999999999999865
Q ss_pred ----------------------------------------cEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 406 ----------------------------------------KCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 406 ----------------------------------------~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
.+||+++.|.|.+.|.||+||+||.|++|.++.|+.
T Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflS 615 (922)
T 1nkt_A 540 ERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLS 615 (922)
T ss_dssp HTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEE
T ss_pred hccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEec
Confidence 499999999999999999999999999999999875
No 41
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.4e-38 Score=309.11 Aligned_cols=373 Identities=16% Similarity=0.109 Sum_probs=226.6
Q ss_pred HHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHH
Q 013392 33 LRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (444)
Q Consensus 33 l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 112 (444)
....+|.. |+++|..+++.+++|+ +..++||+|||+++++|++..... +..++|++||++|+.|.+++
T Consensus 67 ~~R~lg~~-p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---------g~~vlVltPTreLA~Q~~e~ 134 (853)
T 2fsf_A 67 SKRVFGMR-HFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAEN 134 (853)
T ss_dssp HHHHHSCC-CCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---------SSCCEEEESSHHHHHHHHHH
T ss_pred HHHHcCCC-CChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHH
Confidence 33446874 9999999999999998 999999999999999999865533 45699999999999999999
Q ss_pred HHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHH-HHHHhccC-----ccccCCccEEEEechhHhh-hcc
Q 013392 113 LHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTS-----SFLHTNLRWIIFDEADRIL-ELG 185 (444)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~~-----~~~~~~~~lvV~DE~h~~~-~~~ 185 (444)
+..++..++ .....+++|.... .+....+++|+|+||..| ++++...- ...++.+.++|+||+|+++ +.+
T Consensus 135 ~~~l~~~lg-l~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a 211 (853)
T 2fsf_A 135 NRPLFEFLG-LTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEA 211 (853)
T ss_dssp HHHHHHHTT-CCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTT
T ss_pred HHHHHHhcC-CeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcC
Confidence 999988776 5556777776543 333444689999999999 77776522 3456889999999999998 332
Q ss_pred ---------------hhHHHHHHHHHhcCCCC----CCC-CCCCcccccceeEE------------------------EE
Q 013392 186 ---------------FGKEIEEILDILGSRNI----GSI-GEGNEVSNVKRQNL------------------------LL 221 (444)
Q Consensus 186 ---------------~~~~~~~~~~~l~~~~~----~~~-~~~~~~~~~~~~~i------------------------~~ 221 (444)
+...+..++..++.... +.. ..........+|+. ++
T Consensus 212 ~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lf 291 (853)
T 2fsf_A 212 RTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLY 291 (853)
T ss_dssp TCEEEEEEC-----------------------------------------------------------------------
T ss_pred cccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCccccccccc
Confidence 44566677766653100 000 00000011122322 67
Q ss_pred EeecchhhHHHHH-----hhc-C-------CCeEEcccCc---CCCC------------------------CcccccccC
Q 013392 222 SATLNEKVNHLAK-----ISL-E-------TPVLIGLDEK---KLPE------------------------DKSHVRFGS 261 (444)
Q Consensus 222 Sat~~~~~~~~~~-----~~~-~-------~~~~~~~~~~---~~~~------------------------~~~~~~~~~ 261 (444)
|||.+.....+.. ..+ . ++..+.++.. ..+. ..+.+.+..
T Consensus 292 sat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qn 371 (853)
T 2fsf_A 292 SPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQN 371 (853)
T ss_dssp -----------------------------------------------------------------CCCCCEEEEEEEHHH
T ss_pred CcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHH
Confidence 8876432222111 001 0 1111101100 0000 000000000
Q ss_pred --------------ccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEec
Q 013392 262 --------------LESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFS 327 (444)
Q Consensus 262 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~ 327 (444)
......+-.............+...........+......|...+...+.+.. ..+.++||||+
T Consensus 372 yfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~--~~gqpvLVft~ 449 (853)
T 2fsf_A 372 YFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT--AKGQPVLVGTI 449 (853)
T ss_dssp HHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--TTTCCEEEEES
T ss_pred HHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHh--cCCCCEEEEEC
Confidence 00000000000000000000011111111222445566778888888887652 34679999999
Q ss_pred ccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCC--
Q 013392 328 TCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKV-- 405 (444)
Q Consensus 328 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~-- 405 (444)
+++.++.++..|... |+++..+||+..+.++..+.++|+.| .|+|||+++++|+|++..
T Consensus 450 sie~se~Ls~~L~~~-----------------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn 510 (853)
T 2fsf_A 450 SIEKSELVSNELTKA-----------------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGS 510 (853)
T ss_dssp SHHHHHHHHHHHHHT-----------------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCC
T ss_pred cHHHHHHHHHHHHHC-----------------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCc
Confidence 999999999999987 89999999999888888888889888 799999999999999864
Q ss_pred -----------------------------------cEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 406 -----------------------------------KCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 406 -----------------------------------~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
.+||+++.|.|.+.|.||+||+||.|++|.++.|+.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls 581 (853)
T 2fsf_A 511 WQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLS 581 (853)
T ss_dssp HHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred hHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEec
Confidence 599999999999999999999999999999999875
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.2e-39 Score=311.00 Aligned_cols=322 Identities=19% Similarity=0.189 Sum_probs=213.6
Q ss_pred CCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhccc
Q 013392 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~ 120 (444)
.|+++|.++++.++.++++++++|||+|||++++.++... +.++||++|+++|+.||.+++.++ +
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~-~-- 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF-G-- 157 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG-C--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC-C--
Confidence 4999999999999999999999999999999998887764 234999999999999999999984 2
Q ss_pred CceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCC
Q 013392 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (444)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~ 200 (444)
......+.++... ..+|+|+||+.+...+.. ....+++||+||+|++.+..+.. +...+.
T Consensus 158 -~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~----~~~~~~liIvDEaH~~~~~~~~~----~~~~~~-- 217 (472)
T 2fwr_A 158 -EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYVQ----IAQMSI-- 217 (472)
T ss_dssp -GGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH----HTTTCSEEEEETGGGTTSTTTHH----HHHTCC--
T ss_pred -CcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH----hcCCCCEEEEECCcCCCChHHHH----HHHhcC--
Confidence 1214455544332 468999999998876542 12468999999999988766543 333332
Q ss_pred CCCCCCCCCcccccceeEEEEEeecchhhHH--HHHhhcCCCeEEcccCcC-----CCCCcc-cc----------cccCc
Q 013392 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNH--LAKISLETPVLIGLDEKK-----LPEDKS-HV----------RFGSL 262 (444)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~-~~----------~~~~~ 262 (444)
..+++++|||+...... ......+ +......... ...... .+ .+...
T Consensus 218 --------------~~~~l~lSATp~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 282 (472)
T 2fwr_A 218 --------------APFRLGLTATFEREDGRHEILKEVVG-GKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKR 282 (472)
T ss_dssp --------------CSEEEEEESCCCCTTSGGGSHHHHTC-CEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTT
T ss_pred --------------CCeEEEEecCccCCCCHHHHHHHHhC-CeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHH
Confidence 56789999999732110 1111111 1111110000 000000 00 00000
Q ss_pred cccccccccCCC----------ccccc----cCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecc
Q 013392 263 ESDVKEEVEHPS----------TTMRS----TTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFST 328 (444)
Q Consensus 263 ~~~~~~~~~~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~ 328 (444)
.....+...... ..... .................+....|...+..++.. ..+.++||||++
T Consensus 283 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~----~~~~k~lvF~~~ 358 (472)
T 2fwr_A 283 EKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER----HRKDKIIIFTRH 358 (472)
T ss_dssp THHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH----TSSSCBCCBCSC
T ss_pred HHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh----CCCCcEEEEECC
Confidence 000000000000 00000 000000000000111123455677777777776 457899999999
Q ss_pred cchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEE
Q 013392 329 CDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCI 408 (444)
Q Consensus 329 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~v 408 (444)
.+.++.+.+.|. +..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++|
T Consensus 359 ~~~~~~l~~~l~----------------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~V 416 (472)
T 2fwr_A 359 NELVYRISKVFL----------------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVG 416 (472)
T ss_dssp HHHHHHHHHHTT----------------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEE
T ss_pred HHHHHHHHHHhC----------------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEE
Confidence 999999998773 3458999999999999999999999999999999999999999999
Q ss_pred EEccCCCCcchhhhcccccccCCCc-ccccc
Q 013392 409 IQYDSAGEATEYVHRYLKHLPVGNF-YFNIP 438 (444)
Q Consensus 409 i~~~~~~s~~~~~Q~~GR~~R~g~~-g~~~~ 438 (444)
|++++|+|...|.||+||+||.|+. +.++.
T Consensus 417 i~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i 447 (472)
T 2fwr_A 417 VIMSGSGSAREYIQRLGRILRPSKGKKEAVL 447 (472)
T ss_dssp EEECCSSCCHHHHHHHHHSBCCCTTTCCEEE
T ss_pred EEECCCCCHHHHHHHHhhccCCCCCCceEEE
Confidence 9999999999999999999999964 44433
No 43
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=5.4e-38 Score=310.16 Aligned_cols=359 Identities=15% Similarity=0.106 Sum_probs=201.2
Q ss_pred CCCHHHHhHHHhHhc-----CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHH-HHHH
Q 013392 41 APTKVQAQAIPVILS-----GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY-EILH 114 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~-----~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~-~~l~ 114 (444)
.|+++|.++++.++. ++++++++|||+|||++++.++...+...+.......+.++|||+|+++|+.|+. +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 499999999998875 4669999999999999987766665554333222335778999999999999999 7777
Q ss_pred HHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhcc---CccccCCccEEEEechhHhhhcchhHHHH
Q 013392 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT---SSFLHTNLRWIIFDEADRILELGFGKEIE 191 (444)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~---~~~~~~~~~lvV~DE~h~~~~~~~~~~~~ 191 (444)
.+... ...+.++ ....+.+|+|+||++|....... ..+....+++||+||||++.... ...+.
T Consensus 258 ~~~~~-----~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 258 PFGDA-----RHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTCSS-----EEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred hcchh-----hhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 65431 1112111 23345789999999998865421 23345678999999999986532 23445
Q ss_pred HHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCcccccccccc
Q 013392 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVE 271 (444)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (444)
.++..++ ..+.+++||||...........++.+........... ......+............
T Consensus 324 ~il~~~~----------------~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~-~~~l~~~~~~~~~~~~~~~ 386 (590)
T 3h1t_A 324 EILEYFE----------------PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGID-DGFLAPYRVHRVISEVDAA 386 (590)
T ss_dssp HHHHHST----------------TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHH-HTSSCCEEEEEEEETTCC-
T ss_pred HHHHhCC----------------cceEEEeccccccccchhHHHHcCCceEecCHHHHhh-CCccCCcEEEEeeeeeecc
Confidence 5555554 4678999999875433322323333322110000000 0000000000000000000
Q ss_pred CCCccccccCccccccccceeeEEE-------cCCCCcHHHHHHHHHhhcc-cccCceEEEEecccchhhhhhhhhhhcc
Q 013392 272 HPSTTMRSTTEDFKLPAQLVQRYVK-------VPCGSRLAVLLSILKHLFD-TEVSQKLVVFFSTCDAVDFHYSLLSEFQ 343 (444)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~k~~~l~~~l~~~~~-~~~~~~~ivf~~~~~~~~~l~~~l~~~~ 343 (444)
..... ..........+...... +....+...+...+.+++. .....++||||+++.+++.+++.|.+..
T Consensus 387 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~ 463 (590)
T 3h1t_A 387 GWRPS---KGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLN 463 (590)
T ss_dssp -------------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHT
T ss_pred ccccc---cccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhh
Confidence 00000 00000000000000000 0011223333333333222 2445899999999999999999998752
Q ss_pred cCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCc---EEEEecccccCCCCCCCcEEEEccCCCCcchh
Q 013392 344 WSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKA---LLLSTDVAARGLDFPKVKCIIQYDSAGEATEY 420 (444)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~ 420 (444)
.... ...+..+..+||.++. +|.++++.|++|+.+ |||+|+++++|+|+|++++||++++|+|...|
T Consensus 464 ~~~~---------~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~ 533 (590)
T 3h1t_A 464 SDLS---------RKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEF 533 (590)
T ss_dssp HHHH---------TTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHH
T ss_pred hhhh---------ccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHH
Confidence 1000 0002236778888754 799999999998766 88999999999999999999999999999999
Q ss_pred hhcccccccCCCc-ccccceEEee
Q 013392 421 VHRYLKHLPVGNF-YFNIPLIVCF 443 (444)
Q Consensus 421 ~Q~~GR~~R~g~~-g~~~~~i~~~ 443 (444)
+||+||++|.|.. |+..++|+.|
T Consensus 534 ~Q~iGR~~R~~~~~~k~~~~I~D~ 557 (590)
T 3h1t_A 534 KQIVGRGTRLREDYGKLWFNIIDY 557 (590)
T ss_dssp HHHHTTSCCCBGGGTBSCEEEEEC
T ss_pred HHHHhhhcccCccCCCCEEEEEec
Confidence 9999999998864 7777777776
No 44
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4.9e-37 Score=307.49 Aligned_cols=348 Identities=15% Similarity=0.136 Sum_probs=234.5
Q ss_pred hccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHh-cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCC
Q 013392 13 EIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS 91 (444)
Q Consensus 13 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~-~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~ 91 (444)
+.....+|+++++++.+.+.+.++ + ..|.+.|++++..++ .+++++++||||+|||...-..++..... .+
T Consensus 67 ~~~~~~~f~~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~------~~ 138 (773)
T 2xau_A 67 EDGKINPFTGREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMP------HL 138 (773)
T ss_dssp HHSSBCTTTCSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCG------GG
T ss_pred ccCCCCCccccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccc------cC
Confidence 345567899999999999999666 6 458889988887766 56789999999999998322222221111 01
Q ss_pred CCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCcc
Q 013392 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLR 171 (444)
Q Consensus 92 ~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~ 171 (444)
.+.++++++|+++|+.|+.+.+.+..........+....... ....+.+|+++||+.+.+.+... ..+.+++
T Consensus 139 ~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~ 210 (773)
T 2xau_A 139 ENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED--HDLSRYS 210 (773)
T ss_dssp GTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS--TTCTTEE
T ss_pred CCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC--ccccCCC
Confidence 255799999999999999988766543211111111100000 11245789999999999877642 3467999
Q ss_pred EEEEechhH-hhhcc-hhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcC
Q 013392 172 WIIFDEADR-ILELG-FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKK 249 (444)
Q Consensus 172 lvV~DE~h~-~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (444)
+||+||+|. .++.. ....+..+.... . ..+++++|||++. ..+...+ ..+..+.+....
T Consensus 211 ~lIlDEah~R~ld~d~~~~~l~~l~~~~-~---------------~~~iIl~SAT~~~--~~l~~~~-~~~~vi~v~gr~ 271 (773)
T 2xau_A 211 CIILDEAHERTLATDILMGLLKQVVKRR-P---------------DLKIIIMSATLDA--EKFQRYF-NDAPLLAVPGRT 271 (773)
T ss_dssp EEEECSGGGCCHHHHHHHHHHHHHHHHC-T---------------TCEEEEEESCSCC--HHHHHHT-TSCCEEECCCCC
T ss_pred EEEecCccccccchHHHHHHHHHHHHhC-C---------------CceEEEEeccccH--HHHHHHh-cCCCcccccCcc
Confidence 999999995 44322 223333333322 2 6799999999954 3444433 333333222111
Q ss_pred CCCCcccccccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEeccc
Q 013392 250 LPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTC 329 (444)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~ 329 (444)
. .+...+...+...........+........++++||||+++
T Consensus 272 ~--------------------------------------pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~ 313 (773)
T 2xau_A 272 Y--------------------------------------PVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGE 313 (773)
T ss_dssp C--------------------------------------CEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCH
T ss_pred c--------------------------------------ceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCH
Confidence 0 01122222223333333333333332234578999999999
Q ss_pred chhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhh-----cCCCcEEEEecccccCCCCCC
Q 013392 330 DAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFK-----TEKKALLLSTDVAARGLDFPK 404 (444)
Q Consensus 330 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~-----~g~~~iLi~t~~~~~G~di~~ 404 (444)
+.++.+++.|.+.... ........++.+..+||+++.++|.++++.|. +|..+|||||+++++|+|+|+
T Consensus 314 ~~i~~l~~~L~~~~~~------l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~ 387 (773)
T 2xau_A 314 DEIEDAVRKISLEGDQ------LVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDG 387 (773)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTT
T ss_pred HHHHHHHHHHHHHHHh------hcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCC
Confidence 9999999998752100 00000113778999999999999999999999 999999999999999999999
Q ss_pred CcEEEEccC------------------CCCcchhhhcccccccCCCcccccceE
Q 013392 405 VKCIIQYDS------------------AGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 405 ~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
+++||+++. |.|...|.||+||+||. ++|.|+.+.
T Consensus 388 v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~ 440 (773)
T 2xau_A 388 IVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLY 440 (773)
T ss_dssp EEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESS
T ss_pred eEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEe
Confidence 999999887 88999999999999998 888887664
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=6.3e-38 Score=298.00 Aligned_cols=285 Identities=14% Similarity=0.111 Sum_probs=201.5
Q ss_pred CCCCCCHHHHhHHHhHhcCCcE-EEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 38 GFEAPTKVQAQAIPVILSGRHV-LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~-il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
|+..+++.|. +++.+++++++ ++++|||+|||++++++++..... .+.++||++|+++|+.|+.+.+...
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcCc
Confidence 6778999985 78999988877 999999999999989998877654 2467999999999999999887522
Q ss_pred hcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHH
Q 013392 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196 (444)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~ 196 (444)
... ........ ....+..|.++|++.+.+.+... ..+.++++||+||+|++ +..+......+...
T Consensus 72 -------~v~-~~~~~~~~----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 72 -------PIR-YQTPAVKS----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp -------CEE-ECCTTCSC----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred -------eee-eeeccccc----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 111 11111100 12344579999999998877642 44678999999999976 33222222222222
Q ss_pred hcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCcc
Q 013392 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTT 276 (444)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (444)
.... ..|++++|||++.....+ ....+..+.... ..
T Consensus 137 ~~~~--------------~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~-~~-------------------------- 172 (451)
T 2jlq_A 137 VEMG--------------EAAAIFMTATPPGSTDPF---PQSNSPIEDIER-EI-------------------------- 172 (451)
T ss_dssp HHTT--------------SCEEEEECSSCTTCCCSS---CCCSSCEEEEEC-CC--------------------------
T ss_pred hcCC--------------CceEEEEccCCCccchhh---hcCCCceEecCc-cC--------------------------
Confidence 2111 789999999987632211 111111111100 00
Q ss_pred ccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHH
Q 013392 277 MRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQ 356 (444)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 356 (444)
+. ..+ ... ...+.+ ..+++||||++++.++.+++.|.+.
T Consensus 173 ----------p~---~~~-----~~~----~~~l~~-----~~~~~lVF~~s~~~a~~l~~~L~~~-------------- 211 (451)
T 2jlq_A 173 ----------PE---RSW-----NTG----FDWITD-----YQGKTVWFVPSIKAGNDIANCLRKS-------------- 211 (451)
T ss_dssp ----------CS---SCC-----SSS----CHHHHH-----CCSCEEEECSSHHHHHHHHHHHHTT--------------
T ss_pred ----------Cc---hhh-----HHH----HHHHHh-----CCCCEEEEcCCHHHHHHHHHHHHHc--------------
Confidence 00 000 001 112222 2469999999999999999999886
Q ss_pred hhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEcc--------------------CCCC
Q 013392 357 LFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD--------------------SAGE 416 (444)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~--------------------~~~s 416 (444)
++.+..+|+++. .++++.|++|+.+|||||+++++|+|+|+ ++||+++ .|.+
T Consensus 212 ---g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s 283 (451)
T 2jlq_A 212 ---GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVT 283 (451)
T ss_dssp ---TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECC
T ss_pred ---CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCC
Confidence 788889998653 57899999999999999999999999999 9999998 9999
Q ss_pred cchhhhcccccccCCC-cccccce
Q 013392 417 ATEYVHRYLKHLPVGN-FYFNIPL 439 (444)
Q Consensus 417 ~~~~~Q~~GR~~R~g~-~g~~~~~ 439 (444)
..+|+||+||+||.|+ +|.++.+
T Consensus 284 ~~~y~Qr~GRaGR~g~~~g~~~~~ 307 (451)
T 2jlq_A 284 PASAAQRRGRIGRNPAQEDDQYVF 307 (451)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred HHHHHHhccccCCCCCCCccEEEE
Confidence 9999999999999998 7777654
No 46
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=7.4e-38 Score=305.88 Aligned_cols=300 Identities=13% Similarity=0.081 Sum_probs=210.8
Q ss_pred cCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 23 LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 23 ~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
+++++.+.+.+. . ....+.|.|+.+++.+++++++++.+|||+|||+++++++++.+.. .+.++||++|+
T Consensus 155 l~~~~~~~~~l~-~-~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLvl~Pt 224 (618)
T 2whx_A 155 VTKSGDYVSAIT-Q-AERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLILAPT 224 (618)
T ss_dssp -------CEECB-C-CCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESS
T ss_pred ccchHHHHHHHh-h-ccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEcCh
Confidence 556666555552 2 1356888887789999999999999999999999999999888765 24679999999
Q ss_pred HHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhh
Q 013392 103 RELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 103 ~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~ 182 (444)
++|+.|+.+.+... ... ....... .....+..+.++|.+.+...+... ..++++++||+||||++
T Consensus 225 reLa~Qi~~~l~~~-------~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~- 289 (618)
T 2whx_A 225 RVVAAEMEEALRGL-------PIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT- 289 (618)
T ss_dssp HHHHHHHHHHTTTS-------CEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC-
T ss_pred HHHHHHHHHHhcCC-------cee-Eecccce----eccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC-
Confidence 99999999887632 111 1111100 011233467788888887766542 34578999999999986
Q ss_pred hcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCc
Q 013392 183 ELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSL 262 (444)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (444)
+..+...+..+...++.. ..|++++|||++.....+.. .++..+.+...
T Consensus 290 ~~~~~~~~~~i~~~l~~~--------------~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------- 338 (618)
T 2whx_A 290 DPCSVAARGYISTRVEMG--------------EAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------- 338 (618)
T ss_dssp SHHHHHHHHHHHHHHHHT--------------SCEEEEECSSCTTCCCSSCC---CSSCEEEEECC--------------
T ss_pred CccHHHHHHHHHHHhccc--------------CccEEEEECCCchhhhhhhc---cCCceeeeccc--------------
Confidence 555666666666665421 78999999998765321111 11111111000
Q ss_pred cccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhc
Q 013392 263 ESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEF 342 (444)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~ 342 (444)
.+. .+...+...+.+ .+.++||||++++.++.+++.|.+.
T Consensus 339 ----------------------------------~~~-~~~~~ll~~l~~-----~~~~~LVF~~s~~~a~~l~~~L~~~ 378 (618)
T 2whx_A 339 ----------------------------------IPE-RSWNTGFDWITD-----YQGKTVWFVPSIKAGNDIANCLRKS 378 (618)
T ss_dssp ----------------------------------CCS-SCCSSSCHHHHH-----CCSCEEEECSSHHHHHHHHHHHHHT
T ss_pred ----------------------------------CCH-HHHHHHHHHHHh-----CCCCEEEEECChhHHHHHHHHHHHc
Confidence 000 000011122222 2569999999999999999999987
Q ss_pred ccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEE--------------
Q 013392 343 QWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCI-------------- 408 (444)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~v-------------- 408 (444)
+..+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 379 -----------------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~ 436 (618)
T 2whx_A 379 -----------------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTD 436 (618)
T ss_dssp -----------------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECS
T ss_pred -----------------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceeccc
Confidence 7889999984 688899999999999999999999999997 8888
Q ss_pred ------EEccCCCCcchhhhcccccccCCC-cccccceE
Q 013392 409 ------IQYDSAGEATEYVHRYLKHLPVGN-FYFNIPLI 440 (444)
Q Consensus 409 ------i~~~~~~s~~~~~Q~~GR~~R~g~-~g~~~~~i 440 (444)
++++.|.+..+|+||+||+||.|. +|.++.|+
T Consensus 437 ~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~ 475 (618)
T 2whx_A 437 GPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 475 (618)
T ss_dssp SSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred CCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEc
Confidence 666778999999999999999965 88888775
No 47
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.7e-36 Score=310.19 Aligned_cols=353 Identities=15% Similarity=0.130 Sum_probs=223.3
Q ss_pred CCCHHHHhHHHhHhcC--CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 41 APTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~--~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
.|+|||.+++..++.+ .+++++++||+|||++++.++...... +...++|||||+ +|+.||..++.++++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-------g~~~rvLIVvP~-sLl~Qw~~E~~~~f~ 224 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-------GAAERVLIIVPE-TLQHQWLVEMLRRFN 224 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-------SSCCCEEEECCT-TTHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEeCH-HHHHHHHHHHHHHhC
Confidence 4999999999988854 478999999999999998877776655 344579999999 999999999987763
Q ss_pred ccCceeeEEEeCCcchhHHHH---HhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchh-HHHHHHH
Q 013392 119 RFHWIVPGYVMGGENRSKEKA---RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG-KEIEEIL 194 (444)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~-~~~~~~~ 194 (444)
.....+ .+........ ......+|+|+|++.+.........+....+++||+||+|++...... ......+
T Consensus 225 ----l~v~v~-~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l 299 (968)
T 3dmq_A 225 ----LRFALF-DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAI 299 (968)
T ss_dssp ----CCCEEC-CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHH
T ss_pred ----CCEEEE-ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHH
Confidence 222222 2222221111 112347899999998865322222234458999999999998654322 1112233
Q ss_pred HHhcCCCCCCCCCCCcccccceeEEEEEeecch-hhHH-HHHhhcCCCeEEcc---------------------------
Q 013392 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVNH-LAKISLETPVLIGL--------------------------- 245 (444)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~-~~~~-~~~~~~~~~~~~~~--------------------------- 245 (444)
..+... ...++++||||.. .... +....+-.|..+..
T Consensus 300 ~~L~~~--------------~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~ 365 (968)
T 3dmq_A 300 EQLAEH--------------VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKL 365 (968)
T ss_dssp HHHHTT--------------CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCC
T ss_pred HHHhhc--------------CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence 333221 4568999999843 1111 11100000000000
Q ss_pred cCcCCCCCccccc---ccCcccccc--------------cc-cc----CCCccccccCccccc-----------------
Q 013392 246 DEKKLPEDKSHVR---FGSLESDVK--------------EE-VE----HPSTTMRSTTEDFKL----------------- 286 (444)
Q Consensus 246 ~~~~~~~~~~~~~---~~~~~~~~~--------------~~-~~----~~~~~~~~~~~~~~~----------------- 286 (444)
...........+. +........ .. .. ...........-...
T Consensus 366 ~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~ 445 (968)
T 3dmq_A 366 SNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQ 445 (968)
T ss_dssp CGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHH
T ss_pred CHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHH
Confidence 0000000000000 000000000 00 00 000000000000000
Q ss_pred ------------------------ccccee-----eEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhh
Q 013392 287 ------------------------PAQLVQ-----RYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (444)
Q Consensus 287 ------------------------~~~~~~-----~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~ 337 (444)
+..+.. ....+....|...+..++.. ..+.++||||+++..++.+.+
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~----~~~~k~iVF~~~~~~~~~l~~ 521 (968)
T 3dmq_A 446 TAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS----HRSQKVLVICAKAATALQLEQ 521 (968)
T ss_dssp HHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH----TSSSCCCEECSSTHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh----CCCCCEEEEeCcHHHHHHHHH
Confidence 000000 01123445678888888776 467899999999999999999
Q ss_pred hhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCC--CcEEEEecccccCCCCCCCcEEEEccCCC
Q 013392 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK--KALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (444)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~iLi~t~~~~~G~di~~~~~vi~~~~~~ 415 (444)
.|.... |+++..+||+++..+|.++++.|++|+ .+|||||+++++|+|+|++++||++++|+
T Consensus 522 ~L~~~~----------------g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~ 585 (968)
T 3dmq_A 522 VLRERE----------------GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPF 585 (968)
T ss_dssp HHHTTT----------------CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCS
T ss_pred HHHHHc----------------CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCC
Confidence 998531 889999999999999999999999998 99999999999999999999999999999
Q ss_pred CcchhhhcccccccCCCcccccceE
Q 013392 416 EATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 416 s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
++..|.|++||+||.|+.|.++.+.
T Consensus 586 ~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 586 NPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp SHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred CHHHHHHHhhccccCCCCceEEEEE
Confidence 9999999999999999999765554
No 48
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.1e-35 Score=286.48 Aligned_cols=341 Identities=16% Similarity=0.199 Sum_probs=214.1
Q ss_pred CCCHHHHhHHHhHh----cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.|+|||.++++++. .++++++.++||+|||++++..+...... ....++|||||+ +|+.||.+++.++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-------~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-------NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-------TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 49999999998774 57899999999999999987666554433 334569999995 7999999999998
Q ss_pred hcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHH
Q 013392 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196 (444)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~ 196 (444)
.... ....+.++... ....+.+|+|+||+++..... +....+++||+||+|++.+... .....+..
T Consensus 109 ~~~~---~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~ 174 (500)
T 1z63_A 109 APHL---RFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKE 174 (500)
T ss_dssp CTTS---CEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTS--HHHHHHHT
T ss_pred CCCc---eEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhH--HHHHHHHh
Confidence 7532 23333333211 122356899999999865332 2234789999999999865432 22333333
Q ss_pred hcCCCCCCCCCCCcccccceeEEEEEeecch-hhHHHHHh---hcC--------------------------------CC
Q 013392 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVNHLAKI---SLE--------------------------------TP 240 (444)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~-~~~~~~~~---~~~--------------------------------~~ 240 (444)
+. ....+++||||.. ...++... ... .+
T Consensus 175 l~----------------~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~ 238 (500)
T 1z63_A 175 LK----------------SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISP 238 (500)
T ss_dssp SC----------------EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTT
T ss_pred hc----------------cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhh
Confidence 32 5677999999843 22222111 000 11
Q ss_pred eEEcccCc------CCCCCcccccccCccc---ccccc-----ccCCCcccccc-----------Ccc-ccccccceeeE
Q 013392 241 VLIGLDEK------KLPEDKSHVRFGSLES---DVKEE-----VEHPSTTMRST-----------TED-FKLPAQLVQRY 294 (444)
Q Consensus 241 ~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~-----------~~~-~~~~~~~~~~~ 294 (444)
..++-... .+|.......+..+.. ...+. ........... ... ...+..+....
T Consensus 239 ~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~ 318 (500)
T 1z63_A 239 FILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE 318 (500)
T ss_dssp TEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSC
T ss_pred HeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCcc
Confidence 11110000 0111000000000000 00000 00000000000 000 00000000000
Q ss_pred EEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHH
Q 013392 295 VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQED 374 (444)
Q Consensus 295 ~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (444)
.....+.|...+.+++.+.. ..+.++||||++...++.+.+.|.... +..+..+||+++..+
T Consensus 319 ~~~~~s~K~~~l~~~l~~~~--~~~~k~lvF~~~~~~~~~l~~~l~~~~----------------~~~~~~~~g~~~~~~ 380 (500)
T 1z63_A 319 QSVRRSGKMIRTMEIIEEAL--DEGDKIAIFTQFVDMGKIIRNIIEKEL----------------NTEVPFLYGELSKKE 380 (500)
T ss_dssp CCSTTCHHHHHHHHHHHHHH--TTTCCEEEECSCHHHHHHHHHHHHHHH----------------TCCCCEEETTSCHHH
T ss_pred chhhcchhHHHHHHHHHHHH--ccCCcEEEEEehHHHHHHHHHHHHHhh----------------CCCeEEEECCCCHHH
Confidence 11234568888888887764 457899999999999999999997631 678899999999999
Q ss_pred HHHHHHHhhcC-CCc-EEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCccccc
Q 013392 375 RRTTFGAFKTE-KKA-LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNI 437 (444)
Q Consensus 375 r~~~~~~f~~g-~~~-iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~ 437 (444)
|.++++.|++| ..+ +|++|+++++|+|+|.++.||++++|+|+..|.|++||++|.|+++.+.
T Consensus 381 R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~ 445 (500)
T 1z63_A 381 RDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVI 445 (500)
T ss_dssp HHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEE
T ss_pred HHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeE
Confidence 99999999998 454 7899999999999999999999999999999999999999999988663
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=4.3e-36 Score=290.33 Aligned_cols=281 Identities=16% Similarity=0.138 Sum_probs=202.3
Q ss_pred HHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHH
Q 013392 33 LRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (444)
Q Consensus 33 l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 112 (444)
+.++.++ .++.+|.++++.+.+++++++++|||+|||.++.+++++ ++.++||++|+++|+.|+++.
T Consensus 210 l~~r~~l-P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------------~g~~vLVl~PTReLA~Qia~~ 276 (666)
T 3o8b_A 210 METTMRS-PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------------QGYKVLVLNPSVAATLGFGAY 276 (666)
T ss_dssp HHHHHHS-CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------------TTCCEEEEESCHHHHHHHHHH
T ss_pred hhhhccC-CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------------CCCeEEEEcchHHHHHHHHHH
Confidence 4344345 377888888888888999999999999999988887765 134699999999999999998
Q ss_pred HHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHH
Q 013392 113 LHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEE 192 (444)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~ 192 (444)
+.+.+.. ......++.. ...+.+|+|+||++|+ .. ..+.++++++||+||+| +.+.++...+..
T Consensus 277 l~~~~g~----~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~ 340 (666)
T 3o8b_A 277 MSKAHGI----DPNIRTGVRT-------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECH-STDSTTILGIGT 340 (666)
T ss_dssp HHHHHSC----CCEEECSSCE-------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTT-CCSHHHHHHHHH
T ss_pred HHHHhCC----CeeEEECcEe-------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccch-hcCccHHHHHHH
Confidence 8776542 2233333322 3456899999999984 33 55667789999999998 456667777788
Q ss_pred HHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccC
Q 013392 193 ILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEH 272 (444)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (444)
+++.++... ...++++|||++.... ...+....+....
T Consensus 341 Il~~l~~~~-------------~~llil~SAT~~~~i~------~~~p~i~~v~~~~----------------------- 378 (666)
T 3o8b_A 341 VLDQAETAG-------------ARLVVLATATPPGSVT------VPHPNIEEVALSN----------------------- 378 (666)
T ss_dssp HHHHTTTTT-------------CSEEEEEESSCTTCCC------CCCTTEEEEECBS-----------------------
T ss_pred HHHhhhhcC-------------CceEEEECCCCCcccc------cCCcceEEEeecc-----------------------
Confidence 888876521 3347778999886311 0000000000000
Q ss_pred CCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchH
Q 013392 273 PSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDM 352 (444)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~ 352 (444)
...+ ........ + ....+.++||||++++.++.+++.|++.
T Consensus 379 --------------~~~i----~~~~~~~~-------l----~~~~~~~vLVFv~Tr~~ae~la~~L~~~---------- 419 (666)
T 3o8b_A 379 --------------TGEI----PFYGKAIP-------I----EAIRGGRHLIFCHSKKKCDELAAKLSGL---------- 419 (666)
T ss_dssp --------------CSSE----EETTEEEC-------G----GGSSSSEEEEECSCHHHHHHHHHHHHTT----------
T ss_pred --------------cchh----HHHHhhhh-------h----hhccCCcEEEEeCCHHHHHHHHHHHHhC----------
Confidence 0000 00000000 0 0134679999999999999999999886
Q ss_pred HHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEE----------Ecc----------
Q 013392 353 ELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCII----------QYD---------- 412 (444)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi----------~~~---------- 412 (444)
++.+..+||++++++ |.++..+|||||+++++|+|+| ++.|| +|+
T Consensus 420 -------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~ 484 (666)
T 3o8b_A 420 -------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETT 484 (666)
T ss_dssp -------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEE
T ss_pred -------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccc
Confidence 889999999998874 4556679999999999999997 99988 555
Q ss_pred -CCCCcchhhhcccccccCCCcccccceE
Q 013392 413 -SAGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 413 -~~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
.|.+..+|+||+||+|| |++|. +.|+
T Consensus 485 ~~P~s~~syiQRiGRtGR-g~~G~-i~lv 511 (666)
T 3o8b_A 485 TVPQDAVSRSQRRGRTGR-GRRGI-YRFV 511 (666)
T ss_dssp EEECBHHHHHHHHTTBCS-SSCEE-EEES
T ss_pred cCcCCHHHHHHHhccCCC-CCCCE-EEEE
Confidence 78999999999999999 99998 6554
No 50
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.7e-36 Score=298.05 Aligned_cols=284 Identities=15% Similarity=0.134 Sum_probs=194.4
Q ss_pred CCCHHHH-----hHHHhHh------cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHH
Q 013392 41 APTKVQA-----QAIPVIL------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (444)
Q Consensus 41 ~~~~~Q~-----~~~~~~~------~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 109 (444)
.|+++|+ ++++.++ +++++++++|||+|||++|++++++.+.. .+.++||++|+++|+.|+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~lilaPTr~La~Q~ 286 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRTAVLAPTRVVAAEM 286 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHH
Confidence 7999999 9998888 89999999999999999999999887654 346799999999999999
Q ss_pred HHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHH
Q 013392 110 YEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189 (444)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~ 189 (444)
.+.+..+.- . ...+. .. .....+.-+-+.+...+...+.. ...+.++++||+||+|++ +..+...
T Consensus 287 ~~~l~~~~i-------~-~~~~~-l~---~v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH~~-~~~~~~~ 351 (673)
T 2wv9_A 287 AEALRGLPV-------R-YLTPA-VQ---REHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAHFT-DPASIAA 351 (673)
T ss_dssp HHHTTTSCC-------E-ECCC-------CCCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTTCC-CHHHHHH
T ss_pred HHHHhcCCe-------e-eeccc-cc---ccCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCccc-CccHHHH
Confidence 988875411 0 10000 00 00111123444555555544443 244678999999999987 2212222
Q ss_pred HHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCcccccccc
Q 013392 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEE 269 (444)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (444)
...+...+... ..|++++|||++.....+.. ....+.
T Consensus 352 ~~~l~~~~~~~--------------~~~vl~~SAT~~~~i~~~~~------------------~~~~i~----------- 388 (673)
T 2wv9_A 352 RGYIATRVEAG--------------EAAAIFMTATPPGTSDPFPD------------------TNSPVH----------- 388 (673)
T ss_dssp HHHHHHHHHTT--------------SCEEEEECSSCTTCCCSSCC------------------CSSCEE-----------
T ss_pred HHHHHHhcccc--------------CCcEEEEcCCCChhhhhhcc------------------cCCceE-----------
Confidence 22222222211 78999999998754211100 000000
Q ss_pred ccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCC
Q 013392 270 VEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQ 349 (444)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~ 349 (444)
......+...... +...+. ..+.++||||++++.++.+++.|++.
T Consensus 389 ----------------------~v~~~~~~~~~~~-~l~~l~-----~~~~~~lVF~~s~~~~e~la~~L~~~------- 433 (673)
T 2wv9_A 389 ----------------------DVSSEIPDRAWSS-GFEWIT-----DYAGKTVWFVASVKMSNEIAQCLQRA------- 433 (673)
T ss_dssp ----------------------EEECCCCSSCCSS-CCHHHH-----SCCSCEEEECSSHHHHHHHHHHHHTT-------
T ss_pred ----------------------EEeeecCHHHHHH-HHHHHH-----hCCCCEEEEECCHHHHHHHHHHHHhC-------
Confidence 0000000000000 111122 23679999999999999999999886
Q ss_pred chHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEE-------------------
Q 013392 350 PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ------------------- 410 (444)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~------------------- 410 (444)
++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 434 ----------g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~l 498 (673)
T 2wv9_A 434 ----------GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVIL 498 (673)
T ss_dssp ----------TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEE
T ss_pred ----------CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeeccccccee
Confidence 7889999993 788999999999999999999999999999 999998
Q ss_pred -ccCCCCcchhhhcccccccC-CCcccccceE
Q 013392 411 -YDSAGEATEYVHRYLKHLPV-GNFYFNIPLI 440 (444)
Q Consensus 411 -~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~i 440 (444)
++.|.+..+|+||+||+||. |+.|.+++|+
T Consensus 499 l~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 499 SVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp CCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred cccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 56888999999999999998 7899998885
No 51
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.4e-36 Score=285.70 Aligned_cols=264 Identities=15% Similarity=0.106 Sum_probs=176.7
Q ss_pred hHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCC
Q 013392 52 VILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGG 131 (444)
Q Consensus 52 ~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~ 131 (444)
.+++++++++++|||+|||+++++++++.+.. ++.+++|++|+++|+.|+.+.+..+.- . ...+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~~v-------~-~~~~ 67 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGLDV-------K-FHTQ 67 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTSCE-------E-EESS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcCCe-------E-Eecc
Confidence 45689999999999999999999999887755 246799999999999999998875311 1 1111
Q ss_pred cchhHHHHHhcCCCcEEEeCchHHH---------HHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCC
Q 013392 132 ENRSKEKARLRKGISILVATPGRLL---------DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNI 202 (444)
Q Consensus 132 ~~~~~~~~~~~~~~~iii~T~~~l~---------~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~ 202 (444)
.. -.++||+.+. ..+. ....+.++++||+||+|++ +..+......+.......
T Consensus 68 ~~-------------~~v~Tp~~l~~~l~~~~l~~~~~--~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~-- 129 (440)
T 1yks_A 68 AF-------------SAHGSGREVIDAMCHATLTYRML--EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARAN-- 129 (440)
T ss_dssp CC-------------CCCCCSSCCEEEEEHHHHHHHHT--SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTT--
T ss_pred cc-------------eeccCCccceeeecccchhHhhh--CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccC--
Confidence 00 0255654433 2222 2234678999999999987 333332222222222211
Q ss_pred CCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCc
Q 013392 203 GSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTE 282 (444)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (444)
..|++++|||+++....+... ....
T Consensus 130 ------------~~~~l~~SAT~~~~~~~~~~~---~~~~---------------------------------------- 154 (440)
T 1yks_A 130 ------------ESATILMTATPPGTSDEFPHS---NGEI---------------------------------------- 154 (440)
T ss_dssp ------------SCEEEEECSSCTTCCCSSCCC---SSCE----------------------------------------
T ss_pred ------------CceEEEEeCCCCchhhhhhhc---CCCe----------------------------------------
Confidence 789999999987643211110 0000
Q ss_pred cccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccc
Q 013392 283 DFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCK 362 (444)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 362 (444)
......++...... +...+.+ .+.+++|||++++.++.+++.|++. +++
T Consensus 155 --------~~~~~~~~~~~~~~-~~~~l~~-----~~~~~lVF~~s~~~a~~l~~~L~~~-----------------~~~ 203 (440)
T 1yks_A 155 --------EDVQTDIPSEPWNT-GHDWILA-----DKRPTAWFLPSIRAANVMAASLRKA-----------------GKS 203 (440)
T ss_dssp --------EEEECCCCSSCCSS-SCHHHHH-----CCSCEEEECSCHHHHHHHHHHHHHT-----------------TCC
T ss_pred --------eEeeeccChHHHHH-HHHHHHh-----cCCCEEEEeCCHHHHHHHHHHHHHc-----------------CCC
Confidence 00000001111000 1112222 2579999999999999999999886 788
Q ss_pred eEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEE-------------------ccCCCCcchhhhc
Q 013392 363 TFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ-------------------YDSAGEATEYVHR 423 (444)
Q Consensus 363 ~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~-------------------~~~~~s~~~~~Q~ 423 (444)
+..+|| ++|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|+||
T Consensus 204 v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr 278 (440)
T 1yks_A 204 VVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQR 278 (440)
T ss_dssp EEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHH
T ss_pred EEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHh
Confidence 999999 4688899999999999999999999999999 999986 7889999999999
Q ss_pred ccccccC-CCcccccceE
Q 013392 424 YLKHLPV-GNFYFNIPLI 440 (444)
Q Consensus 424 ~GR~~R~-g~~g~~~~~i 440 (444)
+||+||. |++|.|+.++
T Consensus 279 ~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 279 RGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp HTTSSCCTTCCCEEEEEC
T ss_pred ccccCCCCCCCceEEEEe
Confidence 9999997 6899998875
No 52
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.4e-33 Score=240.72 Aligned_cols=204 Identities=35% Similarity=0.522 Sum_probs=178.5
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
.++|+++++++++.+.| ..+||..|+++|.++++.+++++++++.+|||+|||++++++++..+... ..+.++
T Consensus 2 ~~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------~~~~~~ 74 (206)
T 1vec_A 2 GNEFEDYCLKRELLMGI-FEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK------KDNIQA 74 (206)
T ss_dssp CSSGGGSCCCHHHHHHH-HTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT------SCSCCE
T ss_pred CCChhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc------CCCeeE
Confidence 46899999999999999 66799999999999999999999999999999999999999998876431 235679
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
||++|+++|+.|+.+.+.++....+........++............+++|+|+||+++.+.+.. ....+.+++++|+|
T Consensus 75 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViD 153 (206)
T 1vec_A 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLD 153 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEE
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEE
Confidence 99999999999999999999876655666777777777777777778899999999999998876 45567789999999
Q ss_pred chhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEE
Q 013392 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243 (444)
Q Consensus 177 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~ 243 (444)
|+|++.+.++...+..+...++. ..|++++|||++.....+...++.+|..+
T Consensus 154 Eah~~~~~~~~~~l~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 154 EADKLLSQDFVQIMEDIILTLPK---------------NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSCT---------------TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ChHHhHhhCcHHHHHHHHHhCCc---------------cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999988888999999888865 78999999999999999999998888765
No 53
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=9.5e-34 Score=247.53 Aligned_cols=214 Identities=34% Similarity=0.542 Sum_probs=185.4
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCce
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (444)
.-.+|+++++++.+.+.+ ..+||..|+++|.++++.+++++++++++|||+|||++++++++..+...... ....+.+
T Consensus 27 ~~~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~ 104 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVI-ARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL-ERGDGPI 104 (242)
T ss_dssp CCSSTTTTTCCHHHHHHH-HTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC-CTTCCCS
T ss_pred ccCCHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc-ccCCCCE
Confidence 357899999999999999 56799999999999999999999999999999999999999999988653321 2235678
Q ss_pred EEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEE
Q 013392 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (444)
Q Consensus 96 vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~ 175 (444)
+||++|+++|+.|+.+.++++....+ .....+.++.........+..+++|+|+||+++.+.+.. ....+.+++++|+
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lVi 182 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC-GKTNLRRTTYLVL 182 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH-TSCCCTTCCEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcC-ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCCCcccccEEEE
Confidence 99999999999999999999877654 455667778777777777778899999999999998876 5556789999999
Q ss_pred echhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCc
Q 013392 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (444)
Q Consensus 176 DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~ 248 (444)
||+|++.+.++...+..++..++. ..|++++|||+++....+...++.+|..+.+...
T Consensus 183 DEah~l~~~~~~~~~~~i~~~~~~---------------~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 183 DEADRMLDMGFEPQIRKIVDQIRP---------------DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp TTHHHHHHTTCHHHHHHHHTTSCS---------------SCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred eCHHHHhhhCcHHHHHHHHHhCCc---------------cceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999888765 7899999999999999999999999998877654
No 54
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=3e-36 Score=286.88 Aligned_cols=276 Identities=17% Similarity=0.134 Sum_probs=186.0
Q ss_pred HHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEe
Q 013392 50 IPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVM 129 (444)
Q Consensus 50 ~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~ 129 (444)
...+.+++++++++|||+|||+++++++++.+.. .+.++||++|+++|+.|+.+.+..+ . . ....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~----~--v-~~~~ 79 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRGL----P--V-RYQT 79 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTTS----C--E-EECC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcCc----e--E-eEEe
Confidence 3445678899999999999999999999987764 2467999999999999999988622 1 1 1110
Q ss_pred CCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCC
Q 013392 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGN 209 (444)
Q Consensus 130 ~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (444)
+.. ......+..+.++|...+...+.. ...++++++||+||+|+. +.........+......
T Consensus 80 -~~~----~~~~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~-~~~~~~~~~~~~~~~~~---------- 141 (459)
T 2z83_A 80 -SAV----QREHQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFT-DPASIAARGYIATKVEL---------- 141 (459)
T ss_dssp -------------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCC-SHHHHHHHHHHHHHHHT----------
T ss_pred -ccc----ccCCCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccC-CchhhHHHHHHHHHhcc----------
Confidence 000 001123446788898888776664 244678999999999973 11111111111111111
Q ss_pred cccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCcccccccc
Q 013392 210 EVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQ 289 (444)
Q Consensus 210 ~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (444)
...|++++|||++.....+... ..|... ...
T Consensus 142 ----~~~~~il~SAT~~~~~~~~~~~--~~pi~~-~~~------------------------------------------ 172 (459)
T 2z83_A 142 ----GEAAAIFMTATPPGTTDPFPDS--NAPIHD-LQD------------------------------------------ 172 (459)
T ss_dssp ----TSCEEEEECSSCTTCCCSSCCC--SSCEEE-EEC------------------------------------------
T ss_pred ----CCccEEEEEcCCCcchhhhccC--CCCeEE-ecc------------------------------------------
Confidence 1789999999987542111100 001100 000
Q ss_pred ceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecC
Q 013392 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN 369 (444)
Q Consensus 290 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (444)
..+. .+...+...+.+ .++++||||++++.++.+++.|+.. ++.+..+|++
T Consensus 173 ------~~~~-~~~~~~~~~l~~-----~~~~~LVF~~s~~~~~~l~~~L~~~-----------------g~~v~~lh~~ 223 (459)
T 2z83_A 173 ------EIPD-RAWSSGYEWITE-----YAGKTVWFVASVKMGNEIAMCLQRA-----------------GKKVIQLNRK 223 (459)
T ss_dssp ------CCCS-SCCSSCCHHHHH-----CCSCEEEECSCHHHHHHHHHHHHHT-----------------TCCEEEESTT
T ss_pred ------cCCc-chhHHHHHHHHh-----cCCCEEEEeCChHHHHHHHHHHHhc-----------------CCcEEecCHH
Confidence 0000 000001122322 2579999999999999999999887 7889999984
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEE--------------------ccCCCCcchhhhccccccc
Q 013392 370 MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ--------------------YDSAGEATEYVHRYLKHLP 429 (444)
Q Consensus 370 ~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~--------------------~~~~~s~~~~~Q~~GR~~R 429 (444)
+|.++++.|++|+.+|||||+++++|+|+|+ +.||+ |+.|.|..+|+||+||+||
T Consensus 224 ----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR 298 (459)
T 2z83_A 224 ----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGR 298 (459)
T ss_dssp ----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSC
T ss_pred ----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCC
Confidence 6778899999999999999999999999999 99998 6699999999999999999
Q ss_pred CCC-cccccceEE
Q 013392 430 VGN-FYFNIPLIV 441 (444)
Q Consensus 430 ~g~-~g~~~~~i~ 441 (444)
.|+ +|.+++++.
T Consensus 299 ~g~~~G~~~~~~~ 311 (459)
T 2z83_A 299 NPNQVGDEYHYGG 311 (459)
T ss_dssp CTTCCCEEEEECS
T ss_pred CCCCCCeEEEEEc
Confidence 997 899988763
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=245.50 Aligned_cols=208 Identities=38% Similarity=0.667 Sum_probs=181.5
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCc
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (444)
....+|+++++++.+.+.| +.+||..|+++|.++++.+++++++++.+|||+|||++++++++..+... ..+.
T Consensus 40 ~~~~~f~~l~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------~~~~ 112 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEAC-DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET------PQRL 112 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CCSS
T ss_pred cccCCHHHcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC------CCCc
Confidence 4457899999999999999 67799999999999999999999999999999999999999999887652 2356
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEE
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV 174 (444)
++||++|+++|+.|+.+.++++....+ .....+.++.........+..+++|+|+||+++.+.+...+.+.+..+++||
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lV 191 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLV 191 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccCC-eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEE
Confidence 799999999999999999999877654 4456667777776677777788999999999999988865566678999999
Q ss_pred EechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcc
Q 013392 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245 (444)
Q Consensus 175 ~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~ 245 (444)
+||+|++.+.++...+..++..++. ..|++++|||++.....+...++.+|..+.+
T Consensus 192 iDEah~l~~~~~~~~l~~i~~~~~~---------------~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 192 MDEADRILNMDFETEVDKILKVIPR---------------DRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHSSCS---------------SSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EcChhhhhccChHHHHHHHHHhCCC---------------CCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999998899999999887765 7899999999999999999999999988754
No 56
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=3.9e-33 Score=238.21 Aligned_cols=205 Identities=38% Similarity=0.563 Sum_probs=176.5
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEE
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vl 97 (444)
++|+++++++++.+.+ ..+|+..|+++|.++++.+++++++++.+|||+|||++++++++..+..... ...+.++|
T Consensus 1 ~~f~~~~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~---~~~~~~~l 76 (207)
T 2gxq_A 1 MEFKDFPLKPEILEAL-HGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE---RGRKPRAL 76 (207)
T ss_dssp CCGGGSCCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC---TTCCCSEE
T ss_pred CChhhcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc---cCCCCcEE
Confidence 4799999999999999 5679999999999999999999999999999999999999999988754221 13467899
Q ss_pred EEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEec
Q 013392 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (444)
Q Consensus 98 il~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE 177 (444)
|++|+++|+.|+.++++++... .......++.........+..+++|+|+||+++.+.+.. ....+.++++||+||
T Consensus 77 il~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 77 VLTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDE 152 (207)
T ss_dssp EECSSHHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEES
T ss_pred EEECCHHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEC
Confidence 9999999999999999998754 345566777776666667777899999999999998876 556678899999999
Q ss_pred hhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcc
Q 013392 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245 (444)
Q Consensus 178 ~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~ 245 (444)
+|++.+.++...+..++..++. ..|++++|||+++....+...++.+|..+.+
T Consensus 153 ah~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 153 ADEMLSMGFEEEVEALLSATPP---------------SRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCT---------------TSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhHhhccchHHHHHHHHHhCCc---------------cCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9999988888888888887765 7899999999999999999999999988754
No 57
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=243.48 Aligned_cols=211 Identities=35% Similarity=0.528 Sum_probs=172.4
Q ss_pred cccCCccc-cCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCC
Q 013392 15 FASCSFSS-LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 93 (444)
Q Consensus 15 ~~~~~~~~-~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~ 93 (444)
.-..+|++ +++++.+.+.+ ..+||..|+++|.++++.+++++++++++|||+|||++++++++..+...........+
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~ 94 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSI-IRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNG 94 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHH-HHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CC
T ss_pred CChhhHhhhhccCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCC
Confidence 34567888 79999999999 55699999999999999999999999999999999999999999887654333333467
Q ss_pred ceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEE
Q 013392 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (444)
Q Consensus 94 ~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lv 173 (444)
.++||++|+++|+.|+.+++.++.. .......+.++.........+..+++|+|+||+++.+.+.. ....+.++++|
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~l 171 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYL 171 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcCcccceEE
Confidence 7899999999999999999999852 23455666777766666677778899999999999998776 55567889999
Q ss_pred EEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEc
Q 013392 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244 (444)
Q Consensus 174 V~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~ 244 (444)
|+||+|++.+.++...+..++..++. ..|++++|||+++....+...++.+|..+.
T Consensus 172 ViDEah~~~~~~~~~~~~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 172 VIDEADKMLDMEFEPQIRKILLDVRP---------------DRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EECCHHHHHHTTCHHHHHHHHHHSCS---------------SCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEECHHHHhccchHHHHHHHHHhCCc---------------CCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999988876 789999999999999999999999888764
No 58
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-33 Score=241.73 Aligned_cols=209 Identities=29% Similarity=0.498 Sum_probs=175.8
Q ss_pred CCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEE
Q 013392 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vl 97 (444)
.+|+++++++.+.+.+ ..+||..|+++|.++++.+++++++++++|||+|||++++++++..+... ..+.++|
T Consensus 4 ~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~------~~~~~~l 76 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAI-KTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE------RAEVQAV 76 (219)
T ss_dssp CCGGGSCCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT------SCSCCEE
T ss_pred CCHhhCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC------cCCceEE
Confidence 5799999999999999 66799999999999999999999999999999999999999999887541 2356799
Q ss_pred EEeccHHHHHHHHHHHHHHhcccC---ceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEE
Q 013392 98 VLVPTRELCLQVYEILHKLLHRFH---WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (444)
Q Consensus 98 il~P~~~L~~q~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV 174 (444)
|++|+++|+.|+.++++++....+ ......+.++.........+..+++|+|+||+++.+.+.. ....+..++++|
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lV 155 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILV 155 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEEE
Confidence 999999999999999999876542 2445556666655544444556789999999999998876 455667899999
Q ss_pred EechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcC
Q 013392 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKK 249 (444)
Q Consensus 175 ~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (444)
+||+|++.+.++...+..++..++. ..|++++|||++.....+...++.+|..+.....+
T Consensus 156 iDEah~~~~~~~~~~l~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~ 215 (219)
T 1q0u_A 156 VDEADLMLDMGFITDVDQIAARMPK---------------DLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEHH 215 (219)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHTSCT---------------TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC---
T ss_pred EcCchHHhhhChHHHHHHHHHhCCc---------------ccEEEEEecCCCHHHHHHHHHHcCCCeEEEeeccc
Confidence 9999999998888889888888765 78999999999999999999999999888665543
No 59
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=286.20 Aligned_cols=348 Identities=16% Similarity=0.208 Sum_probs=222.2
Q ss_pred CCCHHHHhHHHhHh----cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.|++||.+++.++. .++++|+.++||+|||++++..+....... .....+||||| .+++.||.+++.++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~------~~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR------RQNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH------SCCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc------CCCCCEEEEEC-chHHHHHHHHHHHH
Confidence 49999999998776 788999999999999999877766554332 22345899999 58999999999999
Q ss_pred hcccCceeeEEEeCCcchhHHHHH------------hcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhc
Q 013392 117 LHRFHWIVPGYVMGGENRSKEKAR------------LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184 (444)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~ 184 (444)
+.. .......++......... .....+|+|+||+++...... +....+++||+||||++.+.
T Consensus 309 ~p~---~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 309 APD---LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp STT---CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCS
T ss_pred CCC---ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCc
Confidence 753 333444444433333222 223578999999999764332 12236899999999998553
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecc-hhhHHHHHhh-cCCCeEEcc-----------------
Q 013392 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN-EKVNHLAKIS-LETPVLIGL----------------- 245 (444)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~-~~~~~~~~~~-~~~~~~~~~----------------- 245 (444)
. ......+..+. ....+++||||- +....+..+. +-.|..+..
T Consensus 383 ~--s~~~~~l~~l~----------------~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~ 444 (800)
T 3mwy_W 383 E--SSLYESLNSFK----------------VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYI 444 (800)
T ss_dssp S--SHHHHHHTTSE----------------EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHH
T ss_pred h--hHHHHHHHHhh----------------hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHH
Confidence 2 22223333332 556788999983 2222222211 111111110
Q ss_pred --------------cCcC----CCCCcccccccCccc---cccccccC-CCccccc--cCcccc-------cccccee--
Q 013392 246 --------------DEKK----LPEDKSHVRFGSLES---DVKEEVEH-PSTTMRS--TTEDFK-------LPAQLVQ-- 292 (444)
Q Consensus 246 --------------~~~~----~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~--~~~~~~-------~~~~~~~-- 292 (444)
.... +|.......+..+.. ........ ....... ...... +.....+
T Consensus 445 ~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~ 524 (800)
T 3mwy_W 445 HDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPY 524 (800)
T ss_dssp HHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChh
Confidence 0000 000000000000000 00000000 0000000 000000 0000000
Q ss_pred ---------------e--------EEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCC
Q 013392 293 ---------------R--------YVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQ 349 (444)
Q Consensus 293 ---------------~--------~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~ 349 (444)
. ......+.|+..+..++..+. ..+.++||||.....+..+.+.|...
T Consensus 525 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~--~~g~kvLIFsq~~~~ld~L~~~L~~~------- 595 (800)
T 3mwy_W 525 LFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK--KDGHRVLIFSQMVRMLDILGDYLSIK------- 595 (800)
T ss_dssp GSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCCEEEEESCHHHHHHHHHHHHHH-------
T ss_pred hhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHh--hCCCeEEEEechHHHHHHHHHHHHhC-------
Confidence 0 000124567888888888763 45789999999999999999999876
Q ss_pred chHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCC---cEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccc
Q 013392 350 PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK---ALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLK 426 (444)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR 426 (444)
++++..++|+++..+|..+++.|+++.. .+|++|.++++|+|++.+++||++++++|+..+.|++||
T Consensus 596 ----------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR 665 (800)
T 3mwy_W 596 ----------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMAR 665 (800)
T ss_dssp ----------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTT
T ss_pred ----------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHH
Confidence 8899999999999999999999998664 489999999999999999999999999999999999999
Q ss_pred cccCCCcccccc
Q 013392 427 HLPVGNFYFNIP 438 (444)
Q Consensus 427 ~~R~g~~g~~~~ 438 (444)
++|.||+..+..
T Consensus 666 ~~RiGQ~k~V~V 677 (800)
T 3mwy_W 666 AHRIGQKNHVMV 677 (800)
T ss_dssp TSCSSCCSCEEE
T ss_pred HHhcCCCceEEE
Confidence 999999876543
No 60
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=5.4e-34 Score=269.12 Aligned_cols=266 Identities=15% Similarity=0.109 Sum_probs=179.1
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcch
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (444)
+++++++++|||+|||+++++++++.+.. .+.+++|++|+++|+.|+.+.+.. .... +..+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~~-------~~v~-~~~~~~~ 64 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALRG-------EPIR-YMTPAVQ 64 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTT-------SCEE-EC-----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhCC-------CeEE-EEecCcc
Confidence 36899999999999999998888866544 356799999999999998887752 1112 2222111
Q ss_pred hHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCccccc
Q 013392 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214 (444)
Q Consensus 135 ~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 214 (444)
.....+..+.++|...+...+.. ...+.++++||+||+|++ ...+......+.......
T Consensus 65 ----~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~-------------- 123 (431)
T 2v6i_A 65 ----SERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMG-------------- 123 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTT--------------
T ss_pred ----ccCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCC--------------
Confidence 11122345778888888765554 334578999999999986 322222323333222111
Q ss_pred ceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccceeeE
Q 013392 215 KRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRY 294 (444)
Q Consensus 215 ~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (444)
.++++++|||+++....+. .....+. ...
T Consensus 124 ~~~~l~~SAT~~~~~~~~~------------------~~~~~i~---------------------------------~~~ 152 (431)
T 2v6i_A 124 DAGAIFMTATPPGTTEAFP------------------PSNSPII---------------------------------DEE 152 (431)
T ss_dssp SCEEEEEESSCTTCCCSSC------------------CCSSCCE---------------------------------EEE
T ss_pred CCcEEEEeCCCCcchhhhc------------------CCCCcee---------------------------------ecc
Confidence 7899999999886311100 0000000 000
Q ss_pred EEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHH
Q 013392 295 VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQED 374 (444)
Q Consensus 295 ~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (444)
...+. .+...+...+.+ .+++++|||++++.++.+++.|++. +..+..+||+ +
T Consensus 153 ~~~~~-~~~~~~~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~v~~lhg~----~ 205 (431)
T 2v6i_A 153 TRIPD-KAWNSGYEWITE-----FDGRTVWFVHSIKQGAEIGTCLQKA-----------------GKKVLYLNRK----T 205 (431)
T ss_dssp CCCCS-SCCSSCCHHHHS-----CSSCEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEESTT----T
T ss_pred ccCCH-HHHHHHHHHHHc-----CCCCEEEEeCCHHHHHHHHHHHHHc-----------------CCeEEEeCCc----c
Confidence 00000 000111222332 2568999999999999999999886 7889999996 5
Q ss_pred HHHHHHHhhcCCCcEEEEecccccCCCCCCCcE-----------------EEEccCCCCcchhhhcccccccCCCcccc
Q 013392 375 RRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC-----------------IIQYDSAGEATEYVHRYLKHLPVGNFYFN 436 (444)
Q Consensus 375 r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~-----------------vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~ 436 (444)
|.++++.|++|+.+|||||+++++|+|+| +.. ||+++.|.+..+|+||+||+||.|..+.+
T Consensus 206 r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~ 283 (431)
T 2v6i_A 206 FESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGD 283 (431)
T ss_dssp HHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCC
T ss_pred HHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCe
Confidence 77899999999999999999999999999 544 56778889999999999999999864433
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=6.8e-33 Score=240.16 Aligned_cols=207 Identities=31% Similarity=0.454 Sum_probs=174.2
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCc
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (444)
....+|+++++++.+.+.+ ..+||..|+++|.++++.+++++++++++|||+|||++++++++..+... ..+.
T Consensus 21 ~~~~~f~~l~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~------~~~~ 93 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGL-RAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE------NLST 93 (230)
T ss_dssp ---CCGGGGTCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------SCSC
T ss_pred CCCCCHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------CCCc
Confidence 4457899999999999999 66799999999999999999999999999999999999999998877541 2356
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEE
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV 174 (444)
++||++|+++|+.|+.++++++...........+.++.........+ .+++|+|+||+++.+.+.. ..+.+.+++++|
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lV 171 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFI 171 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHT-TSSCGGGCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhc-CCcccccCCEEE
Confidence 79999999999999999999987655445666667666655544433 5789999999999998876 555667899999
Q ss_pred EechhHhhhcc-hhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcc
Q 013392 175 FDEADRILELG-FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245 (444)
Q Consensus 175 ~DE~h~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~ 245 (444)
+||+|++.+.+ +...+..++..++. ..|++++|||+++....+...++.+|..+.+
T Consensus 172 iDEah~~~~~~~~~~~~~~i~~~~~~---------------~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 172 LDEADKLLEEGSFQEQINWIYSSLPA---------------SKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp ESSHHHHHSTTSSHHHHHHHHHHSCS---------------SCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred eCCchHhhcCcchHHHHHHHHHhCCC---------------CCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999998886 88888889888875 7799999999999988888888888888754
No 62
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=4.6e-33 Score=249.80 Aligned_cols=210 Identities=25% Similarity=0.435 Sum_probs=177.1
Q ss_pred hhccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcC--CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCC
Q 013392 12 KEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRID 89 (444)
Q Consensus 12 ~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~ 89 (444)
.+.....+|+++++++.+.+.| ..+||..|+++|.++++.++.+ +++++++|||+|||++|+++++..+...
T Consensus 86 ~p~~~~~~f~~l~l~~~l~~~l-~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~----- 159 (300)
T 3fmo_B 86 SPLYSVKSFEELRLKPQLLQGV-YAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA----- 159 (300)
T ss_dssp CCCCCCCCSGGGTCCHHHHHHH-HHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-----
T ss_pred CCcCCcCCHhhcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-----
Confidence 3445667899999999999999 5679999999999999999987 9999999999999999999999987542
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCC
Q 013392 90 RSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTN 169 (444)
Q Consensus 90 ~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~ 169 (444)
..++++||++|+++|+.|+.+.++.+.............++...... ...+++|+|+||++|++++.+.+.+.++.
T Consensus 160 -~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 160 -NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred -CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 33567999999999999999999998876555555556555443221 14567899999999999997656677789
Q ss_pred ccEEEEechhHhhh-cchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEccc
Q 013392 170 LRWIIFDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246 (444)
Q Consensus 170 ~~lvV~DE~h~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~ 246 (444)
+++||+||+|++.+ .++...+..+...++. .+|+++||||+++....+...++.+|..+.+.
T Consensus 236 l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~---------------~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPR---------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp CSEEEETTHHHHHHSTTHHHHHHHHHTTSCT---------------TCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred ceEEEEeCHHHHhhccCcHHHHHHHHHhCCC---------------CCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 99999999999987 5788888888877765 78999999999999999999999999988664
No 63
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=7.5e-33 Score=240.91 Aligned_cols=206 Identities=32% Similarity=0.468 Sum_probs=166.7
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
..+|+++++++++.+.| ..+||..|+++|.++++.+++++++++.+|||+|||++++++++..+... ..+.++
T Consensus 29 ~~~f~~l~l~~~l~~~l-~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~------~~~~~~ 101 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGI-YAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE------FKETQA 101 (237)
T ss_dssp CCSGGGSCCCHHHHHHH-HHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT------SCSCCE
T ss_pred cCChhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------CCCceE
Confidence 46799999999999999 56799999999999999999999999999999999999999999877531 235679
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCC-CcEEEeCchHHHHHHhccCccccCCccEEEE
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~ 175 (444)
||++|+++|+.|+.+.+++++...+ .......++.........+..+ ++|+|+||+++.+.+.. ....+..+++||+
T Consensus 102 lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lVi 179 (237)
T 3bor_A 102 LVLAPTRELAQQIQKVILALGDYMG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVL 179 (237)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEE
T ss_pred EEEECcHHHHHHHHHHHHHHhhhcC-ceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEEE
Confidence 9999999999999999999876544 3344555665555555555444 89999999999998876 4556678999999
Q ss_pred echhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEccc
Q 013392 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246 (444)
Q Consensus 176 DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~ 246 (444)
||+|++.+.++...+..++..++. ..|++++|||+++....+...++.+|..+.+.
T Consensus 180 DEah~~~~~~~~~~l~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 180 DEADEMLSRGFKDQIYEIFQKLNT---------------SIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp ESHHHHHHTTCHHHHHHHHHHSCT---------------TCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CCchHhhccCcHHHHHHHHHhCCC---------------CCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 999999988888888888888765 78999999999999999999999999887654
No 64
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=238.59 Aligned_cols=213 Identities=37% Similarity=0.616 Sum_probs=177.1
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCc
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (444)
....+|+++++++.+.+.| ..+||..|+++|.++++.+++++++++++|||+|||++++++++..+..... ....+.
T Consensus 22 ~~~~~f~~~~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~ 98 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGL-QEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDGL 98 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHH-HHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--CGGGCC
T ss_pred cccCCHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--cccCCc
Confidence 4456799999999999999 5679999999999999999999999999999999999999999988754221 112466
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEE
Q 013392 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (444)
Q Consensus 95 ~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV 174 (444)
++||++|+++|+.|+.+.+++++...+ .....+.++.........+ .+++|+|+||+++...+.....+.+.++++||
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHD-FSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSS-CCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCC-eeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 799999999999999999999876544 3445566665555444444 57899999999999988765556678999999
Q ss_pred EechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccC
Q 013392 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247 (444)
Q Consensus 175 ~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~ 247 (444)
+||+|++.+.++...+..++..++. ..|++++|||+++....+...++.+|..+.+..
T Consensus 177 iDEah~~~~~~~~~~~~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVIENLPK---------------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHHHTSCT---------------TSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred EeChHHHhcCCcHHHHHHHHHhCCC---------------CCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999998888999999888765 789999999999999999999999998876543
No 65
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.3e-32 Score=269.41 Aligned_cols=353 Identities=17% Similarity=0.217 Sum_probs=220.6
Q ss_pred CCCHHHHhHHHhHh---------cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHH
Q 013392 41 APTKVQAQAIPVIL---------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~---------~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 111 (444)
.|+|||.+++.++. .+.++|+.++||+|||++++..+.......+.. .....++|||+|+ +|+.||.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~--~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC--KPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS--SCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc--cCCCCcEEEEecH-HHHHHHHH
Confidence 49999999999874 346789999999999999888776665443221 1234569999997 89999999
Q ss_pred HHHHHhcccCceeeEEEeCCcchhHH--HHH-hc-----CCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhh
Q 013392 112 ILHKLLHRFHWIVPGYVMGGENRSKE--KAR-LR-----KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (444)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~-----~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~ 183 (444)
++.++++. ......+.++...... ... .. ...+|+|+||+.+..... .+....+++||+||+|++.+
T Consensus 132 E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 132 EVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCC
Confidence 99999764 1233344444332211 111 11 136899999999976433 23335789999999999865
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchh-hHHHHHh-------hcC-----------------
Q 013392 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK-VNHLAKI-------SLE----------------- 238 (444)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~-~~~~~~~-------~~~----------------- 238 (444)
.. ......+..+. ....+++||||-.+ ..++..+ .++
T Consensus 207 ~~--~~~~~al~~l~----------------~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~ 268 (644)
T 1z3i_X 207 SD--NQTYLALNSMN----------------AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGR 268 (644)
T ss_dssp TC--HHHHHHHHHHC----------------CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHH
T ss_pred hh--hHHHHHHHhcc----------------cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcC
Confidence 42 22333344443 44679999998332 1111000 000
Q ss_pred -----------------------CCeEEcccCc----CCCCCcccccccCcc---cccccc----------ccC------
Q 013392 239 -----------------------TPVLIGLDEK----KLPEDKSHVRFGSLE---SDVKEE----------VEH------ 272 (444)
Q Consensus 239 -----------------------~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~----------~~~------ 272 (444)
.|..++-... .+|.......+..+. ....+. ...
T Consensus 269 ~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~ 348 (644)
T 1z3i_X 269 DADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVS 348 (644)
T ss_dssp STTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHH
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchh
Confidence 0011111000 111111100000000 000000 000
Q ss_pred --------------CCcccc---ccCcc-----ccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccc
Q 013392 273 --------------PSTTMR---STTED-----FKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD 330 (444)
Q Consensus 273 --------------~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~ 330 (444)
+..... ..... ...+............+.|...+..++.... ...+.++||||++..
T Consensus 349 ~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~-~~~~~k~lIFs~~~~ 427 (644)
T 1z3i_X 349 SLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTR-TTTSDKVVLVSNYTQ 427 (644)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHH-HHCCCEEEEEESCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHh-hcCCCEEEEEEccHH
Confidence 000000 00000 0000000000111123556666666666542 234689999999999
Q ss_pred hhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCc---EEEEecccccCCCCCCCcE
Q 013392 331 AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKA---LLLSTDVAARGLDFPKVKC 407 (444)
Q Consensus 331 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---iLi~t~~~~~G~di~~~~~ 407 (444)
.++.+...|... ++.+..+||+++..+|.++++.|++|+.. +|++|.++++|+|++.+++
T Consensus 428 ~~~~l~~~l~~~-----------------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~ 490 (644)
T 1z3i_X 428 TLDLFEKLCRNR-----------------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANR 490 (644)
T ss_dssp HHHHHHHHHHHH-----------------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEE
T ss_pred HHHHHHHHHHHC-----------------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCE
Confidence 999999999876 88999999999999999999999998754 8999999999999999999
Q ss_pred EEEccCCCCcchhhhcccccccCCCccccc
Q 013392 408 IIQYDSAGEATEYVHRYLKHLPVGNFYFNI 437 (444)
Q Consensus 408 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~ 437 (444)
||++++|+|+..+.|++||++|.|++..+.
T Consensus 491 Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~ 520 (644)
T 1z3i_X 491 LVMFDPDWNPANDEQAMARVWRDGQKKTCY 520 (644)
T ss_dssp EEECSCCSSHHHHHHHHTTSSSTTCCSCEE
T ss_pred EEEECCCCCccHHHHHHHhhhhcCCCCceE
Confidence 999999999999999999999999987543
No 66
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.1e-32 Score=234.69 Aligned_cols=205 Identities=27% Similarity=0.465 Sum_probs=171.9
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
.++|+++++++.+.+.| ..+||..|+++|.++++.+++++++++++|||+|||++++++++..+... ..+.++
T Consensus 13 ~~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~------~~~~~~ 85 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAI-VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQVSV 85 (220)
T ss_dssp -CCSTTSCCCHHHHHHH-HHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC------TTCCCE
T ss_pred CCCHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc------CCCEEE
Confidence 46799999999999999 66799999999999999999999999999999999999999999876441 234579
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhc-CCCcEEEeCchHHHHHHhccCccccCCccEEEE
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~ 175 (444)
||++|+++|+.|+.++++++....+......+.++.........+. ..++|+|+||+++...+.. ....+.+++++|+
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lVi 164 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFIL 164 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEE
Confidence 9999999999999999999977654566667777766665555554 3579999999999998876 5556789999999
Q ss_pred echhHhhhc-chhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEc
Q 013392 176 DEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244 (444)
Q Consensus 176 DE~h~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~ 244 (444)
||+|++.+. ++...+..++..++. ..|++++|||+++....+...++.+|..+.
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPH---------------EKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCS---------------SSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCC---------------cCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999998863 666777777776654 789999999999999999999998887763
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.8e-32 Score=235.73 Aligned_cols=207 Identities=31% Similarity=0.514 Sum_probs=167.5
Q ss_pred cCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceE
Q 013392 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (444)
Q Consensus 17 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (444)
..+|+++++++.+.+.+ ..+||..|+++|.++++.+++++++++.+|||+|||+++++++++.+... ..+.++
T Consensus 13 ~~~f~~l~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~------~~~~~~ 85 (224)
T 1qde_A 13 VYKFDDMELDENLLRGV-FGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------VKAPQA 85 (224)
T ss_dssp CCCGGGGTCCHHHHHHH-HHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------CCSCCE
T ss_pred cCChhhcCCCHHHHHHH-HHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc------CCCceE
Confidence 36799999999999999 56699999999999999999999999999999999999999999877542 245679
Q ss_pred EEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEe
Q 013392 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (444)
Q Consensus 97 lil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~D 176 (444)
||++|+++|+.|+.+.+.++....+ .......++.........+. +++|+|+||+++...+.. ....+.++++||+|
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iViD 162 (224)
T 1qde_A 86 LMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILD 162 (224)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSC-CCEEEECC----------CT-TCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHhcccC-ceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEc
Confidence 9999999999999999999876544 34455555554444433333 489999999999998876 45567789999999
Q ss_pred chhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCc
Q 013392 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (444)
Q Consensus 177 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~ 248 (444)
|+|++.+.++...+..++..++. ..|++++|||+++....+...++.+|..+.+...
T Consensus 163 Eah~~~~~~~~~~l~~i~~~~~~---------------~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 163 EADEMLSSGFKEQIYQIFTLLPP---------------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCT---------------TCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred ChhHHhhhhhHHHHHHHHHhCCc---------------cCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999998888888888888765 7899999999999999999999999988876544
No 68
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=5.7e-33 Score=283.11 Aligned_cols=354 Identities=15% Similarity=0.118 Sum_probs=213.2
Q ss_pred CCCHHHHhHHHhHhc--------------CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHH
Q 013392 41 APTKVQAQAIPVILS--------------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~--------------~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~ 106 (444)
.||+||.+|++.++. +++++++++||||||++++. ++..+... ....++|||+|+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~-l~~ll~~~------~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFK-AARLATEL------DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHH-HHHHHTTC------TTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHH-HHHHHHhc------CCCceEEEEeCcHHHH
Confidence 499999999999874 36899999999999999744 44444321 2346899999999999
Q ss_pred HHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHh-cCCCcEEEeCchHHHHHHhccC-ccccCCccEEEEechhHhhhc
Q 013392 107 LQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARL-RKGISILVATPGRLLDHLKHTS-SFLHTNLRWIIFDEADRILEL 184 (444)
Q Consensus 107 ~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~l~~~~-~~~~~~~~lvV~DE~h~~~~~ 184 (444)
.|+.+.+..+... .+.++.........+ ..+.+|+|+||++|...+.... ...+..+.+||+||||++...
T Consensus 344 ~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~ 416 (1038)
T 2w00_A 344 YQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG 416 (1038)
T ss_dssp HHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH
T ss_pred HHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch
Confidence 9999999987642 122333444444445 3568999999999998776432 123457789999999997643
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhH----HHHHhhcCCCeEEcccCcCCCC-Cccccc-
Q 013392 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVN----HLAKISLETPVLIGLDEKKLPE-DKSHVR- 258 (444)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 258 (444)
.....+...++ ..+.++|||||..... ......++.+.........+.. ....+.
T Consensus 417 ---~~~~~I~~~~p----------------~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v 477 (1038)
T 2w00_A 417 ---EAQKNLKKKFK----------------RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKV 477 (1038)
T ss_dssp ---HHHHHHHHHCS----------------SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEE
T ss_pred ---HHHHHHHHhCC----------------cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEE
Confidence 23445555554 6799999999975321 1111122222221100000000 000000
Q ss_pred -ccCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHH-HHHhhccc-------ccCceEEEEeccc
Q 013392 259 -FGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLS-ILKHLFDT-------EVSQKLVVFFSTC 329 (444)
Q Consensus 259 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~-~l~~~~~~-------~~~~~~ivf~~~~ 329 (444)
+....... .... .. ........+.... ......+...+.. ++..+... ..+.+++|||+++
T Consensus 478 ~y~~v~~~~-~~~~-~e-------~d~~~~~~i~~~~-~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~ 547 (1038)
T 2w00_A 478 DYNDVRPQF-KSLE-TE-------TDEKKLSAAENQQ-AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSV 547 (1038)
T ss_dssp EECCCCGGG-HHHH-TC-------CCHHHHHHTCSTT-TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSH
T ss_pred EEEeccchh-hhcc-cc-------ccHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCH
Confidence 00000000 0000 00 0000000000000 0112233334333 33322111 1346899999999
Q ss_pred chhhhhhhhhhhcccCCCCCchHHHHHhhhccce-EEEecC----------C----------CH----------------
Q 013392 330 DAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKT-FRLHGN----------M----------KQ---------------- 372 (444)
Q Consensus 330 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~----------~~---------------- 372 (444)
.+|..+++.|.+......... ....+.++ ..+|++ + ++
T Consensus 548 ~~A~~~~~~l~~~~~~~~~~~-----~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~ 622 (1038)
T 2w00_A 548 DAAKAYYATFKRLQEEAANKS-----ATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSH 622 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHTTTS-----SSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhcccc-----cccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 999999999987631000000 00002333 334432 1 21
Q ss_pred -------------HHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccce
Q 013392 373 -------------EDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPL 439 (444)
Q Consensus 373 -------------~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 439 (444)
..|.+++++|++|+.+|||+|+++.+|+|+|.+ .+++++.|.+...|+|++||++|.+..++-.+.
T Consensus 623 f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~ 701 (1038)
T 2w00_A 623 FKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGN 701 (1038)
T ss_dssp HTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEE
T ss_pred hcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEE
Confidence 247889999999999999999999999999999 678889999999999999999998876566677
Q ss_pred EEee
Q 013392 440 IVCF 443 (444)
Q Consensus 440 i~~~ 443 (444)
|++|
T Consensus 702 IVdf 705 (1038)
T 2w00_A 702 IVTF 705 (1038)
T ss_dssp EEES
T ss_pred EEEc
Confidence 7776
No 69
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=241.47 Aligned_cols=208 Identities=41% Similarity=0.705 Sum_probs=174.4
Q ss_pred cccCCccccC--CCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCC
Q 013392 15 FASCSFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 92 (444)
Q Consensus 15 ~~~~~~~~~~--l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~ 92 (444)
++..+|++++ +++.+.+.+ ..+||..|+++|.++++.++.++++++++|||+|||++|+++++..+...... ...
T Consensus 49 ~~~~~f~~l~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~ 125 (262)
T 3ly5_A 49 FEDTSFASLCNLVNENTLKAI-KEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRN 125 (262)
T ss_dssp SGGGCC-----CCCHHHHHHH-HHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGG
T ss_pred cccCChhHhccccCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccC
Confidence 4556677777 999999999 66799999999999999999999999999999999999999999887653211 124
Q ss_pred CceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccE
Q 013392 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRW 172 (444)
Q Consensus 93 ~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~l 172 (444)
+.++||++|+++|+.|+.+.+++++...+ .....+.++.........+..+++|+|+||+++...+.....+.+.++++
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHV-HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCC-SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 66799999999999999999999887654 44566677777777777777789999999999999888756667789999
Q ss_pred EEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCe
Q 013392 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV 241 (444)
Q Consensus 173 vV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~ 241 (444)
||+||+|++.+.++...+..++..++. .+|++++|||+++....+.+..+..+.
T Consensus 205 lViDEah~l~~~~~~~~l~~i~~~~~~---------------~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 205 LVIDEADRILDVGFEEELKQIIKLLPT---------------RRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHHSCS---------------SSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred EEEcChHHHhhhhHHHHHHHHHHhCCC---------------CCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999998876 789999999999999999988876543
No 70
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3.3e-32 Score=239.70 Aligned_cols=219 Identities=32% Similarity=0.520 Sum_probs=180.5
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCC---CCCCC
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPR---IDRSS 92 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~---~~~~~ 92 (444)
.-.+|+++++++.+.+.| ..+||..|+++|.++++.+++++++++++|||+|||++++++++..+...... .....
T Consensus 21 ~~~~f~~l~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNI-LLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp CCCSSGGGSCCCSTTTTT-TTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred ccCCHhhCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 345799999999999999 66799999999999999999999999999999999999999999887653211 01123
Q ss_pred CceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccE
Q 013392 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRW 172 (444)
Q Consensus 93 ~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~l 172 (444)
+.++||++|+++|+.|+.++++++....+ .....+.++.........+..+++|+|+||+++.+.+.. ....++++++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~ 177 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTP-LRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKY 177 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSS-CCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCCChhhCCE
Confidence 46899999999999999999999876544 445666777777777777788899999999999998876 4556788999
Q ss_pred EEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCc
Q 013392 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (444)
Q Consensus 173 vV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~ 248 (444)
||+||+|++.+.++...+..++..+.... ....|++++|||+++....+...++.+|..+.+...
T Consensus 178 lViDEah~~~~~~~~~~~~~i~~~~~~~~-----------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 178 IVLDEADRMLDMGFEPQIRKIIEESNMPS-----------GINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHSSCCCC-----------GGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred EEEeCHHHHHhCchHHHHHHHHhhccCCC-----------CCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 99999999999989999988887543210 115799999999999999999999999988876544
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=5e-31 Score=251.06 Aligned_cols=341 Identities=15% Similarity=0.112 Sum_probs=233.9
Q ss_pred HHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHH
Q 013392 31 DQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (444)
Q Consensus 31 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 110 (444)
+.....+|+. |++.|..+.-.+..|+ |..+.||+|||+++.+|++...+. +..|.+++|+..|+.|-+
T Consensus 66 EAa~R~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---------G~~vhVvT~ndyLA~rda 133 (822)
T 3jux_A 66 EAARRTLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---------GKGVHLVTVNDYLARRDA 133 (822)
T ss_dssp HHHHHHTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---------SSCEEEEESSHHHHHHHH
T ss_pred HHHHHHhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---------CCceEEEeccHHHHHhHH
Confidence 3444555886 9999999988888887 999999999999999999876655 556999999999999999
Q ss_pred HHHHHHhcccCceeeEEEeCCc-----------------------------------------------chhHHHHHhcC
Q 013392 111 EILHKLLHRFHWIVPGYVMGGE-----------------------------------------------NRSKEKARLRK 143 (444)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~ 143 (444)
+++..+...++..+.+....+. ......++...
T Consensus 134 e~m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY 213 (822)
T 3jux_A 134 LWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY 213 (822)
T ss_dssp HHHHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH
T ss_pred HHHHHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh
Confidence 9999998888755544443110 00001112222
Q ss_pred CCcEEEeCchHH-HHHHhcc-----CccccCCccEEEEechhHhhhcc----------------hhHHHHHHHHHhcC--
Q 013392 144 GISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRILELG----------------FGKEIEEILDILGS-- 199 (444)
Q Consensus 144 ~~~iii~T~~~l-~~~l~~~-----~~~~~~~~~lvV~DE~h~~~~~~----------------~~~~~~~~~~~l~~-- 199 (444)
.+||+++|..-+ +++|... .......+.+.|+||+++++-+. ....+..+...+..
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~ 293 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDK 293 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTT
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCC
Confidence 479999998876 3455431 23345678999999999853321 01111111111110
Q ss_pred ---------------------------CCCC-----------------------------------C----CCC-----C
Q 013392 200 ---------------------------RNIG-----------------------------------S----IGE-----G 208 (444)
Q Consensus 200 ---------------------------~~~~-----------------------------------~----~~~-----~ 208 (444)
.+.. . ++. .
T Consensus 294 dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr 373 (822)
T 3jux_A 294 DFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRR 373 (822)
T ss_dssp TEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCC
T ss_pred cEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCc
Confidence 0000 0 000 0
Q ss_pred C-----------------------------cccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccc
Q 013392 209 N-----------------------------EVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRF 259 (444)
Q Consensus 209 ~-----------------------------~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (444)
+ ..-.....+.++|+|.......+...+.-. .+.+... ...
T Consensus 374 ~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtn-----kp~--- 443 (822)
T 3jux_A 374 YSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTH-----KPM--- 443 (822)
T ss_dssp CGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCS-----SCC---
T ss_pred CchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCC-----CCc---
Confidence 0 011223368889999887777776655322 2111111 100
Q ss_pred cCccccccccccCCCccccccCccccccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhh
Q 013392 260 GSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL 339 (444)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l 339 (444)
........+......|...+...+.+.. ..+.++||||++++.++.++..|
T Consensus 444 ---------------------------~R~d~~d~vy~t~~eK~~al~~~I~~~~--~~gqpVLVFt~S~e~sE~Ls~~L 494 (822)
T 3jux_A 444 ---------------------------IRKDHDDLVFRTQKEKYEKIVEEIEKRY--KKGQPVLVGTTSIEKSELLSSML 494 (822)
T ss_dssp ---------------------------CCEECCCEEESSHHHHHHHHHHHHHHHH--HHTCCEEEEESSHHHHHHHHHHH
T ss_pred ---------------------------ceeecCcEEEecHHHHHHHHHHHHHHHh--hCCCCEEEEECCHHHHHHHHHHH
Confidence 0111122344566678888888887652 34679999999999999999999
Q ss_pred hhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCC--------CCcEEEEc
Q 013392 340 SEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP--------KVKCIIQY 411 (444)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~--------~~~~vi~~ 411 (444)
.+. |+++..+||+..+.++..+.+.++.| .|+|||+++++|+|++ +..+||++
T Consensus 495 ~~~-----------------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInt 555 (822)
T 3jux_A 495 KKK-----------------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGT 555 (822)
T ss_dssp HTT-----------------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEES
T ss_pred HHC-----------------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEec
Confidence 987 88999999986666666666666655 7999999999999998 55699999
Q ss_pred cCCCCcchhhhcccccccCCCcccccceEE
Q 013392 412 DSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 412 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+.|.|.+.|.||+||+||.|++|.++.|+.
T Consensus 556 e~Pes~r~y~qriGRTGRqG~~G~a~~fvs 585 (822)
T 3jux_A 556 ERHESRRIDNQLRGRAGRQGDPGESIFFLS 585 (822)
T ss_dssp SCCSSHHHHHHHHTTSSCSSCCCEEEEEEE
T ss_pred CCCCCHHHHHHhhCccccCCCCeeEEEEec
Confidence 999999999999999999999999999875
No 72
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=6.5e-32 Score=264.58 Aligned_cols=267 Identities=14% Similarity=0.096 Sum_probs=188.5
Q ss_pred HhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeC
Q 013392 51 PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMG 130 (444)
Q Consensus 51 ~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~ 130 (444)
...+++++++++||||+|||..++..+. . ....++++|+++|+.|+++.+++.. .......+
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~al~~l~----~---------~~~gl~l~PtR~LA~Qi~~~l~~~g-----~~v~lltG 211 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYHAIQKYF----S---------AKSGVYCGPLKLLAHEIFEKSNAAG-----VPCDLVTG 211 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHHHHHHH----H---------SSSEEEEESSHHHHHHHHHHHHHTT-----CCEEEECS
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHHHHHH----h---------cCCeEEEeCHHHHHHHHHHHHHhcC-----CcEEEEEC
Confidence 3445889999999999999984443332 2 1225999999999999999998852 33444554
Q ss_pred CcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCCCCCCCCCCCc
Q 013392 131 GENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNE 210 (444)
Q Consensus 131 ~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 210 (444)
+..... ..-....+++++|++.+. ....+++||+||+|++.+.+++..+..++..++..
T Consensus 212 ~~~~iv--~TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~---------- 270 (677)
T 3rc3_A 212 EERVTV--QPNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAE---------- 270 (677)
T ss_dssp SCEECC--STTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEE----------
T ss_pred CeeEEe--cCCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCcc----------
Confidence 433310 000112578888876542 23578999999999998888888888888877631
Q ss_pred ccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccCcCCCCCcccccccCccccccccccCCCccccccCccccccccc
Q 013392 211 VSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQL 290 (444)
Q Consensus 211 ~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (444)
..+++++|||.+. ...+.... +....+...... .+...
T Consensus 271 ----~i~il~~SAT~~~-i~~l~~~~-~~~~~v~~~~r~------------------------------------~~l~~ 308 (677)
T 3rc3_A 271 ----EVHLCGEPAAIDL-VMELMYTT-GEEVEVRDYKRL------------------------------------TPISV 308 (677)
T ss_dssp ----EEEEEECGGGHHH-HHHHHHHH-TCCEEEEECCCS------------------------------------SCEEE
T ss_pred ----ceEEEeccchHHH-HHHHHHhc-CCceEEEEeeec------------------------------------chHHH
Confidence 7889999999532 22222222 122111000000 00000
Q ss_pred eeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCC
Q 013392 291 VQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNM 370 (444)
Q Consensus 291 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (444)
.... . . .+.. .....+|||.+++.++.+++.|.+. +..+..+||++
T Consensus 309 ~~~~--l---~-------~l~~-----~~~g~iIf~~s~~~ie~la~~L~~~-----------------g~~v~~lHG~L 354 (677)
T 3rc3_A 309 LDHA--L---E-------SLDN-----LRPGDCIVCFSKNDIYSVSRQIEIR-----------------GLESAVIYGSL 354 (677)
T ss_dssp CSSC--C---C-------SGGG-----CCTTEEEECSSHHHHHHHHHHHHHT-----------------TCCCEEECTTS
T ss_pred HHHH--H---H-------HHHh-----cCCCCEEEEcCHHHHHHHHHHHHhc-----------------CCCeeeeeccC
Confidence 0000 0 0 0111 1234488899999999999999886 78999999999
Q ss_pred CHHHHHHHHHHhhc--CCCcEEEEecccccCCCCCCCcEEEEccC--------------CCCcchhhhcccccccCCCc
Q 013392 371 KQEDRRTTFGAFKT--EKKALLLSTDVAARGLDFPKVKCIIQYDS--------------AGEATEYVHRYLKHLPVGNF 433 (444)
Q Consensus 371 ~~~~r~~~~~~f~~--g~~~iLi~t~~~~~G~di~~~~~vi~~~~--------------~~s~~~~~Q~~GR~~R~g~~ 433 (444)
++++|.++++.|++ |..+|||||+++++|+|+ +++.||+++. |.+..+|+||+||+||.|+.
T Consensus 355 ~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~ 432 (677)
T 3rc3_A 355 PPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSR 432 (677)
T ss_dssp CHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSS
T ss_pred CHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCC
Confidence 99999999999999 889999999999999999 9999999998 77899999999999999976
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.98 E-value=1.8e-31 Score=233.80 Aligned_cols=211 Identities=31% Similarity=0.508 Sum_probs=166.2
Q ss_pred cCCcccc----CCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCC
Q 013392 17 SCSFSSL----GLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 92 (444)
Q Consensus 17 ~~~~~~~----~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~ 92 (444)
-.+|+++ ++++.+.+.+ ..+||..|+++|.++++.+++++++++.+|||+|||++++++++..+... ...
T Consensus 24 ~~~f~~l~~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~ 97 (245)
T 3dkp_A 24 IATFQQLDQEYKINSRLLQNI-LDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP-----ANK 97 (245)
T ss_dssp CSSHHHHHHHHCCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-----CSS
T ss_pred ccCHHHhhhccCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-----ccC
Confidence 3567776 8999999999 55699999999999999999999999999999999999999999888542 134
Q ss_pred CceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHH-HHHhcCCCcEEEeCchHHHHHHhccC-ccccCCc
Q 013392 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE-KARLRKGISILVATPGRLLDHLKHTS-SFLHTNL 170 (444)
Q Consensus 93 ~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iii~T~~~l~~~l~~~~-~~~~~~~ 170 (444)
+.++||++|+++|+.|+.+.+.+++...+. ....+.++...... ......+++|+|+||+++...+.... ...+.++
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 176 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGF-RIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASV 176 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCC-CEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCc-eEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccC
Confidence 567999999999999999999998765442 22222222111111 11224568999999999999887643 4567899
Q ss_pred cEEEEechhHhhhc---chhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCCeEEcccC
Q 013392 171 RWIIFDEADRILEL---GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247 (444)
Q Consensus 171 ~lvV~DE~h~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~ 247 (444)
++||+||+|++.++ ++...+..++..+... ..|++++|||++.....+...++.+|..+.+..
T Consensus 177 ~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 177 EWLVVDESDKLFEDGKTGFRDQLASIFLACTSH--------------KVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp CEEEESSHHHHHHHC--CHHHHHHHHHHHCCCT--------------TCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred cEEEEeChHHhcccccccHHHHHHHHHHhcCCC--------------CcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99999999999884 5667777776665432 679999999999999999999999999887654
Q ss_pred c
Q 013392 248 K 248 (444)
Q Consensus 248 ~ 248 (444)
.
T Consensus 243 ~ 243 (245)
T 3dkp_A 243 R 243 (245)
T ss_dssp -
T ss_pred C
Confidence 3
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=7.5e-26 Score=219.72 Aligned_cols=139 Identities=20% Similarity=0.243 Sum_probs=111.2
Q ss_pred HHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHH
Q 013392 30 CDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (444)
Q Consensus 30 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 109 (444)
.+.....+|+ +|+++|..+++.+++|+ +..+.||+|||+++++|++..... +..++|++||+.|+.|.
T Consensus 69 REAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---------G~qv~VvTPTreLA~Qd 136 (997)
T 2ipc_A 69 RESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---------GKGVHVVTVNDYLARRD 136 (997)
T ss_dssp HHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---------CSCCEEEESSHHHHHHH
T ss_pred HHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHHH
Confidence 3444455799 69999999999999998 999999999999999999765543 34699999999999999
Q ss_pred HHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHH-HHHHhccC-----ccccC---CccEEEEechhH
Q 013392 110 YEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTS-----SFLHT---NLRWIIFDEADR 180 (444)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~~-----~~~~~---~~~lvV~DE~h~ 180 (444)
++++..++..++ .....+.+|.... .+....+++|+|+||..+ ++++...- ...++ .++++|+||+|+
T Consensus 137 ae~m~~l~~~lG-Lsv~~i~Gg~~~~--~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 137 AEWMGPVYRGLG-LSVGVIQHASTPA--ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp HHHHHHHHHTTT-CCEEECCTTCCHH--HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred HHHHHHHHHhcC-CeEEEEeCCCCHH--HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 999999988776 5556666666533 333345689999999999 78777532 24566 899999999999
Q ss_pred hhh
Q 013392 181 ILE 183 (444)
Q Consensus 181 ~~~ 183 (444)
++.
T Consensus 214 mLi 216 (997)
T 2ipc_A 214 ILI 216 (997)
T ss_dssp HTT
T ss_pred HHH
Confidence 863
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=1.4e-25 Score=221.72 Aligned_cols=120 Identities=13% Similarity=0.122 Sum_probs=105.8
Q ss_pred CcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHH
Q 013392 301 SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFG 380 (444)
Q Consensus 301 ~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 380 (444)
.+...+...+.... ..+.++||||+++..++.+.+.|.+. ++++..+||+++..+|.++++
T Consensus 423 ~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ae~L~~~L~~~-----------------gi~~~~lh~~~~~~~R~~~~~ 483 (664)
T 1c4o_A 423 NQILDLMEGIRERA--ARGERTLVTVLTVRMAEELTSFLVEH-----------------GIRARYLHHELDAFKRQALIR 483 (664)
T ss_dssp THHHHHHHHHHHHH--HTTCEEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEECTTCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhc-----------------CCCceeecCCCCHHHHHHHHH
Confidence 44555555555442 34679999999999999999999987 888999999999999999999
Q ss_pred HhhcCCCcEEEEecccccCCCCCCCcEEEEccC-----CCCcchhhhcccccccCCCcccccceE
Q 013392 381 AFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS-----AGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 381 ~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
.|++|+.+|||||+++++|+|+|++++||+++. |.|...|+||+||+||.| .|.++.++
T Consensus 484 ~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~ 547 (664)
T 1c4o_A 484 DLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYA 547 (664)
T ss_dssp HHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEEC
T ss_pred HhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEE
Confidence 999999999999999999999999999999997 889999999999999984 78877664
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=6.5e-24 Score=209.66 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=106.5
Q ss_pred CcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHH
Q 013392 301 SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFG 380 (444)
Q Consensus 301 ~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 380 (444)
.+...+...+.... ..+.++||||+++..++.+.+.|.+. ++++..+||++++.+|.++++
T Consensus 429 ~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ae~L~~~L~~~-----------------gi~~~~lh~~~~~~~R~~~l~ 489 (661)
T 2d7d_A 429 GQIDDLIGEIQARI--ERNERVLVTTLTKKMSEDLTDYLKEI-----------------GIKVNYLHSEIKTLERIEIIR 489 (661)
T ss_dssp THHHHHHHHHHHHH--TTTCEEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEECTTCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHhc-----------------CCCeEEEeCCCCHHHHHHHHH
Confidence 44455555555542 34679999999999999999999987 888999999999999999999
Q ss_pred HhhcCCCcEEEEecccccCCCCCCCcEEEEccC-----CCCcchhhhcccccccCCCcccccceE
Q 013392 381 AFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS-----AGEATEYVHRYLKHLPVGNFYFNIPLI 440 (444)
Q Consensus 381 ~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~g~~g~~~~~i 440 (444)
.|++|+.+|||||+++++|+|+|++++||+++. |.+...|+||+||+||. ..|.++.++
T Consensus 490 ~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~ 553 (661)
T 2d7d_A 490 DLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYA 553 (661)
T ss_dssp HHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEEC
T ss_pred HHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEE
Confidence 999999999999999999999999999999997 89999999999999998 788888765
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.93 E-value=1.8e-25 Score=182.03 Aligned_cols=134 Identities=27% Similarity=0.385 Sum_probs=125.3
Q ss_pred cccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEE
Q 013392 287 PAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366 (444)
Q Consensus 287 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (444)
+.++.+.++.++...|...+..++... .+.++||||+++..++.+++.|... ++.+..+
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~~~~~ 65 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTE----NPDSCIIFCRTKEHVNQLTDELDDL-----------------GYPCDKI 65 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEE
T ss_pred cccceEEEEECChHHHHHHHHHHHHhc----CCCcEEEEECCHHHHHHHHHHHHHc-----------------CCcEEEE
Confidence 456889999999999999999988763 4579999999999999999999886 8899999
Q ss_pred ecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 367 ~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|++...|+||+||+||.|++|.++.++.
T Consensus 66 hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~ 140 (163)
T 2hjv_A 66 HGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVT 140 (163)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEEC
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988764
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=2e-25 Score=183.13 Aligned_cols=134 Identities=25% Similarity=0.389 Sum_probs=124.3
Q ss_pred cccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEE
Q 013392 287 PAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366 (444)
Q Consensus 287 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (444)
+..+.+.++.++...|...+..+++.. .+.++||||+++..++.+++.|... ++.+..+
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~~~~~ 61 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL----EFNQVVIFVKSVQRCIALAQLLVEQ-----------------NFPAIAI 61 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS----CCSSEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEE
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC----CCCcEEEEECCHHHHHHHHHHHHhc-----------------CCCEEEE
Confidence 356788999999999999999998863 4579999999999999999999887 8899999
Q ss_pred ecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 367 ~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.++.|+.
T Consensus 62 hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~ 136 (172)
T 1t5i_A 62 HRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 136 (172)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEEC
T ss_pred ECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998864
No 79
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.92 E-value=8.5e-25 Score=178.54 Aligned_cols=133 Identities=23% Similarity=0.364 Sum_probs=116.7
Q ss_pred ccceeeEEEcCCCC-cHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEE
Q 013392 288 AQLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366 (444)
Q Consensus 288 ~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (444)
.++.+.++.++... |...+..+++.. .+.++||||++++.++.+++.|... ++.+..+
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~~~~~ 60 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI----SVTQAVIFCNTRRKVEELTTKLRND-----------------KFTVSAI 60 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT----TCSCEEEEESSHHHHHHHHHHHHHT-----------------TCCEEEE
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHc-----------------CCCEEEE
Confidence 35677888888777 999999988863 4679999999999999999999886 7889999
Q ss_pred ecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 367 ~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|++...|.||+||+||.|++|.++.++.
T Consensus 61 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~ 135 (165)
T 1fuk_A 61 YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 135 (165)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEE
T ss_pred ECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988764
No 80
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.92 E-value=2.6e-25 Score=185.19 Aligned_cols=133 Identities=29% Similarity=0.429 Sum_probs=119.8
Q ss_pred cccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEE
Q 013392 287 PAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366 (444)
Q Consensus 287 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (444)
..++.+.+..++...|...+..++... +.++||||+++..++.+++.|... ++.+..+
T Consensus 27 ~~~i~q~~~~~~~~~K~~~L~~~l~~~-----~~~~lVF~~~~~~~~~l~~~L~~~-----------------g~~~~~l 84 (191)
T 2p6n_A 27 SLDVIQEVEYVKEEAKMVYLLECLQKT-----PPPVLIFAEKKADVDAIHEYLLLK-----------------GVEAVAI 84 (191)
T ss_dssp -CCSEEEEEECCGGGHHHHHHHHHTTS-----CSCEEEECSCHHHHHHHHHHHHHH-----------------TCCEEEE
T ss_pred CcCceEEEEEcChHHHHHHHHHHHHhC-----CCCEEEEECCHHHHHHHHHHHHHc-----------------CCcEEEE
Confidence 356788888888899999988888652 458999999999999999999876 8899999
Q ss_pred ecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 367 ~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||++++|++...|+||+||+||.|++|.+++|+.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~ 159 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFIN 159 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEEC
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998864
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.92 E-value=4.2e-25 Score=183.26 Aligned_cols=136 Identities=29% Similarity=0.408 Sum_probs=112.6
Q ss_pred ccccceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEE
Q 013392 286 LPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFR 365 (444)
Q Consensus 286 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (444)
.+.++.+.++.++...|...+.++++.. ..+.++||||+++..++.+++.|... ++.+..
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~-----------------g~~~~~ 75 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE-----------------GYACTS 75 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT-----------------TCCEEE
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc-----------------CCceEE
Confidence 4567899999999999999999999874 35689999999999999999999886 889999
Q ss_pred EecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 366 ~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++.||++++|++...|+||+||+||.|++|.++.|+.
T Consensus 76 lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 151 (185)
T 2jgn_A 76 IHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 151 (185)
T ss_dssp EC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEEC
T ss_pred EeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988763
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=8.9e-25 Score=180.28 Aligned_cols=134 Identities=20% Similarity=0.318 Sum_probs=119.0
Q ss_pred cccceeeEEEcCCCC-cHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEE
Q 013392 287 PAQLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFR 365 (444)
Q Consensus 287 ~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (444)
+.++.+.++.++... |...+..+++.. .+.++||||+++..++.++..|... ++.+..
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~~~~ 63 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI----TIGQAIIFCQTRRNAKWLTVEMIQD-----------------GHQVSL 63 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS----CCSEEEEECSCHHHHHHHHHHHHTT-----------------TCCEEE
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHc-----------------CCcEEE
Confidence 467888999888765 888888887653 4679999999999999999999886 889999
Q ss_pred EecCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCC------CCcchhhhcccccccCCCcccccce
Q 013392 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA------GEATEYVHRYLKHLPVGNFYFNIPL 439 (444)
Q Consensus 366 ~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~------~s~~~~~Q~~GR~~R~g~~g~~~~~ 439 (444)
+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.| .+...|+||+||+||.|+.|.++.+
T Consensus 64 ~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~ 143 (175)
T 2rb4_A 64 LSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNM 143 (175)
T ss_dssp ECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEE
T ss_pred EeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999999 8999999999999999999999887
Q ss_pred EE
Q 013392 440 IV 441 (444)
Q Consensus 440 i~ 441 (444)
+.
T Consensus 144 ~~ 145 (175)
T 2rb4_A 144 IE 145 (175)
T ss_dssp EC
T ss_pred Ec
Confidence 63
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=3.9e-24 Score=181.67 Aligned_cols=132 Identities=29% Similarity=0.373 Sum_probs=120.2
Q ss_pred cceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEec
Q 013392 289 QLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHG 368 (444)
Q Consensus 289 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (444)
...+..+.++...|...+..++... .+.++||||+++..++.+++.|... ++.+..+||
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~~~~lhg 63 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRL-----------------GHPAQALHG 63 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHH----CCSCEEEECSSHHHHHHHHHHHHHH-----------------TCCEEEECS
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHHc-----------------CCCEEEEEC
Confidence 3456677788899999999998763 4679999999999999999999887 889999999
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 369 NMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 369 ~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+++..+|..+++.|++|..+|||||+++++|+|+|++++||++++|++...|.||+||+||.|+.|.++.++.
T Consensus 64 ~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~ 136 (212)
T 3eaq_A 64 DLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYG 136 (212)
T ss_dssp SSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEEC
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988763
No 84
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=5.3e-24 Score=182.82 Aligned_cols=180 Identities=20% Similarity=0.164 Sum_probs=114.7
Q ss_pred CCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHH-HHHHHHHH
Q 013392 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ-VYEILHKL 116 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q-~~~~l~~~ 116 (444)
+...|+++|.++++.++.++++++.+|||+|||++++.+++..+...... ..+.++||++|+++|+.| +.+.+.++
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT---TCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc---cCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 33459999999999999999999999999999999999988776542211 235679999999999999 78888887
Q ss_pred hcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCc-----cccCCccEEEEechhHhhhcchhHHH-
Q 013392 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS-----FLHTNLRWIIFDEADRILELGFGKEI- 190 (444)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~-----~~~~~~~lvV~DE~h~~~~~~~~~~~- 190 (444)
... ......+.++............+++|+|+||+.+...+..... ..+..+++||+||+|++...++...+
T Consensus 107 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 107 LKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred hcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 654 2333444444433333333334678999999999998876432 45678899999999998776544433
Q ss_pred HHHHHHhcCCCCCCCCCCCcccccceeEEEEEee
Q 013392 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSAT 224 (444)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat 224 (444)
..+......... ............+++++|||
T Consensus 185 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNR--LKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHH--HHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhccccc--ccccccCCCCcceEEEeecC
Confidence 333222200000 00000000116799999998
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=2.3e-23 Score=184.94 Aligned_cols=131 Identities=30% Similarity=0.380 Sum_probs=118.1
Q ss_pred ceeeEEEcCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecC
Q 013392 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN 369 (444)
Q Consensus 290 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (444)
+.+.++.++...|...+.+++... .+.++||||+++..++.+++.|... ++.+..+||+
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~----~~~~~LVF~~t~~~~~~l~~~L~~~-----------------g~~~~~lhg~ 61 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRL-----------------GHPAQALHGD 61 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHTT-----------------TCCEEEECSC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhc----CCCCEEEEECCHHHHHHHHHHHHhC-----------------CCCEEEEeCC
Confidence 567888899999999999998874 3689999999999999999999876 8899999999
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 370 MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 370 ~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
+++.+|..+++.|++|..+|||||+++++|+|+|++++||+++.|++...|+||+||+||.|+.|.++.|+.
T Consensus 62 l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~ 133 (300)
T 3i32_A 62 MSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYG 133 (300)
T ss_dssp CCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEEC
T ss_pred CCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998863
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.81 E-value=7.9e-25 Score=179.58 Aligned_cols=132 Identities=26% Similarity=0.390 Sum_probs=119.6
Q ss_pred cceeeEEEcCC-CCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEe
Q 013392 289 QLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLH 367 (444)
Q Consensus 289 ~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (444)
++.+.+..++. ..|...+..+++. ..+.++||||+++..++.+++.|... ++.+..+|
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~----~~~~~~iVF~~~~~~~~~l~~~L~~~-----------------~~~~~~~~ 61 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ----PEATRSIVFVRKRERVHELANWLREA-----------------GINNCYLE 61 (170)
Confidence 45566777776 7888888887765 34679999999999999999999876 78899999
Q ss_pred cCCCHHHHHHHHHHhhcCCCcEEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCcccccceEE
Q 013392 368 GNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNIPLIV 441 (444)
Q Consensus 368 ~~~~~~~r~~~~~~f~~g~~~iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~i~ 441 (444)
|+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.++.++.
T Consensus 62 g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~ 135 (170)
T 2yjt_D 62 GEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE 135 (170)
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988763
No 87
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=7.4e-22 Score=176.19 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=117.1
Q ss_pred CCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhccc
Q 013392 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~ 120 (444)
.|+++|.++++.++.+++.++++|||+|||++++.++...+.. ...++||++|+++|+.||.+++.+++...
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 5999999999999988889999999999999998877776544 23369999999999999999999986432
Q ss_pred CceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCC
Q 013392 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (444)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~ 200 (444)
. .....+.++..... ....+.+|+|+||+.+... ....+..+++||+||||++.. .....++..+..
T Consensus 185 ~-~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~----~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~- 251 (282)
T 1rif_A 185 H-AMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNN- 251 (282)
T ss_dssp G-GGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTT-
T ss_pred c-ceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh----HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhc-
Confidence 2 23344444443322 2234578999999987543 223456889999999998764 344455554433
Q ss_pred CCCCCCCCCcccccceeEEEEEeecchhhHHHH
Q 013392 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA 233 (444)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~ 233 (444)
..+++++|||+++......
T Consensus 252 --------------~~~~l~lSATp~~~~~~~~ 270 (282)
T 1rif_A 252 --------------CMFKFGLSGSLRDGKANIM 270 (282)
T ss_dssp --------------CCEEEEECSSCCTTSTTHH
T ss_pred --------------CCeEEEEeCCCCCcchHHH
Confidence 7899999999987554433
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.86 E-value=6.4e-21 Score=184.80 Aligned_cols=68 Identities=24% Similarity=0.238 Sum_probs=53.7
Q ss_pred HcCCCCCCHHHHhHHHh----HhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHH
Q 013392 36 RLGFEAPTKVQAQAIPV----ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (444)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~----~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 111 (444)
-+|| +||++|.+++.. +..++++++++|||+|||++++++++.. +.+++|++||++|+.|+.+
T Consensus 3 ~~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------------~~~~~~~~~t~~l~~q~~~ 69 (540)
T 2vl7_A 3 VLKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------------KKKVLIFTRTHSQLDSIYK 69 (540)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------------TCEEEEEESCHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------------CCcEEEEcCCHHHHHHHHH
Confidence 3478 599999998654 4578999999999999999999998653 3569999999999999998
Q ss_pred HHHHH
Q 013392 112 ILHKL 116 (444)
Q Consensus 112 ~l~~~ 116 (444)
++..+
T Consensus 70 ~~~~l 74 (540)
T 2vl7_A 70 NAKLL 74 (540)
T ss_dssp HHGGG
T ss_pred HHHhc
Confidence 88774
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.85 E-value=4.7e-20 Score=159.66 Aligned_cols=169 Identities=21% Similarity=0.232 Sum_probs=119.2
Q ss_pred CCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhccc
Q 013392 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~ 120 (444)
.++++|.++++.+..++++++.||||+|||..+..+++........ ....++++++|+++++.|..+.+.......
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4899999999999999999999999999998888877776554211 124479999999999999999888765432
Q ss_pred CceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHh-hhcchh-HHHHHHHHHhc
Q 013392 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI-LELGFG-KEIEEILDILG 198 (444)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~-~~~~~~-~~~~~~~~~l~ 198 (444)
.....+...... ......+++|+|+||+++.+.+.. .++++++||+||+|+. .+.++. ..+..+....+
T Consensus 137 ~~~~~g~~~~~~-----~~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~ 207 (235)
T 3llm_A 137 PGKSCGYSVRFE-----SILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP 207 (235)
T ss_dssp TTSSEEEEETTE-----EECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred cCceEEEeechh-----hccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC
Confidence 111111111100 001124478999999999998875 3678999999999984 444444 34445554432
Q ss_pred CCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHhhcCCC
Q 013392 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP 240 (444)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~ 240 (444)
..|++++|||++... +...+...|
T Consensus 208 ----------------~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 208 ----------------EVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp ----------------TSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred ----------------CCeEEEEecCCCHHH--HHHHcCCCC
Confidence 678999999998765 555444444
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.84 E-value=3.1e-19 Score=173.71 Aligned_cols=132 Identities=17% Similarity=0.113 Sum_probs=94.7
Q ss_pred CCCCCCHHHHhHHHh----HhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHH
Q 013392 38 GFEAPTKVQAQAIPV----ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~----~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l 113 (444)
||. +|++|.++++. +..++++++++|||+|||++++++++.. +.+++|++||++|+.|+.+++
T Consensus 1 ~~~-~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------------~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 1 MVK-LRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------------KPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp CCS-CCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------------CSEEEEEESSGGGHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------------CCeEEEEcCCHHHHHHHHHHH
Confidence 464 99999997765 4478999999999999999999999871 456999999999999999988
Q ss_pred HHHhcccCceeeEEEeCCcc---------------------------------hhHH------------------HHHhc
Q 013392 114 HKLLHRFHWIVPGYVMGGEN---------------------------------RSKE------------------KARLR 142 (444)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~------------------~~~~~ 142 (444)
..+....+ .....+.+... .... .+...
T Consensus 68 ~~l~~~~~-~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 68 TKIREKRN-ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp TTCCCSSC-CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHhhhcC-ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 88754332 22233322111 0011 12234
Q ss_pred CCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhh
Q 013392 143 KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (444)
Q Consensus 143 ~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~ 183 (444)
..++|+|+||..|++...+..........++||||||++.+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 56899999999998875442221223667999999999876
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.81 E-value=1.2e-19 Score=156.79 Aligned_cols=139 Identities=24% Similarity=0.203 Sum_probs=103.8
Q ss_pred CCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhccc
Q 013392 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~ 120 (444)
.|+++|.++++.++.++++++++|||+|||.+++.++... +.+++|++|+++|+.||.+++.++ +
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~-~-- 157 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF-G-- 157 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG-C--
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC-C--
Confidence 4999999999999999899999999999999988776552 345999999999999999999883 2
Q ss_pred CceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHHHhcCC
Q 013392 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (444)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~~l~~~ 200 (444)
......+.++.. ...+|+|+||+.+...... ....+++||+||+|++.+..+. .+...+.
T Consensus 158 -~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~~~~----~i~~~~~-- 217 (237)
T 2fz4_A 158 -EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-- 217 (237)
T ss_dssp -GGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTHH----HHHHTCC--
T ss_pred -CCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH----hcccCCEEEEECCccCCChHHH----HHHHhcc--
Confidence 121344444332 2468999999998775542 1246899999999998665443 2333332
Q ss_pred CCCCCCCCCcccccceeEEEEEeecchh
Q 013392 201 NIGSIGEGNEVSNVKRQNLLLSATLNEK 228 (444)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~Sat~~~~ 228 (444)
..+++++|||+...
T Consensus 218 --------------~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 218 --------------APFRLGLTATFERE 231 (237)
T ss_dssp --------------CSEEEEEEESCC--
T ss_pred --------------CCEEEEEecCCCCC
Confidence 56789999998753
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.76 E-value=2e-18 Score=151.51 Aligned_cols=123 Identities=13% Similarity=0.217 Sum_probs=96.5
Q ss_pred cCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHH
Q 013392 297 VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR 376 (444)
Q Consensus 297 ~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 376 (444)
...+.|+..+..++.... ..+.++||||++...++.+.+.|.... |+.+..+||+++..+|.
T Consensus 92 ~~~s~K~~~L~~ll~~~~--~~~~kvlIFs~~~~~~~~l~~~L~~~~----------------g~~~~~l~G~~~~~~R~ 153 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEAL--DEGDKIAIFTQFVDMGKIIRNIIEKEL----------------NTEVPFLYGELSKKERD 153 (271)
T ss_dssp STTCHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHHHH----------------CSCCCEECTTSCHHHHH
T ss_pred cccCHHHHHHHHHHHHHH--hCCCeEEEEeccHHHHHHHHHHHHHhc----------------CCcEEEEECCCCHHHHH
Confidence 346779999999998764 357899999999999999999997631 77889999999999999
Q ss_pred HHHHHhhcC-CCc-EEEEecccccCCCCCCCcEEEEccCCCCcchhhhcccccccCCCccccc
Q 013392 377 TTFGAFKTE-KKA-LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRYLKHLPVGNFYFNI 437 (444)
Q Consensus 377 ~~~~~f~~g-~~~-iLi~t~~~~~G~di~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~ 437 (444)
++++.|++| ..+ +|++|+++++|+|++.++.||+|++|+|+..|.||+||++|.|+++.+.
T Consensus 154 ~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~ 216 (271)
T 1z5z_A 154 DIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVI 216 (271)
T ss_dssp HHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCE
T ss_pred HHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceE
Confidence 999999998 677 7889999999999999999999999999999999999999999988753
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.76 E-value=7.8e-17 Score=157.91 Aligned_cols=70 Identities=26% Similarity=0.239 Sum_probs=59.4
Q ss_pred CCCHHHHhHHHh----HhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPV----ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 41 ~~~~~Q~~~~~~----~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
+||+.|.+.+.. +.+++++++++|||+|||++++++++..+.. .+.+++|++||+++..|+.+++..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~--------~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE--------RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH--------HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh--------cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 499999998864 4588999999999999999999999988754 2467999999999999999998887
Q ss_pred hc
Q 013392 117 LH 118 (444)
Q Consensus 117 ~~ 118 (444)
..
T Consensus 75 ~~ 76 (620)
T 4a15_A 75 SS 76 (620)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.76 E-value=4.4e-08 Score=96.01 Aligned_cols=85 Identities=22% Similarity=0.256 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHH--hHHHHHHHHhccCCCCCCCCCceEEEEeccHHH
Q 013392 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVA--YLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (444)
Q Consensus 28 ~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~--~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L 105 (444)
.+...|...++-....+.|++++..++.++.+++.|++|+|||.+ +++..+..... ..+.++++++||..+
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-------~~~~~vll~APTg~A 208 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-------GERCRIRLAAPTGKA 208 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-------SCCCCEEEEBSSHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-------cCCCeEEEEeCChhH
Confidence 355555333322223689999999999999999999999999954 34444433211 234579999999999
Q ss_pred HHHHHHHHHHHhcc
Q 013392 106 CLQVYEILHKLLHR 119 (444)
Q Consensus 106 ~~q~~~~l~~~~~~ 119 (444)
+.+..+.+......
T Consensus 209 A~~L~e~~~~~~~~ 222 (608)
T 1w36_D 209 AARLTESLGKALRQ 222 (608)
T ss_dssp HHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99998887766544
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.48 E-value=3.4e-07 Score=90.80 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=55.8
Q ss_pred CCCHHHHhHHHhHhcCC-cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 41 APTKVQAQAIPVILSGR-HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~-~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.|++.|.+|+..++..+ -.+|+||+|+|||.+.+..+.+.+.. +.++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 48999999999988665 46999999999999877766666543 457999999999999999888764
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.40 E-value=2.3e-06 Score=83.04 Aligned_cols=65 Identities=22% Similarity=0.232 Sum_probs=50.3
Q ss_pred CCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHH
Q 013392 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 112 (444)
++. +++.|++++..+..++.+++.|++|+|||.++.. ++..+.. .+.++++++||...+....+.
T Consensus 187 ~~~-L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~-l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 187 RKG-LSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKA-VADLAES--------LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTT-CCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHH-HHHHHHH--------TTCCEEEEESSHHHHHHHHHH
T ss_pred cCC-CCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHH-HHHHHHh--------cCCeEEEecCcHHHHHHhHhh
Confidence 454 8999999999999999999999999999976443 3333333 345699999998888766553
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.35 E-value=3e-06 Score=80.37 Aligned_cols=69 Identities=26% Similarity=0.324 Sum_probs=50.2
Q ss_pred cCCCCCCHHHHhHHHhHhc----CC-cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHH
Q 013392 37 LGFEAPTKVQAQAIPVILS----GR-HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (444)
Q Consensus 37 ~~~~~~~~~Q~~~~~~~~~----~~-~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 111 (444)
+.|..|++-|++++..++. ++ .+++.|+.|+|||.++.. ++..+... ....+++++||...+..+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~-~~~~l~~~-------~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKF-IIEALIST-------GETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHH-HHHHHHHT-------TCCCEEEEESSHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHH-HHHHHHhc-------CCceEEEecCcHHHHHHHHh
Confidence 4788899999999997753 23 899999999999976544 34444331 12359999999887776655
Q ss_pred HH
Q 013392 112 IL 113 (444)
Q Consensus 112 ~l 113 (444)
.+
T Consensus 93 ~~ 94 (459)
T 3upu_A 93 LS 94 (459)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.34 E-value=3.4e-06 Score=83.10 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=56.1
Q ss_pred CCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 39 FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 39 ~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
+..+++.|.+|+..++.+...+|.||+|+|||.+....+...... .+.++++++||...+.+..+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~--------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS--------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc--------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 345899999999998888888999999999998766554443321 3556999999999999999888764
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=4.8e-06 Score=83.93 Aligned_cols=70 Identities=23% Similarity=0.259 Sum_probs=56.6
Q ss_pred CCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 39 FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 39 ~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
+..+++.|.+|+..++.+.-.+|.||+|+|||.+....+...... .+.++|+++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~--------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI--------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH--------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 345889999999999887778999999999998766555444332 2456999999999999999998875
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.19 E-value=7.8e-06 Score=82.29 Aligned_cols=69 Identities=23% Similarity=0.251 Sum_probs=55.1
Q ss_pred CCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
..+++.|.+|+..++.+.-.+|.||+|+|||.+....+.... . ..+.++++++||...+.++.+.+.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~-~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLA-R-------QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHH-T-------TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHH-H-------cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 357999999999988887889999999999987655444333 2 13556999999999999998887654
No 101
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.02 E-value=2.7e-05 Score=68.39 Aligned_cols=111 Identities=11% Similarity=0.102 Sum_probs=83.5
Q ss_pred cCCCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHH
Q 013392 297 VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR 376 (444)
Q Consensus 297 ~~~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 376 (444)
+..+.|+..+..+|.... ..+++++||+...+..+.+.+++... +++...+.|.....+ .
T Consensus 105 ~~~SGKf~~L~~LL~~l~--~~~~kVLIfsq~t~~LDilE~~l~~~-----------------~~~y~RlDG~~~~~~-~ 164 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQ--EYETETAIVCRPGRTMDLLEALLLGN-----------------KVHIKRYDGHSIKSA-A 164 (328)
T ss_dssp HHTCHHHHHHHHHHHHHT--TSCEEEEEEECSTHHHHHHHHHHTTS-----------------SCEEEESSSCCC-----
T ss_pred HHcCccHHHHHHHHHHHH--hCCCEEEEEECChhHHHHHHHHHhcC-----------------CCceEeCCCCchhhh-h
Confidence 347889999999998874 56789999999999999999999876 888999999854432 1
Q ss_pred HHHHHhhcCCCcEEEEecccccCCC-----CCCCcEEEEccCCCCcchh-hhcccccccCC
Q 013392 377 TTFGAFKTEKKALLLSTDVAARGLD-----FPKVKCIIQYDSAGEATEY-VHRYLKHLPVG 431 (444)
Q Consensus 377 ~~~~~f~~g~~~iLi~t~~~~~G~d-----i~~~~~vi~~~~~~s~~~~-~Q~~GR~~R~g 431 (444)
+ -.++...+.+.|.....|+| +..++.||.||..+|+..= +|.+-|+.|.|
T Consensus 165 k----~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~ 221 (328)
T 3hgt_A 165 A----ANDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRER 221 (328)
T ss_dssp -------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---
T ss_pred h----cccCCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhc
Confidence 1 12345555555766666775 6789999999999999874 99999999974
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.87 E-value=0.00029 Score=64.22 Aligned_cols=75 Identities=12% Similarity=0.127 Sum_probs=58.9
Q ss_pred CCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
++. |.++|+..+..+...+.+++..+-+.|||..+...++..+.. ..+..+++++|+...+..+.+.+..+.
T Consensus 161 p~~-L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 161 KVQ-LRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp ECC-CCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 344 999999999887655678999999999999877766665444 235679999999999988888888776
Q ss_pred ccc
Q 013392 118 HRF 120 (444)
Q Consensus 118 ~~~ 120 (444)
...
T Consensus 233 ~~~ 235 (385)
T 2o0j_A 233 ELL 235 (385)
T ss_dssp HHS
T ss_pred HhC
Confidence 543
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.73 E-value=0.0012 Score=64.69 Aligned_cols=73 Identities=12% Similarity=0.122 Sum_probs=59.0
Q ss_pred CCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccC
Q 013392 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~ 121 (444)
|.++|+..+..+...+.+++..+-|.|||......++..+.. .++..++++.|+...+..+...++.+....+
T Consensus 164 l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 164 LRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 899999999887556778999999999999877666655554 2355799999999999999888888776543
No 104
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.28 E-value=0.00061 Score=67.75 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=57.5
Q ss_pred CCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
..+++-|.+++.. .+..++|.|+.|||||.+.+.-+.+.+.... ....++|++++|...+.++.+++.+..+
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-----~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-----CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-----CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-----CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 4599999999984 4678999999999999987776666654411 1345699999999999999999988754
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.22 E-value=0.0024 Score=51.80 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.++.+++.||+|+|||..+-.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999976544
No 106
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.20 E-value=0.00079 Score=55.53 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=27.5
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~ 104 (444)
+-.++.|++|+|||..++-.+..... .+.+++++.|.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~---------~g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQF---------AKQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH---------TTCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH---------CCCEEEEEEeccC
Confidence 34578999999999776665555443 3667999999764
No 107
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.12 E-value=0.0024 Score=51.80 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
++=.++.||+|+|||.-.+..+-+.... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEccc
Confidence 4556899999999997666655555433 4669999887
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.12 E-value=0.0014 Score=53.49 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~ 103 (444)
++-.++.||+|+|||..++-.+..... .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~---------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKI---------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH---------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH---------CCCEEEEEEecc
Confidence 445688999999999776655544432 366799999874
No 109
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.09 E-value=0.0076 Score=54.29 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=28.2
Q ss_pred CCHHHHhHHHhHh----cCC---cEEEEcCCCCchhHHhHHHHHHH
Q 013392 42 PTKVQAQAIPVIL----SGR---HVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 42 ~~~~Q~~~~~~~~----~~~---~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
+.|||.+++..+. +++ .+++.||.|+|||..+...+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 4688888877665 333 37999999999998766544433
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.06 E-value=0.00027 Score=57.69 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~ 103 (444)
++-.++.||+|+|||..++-.+...... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---------g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---------KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---------TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEeecc
Confidence 4557899999999998766554444322 45688888884
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.05 E-value=0.0006 Score=57.16 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=51.4
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcch
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (444)
.|.-.++.|++|+|||..++-.+..... .+.+++++.|...-. . ......+.+ ...
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~---------~g~kVli~~~~~d~r---~--~~~i~srlG----------~~~ 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY---------ADVKYLVFKPKIDTR---S--IRNIQSRTG----------TSL 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH---------TTCCEEEEEECCCGG---G--CSSCCCCCC----------CSS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh---------cCCEEEEEEeccCch---H--HHHHHHhcC----------CCc
Confidence 3445688899999999776665554442 355688888764210 0 001111111 000
Q ss_pred hHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhH
Q 013392 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR 180 (444)
Q Consensus 135 ~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~ 180 (444)
..+-+.+.+.++..+... .....+++||+||++-
T Consensus 67 ----------~~~~~~~~~~i~~~i~~~--~~~~~~dvViIDEaQ~ 100 (223)
T 2b8t_A 67 ----------PSVEVESAPEILNYIMSN--SFNDETKVIGIDEVQF 100 (223)
T ss_dssp ----------CCEEESSTHHHHHHHHST--TSCTTCCEEEECSGGG
T ss_pred ----------cccccCCHHHHHHHHHHH--hhCCCCCEEEEecCcc
Confidence 123456666777766531 2224578999999995
No 112
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.02 E-value=0.00065 Score=55.89 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=27.1
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~ 104 (444)
.|.-.++.|++|+|||...+-.+.... . .+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~-~--------~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGI-Y--------AKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHH-H--------TTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH-H--------cCCceEEEEeccC
Confidence 344568999999999965555543333 2 2556999999754
No 113
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0094 Score=52.81 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
.+.++++.||+|+|||.++-.. +..+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v-~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDV-MDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHH-HHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH-HHHH
Confidence 3467999999999999765554 4444
No 114
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.90 E-value=0.002 Score=59.51 Aligned_cols=83 Identities=23% Similarity=0.189 Sum_probs=51.4
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (444)
-.++.|+.|+|||......+ . ....++++|+++++.++.+.+.+... .
T Consensus 163 v~~I~G~aGsGKTt~I~~~~-----~---------~~~~lVlTpT~~aa~~l~~kl~~~~~----~-------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRV-----N---------FEEDLILVPGRQAAEMIRRRANASGI----I-------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHC-----C---------TTTCEEEESCHHHHHHHHHHHTTTSC----C--------------
T ss_pred EEEEEcCCCCCHHHHHHHHh-----c---------cCCeEEEeCCHHHHHHHHHHhhhcCc----c--------------
Confidence 35899999999997543221 1 12379999999999998887754210 0
Q ss_pred HHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhH
Q 013392 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR 180 (444)
Q Consensus 138 ~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~ 180 (444)
.....-|.|.++++. +.........++||+||+-.
T Consensus 211 -----~~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~sm 245 (446)
T 3vkw_A 211 -----VATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGLM 245 (446)
T ss_dssp -----CCCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGGG
T ss_pred -----ccccceEEEeHHhhc---CCCCCCCCcCCEEEEeCccc
Confidence 001233667666543 21111112478999999983
No 115
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.85 E-value=0.0033 Score=63.06 Aligned_cols=72 Identities=21% Similarity=0.187 Sum_probs=57.3
Q ss_pred CCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
..|++-|++++.. .+.+++|.|+.|||||.+.+.-+.+.+.... ....++|+|+.|+..+.++.+++.+..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 4599999999986 4568999999999999987776666665311 1345699999999999999999888754
No 116
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.79 E-value=0.0023 Score=63.81 Aligned_cols=71 Identities=20% Similarity=0.151 Sum_probs=56.5
Q ss_pred CCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
.+++-|++++.. .+.+++|.|+.|||||.+.+.-+.+.+.... ....++|+|+.|+..+.++.+++.+..+
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 388999999986 4678999999999999987766666554411 1345699999999999999999988754
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.73 E-value=0.017 Score=51.81 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
+..+++.||+|+|||..+-.
T Consensus 37 ~~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 36799999999999976544
No 118
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.71 E-value=0.0061 Score=53.53 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=37.3
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhH--hcCCcEEEEcCCCCchhHHhHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVI--LSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~--~~~~~~il~~~tG~GKT~~~~~ 75 (444)
....+|+++.-.+...+.+...... + ....+.+..+ ...+.+++.||+|+|||..+-.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~ 70 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVEL--P-LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKA 70 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHH--H-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH--H-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 3456788888888888888544211 1 1112233332 2457899999999999976544
No 119
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.66 E-value=0.013 Score=52.41 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=18.1
Q ss_pred CccEEEEechhHhhhcchhHHHHHHHHHh
Q 013392 169 NLRWIIFDEADRILELGFGKEIEEILDIL 197 (444)
Q Consensus 169 ~~~lvV~DE~h~~~~~~~~~~~~~~~~~l 197 (444)
..+++++||+|.+........+..++...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~ 133 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAY 133 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhC
Confidence 67899999999875122334444444443
No 120
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.61 E-value=0.0028 Score=61.66 Aligned_cols=101 Identities=22% Similarity=0.310 Sum_probs=64.1
Q ss_pred CCCHHHHhHHHhHhc--CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 41 APTKVQAQAIPVILS--GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 41 ~~~~~Q~~~~~~~~~--~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
.++..|+++++.+.. ....++.|+-|.|||...-+++.. +.. .+++.+|+..-+....+ +..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~~-----------~~~vtAP~~~a~~~l~~----~~~ 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IAG-----------RAIVTAPAKASTDVLAQ----FAG 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SSS-----------CEEEECSSCCSCHHHHH----HHG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HHh-----------CcEEECCCHHHHHHHHH----Hhh
Confidence 478899999998885 345799999999999554444333 211 26888999776664333 221
Q ss_pred ccCceeeEEEeCCcchhHHHHHhcCCCcEEEeCchHHHHHHhccCccccCCccEEEEechhHhhhcchhHHHHHHHH
Q 013392 119 RFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195 (444)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~lvV~DE~h~~~~~~~~~~~~~~~~ 195 (444)
. .|-+..|+.+.. . ....+++|+||+=.+ ....+..++.
T Consensus 239 ~--------------------------~i~~~~Pd~~~~---~-----~~~~dlliVDEAAaI----p~pll~~ll~ 277 (671)
T 2zpa_A 239 E--------------------------KFRFIAPDALLA---S-----DEQADWLVVDEAAAI----PAPLLHQLVS 277 (671)
T ss_dssp G--------------------------GCCBCCHHHHHH---S-----CCCCSEEEEETGGGS----CHHHHHHHHT
T ss_pred C--------------------------CeEEeCchhhhh---C-----cccCCEEEEEchhcC----CHHHHHHHHh
Confidence 1 133446665432 1 125789999999754 3355555553
No 121
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.55 E-value=0.0056 Score=65.26 Aligned_cols=76 Identities=24% Similarity=0.224 Sum_probs=58.4
Q ss_pred cCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 37 LGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 37 ~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
++.. +++-|.+++.. .+++++|.|+.|||||.+.+.-++..+..... +....+++++++|++.+.++.+++...
T Consensus 7 ~~~~-~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~---~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 7 ADST-WTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEEN---PIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp ---C-CCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS---CCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC---CCCccceEEEeccHHHHHHHHHHHHHH
Confidence 3554 99999999987 47899999999999999877767776655221 123457999999999999999998875
Q ss_pred hc
Q 013392 117 LH 118 (444)
Q Consensus 117 ~~ 118 (444)
+.
T Consensus 81 l~ 82 (1232)
T 3u4q_A 81 LE 82 (1232)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 122
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.52 E-value=0.0027 Score=49.60 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.++.+++.||+|+|||..+-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 678899999999999975443
No 123
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.42 E-value=0.032 Score=52.22 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
..+++.||+|+|||..+-.
T Consensus 131 ~~lll~Gp~G~GKTtLa~a 149 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQS 149 (440)
T ss_dssp CCEEEECSSSSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5799999999999976544
No 124
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.38 E-value=0.004 Score=51.87 Aligned_cols=40 Identities=13% Similarity=0.166 Sum_probs=29.4
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~ 104 (444)
++-.++.|++|+|||..++-.+.... ..+.+++++-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~---------~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ---------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH---------TTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH---------HCCCeEEEEeecCC
Confidence 45568899999999976666555544 34677999998754
No 125
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.34 E-value=0.011 Score=53.06 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=37.3
Q ss_pred hccccCCccccCCCHHHHHHHHHHcCCCCCCHHHH-hHHHh-HhcCCcEEEEcCCCCchhHHhHHH
Q 013392 13 EIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQA-QAIPV-ILSGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 13 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~-~~~~~-~~~~~~~il~~~tG~GKT~~~~~~ 76 (444)
......+|+++.-.+...+.|.....+ +... +.+.. ....+.+++.||+|+|||..+-..
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~----~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 71 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVIL----PVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAV 71 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHH----HHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHH----HHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHH
Confidence 345667899998888888888654311 1100 00000 112357999999999999866543
No 126
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0088 Score=55.35 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=39.0
Q ss_pred cccCCccccCCCHHHHHHHHHHcC--CCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLG--FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~ 77 (444)
--..+|++.+-.+...+.|.+..- +..|..++... +...+.+++.||+|+|||+.+-..+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTllAkAiA 236 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLLARACA 236 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHHHHHHH
Confidence 345689999999999988865521 11222222221 1234789999999999998655433
No 127
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.014 Score=53.31 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=38.5
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCCCCHHH-HhHHHhH--hcCCcEEEEcCCCCchhHHhHHHH
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQ-AQAIPVI--LSGRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q-~~~~~~~--~~~~~~il~~~tG~GKT~~~~~~~ 77 (444)
-..+|++.+=-+...+.|++..-+ |.. -+.+..+ ...+.+++.||+|+|||+.+-..+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~----Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA 203 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIEL----PVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVA 203 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHH----HHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH----HHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHH
Confidence 457899999888888888655321 111 2233332 234789999999999998655433
No 128
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.26 E-value=0.047 Score=47.39 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCchhHHhHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~ 77 (444)
..+++.||+|+|||..+...+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 468999999999998765433
No 129
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.25 E-value=0.062 Score=44.73 Aligned_cols=19 Identities=42% Similarity=0.665 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
..+++.||+|+|||..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIA 57 (226)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3599999999999976544
No 130
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.17 E-value=0.08 Score=43.50 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
+.+++.||+|+|||..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~ 73 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA 73 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 6899999999999986544
No 131
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.00 E-value=0.034 Score=49.19 Aligned_cols=58 Identities=19% Similarity=0.317 Sum_probs=36.2
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHh--HhcCCcEEEEcCCCCchhHHhHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV--ILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~--~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
....+|++++-.+...+.|.+...+ +-.+ .+.+.. +..++.+++.||+|+|||..+-.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~--~~~~-~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQY--PVEH-PDKFLKFGMTPSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHH--HHHC-HHHHHHHCCCCCSEEEEECSSSSSHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH--HhhC-HHHHHHcCCCCCceEEEECCCCcCHHHHHHH
Confidence 3456788888888887777544211 1001 112222 23467899999999999976554
No 132
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.97 E-value=0.052 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCchhHHhHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~ 76 (444)
.+..+++.||+|+|||..+-..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~ 64 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLV 64 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHH
Confidence 3467999999999999765443
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.95 E-value=0.039 Score=50.66 Aligned_cols=21 Identities=33% Similarity=0.145 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCchhHHhHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~ 76 (444)
.+.+++.||+|+|||..+-..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l 65 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYI 65 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 346999999999999765443
No 134
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.89 E-value=0.11 Score=41.96 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchhHHhHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~ 76 (444)
...+++.||+|+|||..+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 357999999999999765543
No 135
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.75 E-value=0.059 Score=51.04 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=35.9
Q ss_pred ccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhH--hcCCcEEEEcCCCCchhHHhHH
Q 013392 14 IFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVI--LSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 14 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~--~~~~~~il~~~tG~GKT~~~~~ 75 (444)
......|+++.=.+...+.+.+.... +- ...+.+..+ .....+++.||+|+|||..+-.
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~--~l-~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAra 257 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVEL--PL-RHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHH--HH-HCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHH
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHH--Hh-hCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHH
Confidence 34566788877667777777444211 10 112233332 2446799999999999986544
No 136
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.73 E-value=0.065 Score=46.10 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=31.1
Q ss_pred CCccccCCCHHHHHHHHHHcC-CCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHH
Q 013392 18 CSFSSLGLHSTLCDQLRERLG-FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 18 ~~~~~~~l~~~i~~~l~~~~~-~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~ 76 (444)
.+|+++.-.+...+.+.+... +..+..+... .+...+.+++.||+|+|||..+-..
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la~~l 59 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLAKAV 59 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHHHHH
Confidence 467777767777666643211 1111111111 1123467899999999999765543
No 137
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.67 E-value=0.039 Score=46.74 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.+..+++.||+|+|||..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 357899999999999976544
No 138
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.11 Score=48.11 Aligned_cols=59 Identities=27% Similarity=0.310 Sum_probs=37.0
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhH--hcCCcEEEEcCCCCchhHHhHHHH
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVI--LSGRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~--~~~~~~il~~~tG~GKT~~~~~~~ 77 (444)
-..+|++.+=-+...+.|.+..-+. + -..+.+..+ ...+.+++.||+|+|||+.+-..+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~p-l--~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELP-L--VQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHH-H--HCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHH-H--hCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 3468999988888888875543211 0 011222222 234679999999999998655433
No 139
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.54 E-value=0.12 Score=45.69 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=16.0
Q ss_pred cEEEEcCCCCchhHHhHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~ 77 (444)
..++.||.|+|||..+...+
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~la 39 (305)
T 2gno_A 20 SILINGEDLSYPREVSLELP 39 (305)
T ss_dssp EEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999997665533
No 140
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.30 E-value=0.061 Score=48.76 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=32.5
Q ss_pred cccCCccccCCCHHHHHHHHHHcCC--CCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGF--EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~--~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~ 77 (444)
....+|+++.-.+...+.|.....+ ..+..++. .....+.+++.||+|+|||..+-..+
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~----~~~~~~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG----NRKPTSGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS----SCCCCCCEEEECSTTSCHHHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc----CCCCCceEEEECCCCCcHHHHHHHHH
Confidence 3456777777667766666443210 00111100 01123579999999999998765433
No 141
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.28 E-value=0.12 Score=46.03 Aligned_cols=18 Identities=50% Similarity=0.704 Sum_probs=15.3
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
.+++.||+|+|||..+-.
T Consensus 48 ~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 599999999999976554
No 142
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.26 E-value=0.13 Score=47.38 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCCchhHHhHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~ 76 (444)
.+.+++.||+|+|||..+-..
T Consensus 148 ~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 468999999999999865543
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.25 E-value=0.22 Score=45.48 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
+..+++.||+|+|||..+-.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999976544
No 144
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.20 E-value=0.11 Score=42.00 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
...+++..++|.|||.+++-.++..+-. +.+|+|+-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~---------G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH---------GKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT---------TCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEE
Confidence 3478999999999999888877777744 67788884
No 145
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.16 E-value=0.086 Score=46.92 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=15.5
Q ss_pred cEEEEcCCCCchhHHhHHH
Q 013392 58 HVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~ 76 (444)
.+++.||+|+|||..+...
T Consensus 44 ~~ll~G~~G~GKt~la~~l 62 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCL 62 (323)
T ss_dssp CEEEECSTTSSHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHH
Confidence 4999999999999765543
No 146
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.14 E-value=0.11 Score=43.70 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
.|.-+++.||+|+|||..+...+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999765554433
No 147
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.04 E-value=0.33 Score=44.94 Aligned_cols=53 Identities=28% Similarity=0.379 Sum_probs=31.1
Q ss_pred CCccEEEEechhHhh---hcchhHHHHHHHHHhcCCCCCCCCCCCcccccceeEEEEEeecchhhHHHHHh
Q 013392 168 TNLRWIIFDEADRIL---ELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKI 235 (444)
Q Consensus 168 ~~~~lvV~DE~h~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~ 235 (444)
..+++||+|++-+.. +......+..+...+.. ..-++.++|+...........
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p---------------d~vlLVlDa~~gq~a~~~a~~ 233 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP---------------DDVILVIDASIGQKAYDLASR 233 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC---------------SEEEEEEEGGGGGGGHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC---------------cceEEEEeCccchHHHHHHHH
Confidence 467899999997543 22344555555555543 455666777765444444443
No 148
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.93 E-value=0.26 Score=44.44 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=27.9
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
+...+|+++--++.+.+.+.... .. . -....+++.||+|+|||..+-.
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~-~~-~-----------~~~~~~ll~Gp~G~GKTtl~~~ 55 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLS-DQ-P-----------RDLPHLLLYGPNGTGKKTRCMA 55 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTT-TC-T-----------TCCCCEEEECSTTSSHHHHHHT
T ss_pred cCCCCHHHhcCCHHHHHHHHHHH-hh-C-----------CCCCeEEEECCCCCCHHHHHHH
Confidence 34455666655666666663221 01 0 1123489999999999975543
No 149
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.92 E-value=0.027 Score=52.80 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
..+++.||+|+|||..+-.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 3689999999999976554
No 150
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.85 E-value=0.19 Score=44.42 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCchhHHhHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~ 76 (444)
.++++.||+|+|||..+-..
T Consensus 68 ~~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46999999999999876543
No 151
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.85 E-value=0.086 Score=47.83 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCchhHHhHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~ 76 (444)
.+.+++.||+|+|||..+-..
T Consensus 117 ~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 467999999999999866543
No 152
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.85 E-value=0.18 Score=45.18 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
..+++.||+|+|||..+-.
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 5799999999999976554
No 153
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.81 E-value=0.21 Score=46.78 Aligned_cols=51 Identities=18% Similarity=0.058 Sum_probs=32.5
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~ 114 (444)
.|.-++|.|++|+|||..++..+...... .+..|+++..- .-..|+..++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~--------~g~~vl~~slE-~~~~~l~~R~~ 249 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK--------EGVGVGIYSLE-MPAAQLTLRMM 249 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--------TCCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEECC-CCHHHHHHHHH
Confidence 34567999999999998777666655432 13447776643 33445555543
No 154
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.73 E-value=0.16 Score=43.12 Aligned_cols=51 Identities=25% Similarity=0.279 Sum_probs=32.6
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
.|.-+++.||+|+|||..++..+...... +.+++++.-. ....+..+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---------~~~v~~~~~e-~~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---------GEPGIYVALE-EHPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---------TCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---------CCeEEEEEcc-CCHHHHHHHHHH
Confidence 45678999999999998766655554422 3447777644 334555555543
No 155
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.68 E-value=0.043 Score=51.49 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=33.1
Q ss_pred cccCCccccCCCHHHHHHHHHHcCC--CCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGF--EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~--~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
....+|+++.-.+...+.|.....+ ..+..++ ......+.+++.||+|+|||..+-.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHHHH
Confidence 3456777777777777777443211 0011111 0112346799999999999976554
No 156
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.66 E-value=0.053 Score=47.58 Aligned_cols=91 Identities=7% Similarity=0.027 Sum_probs=53.5
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (444)
-+.+.||+|+|||..++..+.+.... +.+.+++|+..-.++... .++.+.-...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-------g~g~~vlyId~E~s~~~~---ra~~lGvd~d---------------- 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-------YPDAVCLFYDSEFGITPA---YLRSMGVDPE---------------- 83 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-------CTTCEEEEEESSCCCCHH---HHHHTTCCGG----------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-------CCCceEEEEeccchhhHH---HHHHhCCCHH----------------
Confidence 57899999999998877766655433 235678998876555432 2333321110
Q ss_pred HHHhcCCCcEEEeCchHHHHH----HhccCccccCCccEEEEechhHhh
Q 013392 138 KARLRKGISILVATPGRLLDH----LKHTSSFLHTNLRWIIFDEADRIL 182 (444)
Q Consensus 138 ~~~~~~~~~iii~T~~~l~~~----l~~~~~~~~~~~~lvV~DE~h~~~ 182 (444)
++++..|..+... +.....+.-..+++||+|=+..+.
T Consensus 84 --------~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 --------RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --------GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --------HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 2555555443332 211111222468899999998765
No 157
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.60 E-value=0.11 Score=47.55 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
.+++.||+|+|||..+-.
T Consensus 46 ~~li~G~~G~GKTtl~~~ 63 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK 63 (389)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 699999999999976543
No 158
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.50 E-value=0.37 Score=40.43 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.4
Q ss_pred cEEEEcCCCCchhHHhHHH
Q 013392 58 HVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~ 76 (444)
.+++.||+|+|||..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999765443
No 159
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.47 E-value=0.22 Score=44.78 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=15.1
Q ss_pred EEEEcCCCCchhHHhHHH
Q 013392 59 VLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~ 76 (444)
+++.||+|+|||..+...
T Consensus 49 ~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp EEEECSSSSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 899999999999765543
No 160
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.42 E-value=0.86 Score=42.22 Aligned_cols=34 Identities=21% Similarity=0.145 Sum_probs=23.3
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
-+++.|++|+|||.++...+.... . .+.+++++.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~-~--------~G~kVllv~ 135 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQ-K--------RGYKVGVVC 135 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH-T--------TTCCEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHH-H--------CCCeEEEEe
Confidence 468899999999987766554433 2 245576665
No 161
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.31 E-value=0.38 Score=43.33 Aligned_cols=20 Identities=45% Similarity=0.579 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCchhHHhHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~ 76 (444)
.++++.||+|+|||..+-..
T Consensus 59 ~~~ll~G~~G~GKT~la~~l 78 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILAL 78 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45999999999999765443
No 162
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.13 E-value=0.042 Score=55.04 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=37.5
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
.....|++.+..++..+.|++...+.-.++.+...+ .+...+.+++.||+|+|||+.+-.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lAka 530 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLAKA 530 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHHHH
Confidence 345689999999999999865543321122111100 012346799999999999975443
No 163
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.09 E-value=0.16 Score=51.10 Aligned_cols=99 Identities=11% Similarity=0.120 Sum_probs=74.8
Q ss_pred CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
.+.|.....-.+.... ..+.++++.++++..+...++.+.+.... .+.++..++|+++..++...
T Consensus 399 GSGKTlvall~il~~l--~~g~qvlvlaPtr~La~Q~~~~l~~~~~~-------------~gi~v~~l~G~~~~~~r~~~ 463 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNY--EAGFQTAFMVPTSILAIQHYRRTVESFSK-------------FNIHVALLIGATTPSEKEKI 463 (780)
T ss_dssp SSSHHHHHHHHHHHHH--HHTSCEEEECSCHHHHHHHHHHHHHHHTC-------------SSCCEEECCSSSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHhhh-------------cCceEEEEeCCCCHHHHHHH
Confidence 3456554443333222 34679999999999999988887765311 16789999999999999999
Q ss_pred HHHhhcCCCcEEEEecc-cccCCCCCCCcEEEEcc
Q 013392 379 FGAFKTEKKALLLSTDV-AARGLDFPKVKCIIQYD 412 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~-~~~G~di~~~~~vi~~~ 412 (444)
++.+.+|+.+|+|+|.. +...+++.+++.||.-.
T Consensus 464 ~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 464 KSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp HHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEES
T ss_pred HHHHhcCCCCEEEECHHHHhhhhhccCCceEEecc
Confidence 99999999999999975 45667888898887644
No 164
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.07 E-value=0.32 Score=45.72 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=31.5
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l 113 (444)
.|.-+++.|++|+|||..++..+...... .+..|+|+... .-..|...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--------~g~~Vl~~s~E-~s~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--------TNENVAIFSLE-MSAQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--------SSCCEEEEESS-SCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEECC-CCHHHHHHHH
Confidence 45568999999999998777666555432 13347777643 2234444443
No 165
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.01 E-value=0.12 Score=46.10 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=33.6
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
.|.-+++.|++|+|||..++..+...... +..|+|+..- .-..|...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~---------g~~Vl~fSlE-ms~~ql~~Rlls 95 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALND---------DRGVAVFSLE-MSAEQLALRALS 95 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT---------TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCC-CCHHHHHHHHHH
Confidence 45568999999999998777666555432 4457776643 445555555543
No 166
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.99 E-value=0.23 Score=43.93 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=28.4
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~ 76 (444)
+...+|+++--++...+.+.+. +.. -....+++.||+|+|||..+...
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~--l~~------------~~~~~~ll~G~~G~GKt~la~~l 58 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGY--VER------------KNIPHLLFSGPPGTGKTATAIAL 58 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTT--TTT------------TCCCCEEEESSSSSSHHHHHHHH
T ss_pred cCCCCHHHHhCCHHHHHHHHHH--HhC------------CCCCeEEEECcCCcCHHHHHHHH
Confidence 4445566655556666655322 110 01225999999999999765543
No 167
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.60 E-value=0.13 Score=46.51 Aligned_cols=45 Identities=20% Similarity=0.263 Sum_probs=30.6
Q ss_pred HHHhHhc------CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 49 AIPVILS------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 49 ~~~~~~~------~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
.++.++. +.-++|.|++|+|||..++..+...... +.+++|+...
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~---------g~~vlyi~~E 111 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA---------GGTCAFIDAE 111 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEESS
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC---------CCeEEEEECC
Confidence 4555554 3567999999999998777665554432 3457877754
No 168
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.50 E-value=0.11 Score=57.12 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=34.3
Q ss_pred HHhHhc------CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHH
Q 013392 50 IPVILS------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (444)
Q Consensus 50 ~~~~~~------~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L 105 (444)
++.++. ++.+++.||+|+|||..+...+.+... .+.+++|+.....+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~---------~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT---------TTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCcEEEEEccccc
Confidence 555555 678999999999999988776665543 35668888766433
No 169
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.26 E-value=4.1 Score=36.26 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=21.7
Q ss_pred CHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHH
Q 013392 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 43 ~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
|..+.+.+.. +....++|.||.|+|||..+..
T Consensus 18 R~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~ 49 (357)
T 2fna_A 18 REKEIEKLKG-LRAPITLVLGLRRTGKSSIIKI 49 (357)
T ss_dssp CHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHH
T ss_pred hHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHH
Confidence 4444444544 4446789999999999975443
No 170
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.18 E-value=0.082 Score=47.66 Aligned_cols=45 Identities=24% Similarity=0.374 Sum_probs=30.6
Q ss_pred HHHhHhc------CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 49 AIPVILS------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 49 ~~~~~~~------~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
.++.++. |+-+++.|++|+|||..++..+...... +.+++|+.-.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---------g~~vlyi~~E 98 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---------GGIAAFIDAE 98 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEECC
Confidence 4555554 4568999999999998777665554432 4457877654
No 171
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.18 E-value=0.23 Score=46.83 Aligned_cols=52 Identities=12% Similarity=0.173 Sum_probs=40.2
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
.+....+.|-||+|||+++...+.. . +..+|+|+|+...+.|+++.++.+++
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~-~-----------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAER-H-----------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHH-S-----------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHH-h-----------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 4556899999999999864443322 1 22389999999999999999999865
No 172
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.11 E-value=0.3 Score=41.44 Aligned_cols=24 Identities=42% Similarity=0.458 Sum_probs=18.5
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHH
Q 013392 54 LSGRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 54 ~~~~~~il~~~tG~GKT~~~~~~~ 77 (444)
..|.-+.+.||+|+|||..+...+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 356778999999999997655443
No 173
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.96 E-value=0.43 Score=39.53 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPII 78 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~ 78 (444)
.|.-+++.|++|+|||..+...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456689999999999987665444
No 174
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.95 E-value=0.081 Score=47.79 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=31.1
Q ss_pred HHHhHhc------CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 49 AIPVILS------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 49 ~~~~~~~------~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
.++.++. ++-+++.|++|+|||..++..+...... +.+++|+...
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~---------g~~vlyid~E 100 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAE 100 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEeCC
Confidence 4555553 4568999999999998877766554433 3458887763
No 175
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.90 E-value=0.079 Score=47.71 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=31.3
Q ss_pred hHHHhHhc------CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHH
Q 013392 48 QAIPVILS------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (444)
Q Consensus 48 ~~~~~~~~------~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L 105 (444)
..++.++. |.-++|.||+|+|||..++..+...... +.+++++.....+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---------gg~VlyId~E~s~ 101 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---------GGVAAFIDAEHAL 101 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEESSCCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---------CCeEEEEeccccc
Confidence 34555554 3557899999999997666555443322 4458887765433
No 176
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.099 Score=48.43 Aligned_cols=60 Identities=23% Similarity=0.292 Sum_probs=38.4
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhH--hcCCcEEEEcCCCCchhHHhHHHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVI--LSGRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~--~~~~~~il~~~tG~GKT~~~~~~~ 77 (444)
-...+|++.+=-+...+.|.+..-+. + . ..+.+..+ ...+.+++.||+|+|||+.+-..+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~p-l-~-~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELP-L-K-NPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHH-H-H-CHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHH-H-h-CHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 44678999998888888885553221 0 0 11233322 234789999999999998765433
No 177
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.84 E-value=0.8 Score=42.16 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.1
Q ss_pred CcEEE--EcCCCCchhHHhHH
Q 013392 57 RHVLV--NAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il--~~~tG~GKT~~~~~ 75 (444)
..+++ .||+|+|||..+-.
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHH
Confidence 45788 89999999976544
No 178
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.63 E-value=0.094 Score=40.46 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCCchhHHhH
Q 013392 54 LSGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 54 ~~~~~~il~~~tG~GKT~~~~ 74 (444)
..+.++++.||+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 366789999999999997654
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.60 E-value=0.45 Score=40.11 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
.|.-+.+.||+|+|||..+...+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4567899999999999876654443
No 180
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.53 E-value=0.085 Score=40.60 Aligned_cols=20 Identities=10% Similarity=0.087 Sum_probs=16.8
Q ss_pred hcCCcEEEEcCCCCchhHHh
Q 013392 54 LSGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 54 ~~~~~~il~~~tG~GKT~~~ 73 (444)
..+.++++.|++|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 46678999999999999643
No 181
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.31 E-value=0.14 Score=47.52 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=39.3
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhH--hcCCcEEEEcCCCCchhHHhHHHH
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVI--LSGRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~--~~~~~~il~~~tG~GKT~~~~~~~ 77 (444)
-..+|++.+=-+.+.+.|++..-+. + ...+.+..+ ...+.+++.||+|+|||+.+-..+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~p-l--~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA 264 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELP-L--LSPERFATLGIDPPKGILLYGPPGTGKTLCARAVA 264 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHH-H--HCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHH-h--cCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHH
Confidence 3578999999999999986553211 0 112333332 245789999999999998665433
No 182
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.08 E-value=1.8 Score=39.09 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.3
Q ss_pred cEEEEcCCCCchhHHhHHH
Q 013392 58 HVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~ 76 (444)
.+++.||+|+|||..+...
T Consensus 40 ~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999766543
No 183
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.70 E-value=0.24 Score=40.37 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHhHHHhHhcC----CcEEEEcCCCCchhHHhHH
Q 013392 27 STLCDQLRERLGFEAPTKVQAQAIPVILSG----RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~----~~~il~~~tG~GKT~~~~~ 75 (444)
..|.+.|+-. |++ +-.. ...+..+..+ +.+++.||+|+|||..+..
T Consensus 28 ~~I~~~l~yq-~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 28 RPIVQFLRYQ-QIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHHHHT-TCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHHHHHc-CcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 6788888533 544 5555 5556666644 3489999999999976543
No 184
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.63 E-value=0.32 Score=42.97 Aligned_cols=24 Identities=17% Similarity=0.193 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
++++++.||+|+|||..+...+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999876544433
No 185
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.43 E-value=0.67 Score=41.24 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=31.8
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHH-HHHHHHHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL-CLQVYEILHK 115 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L-~~q~~~~l~~ 115 (444)
|.-+++.|++|+|||..++..+........ ..+.+.+++|+.-...+ ..+..+.+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~---~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPE---KGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGG---GTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccc---cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999877665544221100 00124568887754332 3344444433
No 186
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.94 E-value=0.22 Score=45.71 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=38.2
Q ss_pred cccCCccccCCCHHHHHHHHHHcC--CCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHHHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLG--FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~~~ 77 (444)
.-..+|++.+=-+...+.|.+..- +..|-.|+... +...+.+++.||+|+|||+.+-..+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPGTGKTlLAkAiA 237 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPGTGKTLLAKAVA 237 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTTTTHHHHHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCCchHHHHHHHHH
Confidence 456789999877777777755532 22232222221 1234789999999999998665443
No 187
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.87 E-value=0.63 Score=43.00 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=65.0
Q ss_pred ccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEeccc
Q 013392 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA 396 (444)
Q Consensus 317 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~~ 396 (444)
..+.+++|.++++..+..+.+.++.... .+..+..++|+.+..++....+.+..|+.+|+|+|+-.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~--------------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~ 127 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD--------------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQF 127 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC--------------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc--------------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHH
Confidence 4567999999999999999999887532 17789999999999998888899999999999999742
Q ss_pred c----cCCCCCCCcEEEEcc
Q 013392 397 A----RGLDFPKVKCIIQYD 412 (444)
Q Consensus 397 ~----~G~di~~~~~vi~~~ 412 (444)
- .-++..++++||.-.
T Consensus 128 l~~~l~~~~~~~~~~iViDE 147 (414)
T 3oiy_A 128 VSKNREKLSQKRFDFVFVDD 147 (414)
T ss_dssp HHHCHHHHTTCCCSEEEESC
T ss_pred HHHHHHHhccccccEEEEeC
Confidence 1 114455778777543
No 188
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.94 E-value=0.87 Score=40.85 Aligned_cols=44 Identities=11% Similarity=-0.047 Sum_probs=27.0
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~ 103 (444)
.-+++.|++|+|||..++..+........ ..+.+.+++|+.-..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~---~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGA---GGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBT---TTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccc---cCCCCCeEEEEECCC
Confidence 45799999999999876665544222100 001345688877543
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.46 E-value=0.28 Score=43.68 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=35.1
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHH-hHHHh-HhcCCcEEEEcCCCCchhHHhHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQA-QAIPV-ILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~-~~~~~-~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
....+|++++=.+...+.|.+...+ |.+. +.+.. ....+.+++.||+|+|||..+-.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~----p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVIL----PIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHH----HHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH----HHhCHHHHhCCCCCCceEEEECCCCccHHHHHHH
Confidence 3457899998888888888544211 1100 00111 11236799999999999976554
No 190
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.34 E-value=0.63 Score=42.92 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=23.2
Q ss_pred HHHHhHHHhHh--cCCcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 44 KVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 44 ~~Q~~~~~~~~--~~~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
+-+..++..++ .+.-+++.||||+|||.. +.+++..+
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 34555555544 334578999999999964 33344443
No 191
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.17 E-value=0.62 Score=46.75 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=31.2
Q ss_pred cccCCccccCCCHHHHHHHHHHcC--CCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLG--FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~ 74 (444)
....+|++.+=-+...+.|++..- +..|..++.-. +..-+.+++.||+|+|||+.+-
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g---~~~p~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG---VKPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCC---CCCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcC---CCCCCeEEEECCCCCCHHHHHH
Confidence 455678877655555555533321 11122221110 0123679999999999997654
No 192
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=88.71 E-value=0.87 Score=36.15 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=41.3
Q ss_pred HHHHhHHHhHhcC--CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHH
Q 013392 44 KVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (444)
Q Consensus 44 ~~Q~~~~~~~~~~--~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q 108 (444)
+-|..++..++.. .-.++.++-|++|+...+..++..... .|.+|.+|+|+..-...
T Consensus 37 ~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--------~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--------QGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--------TTCCEEEECSTTHHHHH
T ss_pred ccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--------cCeEEEEEcCchHHHHH
Confidence 5688888888744 346888999999998865555554444 57779999999555443
No 193
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.65 E-value=0.92 Score=41.05 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCchhHHhHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~ 76 (444)
...++++.||+|+|||..+-..
T Consensus 50 ~~~~vll~GppGtGKT~la~~i 71 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETL 71 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3467999999999999866543
No 194
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.51 E-value=0.63 Score=39.76 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCCCCHHH-HhHHHhHhcCC-----cEEEEcCCCCchhHHhHH
Q 013392 27 STLCDQLRERLGFEAPTKVQ-AQAIPVILSGR-----HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~~~~Q-~~~~~~~~~~~-----~~il~~~tG~GKT~~~~~ 75 (444)
.++.+.|+ ..|++ +.+ ..++..+++++ .+++.||+|+|||+.+..
T Consensus 73 n~i~~~l~-~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~a 123 (267)
T 1u0j_A 73 NRIYKILE-LNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEA 123 (267)
T ss_dssp CHHHHHHH-HTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHH-HcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHH
Confidence 57888884 33665 444 33455566543 489999999999986663
No 195
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.41 E-value=0.49 Score=44.80 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=21.6
Q ss_pred HhHHHhHhcCCcEEEEcCCCCchhHHhH
Q 013392 47 AQAIPVILSGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 47 ~~~~~~~~~~~~~il~~~tG~GKT~~~~ 74 (444)
..+...+..+.++++.||+|+|||..+-
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHH
Confidence 3444555688999999999999997543
No 196
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.67 E-value=2.3 Score=38.89 Aligned_cols=44 Identities=11% Similarity=-0.017 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
|.-+.|.||+|+|||..+...+........ ..+.+.+++++.-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~---~Gg~~~~viyid~E 221 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLD---IGGGEGKCLYIDTE 221 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGG---GTCCSSEEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcc---cCCCCCcEEEEeCC
Confidence 355799999999999766543333222110 00134567777643
No 197
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=87.60 E-value=1.2 Score=47.09 Aligned_cols=80 Identities=11% Similarity=0.152 Sum_probs=63.8
Q ss_pred cCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEec-cc
Q 013392 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD-VA 396 (444)
Q Consensus 318 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~-~~ 396 (444)
.+.+++|.++++..+...++.+.+.... .+..+..+++..+..++...++.+..|..+|+|+|. .+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~-------------~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll 717 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-------------WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 717 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT-------------TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc-------------CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH
Confidence 3558899999999888888877654211 156788899999999999999999999999999996 45
Q ss_pred ccCCCCCCCcEEEE
Q 013392 397 ARGLDFPKVKCIIQ 410 (444)
Q Consensus 397 ~~G~di~~~~~vi~ 410 (444)
...+.+.+++.||.
T Consensus 718 ~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 718 QSDVKFKDLGLLIV 731 (1151)
T ss_dssp HSCCCCSSEEEEEE
T ss_pred hCCccccccceEEE
Confidence 56678888888775
No 198
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.46 E-value=5 Score=32.92 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=62.3
Q ss_pred CCcHHHHHH-HHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 300 GSRLAVLLS-ILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 300 ~~k~~~l~~-~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
..|.....- ++........+.+++|.++++..+..+.+.+++.... .++..+..++|+.+.....+.
T Consensus 62 sGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~------------~~~~~v~~~~g~~~~~~~~~~ 129 (220)
T 1t6n_A 62 MGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKY------------MPNVKVAVFFGGLSIKKDEEV 129 (220)
T ss_dssp SCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTT------------STTCCEEEESCCSCHHHHHHH
T ss_pred CchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhh------------CCCceEEEEeCCCChHHHHHH
Confidence 345544333 3333322223458999999999999998887765321 126678889998877655433
Q ss_pred HHHhhcCCCcEEEEecc-c-----ccCCCCCCCcEEEEc
Q 013392 379 FGAFKTEKKALLLSTDV-A-----ARGLDFPKVKCIIQY 411 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~-~-----~~G~di~~~~~vi~~ 411 (444)
+..+..+|+|+|.- + ...+++.+++.+|.-
T Consensus 130 ---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 130 ---LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp ---HHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred ---HhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 44567799999963 2 234667788887753
No 199
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.46 E-value=0.76 Score=43.78 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=33.1
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~ 114 (444)
.|.-++|.|++|+|||..++..+.+.... .+.+++++.-- .-..|...++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~--------~g~~vl~~s~E-~s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA--------MGKKVGLAMLE-ESVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT--------SCCCEEEEESS-SCHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh--------cCCcEEEEecc-CCHHHHHHHHH
Confidence 45668999999999998777766554432 14457777643 33455555543
No 200
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.06 E-value=0.76 Score=38.15 Aligned_cols=26 Identities=38% Similarity=0.524 Sum_probs=20.6
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhc
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQS 83 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~ 83 (444)
++++.++.|+|||..++..+......
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 58999999999999877766665544
No 201
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.87 E-value=0.54 Score=37.51 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCchhHHhHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~ 77 (444)
...+++.||+|+|||..+...+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 4578999999999997665433
No 202
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.83 E-value=0.42 Score=40.48 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=32.7
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
|.-+++.|++|+|||..++..+.+.... .+..++++.-. .-..+..+.+...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~--------~~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE--------YGEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH--------HCCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCCceeeccc-CCHHHHHHHHHHc
Confidence 4568999999999998777666554433 13347776643 3345555555443
No 203
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.77 E-value=0.83 Score=37.58 Aligned_cols=36 Identities=22% Similarity=0.137 Sum_probs=27.9
Q ss_pred CCCCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHh
Q 013392 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~ 73 (444)
.+..-+.-|..+++.+..|.-+.+.||.|+|||...
T Consensus 4 ~i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 4 VIRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred ccccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 344334456778888888999999999999999643
No 204
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.75 E-value=1 Score=39.43 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
..++++.||+|+|||..+-.
T Consensus 50 ~~~vll~G~~GtGKT~la~~ 69 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARR 69 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 56899999999999976554
No 205
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=86.64 E-value=1.9 Score=45.34 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=72.6
Q ss_pred CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
...|.......+.... ..+.++||.++++..+..+.+.+..... .+..+..++|+.+..++...
T Consensus 103 GSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~~--------------~~i~v~~l~Gg~~~~er~~~ 166 (1104)
T 4ddu_A 103 GVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLAD--------------EKVKIFGFYSSMKKEEKEKF 166 (1104)
T ss_dssp TCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTSC--------------TTSCEEEECTTCCTTHHHHH
T ss_pred CCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhhC--------------CCCeEEEEeCCCCHHHHHHH
Confidence 3456664444433332 4567999999999999999999988531 17789999999999888888
Q ss_pred HHHhhcCCCcEEEEecc-ccc---CCCCCCCcEEEEcc
Q 013392 379 FGAFKTEKKALLLSTDV-AAR---GLDFPKVKCIIQYD 412 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~-~~~---G~di~~~~~vi~~~ 412 (444)
.+.+.+|+.+|+|+|+- +.. -++..++++||.-.
T Consensus 167 ~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 167 EKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp HHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESC
T ss_pred HHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeC
Confidence 99999999999999963 211 14456788887643
No 206
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=86.34 E-value=0.24 Score=42.66 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=32.5
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhH--hcCCcEEEEcCCCCchhHHhHHH
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVI--LSGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~--~~~~~~il~~~tG~GKT~~~~~~ 76 (444)
...+|+++.-.+...+.+.+...+ +. ..+.+..+ ...+.+++.||+|+|||..+-..
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~--~~--~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~l 64 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDF--LK--YPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 64 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHH--HH--CHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--HH--ChHHHHHCCCCCCceEEEECCCCCcHHHHHHHH
Confidence 345677776666666666433211 00 01122222 12456899999999999866543
No 207
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=86.12 E-value=0.22 Score=43.16 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=30.6
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCCCCHHH-HhHHHhHh--cCCcEEEEcCCCCchhHHhH
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQ-AQAIPVIL--SGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q-~~~~~~~~--~~~~~il~~~tG~GKT~~~~ 74 (444)
-..+|++++-.+.+.+.|.... ..++. .+++..+- -.+.+++.||+|+|||..+-
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i----~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI----LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp -------CCHHHHHHHHHHHHH----THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH----HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHH
Confidence 3567999988888888885542 12221 23444332 23459999999999997543
No 208
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.10 E-value=1.5 Score=38.75 Aligned_cols=52 Identities=17% Similarity=0.005 Sum_probs=34.4
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
.|.-++|.|++|+|||..++..+...... +..++++..- .-..|+..++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~---------g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTT---------TCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------CCeEEEEECC-CCHHHHHHHHHHH
Confidence 45668999999999998777666555433 2457777643 4455555555543
No 209
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=85.98 E-value=1.5 Score=46.53 Aligned_cols=61 Identities=21% Similarity=0.166 Sum_probs=45.5
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCC---CCCCCCCceEEEEeccHHHHHHHHHHHHHHhc
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSP---RIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~---~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~ 118 (444)
..+|.|+.|||||.+...-++..+..... ........++|+|+=|++-+.++.+++.+.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 45999999999999887777777753210 00012345799999999999999999887654
No 210
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.72 E-value=1 Score=41.88 Aligned_cols=44 Identities=32% Similarity=0.431 Sum_probs=29.4
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~ 107 (444)
...++++.|+||+|||... ..++..+.. .+..++|+=|.-+...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~--------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL--------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH--------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH--------CCCcEEEEeCCCchhH
Confidence 4568999999999999864 334443333 2445777777766653
No 211
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.60 E-value=0.45 Score=38.58 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.++.+++.||||+|||..++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALE 53 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456689999999999965543
No 212
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.50 E-value=0.53 Score=41.99 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=19.8
Q ss_pred HhHhcCCcEEEEcCCCCchhHHhHH
Q 013392 51 PVILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 51 ~~~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
..+..+.++++.||+|+|||..+-.
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHHH
Confidence 3445788999999999999976543
No 213
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.20 E-value=0.71 Score=41.59 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
.+..+++.||||+|||.. +.+++..+
T Consensus 122 ~~g~i~I~GptGSGKTTl-L~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT-LAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHhcc
Confidence 445689999999999964 33344443
No 214
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=85.12 E-value=1 Score=39.43 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=18.6
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
++-+++.|++|+|||.++...+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567889999999998766554443
No 215
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=85.09 E-value=6.1 Score=31.90 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=60.0
Q ss_pred CCcHHH-HHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 300 GSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 300 ~~k~~~-l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
..|... +..++........+.+++|.++++..+..+.+.+.+.... .++..+..++|+.+..+....
T Consensus 51 sGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~------------~~~~~~~~~~g~~~~~~~~~~ 118 (206)
T 1vec_A 51 TGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKH------------MGGAKVMATTGGTNLRDDIMR 118 (206)
T ss_dssp STTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTT------------SSSCCEEEECSSSCHHHHHHH
T ss_pred CchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhh------------cCCceEEEEeCCccHHHHHHh
Confidence 345543 3344444333344568999999999999998888765321 125677888888876544322
Q ss_pred HHHhhcCCCcEEEEecc-----ccc-CCCCCCCcEEEE
Q 013392 379 FGAFKTEKKALLLSTDV-----AAR-GLDFPKVKCIIQ 410 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~-----~~~-G~di~~~~~vi~ 410 (444)
+ .+..+|+|+|.- +.. .+++.+++.+|.
T Consensus 119 ---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 119 ---L-DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp ---T-TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred ---c-CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 2 356789999962 222 346677888775
No 216
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.00 E-value=0.48 Score=42.05 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCchhHHhHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~ 77 (444)
+-++|.||||+|||..+...+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458999999999997665533
No 217
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.88 E-value=0.85 Score=49.64 Aligned_cols=92 Identities=18% Similarity=0.164 Sum_probs=56.6
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchh
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS 135 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (444)
|+-+.+.+|.|+|||..++..+.+.... +..++|+.+--+|...+ +++++-+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~---------g~~~~~i~~e~~~~~~~---~~~~Gv~~~-------------- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAEHALDPIY---ARKLGVDID-------------- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEECTTSCCCHHH---HHHTTCCGG--------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc---------CCeEEEEecCCCCCHHH---HHHcCCCHH--------------
Confidence 3568999999999999888766654433 66689988876776665 444432211
Q ss_pred HHHHHhcCCCcEEEeCchHHHHHHhcc-CccccCCccEEEEechhHhhh
Q 013392 136 KEKARLRKGISILVATPGRLLDHLKHT-SSFLHTNLRWIIFDEADRILE 183 (444)
Q Consensus 136 ~~~~~~~~~~~iii~T~~~l~~~l~~~-~~~~~~~~~lvV~DE~h~~~~ 183 (444)
+++++-|+.-...+.-. ....-..+++||+|.+-.+..
T Consensus 1485 ----------~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 ----------NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ----------GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ----------HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 26666664322211100 111124688999999876543
No 218
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.81 E-value=1.1 Score=40.91 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=27.7
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~ 104 (444)
.+.++++.|+||+|||...-..+.... . .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~--------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-M--------QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-T--------TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-H--------CCCEEEEEeCCcC
Confidence 567899999999999976554444333 2 2445777767543
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.78 E-value=0.85 Score=39.11 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 013392 55 SGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~ 74 (444)
.+..+++.|++|+|||..+-
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 56789999999999997544
No 220
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=84.33 E-value=2.3 Score=35.67 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=52.7
Q ss_pred CcHHH-HHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHH
Q 013392 301 SRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (444)
Q Consensus 301 ~k~~~-l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 379 (444)
.|... +..++........+.+++|.++++..+..+.+.++..... .+..+....|+.+... ..
T Consensus 79 GKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~---~~ 142 (237)
T 3bor_A 79 GKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDY-------------MGATCHACIGGTNVRN---EM 142 (237)
T ss_dssp HHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-------------TTCCEEEECC-----------
T ss_pred cHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhh-------------cCceEEEEECCCchHH---HH
Confidence 34443 3344444332335679999999999999999888765321 1445666666554332 23
Q ss_pred HHhhcCCCcEEEEec-----cccc-CCCCCCCcEEEE
Q 013392 380 GAFKTEKKALLLSTD-----VAAR-GLDFPKVKCIIQ 410 (444)
Q Consensus 380 ~~f~~g~~~iLi~t~-----~~~~-G~di~~~~~vi~ 410 (444)
+.+..+..+|+|+|+ .+.. .+++..++.||.
T Consensus 143 ~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 143 QKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp -----CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred HHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 445567789999994 2333 356677887775
No 221
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=83.97 E-value=0.82 Score=37.22 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCCchhHHhHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~ 76 (444)
.++.+++.|++|+|||..+-..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHH
Confidence 5678999999999999765543
No 222
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=83.97 E-value=0.8 Score=36.66 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCchhHHhHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~ 76 (444)
.+.+++.|++|+|||..+-..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999866553
No 223
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.69 E-value=0.68 Score=40.50 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCchhHHhHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~ 77 (444)
+.+++.||+|+|||..+-..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA 57 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467899999999998655433
No 224
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=83.23 E-value=0.76 Score=40.19 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=15.6
Q ss_pred cEEEEcCCCCchhHHhHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~ 77 (444)
-++|.||||+|||..+...+
T Consensus 12 ~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 46889999999997665543
No 225
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=83.15 E-value=0.78 Score=36.67 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 013392 55 SGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~ 73 (444)
.|+-+++.||+|+|||..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667899999999999643
No 226
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=83.14 E-value=5.7 Score=33.51 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=61.2
Q ss_pred CCcHHH-HHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 300 GSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 300 ~~k~~~-l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
..|... +..++........+.+++|.++++..+..+.+.+++... ..+..+..++|+.+...+...
T Consensus 91 sGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~-------------~~~~~~~~~~g~~~~~~~~~~ 157 (249)
T 3ber_A 91 SGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS-------------SIGVQSAVIVGGIDSMSQSLA 157 (249)
T ss_dssp SCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHG-------------GGTCCEEEECTTSCHHHHHHH
T ss_pred CCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhc-------------cCCeeEEEEECCCChHHHHHH
Confidence 345443 333444433334456899999999999999887766421 115678888888876654433
Q ss_pred HHHhhcCCCcEEEEecc-c----c--cCCCCCCCcEEEEc
Q 013392 379 FGAFKTEKKALLLSTDV-A----A--RGLDFPKVKCIIQY 411 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~-~----~--~G~di~~~~~vi~~ 411 (444)
+ .+..+|+|+|.- + . .++++..++.||.-
T Consensus 158 ~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 158 L----AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp H----HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred h----cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 3 246789999952 1 1 35677888887753
No 227
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=83.04 E-value=0.66 Score=40.68 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCchhHHhHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~ 76 (444)
+-++|.||||+|||..+...
T Consensus 4 ~~i~i~GptgsGKt~la~~L 23 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVML 23 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHH
Confidence 34688999999999766543
No 228
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.03 E-value=0.94 Score=41.12 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchhHHh
Q 013392 54 LSGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 54 ~~~~~~il~~~tG~GKT~~~ 73 (444)
..+..+++.||||+|||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35667899999999999643
No 229
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.01 E-value=1.1 Score=42.65 Aligned_cols=31 Identities=19% Similarity=0.089 Sum_probs=21.3
Q ss_pred CCHHHHhHHHh-HhcCCcEEEEcCCCCchhHH
Q 013392 42 PTKVQAQAIPV-ILSGRHVLVNAATGTGKTVA 72 (444)
Q Consensus 42 ~~~~Q~~~~~~-~~~~~~~il~~~tG~GKT~~ 72 (444)
+.+.+.+.+.. +..+..+++.||||||||..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 33444444433 34778899999999999953
No 230
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=82.82 E-value=4.3 Score=33.68 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=62.8
Q ss_pred CCcHHH-HHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 300 GSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 300 ~~k~~~-l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
..|... +..++........+.+++|.++++..+..+.+.++..... ..+..+..++|+.+...+...
T Consensus 72 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~------------~~~~~~~~~~g~~~~~~~~~~ 139 (230)
T 2oxc_A 72 TGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIK------------MEGLECHVFIGGTPLSQDKTR 139 (230)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT------------STTCCEEEECTTSCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcc------------cCCceEEEEeCCCCHHHHHHh
Confidence 445544 4445555443445679999999999999999888775321 125678889998887655443
Q ss_pred HHHhhcCCCcEEEEecc-c-----ccCCCCCCCcEEEE
Q 013392 379 FGAFKTEKKALLLSTDV-A-----ARGLDFPKVKCIIQ 410 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~-~-----~~G~di~~~~~vi~ 410 (444)
+ ...+|+|+|.- + ...+++.+++.+|.
T Consensus 140 ~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 140 L-----KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp T-----TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred c-----cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 3 25789999873 2 12456667777765
No 231
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.78 E-value=0.75 Score=40.23 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=34.8
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHh-cCCcEEEEcCCCCchhHHhHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~-~~~~~il~~~tG~GKT~~~~~ 75 (444)
....+|+++.=.+...+.+.........++ +.+..+. ..+.+++.||+|+|||..+-.
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRP---ELFTGLRAPAKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCG---GGSCGGGCCCSEEEEESSSSSCHHHHHHH
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCH---HHHhcCCCCCCeEEEECcCCCCHHHHHHH
Confidence 345678888878888887754421100000 0111111 357899999999999976544
No 232
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=81.81 E-value=1 Score=35.89 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.++.+++.|++|+|||..+-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 456799999999999976554
No 233
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=81.63 E-value=4.2 Score=32.90 Aligned_cols=31 Identities=29% Similarity=0.280 Sum_probs=20.4
Q ss_pred EEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 61 VNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 61 l~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
.....|.|||.+++..+...... +.+|+++=
T Consensus 7 ~s~kgG~GKTt~a~~la~~la~~---------g~~vlliD 37 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIATALSRS---------GYNIAVVD 37 (206)
T ss_dssp CCSSTTSSHHHHHHHHHHHHHHT---------TCCEEEEE
T ss_pred EeCCCCccHHHHHHHHHHHHHHC---------CCeEEEEE
Confidence 34567899999887766655533 44566654
No 234
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=81.57 E-value=0.94 Score=37.19 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 013392 55 SGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~ 74 (444)
.++-+++.||+|+|||..+-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 45668899999999997543
No 235
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=81.45 E-value=0.8 Score=39.23 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCCchhHHh
Q 013392 54 LSGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 54 ~~~~~~il~~~tG~GKT~~~ 73 (444)
..|.-+.+.||||+|||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 46777899999999999643
No 236
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=81.45 E-value=1 Score=38.35 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=15.0
Q ss_pred cEEEEcCCCCchhHHhHHH
Q 013392 58 HVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~ 76 (444)
-+++.||+|+|||..+...
T Consensus 3 li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 3689999999999765543
No 237
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=81.44 E-value=3.3 Score=47.54 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCCCCHHH----HhHHHhHhcCCcEEEEcCCCCchhHHhHH
Q 013392 27 STLCDQLRERLGFEAPTKVQ----AQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 27 ~~i~~~l~~~~~~~~~~~~Q----~~~~~~~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
+.+.+.+ ...|+. +.+.+ .+.++.+..++.++++||||+|||.++-.
T Consensus 892 ~~i~~~~-~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 892 QCLKDAG-QRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHH-HHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHH-HHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 4455666 444886 77777 34455556788999999999999986543
No 238
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=81.41 E-value=1 Score=38.39 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=33.2
Q ss_pred cccCCccccCCCHHHHHHHHHHcCC-CCCCHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGF-EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~-~~~~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
....+|+++.-.+...+.+.+...+ ..+..++... ....+.+++.||+|+|||..+-.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la~~ 64 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLAKA 64 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHHHH
Confidence 3456888888888877777433111 1111111110 11245699999999999976543
No 239
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=81.33 E-value=1.1 Score=36.70 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=18.1
Q ss_pred HhcCCcEEEEcCCCCchhHHhHH
Q 013392 53 ILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 53 ~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
+..++-+++.||+|+|||..+-.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHH
Confidence 34677899999999999975443
No 240
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=81.33 E-value=0.93 Score=41.01 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCchhHHhHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~ 76 (444)
+.+++.||+|+|||..+-..
T Consensus 71 ~~vLl~GppGtGKT~la~~l 90 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGM 90 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57999999999999865543
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=81.33 E-value=0.7 Score=36.49 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
-+++.|++|+|||..+-.
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999976554
No 242
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=81.14 E-value=1 Score=39.58 Aligned_cols=21 Identities=38% Similarity=0.533 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
...++++.|++|+|||..+-.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHH
Confidence 467899999999999976543
No 243
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=81.12 E-value=3 Score=48.53 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHcCCCCCCHHHH----hHHHhHhcCCcEEEEcCCCCchhHHhHH
Q 013392 26 HSTLCDQLRERLGFEAPTKVQA----QAIPVILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 26 ~~~i~~~l~~~~~~~~~~~~Q~----~~~~~~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
.+.+.+.+ ...|+. +.+.|. +.++.+..++.++++||||+|||.++-.
T Consensus 874 ~~ai~~~~-~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 874 RKKIQEIA-KQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHH-HHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHH-HHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 34566666 455886 888773 3455566788899999999999976543
No 244
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=80.86 E-value=1.1 Score=40.18 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=18.4
Q ss_pred HHHhHhcCCc--EEEEcCCCCchhHHh
Q 013392 49 AIPVILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 49 ~~~~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
.++.++.|.+ ++..|.||+|||++.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3444557766 477799999999874
No 245
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=80.80 E-value=2.8 Score=40.03 Aligned_cols=59 Identities=14% Similarity=0.060 Sum_probs=53.1
Q ss_pred CceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEec
Q 013392 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD 394 (444)
Q Consensus 319 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~ 394 (444)
.+.+||.++.+..+....+.+... +..+..++++.+..++......+..|..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~-----------------gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN-----------------GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT-----------------TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHc-----------------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 368999999999999999888876 78899999999999999999999999999999986
No 246
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=80.60 E-value=1.1 Score=35.62 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
++-+++.|++|+|||.++-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 35589999999999975543
No 247
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=80.59 E-value=12 Score=31.79 Aligned_cols=76 Identities=9% Similarity=0.203 Sum_probs=53.3
Q ss_pred cCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEec---
Q 013392 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD--- 394 (444)
Q Consensus 318 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~--- 394 (444)
.+.+++|.++++..+..+.+.+++.... .+..+..+.|+.+.......+ ..+ .+|+|+|+
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l 187 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTH-------------HVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRL 187 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTT-------------CCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhh-------------cCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHH
Confidence 4678999999999999999888775321 155677788887766544333 333 78999994
Q ss_pred ---cc-ccCCCCCCCcEEEE
Q 013392 395 ---VA-ARGLDFPKVKCIIQ 410 (444)
Q Consensus 395 ---~~-~~G~di~~~~~vi~ 410 (444)
+. ..++++.+++.||.
T Consensus 188 ~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 188 LDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp HHHHHHCTTCCCTTCCEEEE
T ss_pred HHHHHccCCcccccCCEEEE
Confidence 21 12467788888775
No 248
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=80.59 E-value=1.1 Score=36.54 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 013392 55 SGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~ 73 (444)
.++-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999643
No 249
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=80.50 E-value=1.2 Score=35.58 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.+..+++.|++|+|||.++-.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456789999999999976543
No 250
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=80.49 E-value=1.6 Score=40.73 Aligned_cols=51 Identities=18% Similarity=0.014 Sum_probs=33.4
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
.|.-+++.|++|+|||..++..+.+.... +.+++++..- .-..|+..++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~---------g~~vl~fSlE-ms~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHSLE-MGKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT---------TCEEEEECSS-SCTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc---------CCEEEEEECC-CCHHHHHHHHHH
Confidence 44568999999999998877766665543 3457777643 344455554443
No 251
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.23 E-value=1.2 Score=40.44 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
..++++.||+|+|||..+-.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 45799999999999976654
No 252
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=80.23 E-value=1.1 Score=42.13 Aligned_cols=21 Identities=52% Similarity=0.670 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCchhHHhHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~ 76 (444)
++.+++.||+|+|||..+...
T Consensus 63 ~~~iLl~GppGtGKT~la~al 83 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAI 83 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHH
Confidence 367999999999999876543
No 253
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=80.22 E-value=1.1 Score=39.52 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.0
Q ss_pred cEEEEcCCCCchhHHhHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~ 77 (444)
.++|.||||+|||..+...+
T Consensus 7 ~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999997665443
No 254
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=79.90 E-value=1.9 Score=37.83 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=16.6
Q ss_pred cEEEEcCCCCchhHHhHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~ 79 (444)
-+++.|++|+|||.++...+..
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHH
Confidence 4678999999999876654433
No 255
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=79.87 E-value=1.2 Score=36.19 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=16.8
Q ss_pred cEEEEcCCCCchhHHhHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~ 79 (444)
-.++.|++|+|||..+...+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3589999999999876554443
No 256
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=79.72 E-value=1.3 Score=34.82 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 013392 56 GRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~ 74 (444)
+..+.+.|++|+|||..+-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4578999999999997543
No 257
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=79.69 E-value=1.4 Score=38.94 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=17.8
Q ss_pred HHhHhcCCc--EEEEcCCCCchhHHh
Q 013392 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 50 ~~~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
++.++.|.+ ++..|.||+|||++.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 334557766 577799999999874
No 258
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=79.53 E-value=1.3 Score=36.03 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 013392 55 SGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~ 73 (444)
.++-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 6777899999999999643
No 259
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=79.18 E-value=1.3 Score=40.09 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCCchhH
Q 013392 54 LSGRHVLVNAATGTGKTV 71 (444)
Q Consensus 54 ~~~~~~il~~~tG~GKT~ 71 (444)
..|..+++.||||+|||.
T Consensus 173 ~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HTTCCEEEEESSSSCHHH
T ss_pred hcCCEEEEECCCCCCHHH
Confidence 378899999999999995
No 260
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=79.08 E-value=7.2 Score=32.03 Aligned_cols=94 Identities=10% Similarity=0.116 Sum_probs=56.1
Q ss_pred CCCcHHH-HHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHH
Q 013392 299 CGSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (444)
Q Consensus 299 ~~~k~~~-l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 377 (444)
...|... +..++........+.+++|.++++..+..+.+.+...... .+..+..++|+.+..+...
T Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~ 127 (224)
T 1qde_A 61 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFH-------------MDIKVHACIGGTSFVEDAE 127 (224)
T ss_dssp TSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT-------------SCCCEEEECC---------
T ss_pred CCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcc-------------cCceEEEEeCCcchHHHHh
Confidence 3456655 4555555443445679999999999999998887765321 1567777888776554333
Q ss_pred HHHHhhcCCCcEEEEeccc------ccCCCCCCCcEEEE
Q 013392 378 TFGAFKTEKKALLLSTDVA------ARGLDFPKVKCIIQ 410 (444)
Q Consensus 378 ~~~~f~~g~~~iLi~t~~~------~~G~di~~~~~vi~ 410 (444)
. +. ..+|+|+|.-. ...+++.+++.||.
T Consensus 128 ~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 128 G---LR--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp ----CT--TCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred c---CC--CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 2 22 37899999632 23466777887775
No 261
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.03 E-value=1.3 Score=39.43 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=16.4
Q ss_pred cEEEEcCCCCchhHHhHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPII 78 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~ 78 (444)
-++|.||||+|||..+...+.
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 478999999999987655443
No 262
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=78.88 E-value=2.1 Score=37.82 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=16.6
Q ss_pred cEEEEcCCCCchhHHhHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~ 79 (444)
-+.+.+++|+|||.++...+..
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999876654443
No 263
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=78.88 E-value=1.5 Score=35.07 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
+.-+++.|++|+|||..+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999976544
No 264
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=78.86 E-value=3.2 Score=40.35 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=52.5
Q ss_pred CceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHh--hcCCCcEEEEec
Q 013392 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAF--KTEKKALLLSTD 394 (444)
Q Consensus 319 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~iLi~t~ 394 (444)
.+.+||.++.+..++...+.+... +..+..++|+.+..++..+...+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~-----------------gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL-----------------GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH-----------------TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc-----------------CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 468999999999999999988876 88899999999999998888888 467899999998
No 265
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=78.85 E-value=1.6 Score=34.99 Aligned_cols=16 Identities=31% Similarity=0.709 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCchhHH
Q 013392 57 RHVLVNAATGTGKTVA 72 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~ 72 (444)
+.++|+||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999964
No 266
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=78.70 E-value=1.5 Score=39.17 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=20.2
Q ss_pred HHHhHhcCCc--EEEEcCCCCchhHHhH
Q 013392 49 AIPVILSGRH--VLVNAATGTGKTVAYL 74 (444)
Q Consensus 49 ~~~~~~~~~~--~il~~~tG~GKT~~~~ 74 (444)
.++.++.|.+ ++..|.||+|||++..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 5666678876 4677999999998764
No 267
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=78.69 E-value=1.3 Score=36.09 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 013392 55 SGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~ 74 (444)
.|.-+.+.||+|+|||..+-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56678999999999996543
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=78.68 E-value=1.5 Score=34.41 Aligned_cols=18 Identities=6% Similarity=0.017 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
-+++.|++|+|||..+-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999976544
No 269
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=78.68 E-value=4 Score=33.78 Aligned_cols=76 Identities=8% Similarity=0.145 Sum_probs=49.7
Q ss_pred cCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecc-c
Q 013392 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV-A 396 (444)
Q Consensus 318 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~-~ 396 (444)
.+.+++|.++++..+..+.+.+...... +..+..++|+.+...+...+ . ...+|+|+|+- +
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l 154 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYK--------------GLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRL 154 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCT--------------TCCEEEECC------CHHHH---H-SCCSEEEECHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhccc--------------CceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHH
Confidence 4678999999999999999988875321 66777788877655433322 2 34789999952 1
Q ss_pred -----ccCCCCCCCcEEEEc
Q 013392 397 -----ARGLDFPKVKCIIQY 411 (444)
Q Consensus 397 -----~~G~di~~~~~vi~~ 411 (444)
...+++.+++.||.-
T Consensus 155 ~~~~~~~~~~~~~~~~lViD 174 (228)
T 3iuy_A 155 NDLQMNNSVNLRSITYLVID 174 (228)
T ss_dssp HHHHHTTCCCCTTCCEEEEC
T ss_pred HHHHHcCCcCcccceEEEEE
Confidence 235677788887753
No 270
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=78.55 E-value=1.6 Score=39.06 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=19.7
Q ss_pred HHHhHhcCCc--EEEEcCCCCchhHHhH
Q 013392 49 AIPVILSGRH--VLVNAATGTGKTVAYL 74 (444)
Q Consensus 49 ~~~~~~~~~~--~il~~~tG~GKT~~~~ 74 (444)
.++.++.|.+ ++..|.||+|||++..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 4555667776 4777999999998764
No 271
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=78.52 E-value=1.6 Score=39.14 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=17.3
Q ss_pred HhHhcCCc--EEEEcCCCCchhHHh
Q 013392 51 PVILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 51 ~~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
+.++.|.+ ++..|.||+|||++.
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 34557766 477799999999864
No 272
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=78.37 E-value=1.7 Score=39.80 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=20.0
Q ss_pred HHHhHhcCCc--EEEEcCCCCchhHHhH
Q 013392 49 AIPVILSGRH--VLVNAATGTGKTVAYL 74 (444)
Q Consensus 49 ~~~~~~~~~~--~il~~~tG~GKT~~~~ 74 (444)
.++.++.|.+ ++..|.||+|||++..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 5566668876 4777999999998764
No 273
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=78.33 E-value=1.5 Score=40.12 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=18.6
Q ss_pred HHHhHhcCCc--EEEEcCCCCchhHHhH
Q 013392 49 AIPVILSGRH--VLVNAATGTGKTVAYL 74 (444)
Q Consensus 49 ~~~~~~~~~~--~il~~~tG~GKT~~~~ 74 (444)
.++.++.|.+ ++..|.||+|||++..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 3344557765 4777999999998753
No 274
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=78.31 E-value=1.5 Score=39.19 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=17.1
Q ss_pred HhHhcCCc--EEEEcCCCCchhHHh
Q 013392 51 PVILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 51 ~~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
+.++.|.+ ++..|.||+|||++.
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 33456766 477799999999874
No 275
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=78.23 E-value=0.96 Score=36.07 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=26.1
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~ 116 (444)
+++.|++|||||..+...+ . . +..++++......-.++.+++..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la-----~-------~-~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI-----G-------D-APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH-----C-------S-CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH-----h-------c-CCCeEEEecCCCCCHHHHHHHHHH
Confidence 5889999999997555322 1 1 223888888665555566555554
No 276
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=78.23 E-value=1.7 Score=38.57 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=19.8
Q ss_pred hHHHhHhcCCc--EEEEcCCCCchhHHh
Q 013392 48 QAIPVILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 48 ~~~~~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
..++.++.|.+ ++..|.||+|||++.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35566678876 477799999999865
No 277
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=78.13 E-value=1.7 Score=39.07 Aligned_cols=32 Identities=38% Similarity=0.506 Sum_probs=22.0
Q ss_pred CCHHHHhHHH--------hHhcCCc--EEEEcCCCCchhHHh
Q 013392 42 PTKVQAQAIP--------VILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 42 ~~~~Q~~~~~--------~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
+..-|.+.++ .++.|.+ ++..|.||+|||++.
T Consensus 82 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 82 ETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4445655554 3456766 477799999999875
No 278
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=78.11 E-value=1.7 Score=38.89 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=22.2
Q ss_pred CCHHHHhHHHh--------HhcCCc--EEEEcCCCCchhHHh
Q 013392 42 PTKVQAQAIPV--------ILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 42 ~~~~Q~~~~~~--------~~~~~~--~il~~~tG~GKT~~~ 73 (444)
+..-|.+.++. ++.|.+ ++..|.||+|||++.
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 45556555543 456766 477799999999874
No 279
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=78.08 E-value=1.7 Score=39.16 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=21.9
Q ss_pred CCHHHHhHHH--------hHhcCCc--EEEEcCCCCchhHHh
Q 013392 42 PTKVQAQAIP--------VILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 42 ~~~~Q~~~~~--------~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
+..-|.+.++ .++.|.+ ++..|.||+|||++.
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4455655544 3456766 477799999999874
No 280
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.07 E-value=2.2 Score=40.77 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=32.5
Q ss_pred ccccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhH-----hcCCcEEEEcCCCCchhHHhHHH
Q 013392 14 IFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVI-----LSGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 14 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~-----~~~~~~il~~~tG~GKT~~~~~~ 76 (444)
-+...+|+++.-.+...+.+.....- ........+... -..+.+++.||+|+|||..+...
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~--~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~l 97 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLAN--WENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 97 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT--HHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHH
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHH--hHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 35666777777677666666332110 000000000000 02257899999999999766543
No 281
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=78.02 E-value=5.8 Score=33.17 Aligned_cols=77 Identities=9% Similarity=0.065 Sum_probs=54.8
Q ss_pred cCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEec---
Q 013392 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD--- 394 (444)
Q Consensus 318 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~--- 394 (444)
.+.+++|.++++..+..+.+.+++... ..+..+..++|+.+.......+.. ..+|+|+|+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~-------------~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l 163 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCR-------------ACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRL 163 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHH-------------HTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHh-------------hcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHH
Confidence 456899999999999999887766421 126678888998887766554432 478999996
Q ss_pred --ccc-cCCCCCCCcEEEEc
Q 013392 395 --VAA-RGLDFPKVKCIIQY 411 (444)
Q Consensus 395 --~~~-~G~di~~~~~vi~~ 411 (444)
.+. ..+++.+++.+|.-
T Consensus 164 ~~~l~~~~~~~~~~~~lViD 183 (242)
T 3fe2_A 164 IDFLECGKTNLRRTTYLVLD 183 (242)
T ss_dssp HHHHHHTSCCCTTCCEEEET
T ss_pred HHHHHcCCCCcccccEEEEe
Confidence 222 24577888887753
No 282
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=78.01 E-value=1.1 Score=35.92 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCCchhHHh
Q 013392 54 LSGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 54 ~~~~~~il~~~tG~GKT~~~ 73 (444)
..|+-+++.||+|+|||..+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35667899999999999643
No 283
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=77.97 E-value=4 Score=35.18 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=21.2
Q ss_pred hHhcCCcEEEEcCCCCchhHHhHHHHH
Q 013392 52 VILSGRHVLVNAATGTGKTVAYLAPII 78 (444)
Q Consensus 52 ~~~~~~~~il~~~tG~GKT~~~~~~~~ 78 (444)
.+..|.-++|.||+|+|||..+...+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345778889999999999987665544
No 284
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=77.89 E-value=2.2 Score=37.13 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
.|.-++|.|++|+|||..+...+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 6677899999999999765544433
No 285
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=77.88 E-value=1.6 Score=39.05 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=17.8
Q ss_pred HHhHhcCCc--EEEEcCCCCchhHHh
Q 013392 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 50 ~~~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
++.++.|.+ ++..|.||+|||++.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 344557766 477799999999865
No 286
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=77.88 E-value=8.4 Score=35.87 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=23.5
Q ss_pred hHHHhHh---cCCcEEEEcCCCCchhHHhHHHHHH
Q 013392 48 QAIPVIL---SGRHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 48 ~~~~~~~---~~~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
.+++.+. .|+..++.++.|+|||..+...+.+
T Consensus 140 r~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 140 KVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred hHHHHHhhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 3555554 7888999999999999765544444
No 287
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=77.85 E-value=1.4 Score=35.81 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 013392 55 SGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~ 74 (444)
.|.-+.+.||+|+|||..+-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 56678899999999996543
No 288
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=77.75 E-value=1.7 Score=38.75 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=17.3
Q ss_pred HhHhcCCc--EEEEcCCCCchhHHh
Q 013392 51 PVILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 51 ~~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
+.++.|.+ ++..|.||+|||++.
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 34456766 477799999999874
No 289
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=77.73 E-value=1.6 Score=39.34 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=17.7
Q ss_pred HHhHhcCCc--EEEEcCCCCchhHHh
Q 013392 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 50 ~~~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
++.++.|.+ ++..|.||+|||++.
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 334557766 477799999999864
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=77.73 E-value=1.4 Score=34.96 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
-+++.|++|+|||..+-.
T Consensus 4 ~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 368999999999976544
No 291
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=77.69 E-value=1.3 Score=35.37 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.+..+++.|++|+|||..+-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345689999999999976554
No 292
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=77.57 E-value=1.8 Score=39.07 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=17.7
Q ss_pred HHhHhcCCc--EEEEcCCCCchhHHh
Q 013392 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 50 ~~~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
++.++.|.+ ++..|.||+|||++.
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 344557766 477799999999864
No 293
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=77.19 E-value=2 Score=45.72 Aligned_cols=49 Identities=27% Similarity=0.337 Sum_probs=33.9
Q ss_pred EEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHH
Q 013392 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (444)
Q Consensus 60 il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~ 115 (444)
+|.|..|||||.+.+.-+.+.+... ..+.++|++||...--. +.+++..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~------~~~~~il~lVP~q~TFt-~~~rl~~ 53 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA------PFGKPIIFLVPDQMTFL-MEYELAK 53 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC------TTSSCEEEECCGGGHHH-HHHHHTC
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC------CCCCcEEEEecCcccHH-HHHHHHH
Confidence 7889999999998887777766552 12456999999864333 4444443
No 294
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=77.16 E-value=1.5 Score=40.00 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchhHHhHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~ 77 (444)
-++|.||||+|||..+...+
T Consensus 4 ~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHH
Confidence 36889999999997665544
No 295
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=77.08 E-value=3.3 Score=36.16 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=59.3
Q ss_pred CCcHHH-HHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 300 GSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 300 ~~k~~~-l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
..|... ++.++........+..+||.++++..+..+.+.+...... +++..+....++.+....
T Consensus 142 sGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~------------~~~~~~~~~~~~~~~~~~--- 206 (300)
T 3fmo_B 142 TGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF------------YPELKLAYAVRGNKLERG--- 206 (300)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT------------STTCCEEEESTTCCCCTT---
T ss_pred CCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhh------------CCCcEEEEEeCCccHhhh---
Confidence 445543 4566666544444558999999999999998888765321 124566666665543211
Q ss_pred HHHhhcCCCcEEEEeccc------c-cCCCCCCCcEEEEc
Q 013392 379 FGAFKTEKKALLLSTDVA------A-RGLDFPKVKCIIQY 411 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~~------~-~G~di~~~~~vi~~ 411 (444)
.....+|+|+|+-- . ..+++.+++++|.-
T Consensus 207 ----~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlD 242 (300)
T 3fmo_B 207 ----QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (300)
T ss_dssp ----CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEET
T ss_pred ----hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEe
Confidence 13456899999732 1 24677788888763
No 296
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=77.05 E-value=1.7 Score=38.95 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=18.3
Q ss_pred HHHhHhcCCc--EEEEcCCCCchhHHh
Q 013392 49 AIPVILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 49 ~~~~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
.++.++.|.+ ++..|.||+|||++.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3344557776 477799999999875
No 297
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=76.98 E-value=1.7 Score=38.93 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=18.4
Q ss_pred HHHhHhcCCc--EEEEcCCCCchhHHh
Q 013392 49 AIPVILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 49 ~~~~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
.++.++.|.+ ++..|.||+|||++.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4445557776 467799999999874
No 298
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=76.84 E-value=16 Score=32.95 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=62.8
Q ss_pred CCcHHHH-HHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 300 GSRLAVL-LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 300 ~~k~~~l-~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
..|.... ..++........+.+++|.|+++..+..+.+.+.+.... +++..+..++|+.+.......
T Consensus 56 sGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~------------~~~~~~~~~~g~~~~~~~~~~ 123 (391)
T 1xti_A 56 MGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKY------------MPNVKVAVFFGGLSIKKDEEV 123 (391)
T ss_dssp SSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTT------------CTTCCEEEECTTSCHHHHHHH
T ss_pred CcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhh------------CCCeEEEEEeCCCCHHHHHHH
Confidence 3455443 333433322334569999999999999988887765321 126778889998887655443
Q ss_pred HHHhhcCCCcEEEEecc-c-----ccCCCCCCCcEEEE
Q 013392 379 FGAFKTEKKALLLSTDV-A-----ARGLDFPKVKCIIQ 410 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~-~-----~~G~di~~~~~vi~ 410 (444)
+..+..+|+|+|.- + ...+++.+++.||.
T Consensus 124 ---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 124 ---LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp ---HHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred ---HhcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 34567899999963 2 23456778888775
No 299
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=76.68 E-value=1.6 Score=39.16 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=18.1
Q ss_pred HHhHhcCCc--EEEEcCCCCchhHHhH
Q 013392 50 IPVILSGRH--VLVNAATGTGKTVAYL 74 (444)
Q Consensus 50 ~~~~~~~~~--~il~~~tG~GKT~~~~ 74 (444)
++.++.|.+ ++..|.||+|||++..
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 344557766 4777999999998643
No 300
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=76.39 E-value=1.6 Score=38.26 Aligned_cols=20 Identities=30% Similarity=0.220 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCchhHHhHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~ 76 (444)
..+++.||+|+|||..+-..
T Consensus 48 ~~~ll~G~~GtGKt~la~~l 67 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTL 67 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 36899999999999866543
No 301
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=76.30 E-value=1.9 Score=39.14 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=18.6
Q ss_pred HHHhHhcCCc--EEEEcCCCCchhHHhH
Q 013392 49 AIPVILSGRH--VLVNAATGTGKTVAYL 74 (444)
Q Consensus 49 ~~~~~~~~~~--~il~~~tG~GKT~~~~ 74 (444)
.++.++.|.+ ++..|.||+|||++..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 3344557765 5777999999998753
No 302
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=76.12 E-value=1.8 Score=39.12 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=16.7
Q ss_pred hHhcCCc--EEEEcCCCCchhHHh
Q 013392 52 VILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 52 ~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
.++.|.+ ++..|.||+|||++.
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCceEEEEeecCCCCCcceec
Confidence 3456766 477799999999864
No 303
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=76.07 E-value=1.5 Score=37.13 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=33.3
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHh--cCCcEEEEcCCCCchhHHhH
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~il~~~tG~GKT~~~~ 74 (444)
....+|+++.-.+.....+...... + -....+..+- -.+.+++.||+|+|||..+-
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~--~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--H--HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--H--HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 4456888887777777766432110 0 0112333322 23459999999999997543
No 304
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=75.94 E-value=2.1 Score=34.46 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCCchhHHhHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~ 76 (444)
.+..+++.|++|+|||..+-..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999765543
No 305
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=75.84 E-value=1.9 Score=34.54 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=13.8
Q ss_pred CcEEEEcCCCCchhHHh
Q 013392 57 RHVLVNAATGTGKTVAY 73 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~ 73 (444)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999643
No 306
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=75.84 E-value=13 Score=30.80 Aligned_cols=77 Identities=6% Similarity=0.057 Sum_probs=51.3
Q ss_pred ccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecc-
Q 013392 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV- 395 (444)
Q Consensus 317 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~- 395 (444)
..+.+++|.++++..+..+.+.+++.... .+..+..++|+.+.......+ +..+|+|+|.-
T Consensus 95 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~ 156 (236)
T 2pl3_A 95 TDGLGVLIISPTRELAYQTFEVLRKVGKN-------------HDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGR 156 (236)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHHTTT-------------SSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHH
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCC-------------CCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHH
Confidence 34678999999999999999888775321 146778888877655433322 45789999962
Q ss_pred c----cc--CCCCCCCcEEEEc
Q 013392 396 A----AR--GLDFPKVKCIIQY 411 (444)
Q Consensus 396 ~----~~--G~di~~~~~vi~~ 411 (444)
+ .. .+++.+++.+|.-
T Consensus 157 l~~~l~~~~~~~~~~~~~lViD 178 (236)
T 2pl3_A 157 LLQHMDETVSFHATDLQMLVLD 178 (236)
T ss_dssp HHHHHHHCSSCCCTTCCEEEET
T ss_pred HHHHHHhcCCcccccccEEEEe
Confidence 2 12 3667778877753
No 307
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=75.80 E-value=3.2 Score=33.07 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.+.-+++.|++|+|||..+-.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 345678999999999976554
No 308
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=75.55 E-value=1.6 Score=38.56 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
...+++.||+|+|||..+-.
T Consensus 38 ~~~vll~G~~GtGKT~la~~ 57 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHV 57 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 36799999999999976544
No 309
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=75.48 E-value=2.1 Score=33.45 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCchhHHhHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~ 76 (444)
+++++.|+.|||||.++-..
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 57899999999999876543
No 310
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=75.37 E-value=2.3 Score=33.52 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.6
Q ss_pred cEEEEcCCCCchhHHhHHH
Q 013392 58 HVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~ 76 (444)
.+++.|++|+|||..+-..
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5899999999999765543
No 311
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=75.37 E-value=2.2 Score=39.59 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=16.9
Q ss_pred hHhcCCc--EEEEcCCCCchhHHh
Q 013392 52 VILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 52 ~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
.++.|.+ ++..|.||+|||++.
T Consensus 131 ~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 131 HNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HhhcCCceEEEEeCCCCCCCCEEe
Confidence 3457766 477799999999875
No 312
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=75.25 E-value=2.2 Score=39.09 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=20.0
Q ss_pred hHHHhHhcCCc--EEEEcCCCCchhHHh
Q 013392 48 QAIPVILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 48 ~~~~~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
..++.++.|.+ ++..|.||+|||++.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35666678876 477799999999875
No 313
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=75.19 E-value=9.3 Score=30.78 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=51.3
Q ss_pred cCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecc--
Q 013392 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV-- 395 (444)
Q Consensus 318 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~-- 395 (444)
.+.+++|.++++..+..+.+.+..... +..+..++|+.+.....+.+. ...+|+|+|.-
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l 131 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAP---------------HLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRA 131 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCT---------------TSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhh---------------cceEEEEECCCChHHHHHHhh----CCCCEEEECHHHH
Confidence 456899999999999999988877632 456777888776554433332 24789999962
Q ss_pred ---cc-cCCCCCCCcEEEE
Q 013392 396 ---AA-RGLDFPKVKCIIQ 410 (444)
Q Consensus 396 ---~~-~G~di~~~~~vi~ 410 (444)
+. ..+++.+++.||.
T Consensus 132 ~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 132 LDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp HHHHHHTSSCCTTCSEEEE
T ss_pred HHHHHcCCcchhhceEEEE
Confidence 22 2466777888775
No 314
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=75.17 E-value=1.4 Score=39.28 Aligned_cols=17 Identities=47% Similarity=0.792 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCchhH
Q 013392 55 SGRHVLVNAATGTGKTV 71 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~ 71 (444)
.|+.+.+.||||+|||.
T Consensus 170 ~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HTCCEEEEESTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 68899999999999996
No 315
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=74.97 E-value=2.1 Score=35.36 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCchhHH
Q 013392 55 SGRHVLVNAATGTGKTVA 72 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~ 72 (444)
.|+-+.+.||+|+|||..
T Consensus 22 ~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677889999999999964
No 316
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=74.86 E-value=1.7 Score=35.25 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.+..+++.|+.|+|||..+-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 456689999999999976543
No 317
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=74.83 E-value=2 Score=34.89 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.++-+++.|+.|+|||..+-.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456789999999999975443
No 318
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=74.83 E-value=3.5 Score=36.13 Aligned_cols=20 Identities=45% Similarity=0.604 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
+.-+.+.||+|+|||...-.
T Consensus 102 g~vi~lvG~nGsGKTTll~~ 121 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAK 121 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 44578899999999975443
No 319
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=74.70 E-value=2.3 Score=38.42 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=22.0
Q ss_pred CCHHHHhHH-------HhHhcCCc--EEEEcCCCCchhHHhH
Q 013392 42 PTKVQAQAI-------PVILSGRH--VLVNAATGTGKTVAYL 74 (444)
Q Consensus 42 ~~~~Q~~~~-------~~~~~~~~--~il~~~tG~GKT~~~~ 74 (444)
+..-|.+.+ +.++.|.+ ++..|.||+|||++..
T Consensus 93 ~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 93 PGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp TTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred CcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 444555544 44557766 4777999999998643
No 320
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=74.58 E-value=2.3 Score=34.81 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchhHHhHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~ 77 (444)
.+++.||+|+||+..+-..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36888999999998766544
No 321
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=74.53 E-value=21 Score=27.45 Aligned_cols=74 Identities=19% Similarity=0.140 Sum_probs=47.3
Q ss_pred CceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHH---HHh-cCCCcEEEeCchHHHHHHhccCccccC
Q 013392 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARL-RKGISILVATPGRLLDHLKHTSSFLHT 168 (444)
Q Consensus 93 ~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iii~T~~~l~~~l~~~~~~~~~ 168 (444)
+.++||.++++..+....+.+.... .....++++....+.. ..+ .+..+|+|+|. .+ . ..+++.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~--~Gld~~ 102 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDLG-----YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-VA----A--RGIDIE 102 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-GG----T--TTCCCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-hh----h--cCCchh
Confidence 4569999999999999998888752 3445555554333222 222 34578999992 21 1 455566
Q ss_pred CccEEEEech
Q 013392 169 NLRWIIFDEA 178 (444)
Q Consensus 169 ~~~lvV~DE~ 178 (444)
.+++||.-+.
T Consensus 103 ~~~~Vi~~~~ 112 (163)
T 2hjv_A 103 NISLVINYDL 112 (163)
T ss_dssp CCSEEEESSC
T ss_pred cCCEEEEeCC
Confidence 7888886543
No 322
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=74.52 E-value=1.8 Score=39.30 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCHHHHhHHHh--------HhcCCc--EEEEcCCCCchhHHh
Q 013392 42 PTKVQAQAIPV--------ILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 42 ~~~~Q~~~~~~--------~~~~~~--~il~~~tG~GKT~~~ 73 (444)
+..-|.+.++. ++.|.+ ++..|.||+|||++.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 55567777654 446766 467799999999875
No 323
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=74.47 E-value=1.8 Score=34.17 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
+..+++.|+.|+|||..+-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45688999999999975443
No 324
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=74.16 E-value=1.9 Score=38.88 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=18.9
Q ss_pred HHHhHhcCCc--EEEEcCCCCchhHHh
Q 013392 49 AIPVILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 49 ~~~~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
.++.++.|.+ ++..|.||+|||++.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4555667876 466799999999874
No 325
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=74.12 E-value=1.4 Score=34.74 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 013392 55 SGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~ 73 (444)
.|.-+.+.||.|+|||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566889999999999643
No 326
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=73.97 E-value=2.1 Score=34.32 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
+.-+++.|++|+|||..+-.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34578999999999976544
No 327
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=73.85 E-value=1.4 Score=39.40 Aligned_cols=20 Identities=45% Similarity=0.380 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
..++++.||+|+|||..+-.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~ 64 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRA 64 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHH
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 45699999999999976543
No 328
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=73.85 E-value=2.5 Score=39.19 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=18.4
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
.+++.|++|+|||..+...+....
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999987766554443
No 329
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=73.72 E-value=2.4 Score=34.81 Aligned_cols=18 Identities=17% Similarity=0.291 Sum_probs=14.8
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
.+++.|++|+|||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999976554
No 330
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=73.68 E-value=2.6 Score=34.76 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCchhHHhHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~ 76 (444)
+..+++.|++|+|||..+-..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 356899999999999765543
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=73.59 E-value=2.2 Score=34.77 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCCchhHHhHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~ 76 (444)
.+.-+++.|+.|+|||..+-..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 3456889999999999765543
No 332
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=73.58 E-value=2.5 Score=35.78 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.++.+++.|++|+|||..+-.
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488999999999999976544
No 333
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=73.51 E-value=2.5 Score=34.91 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCCchhHHhHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~ 77 (444)
..+-+++.||+|+||+..+-..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34557889999999998765543
No 334
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=73.48 E-value=2.3 Score=34.14 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
.-+++.|++|||||..+-.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999976544
No 335
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=73.36 E-value=2.5 Score=34.27 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
.-+++.|+.|+|||..+-.
T Consensus 19 ~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SCEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999976544
No 336
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=73.28 E-value=2.9 Score=33.65 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.+.-+++.|++|+|||..+-.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 455689999999999976544
No 337
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=73.04 E-value=7.3 Score=33.09 Aligned_cols=59 Identities=7% Similarity=0.027 Sum_probs=35.7
Q ss_pred HHHhHhc-----CCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHHHHHHHHh
Q 013392 49 AIPVILS-----GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (444)
Q Consensus 49 ~~~~~~~-----~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~l~~~~ 117 (444)
.++.++. |..+++.+++|+|||..++.-+.+.+.+ +.++++++-. +-..+..+.+..++
T Consensus 9 ~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~---------Ge~~~~~~~~-e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 9 ELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKS---------DNLVGMFSIS-YPLQLIIRILSRFG 72 (260)
T ss_dssp HHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHT---------TCEEEEEECS-SCHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHC---------CCcEEEEEEe-CCHHHHHHHHHHcC
Confidence 3455553 4567888788888885555555555533 5557776653 44555666666654
No 338
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=73.02 E-value=2 Score=34.81 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.+.-+.+.|++|+|||..+-.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456788999999999975543
No 339
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=73.01 E-value=3.1 Score=33.11 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
..+++.|++|+|||.++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3588999999999986654
No 340
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=72.97 E-value=3.1 Score=39.06 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCCchhHHhHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~ 76 (444)
...++++.||+|+|||..+-..
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHH
Confidence 3457999999999999866543
No 341
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=72.69 E-value=2.4 Score=33.87 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
-+++.|++|+|||..+-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999976544
No 342
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=72.44 E-value=2.1 Score=35.55 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
...+++.|++|+|||..+-.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 35689999999999976543
No 343
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=72.43 E-value=2.3 Score=37.93 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
..+++.||+|+|||..+-.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5789999999999975443
No 344
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=72.38 E-value=5 Score=37.95 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
.+.++++.|+||||||...-..+...+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 346789999999999975444333333
No 345
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=72.31 E-value=2.9 Score=34.53 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
...+++.|++|+|||..+-.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35689999999999976554
No 346
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=72.29 E-value=4.1 Score=35.98 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=18.4
Q ss_pred CcEEEEcCCCCchhHHhHHHHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
.-+++.|++|+|||..++..+..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999877765554
No 347
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=72.20 E-value=35 Score=27.13 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=46.6
Q ss_pred CceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHH---HH-hcCCCcEEEeCchHHHHHHhccCccccC
Q 013392 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---AR-LRKGISILVATPGRLLDHLKHTSSFLHT 168 (444)
Q Consensus 93 ~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~iii~T~~~l~~~l~~~~~~~~~ 168 (444)
+.++||.++++.-+....+.+.... .....++++....+.. .. ..+..+|+|+| + + +. ..+++.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g-----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-~-~---~~--~Gldi~ 121 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG-----VEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-D-V---AS--KGLDFP 121 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT-----CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-H-H---HH--TTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-C-c---hh--cCCCcc
Confidence 3469999999999999998887752 3344555554433222 12 23568899999 2 2 22 345566
Q ss_pred CccEEEEec
Q 013392 169 NLRWIIFDE 177 (444)
Q Consensus 169 ~~~lvV~DE 177 (444)
.+++||.-+
T Consensus 122 ~v~~VI~~d 130 (191)
T 2p6n_A 122 AIQHVINYD 130 (191)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEeC
Confidence 788877644
No 348
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=72.14 E-value=2.2 Score=36.83 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=33.1
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHh--cCCcEEEEcCCCCchhHHhH
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~il~~~tG~GKT~~~~ 74 (444)
...+|+++.-.+.+.+.+...... +. ....+..+- -.+.+++.||+|+|||..+-
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~--~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK--NPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH--CHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH--CHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 457788888888877777432110 00 112333321 13458999999999997543
No 349
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=72.00 E-value=3.2 Score=32.54 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
+.+++.|++|+|||..+-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578999999999976554
No 350
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=71.99 E-value=3.1 Score=33.69 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCchhHHhHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~ 76 (444)
..+++.|++|+|||..+-..
T Consensus 21 ~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35789999999999765543
No 351
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=71.98 E-value=3 Score=34.80 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchhHHhHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~ 76 (444)
...+++.|++|+|||..+-..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456899999999999866543
No 352
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=71.80 E-value=2.8 Score=40.90 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=18.7
Q ss_pred HhcCCcEEEEcCCCCchhHHhHH
Q 013392 53 ILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 53 ~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
+..++.+++.||+|+|||..+-.
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQA 79 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHHHHH
Confidence 44788999999999999975443
No 353
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=71.67 E-value=4.4 Score=37.55 Aligned_cols=35 Identities=23% Similarity=0.099 Sum_probs=23.7
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
.+++.+++|+|||.++...+...... .+.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~--------~G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREK--------HKKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--------SCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEe
Confidence 46778999999998877665544322 145577665
No 354
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=71.51 E-value=4.3 Score=35.48 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
.-+.+.||+|+|||...-.
T Consensus 101 ~vi~lvG~nGsGKTTll~~ 119 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGK 119 (302)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHH
Confidence 3468999999999975443
No 355
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=71.45 E-value=3.1 Score=35.06 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchhHHhHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~ 76 (444)
...+++.|+.|+|||..+-..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L 49 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNL 49 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 346899999999999766543
No 356
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=71.40 E-value=4.2 Score=35.48 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=16.9
Q ss_pred cEEEEcCCCCchhHHhHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
-+.+.+++|+|||..+...+...
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46778999999998766554443
No 357
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=71.38 E-value=2.8 Score=34.46 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=14.7
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
.+++.|++|+|||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999976554
No 358
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=71.18 E-value=2.3 Score=36.96 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
.-+++.||+|+|||..+-.
T Consensus 34 ~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp EEEEEECCTTSCTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3479999999999976543
No 359
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=70.85 E-value=2.9 Score=38.77 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
.+++++.||+|+|||..+-.
T Consensus 50 ~~~iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARR 69 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 36799999999999986544
No 360
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=70.70 E-value=2.9 Score=33.41 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=14.9
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
-+++.|++|+|||..+-.
T Consensus 8 ~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999976554
No 361
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=70.67 E-value=4.5 Score=35.21 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
++-+.+.++.|+|||..+...+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 445677899999999876654443
No 362
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=70.64 E-value=2.9 Score=37.54 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=15.7
Q ss_pred cCCc--EEEEcCCCCchhHHhH
Q 013392 55 SGRH--VLVNAATGTGKTVAYL 74 (444)
Q Consensus 55 ~~~~--~il~~~tG~GKT~~~~ 74 (444)
.|.+ ++..|.||+|||++..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 4665 5788999999998753
No 363
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=70.55 E-value=12 Score=33.95 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=23.7
Q ss_pred HHHhHHHhHh---cCCcEEEEcCCCCchhHHhHH
Q 013392 45 VQAQAIPVIL---SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 45 ~Q~~~~~~~~---~~~~~il~~~tG~GKT~~~~~ 75 (444)
.-..+++.+. .|+.+.+.+|+|+|||..+..
T Consensus 160 tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 160 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp HHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred ccceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 3355666655 688999999999999976543
No 364
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=70.50 E-value=2.9 Score=34.60 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=15.7
Q ss_pred HhcCCcEEEEcCCCCchhHH
Q 013392 53 ILSGRHVLVNAATGTGKTVA 72 (444)
Q Consensus 53 ~~~~~~~il~~~tG~GKT~~ 72 (444)
+-.|+-+.|.||.|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44677889999999999964
No 365
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=70.42 E-value=4.4 Score=35.83 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=24.4
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEec
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 101 (444)
++..+..|.|||.++...+...... +.+|+++-.
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~---------G~rVLlvD~ 50 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARS---------GKKTLVIST 50 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEEC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHC---------CCcEEEEeC
Confidence 4677889999999888777665543 555776653
No 366
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=70.40 E-value=2.3 Score=41.34 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchhHHh
Q 013392 58 HVLVNAATGTGKTVAY 73 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~ 73 (444)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999643
No 367
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=70.09 E-value=2.8 Score=33.57 Aligned_cols=19 Identities=16% Similarity=0.401 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
.-+++.||+|+|||..+-.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3468899999999975443
No 368
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=69.83 E-value=4.8 Score=35.68 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=24.6
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
-++..+..|.|||.++...+...... +.+++++-
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA~~---------G~rVllvD 54 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMSKV---------RSSVLLIS 54 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHTS---------SSCEEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC---------CCeEEEEE
Confidence 35777889999999888766665533 55677764
No 369
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=69.82 E-value=3.1 Score=33.99 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=16.0
Q ss_pred hHhcCCcEEEEcCCCCchhHH
Q 013392 52 VILSGRHVLVNAATGTGKTVA 72 (444)
Q Consensus 52 ~~~~~~~~il~~~tG~GKT~~ 72 (444)
.+..|+-+.+.||.|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 456788889999999999964
No 370
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=69.80 E-value=2.5 Score=39.63 Aligned_cols=55 Identities=25% Similarity=0.378 Sum_probs=33.8
Q ss_pred ccCCccccCCCHHHHHHHHHHcCC-CCCCHHHHhHHHhHh--cCCcEEEEcCCCCchhHHhHH
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGF-EAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~-~~~~~~Q~~~~~~~~--~~~~~il~~~tG~GKT~~~~~ 75 (444)
...+|+++.=.+...+.+.+...+ ..+ +.+..+- ..+.+++.||+|+|||..+-.
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~-----~~~~~~g~~~p~gvLL~GppGtGKT~Lara 68 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDP-----SKFNRIGARMPKGILLVGPPGTGKTLLARA 68 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCT-----HHHHTTTCCCCSEEEEECCTTSSHHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhCh-----HHHhhcCCCCCCeEEEECCCCCCHHHHHHH
Confidence 356788888778777777443211 111 1222221 235699999999999976544
No 371
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=69.78 E-value=3.3 Score=33.42 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=14.4
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
.+++.|++|+|||..+-.
T Consensus 2 ~I~i~G~~GsGKsT~~~~ 19 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAE 19 (205)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 368999999999975544
No 372
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=69.69 E-value=3.3 Score=34.09 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCchhHHhHHH
Q 013392 57 RHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~ 76 (444)
..+++.|++|+|||..+-..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45889999999999765543
No 373
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=69.29 E-value=2.9 Score=36.80 Aligned_cols=25 Identities=24% Similarity=0.123 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~ 79 (444)
.+..+++.||+|+|||..++..+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4455799999999999877665443
No 374
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=69.08 E-value=6.3 Score=43.13 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=30.3
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~ 103 (444)
.++.+++.|++|+|||..++..+...+.. +.+++|+.-..
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~---------G~~vlYI~te~ 72 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAEH 72 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhC---------CCceEEEEecC
Confidence 35789999999999999887776665543 45588887553
No 375
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=69.00 E-value=5.2 Score=35.84 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=23.8
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
++..+..|.|||.++...+...... +.+|+++-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~---------G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEK---------GLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHS---------SCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC---------CCeEEEEe
Confidence 5677889999999887766665543 45576665
No 376
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=68.89 E-value=3.5 Score=33.57 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCchhHHhHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~ 76 (444)
.+.-+++.|+.|+|||..+-..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHH
Confidence 4566899999999999765543
No 377
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=68.79 E-value=3.8 Score=31.89 Aligned_cols=18 Identities=11% Similarity=0.074 Sum_probs=14.7
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
.+++.|++|+|||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEEESCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999976544
No 378
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=68.47 E-value=3.4 Score=33.87 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=15.1
Q ss_pred cEEEEcCCCCchhHHhHHH
Q 013392 58 HVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~ 76 (444)
.+++.|++|+|||..+-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999765543
No 379
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=68.32 E-value=3.1 Score=33.69 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
-+++.|++|+|||..+-.
T Consensus 17 ~I~l~G~~GsGKsT~~~~ 34 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEK 34 (203)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999976543
No 380
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=68.25 E-value=5.5 Score=38.69 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=21.1
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhc
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQS 83 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~ 83 (444)
+-+++.+..|.|||.++...+......
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~ 35 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQ 35 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHC
Confidence 456888999999999888777666544
No 381
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=67.88 E-value=3 Score=32.92 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCchhHHhHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~ 76 (444)
.|+.+++.|+.|+|||..++..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHH
Confidence 4677899999999999765543
No 382
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=67.85 E-value=5 Score=32.75 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=21.3
Q ss_pred CHHHHhHHHhHhcCCcEEEEcCCCCchhHHhHH
Q 013392 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 43 ~~~Q~~~~~~~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
.+.++.... +..+.-+++.|++|+|||..+-.
T Consensus 13 ~~~~r~~~~-~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 13 TRSERTELR-NQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp CHHHHHHHH-TSSCEEEEEECSTTSSHHHHHHH
T ss_pred CHHHhhccc-CCCCCEEEEECCCCCCHHHHHHH
Confidence 344444422 34566788999999999976544
No 383
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=67.81 E-value=2.3 Score=35.41 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=11.8
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 013392 55 SGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~ 73 (444)
.|+-+.+.||+|+|||..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999643
No 384
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=67.77 E-value=5.3 Score=36.78 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=16.9
Q ss_pred cEEEEcCCCCchhHHhHHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIINH 80 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~ 80 (444)
-+.+.++.|+|||.++...+...
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46778999999998766554443
No 385
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=67.73 E-value=3.2 Score=32.87 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.+.-+.+.|+.|+|||..+-.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~ 24 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMA 24 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345678999999999975443
No 386
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=67.70 E-value=7.3 Score=30.57 Aligned_cols=18 Identities=22% Similarity=0.025 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
-+.+.|+.|+|||.....
T Consensus 6 ~i~i~G~sGsGKTTl~~~ 23 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEK 23 (169)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367889999999965433
No 387
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=67.56 E-value=3 Score=34.04 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 013392 55 SGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~ 73 (444)
.+.-+.|.||+|+|||..+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456789999999999643
No 388
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=67.49 E-value=4 Score=33.30 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCchhHHhHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~ 76 (444)
.+.-+++.|+.|+|||..+-..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKL 29 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3566899999999999766543
No 389
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=67.39 E-value=3.1 Score=32.94 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=12.1
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
+.-+++.|+.|+|||..+-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999976554
No 390
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=67.36 E-value=27 Score=31.33 Aligned_cols=92 Identities=10% Similarity=0.116 Sum_probs=59.6
Q ss_pred CcHHH-HHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHH
Q 013392 301 SRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (444)
Q Consensus 301 ~k~~~-l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 379 (444)
.|... +..++........+.+++|.++++..+..+.+.+.+.... .+..+..++|+.+..+....+
T Consensus 70 GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~~ 136 (394)
T 1fuu_A 70 GKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFH-------------MDIKVHACIGGTSFVEDAEGL 136 (394)
T ss_dssp HHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT-------------SCCCEEEECSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhcc-------------CCeeEEEEeCCCchHHHHhhc
Confidence 35543 3444444433345679999999999999988877665321 156788889988877655544
Q ss_pred HHhhcCCCcEEEEeccc------ccCCCCCCCcEEEE
Q 013392 380 GAFKTEKKALLLSTDVA------ARGLDFPKVKCIIQ 410 (444)
Q Consensus 380 ~~f~~g~~~iLi~t~~~------~~G~di~~~~~vi~ 410 (444)
. ..+|+|+|.-. ...++..++++||.
T Consensus 137 ~-----~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 137 R-----DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp H-----HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred C-----CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 3 35799998521 12345667777765
No 391
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=67.30 E-value=4.1 Score=32.54 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=14.5
Q ss_pred EEEEcCCCCchhHHhHHH
Q 013392 59 VLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~ 76 (444)
+++.|+.|||||..+-..
T Consensus 3 I~l~G~~GsGKsT~~~~L 20 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKL 20 (195)
T ss_dssp EEEECSTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 688999999999765543
No 392
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=67.30 E-value=6.1 Score=34.99 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
+.-+.+.||+|+|||...-.
T Consensus 129 g~vi~lvG~nGaGKTTll~~ 148 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAK 148 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34578999999999975433
No 393
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=67.29 E-value=4 Score=33.75 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=15.0
Q ss_pred cEEEEcCCCCchhHHhHHH
Q 013392 58 HVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~ 76 (444)
.+++.|++|+|||..+-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999765543
No 394
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=67.12 E-value=5.9 Score=35.59 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
.-+.+.||+|+|||...-.
T Consensus 158 ~vi~lvG~nGsGKTTll~~ 176 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGK 176 (359)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 3468999999999975443
No 395
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=66.98 E-value=41 Score=25.81 Aligned_cols=74 Identities=14% Similarity=0.098 Sum_probs=46.7
Q ss_pred CceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHH---HHh-cCCCcEEEeCchHHHHHHhccCccccC
Q 013392 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARL-RKGISILVATPGRLLDHLKHTSSFLHT 168 (444)
Q Consensus 93 ~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iii~T~~~l~~~l~~~~~~~~~ 168 (444)
+.++||.++++..+...++.+.... .....++++....+.. ..+ .+..+|+|+|. . +. ..+++.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~----~~--~G~d~~ 97 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRNDK-----FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-L----LA--RGIDVQ 97 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-G----GT--TTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-----CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-h----hh--cCCCcc
Confidence 4569999999999999888887742 3344555554433222 222 34578999992 1 11 445566
Q ss_pred CccEEEEech
Q 013392 169 NLRWIIFDEA 178 (444)
Q Consensus 169 ~~~lvV~DE~ 178 (444)
.+++||.-+.
T Consensus 98 ~~~~Vi~~~~ 107 (165)
T 1fuk_A 98 QVSLVINYDL 107 (165)
T ss_dssp SCSEEEESSC
T ss_pred cCCEEEEeCC
Confidence 7788776443
No 396
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=66.98 E-value=4.1 Score=33.67 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
..+.+.|++|+|||..+-.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999975544
No 397
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=66.65 E-value=3.4 Score=35.21 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
.-++++|++|+|||..+-.
T Consensus 5 ~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 3578999999999976554
No 398
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=66.64 E-value=7.3 Score=32.00 Aligned_cols=33 Identities=27% Similarity=0.215 Sum_probs=22.2
Q ss_pred EEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEec
Q 013392 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (444)
Q Consensus 60 il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 101 (444)
+....+|.|||.+++..+...... +.+|+++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~---------G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAA---------GYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHT---------TCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC---------CCCEEEEcc
Confidence 444568999999888766555433 556877643
No 399
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=66.25 E-value=3.8 Score=32.59 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.2
Q ss_pred cEEEEcCCCCchhHHh
Q 013392 58 HVLVNAATGTGKTVAY 73 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~ 73 (444)
.+.+.||.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999643
No 400
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=66.10 E-value=4.2 Score=32.61 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=14.2
Q ss_pred EEEEcCCCCchhHHhHH
Q 013392 59 VLVNAATGTGKTVAYLA 75 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~ 75 (444)
+++.|+.|+|||..+-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999976554
No 401
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=66.05 E-value=3.1 Score=34.40 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.|.-+.+.||+|+|||..+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456789999999999975444
No 402
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=65.66 E-value=3.8 Score=33.28 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
.+.+.|+.|+|||.++-.
T Consensus 4 ~i~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999975543
No 403
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=65.60 E-value=5 Score=30.71 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.9
Q ss_pred cEEEEcCCCCchhHH
Q 013392 58 HVLVNAATGTGKTVA 72 (444)
Q Consensus 58 ~~il~~~tG~GKT~~ 72 (444)
-.+|.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 458999999999975
No 404
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=65.29 E-value=5.2 Score=40.24 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCCchhHHhHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~ 77 (444)
..++++.||+|+|||..+-..+
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la 222 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLA 222 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 4589999999999998765433
No 405
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=65.21 E-value=4.1 Score=35.64 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCchhHH
Q 013392 55 SGRHVLVNAATGTGKTVA 72 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~ 72 (444)
.|+.+.|.||+|+|||..
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 677889999999999964
No 406
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=65.07 E-value=33 Score=30.88 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=59.6
Q ss_pred CCcHHH-HHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 300 GSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 300 ~~k~~~-l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
..|... +..++........+.+++|.++++..+..+.+.+...... .+..+..++|+.+.......
T Consensus 69 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~ 135 (400)
T 1s2m_A 69 TGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKH-------------CGISCMVTTGGTNLRDDILR 135 (400)
T ss_dssp SCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-------------TTCCEEEECSSSCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcc-------------cCceEEEEeCCcchHHHHHH
Confidence 345543 3333444332334568999999999999998888765321 15677778888776543222
Q ss_pred HHHhhcCCCcEEEEecc-----ccc-CCCCCCCcEEEEc
Q 013392 379 FGAFKTEKKALLLSTDV-----AAR-GLDFPKVKCIIQY 411 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~-----~~~-G~di~~~~~vi~~ 411 (444)
..+..+|+|+|.- +.. ..++.++++||.-
T Consensus 136 ----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 136 ----LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp ----TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred ----hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 2356789999952 222 3567778887753
No 407
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=65.06 E-value=4.7 Score=32.39 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 013392 56 GRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~ 74 (444)
|..+.+.||.|+|||...-
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 3457899999999996543
No 408
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=64.88 E-value=6.7 Score=34.84 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=24.7
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
+-+++.+.-|.|||.++...+...... +.+|+++-
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~---------g~~vllid 51 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKV---------RRSVLLLS 51 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTS---------SSCEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhC---------CCcEEEEE
Confidence 346777889999999888766665432 55576665
No 409
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=64.88 E-value=3.5 Score=33.55 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 013392 55 SGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~ 74 (444)
.+.-+.+.|++|+|||..+-
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34557899999999996443
No 410
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=64.62 E-value=1.6 Score=44.17 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=33.7
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHH--hHhcCCcEEEEcCCCCchhHHhHH
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIP--VILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~--~~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
....|+++.-.+.+.+.+.....+...++ +.+. .+..++.+++.||+|+|||..+-.
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~---~~~~~~~~~~~~~vLL~GppGtGKT~Laka 530 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHP---DKFLKFGMTPSKGVLFYGPPGCGKTLLAKA 530 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSC---TTTTCCCCCCCCCCCCBCCTTSSHHHHHHH
T ss_pred ccccccccccchhhhhhHHHHHHhhhhch---HHHHhcCCCCCceeEEECCCCCCHHHHHHH
Confidence 45567777777777777754432211111 0111 112456799999999999975543
No 411
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=64.43 E-value=4.6 Score=38.77 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.+..+++.||+|+|||..+-.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 356799999999999976543
No 412
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=64.18 E-value=7.3 Score=36.80 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=23.4
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEec
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 101 (444)
.++++|++|+|||.++...+.... . .+.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~-~--------~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ-R--------KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH-H--------TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-h--------CCCeEEEEec
Confidence 467889999999987665544433 2 2445777665
No 413
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=64.05 E-value=9.4 Score=36.56 Aligned_cols=28 Identities=36% Similarity=0.466 Sum_probs=20.0
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHHHhc
Q 013392 56 GRHVLVNAATGTGKTVAYLAPIINHLQS 83 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~~~~~~~ 83 (444)
..++++.|.||||||...-..+...+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~ 241 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFK 241 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3578999999999997655444444433
No 414
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=64.04 E-value=6.6 Score=43.70 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=33.4
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEeccHHHHHHHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 110 (444)
.++.+++.+|+|+|||..++..+.+.... +.+++|+.-. ++..+..
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~---------Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT---------TCCEEEECTT-SCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEEcc-ccHHHHH
Confidence 56889999999999999887776666543 5568887644 4444444
No 415
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=64.01 E-value=6.9 Score=33.24 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=16.6
Q ss_pred EEEcCCCCchhHHhHHHHHHHHh
Q 013392 60 LVNAATGTGKTVAYLAPIINHLQ 82 (444)
Q Consensus 60 il~~~tG~GKT~~~~~~~~~~~~ 82 (444)
+..+..|.|||.++...+.....
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~ 45 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYAR 45 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHH
T ss_pred EEcCCCCCCHHHHHHHHHHHHHH
Confidence 44567889999988776665543
No 416
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=63.94 E-value=22 Score=24.80 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=33.7
Q ss_pred EEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcC
Q 013392 322 LVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE 385 (444)
Q Consensus 322 ~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 385 (444)
.++|.++.+....+...+++. |..++.+.++.....|.+-++.|..-
T Consensus 5 fvvfssdpeilkeivreikrq-----------------gvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQ-----------------GVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHT-----------------TCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEecCCHHHHHHHHHHHHhC-----------------CeEEEEEecCchHHHHHHHHHHHHHc
Confidence 456776666666666666655 77888888888888777777777643
No 417
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=63.61 E-value=22 Score=28.22 Aligned_cols=74 Identities=18% Similarity=0.120 Sum_probs=41.0
Q ss_pred CCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhH----HHHHhcCCCcEEEeCchHHHHHHhccCcccc
Q 013392 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK----EKARLRKGISILVATPGRLLDHLKHTSSFLH 167 (444)
Q Consensus 92 ~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~ 167 (444)
.+.++||.++++.-+...++.+.... .....+.++....+ ......+..+|+|+| +.+. ..+++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g-----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~------~Gldi 112 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEG-----YACTSIHGDRSQRDREEALHQFRSGKSPILVAT-AVAA------RGLDI 112 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTT-----CCEEEEC--------CHHHHHHHHTSSSEEEEE-C------------CC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcC-----CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-Chhh------cCCCc
Confidence 35669999999999999888887742 23344444332221 122224567899999 2221 33445
Q ss_pred CCccEEEEec
Q 013392 168 TNLRWIIFDE 177 (444)
Q Consensus 168 ~~~~lvV~DE 177 (444)
..+++||.-+
T Consensus 113 ~~~~~VI~~d 122 (185)
T 2jgn_A 113 SNVKHVINFD 122 (185)
T ss_dssp CSBSEEEESS
T ss_pred ccCCEEEEeC
Confidence 6777777633
No 418
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=63.58 E-value=8.3 Score=32.66 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=21.9
Q ss_pred EEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 60 il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
+..+..|.|||.+++..+...... +.+|+++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~---------g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQL---------GHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHT---------TCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhC---------CCcEEEEE
Confidence 556788999999887766555433 44576654
No 419
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=63.53 E-value=7.3 Score=32.34 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=21.3
Q ss_pred EEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 60 il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
+.....|.|||.+++..+...... +.+|+++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~---------g~~VlliD 38 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDR---------GRKVLAVD 38 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHT---------TCCEEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhc---------CCeEEEEe
Confidence 445678899999887766555433 44576664
No 420
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=63.44 E-value=4 Score=33.04 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchhHHhH
Q 013392 58 HVLVNAATGTGKTVAYL 74 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~ 74 (444)
.+.+.|++|+|||..+-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47899999999997543
No 421
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=63.43 E-value=3.9 Score=33.37 Aligned_cols=18 Identities=22% Similarity=0.170 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCchhHHh
Q 013392 56 GRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~ 73 (444)
+.-+.|.||+|+|||..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445789999999999643
No 422
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=63.35 E-value=3.7 Score=47.14 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 013392 55 SGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~ 73 (444)
.+++++++||||+|||..+
T Consensus 1266 ~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 6789999999999999765
No 423
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=63.29 E-value=3 Score=35.39 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
..+++.|++|+|||..+-.
T Consensus 33 ~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp EEEEEESCGGGTTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4579999999999976544
No 424
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=63.22 E-value=42 Score=26.04 Aligned_cols=73 Identities=10% Similarity=-0.019 Sum_probs=46.7
Q ss_pred CCceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHH---HHh-cCCCcEEEeCchHHHHHHhccCcccc
Q 013392 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARL-RKGISILVATPGRLLDHLKHTSSFLH 167 (444)
Q Consensus 92 ~~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iii~T~~~l~~~l~~~~~~~~ 167 (444)
.+.++||.++++..+...++.+.+.. .....++++....+.. ..+ .+..+|+|+|.- + ...+++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~--~~Gid~ 100 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDG-----HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----C--ARGIDV 100 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTT-----CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----C--CTTTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----h--hcCCCc
Confidence 35679999999999999888887642 3345555554433322 222 345889999921 1 145566
Q ss_pred CCccEEEEe
Q 013392 168 TNLRWIIFD 176 (444)
Q Consensus 168 ~~~~lvV~D 176 (444)
..+++||.-
T Consensus 101 ~~~~~Vi~~ 109 (175)
T 2rb4_A 101 KQVTIVVNF 109 (175)
T ss_dssp TTEEEEEES
T ss_pred ccCCEEEEe
Confidence 678888853
No 425
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=63.12 E-value=4.1 Score=32.85 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
.+.|.|++|||||.++-.
T Consensus 10 ~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999976543
No 426
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=63.02 E-value=4.7 Score=34.12 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.+..+.|.||+|+|||..+-.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345688999999999975443
No 427
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=62.73 E-value=7.3 Score=34.95 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=25.2
Q ss_pred cEEEEcCCCCchhHHhHHHHHHHHh-ccCCCCCCCCCceEEEEec
Q 013392 58 HVLVNAATGTGKTVAYLAPIINHLQ-SYSPRIDRSSGTFALVLVP 101 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~~~~-~~~~~~~~~~~~~vlil~P 101 (444)
-++..+..|.|||.++...+..... . .+.+|+++-.
T Consensus 20 i~v~sgKGGvGKTTvaanLA~~lA~~~--------~G~rVLLvD~ 56 (354)
T 2woj_A 20 WIFVGGKGGVGKTTSSCSIAIQMALSQ--------PNKQFLLIST 56 (354)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHC--------TTSCEEEEEC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhc--------CCCeEEEEEC
Confidence 3567788999999988887766652 2 2555777654
No 428
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=62.53 E-value=43 Score=30.26 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=59.7
Q ss_pred CCcHHHHH-HHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 300 GSRLAVLL-SILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 300 ~~k~~~l~-~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
..|..... .++........+.++||.++++..+..+.+.+...... .+..+..++|+.+.......
T Consensus 85 sGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~ 151 (410)
T 2j0s_A 85 TGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDY-------------MNVQCHACIGGTNVGEDIRK 151 (410)
T ss_dssp SSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-------------TTCCEEEECTTSCHHHHHHH
T ss_pred CCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhcc-------------CCeEEEEEECCCCHHHHHHH
Confidence 45664433 34443322345679999999999999999888765321 15667778888777655443
Q ss_pred HHHhhcCCCcEEEEec-----cccc-CCCCCCCcEEEE
Q 013392 379 FGAFKTEKKALLLSTD-----VAAR-GLDFPKVKCIIQ 410 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~-----~~~~-G~di~~~~~vi~ 410 (444)
+. ...+|+|+|. .+.. .++...+++||.
T Consensus 152 ~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 152 LD----YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp HH----HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred hh----cCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 32 2358999985 2323 356667777764
No 429
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=62.51 E-value=16 Score=38.31 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=67.1
Q ss_pred CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhcc----ceEEEecCCCHHH
Q 013392 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRC----KTFRLHGNMKQED 374 (444)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 374 (444)
...|....+..+.... ..+.+++|.++++..+..+.+.++..... .+. .+..++|+.+...
T Consensus 81 GSGKTl~~lp~l~~~~--~~~~~~lil~PtreLa~Q~~~~l~~l~~~-------------~~i~~~~~v~~~~Gg~~~~~ 145 (1054)
T 1gku_B 81 GVGKTSFGLAMSLFLA--LKGKRCYVIFPTSLLVIQAAETIRKYAEK-------------AGVGTENLIGYYHGRIPKRE 145 (1054)
T ss_dssp TSCSHHHHHHHHHHHH--TTSCCEEEEESCHHHHHHHHHHHHHHHTT-------------TCCSGGGSEEECCSSCCSHH
T ss_pred CCCHHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHHHHHHhh-------------cCCCccceEEEEeCCCChhh
Confidence 3456655555555442 34679999999999999999988765321 134 7888999999988
Q ss_pred HHHHHHHhhcCCCcEEEEecc-cccCCC-CCCCcEEEEc
Q 013392 375 RRTTFGAFKTEKKALLLSTDV-AARGLD-FPKVKCIIQY 411 (444)
Q Consensus 375 r~~~~~~f~~g~~~iLi~t~~-~~~G~d-i~~~~~vi~~ 411 (444)
+.+..+.+.+ .+|+|+|+- +..-+. +.++++||.-
T Consensus 146 ~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l~~lViD 182 (1054)
T 1gku_B 146 KENFMQNLRN--FKIVITTTQFLSKHYRELGHFDFIFVD 182 (1054)
T ss_dssp HHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCCSEEEES
T ss_pred HHHHHhhccC--CCEEEEcHHHHHHHHHHhccCCEEEEe
Confidence 8877877776 899999973 222222 5577777753
No 430
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=62.42 E-value=4.7 Score=31.90 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=12.9
Q ss_pred cEEEEcCCCCchhHH
Q 013392 58 HVLVNAATGTGKTVA 72 (444)
Q Consensus 58 ~~il~~~tG~GKT~~ 72 (444)
-.+|.||+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 468999999999964
No 431
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=62.15 E-value=4.3 Score=38.33 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=32.2
Q ss_pred ccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHh--cCCcEEEEcCCCCchhHHhH
Q 013392 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 16 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~il~~~tG~GKT~~~~ 74 (444)
...+|+++.-.+.....+.+...+ +.. ...+..+- -.+.+++.||+|+|||..+-
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~--l~~--~~~~~~lg~~ip~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF--LKN--PSRFHEMGARIPKGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH--HHC--GGGTTTTSCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH--hhc--hhhhhhccCCCCceEEEECCCCCCHHHHHH
Confidence 567888888777777776433111 000 01111111 13458999999999997544
No 432
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=61.83 E-value=5.8 Score=31.94 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
.+.+.|++|||||.++-.
T Consensus 14 iIgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467889999999976544
No 433
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=61.70 E-value=4.8 Score=33.85 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 013392 56 GRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~ 75 (444)
...+.+.||.|+|||..+-.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 35689999999999965433
No 434
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=61.43 E-value=29 Score=36.26 Aligned_cols=33 Identities=15% Similarity=0.011 Sum_probs=22.1
Q ss_pred eeEEEeCCcchhHHHHHhcCCCcEEEeCchHHH
Q 013392 124 VPGYVMGGENRSKEKARLRKGISILVATPGRLL 156 (444)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~ 156 (444)
....+.++.........+..++.|+|+|-+...
T Consensus 245 RvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277 (1221)
T ss_dssp SCEEEEESCCCHHHHHHHHSSCCEEEECSCSHH
T ss_pred CEEEEEeCcChHHHHHhhCCCeEEEEeccChHH
Confidence 344455555555666667788999999977543
No 435
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=61.08 E-value=8.3 Score=32.49 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=16.6
Q ss_pred EEEcCCCCchhHHhHHHHHHHHh
Q 013392 60 LVNAATGTGKTVAYLAPIINHLQ 82 (444)
Q Consensus 60 il~~~tG~GKT~~~~~~~~~~~~ 82 (444)
+.....|.|||.+++..+.....
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~ 29 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQ 29 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHH
T ss_pred EECCCCCCcHHHHHHHHHHHHHh
Confidence 44567889999988776665553
No 436
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=61.00 E-value=8.5 Score=32.95 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=21.2
Q ss_pred EEEEc-CCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEE
Q 013392 59 VLVNA-ATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (444)
Q Consensus 59 ~il~~-~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil 99 (444)
+.+.+ ..|.|||.++...+...... +.+|++|
T Consensus 85 I~vts~kgG~GKTt~a~nLA~~lA~~---------G~rVLLI 117 (271)
T 3bfv_A 85 IVITSEAPGAGKSTIAANLAVAYAQA---------GYKTLIV 117 (271)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHT---------TCCEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhC---------CCeEEEE
Confidence 44544 46899999888776665543 4557665
No 437
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=60.94 E-value=9.6 Score=33.19 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=22.1
Q ss_pred cEEEEcC-CCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEe
Q 013392 58 HVLVNAA-TGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (444)
Q Consensus 58 ~~il~~~-tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 100 (444)
-+++.++ .|.|||.++...+...... +.+|++|=
T Consensus 106 vI~vts~kgG~GKTtva~nLA~~lA~~---------G~rVLLID 140 (299)
T 3cio_A 106 ILMITGATPDSGKTFVSSTLAAVIAQS---------DQKVLFID 140 (299)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHT---------TCCEEEEE
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHhC---------CCcEEEEE
Confidence 3445544 6899999888766665533 45577763
No 438
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=60.76 E-value=7 Score=32.70 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=17.3
Q ss_pred EEEEcCCCCchhHHhHHHHHHHH
Q 013392 59 VLVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~ 81 (444)
+.+.+.-|.|||.++...+....
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la 25 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA 25 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCHHHHHHHHHHHHH
Confidence 44578899999998877665554
No 439
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.61 E-value=8.6 Score=38.63 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=16.2
Q ss_pred cEEEEcCCCCchhHHhHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~ 77 (444)
.+++.||||+|||..+-..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala 542 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALA 542 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 49999999999998765433
No 440
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=60.52 E-value=8.9 Score=36.01 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
-+.+.|++|+|||...-.
T Consensus 295 VI~LVGpNGSGKTTLl~~ 312 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGK 312 (503)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCcccHHHHHHH
Confidence 468999999999975443
No 441
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=60.31 E-value=10 Score=32.82 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=29.0
Q ss_pred CCHHHHhHHHhHhc----------CCcEEEE-cCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEE
Q 013392 42 PTKVQAQAIPVILS----------GRHVLVN-AATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (444)
Q Consensus 42 ~~~~Q~~~~~~~~~----------~~~~il~-~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil 99 (444)
|...-.|++..+.. .+-+.+. +..|.|||.++...+...... +.+||+|
T Consensus 68 p~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~---------G~rVLLI 127 (286)
T 3la6_A 68 PTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQT---------NKRVLLI 127 (286)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTT---------TCCEEEE
T ss_pred CCCHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhC---------CCCEEEE
Confidence 44445566655441 1233344 457899999888766665533 4557766
No 442
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=60.24 E-value=3.1 Score=32.84 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchhHHhH
Q 013392 58 HVLVNAATGTGKTVAYL 74 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~ 74 (444)
-+.+.|++|+|||..+-
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999996543
No 443
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=60.22 E-value=9.2 Score=32.28 Aligned_cols=22 Identities=23% Similarity=0.054 Sum_probs=16.5
Q ss_pred cEEEEcCCCCchhHHhHHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPIIN 79 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~~ 79 (444)
-+++.+..|+|||..+...+..
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHH
Confidence 4688899999999766554443
No 444
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=60.16 E-value=56 Score=25.29 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=46.7
Q ss_pred CceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHH---HHh-cCCCcEEEeCchHHHHHHhccCccccC
Q 013392 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARL-RKGISILVATPGRLLDHLKHTSSFLHT 168 (444)
Q Consensus 93 ~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iii~T~~~l~~~l~~~~~~~~~ 168 (444)
+.++||.++++..+...++.+.... .....++++....+.. ..+ .+..+|+|+|.- + ...+++.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~------~~Gldi~ 98 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQN-----FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-F------GRGMDIE 98 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-C------STTCCGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcC-----CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-h------hcCcchh
Confidence 4569999999999999998888752 3344555554433221 222 345889999932 1 1345556
Q ss_pred CccEEEEech
Q 013392 169 NLRWIIFDEA 178 (444)
Q Consensus 169 ~~~lvV~DE~ 178 (444)
.+++||.-+.
T Consensus 99 ~~~~Vi~~d~ 108 (172)
T 1t5i_A 99 RVNIAFNYDM 108 (172)
T ss_dssp GCSEEEESSC
T ss_pred hCCEEEEECC
Confidence 7777776443
No 445
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=59.79 E-value=6.5 Score=35.45 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchhHHh
Q 013392 58 HVLVNAATGTGKTVAY 73 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~ 73 (444)
-.+|.||+|+|||...
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999654
No 446
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=59.77 E-value=28 Score=32.19 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=62.4
Q ss_pred CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
...|.......+..... ..+.++||.|+++..+....+.+.+... .++..+..++|+....++...
T Consensus 33 G~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~-------------~~~~~v~~~~g~~~~~~~~~~ 98 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFN-------------LPPEKIVALTGEKSPEERSKA 98 (494)
T ss_dssp TSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBC-------------SCGGGEEEECSCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhC-------------cchhheEEeeCCcchhhhhhh
Confidence 34566665555544432 4567999999999999998888877531 014488999999988766544
Q ss_pred HHHhhcCCCcEEEEecc-cc-----cCCCCCCCcEEEE
Q 013392 379 FGAFKTEKKALLLSTDV-AA-----RGLDFPKVKCIIQ 410 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~-~~-----~G~di~~~~~vi~ 410 (444)
.. ..+|+|+|.- +. ..++..+.++||.
T Consensus 99 ~~-----~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 99 WA-----RAKVIVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp HH-----HCSEEEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred cc-----CCCEEEecHHHHHHHHhcCCcchhhceEEEE
Confidence 32 3579999852 22 1356667777775
No 447
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=59.62 E-value=11 Score=30.64 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=16.6
Q ss_pred EEEcCCCCchhHHhHHHHHHHH
Q 013392 60 LVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 60 il~~~tG~GKT~~~~~~~~~~~ 81 (444)
+.....|.|||.+++..+....
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la 26 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLA 26 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHH
Confidence 4567789999998877665554
No 448
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=59.31 E-value=18 Score=31.86 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=12.8
Q ss_pred EEEEcCCCCchhHHh
Q 013392 59 VLVNAATGTGKTVAY 73 (444)
Q Consensus 59 ~il~~~tG~GKT~~~ 73 (444)
+-+.||+|+|||..+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999754
No 449
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=58.99 E-value=19 Score=33.18 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=53.3
Q ss_pred CceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecc---
Q 013392 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV--- 395 (444)
Q Consensus 319 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~--- 395 (444)
+.++||.+++++.+..+++.+++.... .+..+..++|+.+...+...+ ....+|+|+|+-
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~-------------~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~ 191 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFE-------------SYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLL 191 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTT-------------SSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHH
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhcc-------------CCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHH
Confidence 468999999999999999888775321 156778889988876554433 245789999962
Q ss_pred --ccc-CCCCCCCcEEEE
Q 013392 396 --AAR-GLDFPKVKCIIQ 410 (444)
Q Consensus 396 --~~~-G~di~~~~~vi~ 410 (444)
+.. .+++.+++++|.
T Consensus 192 ~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 192 DFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp HHHHTTSCCCTTCCEEEE
T ss_pred HHHHhCCcccccCCeEEE
Confidence 222 356778888775
No 450
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=58.95 E-value=19 Score=32.68 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=24.9
Q ss_pred CCHHHHhHHHhHh---cCCcEEEEcCCCCchhHHh
Q 013392 42 PTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 42 ~~~~Q~~~~~~~~---~~~~~il~~~tG~GKT~~~ 73 (444)
+-..-..+++.+. .|+...|.++.|+|||..+
T Consensus 158 ~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 158 PKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp TTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHH
T ss_pred chhccchhhhhcccccCCceEEEecCCCCChhHHH
Confidence 3344466777766 6889999999999999765
No 451
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=58.95 E-value=10 Score=33.87 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=25.6
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHh-ccCCCCCCCCCceEEEEec
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQ-SYSPRIDRSSGTFALVLVP 101 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~-~~~~~~~~~~~~~vlil~P 101 (444)
+-+++.+.-|.|||.++...+..... . .+.+++++--
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~--------~g~~vllid~ 56 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQ--------PNEQFLLIST 56 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHC--------TTSCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhc--------CCCeEEEEEC
Confidence 45677788999999988877766552 2 2455766653
No 452
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=58.92 E-value=13 Score=38.57 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=39.1
Q ss_pred cccCCccccC-C-CHHHHHHHHHHcCCC--CCCHHH--HhHHHhHh---cCCcEEEEcCCCCchhHHhHHHH
Q 013392 15 FASCSFSSLG-L-HSTLCDQLRERLGFE--APTKVQ--AQAIPVIL---SGRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 15 ~~~~~~~~~~-l-~~~i~~~l~~~~~~~--~~~~~Q--~~~~~~~~---~~~~~il~~~tG~GKT~~~~~~~ 77 (444)
-.-+||..++ + +++..+....+ ... .|+.+. ..|+..+. .++.+++.|.+|+|||.++=..+
T Consensus 95 IaVNPyk~lp~iY~~~~~~~Y~g~-~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im 165 (1052)
T 4anj_A 95 IAVNPYFDIPKIYSSETIKSYQGK-SLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 165 (1052)
T ss_dssp EEECCSSCCTTTTSHHHHHHHTTC-CBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCccccCCHHHHHHhcCC-CCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHH
Confidence 4457777774 4 45555555322 222 355544 45666666 45679999999999998765543
No 453
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=58.76 E-value=5.9 Score=32.47 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
.-+.+.|+.|||||..+-.
T Consensus 5 ~~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANA 23 (218)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578999999999975543
No 454
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=58.73 E-value=5 Score=33.56 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCCchhH
Q 013392 55 SGRHVLVNAATGTGKTV 71 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~ 71 (444)
.|+-+.+.||.|+|||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56778999999999995
No 455
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=58.68 E-value=10 Score=31.53 Aligned_cols=23 Identities=22% Similarity=0.119 Sum_probs=15.0
Q ss_pred cEEEEcC-CCCchhHHhHHHHHHH
Q 013392 58 HVLVNAA-TGTGKTVAYLAPIINH 80 (444)
Q Consensus 58 ~~il~~~-tG~GKT~~~~~~~~~~ 80 (444)
.++|.+. ||+|||.+++..+...
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l 29 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVC 29 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3455544 8999998876644443
No 456
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=58.53 E-value=8.6 Score=38.64 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCchhHHhHHHH
Q 013392 56 GRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 56 ~~~~il~~~tG~GKT~~~~~~~ 77 (444)
..++++.||+|+|||..+-..+
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la 228 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHH
Confidence 4679999999999997655433
No 457
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=58.13 E-value=7.1 Score=32.43 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.+.-+++.|+.|+|||..+-.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~ 45 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINE 45 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHH
Confidence 456688999999999976443
No 458
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=58.04 E-value=5 Score=40.60 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=31.7
Q ss_pred ccccCCccccCCCHHHHHHHHHHcCCCCCCHHH-HhHHHh--HhcCCcEEEEcCCCCchhHHhHH
Q 013392 14 IFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQ-AQAIPV--ILSGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 14 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q-~~~~~~--~~~~~~~il~~~tG~GKT~~~~~ 75 (444)
......|+++.=.+...+.+.+.... +.. .+.+.. +..++.+++.||+|+|||..+-.
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~----~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLara 257 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVEL----PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHH----HHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHH
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHH----HhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHH
Confidence 34556777776555544444333211 000 011111 22457899999999999975443
No 459
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=57.72 E-value=7.4 Score=33.75 Aligned_cols=17 Identities=18% Similarity=0.546 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchhHHhH
Q 013392 58 HVLVNAATGTGKTVAYL 74 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~ 74 (444)
-+.|.|++|+|||..+-
T Consensus 33 ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999997543
No 460
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=57.65 E-value=6.2 Score=33.29 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=14.7
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
-+.|.|++|||||.++-.
T Consensus 24 iI~I~G~~GSGKST~a~~ 41 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAK 41 (252)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999976554
No 461
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=57.41 E-value=6.9 Score=35.35 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=13.1
Q ss_pred cEEEEcCCCCchhHH
Q 013392 58 HVLVNAATGTGKTVA 72 (444)
Q Consensus 58 ~~il~~~tG~GKT~~ 72 (444)
-.++.|+||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468999999999975
No 462
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=57.25 E-value=12 Score=33.63 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=16.0
Q ss_pred cEEEEcCCCCchhHHhHHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPII 78 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~~ 78 (444)
.+.+.|++|+|||..+...+.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578899999999976554433
No 463
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=57.22 E-value=7.5 Score=38.75 Aligned_cols=50 Identities=28% Similarity=0.326 Sum_probs=31.2
Q ss_pred cccCCccccCCCHHHHHHHHHHcCCCCCCHHHHhHHHhHhcCCc--EEEEcCCCCchhHHh
Q 013392 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRH--VLVNAATGTGKTVAY 73 (444)
Q Consensus 15 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~--~il~~~tG~GKT~~~ 73 (444)
..+..|+.+.-+..-++.+ |... . ..++.++.|.+ ++..|.||||||++.
T Consensus 429 ~~~f~fd~vf~~~~~q~~v-----~~~~---~-~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 429 NLRFLFDKIFEREQSNDLV-----FEEL---S-QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp EEEEECSEEECSSCCHHHH-----GGGT---H-HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CeEEEeceEeCCCCCHHHH-----HHHH---H-HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 3445566665444444444 1111 1 36777788876 466699999999875
No 464
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=57.07 E-value=6.2 Score=34.29 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
-+++.|++|+|||..+-.
T Consensus 4 ~I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999976544
No 465
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=57.03 E-value=8.1 Score=32.20 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 013392 57 RHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~ 75 (444)
..+.+.||+|+|||..+-.
T Consensus 10 ~~i~i~G~~GsGKsTla~~ 28 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRG 28 (233)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999976544
No 466
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.94 E-value=5.2 Score=46.60 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=19.2
Q ss_pred HHHhHh-cCCcEEEEcCCCCchhHHh
Q 013392 49 AIPVIL-SGRHVLVNAATGTGKTVAY 73 (444)
Q Consensus 49 ~~~~~~-~~~~~il~~~tG~GKT~~~ 73 (444)
.+..++ .++.++++||||+|||..+
T Consensus 1296 ll~~ll~~~~pvLL~GptGtGKT~li 1321 (3245)
T 3vkg_A 1296 VLHAWLSEHRPLILCGPPGSGKTMTL 1321 (3245)
T ss_dssp HHHHHHHTTCCCEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCcEEEECCCCCCHHHHH
Confidence 444443 6789999999999999643
No 467
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=56.81 E-value=6.2 Score=31.91 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchhHHhH
Q 013392 57 RHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~ 74 (444)
.-+.+.|+.|+|||..+-
T Consensus 23 ~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347889999999997543
No 468
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=56.79 E-value=6.5 Score=39.54 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=15.8
Q ss_pred cEEEEcCCCCchhHHhHHH
Q 013392 58 HVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~ 76 (444)
++++.||+|+|||..+-..
T Consensus 490 ~~ll~G~~GtGKT~la~~l 508 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQL 508 (758)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5899999999999876543
No 469
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=56.70 E-value=4 Score=33.28 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=13.7
Q ss_pred EEEEcCCCCchhHHhHH
Q 013392 59 VLVNAATGTGKTVAYLA 75 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~ 75 (444)
+++.|+.|+|||..+-.
T Consensus 3 I~i~G~~GsGKsTl~~~ 19 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEK 19 (214)
T ss_dssp EEEEEEEEEEHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 67899999999975543
No 470
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=56.67 E-value=18 Score=30.29 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=50.9
Q ss_pred CceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHHHHHhhcCCCcEEEEecc-c-
Q 013392 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV-A- 396 (444)
Q Consensus 319 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLi~t~~-~- 396 (444)
+.++||.++++..+..+.+.++..... .+..+..++|+.+.......+ ....+|+|+|+- +
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~ 162 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLN-------------TPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLV 162 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTT-------------SSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcc-------------CCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHH
Confidence 358999999999999998888765321 145677788877655433322 345789999963 2
Q ss_pred ---c-cCCCCCCCcEEEE
Q 013392 397 ---A-RGLDFPKVKCIIQ 410 (444)
Q Consensus 397 ---~-~G~di~~~~~vi~ 410 (444)
. ..+++..++.+|.
T Consensus 163 ~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 163 DFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp HHHHTTSBCCTTCCEEEE
T ss_pred HHHHcCCCChhhCCEEEE
Confidence 1 2356777887775
No 471
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=56.38 E-value=19 Score=32.75 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=59.0
Q ss_pred CCcHHH-HHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 300 GSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 300 ~~k~~~-l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
..|... +..++........+.+++|.++++..+..+.+.+...... .+..+....|+.+....
T Consensus 88 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~--- 151 (414)
T 3eiq_A 88 TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY-------------MGASCHACIGGTNVRAE--- 151 (414)
T ss_dssp SSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGG-------------SCCCEEECCCCTTHHHH---
T ss_pred CcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcc-------------cCceEEEEECCcchHHH---
Confidence 346554 4444444433335678999999999999998888775311 14455556665554433
Q ss_pred HHHhhcCCCcEEEEec-----cccc-CCCCCCCcEEEE
Q 013392 379 FGAFKTEKKALLLSTD-----VAAR-GLDFPKVKCIIQ 410 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~-----~~~~-G~di~~~~~vi~ 410 (444)
.+....+..+|+|+|. .+.. .++...+++||.
T Consensus 152 ~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 152 VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred HHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 3445557789999995 2222 345666777765
No 472
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=56.13 E-value=12 Score=32.98 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=22.1
Q ss_pred CCHHHHhHHHhHh-cCCcEEEEcCCCCchhHHhH
Q 013392 42 PTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 42 ~~~~Q~~~~~~~~-~~~~~il~~~tG~GKT~~~~ 74 (444)
-|..+.+.+..++ .++.++|.|+.|+|||..+.
T Consensus 16 gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 16 DREEESRKLEESLENYPLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp SCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHH
Confidence 3444444444433 45788999999999997543
No 473
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=56.12 E-value=9.1 Score=31.05 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.2
Q ss_pred cEEEEcCCCCchhHHh
Q 013392 58 HVLVNAATGTGKTVAY 73 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~ 73 (444)
-.+|.||+|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4689999999999653
No 474
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=56.01 E-value=7.2 Score=35.28 Aligned_cols=20 Identities=25% Similarity=0.224 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 013392 55 SGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~ 74 (444)
.++.+.+.||+|+|||..+-
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678999999999996543
No 475
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=55.96 E-value=11 Score=36.04 Aligned_cols=39 Identities=26% Similarity=0.253 Sum_probs=25.1
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEEecc
Q 013392 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P~ 102 (444)
.|.-+.|.|++|+|||..+...+.. ... .+.+++++++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~-~~~--------~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN-ACA--------NKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH-HHT--------TTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH-HHh--------CCCCEEEEEEe
Confidence 5567899999999999765443332 211 13357777754
No 476
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=55.94 E-value=5.9 Score=33.15 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCchhH
Q 013392 55 SGRHVLVNAATGTGKTV 71 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~ 71 (444)
.|+-+.|.||.|+|||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778999999999995
No 477
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=55.71 E-value=13 Score=32.45 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=19.0
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHHHhc
Q 013392 57 RHVLVNAATGTGKTVAYLAPIINHLQS 83 (444)
Q Consensus 57 ~~~il~~~tG~GKT~~~~~~~~~~~~~ 83 (444)
+-+.+.+.-|.|||.+++..+......
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 345555888999999887766655533
No 478
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=55.67 E-value=12 Score=32.18 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=18.0
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhc
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQS 83 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~ 83 (444)
+.+.+..|.|||.+++..+......
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 3446788999999888766665533
No 479
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=55.67 E-value=58 Score=26.32 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=46.2
Q ss_pred CceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHH---HHh-cCCCcEEEeCchHHHHHHhccCccccC
Q 013392 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARL-RKGISILVATPGRLLDHLKHTSSFLHT 168 (444)
Q Consensus 93 ~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iii~T~~~l~~~l~~~~~~~~~ 168 (444)
+.++||.++++.-+....+.+.+.. .....++++....+.. ..+ .+..+|+|+|. .+. ..+++.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidi~ 98 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLG-----HPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA--RGLDIP 98 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHT-----CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT--CSSSCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC-----CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh--cCCCCc
Confidence 4569999999999999888887752 3445556554433322 222 34578999992 112 455666
Q ss_pred CccEEEE
Q 013392 169 NLRWIIF 175 (444)
Q Consensus 169 ~~~lvV~ 175 (444)
.+++||.
T Consensus 99 ~v~~Vi~ 105 (212)
T 3eaq_A 99 QVDLVVH 105 (212)
T ss_dssp CBSEEEE
T ss_pred cCcEEEE
Confidence 7888875
No 480
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=55.39 E-value=7.9 Score=39.53 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=15.8
Q ss_pred cEEEEcCCCCchhHHhHHH
Q 013392 58 HVLVNAATGTGKTVAYLAP 76 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~ 76 (444)
.+++.||+|+|||..+-..
T Consensus 590 ~vLl~Gp~GtGKT~lA~~l 608 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTL 608 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999866543
No 481
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=55.36 E-value=12 Score=31.63 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=16.4
Q ss_pred EEEcCCCCchhHHhHHHHHHHH
Q 013392 60 LVNAATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 60 il~~~tG~GKT~~~~~~~~~~~ 81 (444)
.+.+.-|.|||.++...+....
T Consensus 5 ~vs~KGGvGKTT~a~nLA~~la 26 (269)
T 1cp2_A 5 AIYGKGGIGKSTTTQNLTSGLH 26 (269)
T ss_dssp EEEECTTSSHHHHHHHHHHHHH
T ss_pred EEecCCCCcHHHHHHHHHHHHH
Confidence 3467889999998877666554
No 482
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=55.25 E-value=9.2 Score=33.65 Aligned_cols=13 Identities=38% Similarity=0.583 Sum_probs=11.8
Q ss_pred EEEEcCCCCchhH
Q 013392 59 VLVNAATGTGKTV 71 (444)
Q Consensus 59 ~il~~~tG~GKT~ 71 (444)
++|.|+.|+|||.
T Consensus 7 ~~i~G~~GaGKTT 19 (318)
T 1nij_A 7 TLLTGFLGAGKTT 19 (318)
T ss_dssp EEEEESSSSSCHH
T ss_pred EEEEecCCCCHHH
Confidence 5899999999995
No 483
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=55.23 E-value=6.8 Score=32.17 Aligned_cols=17 Identities=35% Similarity=0.517 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCchhH
Q 013392 55 SGRHVLVNAATGTGKTV 71 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~ 71 (444)
.|+-+.+.||.|+|||.
T Consensus 34 ~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp TTCCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778999999999995
No 484
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=54.83 E-value=7.8 Score=29.99 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCCchhH
Q 013392 55 SGRHVLVNAATGTGKTV 71 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~ 71 (444)
.|.-+.+.||.|+|||.
T Consensus 32 ~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SCEEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56667899999999995
No 485
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=54.32 E-value=9.5 Score=30.76 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchhHHhHH
Q 013392 58 HVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~ 75 (444)
.+.|.|+.|+|||.++-.
T Consensus 4 ~i~i~G~~GsGKst~~~~ 21 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARR 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999976554
No 486
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=54.22 E-value=7 Score=33.71 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=15.6
Q ss_pred cEEEEcCCCCchhHHhHHHH
Q 013392 58 HVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 58 ~~il~~~tG~GKT~~~~~~~ 77 (444)
-+.|.|+.|||||.++-...
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999997665433
No 487
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=54.11 E-value=23 Score=29.43 Aligned_cols=96 Identities=15% Similarity=0.189 Sum_probs=55.6
Q ss_pred CCcHHH-HHHHHHhhcc-cccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHH
Q 013392 300 GSRLAV-LLSILKHLFD-TEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (444)
Q Consensus 300 ~~k~~~-l~~~l~~~~~-~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 377 (444)
..|... +..++..... ...+.+++|.++++..+..+.+.+.+.... .+..+..++++.... .
T Consensus 77 sGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~~~~~~~~~~~~---~ 140 (245)
T 3dkp_A 77 SGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEG-------------TGFRIHMIHKAAVAA---K 140 (245)
T ss_dssp SCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTT-------------SCCCEECCCHHHHHH---T
T ss_pred CcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcc-------------cCceEEEEecCccHH---H
Confidence 345543 4444444422 234558999999999999999888775321 144455454432211 1
Q ss_pred HHHHhhcCCCcEEEEecc-c----cc---CCCCCCCcEEEEc
Q 013392 378 TFGAFKTEKKALLLSTDV-A----AR---GLDFPKVKCIIQY 411 (444)
Q Consensus 378 ~~~~f~~g~~~iLi~t~~-~----~~---G~di~~~~~vi~~ 411 (444)
.......+..+|+|+|+- + .. .+++.+++++|.-
T Consensus 141 ~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViD 182 (245)
T 3dkp_A 141 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVD 182 (245)
T ss_dssp TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEES
T ss_pred HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEe
Confidence 111223456789999952 1 12 4778888887763
No 488
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=53.90 E-value=8.6 Score=31.99 Aligned_cols=21 Identities=10% Similarity=0.234 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCchhHHhHH
Q 013392 55 SGRHVLVNAATGTGKTVAYLA 75 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~~ 75 (444)
.+..+.+.|+.|+|||.++-.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~ 35 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKI 35 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 455688999999999976544
No 489
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=53.73 E-value=53 Score=28.88 Aligned_cols=94 Identities=12% Similarity=0.086 Sum_probs=60.6
Q ss_pred CCCcHHHHHHHHHhhcccccCceEEEEecccchhhhhhhhhhhcccCCCCCchHHHHHhhhccceEEEecCCCHHHHHHH
Q 013392 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (444)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 378 (444)
...|.......+........+.+++|.++++..+..+.+.+...... .+..+..++|+.+.......
T Consensus 54 GsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~ 120 (367)
T 1hv8_A 54 GSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGN-------------KNLKIAKIYGGKAIYPQIKA 120 (367)
T ss_dssp SSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCS-------------SCCCEEEECTTSCHHHHHHH
T ss_pred CChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCC-------------CCceEEEEECCcchHHHHhh
Confidence 44576655444444433445679999999999999998888775321 14567778887776654433
Q ss_pred HHHhhcCCCcEEEEecc-c----c-cCCCCCCCcEEEE
Q 013392 379 FGAFKTEKKALLLSTDV-A----A-RGLDFPKVKCIIQ 410 (444)
Q Consensus 379 ~~~f~~g~~~iLi~t~~-~----~-~G~di~~~~~vi~ 410 (444)
+. ..+|+|+|.- + . ..+++.++++||.
T Consensus 121 ~~-----~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 121 LK-----NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp HH-----TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred cC-----CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 32 4689999853 1 1 2355677777765
No 490
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=53.71 E-value=6.7 Score=33.71 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCchhH
Q 013392 55 SGRHVLVNAATGTGKTV 71 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~ 71 (444)
.|.-+.|.||.|+|||.
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778999999999995
No 491
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=53.36 E-value=8.8 Score=30.29 Aligned_cols=15 Identities=40% Similarity=0.423 Sum_probs=12.7
Q ss_pred cEEEEcCCCCchhHH
Q 013392 58 HVLVNAATGTGKTVA 72 (444)
Q Consensus 58 ~~il~~~tG~GKT~~ 72 (444)
-+.+.|+.|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 468899999999964
No 492
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=53.31 E-value=8.6 Score=34.74 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=19.0
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHhc
Q 013392 59 VLVNAATGTGKTVAYLAPIINHLQS 83 (444)
Q Consensus 59 ~il~~~tG~GKT~~~~~~~~~~~~~ 83 (444)
+++.+..|.|||.++...+......
T Consensus 5 ~~~~gkGG~GKTt~a~~la~~la~~ 29 (374)
T 3igf_A 5 LTFLGKSGVARTKIAIAAAKLLASQ 29 (374)
T ss_dssp EEEECSBHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHC
Confidence 5677888999999888776665543
No 493
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=53.19 E-value=5.7 Score=34.77 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCchhH
Q 013392 55 SGRHVLVNAATGTGKTV 71 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~ 71 (444)
.|+-+.|.||+|+|||.
T Consensus 79 ~Ge~vaivG~sGsGKST 95 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKST 95 (306)
T ss_dssp TTCEEEEESSSCHHHHH
T ss_pred CCCEEEEECCCCchHHH
Confidence 56778999999999995
No 494
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=52.70 E-value=7.2 Score=32.43 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCchhH
Q 013392 55 SGRHVLVNAATGTGKTV 71 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~ 71 (444)
.|+-+.+.||.|+|||.
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778999999999995
No 495
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=52.68 E-value=16 Score=31.48 Aligned_cols=26 Identities=12% Similarity=-0.001 Sum_probs=17.6
Q ss_pred CCcEEEE---cCCCCchhHHhHHHHHHHH
Q 013392 56 GRHVLVN---AATGTGKTVAYLAPIINHL 81 (444)
Q Consensus 56 ~~~~il~---~~tG~GKT~~~~~~~~~~~ 81 (444)
++-+.+. ..-|.|||.++...+....
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la 62 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTD 62 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHH
Confidence 3444444 4789999998877665544
No 496
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=52.63 E-value=21 Score=32.85 Aligned_cols=54 Identities=11% Similarity=-0.039 Sum_probs=36.6
Q ss_pred CceEEEEeccHHHHHHHHHHHHHHhcccCceeeEEEeCCcchhHHHHHhcCCCcEEEeC
Q 013392 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVAT 151 (444)
Q Consensus 93 ~~~vlil~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T 151 (444)
+.++||++|++.-+...++.+++.. .....++++...........+..+|+|||
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~-----~~v~~lhg~~r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAG-----KKVLYLNRKTFESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTT-----CCEEEESTTTHHHHTTHHHHSCCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC-----CeEEEeCCccHHHHHHhhcCCCCeEEEEC
Confidence 4469999999999999998888761 34455555432222222334568999999
No 497
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=52.23 E-value=9.4 Score=32.26 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=19.8
Q ss_pred EcCCCCchhHHhHHHHHHHHhccCCCCCCCCCceEEEE
Q 013392 62 NAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (444)
Q Consensus 62 ~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~vlil 99 (444)
....|.|||.+++..+...... +.+|+++
T Consensus 13 s~kGGvGKTt~a~~LA~~la~~---------g~~Vlli 41 (257)
T 1wcv_1 13 NQKGGVGKTTTAINLAAYLARL---------GKRVLLV 41 (257)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHT---------TCCEEEE
T ss_pred eCCCCchHHHHHHHHHHHHHHC---------CCCEEEE
Confidence 3567899999887766655433 4557765
No 498
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=52.21 E-value=19 Score=35.94 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=35.4
Q ss_pred ccCCccccCCCHH-HHHHHHHHc-CCCCCCHHH--HhHHHhHh---cCCcEEEEcCCCCchhHHhHHHH
Q 013392 16 ASCSFSSLGLHST-LCDQLRERL-GFEAPTKVQ--AQAIPVIL---SGRHVLVNAATGTGKTVAYLAPI 77 (444)
Q Consensus 16 ~~~~~~~~~l~~~-i~~~l~~~~-~~~~~~~~Q--~~~~~~~~---~~~~~il~~~tG~GKT~~~~~~~ 77 (444)
.-+||..+++..+ ..+....+. +=..|+.+. ..|+..++ .++.+++.|..|+|||.++=..+
T Consensus 124 avNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im 192 (783)
T 4db1_A 124 TVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVI 192 (783)
T ss_dssp EECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred ecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHH
Confidence 4466776665433 333332110 111244444 45666665 44679999999999998765433
No 499
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=52.10 E-value=8 Score=32.44 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 013392 55 SGRHVLVNAATGTGKTVAYL 74 (444)
Q Consensus 55 ~~~~~il~~~tG~GKT~~~~ 74 (444)
.+.-+-|.||.|+|||..+-
T Consensus 24 ~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 34457889999999997543
No 500
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=51.99 E-value=12 Score=32.30 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=15.8
Q ss_pred EEcCCCCchhHHhHHHHHHHHh
Q 013392 61 VNAATGTGKTVAYLAPIINHLQ 82 (444)
Q Consensus 61 l~~~tG~GKT~~~~~~~~~~~~ 82 (444)
.....|.|||.++...+.....
T Consensus 10 ~s~KGGvGKTT~a~nLA~~La~ 31 (286)
T 2xj4_A 10 GNEKGGAGKSTIAVHLVTALLY 31 (286)
T ss_dssp CCSSSCTTHHHHHHHHHHHHHH
T ss_pred EcCCCCCCHHHHHHHHHHHHHH
Confidence 3466889999988776665543
Done!