Query 013393
Match_columns 444
No_of_seqs 465 out of 2519
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:24:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 1E-133 3E-138 1017.2 28.8 425 1-434 78-506 (506)
2 PF03141 Methyltransf_29: Puta 99.8 7.5E-21 1.6E-25 194.5 8.6 150 270-436 95-262 (506)
3 COG2226 UbiE Methylase involve 99.7 3.1E-17 6.8E-22 156.4 12.8 101 45-146 52-156 (238)
4 PF01209 Ubie_methyltran: ubiE 99.7 1.7E-17 3.8E-22 158.9 9.0 100 46-146 49-153 (233)
5 PLN02336 phosphoethanolamine N 99.7 6.5E-16 1.4E-20 163.1 17.3 305 46-391 39-369 (475)
6 PLN02233 ubiquinone biosynthes 99.6 4.8E-15 1.1E-19 144.6 16.0 102 46-148 75-184 (261)
7 PF08241 Methyltransf_11: Meth 99.6 9.7E-16 2.1E-20 124.4 7.2 93 49-144 1-95 (95)
8 PTZ00098 phosphoethanolamine N 99.6 5.2E-15 1.1E-19 144.6 12.8 160 17-189 33-212 (263)
9 PLN02244 tocopherol O-methyltr 99.6 1.1E-14 2.3E-19 147.5 15.2 133 45-179 119-278 (340)
10 PF13489 Methyltransf_23: Meth 99.6 5.4E-15 1.2E-19 132.1 8.6 121 46-177 24-161 (161)
11 TIGR02752 MenG_heptapren 2-hep 99.6 7.2E-14 1.6E-18 133.4 16.5 102 46-148 47-153 (231)
12 PLN02396 hexaprenyldihydroxybe 99.5 2.1E-14 4.6E-19 143.7 10.5 133 46-180 133-290 (322)
13 COG2230 Cfa Cyclopropane fatty 99.5 1.1E-14 2.4E-19 141.5 8.1 212 9-234 45-277 (283)
14 PRK14103 trans-aconitate 2-met 99.5 9.6E-14 2.1E-18 134.9 13.3 94 46-148 31-128 (255)
15 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.9E-14 4.1E-19 135.6 7.0 101 46-148 61-163 (243)
16 PF02353 CMAS: Mycolic acid cy 99.5 2.4E-14 5.3E-19 140.3 7.3 201 11-227 37-264 (273)
17 PRK11036 putative S-adenosyl-L 99.5 2E-13 4.4E-18 132.6 13.1 147 25-179 31-207 (255)
18 PRK10258 biotin biosynthesis p 99.5 1.4E-13 3E-18 133.2 11.9 99 45-149 43-143 (251)
19 PRK15068 tRNA mo(5)U34 methylt 99.5 3.5E-13 7.5E-18 135.4 15.1 132 46-179 124-274 (322)
20 PLN02336 phosphoethanolamine N 99.5 3.2E-13 6.9E-18 142.6 14.9 140 46-187 268-422 (475)
21 PRK11207 tellurite resistance 99.5 4.9E-13 1.1E-17 125.1 13.4 136 46-186 32-177 (197)
22 PRK11873 arsM arsenite S-adeno 99.5 9.6E-13 2.1E-17 128.9 14.3 131 46-178 79-229 (272)
23 KOG1540 Ubiquinone biosynthesi 99.4 3.9E-13 8.4E-18 126.9 10.0 106 38-146 95-214 (296)
24 PRK08317 hypothetical protein; 99.4 2.6E-12 5.6E-17 122.1 15.3 117 22-148 5-126 (241)
25 PLN02490 MPBQ/MSBQ methyltrans 99.4 8.3E-13 1.8E-17 132.8 12.0 133 46-184 115-261 (340)
26 TIGR00452 methyltransferase, p 99.4 2.5E-12 5.4E-17 128.3 15.2 130 46-179 123-273 (314)
27 TIGR00477 tehB tellurite resis 99.4 2.4E-12 5.2E-17 120.2 13.8 137 46-187 32-177 (195)
28 smart00828 PKS_MT Methyltransf 99.4 8.7E-13 1.9E-17 125.3 10.9 135 47-184 2-149 (224)
29 PF13847 Methyltransf_31: Meth 99.4 6.6E-13 1.4E-17 118.7 9.4 100 46-148 5-112 (152)
30 PRK15451 tRNA cmo(5)U34 methyl 99.4 1.9E-12 4.1E-17 125.3 13.0 100 46-148 58-166 (247)
31 PRK01683 trans-aconitate 2-met 99.4 1.1E-12 2.5E-17 127.3 11.0 97 45-148 32-132 (258)
32 PF12847 Methyltransf_18: Meth 99.4 8.4E-13 1.8E-17 111.2 8.7 100 46-146 3-111 (112)
33 PRK05785 hypothetical protein; 99.4 1.8E-12 3.8E-17 123.9 9.5 86 46-140 53-141 (226)
34 PRK00107 gidB 16S rRNA methylt 99.4 8.9E-12 1.9E-16 115.6 13.6 116 46-177 47-167 (187)
35 PRK11705 cyclopropane fatty ac 99.4 1.7E-12 3.7E-17 133.3 8.9 178 47-233 170-365 (383)
36 PF13649 Methyltransf_25: Meth 99.3 6.1E-13 1.3E-17 110.6 4.2 92 48-140 1-101 (101)
37 PF08242 Methyltransf_12: Meth 99.3 4.6E-13 9.9E-18 110.7 3.0 93 49-142 1-99 (99)
38 TIGR02072 BioC biotin biosynth 99.3 1.2E-11 2.7E-16 117.6 13.3 98 46-149 36-138 (240)
39 PRK11088 rrmA 23S rRNA methylt 99.3 5E-12 1.1E-16 124.1 10.5 96 46-149 87-184 (272)
40 PRK12335 tellurite resistance 99.3 9.4E-12 2E-16 123.1 12.0 129 47-180 123-260 (287)
41 COG4106 Tam Trans-aconitate me 99.3 3.9E-12 8.4E-17 117.5 8.2 123 43-173 29-151 (257)
42 PRK00121 trmB tRNA (guanine-N( 99.3 9.9E-12 2.1E-16 116.7 11.2 122 45-175 41-177 (202)
43 TIGR00740 methyltransferase, p 99.3 3.7E-11 8.1E-16 115.5 15.1 100 46-148 55-163 (239)
44 COG2264 PrmA Ribosomal protein 99.3 4.8E-11 1E-15 117.1 14.1 143 14-179 142-288 (300)
45 KOG4300 Predicted methyltransf 99.3 1.4E-11 3.1E-16 112.9 9.4 101 47-148 79-184 (252)
46 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 8.9E-11 1.9E-15 110.6 15.1 96 46-147 41-144 (223)
47 KOG1270 Methyltransferases [Co 99.3 5.5E-12 1.2E-16 119.9 6.5 96 46-148 91-197 (282)
48 smart00138 MeTrc Methyltransfe 99.3 1.5E-11 3.2E-16 120.3 9.4 133 14-148 70-244 (264)
49 PF07021 MetW: Methionine bios 99.3 2.5E-11 5.3E-16 111.5 10.0 93 47-148 16-111 (193)
50 TIGR00138 gidB 16S rRNA methyl 99.3 6.4E-11 1.4E-15 109.4 12.7 121 46-179 44-169 (181)
51 PRK00216 ubiE ubiquinone/menaq 99.2 1.4E-10 3.1E-15 110.4 15.0 101 46-147 53-159 (239)
52 TIGR00091 tRNA (guanine-N(7)-) 99.2 9.6E-11 2.1E-15 109.3 12.1 122 46-176 18-155 (194)
53 COG4976 Predicted methyltransf 99.2 1E-11 2.2E-16 115.6 5.3 132 45-180 126-266 (287)
54 PF03848 TehB: Tellurite resis 99.2 9.3E-11 2E-15 108.7 11.4 135 47-186 33-176 (192)
55 TIGR02021 BchM-ChlM magnesium 99.2 1.6E-10 3.5E-15 109.6 13.3 131 45-179 56-206 (219)
56 PF05401 NodS: Nodulation prot 99.2 8.7E-11 1.9E-15 108.1 10.6 100 43-147 42-147 (201)
57 PRK09489 rsmC 16S ribosomal RN 99.2 4.8E-11 1E-15 120.7 9.7 102 47-152 199-309 (342)
58 PRK08287 cobalt-precorrin-6Y C 99.2 5.7E-10 1.2E-14 103.3 15.5 118 46-177 33-154 (187)
59 PF06325 PrmA: Ribosomal prote 99.2 1.6E-10 3.6E-15 114.1 12.4 143 11-179 136-283 (295)
60 TIGR00406 prmA ribosomal prote 99.2 3E-10 6.5E-15 112.5 14.1 116 46-177 161-281 (288)
61 PRK06202 hypothetical protein; 99.2 3.5E-10 7.5E-15 108.3 14.0 98 45-145 61-165 (232)
62 TIGR01983 UbiG ubiquinone bios 99.2 2.7E-10 5.9E-15 108.0 12.8 133 45-179 46-203 (224)
63 PRK04266 fibrillarin; Provisio 99.2 4.7E-10 1E-14 107.2 14.3 132 38-179 69-210 (226)
64 PRK06922 hypothetical protein; 99.2 8.5E-11 1.8E-15 125.6 9.9 100 46-147 420-538 (677)
65 TIGR03587 Pse_Me-ase pseudamin 99.2 1.7E-10 3.7E-15 108.5 10.8 96 46-146 45-142 (204)
66 TIGR00537 hemK_rel_arch HemK-r 99.2 4.2E-10 9.2E-15 103.4 12.7 121 46-178 21-164 (179)
67 PF05175 MTS: Methyltransferas 99.2 7.7E-11 1.7E-15 107.6 7.7 118 20-148 15-142 (170)
68 TIGR02469 CbiT precorrin-6Y C5 99.2 5.9E-10 1.3E-14 95.0 12.7 97 46-146 21-122 (124)
69 PRK00517 prmA ribosomal protei 99.1 8E-10 1.7E-14 107.2 14.4 114 46-178 121-237 (250)
70 PRK05134 bifunctional 3-demeth 99.1 8E-10 1.7E-14 105.6 14.0 131 46-178 50-204 (233)
71 TIGR02081 metW methionine bios 99.1 5.4E-10 1.2E-14 104.1 11.8 122 47-179 16-167 (194)
72 PF08003 Methyltransf_9: Prote 99.1 5E-10 1.1E-14 109.4 11.8 132 44-179 115-267 (315)
73 TIGR03534 RF_mod_PrmC protein- 99.1 1.2E-09 2.6E-14 105.2 14.3 121 46-177 89-239 (251)
74 PRK11188 rrmJ 23S rRNA methylt 99.1 5.6E-10 1.2E-14 105.5 11.3 90 46-147 53-166 (209)
75 KOG1541 Predicted protein carb 99.1 2.4E-10 5.2E-15 106.0 8.1 118 44-173 50-181 (270)
76 TIGR02716 C20_methyl_CrtF C-20 99.1 1.6E-09 3.4E-14 108.2 14.5 98 45-147 150-255 (306)
77 PRK15001 SAM-dependent 23S rib 99.1 4.5E-10 9.8E-15 114.7 10.7 101 46-148 230-342 (378)
78 PRK14967 putative methyltransf 99.1 3.2E-09 6.9E-14 101.2 15.8 120 47-176 39-181 (223)
79 PF05219 DREV: DREV methyltran 99.1 8.7E-10 1.9E-14 105.5 11.7 169 12-217 66-255 (265)
80 TIGR03840 TMPT_Se_Te thiopurin 99.1 4E-10 8.7E-15 106.7 9.4 99 47-145 37-151 (213)
81 TIGR01177 conserved hypothetic 99.1 6.8E-10 1.5E-14 112.0 11.6 121 47-179 185-315 (329)
82 PRK00377 cbiT cobalt-precorrin 99.1 2.4E-09 5.2E-14 100.1 13.7 115 47-174 43-165 (198)
83 PRK14968 putative methyltransf 99.0 3.8E-09 8.2E-14 97.0 13.8 122 46-177 25-171 (188)
84 PTZ00146 fibrillarin; Provisio 99.0 3.9E-09 8.5E-14 103.6 14.5 134 38-179 129-271 (293)
85 PRK13944 protein-L-isoaspartat 99.0 2.1E-09 4.5E-14 101.2 12.0 93 46-146 74-173 (205)
86 KOG3010 Methyltransferase [Gen 99.0 4.2E-10 9E-15 105.9 6.8 115 46-173 35-158 (261)
87 PLN02585 magnesium protoporphy 99.0 2.8E-09 6.1E-14 106.6 13.0 128 46-178 146-298 (315)
88 PRK14121 tRNA (guanine-N(7)-)- 99.0 1.3E-09 2.7E-14 111.2 10.4 102 46-148 124-237 (390)
89 PRK07580 Mg-protoporphyrin IX 99.0 5.8E-09 1.3E-13 99.2 14.0 130 46-179 65-214 (230)
90 PLN02232 ubiquinone biosynthes 99.0 1.1E-09 2.5E-14 99.0 7.8 78 69-147 2-82 (160)
91 PRK13942 protein-L-isoaspartat 99.0 3.5E-09 7.6E-14 100.2 11.2 93 46-145 78-175 (212)
92 COG2813 RsmC 16S RNA G1207 met 99.0 2.1E-09 4.5E-14 105.2 9.5 150 16-176 138-296 (300)
93 COG4123 Predicted O-methyltran 99.0 3E-09 6.4E-14 102.0 10.3 124 45-177 45-192 (248)
94 PRK13255 thiopurine S-methyltr 98.9 3.3E-09 7.2E-14 100.8 9.8 98 47-144 40-153 (218)
95 PRK14966 unknown domain/N5-glu 98.9 7.6E-09 1.6E-13 106.2 12.1 121 47-177 254-403 (423)
96 TIGR00080 pimt protein-L-isoas 98.9 1.2E-08 2.7E-13 96.5 12.7 93 46-146 79-177 (215)
97 cd02440 AdoMet_MTases S-adenos 98.9 6.5E-09 1.4E-13 83.9 8.8 98 47-145 1-103 (107)
98 PLN03075 nicotianamine synthas 98.9 6.4E-09 1.4E-13 102.5 9.7 102 44-146 123-233 (296)
99 PF13659 Methyltransf_26: Meth 98.9 2E-09 4.4E-14 91.2 5.2 101 47-147 3-116 (117)
100 PRK07402 precorrin-6B methylas 98.9 6.4E-08 1.4E-12 90.3 15.5 98 46-148 42-144 (196)
101 TIGR03438 probable methyltrans 98.9 1.5E-08 3.2E-13 101.0 11.7 103 46-148 65-179 (301)
102 PRK09328 N5-glutamine S-adenos 98.9 2E-08 4.4E-13 98.2 12.3 122 46-177 110-260 (275)
103 PF05148 Methyltransf_8: Hypot 98.9 8.4E-09 1.8E-13 95.8 8.9 111 46-179 74-185 (219)
104 KOG1271 Methyltransferases [Ge 98.8 2.2E-08 4.7E-13 90.6 10.6 123 45-177 68-203 (227)
105 TIGR00438 rrmJ cell division p 98.8 1.6E-08 3.4E-13 93.8 10.0 89 47-146 35-146 (188)
106 TIGR03533 L3_gln_methyl protei 98.8 4.2E-08 9E-13 97.0 13.3 120 46-177 123-272 (284)
107 TIGR00536 hemK_fam HemK family 98.8 3.9E-08 8.4E-13 97.2 11.8 121 46-177 116-267 (284)
108 PF06080 DUF938: Protein of un 98.8 2.6E-08 5.6E-13 92.8 9.8 156 17-179 3-192 (204)
109 PRK00811 spermidine synthase; 98.8 7.3E-08 1.6E-12 95.3 13.6 106 44-150 76-195 (283)
110 PRK00312 pcm protein-L-isoaspa 98.8 5.7E-08 1.2E-12 91.7 12.1 95 46-147 80-176 (212)
111 PRK10901 16S rRNA methyltransf 98.8 3.2E-08 6.9E-13 103.3 10.2 104 46-150 246-376 (427)
112 KOG3045 Predicted RNA methylas 98.7 2.9E-08 6.3E-13 94.2 8.5 112 45-180 181-292 (325)
113 TIGR03704 PrmC_rel_meth putati 98.7 2.3E-07 5E-12 90.1 14.6 120 46-177 88-238 (251)
114 COG2242 CobL Precorrin-6B meth 98.7 2.9E-07 6.4E-12 84.2 13.9 121 38-175 31-157 (187)
115 PRK01544 bifunctional N5-gluta 98.7 5.7E-08 1.2E-12 103.4 10.7 295 45-410 139-483 (506)
116 PRK11805 N5-glutamine S-adenos 98.7 1.2E-07 2.7E-12 94.6 12.5 118 46-175 135-282 (307)
117 PRK14901 16S rRNA methyltransf 98.7 1E-07 2.3E-12 99.7 12.4 122 46-173 254-407 (434)
118 KOG2940 Predicted methyltransf 98.7 1.2E-08 2.7E-13 95.2 4.5 128 47-180 75-228 (325)
119 PF05891 Methyltransf_PK: AdoM 98.7 6.3E-08 1.4E-12 90.8 8.3 135 43-180 54-202 (218)
120 TIGR00446 nop2p NOL1/NOP2/sun 98.7 5.2E-08 1.1E-12 95.3 7.8 102 47-149 74-202 (264)
121 PRK14904 16S rRNA methyltransf 98.7 1.1E-07 2.3E-12 100.0 10.7 103 46-150 252-381 (445)
122 TIGR00563 rsmB ribosomal RNA s 98.7 9.5E-08 2E-12 99.8 10.0 104 46-150 240-372 (426)
123 PF02390 Methyltransf_4: Putat 98.6 1.7E-07 3.6E-12 87.7 10.2 121 47-176 20-157 (195)
124 PRK13256 thiopurine S-methyltr 98.6 1.6E-07 3.4E-12 89.5 10.0 101 46-146 45-163 (226)
125 PHA03411 putative methyltransf 98.6 2.6E-07 5.6E-12 90.0 11.3 129 46-184 66-220 (279)
126 PRK04457 spermidine synthase; 98.6 1.6E-07 3.4E-12 91.8 9.1 98 44-146 66-177 (262)
127 PRK01581 speE spermidine synth 98.6 3.8E-07 8.3E-12 92.1 11.6 127 43-179 149-297 (374)
128 PRK13943 protein-L-isoaspartat 98.6 1.8E-07 3.9E-12 93.9 9.2 93 46-146 82-180 (322)
129 PRK14903 16S rRNA methyltransf 98.6 1.1E-07 2.4E-12 99.4 7.6 104 46-150 239-370 (431)
130 COG2890 HemK Methylase of poly 98.6 3.8E-07 8.3E-12 89.9 11.0 119 47-177 113-261 (280)
131 PLN02366 spermidine synthase 98.6 9.4E-07 2E-11 88.2 13.9 107 44-151 91-211 (308)
132 TIGR00417 speE spermidine synt 98.6 1.1E-06 2.3E-11 86.4 14.0 105 44-149 72-189 (270)
133 KOG1975 mRNA cap methyltransfe 98.6 2.1E-07 4.6E-12 91.0 8.6 103 46-149 119-240 (389)
134 PF01739 CheR: CheR methyltran 98.6 1.8E-07 3.9E-12 87.4 7.7 134 15-149 3-178 (196)
135 PRK14902 16S rRNA methyltransf 98.5 4.7E-07 1E-11 95.1 11.6 103 46-150 252-383 (444)
136 smart00650 rADc Ribosomal RNA 98.5 4.3E-07 9.2E-12 82.7 9.5 93 47-145 16-112 (169)
137 PRK03612 spermidine synthase; 98.5 6.3E-07 1.4E-11 95.9 12.2 122 44-175 297-440 (521)
138 COG2519 GCD14 tRNA(1-methylade 98.5 1.2E-06 2.7E-11 83.6 12.6 120 39-176 92-217 (256)
139 PF01135 PCMT: Protein-L-isoas 98.5 2.1E-07 4.5E-12 87.9 6.9 109 22-145 58-171 (209)
140 PF03291 Pox_MCEL: mRNA cappin 98.5 4.5E-07 9.7E-12 91.4 8.2 104 44-148 62-188 (331)
141 PRK11783 rlmL 23S rRNA m(2)G24 98.4 1.1E-06 2.4E-11 97.3 11.0 122 46-177 540-678 (702)
142 COG2518 Pcm Protein-L-isoaspar 98.4 1.5E-06 3.2E-11 81.2 10.2 95 39-145 70-168 (209)
143 PRK13168 rumA 23S rRNA m(5)U19 98.4 3.5E-06 7.5E-11 88.5 14.2 119 46-179 299-424 (443)
144 PLN02672 methionine S-methyltr 98.4 1.4E-06 3E-11 99.1 11.0 123 46-177 120-301 (1082)
145 COG0220 Predicted S-adenosylme 98.4 9.6E-07 2.1E-11 84.3 8.2 100 47-148 51-166 (227)
146 PRK10909 rsmD 16S rRNA m(2)G96 98.4 4.8E-06 1E-10 78.1 12.4 133 4-148 21-161 (199)
147 PF00891 Methyltransf_2: O-met 98.4 2E-06 4.3E-11 82.7 9.9 94 44-148 100-201 (241)
148 PLN02781 Probable caffeoyl-CoA 98.4 1.8E-06 4E-11 83.0 9.4 97 45-146 69-178 (234)
149 TIGR00478 tly hemolysin TlyA f 98.3 3.6E-06 7.8E-11 80.5 11.1 118 45-177 76-215 (228)
150 PF08704 GCD14: tRNA methyltra 98.3 4.5E-06 9.9E-11 80.6 11.7 121 38-176 37-168 (247)
151 PF10294 Methyltransf_16: Puta 98.3 2E-06 4.4E-11 78.8 8.6 101 45-148 46-158 (173)
152 PHA03412 putative methyltransf 98.3 2.2E-06 4.7E-11 81.8 8.9 94 47-141 52-158 (241)
153 PRK15128 23S rRNA m(5)C1962 me 98.3 4.8E-06 1E-10 86.1 12.0 102 46-148 222-341 (396)
154 KOG2361 Predicted methyltransf 98.3 2.5E-06 5.3E-11 80.7 8.7 97 47-148 74-185 (264)
155 PF12147 Methyltransf_20: Puta 98.3 4.9E-06 1.1E-10 81.0 10.9 156 20-177 111-296 (311)
156 KOG3987 Uncharacterized conser 98.3 1.2E-06 2.5E-11 80.9 5.3 122 10-145 84-206 (288)
157 TIGR00479 rumA 23S rRNA (uraci 98.3 1.4E-05 3.1E-10 83.6 14.3 119 46-178 294-419 (431)
158 PRK11727 23S rRNA mA1618 methy 98.3 1.9E-05 4.1E-10 79.2 14.3 97 20-116 90-197 (321)
159 PF07942 N2227: N2227-like pro 98.2 1.6E-05 3.6E-10 77.5 13.3 132 45-179 57-242 (270)
160 PF11968 DUF3321: Putative met 98.2 6.4E-06 1.4E-10 77.2 10.0 117 46-179 53-181 (219)
161 PF05724 TPMT: Thiopurine S-me 98.2 7.2E-06 1.6E-10 78.0 10.4 127 46-179 39-190 (218)
162 PRK01544 bifunctional N5-gluta 98.2 9.6E-06 2.1E-10 86.5 12.3 102 44-147 347-463 (506)
163 PRK10611 chemotaxis methyltran 98.2 6.5E-06 1.4E-10 81.3 10.2 103 46-148 117-264 (287)
164 COG1352 CheR Methylase of chem 98.2 1.1E-05 2.4E-10 78.8 10.4 133 14-148 68-243 (268)
165 COG1041 Predicted DNA modifica 98.1 1.7E-05 3.7E-10 79.4 11.3 116 47-179 200-330 (347)
166 PRK03522 rumB 23S rRNA methylu 98.1 1.3E-05 2.8E-10 80.5 10.6 98 46-148 175-276 (315)
167 KOG2899 Predicted methyltransf 98.1 1.3E-05 2.8E-10 75.9 9.3 96 46-146 60-209 (288)
168 COG0500 SmtA SAM-dependent met 98.1 2.1E-05 4.5E-10 66.5 9.7 100 48-150 52-159 (257)
169 COG2521 Predicted archaeal met 98.1 8E-06 1.7E-10 76.9 7.3 132 45-178 135-276 (287)
170 KOG1269 SAM-dependent methyltr 98.1 5.3E-06 1.1E-10 84.4 6.5 103 38-144 107-213 (364)
171 KOG1499 Protein arginine N-met 98.0 7E-06 1.5E-10 81.7 6.0 95 46-143 62-164 (346)
172 TIGR02085 meth_trns_rumB 23S r 98.0 7.6E-05 1.6E-09 76.8 13.3 118 46-179 235-356 (374)
173 PLN02476 O-methyltransferase 98.0 1.4E-05 3.1E-10 78.4 7.4 97 44-145 118-227 (278)
174 PF05185 PRMT5: PRMT5 arginine 98.0 1.5E-05 3.2E-10 83.6 7.3 120 21-143 163-294 (448)
175 PF01596 Methyltransf_3: O-met 98.0 1.9E-05 4E-10 74.4 7.1 97 45-146 46-155 (205)
176 COG4122 Predicted O-methyltran 98.0 3.3E-05 7.2E-10 73.1 8.6 96 45-145 60-165 (219)
177 PRK14896 ksgA 16S ribosomal RN 97.9 4.2E-05 9.1E-10 74.6 8.3 67 46-116 31-99 (258)
178 PRK00274 ksgA 16S ribosomal RN 97.9 3.3E-05 7.2E-10 75.9 7.6 68 46-116 44-113 (272)
179 KOG1331 Predicted methyltransf 97.9 9E-06 2E-10 78.8 3.2 98 46-150 47-147 (293)
180 KOG1661 Protein-L-isoaspartate 97.8 7E-05 1.5E-09 69.6 8.6 97 39-145 80-192 (237)
181 COG2263 Predicted RNA methylas 97.8 4.6E-05 9.9E-10 69.9 7.2 116 45-177 46-166 (198)
182 KOG2904 Predicted methyltransf 97.8 8.9E-05 1.9E-09 71.5 9.2 99 47-147 151-286 (328)
183 PRK11933 yebU rRNA (cytosine-C 97.8 4.5E-05 9.9E-10 80.3 7.7 121 24-149 94-245 (470)
184 COG3963 Phospholipid N-methylt 97.8 0.00012 2.5E-09 65.8 8.8 100 47-146 51-156 (194)
185 PF01170 UPF0020: Putative RNA 97.8 0.00023 4.9E-09 65.6 10.5 117 47-177 31-169 (179)
186 PLN02823 spermine synthase 97.7 0.00034 7.4E-09 70.8 12.6 99 44-148 103-222 (336)
187 PRK04338 N(2),N(2)-dimethylgua 97.7 9.3E-05 2E-09 76.2 8.0 97 46-148 59-160 (382)
188 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.7 4.7E-05 1E-09 73.9 5.5 134 45-178 57-238 (256)
189 PLN02589 caffeoyl-CoA O-methyl 97.7 9.7E-05 2.1E-09 71.5 7.0 97 44-145 79-189 (247)
190 TIGR00095 RNA methyltransferas 97.6 0.00082 1.8E-08 62.5 12.6 133 4-147 17-160 (189)
191 TIGR00755 ksgA dimethyladenosi 97.6 0.00038 8.2E-09 67.6 10.8 64 46-116 31-102 (253)
192 PTZ00338 dimethyladenosine tra 97.6 0.00018 4E-09 71.5 8.3 69 46-116 38-109 (294)
193 PRK04148 hypothetical protein; 97.6 0.00056 1.2E-08 59.9 10.0 90 45-145 17-108 (134)
194 COG0421 SpeE Spermidine syntha 97.6 0.00058 1.3E-08 67.3 11.4 105 43-153 75-197 (282)
195 PF02527 GidB: rRNA small subu 97.5 0.00064 1.4E-08 62.9 10.2 118 47-177 51-173 (184)
196 PF02475 Met_10: Met-10+ like- 97.5 0.00031 6.7E-09 65.9 7.5 119 8-143 75-199 (200)
197 PRK11760 putative 23S rRNA C24 97.4 0.0044 9.5E-08 62.4 15.1 115 46-172 213-332 (357)
198 PRK00536 speE spermidine synth 97.4 0.0015 3.2E-08 63.8 11.4 113 42-173 70-193 (262)
199 PF08241 Methyltransf_11: Meth 97.4 7.5E-05 1.6E-09 59.9 2.0 91 293-389 1-95 (95)
200 KOG2915 tRNA(1-methyladenosine 97.4 0.0038 8.2E-08 60.4 13.1 125 25-176 94-232 (314)
201 PRK05031 tRNA (uracil-5-)-meth 97.3 0.0018 3.9E-08 66.3 11.8 116 47-179 209-343 (362)
202 TIGR00308 TRM1 tRNA(guanine-26 97.3 0.00051 1.1E-08 70.5 7.3 137 4-146 3-147 (374)
203 PF09243 Rsm22: Mitochondrial 97.3 0.0026 5.6E-08 62.7 11.8 127 43-179 32-168 (274)
204 KOG3191 Predicted N6-DNA-methy 97.3 0.0016 3.5E-08 59.4 9.1 121 45-175 44-189 (209)
205 COG1092 Predicted SAM-dependen 97.3 0.0017 3.7E-08 66.8 10.4 106 45-150 218-340 (393)
206 TIGR02143 trmA_only tRNA (urac 97.3 0.00071 1.5E-08 69.0 7.7 115 47-178 200-333 (353)
207 KOG3178 Hydroxyindole-O-methyl 97.3 0.0016 3.5E-08 65.2 9.7 95 45-147 178-276 (342)
208 PF01564 Spermine_synth: Sperm 97.2 0.00084 1.8E-08 65.1 7.2 125 44-173 76-214 (246)
209 PF01269 Fibrillarin: Fibrilla 97.1 0.0028 6E-08 59.9 9.5 133 38-178 70-211 (229)
210 KOG3201 Uncharacterized conser 97.1 0.00025 5.3E-09 63.4 2.4 74 106-187 101-175 (201)
211 PF01728 FtsJ: FtsJ-like methy 97.1 0.00063 1.4E-08 62.4 5.1 91 45-147 24-140 (181)
212 COG0357 GidB Predicted S-adeno 97.1 0.0077 1.7E-07 57.0 12.4 120 45-178 68-194 (215)
213 TIGR03439 methyl_EasF probable 97.1 0.004 8.7E-08 62.6 11.1 100 47-146 79-197 (319)
214 KOG1500 Protein arginine N-met 97.1 0.0013 2.8E-08 65.2 6.7 96 45-144 178-280 (517)
215 PF02384 N6_Mtase: N-6 DNA Met 97.1 0.0017 3.7E-08 64.8 7.9 119 22-148 32-185 (311)
216 KOG2352 Predicted spermine/spe 97.1 0.0027 5.9E-08 66.1 9.4 98 47-146 51-161 (482)
217 COG2265 TrmA SAM-dependent met 97.0 0.0084 1.8E-07 62.7 13.0 118 46-176 295-417 (432)
218 COG0293 FtsJ 23S rRNA methylas 97.0 0.0065 1.4E-07 56.9 10.8 90 46-146 47-159 (205)
219 COG4627 Uncharacterized protei 97.0 0.00043 9.4E-09 61.4 2.7 75 99-174 38-133 (185)
220 PF10672 Methyltrans_SAM: S-ad 97.0 0.0012 2.6E-08 65.2 5.6 104 46-149 125-241 (286)
221 KOG1709 Guanidinoacetate methy 97.0 0.0043 9.2E-08 58.2 8.8 109 22-145 88-205 (271)
222 PF03602 Cons_hypoth95: Conser 96.9 0.0018 4E-08 59.9 6.3 135 3-148 8-155 (183)
223 TIGR02987 met_A_Alw26 type II 96.9 0.0043 9.2E-08 66.7 10.1 108 45-152 32-202 (524)
224 COG0144 Sun tRNA and rRNA cyto 96.9 0.0034 7.3E-08 64.2 8.8 122 25-150 140-292 (355)
225 PRK00107 gidB 16S rRNA methylt 96.9 0.0033 7.1E-08 58.4 7.6 153 267-435 27-187 (187)
226 KOG2798 Putative trehalase [Ca 96.9 0.0068 1.5E-07 59.8 9.7 72 107-179 258-337 (369)
227 KOG3420 Predicted RNA methylas 96.8 0.0018 3.9E-08 57.0 4.7 85 27-116 35-122 (185)
228 PF13489 Methyltransf_23: Meth 96.8 0.00034 7.4E-09 61.9 0.1 96 287-393 21-117 (161)
229 COG3897 Predicted methyltransf 96.8 0.0037 8E-08 57.8 6.8 99 44-148 79-180 (218)
230 KOG0820 Ribosomal RNA adenine 96.8 0.0025 5.4E-08 61.7 5.8 74 38-116 55-131 (315)
231 COG0030 KsgA Dimethyladenosine 96.8 0.0059 1.3E-07 59.4 8.4 92 14-116 9-103 (259)
232 COG2520 Predicted methyltransf 96.7 0.018 3.9E-07 58.2 11.8 141 14-172 168-313 (341)
233 PF08123 DOT1: Histone methyla 96.6 0.007 1.5E-07 57.0 7.9 96 47-144 45-156 (205)
234 KOG1663 O-methyltransferase [S 96.6 0.023 5E-07 53.9 10.8 96 45-145 74-182 (237)
235 COG1189 Predicted rRNA methyla 96.5 0.076 1.6E-06 50.8 13.9 125 44-178 79-223 (245)
236 COG0742 N6-adenine-specific me 96.2 0.07 1.5E-06 49.4 11.7 137 3-148 9-156 (187)
237 PRK10258 biotin biosynthesis p 96.2 0.012 2.5E-07 56.9 7.0 100 284-390 38-139 (251)
238 PLN02668 indole-3-acetate carb 96.2 0.03 6.4E-07 57.6 9.8 78 45-123 64-176 (386)
239 PF04816 DUF633: Family of unk 96.1 0.065 1.4E-06 50.5 11.2 118 48-179 1-124 (205)
240 PRK11783 rlmL 23S rRNA m(2)G24 96.1 0.022 4.8E-07 63.4 9.0 122 290-413 540-678 (702)
241 COG4798 Predicted methyltransf 96.0 0.097 2.1E-06 48.5 11.2 137 38-179 45-205 (238)
242 PF05958 tRNA_U5-meth_tr: tRNA 96.0 0.017 3.7E-07 59.0 7.0 55 47-101 199-255 (352)
243 PLN02233 ubiquinone biosynthes 96.0 0.017 3.7E-07 56.4 6.7 96 290-391 75-182 (261)
244 PRK00050 16S rRNA m(4)C1402 me 95.9 0.0097 2.1E-07 59.1 4.8 70 47-118 22-100 (296)
245 PTZ00098 phosphoethanolamine N 95.7 0.011 2.4E-07 57.8 4.4 99 290-392 54-157 (263)
246 smart00828 PKS_MT Methyltransf 95.7 0.011 2.3E-07 55.9 4.1 113 291-410 2-139 (224)
247 COG4262 Predicted spermidine s 95.7 0.048 1E-06 55.0 8.7 131 43-178 288-435 (508)
248 COG1889 NOP1 Fibrillarin-like 95.7 0.23 5.1E-06 46.4 12.5 126 47-179 79-214 (231)
249 PF13679 Methyltransf_32: Meth 95.6 0.13 2.9E-06 45.2 10.3 99 43-150 24-135 (141)
250 TIGR02752 MenG_heptapren 2-hep 95.6 0.026 5.6E-07 53.6 6.2 97 290-392 47-152 (231)
251 PF03492 Methyltransf_7: SAM d 95.6 0.055 1.2E-06 54.9 8.8 79 44-123 16-121 (334)
252 PF03059 NAS: Nicotianamine sy 95.6 0.075 1.6E-06 52.3 9.4 102 44-146 120-230 (276)
253 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.5 0.0061 1.3E-07 60.3 1.7 101 47-148 88-221 (283)
254 PF02353 CMAS: Mycolic acid cy 95.5 0.0093 2E-07 58.7 2.8 108 274-390 52-165 (273)
255 PLN02244 tocopherol O-methyltr 95.4 0.022 4.7E-07 57.9 5.3 98 287-391 117-223 (340)
256 PRK15068 tRNA mo(5)U34 methylt 95.2 0.026 5.6E-07 56.9 5.0 94 290-390 124-225 (322)
257 COG0116 Predicted N6-adenine-s 95.2 0.095 2E-06 53.6 9.0 102 46-148 193-346 (381)
258 TIGR00138 gidB 16S rRNA methyl 95.2 0.052 1.1E-06 50.0 6.5 130 267-411 25-163 (181)
259 PF09445 Methyltransf_15: RNA 95.1 0.04 8.7E-07 50.0 5.4 68 47-115 2-76 (163)
260 PRK11705 cyclopropane fatty ac 95.1 0.026 5.6E-07 58.3 4.6 95 290-391 169-267 (383)
261 COG4076 Predicted RNA methylas 95.0 0.023 4.9E-07 52.3 3.6 90 47-143 35-132 (252)
262 PF00398 RrnaAD: Ribosomal RNA 94.9 0.06 1.3E-06 52.6 6.6 107 14-138 9-123 (262)
263 PRK14103 trans-aconitate 2-met 94.9 0.036 7.8E-07 53.7 4.8 99 284-390 25-125 (255)
264 KOG2187 tRNA uracil-5-methyltr 94.8 0.039 8.4E-07 58.0 5.0 55 46-101 385-442 (534)
265 PRK08317 hypothetical protein; 94.8 0.057 1.2E-06 50.8 5.8 99 288-391 19-124 (241)
266 PF13578 Methyltransf_24: Meth 94.6 0.013 2.8E-07 48.6 0.9 93 49-145 1-104 (106)
267 PRK08287 cobalt-precorrin-6Y C 94.6 0.093 2E-06 48.2 6.6 131 265-409 11-150 (187)
268 KOG2198 tRNA cytosine-5-methyl 94.4 0.18 3.9E-06 51.1 8.5 122 23-149 137-299 (375)
269 PF05971 Methyltransf_10: Prot 94.4 0.14 3.1E-06 50.9 7.7 94 20-116 81-185 (299)
270 KOG4589 Cell division protein 94.3 0.22 4.7E-06 46.0 8.1 92 38-145 66-183 (232)
271 PF01861 DUF43: Protein of unk 94.3 1.1 2.3E-05 43.2 13.1 168 45-227 45-220 (243)
272 PRK01683 trans-aconitate 2-met 94.3 0.096 2.1E-06 50.6 6.2 99 285-390 28-129 (258)
273 TIGR00537 hemK_rel_arch HemK-r 94.2 0.07 1.5E-06 48.7 4.9 116 290-411 21-161 (179)
274 TIGR00477 tehB tellurite resis 94.2 0.041 8.9E-07 51.2 3.3 93 290-389 32-131 (195)
275 PRK11207 tellurite resistance 94.2 0.03 6.5E-07 52.2 2.4 93 290-389 32-132 (197)
276 PF01209 Ubie_methyltran: ubiE 94.2 0.031 6.7E-07 53.7 2.5 114 267-391 33-153 (233)
277 KOG1122 tRNA and rRNA cytosine 94.2 0.13 2.9E-06 52.8 7.1 119 27-150 227-375 (460)
278 PF04672 Methyltransf_19: S-ad 94.0 0.16 3.4E-06 49.6 7.1 100 44-148 68-192 (267)
279 TIGR01934 MenG_MenH_UbiE ubiqu 93.9 0.12 2.6E-06 48.2 5.9 98 288-391 39-143 (223)
280 TIGR02072 BioC biotin biosynth 93.8 0.1 2.3E-06 49.1 5.5 96 290-391 36-135 (240)
281 PRK11036 putative S-adenosyl-L 93.8 0.053 1.2E-06 52.5 3.4 94 290-390 46-148 (255)
282 PRK00121 trmB tRNA (guanine-N( 93.7 0.078 1.7E-06 49.6 4.2 121 289-411 41-177 (202)
283 COG5459 Predicted rRNA methyla 93.7 0.13 2.9E-06 51.6 5.9 48 101-148 177-227 (484)
284 PRK00377 cbiT cobalt-precorrin 93.5 0.24 5.1E-06 46.1 7.2 147 256-413 9-168 (198)
285 TIGR00452 methyltransferase, p 93.5 0.14 3.1E-06 51.4 6.0 95 289-390 122-224 (314)
286 COG1064 AdhP Zn-dependent alco 93.5 0.22 4.8E-06 50.3 7.2 99 37-148 162-261 (339)
287 PRK13699 putative methylase; P 93.4 0.19 4E-06 48.2 6.3 82 94-188 4-101 (227)
288 TIGR01444 fkbM_fam methyltrans 93.3 0.14 3E-06 44.6 4.9 35 47-81 1-39 (143)
289 PF06962 rRNA_methylase: Putat 93.0 0.25 5.4E-06 43.6 6.0 107 67-177 2-123 (140)
290 smart00138 MeTrc Methyltransfe 92.8 0.25 5.3E-06 48.4 6.4 132 259-394 70-245 (264)
291 KOG3115 Methyltransferase-like 92.7 0.19 4.2E-06 46.9 5.0 27 47-73 63-93 (249)
292 PRK12335 tellurite resistance 92.4 0.065 1.4E-06 53.0 1.6 113 291-412 123-256 (287)
293 PRK11088 rrmA 23S rRNA methylt 92.2 0.29 6.2E-06 47.9 6.0 102 289-402 86-193 (272)
294 PF08242 Methyltransf_12: Meth 92.1 0.095 2.1E-06 42.6 2.1 90 293-387 1-99 (99)
295 TIGR01983 UbiG ubiquinone bios 91.9 0.36 7.9E-06 45.3 6.1 96 289-391 46-149 (224)
296 PLN02396 hexaprenyldihydroxybe 91.7 0.24 5.3E-06 49.9 4.9 94 291-391 134-235 (322)
297 PF06859 Bin3: Bicoid-interact 91.5 0.11 2.4E-06 43.8 1.8 40 108-148 1-46 (110)
298 PLN02232 ubiquinone biosynthes 91.4 0.15 3.2E-06 45.9 2.7 54 336-393 30-83 (160)
299 PRK15001 SAM-dependent 23S rib 91.3 2.8 6.1E-05 43.3 12.2 94 47-146 47-142 (378)
300 KOG2793 Putative N2,N2-dimethy 91.2 1.6 3.5E-05 42.3 9.7 99 45-146 87-199 (248)
301 KOG0822 Protein kinase inhibit 91.1 0.76 1.7E-05 48.7 7.8 121 21-143 345-475 (649)
302 PF05401 NodS: Nodulation prot 90.9 0.17 3.8E-06 47.1 2.6 139 283-433 38-193 (201)
303 PF10354 DUF2431: Domain of un 90.4 4.2 9.2E-05 36.9 11.3 118 51-178 3-151 (166)
304 PRK06202 hypothetical protein; 90.4 1 2.2E-05 42.9 7.6 104 284-391 56-166 (232)
305 PF12847 Methyltransf_18: Meth 90.4 0.19 4E-06 41.6 2.2 96 291-391 4-111 (112)
306 PRK14968 putative methyltransf 90.3 0.65 1.4E-05 42.1 6.0 118 289-411 24-169 (188)
307 PRK09328 N5-glutamine S-adenos 90.3 1.3 2.9E-05 42.9 8.6 135 290-434 110-275 (275)
308 TIGR00438 rrmJ cell division p 90.1 0.6 1.3E-05 42.9 5.6 129 290-433 34-186 (188)
309 KOG1099 SAM-dependent methyltr 89.8 0.24 5.2E-06 47.1 2.6 111 44-169 41-182 (294)
310 PRK00517 prmA ribosomal protei 89.7 0.88 1.9E-05 44.0 6.7 108 290-411 121-234 (250)
311 TIGR00406 prmA ribosomal prote 89.7 0.52 1.1E-05 46.7 5.1 111 290-410 161-278 (288)
312 PF07091 FmrO: Ribosomal RNA m 89.7 0.99 2.1E-05 43.7 6.8 129 45-177 106-242 (251)
313 COG3129 Predicted SAM-dependen 89.6 0.81 1.8E-05 43.7 5.9 108 7-116 42-161 (292)
314 PRK05134 bifunctional 3-demeth 89.4 0.53 1.1E-05 44.7 4.8 95 290-391 50-151 (233)
315 KOG1596 Fibrillarin and relate 89.1 2.8 6.1E-05 40.4 9.1 102 38-149 153-264 (317)
316 PRK15451 tRNA cmo(5)U34 methyl 89.0 0.27 5.8E-06 47.5 2.4 97 290-392 58-165 (247)
317 PTZ00146 fibrillarin; Provisio 88.7 0.33 7.1E-06 48.2 2.8 97 284-389 130-235 (293)
318 PF00891 Methyltransf_2: O-met 88.6 0.64 1.4E-05 44.4 4.7 103 282-391 94-199 (241)
319 PLN02490 MPBQ/MSBQ methyltrans 88.5 0.76 1.6E-05 46.7 5.4 115 290-410 115-251 (340)
320 TIGR00740 methyltransferase, p 88.5 0.27 5.7E-06 47.1 2.0 96 290-392 55-162 (239)
321 PRK05785 hypothetical protein; 88.3 0.85 1.8E-05 43.5 5.4 88 290-385 53-141 (226)
322 cd02440 AdoMet_MTases S-adenos 88.2 0.56 1.2E-05 36.7 3.4 94 292-390 2-103 (107)
323 PRK11188 rrmJ 23S rRNA methylt 87.9 1.1 2.4E-05 42.1 5.8 129 290-434 53-206 (209)
324 TIGR03534 RF_mod_PrmC protein- 87.8 0.62 1.3E-05 44.5 4.1 117 290-410 89-236 (251)
325 COG2384 Predicted SAM-dependen 87.7 16 0.00035 34.8 13.2 117 47-178 19-142 (226)
326 COG4627 Uncharacterized protei 87.6 0.16 3.5E-06 45.4 -0.1 45 341-389 40-84 (185)
327 PF03269 DUF268: Caenorhabditi 87.6 0.61 1.3E-05 42.1 3.5 71 106-177 61-143 (177)
328 COG2226 UbiE Methylase involve 87.5 0.74 1.6E-05 44.4 4.4 98 289-391 52-156 (238)
329 PRK13944 protein-L-isoaspartat 87.4 0.76 1.6E-05 43.0 4.3 87 290-390 74-172 (205)
330 PF04989 CmcI: Cephalosporin h 87.3 1.5 3.3E-05 41.3 6.2 97 46-145 34-146 (206)
331 PRK11873 arsM arsenite S-adeno 87.1 0.47 1E-05 46.3 2.8 95 290-391 79-183 (272)
332 PRK06922 hypothetical protein; 86.5 0.46 1E-05 52.0 2.6 101 290-392 420-538 (677)
333 TIGR00091 tRNA (guanine-N(7)-) 86.0 0.93 2E-05 42.0 4.1 117 290-410 18-153 (194)
334 KOG2920 Predicted methyltransf 85.8 0.49 1.1E-05 46.4 2.2 42 108-150 196-238 (282)
335 PRK00216 ubiE ubiquinone/menaq 85.6 2.3 5.1E-05 39.9 6.7 97 290-391 53-158 (239)
336 PRK04266 fibrillarin; Provisio 85.5 2.4 5.3E-05 40.5 6.8 96 284-389 70-174 (226)
337 PRK07402 precorrin-6B methylas 85.5 2.5 5.3E-05 39.1 6.7 138 256-407 9-159 (196)
338 TIGR02716 C20_methyl_CrtF C-20 85.1 0.9 1.9E-05 45.2 3.7 103 284-391 145-254 (306)
339 PRK01747 mnmC bifunctional tRN 84.9 4.9 0.00011 44.5 9.8 58 107-178 165-226 (662)
340 cd00315 Cyt_C5_DNA_methylase C 84.6 13 0.00029 36.4 11.7 123 47-177 2-141 (275)
341 PRK09489 rsmC 16S ribosomal RN 84.5 0.63 1.4E-05 47.4 2.4 97 291-390 199-302 (342)
342 PRK14967 putative methyltransf 84.2 1.5 3.3E-05 41.5 4.7 118 290-411 38-180 (223)
343 cd08283 FDH_like_1 Glutathione 84.2 4.1 9E-05 41.7 8.3 98 46-146 186-306 (386)
344 KOG3045 Predicted RNA methylas 83.9 0.7 1.5E-05 44.8 2.2 105 290-413 182-289 (325)
345 TIGR02469 CbiT precorrin-6Y C5 83.7 1.6 3.5E-05 36.3 4.3 90 290-390 21-121 (124)
346 PRK13942 protein-L-isoaspartat 83.2 1.3 2.9E-05 41.6 3.9 92 289-390 77-175 (212)
347 PRK11524 putative methyltransf 83.0 1.3 2.9E-05 43.7 3.9 81 93-187 10-107 (284)
348 PRK04457 spermidine synthase; 82.9 5.4 0.00012 38.9 8.1 100 287-389 65-175 (262)
349 PF01728 FtsJ: FtsJ-like methy 82.6 0.93 2E-05 41.3 2.5 142 284-434 19-180 (181)
350 PRK11805 N5-glutamine S-adenos 81.9 4 8.7E-05 40.8 6.9 115 290-409 135-282 (307)
351 TIGR00080 pimt protein-L-isoas 81.9 1.3 2.8E-05 41.7 3.2 86 290-389 79-175 (215)
352 KOG3010 Methyltransferase [Gen 81.8 2.3 4.9E-05 41.0 4.7 115 285-409 30-158 (261)
353 PF07757 AdoMet_MTase: Predict 80.9 1.4 3E-05 37.1 2.6 28 45-72 59-86 (112)
354 COG0286 HsdM Type I restrictio 80.9 16 0.00034 39.2 11.3 117 24-149 174-329 (489)
355 cd08254 hydroxyacyl_CoA_DH 6-h 80.4 5.7 0.00012 39.2 7.4 91 47-146 168-263 (338)
356 PF05148 Methyltransf_8: Hypot 79.6 0.89 1.9E-05 42.9 1.2 120 273-413 60-183 (219)
357 PRK14966 unknown domain/N5-glu 78.9 11 0.00024 39.4 9.1 137 291-435 254-419 (423)
358 PF13847 Methyltransf_31: Meth 78.7 2.9 6.2E-05 36.8 4.2 96 290-393 5-112 (152)
359 TIGR03704 PrmC_rel_meth putati 78.2 2.2 4.8E-05 41.4 3.6 121 290-412 88-237 (251)
360 KOG4058 Uncharacterized conser 78.1 3.7 8E-05 36.7 4.5 84 25-113 58-145 (199)
361 PF14740 DUF4471: Domain of un 77.9 4.5 9.8E-05 40.1 5.6 64 106-175 220-285 (289)
362 PF02005 TRM: N2,N2-dimethylgu 77.3 2.4 5.3E-05 43.7 3.7 136 7-148 11-156 (377)
363 PRK09424 pntA NAD(P) transhydr 76.8 9.8 0.00021 40.9 8.2 98 45-147 165-286 (509)
364 PRK00312 pcm protein-L-isoaspa 76.6 4.5 9.8E-05 37.8 5.1 88 288-390 78-174 (212)
365 KOG1562 Spermidine synthase [A 76.3 6.9 0.00015 38.9 6.3 105 43-149 120-239 (337)
366 COG4301 Uncharacterized conser 75.3 16 0.00035 35.5 8.3 102 45-146 79-193 (321)
367 TIGR02081 metW methionine bios 74.9 3.6 7.7E-05 37.9 3.8 87 291-383 16-104 (194)
368 TIGR03533 L3_gln_methyl protei 73.9 6.2 0.00013 39.0 5.5 115 290-409 123-268 (284)
369 KOG2361 Predicted methyltransf 73.7 1.8 3.8E-05 41.7 1.4 50 340-393 136-185 (264)
370 PRK09880 L-idonate 5-dehydroge 73.3 12 0.00026 37.6 7.5 90 46-147 171-267 (343)
371 COG1568 Predicted methyltransf 73.1 16 0.00035 36.0 7.8 165 46-227 154-330 (354)
372 KOG1501 Arginine N-methyltrans 72.9 9.3 0.0002 39.9 6.4 67 22-91 46-115 (636)
373 PRK14121 tRNA (guanine-N(7)-)- 71.9 10 0.00022 39.4 6.6 116 289-410 123-256 (390)
374 COG1565 Uncharacterized conser 71.1 10 0.00022 38.7 6.3 54 3-64 44-97 (370)
375 PF06080 DUF938: Protein of un 70.6 6.2 0.00013 37.1 4.3 133 291-434 28-204 (204)
376 PRK10742 putative methyltransf 69.4 16 0.00036 35.4 7.1 72 47-121 91-176 (250)
377 PF05175 MTS: Methyltransferas 69.4 3.9 8.6E-05 36.9 2.7 113 288-404 31-155 (170)
378 TIGR00006 S-adenosyl-methyltra 68.9 11 0.00024 37.7 6.0 31 47-77 23-57 (305)
379 TIGR00417 speE spermidine synt 68.8 4.9 0.00011 39.3 3.5 104 286-390 70-185 (270)
380 KOG2671 Putative RNA methylase 68.0 11 0.00024 38.3 5.6 68 47-114 211-290 (421)
381 TIGR02822 adh_fam_2 zinc-bindi 67.9 22 0.00049 35.5 8.1 92 38-146 162-254 (329)
382 TIGR00027 mthyl_TIGR00027 meth 67.5 97 0.0021 30.1 12.2 104 45-148 82-199 (260)
383 COG1867 TRM1 N2,N2-dimethylgua 66.6 12 0.00027 38.2 5.8 99 45-148 53-156 (380)
384 PF05219 DREV: DREV methyltran 66.5 7.1 0.00015 38.1 3.9 90 288-389 94-186 (265)
385 KOG4300 Predicted methyltransf 66.0 3.6 7.8E-05 38.8 1.7 39 349-391 144-182 (252)
386 PF11899 DUF3419: Protein of u 65.5 14 0.00031 38.1 6.2 73 73-146 258-334 (380)
387 KOG2539 Mitochondrial/chloropl 65.4 5.2 0.00011 42.0 2.9 104 44-148 200-317 (491)
388 KOG2730 Methylase [General fun 65.4 5.5 0.00012 37.9 2.8 50 47-101 97-154 (263)
389 cd05188 MDR Medium chain reduc 65.4 24 0.00053 33.0 7.5 87 46-147 136-233 (271)
390 PHA01634 hypothetical protein 65.3 20 0.00044 31.3 6.0 30 45-74 29-61 (156)
391 PRK14902 16S rRNA methyltransf 65.2 6.1 0.00013 41.6 3.5 99 290-390 252-378 (444)
392 PF04445 SAM_MT: Putative SAM- 64.5 12 0.00027 35.9 5.1 74 47-121 78-163 (234)
393 TIGR03438 probable methyltrans 64.2 9.6 0.00021 37.9 4.5 97 290-389 65-175 (301)
394 PF01555 N6_N4_Mtase: DNA meth 62.7 11 0.00024 34.8 4.4 54 123-187 33-87 (231)
395 PF01739 CheR: CheR methyltran 62.6 3.2 6.9E-05 38.8 0.7 56 336-394 123-178 (196)
396 cd08234 threonine_DH_like L-th 61.5 31 0.00068 33.9 7.7 86 46-146 161-257 (334)
397 PF13649 Methyltransf_25: Meth 61.3 0.88 1.9E-05 37.1 -2.9 92 292-385 1-101 (101)
398 cd08245 CAD Cinnamyl alcohol d 61.2 34 0.00073 33.7 7.9 92 46-146 164-256 (330)
399 PRK10611 chemotaxis methyltran 60.7 4.6 9.9E-05 40.1 1.5 45 348-394 221-265 (287)
400 PRK00811 spermidine synthase; 60.6 8.9 0.00019 37.8 3.5 104 284-390 72-190 (283)
401 PF00107 ADH_zinc_N: Zinc-bind 60.0 7.6 0.00017 32.7 2.6 83 54-148 1-91 (130)
402 TIGR00561 pntA NAD(P) transhyd 59.8 17 0.00037 39.1 5.7 92 45-144 164-282 (511)
403 PLN02781 Probable caffeoyl-CoA 59.8 20 0.00044 34.2 5.8 95 285-390 65-177 (234)
404 PF03514 GRAS: GRAS domain fam 59.3 58 0.0013 33.5 9.4 98 46-144 112-242 (374)
405 cd08230 glucose_DH Glucose deh 58.8 47 0.001 33.3 8.6 90 46-146 174-269 (355)
406 COG3510 CmcI Cephalosporin hyd 58.5 27 0.00059 32.7 6.0 101 44-149 69-183 (237)
407 TIGR01177 conserved hypothetic 58.4 18 0.00038 36.4 5.3 114 290-408 184-309 (329)
408 PF03848 TehB: Tellurite resis 57.7 8.6 0.00019 35.8 2.7 93 290-389 32-131 (192)
409 PF05430 Methyltransf_30: S-ad 56.8 19 0.00042 31.0 4.5 59 107-179 49-111 (124)
410 TIGR00563 rsmB ribosomal RNA s 56.5 21 0.00045 37.4 5.6 109 290-401 240-385 (426)
411 cd08232 idonate-5-DH L-idonate 56.3 37 0.0008 33.6 7.3 92 46-146 167-262 (339)
412 TIGR00536 hemK_fam HemK family 55.3 31 0.00067 33.9 6.4 136 290-435 116-283 (284)
413 TIGR03451 mycoS_dep_FDH mycoth 55.1 39 0.00084 34.0 7.2 92 46-147 178-277 (358)
414 PF00145 DNA_methylase: C-5 cy 53.9 59 0.0013 31.9 8.2 122 47-178 2-141 (335)
415 PF10294 Methyltransf_16: Puta 53.7 13 0.00028 33.7 3.2 109 286-401 43-172 (173)
416 PRK07580 Mg-protoporphyrin IX 53.4 46 0.00099 31.0 7.0 100 288-392 63-167 (230)
417 PF13051 DUF3912: Protein of u 53.2 3.1 6.8E-05 30.5 -0.8 10 334-343 57-66 (68)
418 cd08237 ribitol-5-phosphate_DH 53.0 44 0.00096 33.5 7.2 86 46-146 165-256 (341)
419 TIGR00853 pts-lac PTS system, 52.9 24 0.00052 28.8 4.3 54 47-116 5-58 (95)
420 COG4122 Predicted O-methyltran 52.8 16 0.00034 34.8 3.6 85 338-435 119-218 (219)
421 PF05711 TylF: Macrocin-O-meth 52.7 1.2E+02 0.0027 29.4 9.9 86 91-186 158-247 (248)
422 KOG0024 Sorbitol dehydrogenase 52.4 51 0.0011 33.3 7.2 93 46-146 171-273 (354)
423 TIGR02021 BchM-ChlM magnesium 52.0 29 0.00062 32.4 5.3 97 288-392 55-159 (219)
424 TIGR02825 B4_12hDH leukotriene 51.9 65 0.0014 31.7 8.2 96 38-146 135-237 (325)
425 KOG1098 Putative SAM-dependent 51.4 15 0.00034 39.9 3.6 32 46-77 46-82 (780)
426 TIGR00675 dcm DNA-methyltransf 51.1 97 0.0021 31.0 9.3 122 48-177 1-138 (315)
427 cd08255 2-desacetyl-2-hydroxye 50.7 57 0.0012 31.1 7.4 86 47-146 100-190 (277)
428 COG2230 Cfa Cyclopropane fatty 49.3 15 0.00033 36.3 3.1 102 276-390 64-175 (283)
429 TIGR03587 Pse_Me-ase pseudamin 48.6 28 0.00062 32.5 4.7 93 289-389 44-140 (204)
430 COG0604 Qor NADPH:quinone redu 48.5 37 0.00081 34.2 5.8 94 38-147 139-242 (326)
431 KOG1253 tRNA methyltransferase 48.1 14 0.00031 39.1 2.8 98 46-148 111-218 (525)
432 cd01842 SGNH_hydrolase_like_5 48.0 1E+02 0.0022 28.5 7.9 45 105-149 47-102 (183)
433 PF02390 Methyltransf_4: Putat 47.8 16 0.00034 34.0 2.8 118 289-410 18-155 (195)
434 PLN03154 putative allyl alcoho 47.6 72 0.0016 32.1 7.8 90 47-146 161-258 (348)
435 PF01596 Methyltransf_3: O-met 46.9 36 0.00079 32.0 5.1 135 284-435 41-205 (205)
436 cd08281 liver_ADH_like1 Zinc-d 46.3 50 0.0011 33.5 6.4 88 47-146 194-290 (371)
437 PRK09548 PTS system ascorbate- 45.4 40 0.00087 36.9 5.7 58 44-116 505-562 (602)
438 PF07927 YcfA: YcfA-like prote 44.7 45 0.00097 23.9 4.3 31 160-190 1-31 (56)
439 PF14881 Tubulin_3: Tubulin do 44.5 35 0.00076 31.4 4.5 33 288-320 76-117 (180)
440 COG0500 SmtA SAM-dependent met 44.1 61 0.0013 26.2 5.7 94 292-393 52-157 (257)
441 PTZ00357 methyltransferase; Pr 44.1 1.3E+02 0.0028 33.8 9.1 95 47-142 703-831 (1072)
442 PRK13255 thiopurine S-methyltr 43.7 13 0.00029 35.2 1.6 95 290-389 39-153 (218)
443 COG4123 Predicted O-methyltran 42.7 63 0.0014 31.4 6.1 47 367-413 146-192 (248)
444 PRK11524 putative methyltransf 42.6 36 0.00078 33.5 4.6 31 47-77 211-243 (284)
445 KOG2651 rRNA adenine N-6-methy 42.5 34 0.00074 35.3 4.3 31 43-73 152-185 (476)
446 KOG1393 Hydroxymethylglutaryl- 42.3 13 0.00027 38.2 1.2 69 271-339 97-194 (462)
447 cd08261 Zn_ADH7 Alcohol dehydr 42.2 1E+02 0.0022 30.4 7.9 97 38-146 156-258 (337)
448 PF01555 N6_N4_Mtase: DNA meth 41.4 38 0.00082 31.1 4.3 29 47-75 194-224 (231)
449 COG1255 Uncharacterized protei 41.3 81 0.0017 27.1 5.7 83 47-142 16-100 (129)
450 cd08239 THR_DH_like L-threonin 41.2 74 0.0016 31.5 6.7 88 47-146 166-262 (339)
451 PRK13699 putative methylase; P 41.1 47 0.001 31.6 5.0 31 47-77 166-198 (227)
452 PRK00536 speE spermidine synth 40.2 23 0.0005 34.7 2.7 37 348-393 137-173 (262)
453 cd05278 FDH_like Formaldehyde 39.9 89 0.0019 30.8 7.0 88 46-146 169-267 (347)
454 TIGR03366 HpnZ_proposed putati 39.6 80 0.0017 30.5 6.5 88 46-146 122-218 (280)
455 KOG1540 Ubiquinone biosynthesi 39.6 44 0.00096 32.7 4.4 111 290-404 102-228 (296)
456 PLN02586 probable cinnamyl alc 39.3 94 0.002 31.4 7.2 90 46-146 185-278 (360)
457 COG4976 Predicted methyltransf 39.2 15 0.00032 35.4 1.2 101 283-390 120-224 (287)
458 PLN02366 spermidine synthase 38.9 27 0.00058 35.1 3.0 103 285-390 88-205 (308)
459 cd05564 PTS_IIB_chitobiose_lic 38.8 78 0.0017 25.7 5.3 78 51-150 4-82 (96)
460 TIGR01202 bchC 2-desacetyl-2-h 38.6 75 0.0016 31.3 6.2 81 46-146 146-231 (308)
461 PF11599 AviRa: RRNA methyltra 37.8 50 0.0011 31.6 4.3 36 43-78 50-91 (246)
462 PF14740 DUF4471: Domain of un 37.1 25 0.00055 34.9 2.5 43 368-410 230-284 (289)
463 PLN02476 O-methyltransferase 36.6 76 0.0017 31.4 5.7 133 284-435 114-278 (278)
464 PRK09590 celB cellobiose phosp 36.5 67 0.0014 26.8 4.6 81 47-150 3-86 (104)
465 TIGR00446 nop2p NOL1/NOP2/sun 36.2 40 0.00088 32.7 3.7 98 290-390 73-198 (264)
466 TIGR03201 dearomat_had 6-hydro 36.0 1.1E+02 0.0023 30.7 6.9 93 46-147 168-273 (349)
467 PLN02740 Alcohol dehydrogenase 35.9 1E+02 0.0023 31.3 6.9 94 38-146 195-300 (381)
468 COG2242 CobL Precorrin-6B meth 35.9 1.9E+02 0.0041 26.9 7.8 137 256-411 3-157 (187)
469 cd05285 sorbitol_DH Sorbitol d 34.9 1.4E+02 0.0031 29.5 7.6 97 38-146 159-265 (343)
470 PRK10309 galactitol-1-phosphat 34.3 1.3E+02 0.0028 29.9 7.2 92 46-146 162-260 (347)
471 PLN02589 caffeoyl-CoA O-methyl 34.2 76 0.0017 30.7 5.2 37 347-390 153-189 (247)
472 cd08295 double_bond_reductase_ 33.5 1.6E+02 0.0034 29.2 7.7 96 38-146 148-251 (338)
473 PLN02827 Alcohol dehydrogenase 33.4 1.2E+02 0.0027 30.8 7.0 89 46-146 195-295 (378)
474 PF11899 DUF3419: Protein of u 33.0 20 0.00043 37.1 1.0 44 348-393 293-336 (380)
475 COG0270 Dcm Site-specific DNA 32.6 3.1E+02 0.0068 27.5 9.6 119 47-173 5-141 (328)
476 cd08236 sugar_DH NAD(P)-depend 32.6 1.4E+02 0.003 29.4 7.1 91 47-146 162-258 (343)
477 cd08294 leukotriene_B4_DH_like 32.5 1.5E+02 0.0032 28.9 7.2 89 47-146 146-241 (329)
478 COG0686 Ald Alanine dehydrogen 32.1 1.2E+02 0.0027 30.6 6.3 92 46-143 169-265 (371)
479 cd00401 AdoHcyase S-adenosyl-L 31.7 1E+02 0.0022 32.3 6.0 83 46-147 203-290 (413)
480 PRK01581 speE spermidine synth 31.1 93 0.002 32.1 5.5 124 285-410 147-292 (374)
481 PF11312 DUF3115: Protein of u 31.1 1.7E+02 0.0037 29.4 7.1 23 126-148 222-244 (315)
482 cd05565 PTS_IIB_lactose PTS_II 30.6 1.1E+02 0.0023 25.4 4.8 74 48-144 3-76 (99)
483 COG3414 SgaB Phosphotransferas 30.5 62 0.0013 26.5 3.3 55 47-116 3-57 (93)
484 cd08242 MDR_like Medium chain 29.7 1.9E+02 0.0042 28.1 7.5 84 47-145 158-244 (319)
485 PF02636 Methyltransf_28: Puta 29.5 42 0.00091 32.3 2.6 30 47-76 21-62 (252)
486 cd08285 NADP_ADH NADP(H)-depen 28.8 1.8E+02 0.0039 28.8 7.2 90 46-145 168-265 (351)
487 PRK10310 PTS system galactitol 28.7 52 0.0011 26.7 2.6 16 47-63 4-19 (94)
488 PRK13943 protein-L-isoaspartat 28.5 69 0.0015 32.3 4.0 88 290-391 82-180 (322)
489 KOG1227 Putative methyltransfe 28.2 34 0.00074 34.2 1.7 121 4-141 164-290 (351)
490 COG1063 Tdh Threonine dehydrog 28.2 1.8E+02 0.0039 29.4 7.1 90 47-148 171-271 (350)
491 PF06952 PsiA: PsiA protein; 27.8 15 0.00033 35.0 -0.8 46 327-382 173-218 (238)
492 KOG1975 mRNA cap methyltransfe 27.5 40 0.00086 34.1 2.0 63 348-412 195-259 (389)
493 TIGR02818 adh_III_F_hyde S-(hy 27.4 2E+02 0.0044 29.0 7.4 88 47-146 188-287 (368)
494 TIGR02819 fdhA_non_GSH formald 27.2 3.8E+02 0.0083 27.5 9.4 96 47-146 188-299 (393)
495 PF06962 rRNA_methylase: Putat 27.0 87 0.0019 27.7 3.9 52 379-434 80-140 (140)
496 cd08293 PTGR2 Prostaglandin re 26.8 2.5E+02 0.0054 27.6 7.8 89 46-145 156-253 (345)
497 cd08300 alcohol_DH_class_III c 26.4 2.4E+02 0.0051 28.4 7.6 89 46-146 188-288 (368)
498 cd08298 CAD2 Cinnamyl alcohol 26.4 2.8E+02 0.006 27.0 8.0 86 47-146 170-256 (329)
499 PF05430 Methyltransf_30: S-ad 26.1 1.2E+02 0.0026 26.1 4.6 76 349-435 49-124 (124)
500 PF02254 TrkA_N: TrkA-N domain 25.7 1.6E+02 0.0035 24.0 5.2 84 53-147 4-97 (116)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1.2e-133 Score=1017.19 Aligned_cols=425 Identities=54% Similarity=1.002 Sum_probs=405.2
Q ss_pred CcccCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHH
Q 013393 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHEN 80 (444)
Q Consensus 1 ~~~~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a 80 (444)
|+++|++|+||||||+|++|+.+|+++|+++++.. ..++.+|++||||||+|+|+.+|++++|+++++++.+.+++
T Consensus 78 v~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~----~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~ 153 (506)
T PF03141_consen 78 VRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLI----KWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA 153 (506)
T ss_pred eeecCCEEEeCCCCccccCCHHHHHHHHHHHhhcc----ccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence 57899999999999999999999999999999863 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCC-ChhhHHH
Q 013393 81 QIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-DPENRRI 159 (444)
Q Consensus 81 ~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~-~~~~~~~ 159 (444)
++|+|.++|.++.+.+....+||||+++||+|||+.|.+.|.++.+.+|-|++|+|||||+|+++.|+.+.+ .++..+.
T Consensus 154 qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~ 233 (506)
T PF03141_consen 154 QVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEE 233 (506)
T ss_pred hhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHH
Confidence 999999999999999999999999999999999999999999998999999999999999999999999944 4566779
Q ss_pred HHHHHHHHHhcCeEEEeeecceeEeeccCchhhHhhcCCCCCCCcccCCCCcchhhhhcccccccccccccccccCcccc
Q 013393 160 WNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLV 239 (444)
Q Consensus 160 ~~~l~~l~~~~gf~~v~~~~~~~~w~k~l~~~c~~~~~~~~~p~lc~~~~~~~~awy~~l~~ci~~~p~~~~~~~~~~~~ 239 (444)
|..++++++++||+.+.++++++|||||.+++||..++....|++|..+++++++||++|++|++++|+......++++.
T Consensus 234 ~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~ 313 (506)
T PF03141_consen 234 WNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLP 313 (506)
T ss_pred HHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCC
Confidence 99999999999999999999999999999999999999889999999889999999999999999999887777889999
Q ss_pred CCCCCCCCCCCCccc---cCCChhHHHhhHhhHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEe
Q 013393 240 PWPARLTAPPPRLEE---VGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNV 316 (444)
Q Consensus 240 ~wP~rL~~~p~~~~~---~g~~~~~f~~~~~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~ 316 (444)
+||+||+..|+|+.. .|.+.+.|.+|++.|+++|+.|++.+...+++++|||||||||+||||||||+++|||||||
T Consensus 314 ~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNV 393 (506)
T PF03141_consen 314 KWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNV 393 (506)
T ss_pred CChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEe
Confidence 999999999999998 89999999999999999999999988778999999999999999999999999999999999
Q ss_pred ccccCCCchhHHhhccccccccccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccHHHH
Q 013393 317 APVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSII 396 (444)
Q Consensus 317 ~~~~~~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~~~ 396 (444)
||++++|||++||||||||+||||||+|||||||||||||++||| .+++||+|+||||||||||||||++||||+.+++
T Consensus 394 VP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs-~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl 472 (506)
T PF03141_consen 394 VPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFS-LYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVL 472 (506)
T ss_pred cccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhh-hhcccccHHHHHHHhHhhcCCCceEEEeccHHHH
Confidence 999999999999999999999999999999999999999999999 6778899999999999999999999999999999
Q ss_pred HHHHHHHhhccceeEEeccccccCCCCCCCceEEEEEe
Q 013393 397 NYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKK 434 (444)
Q Consensus 397 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k 434 (444)
++|++|+++|||+++++ ++|+++. ++||||||||
T Consensus 473 ~~v~~i~~~lrW~~~~~--d~e~g~~--~~EkiL~~~K 506 (506)
T PF03141_consen 473 EKVKKIAKSLRWEVRIH--DTEDGPD--GPEKILICQK 506 (506)
T ss_pred HHHHHHHHhCcceEEEE--ecCCCCC--CCceEEEEEC
Confidence 99999999999999754 6677765 4899999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.83 E-value=7.5e-21 Score=194.45 Aligned_cols=150 Identities=22% Similarity=0.377 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhhhhc----cCCceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhccc---cccccccc
Q 013393 270 QVRVVDYWKQMKTVA----QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGL---IGTVHDWC 341 (444)
Q Consensus 270 ~~~v~~y~~~l~~~l----~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~rg~---~~~~~~~~ 341 (444)
+.-++.|...+.+.+ ..+.+|-++|+..|.|+|||.|.++.|-+|...|.+.+ ++..++.|||+ ||+.-+
T Consensus 95 ~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s-- 172 (506)
T PF03141_consen 95 PHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGS-- 172 (506)
T ss_pred cCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhcc--
Confidence 445556665555544 56899999999999999999999999999999999875 89999999996 444444
Q ss_pred cCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEe----------ccHHHHHHHHHHHhhccceeE
Q 013393 342 ESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR----------DKSSIINYIRKFITALKWDGW 411 (444)
Q Consensus 342 ~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r----------d~~~~~~~~~~~~~~~~w~~~ 411 (444)
..||.+.|+|||+|++++...+..+ -..+|+|+||||||||++|+. |..+..+++++++++|+|+.-
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~---~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~v 249 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPN---DGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKV 249 (506)
T ss_pred ccccCCccchhhhhcccccccchhc---ccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566667999999999999966554 357999999999999999983 456889999999999999974
Q ss_pred EeccccccCCCCCCCceEEEEEecc
Q 013393 412 LSEVEPRIDALSSSEERVLIAKKKL 436 (444)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~k~~ 436 (444)
.. +..+-|.||+.
T Consensus 250 a~------------~~~~aIwqKp~ 262 (506)
T PF03141_consen 250 AE------------KGDTAIWQKPT 262 (506)
T ss_pred ee------------eCCEEEEeccC
Confidence 32 34599999974
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.73 E-value=3.1e-17 Score=156.40 Aligned_cols=101 Identities=21% Similarity=0.351 Sum_probs=80.2
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
+.+|||||||||.++..+++. .|+++|+++.|+..+..+.......++.+.++|++.|||++++||+|.|++ .++
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f-glr 130 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF-GLR 130 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee-hhh
Confidence 348999999999999999884 466666655554444322222112238899999999999999999999999 588
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+.+|.+++|+|++|||||||++++.+
T Consensus 131 nv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 131 NVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred cCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 88999999999999999999988754
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.71 E-value=1.7e-17 Score=158.93 Aligned_cols=100 Identities=24% Similarity=0.406 Sum_probs=73.8
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||||.++..++++ .|+++|+++.++..+..+.......++.+.++|++.+|+++++||+|.|++ .++
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f-glr 127 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF-GLR 127 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES--GG
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh-hHH
Confidence 38999999999999998763 567777777666555544433334488999999999999999999999999 588
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
..+|..+.++|++|+|||||++++.+
T Consensus 128 n~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 128 NFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp G-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 78999999999999999999999754
No 5
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.68 E-value=6.5e-16 Score=163.08 Aligned_cols=305 Identities=16% Similarity=0.224 Sum_probs=164.7
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCc--cCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK--RLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~--~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..+++. .++|+|+++.++..+.. ......++.+...|.. .+++++++||+|+|+.+ ++|
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~-l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWL-LMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCCCEEEEehhhh-HHh
Confidence 38999999999999999874 57777776655533211 1111345677778864 46788889999999984 777
Q ss_pred ccc--HHHHHHHHHhhcCCCeEEEEEcCCCCCC-------ChhhHHHHHHHHHHHHhcCeEEEeeecc--eeEeeccCch
Q 013393 122 LQR--DGILLLELDRLLRPGGYFVYSSPEAYAH-------DPENRRIWNAMYDLLKSMCWKIVSKKDQ--TVIWAKPISN 190 (444)
Q Consensus 122 ~~d--~~~~L~ei~rvLkPGG~lvis~p~~~~~-------~~~~~~~~~~l~~l~~~~gf~~v~~~~~--~~~w~k~l~~ 190 (444)
..+ ...+++++.++|||||++++.+...... .+........+.+++.+.+|........ ...+.++...
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSFELSLVGCKCIGA 195 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEEEEEEEEeechhh
Confidence 665 4689999999999999999976443221 1222223346667788888765543321 1122222211
Q ss_pred hhHhhcCCCCCCCcccCCCCcchhhhhcccccccccccccccccCccccCCCCCCCCCCCCccccCCC-hhHH-HhhHhh
Q 013393 191 SCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVT-TEEF-HEDIGI 268 (444)
Q Consensus 191 ~c~~~~~~~~~p~lc~~~~~~~~awy~~l~~ci~~~p~~~~~~~~~~~~~wP~rL~~~p~~~~~~g~~-~~~f-~~~~~~ 268 (444)
|.+.+. ....++.........-...+..++.. +.-.++ |+. .+.| ..+..+
T Consensus 196 --~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~y~~~-----~i~~~~~f~g~~~~v 248 (475)
T PLN02336 196 --YVKNKK-NQNQICWLWQKVSSTNDKGFQRFLDN-------------------VQYKSS-----GILRYERVFGEGFVS 248 (475)
T ss_pred --hhhccC-CcceEEEEEEeecCCcchhHHHHhhh-------------------hccccc-----cHHHHHHHhCCCCCC
Confidence 111111 11111111000000000111111111 000000 000 0000 000000
Q ss_pred H--HHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhc--cc---ccc-ccc
Q 013393 269 W--QVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR--GL---IGT-VHD 339 (444)
Q Consensus 269 w--~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~r--g~---~~~-~~~ 339 (444)
- ..........+. ++ .-..|+|+.+|.|+++..|.+..- -+|+=++-. ..|.+.-.+ |+ +-. ..|
T Consensus 249 ~~~v~~te~l~~~~~--~~--~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d 322 (475)
T PLN02336 249 TGGLETTKEFVDKLD--LK--PGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRKCSVEFEVAD 322 (475)
T ss_pred CchHHHHHHHHHhcC--CC--CCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcC
Confidence 0 002233333333 32 335799999999999888875431 145544432 334333222 21 112 234
Q ss_pred cccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 340 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 340 ~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+.+ .+.-+.+||+|.+.+.+-++. +...++-|+-|.|+|||.++|.|
T Consensus 323 ~~~-~~~~~~~fD~I~s~~~l~h~~----d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 323 CTK-KTYPDNSFDVIYSRDTILHIQ----DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred ccc-CCCCCCCEEEEEECCcccccC----CHHHHHHHHHHHcCCCeEEEEEE
Confidence 433 222236899999998887443 36789999999999999999865
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.64 E-value=4.8e-15 Score=144.60 Aligned_cols=102 Identities=15% Similarity=0.191 Sum_probs=81.4
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHH---HcCCCcEEEEecCccCCCCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFAL---ERGIPSTLGVLGTKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~---e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~ 117 (444)
.+|||+|||+|.++..+++. .|+|+|+++.++..+..+... ....++.+...|.+.+|+++++||+|+|+.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~- 153 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY- 153 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec-
Confidence 38999999999999888763 578887777666554432211 112367888999999999999999999998
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.+|+.+++..+++|+.|+|||||++++.+..
T Consensus 154 ~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 154 GLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred ccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 5888899999999999999999999987543
No 7
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.61 E-value=9.7e-16 Score=124.36 Aligned_cols=93 Identities=29% Similarity=0.504 Sum_probs=73.4
Q ss_pred EEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccccccccHH
Q 013393 49 LDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 126 (444)
Q Consensus 49 LDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~ 126 (444)
||+|||+|..+..++++. +.++.+.|+++.+++.++++.. ...+...|...+|+++++||+|+|.. +++|.++..
T Consensus 1 LdiG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~-~~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG--GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNS-VLHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTT--TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEES-HGGGSSHHH
T ss_pred CEecCcCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccccc-ceeeccCHH
Confidence 899999999999998861 2244444666677777777643 34588999999999999999999998 577778999
Q ss_pred HHHHHHHhhcCCCeEEEE
Q 013393 127 ILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 127 ~~L~ei~rvLkPGG~lvi 144 (444)
.+++|+.|+|||||++++
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.61 E-value=5.2e-15 Score=144.57 Aligned_cols=160 Identities=16% Similarity=0.251 Sum_probs=108.1
Q ss_pred ccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc---CC
Q 013393 17 FHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER---GI 90 (444)
Q Consensus 17 f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~---~~ 90 (444)
++.|-....+.+.+.+.+ +++. +|||||||+|..+..+++. .|+++|+++ .+++.|+++ ..
T Consensus 33 ~~~gg~~~~~~~l~~l~l-----~~~~---~VLDiGcG~G~~a~~la~~~~~~v~giD~s~-----~~~~~a~~~~~~~~ 99 (263)
T PTZ00098 33 ISSGGIEATTKILSDIEL-----NENS---KVLDIGSGLGGGCKYINEKYGAHVHGVDICE-----KMVNIAKLRNSDKN 99 (263)
T ss_pred CCCCchHHHHHHHHhCCC-----CCCC---EEEEEcCCCChhhHHHHhhcCCEEEEEECCH-----HHHHHHHHHcCcCC
Confidence 333333334555555543 3333 8999999999999888763 456665554 454555544 23
Q ss_pred CcEEEEecCccCCCCCCCccEEEecccccccc-ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC--hhhHH---------
Q 013393 91 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL-QRDGILLLELDRLLRPGGYFVYSSPEAYAHD--PENRR--------- 158 (444)
Q Consensus 91 ~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~-~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~--~~~~~--------- 158 (444)
++.+...|....|+++++||+|++..+.+|.. .+...++++++++|||||+|+++++...... .....
T Consensus 100 ~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~ 179 (263)
T PTZ00098 100 KIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYT 179 (263)
T ss_pred ceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCC
Confidence 57788888888899999999999987544442 3778999999999999999999875322110 11110
Q ss_pred --HHHHHHHHHHhcCeEEEeeecceeEeeccCc
Q 013393 159 --IWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 189 (444)
Q Consensus 159 --~~~~l~~l~~~~gf~~v~~~~~~~~w~k~l~ 189 (444)
.-.++.++++++||+.+...+....|.....
T Consensus 180 ~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~~~ 212 (263)
T PTZ00098 180 LIPIQEYGDLIKSCNFQNVVAKDISDYWLELLQ 212 (263)
T ss_pred CCCHHHHHHHHHHCCCCeeeEEeCcHHHHHHHH
Confidence 1137788999999998887776666655443
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.60 E-value=1.1e-14 Score=147.50 Aligned_cols=133 Identities=19% Similarity=0.366 Sum_probs=97.2
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
..+|||||||+|.++..++++ .|+|+|+++.++..+.. .+.+.+ .++.+.+.|...+|+++++||+|+|..+ +
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~-~ 196 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES-G 196 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc-h
Confidence 348999999999999999874 67788777766544432 233333 3578889999999999999999999884 7
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCCCCC-------CChhhHH---------------HHHHHHHHHHhcCeEEEee
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-------HDPENRR---------------IWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~-------~~~~~~~---------------~~~~l~~l~~~~gf~~v~~ 177 (444)
+|.++...+++++.|+|||||+|++++..... ..+.... .-.++.+++++.||..+..
T Consensus 197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~ 276 (340)
T PLN02244 197 EHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKT 276 (340)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEe
Confidence 77789999999999999999999997643210 0001000 1236777888888877765
Q ss_pred ec
Q 013393 178 KD 179 (444)
Q Consensus 178 ~~ 179 (444)
.+
T Consensus 277 ~d 278 (340)
T PLN02244 277 ED 278 (340)
T ss_pred ee
Confidence 43
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.57 E-value=5.4e-15 Score=132.06 Aligned_cols=121 Identities=29% Similarity=0.540 Sum_probs=88.7
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||+|||+|.++..+.+. .++++|+++.++ +. ........+....+.++++||+|+|+. +++|++
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~-~l~~~~ 92 (161)
T PF13489_consen 24 KRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMI-----EK-----RNVVFDNFDAQDPPFPDGSFDLIICND-VLEHLP 92 (161)
T ss_dssp SEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHH-----HH-----TTSEEEEEECHTHHCHSSSEEEEEEES-SGGGSS
T ss_pred CEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHH-----hh-----hhhhhhhhhhhhhhccccchhhHhhHH-HHhhcc
Confidence 48999999999999999876 566666665443 32 333444444444556788999999998 699999
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcCCCCC----------C-Chh--hH--HHHHHHHHHHHhcCeEEEee
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSPEAYA----------H-DPE--NR--RIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p~~~~----------~-~~~--~~--~~~~~l~~l~~~~gf~~v~~ 177 (444)
++..+|+++.++|||||+++++++.... . ... .. -.-.++..++++.||+++++
T Consensus 93 d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~~ 161 (161)
T PF13489_consen 93 DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVEE 161 (161)
T ss_dssp HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE-
T ss_pred cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEEC
Confidence 9999999999999999999999876421 0 000 00 01248899999999988753
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.57 E-value=7.2e-14 Score=133.36 Aligned_cols=102 Identities=21% Similarity=0.280 Sum_probs=80.6
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++. .++|+|+++.++..+..+.+.....++.+...|...+++++++||+|+++. .++
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l~ 125 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF-GLR 125 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec-ccc
Confidence 38999999999999988763 578888777665444433332223356788888888888889999999988 578
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+.++...+++++.++|+|||++++.++.
T Consensus 126 ~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 126 NVPDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred cCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 8899999999999999999999987643
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.54 E-value=2.1e-14 Score=143.69 Aligned_cols=133 Identities=14% Similarity=0.159 Sum_probs=98.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||||||+|.++..+++. .|+|+|+++.++..++.. +...+ .++.+...+++.+++++++||+|+|.. +++|
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~-vLeH 210 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE-VIEH 210 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhh-HHHh
Confidence 48999999999999999874 567776666555444322 11112 257788888888888888999999998 6888
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCC---------------ChhhHH------HHHHHHHHHHhcCeEEEeeecc
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAH---------------DPENRR------IWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~---------------~~~~~~------~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
+.++..+++++.++|||||.+++++++.... .+.... .-.++..++++.||+++...+.
T Consensus 211 v~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 211 VANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGF 290 (322)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence 9999999999999999999999987653210 001111 1248899999999998877554
No 13
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=1.1e-14 Score=141.46 Aligned_cols=212 Identities=14% Similarity=0.248 Sum_probs=143.4
Q ss_pred ecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHH
Q 013393 9 NFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFA 85 (444)
Q Consensus 9 ~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a 85 (444)
.|++...........-++.+.+.+. |+||. +|||||||.|.++.+++++ +|+|+++|+.+...++.. +
T Consensus 45 yf~~~~~tL~eAQ~~k~~~~~~kl~-----L~~G~---~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r-~ 115 (283)
T COG2230 45 YFEDPDMTLEEAQRAKLDLILEKLG-----LKPGM---TLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKR-I 115 (283)
T ss_pred EeCCCCCChHHHHHHHHHHHHHhcC-----CCCCC---EEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHH-H
Confidence 4555555555555555666666664 56666 9999999999999999985 566776666555444422 2
Q ss_pred HHcCC--CcEEEEecCccCCCCCCCccEEEeccccccccc--cHHHHHHHHHhhcCCCeEEEEEcCCCCC----CChhhH
Q 013393 86 LERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYA----HDPENR 157 (444)
Q Consensus 86 ~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~--d~~~~L~ei~rvLkPGG~lvis~p~~~~----~~~~~~ 157 (444)
++.|. ++.+...|...+. +.||-|++.. .++|.. +.+.+|+.++++|+|||.+++.+..... ......
T Consensus 116 ~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg-mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i 191 (283)
T COG2230 116 AARGLEDNVEVRLQDYRDFE---EPFDRIVSVG-MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFI 191 (283)
T ss_pred HHcCCCcccEEEeccccccc---cccceeeehh-hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHH
Confidence 33344 4667777766654 4499999998 577754 4889999999999999999986533221 111111
Q ss_pred --HHH--------HHHHHHHHhcCeEEEeeecceeEeeccCchhhHhhcCCCCCCCcccCCCCcchhhhhcccccccccc
Q 013393 158 --RIW--------NAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYS 227 (444)
Q Consensus 158 --~~~--------~~l~~l~~~~gf~~v~~~~~~~~w~k~l~~~c~~~~~~~~~p~lc~~~~~~~~awy~~l~~ci~~~p 227 (444)
.+| ..+.....+.||.+...+.....|.+++..++..+....... .-..++....-|-..+.+|...++
T Consensus 192 ~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~~a-~~~~~e~~~r~w~~yl~~~~~~Fr 270 (283)
T COG2230 192 DKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEANRDEA-IALYDERFYRMWELYLAACAAAFR 270 (283)
T ss_pred HHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhc
Confidence 122 366777899999999999988899999888877655432111 111223445668999999999988
Q ss_pred ccccccc
Q 013393 228 AKMHHEK 234 (444)
Q Consensus 228 ~~~~~~~ 234 (444)
.+..+..
T Consensus 271 ~~~~~~~ 277 (283)
T COG2230 271 AGYIDVF 277 (283)
T ss_pred cCCceEE
Confidence 6654443
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=9.6e-14 Score=134.85 Aligned_cols=94 Identities=22% Similarity=0.398 Sum_probs=76.4
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||||||+|.++..+++. .|+|+|++ +.+++.|+++ ++.+...|.+.++ ++++||+|+|+. ++||
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s-----~~~~~~a~~~--~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~ 101 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRWPGAVIEALDSS-----PEMVAAARER--GVDARTGDVRDWK-PKPDTDVVVSNA-ALQW 101 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHhc--CCcEEEcChhhCC-CCCCceEEEEeh-hhhh
Confidence 48999999999999999864 46666665 4555666554 4667788887775 567999999998 5889
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+++...++++++++|||||+++++.+.
T Consensus 102 ~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 102 VPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 999999999999999999999997654
No 15
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.51 E-value=1.9e-14 Score=135.59 Aligned_cols=101 Identities=21% Similarity=0.384 Sum_probs=83.4
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||||||-|.++..|++. .|+|+|++...+..++ ..|.+.+..+.+.....+++....++||+|+|.. +++|.+
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmE-VlEHv~ 138 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCME-VLEHVP 138 (243)
T ss_pred CeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhh-HHHccC
Confidence 38999999999999999985 5677766665554444 3445557777777777777776668999999999 689999
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
|++.+++++.+.+||||.+++|+++
T Consensus 139 dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 139 DPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred CHHHHHHHHHHHcCCCcEEEEeccc
Confidence 9999999999999999999999887
No 16
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.50 E-value=2.4e-14 Score=140.29 Aligned_cols=201 Identities=16% Similarity=0.304 Sum_probs=116.7
Q ss_pred CCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHc--
Q 013393 11 PGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-- 88 (444)
Q Consensus 11 pg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~-- 88 (444)
+...+.......+-++.+.+.+ .+++|. +|||||||.|.++.+++++. ++.+.++.+|+.|.+.++++
T Consensus 37 ~~~~~~Le~AQ~~k~~~~~~~~-----~l~~G~---~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~ 106 (273)
T PF02353_consen 37 DEGDDTLEEAQERKLDLLCEKL-----GLKPGD---RVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIR 106 (273)
T ss_dssp SSTT--HHHHHHHHHHHHHTTT-----T--TT----EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHh-----CCCCCC---EEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHH
Confidence 3434444444444444444444 456666 99999999999999999861 23334444555555555443
Q ss_pred --CC--CcEEEEecCccCCCCCCCccEEEecccccccc--ccHHHHHHHHHhhcCCCeEEEEEcCCCC-------CCC--
Q 013393 89 --GI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL--QRDGILLLELDRLLRPGGYFVYSSPEAY-------AHD-- 153 (444)
Q Consensus 89 --~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~--~d~~~~L~ei~rvLkPGG~lvis~p~~~-------~~~-- 153 (444)
+. .+.+...|..+++. +||.|+|..+ ++|. ++...+|+++.++|||||.+++...... ...
T Consensus 107 ~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~-~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~ 182 (273)
T PF02353_consen 107 EAGLEDRVEVRLQDYRDLPG---KFDRIVSIEM-FEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSS 182 (273)
T ss_dssp CSTSSSTEEEEES-GGG------S-SEEEEESE-GGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCC
T ss_pred hcCCCCceEEEEeeccccCC---CCCEEEEEec-hhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCc
Confidence 43 46777888777653 8999999984 7765 5778999999999999999997542211 000
Q ss_pred h-hhHHHH--------HHHHHHHHhcCeEEEeeecceeEeeccCchhhHhhcCCCCCCCcccC-CCCcchhhhhcccccc
Q 013393 154 P-ENRRIW--------NAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSS-DDDPDVTWNVLMKACI 223 (444)
Q Consensus 154 ~-~~~~~~--------~~l~~l~~~~gf~~v~~~~~~~~w~k~l~~~c~~~~~~~~~p~lc~~-~~~~~~awy~~l~~ci 223 (444)
. ....+| .++...+++.||++....+....|.+++..+-..+..+. ..+... ++.....|-..|..|.
T Consensus 183 ~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~--~~i~~~~~~~f~r~w~~yl~~~~ 260 (273)
T PF02353_consen 183 DFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVENLGRHYARTLRAWRENFDANR--EEIIALFDEEFYRMWRYYLAYCA 260 (273)
T ss_dssp HHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTH--HHHHHHSHHHHHHHHHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHHHHHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHH
Confidence 0 011122 366677889999999999888888888877655544321 111111 2233445666666665
Q ss_pred cccc
Q 013393 224 SPYS 227 (444)
Q Consensus 224 ~~~p 227 (444)
-.+.
T Consensus 261 ~~F~ 264 (273)
T PF02353_consen 261 AGFR 264 (273)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 17
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.50 E-value=2e-13 Score=132.64 Aligned_cols=147 Identities=20% Similarity=0.242 Sum_probs=101.1
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCc
Q 013393 25 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTK 100 (444)
Q Consensus 25 ~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~ 100 (444)
.+.+.+++... + ....+|||+|||+|.++..+++. .|+++|+++.++..++. .+.+.+ .++.+...+..
T Consensus 31 ~~~~~~~l~~l----~--~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~ 103 (255)
T PRK11036 31 WQDLDRLLAEL----P--PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQ 103 (255)
T ss_pred HHHHHHHHHhc----C--CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHH
Confidence 44555555432 1 22348999999999999999885 56777777665544442 222233 34677777877
Q ss_pred cCC-CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCC-------------------------Ch
Q 013393 101 RLP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-------------------------DP 154 (444)
Q Consensus 101 ~lp-~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~-------------------------~~ 154 (444)
.++ +++++||+|+|.. +++|..++..++.++.++|||||++++...+.... .+
T Consensus 104 ~l~~~~~~~fD~V~~~~-vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 182 (255)
T PRK11036 104 DIAQHLETPVDLILFHA-VLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSP 182 (255)
T ss_pred HHhhhcCCCCCEEEehh-HHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCC
Confidence 664 5678999999998 58888999999999999999999998764332100 00
Q ss_pred hhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 155 ENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 155 ~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
...-.-.++.+++++.||+++...+
T Consensus 183 ~~~~~~~~l~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 183 DYPLDPEQVYQWLEEAGWQIMGKTG 207 (255)
T ss_pred CCCCCHHHHHHHHHHCCCeEeeeee
Confidence 0001124778889999999887665
No 18
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.50 E-value=1.4e-13 Score=133.24 Aligned_cols=99 Identities=24% Similarity=0.438 Sum_probs=82.1
Q ss_pred CCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
..+|||+|||+|.++..+++. .++++|+ ++.+++.++++.....+...|.+.+|+++++||+|+|+. .++|.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~-----s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~~ 116 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTALDL-----SPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL-AVQWC 116 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEEEEC-----CHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc-hhhhc
Confidence 458999999999999988764 4555555 456667777765556778889999999989999999988 58999
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
.+...++.++.++|||||.++++++..
T Consensus 117 ~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 117 GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999999999999999999999987653
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.50 E-value=3.5e-13 Score=135.36 Aligned_cols=132 Identities=22% Similarity=0.209 Sum_probs=95.6
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHH-HcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~-e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
++|||||||+|.++..+++. .|+|+|.++.++.+....... ....++.+...+++.+|+ +++||+|+|.. +++|
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~-vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMG-VLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECC-hhhc
Confidence 48999999999999999874 488888887665433211111 113467888888889988 68899999988 5788
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCC-----CChhh-H---------HHHHHHHHHHHhcCeEEEeeec
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYA-----HDPEN-R---------RIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~-----~~~~~-~---------~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
..++..+|++++++|+|||.+++.+..... ..+.. . ..-..+.++++++||+.+....
T Consensus 202 ~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 202 RRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 899999999999999999999986421110 00110 0 0124788899999998876644
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.49 E-value=3.2e-13 Score=142.64 Aligned_cols=140 Identities=24% Similarity=0.334 Sum_probs=98.8
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||||||+|..+..+++. .++|+|+++.++..+..+ +.....++.+...|....++++++||+|+|.. +++|.
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~-~l~h~ 345 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD-TILHI 345 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCCEEEEEECC-ccccc
Confidence 48999999999998888863 567777665544333321 11223457788889888888888999999988 47777
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC--hhhHH----------HHHHHHHHHHhcCeEEEeeecceeEeecc
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEAYAHD--PENRR----------IWNAMYDLLKSMCWKIVSKKDQTVIWAKP 187 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~--~~~~~----------~~~~l~~l~~~~gf~~v~~~~~~~~w~k~ 187 (444)
++...++++++|+|||||+++++++...... ..... .-..+.++++++||+++.....+..|...
T Consensus 346 ~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~~~~~~~~ 422 (475)
T PLN02336 346 QDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDRTDQFLQV 422 (475)
T ss_pred CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecchHHHHHH
Confidence 9999999999999999999999865422111 11100 12366788999999888666544444333
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=4.9e-13 Score=125.11 Aligned_cols=136 Identities=17% Similarity=0.295 Sum_probs=90.0
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||+|||+|.++.+|+++ .|+++|+++.++..++...+ ..+. ++.+.+.|...++++ ++||+|+|+.+ +||.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~-~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~~~ 108 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKA-AENLDNLHTAVVDLNNLTFD-GEYDFILSTVV-LMFL 108 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-HcCCCcceEEecChhhCCcC-CCcCEEEEecc-hhhC
Confidence 37999999999999999985 57888887766655543333 3333 467777887777764 67999999984 6665
Q ss_pred c--cHHHHHHHHHhhcCCCeEEEEEc-CCC--CC--CChhhHHHHHHHHHHHHhcCeEEEeeecceeEeec
Q 013393 123 Q--RDGILLLELDRLLRPGGYFVYSS-PEA--YA--HDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAK 186 (444)
Q Consensus 123 ~--d~~~~L~ei~rvLkPGG~lvis~-p~~--~~--~~~~~~~~~~~l~~l~~~~gf~~v~~~~~~~~w~k 186 (444)
. +...+++++.++|||||++++.. ... .. ..+...-.-.++.+.++ ||+++........+.+
T Consensus 109 ~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~~~~ 177 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGELHR 177 (197)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHhhcc
Confidence 4 45689999999999999965432 111 10 00110011135566665 8988776554444444
No 22
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.45 E-value=9.6e-13 Score=128.94 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=93.7
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|..+..+++. .|+++|+++.++..+....+ ..+ .++.+...|.+.+++++++||+|+++. ++
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~-~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~-v~ 156 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR-KAGYTNVEFRLGEIEALPVADNSVDVIISNC-VI 156 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHH-HcCCCCEEEEEcchhhCCCCCCceeEEEEcC-cc
Confidence 49999999999877665542 47788777665544443222 223 367788888888998888999999876 68
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhh----H----------HHHHHHHHHHHhcCeEEEeee
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN----R----------RIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~----~----------~~~~~l~~l~~~~gf~~v~~~ 178 (444)
++.++...+++++.++|||||+|++++.......+.. . ....++.+++++.||..+...
T Consensus 157 ~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 157 NLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ 229 (272)
T ss_pred cCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence 8888999999999999999999999754321111111 0 123467888899999876543
No 23
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.44 E-value=3.9e-13 Score=126.90 Aligned_cols=106 Identities=24% Similarity=0.304 Sum_probs=84.4
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh----------CCceEEEcCcccchHHHHHHHHHcCC----CcEEEEecCccCC
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS----------HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLP 103 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~----------~~V~gvdis~~dis~a~i~~a~e~~~----~~~~~~~d~~~lp 103 (444)
.|.|+.. .++||++||||..+..+++ .+|+.+|++|.++..+.. .+.+++. .+.+...|+++||
T Consensus 95 ~L~p~~~-m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq-Ra~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 95 KLGPGKG-MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ-RAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred ccCCCCC-CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH-HHhhcCCCcCCceEEEeCCcccCC
Confidence 3445443 5799999999998887765 268888888887766553 3333433 3677888999999
Q ss_pred CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 104 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 104 ~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
|++.+||....++ .+....+.++.++|++|+|||||+|.+-.
T Consensus 173 Fdd~s~D~yTiaf-GIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 173 FDDDSFDAYTIAF-GIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCCCcceeEEEec-ceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999999998 47777999999999999999999999744
No 24
>PRK08317 hypothetical protein; Provisional
Probab=99.43 E-value=2.6e-12 Score=122.10 Aligned_cols=117 Identities=24% Similarity=0.359 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEE
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGV 96 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~ 96 (444)
..|.+.+.+.+.+ .+ ..+|||+|||+|.++..+++. .++++|+++..+..+..+ ......++.+..
T Consensus 5 ~~~~~~~~~~~~~-----~~---~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~ 75 (241)
T PRK08317 5 RRYRARTFELLAV-----QP---GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVR 75 (241)
T ss_pred HHHHHHHHHHcCC-----CC---CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEe
Confidence 3444455555543 22 348999999999999988763 467776665444333221 111245677888
Q ss_pred ecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 97 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 97 ~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.|...+++++++||+|++.. ++++..+...+++++.++|||||++++..+.
T Consensus 76 ~d~~~~~~~~~~~D~v~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 76 GDADGLPFPDGSFDAVRSDR-VLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred cccccCCCCCCCceEEEEec-hhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 88888888888999999998 4777899999999999999999999998754
No 25
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.43 E-value=8.3e-13 Score=132.82 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=96.5
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||||||+|.++..+++. .++++|+++.+ ++.|+++ ..++.+...|.+.+++++++||+|+++. .+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~m-----L~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~-~L 188 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ-----LAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAG-SI 188 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHH-----HHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcC-hh
Confidence 48999999999998888763 46666665544 4444443 2356778888888999889999999987 57
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCCCCC--CChhhH------HHHHHHHHHHHhcCeEEEeeecceeEe
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--HDPENR------RIWNAMYDLLKSMCWKIVSKKDQTVIW 184 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~--~~~~~~------~~~~~l~~l~~~~gf~~v~~~~~~~~w 184 (444)
++.++...+++++.++|||||.+++..+.... ...... ...+++.+++++.||+.+........|
T Consensus 189 ~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 189 EYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 77789999999999999999999886543110 000000 123578899999999988766544444
No 26
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.43 E-value=2.5e-12 Score=128.30 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=91.7
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHH---cCCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE---RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e---~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
++|||||||+|.++..++.. .|+|+|.++.++.+.. .++. ....+.+...+.+.+|.. .+||+|+|+. ++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~--~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g-vL 198 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFE--AVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMG-VL 198 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHH--HHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcc-hh
Confidence 48999999999998888764 4778887776554321 1221 123566677788888764 5899999998 57
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCCCCCC-----Chhh-HH---------HHHHHHHHHHhcCeEEEeeec
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-----DPEN-RR---------IWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~-----~~~~-~~---------~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+|..++..+|++++++|||||.|++.+...... .+.. .. .-.++...++++||+.+....
T Consensus 199 ~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 199 YHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILD 273 (314)
T ss_pred hccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEe
Confidence 777999999999999999999999864321100 0111 00 124778899999999886543
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.42 E-value=2.4e-12 Score=120.23 Aligned_cols=137 Identities=15% Similarity=0.254 Sum_probs=90.9
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc-
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL- 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~- 122 (444)
.+|||+|||+|.++.+++++ .|+++|+++.++..+.. .+...+.++.+...|....+++ ++||+|+|+.+ +++.
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~~~~ 108 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDFIFSTVV-FMFLQ 108 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCEEEEecc-cccCC
Confidence 37999999999999999885 57888887766655443 3344466667777776666654 57999999884 6664
Q ss_pred -ccHHHHHHHHHhhcCCCeEEEEEcC-C--CCCC--ChhhHHHHHHHHHHHHhcCeEEEeeecceeEeecc
Q 013393 123 -QRDGILLLELDRLLRPGGYFVYSSP-E--AYAH--DPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 187 (444)
Q Consensus 123 -~d~~~~L~ei~rvLkPGG~lvis~p-~--~~~~--~~~~~~~~~~l~~l~~~~gf~~v~~~~~~~~w~k~ 187 (444)
.+...+++++.++|||||++++... . .+.. .....-.-.++.++++ +|+++........|.+.
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~ 177 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHAT 177 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeeccccccccc
Confidence 3456899999999999999665421 1 1110 0111122346666665 58887776555455443
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.42 E-value=8.7e-13 Score=125.29 Aligned_cols=135 Identities=19% Similarity=0.237 Sum_probs=93.5
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
+|||||||+|.++..+++. .++|+|+++.++..+.... .+.+ .++.+...|....|++ ++||+|++.. +++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~-~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~-~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI-RALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFE-VIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEecccccCCCC-CCCCEeehHH-HHH
Confidence 7999999999999988763 4667776655443333222 2222 3457777887666665 5899999988 577
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhh-------HHHHHHHHHHHHhcCeEEEeeecceeEe
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN-------RRIWNAMYDLLKSMCWKIVSKKDQTVIW 184 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~-------~~~~~~l~~l~~~~gf~~v~~~~~~~~w 184 (444)
+..+...+|+++.++|||||+++++++......... ...-.++.+++++.||+++........|
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~ 149 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEI 149 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhH
Confidence 788999999999999999999999865321110000 0112467788899999988776544433
No 29
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.42 E-value=6.6e-13 Score=118.73 Aligned_cols=100 Identities=23% Similarity=0.426 Sum_probs=80.0
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCC--CCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp--~~~~sFDlI~~~~~ 117 (444)
.+|||+|||+|.++..+++ ..++|+|+++.++..+... +++.+. ++.+.+.|..+++ ++ +.||+|++..
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~-~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~- 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKR-AKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG- 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHH-HHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES-
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcc-cccccccccceEEeehhccccccC-CCeeEEEEcC-
Confidence 4899999999999999993 3578888777666555532 233333 6899999988887 66 7899999987
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++++..+...+++++.++|++||.+++..+.
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 5788889999999999999999999997665
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=1.9e-12 Score=125.31 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=75.6
Q ss_pred CeEEEECCCcchHHHHHhh------CCceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~------~~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.+|||||||+|..+..+++ ..++++|+++.++..++.+..... ..++.+...|...+|++ .||+|+|+. .
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~-~ 134 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF-T 134 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh-H
Confidence 3899999999999887765 257788777776655554443322 22578888888887765 499999988 4
Q ss_pred ccccccH--HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 119 IDWLQRD--GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 119 l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+|++++. ..++++++++|||||.|++++..
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 7776543 58999999999999999998744
No 31
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.41 E-value=1.1e-12 Score=127.33 Aligned_cols=97 Identities=23% Similarity=0.375 Sum_probs=79.0
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
..+|||||||+|.++..+++. .++|+|++ +.+++.|+++..++.+...|...++ ++++||+|+|+. .+|
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s-----~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~ 104 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSS-----PAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANA-SLQ 104 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEcc-Chh
Confidence 348999999999999998863 46666555 4566677776667888888877665 456899999998 588
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
|..+...+++++.++|||||.++++.+.
T Consensus 105 ~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 105 WLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 9999999999999999999999998654
No 32
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.40 E-value=8.4e-13 Score=111.18 Aligned_cols=100 Identities=24% Similarity=0.353 Sum_probs=75.6
Q ss_pred CeEEEECCCcchHHHHHhh--C--CceEEEcCcccchHHHHHHHHH-cCCCcEEEEecC-ccCCCCCCCccEEEecc-cc
Q 013393 46 RNVLDVGCGVASFGAYLLS--H--DIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGT-KRLPYPSRSFELAHCSR-CR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~--~--~V~gvdis~~dis~a~i~~a~e-~~~~~~~~~~d~-~~lp~~~~sFDlI~~~~-~~ 118 (444)
.+|||+|||+|.++.++++ . .++++|+++.++..++.+.... ...++.+...|. ..... .+.||+|++.. +.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFTL 81 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCcc
Confidence 3899999999999999988 3 6888888887776666544232 256788888888 33444 35699999988 32
Q ss_pred cccc--ccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 119 IDWL--QRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 119 l~~~--~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.++. ++..++++++.+.|+|||++++++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2222 456789999999999999999964
No 33
>PRK05785 hypothetical protein; Provisional
Probab=99.37 E-value=1.8e-12 Score=123.94 Aligned_cols=86 Identities=21% Similarity=0.273 Sum_probs=70.1
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||||||||.++..+++. .|+|+| +++.|++.|+++. .+.+.|.+.+|+++++||+|+|+. .+++.
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~~v~gvD-----~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~-~l~~~ 123 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKYYVVALD-----YAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSF-ALHAS 123 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCCEEEEEC-----CCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecC-hhhcc
Confidence 48999999999999998875 455555 5555666666542 346788899999999999999999 57888
Q ss_pred ccHHHHHHHHHhhcCCCe
Q 013393 123 QRDGILLLELDRLLRPGG 140 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG 140 (444)
+|.+.+++|+.|+|||.+
T Consensus 124 ~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCHHHHHHHHHHHhcCce
Confidence 999999999999999953
No 34
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.36 E-value=8.9e-12 Score=115.60 Aligned_cols=116 Identities=20% Similarity=0.167 Sum_probs=87.9
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|..+..++. ..|+++|.++.++..++.. +++.+. ++.+...|..+++. +++||+|+|+.
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~-~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~---- 120 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREV-AAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA---- 120 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHH-HHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc----
Confidence 4899999999999888875 3688888887766555533 333343 47888888877776 67999999864
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
..+...++++++++|||||++++..... .-..+.++++..||.+...
T Consensus 121 -~~~~~~~l~~~~~~LkpGG~lv~~~~~~---------~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 121 -VASLSDLVELCLPLLKPGGRFLALKGRD---------PEEEIAELPKALGGKVEEV 167 (187)
T ss_pred -ccCHHHHHHHHHHhcCCCeEEEEEeCCC---------hHHHHHHHHHhcCceEeee
Confidence 2466789999999999999999975442 2346788888889976544
No 35
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.35 E-value=1.7e-12 Score=133.25 Aligned_cols=178 Identities=16% Similarity=0.249 Sum_probs=117.7
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCccCCCCCCCccEEEecccccccc--
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL-- 122 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~-- 122 (444)
+|||||||+|.++..+++.. +..+.+.|+++.+++.|+++ +.++.+...|...+ +++||.|++.. .++|.
T Consensus 170 rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~-~~ehvg~ 243 (383)
T PRK11705 170 RVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVG-MFEHVGP 243 (383)
T ss_pred EEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeC-chhhCCh
Confidence 89999999999999998741 22333444455566666554 34456666666554 47899999987 46665
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC---hhh----------HHHHHHHHHHHHhcCeEEEeeecceeEeeccCc
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEAYAHD---PEN----------RRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 189 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~---~~~----------~~~~~~l~~l~~~~gf~~v~~~~~~~~w~k~l~ 189 (444)
.+...+++++.++|||||+++++........ ... ...-.++...++ .+|.+.........|.+++.
T Consensus 244 ~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL~ 322 (383)
T PRK11705 244 KNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHNFGADYDRTLM 322 (383)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEecChhhHHHHHH
Confidence 3457899999999999999999653211000 000 011234555555 58998888888889999998
Q ss_pred hhhHhhcCCCCCCCcccC-CCCcchhhhhcccccccccccccccc
Q 013393 190 NSCYLKRVPGSRPPLCSS-DDDPDVTWNVLMKACISPYSAKMHHE 233 (444)
Q Consensus 190 ~~c~~~~~~~~~p~lc~~-~~~~~~awy~~l~~ci~~~p~~~~~~ 233 (444)
.+...+.... +..... ++.....|-..+..|...+..+....
T Consensus 323 ~W~~~f~~~~--~~~~~~~~~~~~r~w~~yl~~~~~~F~~~~~~~ 365 (383)
T PRK11705 323 AWHENFEAAW--PELADNYSERFYRMWRYYLLSCAGAFRARDIQL 365 (383)
T ss_pred HHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 8877666531 222222 34556779999999987777654443
No 36
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.35 E-value=6.1e-13 Score=110.61 Aligned_cols=92 Identities=28% Similarity=0.521 Sum_probs=67.2
Q ss_pred EEEECCCcchHHHHHhhC-------CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 48 VLDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 48 VLDVGCGtG~~a~~La~~-------~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
|||+|||+|..+..+++. .++++|+++.++..+..+ ..+.+.++.+.+.|..++++.+++||+|+|+.++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~-~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKR-FSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHH-SHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHh-chhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999999888753 456666665554433322 222356899999999999888889999999776677
Q ss_pred cccc--HHHHHHHHHhhcCCCe
Q 013393 121 WLQR--DGILLLELDRLLRPGG 140 (444)
Q Consensus 121 ~~~d--~~~~L~ei~rvLkPGG 140 (444)
|..+ ...+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 7553 3589999999999998
No 37
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.34 E-value=4.6e-13 Score=110.74 Aligned_cols=93 Identities=26% Similarity=0.409 Sum_probs=55.8
Q ss_pred EEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC-CC-CCCCccEEEecccccccc
Q 013393 49 LDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PY-PSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 49 LDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-p~-~~~sFDlI~~~~~~l~~~ 122 (444)
||||||+|.++..+++. .++++|+++.++..++.+..............+.... .. +.++||+|+++. ++||.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~-vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASN-VLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE--TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhh-hHhhh
Confidence 79999999999888763 6788999988875555444443333333333332222 12 235999999998 68888
Q ss_pred ccHHHHHHHHHhhcCCCeEE
Q 013393 123 QRDGILLLELDRLLRPGGYF 142 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~l 142 (444)
++...+++++.++|||||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
No 38
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.34 E-value=1.2e-11 Score=117.58 Aligned_cols=98 Identities=27% Similarity=0.466 Sum_probs=79.4
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++. .++++|++ +.+++.++++. .++.+...|....++++++||+|+|+. ++|
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~-~l~ 109 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDIS-----AGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNL-ALQ 109 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeCh-----HHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhh-hhh
Confidence 58999999999999999874 34666555 45555555442 356788889888888889999999998 588
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
|..+...++.++.++|+|||+++++.+..
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 88899999999999999999999987653
No 39
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.33 E-value=5e-12 Score=124.10 Aligned_cols=96 Identities=27% Similarity=0.450 Sum_probs=74.6
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||+|||+|.++..+++. ...+..+.+.|+++.+++.|+++..++.+.+.|...+|+++++||+|++..+
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~------ 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA------ 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC------
Confidence 47999999999999988763 1111233444556677777877777888999999999999999999998653
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
...+.++.|+|||||+|++..|..
T Consensus 161 --~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 --PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred --CCCHHHHHhhccCCCEEEEEeCCC
Confidence 124689999999999999987764
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.33 E-value=9.4e-12 Score=123.14 Aligned_cols=129 Identities=19% Similarity=0.355 Sum_probs=87.4
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc-
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~- 123 (444)
+|||+|||+|.++.++++. .|+++|+++.++..++ +.+.+.+.++.+...|....++ +++||+|+|+. ++++..
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~-vl~~l~~ 199 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTV-VLMFLNR 199 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcc-hhhhCCH
Confidence 7999999999999999875 5777777766554433 3444556677777777766555 57899999987 477654
Q ss_pred -cHHHHHHHHHhhcCCCeEEEEEcCC---CCCCC-h-hhHHHHHHHHHHHHhcCeEEEeeecc
Q 013393 124 -RDGILLLELDRLLRPGGYFVYSSPE---AYAHD-P-ENRRIWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 124 -d~~~~L~ei~rvLkPGG~lvis~p~---~~~~~-~-~~~~~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
+...+++++.++|+|||++++.... .+... + ...-.-.++.++.+ +|+++.....
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~e~ 260 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKYNEN 260 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEEecc
Confidence 4568999999999999997664211 11000 0 11112236667766 4888776443
No 41
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.32 E-value=3.9e-12 Score=117.50 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=98.9
Q ss_pred CCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
...++|.|+|||+|..+..|+++- -+..|+++|.|.+|+..|+++.++++|...|...+. |+..+|+++++. +++|+
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNA-vlqWl 105 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANA-VLQWL 105 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhh-hhhhc
Confidence 455689999999999999998852 233566667788888999999999999999988875 457899999887 79999
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeE
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~ 173 (444)
+|...+|..+...|.|||.+.++.|..... ....-+.+.+++.-|.
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPdN~de-----psH~~mr~~A~~~p~~ 151 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPDNLDE-----PSHRLMRETADEAPFA 151 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCCccCc-----hhHHHHHHHHhcCchh
Confidence 999999999999999999999998885422 1234556666665553
No 42
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.32 E-value=9.9e-12 Score=116.74 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=89.0
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecC-ccCC--CCCCCccEEEeccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLP--YPSRSFELAHCSRC 117 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~-~~lp--~~~~sFDlI~~~~~ 117 (444)
..+|||+|||+|.++..+++. .++++|+++.++..+..+.......++.+...|+ +.++ +++++||+|+++.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 458999999999999988763 5788888877665555333322224678888887 6666 77789999998763
Q ss_pred cccccc--------cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 118 RIDWLQ--------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 118 ~l~~~~--------d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
.+|.. ....+++++.++|||||+|+++.+. ......+.+.+++.||.+.
T Consensus 121 -~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~--------~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 121 -DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW--------EGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC--------HHHHHHHHHHHHhCccccc
Confidence 44422 1367999999999999999997654 2334567777888888554
No 43
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.31 E-value=3.7e-11 Score=115.53 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=74.8
Q ss_pred CeEEEECCCcchHHHHHhhC------CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~------~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..+++. .++|+|+++.++..+..+..... ..++.+...|+..++++ .+|+|+|+. .
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~-~ 131 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF-T 131 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec-c
Confidence 38999999999999888763 47777777665544443222111 23578888888888765 589999988 5
Q ss_pred ccccc--cHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 119 IDWLQ--RDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 119 l~~~~--d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+||.. +...++++++++|||||.++++++.
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 77764 3468999999999999999998754
No 44
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=4.8e-11 Score=117.11 Aligned_cols=143 Identities=22% Similarity=0.340 Sum_probs=100.2
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI 90 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~ 90 (444)
||..|....-.++.+.+.+. ++++|||+|||+|.++...++. .++|+|++|..+..++ +.++.++.
T Consensus 142 GTG~HpTT~lcL~~Le~~~~----------~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v 210 (300)
T COG2264 142 GTGTHPTTSLCLEALEKLLK----------KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGV 210 (300)
T ss_pred CCCCChhHHHHHHHHHHhhc----------CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCC
Confidence 67777777777777776663 3458999999999999888773 6899999998775555 45555555
Q ss_pred CcEEEEecCccCCCCC-CCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHh
Q 013393 91 PSTLGVLGTKRLPYPS-RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS 169 (444)
Q Consensus 91 ~~~~~~~d~~~lp~~~-~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~ 169 (444)
+..........+..+. ++||+|+||- +. .-...+..++.+.|||||++++|..- .+.-+.+.+.+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~DvIVANI--LA--~vl~~La~~~~~~lkpgg~lIlSGIl--------~~q~~~V~~a~~~ 278 (300)
T COG2264 211 ELLVQAKGFLLLEVPENGPFDVIVANI--LA--EVLVELAPDIKRLLKPGGRLILSGIL--------EDQAESVAEAYEQ 278 (300)
T ss_pred chhhhcccccchhhcccCcccEEEehh--hH--HHHHHHHHHHHHHcCCCceEEEEeeh--------HhHHHHHHHHHHh
Confidence 5311111122222333 5899999986 22 22358999999999999999998633 2234567888888
Q ss_pred cCeEEEeeec
Q 013393 170 MCWKIVSKKD 179 (444)
Q Consensus 170 ~gf~~v~~~~ 179 (444)
.||+++....
T Consensus 279 ~gf~v~~~~~ 288 (300)
T COG2264 279 AGFEVVEVLE 288 (300)
T ss_pred CCCeEeEEEe
Confidence 9998876643
No 45
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=1.4e-11 Score=112.94 Aligned_cols=101 Identities=21% Similarity=0.333 Sum_probs=80.9
Q ss_pred eEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHHHHcCCCcE-EEEecCccCC-CCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLP-YPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a~e~~~~~~-~~~~d~~~lp-~~~~sFDlI~~~~~~l~~ 121 (444)
.||+||||||..-.++-. ..|+++|-++.+-+-+...++..+..++. |++++.+.+| .+++++|.|+|..+ +.-
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-LCS 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV-LCS 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE-Eec
Confidence 489999999976665542 25777777776665555555555666766 8899999999 78999999999995 666
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++|+.+.|+|+.|+|||||++++..+-
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 799999999999999999999996544
No 46
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.27 E-value=8.9e-11 Score=110.64 Aligned_cols=96 Identities=21% Similarity=0.361 Sum_probs=75.9
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHc---CCCcEEEEecCccCCCCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~lp~~~~sFDlI~~~~~ 117 (444)
.+|||+|||+|.++..+++. .++++|+++ .+++.++++ ..++.+...|..++++++++||+|+++.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~-----~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~- 114 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS-----EMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAF- 114 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH-----HHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEee-
Confidence 48999999999999988764 455666554 444444443 2357788888888888778999999988
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
.+++..+...+++++.+.|+|||++++.+.
T Consensus 115 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 115 GLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred eeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 577778899999999999999999998653
No 47
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.27 E-value=5.5e-12 Score=119.86 Aligned_cols=96 Identities=21% Similarity=0.326 Sum_probs=70.7
Q ss_pred CeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcC-------CC----cEEEEecCccCCCCCCCccEEEe
Q 013393 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-------IP----STLGVLGTKRLPYPSRSFELAHC 114 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~-------~~----~~~~~~d~~~lp~~~~sFDlI~~ 114 (444)
++|||+|||+|.++..|++. |.+++++|+++.+++.|++.. .+ +.+...+.+.+ .+.||.|+|
T Consensus 91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvc 164 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVC 164 (282)
T ss_pred ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeee
Confidence 47999999999999999985 234444455555566665541 11 22333334443 345999999
Q ss_pred ccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 115 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 115 ~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+. +++|..|+..++..+.+.|||||.+++++.+
T Consensus 165 se-vleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 165 SE-VLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HH-HHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 99 6888999999999999999999999998754
No 48
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.26 E-value=1.5e-11 Score=120.26 Aligned_cols=133 Identities=16% Similarity=0.256 Sum_probs=82.9
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcch----HHHHHhhCC----ceEEEcCcccchHHHHHHH
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVAS----FGAYLLSHD----IIAMSLAPNDVHENQIQFA 85 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~----~a~~La~~~----V~gvdis~~dis~a~i~~a 85 (444)
-|.|.+-..++-.....+++...... +.....+|+|+|||||. ++..+++.. .....+.+.|+++.+++.|
T Consensus 70 ~T~FfR~~~~~~~l~~~vlp~l~~~~-~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~A 148 (264)
T smart00138 70 ETRFFRESKHFEALEEKVLPLLIASR-RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKA 148 (264)
T ss_pred CCcccCCcHHHHHHHHHHhHHHHHhc-CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHH
Confidence 35555555544443333333211111 11233489999999994 565555421 0123444445555555555
Q ss_pred HHcC--------------------------------CCcEEEEecCccCCCCCCCccEEEeccccccccc--cHHHHHHH
Q 013393 86 LERG--------------------------------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ--RDGILLLE 131 (444)
Q Consensus 86 ~e~~--------------------------------~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~--d~~~~L~e 131 (444)
++.- ..+.|.+.|....+++.++||+|+|.++ ++|.+ +...++++
T Consensus 149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnv-l~yf~~~~~~~~l~~ 227 (264)
T smart00138 149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNV-LIYFDEPTQRKLLNR 227 (264)
T ss_pred HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechh-HHhCCHHHHHHHHHH
Confidence 5421 2467888888888777889999999985 56654 33589999
Q ss_pred HHhhcCCCeEEEEEcCC
Q 013393 132 LDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 132 i~rvLkPGG~lvis~p~ 148 (444)
++++|+|||+|++....
T Consensus 228 l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 228 FAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHhCCCeEEEEECcc
Confidence 99999999999996544
No 49
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.26 E-value=2.5e-11 Score=111.46 Aligned_cols=93 Identities=25% Similarity=0.409 Sum_probs=72.1
Q ss_pred eEEEECCCcchHHHHHhh-CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCc-cCC-CCCCCccEEEeccccccccc
Q 013393 47 NVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-RLP-YPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~-~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~-~lp-~~~~sFDlI~~~~~~l~~~~ 123 (444)
+|||+|||.|.+..+|.+ +++ +..+.+++++.+..+.++|.++ .+.|.+ .++ |++++||.|+++. +++...
T Consensus 16 rVLDLGCGdG~LL~~L~~~k~v---~g~GvEid~~~v~~cv~rGv~V--iq~Dld~gL~~f~d~sFD~VIlsq-tLQ~~~ 89 (193)
T PF07021_consen 16 RVLDLGCGDGELLAYLKDEKQV---DGYGVEIDPDNVAACVARGVSV--IQGDLDEGLADFPDQSFDYVILSQ-TLQAVR 89 (193)
T ss_pred EEEecCCCchHHHHHHHHhcCC---eEEEEecCHHHHHHHHHcCCCE--EECCHHHhHhhCCCCCccEEehHh-HHHhHh
Confidence 899999999999999987 333 3334456677778888888875 455533 354 8999999999999 588889
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+++.+|+|+.|+ |...+++-|+
T Consensus 90 ~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEEecC
Confidence 999999999777 5577776665
No 50
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.26 E-value=6.4e-11 Score=109.39 Aligned_cols=121 Identities=15% Similarity=0.138 Sum_probs=83.1
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
++|||+|||+|.++..++. ..|+++|.++.++..+.. .+++.+. ++.+...|...++. +++||+|+|.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~-~~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~--~- 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLRE-VKAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA--L- 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHhCCCCeEEEecchhhccc-cCCccEEEehh--h-
Confidence 4899999999998888764 358888888876654442 3333343 57888888877643 57899999864 2
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
.+...+++.+.++|+|||.+++..... .......+.+.+...|++.+....
T Consensus 119 --~~~~~~~~~~~~~LkpgG~lvi~~~~~------~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 119 --ASLNVLLELTLNLLKVGGYFLAYKGKK------YLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred --hCHHHHHHHHHHhcCCCCEEEEEcCCC------cHHHHHHHHHhhhhcCceEeeccc
Confidence 355678899999999999999864321 122233344444447787776644
No 51
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.25 E-value=1.4e-10 Score=110.43 Aligned_cols=101 Identities=19% Similarity=0.298 Sum_probs=76.2
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHH-cCCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e-~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++. .++++|+++..+..++.+.... ...++.+...|...+++++++||+|+++. .+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~-~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF-GL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec-cc
Confidence 48999999999999888753 4667766665444333222211 12356778888888887778999999988 47
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
++..+...++.++.++|+|||.+++.+.
T Consensus 132 ~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 132 RNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred ccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 7778999999999999999999988643
No 52
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.22 E-value=9.6e-11 Score=109.32 Aligned_cols=122 Identities=15% Similarity=0.218 Sum_probs=85.3
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC---CCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp---~~~~sFDlI~~~~~~ 118 (444)
.+|||||||+|.++..++++ .++|+|+++..+..+..+..+....++.+...|+..++ +++++||.|+++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p- 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP- 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC-
Confidence 47999999999999988874 68888888776655554333332336788888876643 45678999998763
Q ss_pred ccccccH--------HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-eEEEe
Q 013393 119 IDWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 176 (444)
Q Consensus 119 l~~~~d~--------~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~g-f~~v~ 176 (444)
.+|.... ..+++++.++|||||.|++++.. ......+.+.+...+ |+.+.
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~--------~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN--------EPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC--------HHHHHHHHHHHHhCCCeEecc
Confidence 5553321 47999999999999999997544 123445555555544 76554
No 53
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.22 E-value=1e-11 Score=115.60 Aligned_cols=132 Identities=26% Similarity=0.325 Sum_probs=99.5
Q ss_pred CCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-CC-CCCCCccEEEecccccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP-YPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp-~~~~sFDlI~~~~~~l~~~ 122 (444)
.+++||+|||||..+..|-.. +-++++.|+|++|+..|.+++.--.+.+.+... ++ ..++.||+|++.. ++.|+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD-Vl~Yl 201 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD-VLPYL 201 (287)
T ss_pred cceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh-HHHhh
Confidence 679999999999999888663 335666788899999999998765555555432 22 3467899999988 79999
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCCC--C--CChhhH---HHHHHHHHHHHhcCeEEEeeecc
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEAY--A--HDPENR---RIWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~~--~--~~~~~~---~~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
-+.+.++.-+...|+|||.|.||.-... . ....+. +.-..+..+++..||+++..+..
T Consensus 202 G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 202 GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 9999999999999999999999863311 1 111111 12347889999999999887653
No 54
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.21 E-value=9.3e-11 Score=108.67 Aligned_cols=135 Identities=19% Similarity=0.332 Sum_probs=89.8
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc-
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~- 123 (444)
++||+|||.|..+.+|+++ .|+++|.++..+... .+.|.+.+.++...+.|.....++ +.||+|+|.. +++|+.
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l-~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~-v~~fL~~ 109 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVTAVDISPVALEKL-QRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTV-VFMFLQR 109 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHH-HHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEES-SGGGS-G
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHH-HHHHhhcCceeEEEEecchhcccc-CCcCEEEEEE-EeccCCH
Confidence 8999999999999999997 578888888766543 357777888999999998887775 6899999865 466643
Q ss_pred -cHHHHHHHHHhhcCCCeEEEEEcC---CCCCCC--hhhHHHHHHHHHHHHhcCeEEEeeecceeEeec
Q 013393 124 -RDGILLLELDRLLRPGGYFVYSSP---EAYAHD--PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAK 186 (444)
Q Consensus 124 -d~~~~L~ei~rvLkPGG~lvis~p---~~~~~~--~~~~~~~~~l~~l~~~~gf~~v~~~~~~~~w~k 186 (444)
....++..+...++|||++++.+. ..+... ....-.-.++..... +|+++........-+|
T Consensus 110 ~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E~~g~~h~ 176 (192)
T PF03848_consen 110 ELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNEDVGELHR 176 (192)
T ss_dssp GGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEccccceee
Confidence 335799999999999999887431 111110 000001125555555 6988876544443333
No 55
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.21 E-value=1.6e-10 Score=109.59 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=86.7
Q ss_pred CCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
..+|||+|||+|.++..+++. .++|+|+++.++..++.+.. ..+ .++.+.+.|...++ ++||+|++...+.+
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIH 131 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhhCC---CCcCEEEEhhHHHh
Confidence 348999999999999999875 56777776655544443322 222 25778888877765 78999999885444
Q ss_pred cc-ccHHHHHHHHHhhcCCCeEEEEEcCCCCC-----------CChh----hHHHHHHHHHHHHhcCeEEEeeec
Q 013393 121 WL-QRDGILLLELDRLLRPGGYFVYSSPEAYA-----------HDPE----NRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 121 ~~-~d~~~~L~ei~rvLkPGG~lvis~p~~~~-----------~~~~----~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+. ++...++.++.+++++++++.++...... .... ....-.++.++++++||+++....
T Consensus 132 ~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeec
Confidence 32 34568899999999988887764322110 0000 000124788889999998887653
No 56
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.21 E-value=8.7e-11 Score=108.12 Aligned_cols=100 Identities=23% Similarity=0.305 Sum_probs=71.0
Q ss_pred CCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHc---CCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
...+++||+|||.|.++..|+.+ +-.+...|+++..++.|+++ ..++.+.+.+.... .|+++||+||++. ++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SE-Vl 116 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSE-VL 116 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES--G
T ss_pred cccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEeh-Hh
Confidence 55568999999999999999986 33444445556666777766 34678888886554 4678999999999 68
Q ss_pred ccccc---HHHHHHHHHhhcCCCeEEEEEcC
Q 013393 120 DWLQR---DGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 120 ~~~~d---~~~~L~ei~rvLkPGG~lvis~p 147 (444)
+|..+ ...++..+...|+|||.+++.+.
T Consensus 117 YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 117 YYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 88765 34789999999999999999654
No 57
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.20 E-value=4.8e-11 Score=120.71 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=74.2
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
+|||+|||+|.++..++++ .++++|+++.++..+..+. ...+....+...|... ..+++||+|+|+. .+|..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl-~~n~l~~~~~~~D~~~--~~~~~fDlIvsNP-PFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL-AANGLEGEVFASNVFS--DIKGRFDMIISNP-PFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCEEEEccccc--ccCCCccEEEECC-CccCC
Confidence 7999999999999998874 5778888776665555333 3345556666556433 2357899999987 35542
Q ss_pred -----ccHHHHHHHHHhhcCCCeEEEEEcCCCCCC
Q 013393 123 -----QRDGILLLELDRLLRPGGYFVYSSPEAYAH 152 (444)
Q Consensus 123 -----~d~~~~L~ei~rvLkPGG~lvis~p~~~~~ 152 (444)
.....+++++.+.|||||.+++.......+
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y 309 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPY 309 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCCh
Confidence 234689999999999999999987665443
No 58
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.19 E-value=5.7e-10 Score=103.26 Aligned_cols=118 Identities=11% Similarity=0.001 Sum_probs=82.5
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..+++. .++++|+++..+..++.+..+....++.+...+.. .++ .++||+|++... .
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~-~-- 107 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGS-G-- 107 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCC-c--
Confidence 38999999999999988763 67888888766655543332222234566665543 233 367999998763 2
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
.....++.++.+.|+|||++++.... .....++.+++++.||+.+..
T Consensus 108 -~~~~~~l~~~~~~Lk~gG~lv~~~~~--------~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 108 -GNLTAIIDWSLAHLHPGGRLVLTFIL--------LENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred -cCHHHHHHHHHHhcCCCeEEEEEEec--------HhhHHHHHHHHHHCCCCcceE
Confidence 23567899999999999999985432 233567788999999975544
No 59
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.19 E-value=1.6e-10 Score=114.12 Aligned_cols=143 Identities=23% Similarity=0.383 Sum_probs=95.0
Q ss_pred CCC--CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHH
Q 013393 11 PGG--GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFA 85 (444)
Q Consensus 11 pg~--gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a 85 (444)
||. ||..|....-.++.+.+... ++ ++|||+|||||.++...++ +.|+++|++|..+..++ +.+
T Consensus 136 Pg~AFGTG~H~TT~lcl~~l~~~~~-------~g---~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~ 204 (295)
T PF06325_consen 136 PGMAFGTGHHPTTRLCLELLEKYVK-------PG---KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENA 204 (295)
T ss_dssp TTSSS-SSHCHHHHHHHHHHHHHSS-------TT---SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHH
T ss_pred CCCcccCCCCHHHHHHHHHHHHhcc-------CC---CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHH
Confidence 553 55555555666666665532 23 3899999999999888776 36899999998775555 445
Q ss_pred HHcCCCcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHH
Q 013393 86 LERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYD 165 (444)
Q Consensus 86 ~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~ 165 (444)
..++....+.+.... ....+.||+|+++-. . .-...++..+.++|+|||++++|..-. ...+.+.+
T Consensus 205 ~~N~~~~~~~v~~~~--~~~~~~~dlvvANI~-~---~vL~~l~~~~~~~l~~~G~lIlSGIl~--------~~~~~v~~ 270 (295)
T PF06325_consen 205 ELNGVEDRIEVSLSE--DLVEGKFDLVVANIL-A---DVLLELAPDIASLLKPGGYLILSGILE--------EQEDEVIE 270 (295)
T ss_dssp HHTT-TTCEEESCTS--CTCCS-EEEEEEES--H---HHHHHHHHHCHHHEEEEEEEEEEEEEG--------GGHHHHHH
T ss_pred HHcCCCeeEEEEEec--ccccccCCEEEECCC-H---HHHHHHHHHHHHhhCCCCEEEEccccH--------HHHHHHHH
Confidence 556665555544222 233588999998862 2 233578888999999999999986432 33567777
Q ss_pred HHHhcCeEEEeeec
Q 013393 166 LLKSMCWKIVSKKD 179 (444)
Q Consensus 166 l~~~~gf~~v~~~~ 179 (444)
.+++ ||+++....
T Consensus 271 a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 271 AYKQ-GFELVEERE 283 (295)
T ss_dssp HHHT-TEEEEEEEE
T ss_pred HHHC-CCEEEEEEE
Confidence 7776 998876643
No 60
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.18 E-value=3e-10 Score=112.47 Aligned_cols=116 Identities=16% Similarity=0.264 Sum_probs=78.7
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCc--EEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPS--TLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~--~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++. .++++|+++.++..++.+. ...+... .+...+ ..+..+++||+|+|+.. .
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~-~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~-~- 235 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNA-ELNQVSDRLQVKLIY--LEQPIEGKADVIVANIL-A- 235 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCcceEEEecc--cccccCCCceEEEEecC-H-
Confidence 48999999999998887763 5788888887665555333 3333332 233332 23344678999999762 2
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
.....++.++.++|||||+++++... ......+.+.+++. |+++..
T Consensus 236 --~~l~~ll~~~~~~LkpgG~li~sgi~--------~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKPGGWLILSGIL--------ETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEeCc--------HhHHHHHHHHHHcc-CceeeE
Confidence 23457899999999999999998643 12345667777665 766654
No 61
>PRK06202 hypothetical protein; Provisional
Probab=99.18 E-value=3.5e-10 Score=108.31 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=68.4
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
..+|||+|||+|.++..|++. .-....+.+.|+++.+++.|+++. .++.+.+.+...+++++++||+|+|+. ++
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~-~l 139 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH-FL 139 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC-ee
Confidence 458999999999998888641 111123444455556666666552 345666666667777778999999999 58
Q ss_pred cccccH--HHHHHHHHhhcCCCeEEEEE
Q 013393 120 DWLQRD--GILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 120 ~~~~d~--~~~L~ei~rvLkPGG~lvis 145 (444)
||.++. ..+++++.|+++ |.+++.
T Consensus 140 hh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 140 HHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred ecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 887765 479999999998 455554
No 62
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.17 E-value=2.7e-10 Score=107.98 Aligned_cols=133 Identities=17% Similarity=0.323 Sum_probs=92.5
Q ss_pred CCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCC-CCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP-SRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~-~~sFDlI~~~~~~l~ 120 (444)
..+|||+|||+|.++..+++. .++++|+++..+..+..+.. ..+. ++.+...+...++.. +++||+|+++. .++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~-~l~ 123 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCME-VLE 123 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehh-HHH
Confidence 348999999999999888764 46667666655444432222 2233 467777777666644 37899999988 588
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC---------------hh---hHH---HHHHHHHHHHhcCeEEEeeec
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD---------------PE---NRR---IWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~---------------~~---~~~---~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+..+...++.++.++|+|||.++++.+...... +. ... .-.++.+++++.||++++...
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeeee
Confidence 889999999999999999999998765321000 00 000 123678899999999887654
No 63
>PRK04266 fibrillarin; Provisional
Probab=99.17 E-value=4.7e-10 Score=107.18 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=87.6
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC----CCCCCCc
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL----PYPSRSF 109 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l----p~~~~sF 109 (444)
.++++. +|||+|||+|.++.++++. .|+++|+++.++.... +.++++ .++.+...|.... +++ ++|
T Consensus 69 ~i~~g~---~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~ 142 (226)
T PRK04266 69 PIKKGS---KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKV 142 (226)
T ss_pred CCCCCC---EEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccC
Confidence 344554 8999999999999999874 5888888887665443 344433 4567777776531 223 569
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC--CCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE--AYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~--~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
|+|++... .. .....++.++.++|||||+++++.+. ..... ...+.+.+..+.++++||+.+....
T Consensus 143 D~i~~d~~-~p--~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~-~~~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 143 DVIYQDVA-QP--NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK-DPKEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred CEEEECCC-Ch--hHHHHHHHHHHHhcCCCcEEEEEEecccccCcC-CHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 99986532 11 12245689999999999999996332 11111 1123445667899999999887654
No 64
>PRK06922 hypothetical protein; Provisional
Probab=99.17 E-value=8.5e-11 Score=125.60 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=75.0
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--CCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++ ..++|+|+++.++..++.+ +...+.+..+..+|...+| +++++||+|+++.+ +
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Arar-l~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v-L 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKK-KQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI-L 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-hhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH-H
Confidence 3899999999999888875 3677777776655444322 2222456677778887777 78899999999874 5
Q ss_pred ccc-------------ccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 120 DWL-------------QRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 120 ~~~-------------~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
|+. .+...++++++++|||||++++.+.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 532 2456899999999999999999764
No 65
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.16 E-value=1.7e-10 Score=108.55 Aligned_cols=96 Identities=14% Similarity=0.063 Sum_probs=71.3
Q ss_pred CeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc--
Q 013393 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ-- 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~-- 123 (444)
.+|||+|||+|.++..|++.. -+.++.++|+++.+++.|+++..++.+...|... |+++++||+|+|+.+ ++|..
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~v-L~hl~p~ 121 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGV-LIHINPD 121 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECCh-hhhCCHH
Confidence 379999999999999887641 1234455566666777777765567777788776 888899999999884 65543
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEc
Q 013393 124 RDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+...+++++.|++ ++++++..
T Consensus 122 ~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 122 NLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHhhc--CcEEEEEE
Confidence 3468999999998 46777754
No 66
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.15 E-value=4.2e-10 Score=103.42 Aligned_cols=121 Identities=16% Similarity=0.124 Sum_probs=84.4
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
++|||+|||+|.++..+++. .++++|+++.++..+..+.. ..+.++.+...|....+ .++||+|+++.. .+...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p-~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPP-YLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCC-CCCCc
Confidence 37999999999999999875 47778777766554443332 33456677777765543 458999999863 32222
Q ss_pred c---------------------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 124 R---------------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 124 d---------------------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
+ ...++.++.++|||||.+++..+... .-.++.+.+++.||+.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--------~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--------GEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--------ChHHHHHHHHhCCCeEEEEE
Confidence 1 24689999999999999998754321 13466788888999766543
No 67
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.15 E-value=7.7e-11 Score=107.63 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=75.9
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCC-cEE
Q 013393 20 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STL 94 (444)
Q Consensus 20 g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~-~~~ 94 (444)
+.+.-.+.+.+.+... ...+|||+|||+|.++..+++. .|+++|+++..+..+..+ +...+.. +.+
T Consensus 15 ~~d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n-~~~n~~~~v~~ 85 (170)
T PF05175_consen 15 RLDAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRN-AERNGLENVEV 85 (170)
T ss_dssp SHHHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHH-HHHTTCTTEEE
T ss_pred CCCHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH-HHhcCcccccc
Confidence 3444444555555421 2238999999999999999884 377777777655444433 3333444 667
Q ss_pred EEecCccCCCCCCCccEEEecccccccccc-----HHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 95 GVLGTKRLPYPSRSFELAHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 95 ~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d-----~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
...|... +.++++||+|+|+.- ++...+ ...++.++.+.|||||.+++....
T Consensus 86 ~~~d~~~-~~~~~~fD~Iv~NPP-~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 86 VQSDLFE-ALPDGKFDLIVSNPP-FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp EESSTTT-TCCTTCEEEEEE----SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred ccccccc-cccccceeEEEEccc-hhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 6666533 233689999999862 333222 358899999999999999775443
No 68
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.15 E-value=5.9e-10 Score=95.05 Aligned_cols=97 Identities=15% Similarity=0.056 Sum_probs=68.8
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-CCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..++++ .++++|+++..+..+..........++.+...|... ++...++||.|++..+ .
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~-~- 98 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS-G- 98 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc-c-
Confidence 38999999999999999874 577887777665554433332222356666666543 3333468999998763 2
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.....+++++.+.|||||+|+++.
T Consensus 99 --~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 99 --GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred --hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 234689999999999999999853
No 69
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.14 E-value=8e-10 Score=107.20 Aligned_cols=114 Identities=19% Similarity=0.272 Sum_probs=77.0
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||+|||+|.++..+++. .++++|+++.++..+..+. ...+....+. ++..+.+||+|+|+.. .
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~-~~~~~~~~~~------~~~~~~~fD~Vvani~-~--- 189 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENA-ELNGVELNVY------LPQGDLKADVIVANIL-A--- 189 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCceEE------EccCCCCcCEEEEcCc-H---
Confidence 48999999999998887763 3778877776655444332 2223321111 1212237999998752 2
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.....++.++.++|||||+++++.... .....+...+++.||+++...
T Consensus 190 ~~~~~l~~~~~~~LkpgG~lilsgi~~--------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 190 NPLLELAPDLARLLKPGGRLILSGILE--------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECcH--------hhHHHHHHHHHHCCCEEEEEE
Confidence 234578999999999999999975432 234577888899999877553
No 70
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.13 E-value=8e-10 Score=105.62 Aligned_cols=131 Identities=15% Similarity=0.327 Sum_probs=89.8
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC-CCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp-~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||||||+|.++..+++. .++++|+++..+..+.... ...+..+.+...+....+ ..+++||+|+|+. .+++.
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~-~l~~~ 127 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHA-LESGLKIDYRQTTAEELAAEHPGQFDVVTCME-MLEHV 127 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHH-HHcCCceEEEecCHHHhhhhcCCCccEEEEhh-Hhhcc
Confidence 47999999999999888875 4666666554443333222 122445666666666554 3457899999998 47777
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCCh------------------hhHH---HHHHHHHHHHhcCeEEEeee
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDP------------------ENRR---IWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~------------------~~~~---~~~~l~~l~~~~gf~~v~~~ 178 (444)
.+...+++++.++|+|||.++++.+....... .... .-.++.+++++.||+++...
T Consensus 128 ~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 128 PDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 89999999999999999999998654211100 0000 11357889999999988664
No 71
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.12 E-value=5.4e-10 Score=104.08 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=82.6
Q ss_pred eEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-C-CCCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-PYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-l-p~~~~sFDlI~~~~~~l~~ 121 (444)
+|||+|||+|.++..+++. .++|+|+ ++.+++.+++++ +.+...|... + ++++++||+|+|+. .++|
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~~~~giD~-----s~~~i~~a~~~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~~-~l~~ 87 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQVRGYGIEI-----DQDGVLACVARG--VNVIQGDLDEGLEAFPDKSFDYVILSQ-TLQA 87 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCCcEEEEeC-----CHHHHHHHHHcC--CeEEEEEhhhcccccCCCCcCEEEEhh-HhHc
Confidence 8999999999999888764 3455554 455556665544 4566677654 4 36778999999998 5888
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCC----------------C-------CC--hhhHHHHHHHHHHHHhcCeEEEe
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAY----------------A-------HD--PENRRIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~----------------~-------~~--~~~~~~~~~l~~l~~~~gf~~v~ 176 (444)
..+...+++++.|+++++ +++.|... . .. ........++.+++++.||+++.
T Consensus 88 ~~d~~~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 88 TRNPEEILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred CcCHHHHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEE
Confidence 899999999999887653 33322210 0 00 01112345788899999998876
Q ss_pred eec
Q 013393 177 KKD 179 (444)
Q Consensus 177 ~~~ 179 (444)
...
T Consensus 165 ~~~ 167 (194)
T TIGR02081 165 RAA 167 (194)
T ss_pred EEE
Confidence 543
No 72
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.12 E-value=5e-10 Score=109.45 Aligned_cols=132 Identities=21% Similarity=0.239 Sum_probs=91.5
Q ss_pred CCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc-CCCcEEEE--ecCccCCCCCCCccEEEeccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPSTLGV--LGTKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~--~d~~~lp~~~~sFDlI~~~~~ 117 (444)
..++|||||||.|.++..++.+ .|+|+|-++ ....+.+++++. +....+.. ...+.+|. .++||+|+|..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~--lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG- 190 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP--LFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG- 190 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh--HHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee-
Confidence 4569999999999999888874 467766554 344444444443 33333222 46788887 68999999988
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcCCCC----------CCChhh-----HHHHHHHHHHHHhcCeEEEeeec
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY----------AHDPEN-----RRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~----------~~~~~~-----~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
++.|..++-..|.++...|+|||.+++.+.-.. .+...- ...-..+...++++||+.+..-+
T Consensus 191 VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 191 VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEec
Confidence 688889999999999999999999997441110 000000 11224788899999998776644
No 73
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.11 E-value=1.2e-09 Score=105.18 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=82.7
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++. .++++|+++..+..+.... ...+. ++.+...|... ++++++||+|+|+.-...
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA-ARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 47999999999999999874 6778887776665444332 23343 46777777654 456788999998631110
Q ss_pred -----c--------------------cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 121 -----W--------------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 121 -----~--------------------~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
. ......++.++.++|+|||.+++.... ..-..+.+++++.||+.+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---------~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---------DQGEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---------cHHHHHHHHHHhCCCCce
Confidence 0 011236789999999999999985421 123467888888999765
Q ss_pred ee
Q 013393 176 SK 177 (444)
Q Consensus 176 ~~ 177 (444)
..
T Consensus 238 ~~ 239 (251)
T TIGR03534 238 ET 239 (251)
T ss_pred EE
Confidence 54
No 74
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.10 E-value=5.6e-10 Score=105.48 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=67.7
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--------CCCCCccEE
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELA 112 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--------~~~~sFDlI 112 (444)
.+|||+|||+|.++..+++. .|+++|+++.. ...++.+..+|+...+ +.+++||+|
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V 121 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIVGVDFLQGDFRDELVLKALLERVGDSKVQVV 121 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----------CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEE
Confidence 38999999999999988773 58888887721 1235678888877643 567899999
Q ss_pred EeccccccccccH-----------HHHHHHHHhhcCCCeEEEEEcC
Q 013393 113 HCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 113 ~~~~~~l~~~~d~-----------~~~L~ei~rvLkPGG~lvis~p 147 (444)
+|+.+ .++..+. ..+|+++.++|||||.|++...
T Consensus 122 ~S~~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 122 MSDMA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred ecCCC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99763 4443221 4689999999999999999643
No 75
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.09 E-value=2.4e-10 Score=105.96 Aligned_cols=118 Identities=20% Similarity=0.325 Sum_probs=87.6
Q ss_pred CCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEec-CccCCCCCCCccEEEecccccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d-~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
...-|||||||+|.-+..|.+. ..+|+|+|+.|++.++ ++.....+..+| -+.+||++++||.+++.. ++.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~-----~~e~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAV-----ERELEGDLILCDMGEGLPFRPGTFDGVISIS-AVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHH-----HhhhhcCeeeeecCCCCCCCCCccceEEEee-eee
Confidence 5668999999999998888764 5678888877765554 332333455555 367999999999999876 577
Q ss_pred cccc-------H----HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeE
Q 013393 121 WLQR-------D----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 121 ~~~d-------~----~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~ 173 (444)
|.-+ + ..||..++.+|++|++.+++ +.++...+-+.+...+..+||.
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q------fYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ------FYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEE------ecccchHHHHHHHHHHHhhccC
Confidence 7422 1 25788899999999999995 3344555667788888888985
No 76
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.09 E-value=1.6e-09 Score=108.16 Aligned_cols=98 Identities=20% Similarity=0.331 Sum_probs=68.8
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.++|||||||+|.++..++++ .++++|+ +..+..+. +.+.+.+. ++.+...|+...+++ .+|+|+++.+
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~~- 224 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCRI- 224 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCC--CCCEEEeEhh-
Confidence 348999999999999999875 4666765 33332222 23333343 467778887666665 3799998884
Q ss_pred ccccccH--HHHHHHHHhhcCCCeEEEEEcC
Q 013393 119 IDWLQRD--GILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 119 l~~~~d~--~~~L~ei~rvLkPGG~lvis~p 147 (444)
+|...+. ..+++++++.|||||++++.+.
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 5543333 4799999999999999999764
No 77
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.09 E-value=4.5e-10 Score=114.65 Aligned_cols=101 Identities=14% Similarity=0.200 Sum_probs=69.2
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC---CCcEEEEecCccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~---~~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..++++ .|+++|+++.++..++.+...... .++.+...|.... +++++||+|+|+..
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP- 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP- 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC-
Confidence 37999999999999999874 578888877666555443322221 1345655554321 33468999999863
Q ss_pred cccc---c--cHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 119 IDWL---Q--RDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 119 l~~~---~--d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+|.. . ...+++.++.++|+|||.|++....
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 4332 1 2247899999999999999997543
No 78
>PRK14967 putative methyltransferase; Provisional
Probab=99.09 E-value=3.2e-09 Score=101.18 Aligned_cols=120 Identities=17% Similarity=0.133 Sum_probs=79.6
Q ss_pred eEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
+|||+|||+|.++..+++. .++++|+++..+..++. .+...+.++.+...|... .+++++||+|+|+.-......
T Consensus 39 ~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~ 116 (223)
T PRK14967 39 RVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL-NALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAPP 116 (223)
T ss_pred eEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCCc
Confidence 8999999999999988774 56788777765544432 223335556666667644 245678999999742111111
Q ss_pred --------------------cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEe
Q 013393 124 --------------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 124 --------------------d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~ 176 (444)
....++.++.++|||||.+++...... ...++.+++++.||....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--------~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 117 DAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--------GVERTLTRLSEAGLDAEV 181 (223)
T ss_pred ccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--------CHHHHHHHHHHCCCCeEE
Confidence 134678899999999999998654421 133566677778885443
No 79
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.09 E-value=8.7e-10 Score=105.49 Aligned_cols=169 Identities=18% Similarity=0.281 Sum_probs=113.2
Q ss_pred CCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC
Q 013393 12 GGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG 89 (444)
Q Consensus 12 g~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~ 89 (444)
|.|.+|--+.+++.+.+...-. ...++.+..++||||+|.|..+..++.. .|.+.++|+ .|+..-+++|
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~----~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~-----~Mr~rL~~kg 136 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGF----SWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASP-----PMRWRLSKKG 136 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhcc----CCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCH-----HHHHHHHhCC
Confidence 6788898888888776653311 1223335668999999999999999873 566665554 4555555566
Q ss_pred CCcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCC-----------CCh----
Q 013393 90 IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-----------HDP---- 154 (444)
Q Consensus 90 ~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~-----------~~~---- 154 (444)
.. +.+..++.-.+.+||+|.|.+ ++.-+.++..+|+++.+.|+|+|+++++.--++. +..
T Consensus 137 ~~----vl~~~~w~~~~~~fDvIscLN-vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~ 211 (265)
T PF05219_consen 137 FT----VLDIDDWQQTDFKFDVISCLN-VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLP 211 (265)
T ss_pred Ce----EEehhhhhccCCceEEEeehh-hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcC
Confidence 43 334334443456899999998 6888899999999999999999999985411110 000
Q ss_pred hhHHHH----HHHHHHHHhcCeEEEeeecceeEeeccCchhhHhhcCCCCCCCcccCCCCcchhhhh
Q 013393 155 ENRRIW----NAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNV 217 (444)
Q Consensus 155 ~~~~~~----~~l~~l~~~~gf~~v~~~~~~~~w~k~l~~~c~~~~~~~~~p~lc~~~~~~~~awy~ 217 (444)
.....| ..+.+.++.+||++.... ..|.+|+ .|...+.|+
T Consensus 212 ~~g~~~E~~v~~l~~v~~p~GF~v~~~t---------------------r~PYLcE--GD~~~~~Y~ 255 (265)
T PF05219_consen 212 VKGATFEEQVSSLVNVFEPAGFEVERWT---------------------RLPYLCE--GDLYQSYYV 255 (265)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCEEEEEe---------------------ccCcccc--CcccCceEE
Confidence 001122 245578899999887652 4578888 455555554
No 80
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.08 E-value=4e-10 Score=106.70 Aligned_cols=99 Identities=15% Similarity=0.023 Sum_probs=70.7
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHH------------HHcCCCcEEEEecCccCCCC-CCCccE
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFA------------LERGIPSTLGVLGTKRLPYP-SRSFEL 111 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a------------~e~~~~~~~~~~d~~~lp~~-~~sFDl 111 (444)
+|||+|||.|..+.+|+++ .|+|+|+|+..+..++.+.. ..++.++.+.++|...++.. .+.||.
T Consensus 37 rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~ 116 (213)
T TIGR03840 37 RVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDA 116 (213)
T ss_pred eEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCE
Confidence 8999999999999999986 67888887766653321110 00234577788888777642 457999
Q ss_pred EEeccccccccccH-HHHHHHHHhhcCCCeEEEEE
Q 013393 112 AHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 112 I~~~~~~l~~~~d~-~~~L~ei~rvLkPGG~lvis 145 (444)
|+-..+.+|..++. ..+++.+.++|||||++++.
T Consensus 117 i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 117 VYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred EEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 99877544443332 47999999999999986654
No 81
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.08 E-value=6.8e-10 Score=111.98 Aligned_cols=121 Identities=19% Similarity=0.172 Sum_probs=86.4
Q ss_pred eEEEECCCcchHHHHHhh--CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccc-----cc
Q 013393 47 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRC-----RI 119 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~-----~l 119 (444)
+|||+|||+|.++..++. ..++|+|+++.++..+..+.......++.+...|+.++|+++++||+|+++.- ..
T Consensus 185 ~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~ 264 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTA 264 (329)
T ss_pred EEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccc
Confidence 899999999998776654 46888888887766555443322223357788899899988889999999621 01
Q ss_pred cc--c-ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 120 DW--L-QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 120 ~~--~-~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
.. . .-...++.++.++|||||++++..|.. ..+.++++..|| ++....
T Consensus 265 ~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~-----------~~~~~~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 265 AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR-----------IDLESLAEDAFR-VVKRFE 315 (329)
T ss_pred cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC-----------CCHHHHHhhcCc-chheee
Confidence 10 1 114689999999999999999877652 134567888999 665543
No 82
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.06 E-value=2.4e-09 Score=100.14 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=81.4
Q ss_pred eEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCcc-CCCCCCCccEEEecccc
Q 013393 47 NVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR-LPYPSRSFELAHCSRCR 118 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~-lp~~~~sFDlI~~~~~~ 118 (444)
+|||+|||+|.++..++. ..++++|+++.++..++.+ ++..+ .++.+...|..+ ++..+++||.|++...
T Consensus 43 ~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n-~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~- 120 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN-AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG- 120 (198)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC-
Confidence 899999999999988764 2578888888766544433 33334 356676777654 3333468999997541
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEE
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 174 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~ 174 (444)
..+...++.++.++|||||++++.... .....++...+++.||+.
T Consensus 121 ---~~~~~~~l~~~~~~LkpgG~lv~~~~~--------~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 121 ---SEKLKEIISASWEIIKKGGRIVIDAIL--------LETVNNALSALENIGFNL 165 (198)
T ss_pred ---cccHHHHHHHHHHHcCCCcEEEEEeec--------HHHHHHHHHHHHHcCCCe
Confidence 256678999999999999999985432 123467777888889843
No 83
>PRK14968 putative methyltransferase; Provisional
Probab=99.04 E-value=3.8e-09 Score=97.03 Aligned_cols=122 Identities=15% Similarity=0.193 Sum_probs=81.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCC---cEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~---~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
++|||+|||+|.++..+++. .++++|+++..+..++.+. ...+.. +.+...|... ++++++||+|+++....+
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNA-KLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLP 102 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHH-HHcCCCCcceEEEeccccc-cccccCceEEEECCCcCC
Confidence 38999999999999998864 6777777765554443322 222322 6666666544 344568999998753221
Q ss_pred c--------------------cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 121 W--------------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 121 ~--------------------~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
. ......+++++.++|||||.+++..+... .-..+.+++++.||++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~--------~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 103 TEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT--------GEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred CCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC--------CHHHHHHHHHHCCCeeeee
Confidence 0 01134689999999999999988765422 1245778899999976644
No 84
>PTZ00146 fibrillarin; Provisional
Probab=99.04 E-value=3.9e-09 Score=103.63 Aligned_cols=134 Identities=13% Similarity=0.130 Sum_probs=86.8
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc---CCCCCCCc
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---LPYPSRSF 109 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~---lp~~~~sF 109 (444)
.++++. +|||+|||+|.++.++++. .|+++|+++.+. +.+++.+.++ .++.+...|... ...+.++|
T Consensus 129 ~IkpG~---~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 129 PIKPGS---KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ccCCCC---EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc-CCCEEEECCccChhhhhcccCCC
Confidence 345554 8999999999999999874 489999886433 2344555544 567777777643 22234589
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCC-CChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~-~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
|+|++... + ..+...++.++.++|||||+|++....... ..+.....+.+-.+.+++.||+.+....
T Consensus 204 DvV~~Dva--~-pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 204 DVIFADVA--Q-PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLT 271 (293)
T ss_pred CEEEEeCC--C-cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 99998763 2 233446777999999999999985322111 1111122233323778889998776543
No 85
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.03 E-value=2.1e-09 Score=101.20 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=66.0
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|..+..+++ ..|+++|+++..+..+..+. ...+. ++.+...|........++||+|++...
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l-~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~- 151 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI-ERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA- 151 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEECCcccCCccCCCccEEEEccC-
Confidence 3899999999999988875 35788888776654444333 23333 367777787654444578999998874
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.++. ..++.+.|+|||++++..
T Consensus 152 ~~~~------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 ASTI------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cchh------hHHHHHhcCcCcEEEEEE
Confidence 4432 257889999999999853
No 86
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.03 E-value=4.2e-10 Score=105.90 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=79.2
Q ss_pred CeEEEECCCcchHHHHHhh--CCceEEEcCcccchHHHHHHHHHcCCCcE----EEEec--CccCCCCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPST----LGVLG--TKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~~~~~~----~~~~d--~~~lp~~~~sFDlI~~~~~ 117 (444)
+.++|||||+|..++-+++ .+|+|+|+ +++|++.|.+...... ....+ ...|.-.++|.|+|+|..|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~-----s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDV-----SEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecC-----CHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3799999999977777776 37777755 5667777776533221 11222 2333334899999999996
Q ss_pred cccccccHHHHHHHHHhhcCCCe-EEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeE
Q 013393 118 RIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG-~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~ 173 (444)
+|| -|.+++++++.|+||+.| .+.+ |.+.+ ..-.|+++..++.+.+++
T Consensus 110 -~HW-Fdle~fy~~~~rvLRk~Gg~iav-----W~Y~d-d~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 110 -VHW-FDLERFYKEAYRVLRKDGGLIAV-----WNYND-DFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred -HHh-hchHHHHHHHHHHcCCCCCEEEE-----EEccC-CCcCCHHHHHHHHHHhhc
Confidence 999 588999999999999877 5554 22222 234577888888877765
No 87
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.02 E-value=2.8e-09 Score=106.55 Aligned_cols=128 Identities=19% Similarity=0.265 Sum_probs=77.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc-----CCCcEEEEecCccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..+++. .|+|+|+++.++..++.+..... ..++.+...|...+ +++||+|+|..++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEE
Confidence 48999999999999999885 46777777666655443322210 12456666665443 5789999999864
Q ss_pred ccccccH--HHHHHHHHhhcCCCeEEEEEcCCCCCCCh------------hhHH----HHHHHHHHHHhcCeEEEeee
Q 013393 119 IDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDP------------ENRR----IWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 119 l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~~~~~------------~~~~----~~~~l~~l~~~~gf~~v~~~ 178 (444)
+|+ ++. ..+++.+.+ +.+||.++...+....+.. .... .-+++.+++++.||++...+
T Consensus 223 ~H~-p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 223 IHY-PQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred Eec-CHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 444 443 345666665 4566665543333211100 0000 12478888888898876543
No 88
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.02 E-value=1.3e-09 Score=111.18 Aligned_cols=102 Identities=19% Similarity=0.249 Sum_probs=79.0
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC--CCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l--p~~~~sFDlI~~~~~~l 119 (444)
..+||||||+|.++..++.+ .++|+|+++.++..+..+..+..-.++.+...|+..+ .+++++||.|+++. ..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF-Pd 202 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF-PV 202 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-CC
Confidence 37999999999999999874 7899999988776666544433334678888887654 47789999999876 36
Q ss_pred cccccH------HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 120 DWLQRD------GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 120 ~~~~d~------~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+|.... ..++.++.|+|+|||.+.+.+..
T Consensus 203 PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 203 PWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 664332 47999999999999999996543
No 89
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.01 E-value=5.8e-09 Score=99.19 Aligned_cols=130 Identities=19% Similarity=0.233 Sum_probs=78.8
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||||||+|.++..+++. .++++|+++.++..++........ .++.+...| ++..+++||+|+|... ++|.
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~-l~~~ 140 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV-LIHY 140 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch-hhcC
Confidence 48999999999999999875 466777666555444433322111 246666666 3444678999999885 5443
Q ss_pred c--cHHHHHHHHHhhcCCCeEEEEEcCCCC-----------CCChhh----HHHHHHHHHHHHhcCeEEEeeec
Q 013393 123 Q--RDGILLLELDRLLRPGGYFVYSSPEAY-----------AHDPEN----RRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 123 ~--d~~~~L~ei~rvLkPGG~lvis~p~~~-----------~~~~~~----~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+ +...+++++.+.+++++.+.+...... ...... ...-.++.+++++.||++.....
T Consensus 141 ~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 141 PQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred CHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 3 345788899888765555444221100 000000 00123677788888888776644
No 90
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.98 E-value=1.1e-09 Score=98.95 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=59.3
Q ss_pred EEEcCcccchHHHHHHHHHc---CCCcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 69 AMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 69 gvdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
|+|+|+.++..+..+..... ..++.+.+.|...+|+++++||+|+++. .+++.+|...++++++|+|||||.+++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~-~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY-GLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc-hhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 56666555544332221111 2357899999999999999999999988 5888899999999999999999999986
Q ss_pred cC
Q 013393 146 SP 147 (444)
Q Consensus 146 ~p 147 (444)
+.
T Consensus 81 d~ 82 (160)
T PLN02232 81 DF 82 (160)
T ss_pred EC
Confidence 53
No 91
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.98 E-value=3.5e-09 Score=100.22 Aligned_cols=93 Identities=13% Similarity=0.067 Sum_probs=66.0
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||||||+|.++..+++. .|+++|+++..+..+..+.......++.+...|......+.++||+|++... .+
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~-~~ 156 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAA-GP 156 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCC-cc
Confidence 38999999999999887752 6788888776555444333222223578888887665555678999998763 33
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
. ....+.+.|||||++++.
T Consensus 157 ~------~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 157 D------IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred c------chHHHHHhhCCCcEEEEE
Confidence 2 234677789999999984
No 92
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=2.1e-09 Score=105.16 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=90.1
Q ss_pred cccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCC
Q 013393 16 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP 91 (444)
Q Consensus 16 ~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~ 91 (444)
..+.+.+.=.+.+.+.++.. .++ +|||+|||.|.++..+++. .++-+|++...+.-++.+.+.....+
T Consensus 138 FS~~~lD~GS~lLl~~l~~~-----~~~---~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~ 209 (300)
T COG2813 138 FSRDKLDKGSRLLLETLPPD-----LGG---KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN 209 (300)
T ss_pred CcCCCcChHHHHHHHhCCcc-----CCC---cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc
Confidence 33444455566667776642 122 7999999999999999984 45556666555544443333332233
Q ss_pred cEEEEecCccCCCCCCCccEEEecccccccccc-H----HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHH
Q 013393 92 STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR-D----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDL 166 (444)
Q Consensus 92 ~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d-~----~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l 166 (444)
..+...+ ...+..+ +||+|+|+- -+|--.+ . .+++.+..+.|++||.|.+.......+.+.-.+.|..++.+
T Consensus 210 ~~v~~s~-~~~~v~~-kfd~IisNP-Pfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg~v~~l 286 (300)
T COG2813 210 TEVWASN-LYEPVEG-KFDLIISNP-PFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFGNVEVL 286 (300)
T ss_pred cEEEEec-ccccccc-cccEEEeCC-CccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcCCEEEE
Confidence 2333333 2333333 899999986 3443111 1 37999999999999999998765444433333344444555
Q ss_pred HHhcCeEEEe
Q 013393 167 LKSMCWKIVS 176 (444)
Q Consensus 167 ~~~~gf~~v~ 176 (444)
++..||++..
T Consensus 287 a~~~gf~Vl~ 296 (300)
T COG2813 287 AKNGGFKVLR 296 (300)
T ss_pred EeCCCEEEEE
Confidence 5555555543
No 93
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.97 E-value=3e-09 Score=101.99 Aligned_cols=124 Identities=20% Similarity=0.252 Sum_probs=86.3
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCC--CCCCCccEEEeccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLP--YPSRSFELAHCSRC 117 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp--~~~~sFDlI~~~~~ 117 (444)
.++|||+|||+|..+..++++ .++++++.+.+...++.+.+... ..++.+...|...+. ....+||+|+|+--
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 458999999999999999885 56677666655544444443322 335677888877654 33457999999731
Q ss_pred cc---------------cc--cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 118 RI---------------DW--LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 118 ~l---------------~~--~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
.. +| .-+.+.+++.+.++|||||++.+..++ ....++.+++++.+|.....
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---------erl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---------ERLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---------HHHHHHHHHHHhcCCCceEE
Confidence 00 00 123457899999999999999997654 33557788899888866544
No 94
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.95 E-value=3.3e-09 Score=100.82 Aligned_cols=98 Identities=15% Similarity=0.049 Sum_probs=67.5
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHH------------HcCCCcEEEEecCccCCCC-CCCccE
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFAL------------ERGIPSTLGVLGTKRLPYP-SRSFEL 111 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~------------e~~~~~~~~~~d~~~lp~~-~~sFDl 111 (444)
+|||+|||.|..+.+|+++ .|+|+|+++..+..++.+... ....++.+.+.|+..++.. ...||+
T Consensus 40 rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~ 119 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDA 119 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeE
Confidence 8999999999999999986 677777777655443211100 0123466778887776532 358999
Q ss_pred EEeccccccccc-cHHHHHHHHHhhcCCCeEEEE
Q 013393 112 AHCSRCRIDWLQ-RDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 112 I~~~~~~l~~~~-d~~~~L~ei~rvLkPGG~lvi 144 (444)
|+-+.+..+..+ ....++..+.++|+|||++++
T Consensus 120 v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 120 VYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 998775333322 235899999999999996444
No 95
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.93 E-value=7.6e-09 Score=106.22 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=82.6
Q ss_pred eEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC-CCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~-~~sFDlI~~~~~~l~~ 121 (444)
+|||+|||+|.++..++. ..++++|+++.++..++.+ ++..+.++.+...|.....++ .++||+|+|+.-.+..
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN-a~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~ 332 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN-AADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIEN 332 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCc
Confidence 799999999999988875 3578888887766555533 334456778888886543332 4579999997421110
Q ss_pred c--------------------cc----HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 122 L--------------------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 ~--------------------~d----~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
. ++ ...++.++.+.|+|||++++.... .+-..+.+++++.||..+..
T Consensus 333 ~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---------~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 333 GDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---------DQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred chhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---------cHHHHHHHHHHHCCCcEEEE
Confidence 0 01 235677778899999999884322 23457888899899976544
No 96
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.92 E-value=1.2e-08 Score=96.54 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=66.1
Q ss_pred CeEEEECCCcchHHHHHhhC--C---ceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--D---IIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~---V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++. . |+++|+++..+..+..+. .+.+ .++.+...|........++||+|++..+ .
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~-~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~-~ 156 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRL-RKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA-G 156 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCeEEEECCcccCCcccCCCCEEEEcCC-c
Confidence 38999999999999988863 2 888888876655444333 3333 3577777786654434568999998763 3
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.. +...+.+.|+|||++++..
T Consensus 157 ~~------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 157 PK------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cc------ccHHHHHhcCcCcEEEEEE
Confidence 32 3456788999999999853
No 97
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.91 E-value=6.5e-09 Score=83.85 Aligned_cols=98 Identities=23% Similarity=0.349 Sum_probs=68.7
Q ss_pred eEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCC-CCCCccEEEeccccccc-
Q 013393 47 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY-PSRSFELAHCSRCRIDW- 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~-~~~sFDlI~~~~~~l~~- 121 (444)
+|||+|||+|.++..+++ ..++++|+++..+..+..........+..+...|...... ..++||+|+++.+ +++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~-~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP-LHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc-eeeh
Confidence 489999999999988887 2566666655433222211111123356666777666543 4578999999984 665
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEE
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
......+++.+.+.|+|||+++++
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 677789999999999999999985
No 98
>PLN03075 nicotianamine synthase; Provisional
Probab=98.89 E-value=6.4e-09 Score=102.46 Aligned_cols=102 Identities=10% Similarity=0.140 Sum_probs=72.7
Q ss_pred CCCeEEEECCCcchHHHH-Hhh-----CCceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCccCCCCCCCccEEEec
Q 013393 44 NIRNVLDVGCGVASFGAY-LLS-----HDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCS 115 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~-La~-----~~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~lp~~~~sFDlI~~~ 115 (444)
.+++|||||||.|.++.. ++. ..++|+|+++..+..++....... ...+.|...|..+.+...+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 456899999998744333 332 247788877766655553332222 235889888876654334789999999
Q ss_pred ccccccc-ccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 116 RCRIDWL-QRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 116 ~~~l~~~-~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+++++. ++..++++++.+.|+|||++++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 556663 788899999999999999999965
No 99
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.88 E-value=2e-09 Score=91.25 Aligned_cols=101 Identities=25% Similarity=0.374 Sum_probs=69.0
Q ss_pred eEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCC--CCCCCccEEEecccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLP--YPSRSFELAHCSRCRID 120 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp--~~~~sFDlI~~~~~~l~ 120 (444)
+|||+|||+|.++..+++. .++++|+++..+..+..++.... ..++.+...|....+ +++++||+|+++.-...
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~ 82 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGP 82 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTS
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCcc
Confidence 7999999999999888763 56777776654433332222211 235788888877664 67899999999753222
Q ss_pred cc-------ccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 121 WL-------QRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 121 ~~-------~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
.. .....+++++.++|||||.+++..|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 83 RSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp BTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 11 1235889999999999999998654
No 100
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.87 E-value=6.4e-08 Score=90.26 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=67.2
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-CCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++ ..++++|+++..+..++.+..+....++.+...|... ++.....+|.++...
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~---- 117 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG---- 117 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC----
Confidence 3899999999999988874 3688888888766555533332222356777666543 222223467765422
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
..+...+++++.++|+|||++++..+.
T Consensus 118 -~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 -GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred -CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 245678999999999999999997654
No 101
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.87 E-value=1.5e-08 Score=101.03 Aligned_cols=103 Identities=16% Similarity=0.248 Sum_probs=66.7
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCcc-CCCCCCC---ccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKR-LPYPSRS---FELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~-lp~~~~s---FDlI~~~ 115 (444)
.+|||+|||+|..+..|+++ .++++|+|+.++..++.+..... +.++....+|+.+ ++++... .+++++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 37999999999999888764 46777777666655554433322 3445566788665 4444322 2333332
Q ss_pred cccccccc--cHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 116 RCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 116 ~~~l~~~~--d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
...+++.+ +...+|++++++|+|||.|++....
T Consensus 145 gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 145 GSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 22355433 3347999999999999999986543
No 102
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.87 E-value=2e-08 Score=98.23 Aligned_cols=122 Identities=20% Similarity=0.247 Sum_probs=79.6
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc-
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID- 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~- 120 (444)
.+|||+|||+|.++..++.. .++++|+++..+..++.+.......++.+...|... ++++++||+|+|+.-.+.
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~ 188 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPE 188 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCc
Confidence 47999999999999988763 577787776655444433321123456777777533 233578999998631110
Q ss_pred ------------c------------cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEe
Q 013393 121 ------------W------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 121 ------------~------------~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~ 176 (444)
+ ......++.++.++|+|||++++.... ..-..+.+++++.||..+.
T Consensus 189 ~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---------~~~~~~~~~l~~~gf~~v~ 259 (275)
T PRK09328 189 ADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---------DQGEAVRALLAAAGFADVE 259 (275)
T ss_pred chhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---------hHHHHHHHHHHhCCCceeE
Confidence 0 012346888899999999999984321 1234577788888986444
Q ss_pred e
Q 013393 177 K 177 (444)
Q Consensus 177 ~ 177 (444)
.
T Consensus 260 ~ 260 (275)
T PRK09328 260 T 260 (275)
T ss_pred E
Confidence 3
No 103
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.86 E-value=8.4e-09 Score=95.79 Aligned_cols=111 Identities=18% Similarity=0.277 Sum_probs=73.4
Q ss_pred CeEEEECCCcchHHHHHhhC-CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 124 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d 124 (444)
-.|.|+|||.+.++..+.+. .|.-.|+.+. +-.+..+|+...|.++++.|++++..+ +.. .|
T Consensus 74 ~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~VfcLS-LMG-Tn 136 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVFCLS-LMG-TN 136 (219)
T ss_dssp S-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEEES----S-S-
T ss_pred EEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEEEhh-hhC-CC
Confidence 37999999999999877643 5777777653 224678999999999999999999875 433 78
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 125 DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 125 ~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+..++.|+.|+|||||.|.|.+... +. ..-+.+.+.+++.||++.....
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~S--Rf----~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKS--RF----ENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGG--G-----S-HHHHHHHHHCTTEEEEEEE-
T ss_pred cHHHHHHHHheeccCcEEEEEEecc--cC----cCHHHHHHHHHHCCCeEEeccc
Confidence 9999999999999999999965331 11 1235778889999999887654
No 104
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.85 E-value=2.2e-08 Score=90.59 Aligned_cols=123 Identities=21% Similarity=0.292 Sum_probs=84.2
Q ss_pred CCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHH----HcCCC--cEEEEecCccCCCCCCCccEEEeccc-
Q 013393 45 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL----ERGIP--STLGVLGTKRLPYPSRSFELAHCSRC- 117 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~----e~~~~--~~~~~~d~~~lp~~~~sFDlI~~~~~- 117 (444)
..+|||+|||.|.+...|++.+..+ ++.++|.++.++..|+ ..+.+ ++|.+.|+..-.+.++.||+|+=-..
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 3379999999999999999864322 2455555555555543 33444 78999998776677788999885321
Q ss_pred -ccccccc-----HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 118 -RIDWLQR-----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 118 -~l~~~~d-----~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
++...++ ...++..+.+.|+|||.|+|+.-++ ..+++.+..+..+|+....
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~---------T~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF---------TKDELVEEFENFNFEYLST 203 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc---------cHHHHHHHHhcCCeEEEEe
Confidence 1111111 2367889999999999999975543 2467888888888876544
No 105
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.84 E-value=1.6e-08 Score=93.79 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=63.5
Q ss_pred eEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--------CCCCCccEEE
Q 013393 47 NVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELAH 113 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--------~~~~sFDlI~ 113 (444)
+|||+|||+|.++..+++. .++++|+++.. ...++.+...|..+.+ +++++||+|+
T Consensus 35 ~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~ 103 (188)
T TIGR00438 35 TVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM 103 (188)
T ss_pred EEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence 8999999999998887653 48889888742 1234566666765432 4567899999
Q ss_pred ecccc---cccc-------ccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 114 CSRCR---IDWL-------QRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 114 ~~~~~---l~~~-------~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
|..+. ..|. .+...++.++.++|+|||++++..
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 86421 1111 123578999999999999999964
No 106
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.83 E-value=4.2e-08 Score=97.03 Aligned_cols=120 Identities=15% Similarity=0.173 Sum_probs=80.0
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccc-
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR- 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~- 118 (444)
.+|||+|||+|.++..+++. .++++|+++..+..++.+ ++..+. ++.+...|... ++++++||+|+|+--.
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n-~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 47999999999999999863 578888877666555433 333343 46777777533 2345689999996200
Q ss_pred -----------cccc------------ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 119 -----------IDWL------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 119 -----------l~~~------------~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
+++. .....++.++.++|+|||++++.... .+..+.+++.+.+|.-.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----------~~~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----------SMEALEEAYPDVPFTWL 270 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----------CHHHHHHHHHhCCCcee
Confidence 0110 11246789999999999999985432 12467778887776554
Q ss_pred ee
Q 013393 176 SK 177 (444)
Q Consensus 176 ~~ 177 (444)
..
T Consensus 271 ~~ 272 (284)
T TIGR03533 271 EF 272 (284)
T ss_pred ee
Confidence 43
No 107
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.80 E-value=3.9e-08 Score=97.24 Aligned_cols=121 Identities=15% Similarity=0.263 Sum_probs=79.0
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccc--
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC-- 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~-- 117 (444)
.+|||+|||+|.++..++.. .++++|+++..+..+..+ ++..+. ++.+...|... ++++++||+|+|+.-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n-~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN-AEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 47999999999999988863 578888777655444433 333343 26777777543 344458999999621
Q ss_pred ----------cccccc------------cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHH-hcCeEE
Q 013393 118 ----------RIDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK-SMCWKI 174 (444)
Q Consensus 118 ----------~l~~~~------------d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~-~~gf~~ 174 (444)
...|.+ ....++.++.+.|+|||++++.... .+-..+.+++. ..+|..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~---------~q~~~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN---------WQQKSLKELLRIKFTWYD 264 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc---------cHHHHHHHHHHhcCCCce
Confidence 111111 2347889999999999999985433 12335666666 467755
Q ss_pred Eee
Q 013393 175 VSK 177 (444)
Q Consensus 175 v~~ 177 (444)
+..
T Consensus 265 ~~~ 267 (284)
T TIGR00536 265 VEN 267 (284)
T ss_pred eEE
Confidence 443
No 108
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.80 E-value=2.6e-08 Score=92.80 Aligned_cols=156 Identities=21% Similarity=0.307 Sum_probs=93.3
Q ss_pred ccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHH---H-HHHHcCCC-
Q 013393 17 FHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQI---Q-FALERGIP- 91 (444)
Q Consensus 17 f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i---~-~a~e~~~~- 91 (444)
|...+++..+-|.+.|... ++..+. +|||||||||..+.+++++- -.+..-|.|..+... + ...+.+.+
T Consensus 3 ~spAaeRNk~pIl~vL~~~---l~~~~~--~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~N 76 (204)
T PF06080_consen 3 FSPAAERNKDPILEVLKQY---LPDSGT--RVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPN 76 (204)
T ss_pred CChhhhhCHhHHHHHHHHH---hCccCc--eEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcc
Confidence 3444555555555555432 222231 59999999999999998852 123445555544332 1 22222221
Q ss_pred c-EEEEecCcc--CCC------CCCCccEEEeccccccccc--cHHHHHHHHHhhcCCCeEEEEEcCCCCC--CCh----
Q 013393 92 S-TLGVLGTKR--LPY------PSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYA--HDP---- 154 (444)
Q Consensus 92 ~-~~~~~d~~~--lp~------~~~sFDlI~~~~~~l~~~~--d~~~~L~ei~rvLkPGG~lvis~p~~~~--~~~---- 154 (444)
+ .-...|+.. .+. ..++||+|+|.+ ++|..+ .-+.+|+.+.++|+|||.|++-.|..+. .+.
T Consensus 77 v~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N-~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~ 155 (204)
T PF06080_consen 77 VRPPLALDVSAPPWPWELPAPLSPESFDAIFCIN-MLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNA 155 (204)
T ss_pred cCCCeEeecCCCCCccccccccCCCCcceeeehh-HHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHH
Confidence 1 111334332 232 246899999999 577643 2248999999999999999998776431 111
Q ss_pred ------------hhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 155 ------------ENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 155 ------------~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
.+.+..+.+.+++++.|++......
T Consensus 156 ~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~ 192 (204)
T PF06080_consen 156 AFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDID 192 (204)
T ss_pred HHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCcccc
Confidence 1223345888999999998766543
No 109
>PRK00811 spermidine synthase; Provisional
Probab=98.80 E-value=7.3e-08 Score=95.27 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=71.9
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH-----cCCCcEEEEecCcc-CCCCCCCccEEE
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKR-LPYPSRSFELAH 113 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e-----~~~~~~~~~~d~~~-lp~~~~sFDlI~ 113 (444)
++++||+||||+|..+..+++. .|+++|+++..+..+...+... ...++.+...|... +...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4568999999999999999875 4677777665554443322211 13456777788654 233467899999
Q ss_pred ecccccccccc----HHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 114 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 114 ~~~~~l~~~~d----~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
+..+ -++.+. ...+++++.+.|+|||.+++....++
T Consensus 156 ~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~ 195 (283)
T PRK00811 156 VDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPF 195 (283)
T ss_pred ECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcc
Confidence 8642 333222 25789999999999999998765543
No 110
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.79 E-value=5.7e-08 Score=91.71 Aligned_cols=95 Identities=14% Similarity=0.035 Sum_probs=63.8
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||+|||+|.++..+++. .++++|+++..+..+..++.+..-.++.+...|......+.++||+|++..+ .++
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~-~~~-- 156 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA-APE-- 156 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC-chh--
Confidence 38999999999988877663 5777777765554444333322222467777775432223478999998763 333
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
+..++.+.|+|||.+++...
T Consensus 157 ----~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 157 ----IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ----hhHHHHHhcCCCcEEEEEEc
Confidence 34567899999999998643
No 111
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=3.2e-08 Score=103.35 Aligned_cols=104 Identities=22% Similarity=0.393 Sum_probs=72.3
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--CCCCCccEEEecc-cc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSR-CR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~~~~sFDlI~~~~-~~ 118 (444)
.+|||+|||+|..+.++++. .|+++|+++..+..++ +.+...+.++.+...|...++ ++.++||.|++.. |.
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 38999999999999888763 5778877776665544 233444666777788876654 3457899999532 11
Q ss_pred ----c------ccccc----------HHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 119 ----I------DWLQR----------DGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 119 ----l------~~~~d----------~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
+ .|... ...++.++.++|||||++++++-...
T Consensus 325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 1 11111 23689999999999999999876544
No 112
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.75 E-value=2.9e-08 Score=94.24 Aligned_cols=112 Identities=16% Similarity=0.263 Sum_probs=84.6
Q ss_pred CCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 124 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d 124 (444)
...|.|+|||.+.++.- ....|+.+|+.+. +-.+..+|+.+.|.++++.|++++..+ +. ..|
T Consensus 181 ~~vIaD~GCGEakiA~~-~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLS-LM-gtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS-ERHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLS-LM-GTN 242 (325)
T ss_pred ceEEEecccchhhhhhc-cccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHh-hh-ccc
Confidence 34799999999988751 1237888887653 345678999999999999999998664 33 478
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeecc
Q 013393 125 DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 125 ~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
...++.|++|+|+|||.+.|..... +..+ -..+.+.+..+||.+......
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~S--Rf~d----v~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKS--RFSD----VKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhh--hccc----HHHHHHHHHHcCCeeeehhhh
Confidence 9999999999999999999965331 1111 234778889999988776554
No 113
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.73 E-value=2.3e-07 Score=90.13 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=77.8
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-CCC-CCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPY-PSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp~-~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++. .++++|+++..+..++.+. ...+ ..+...|..+ ++. ..++||+|+++--.+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~-~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL-ADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 37999999999999988753 5778887776655444332 2223 4666677543 221 135799999874111
Q ss_pred c-------------cc--------cc----HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEE
Q 013393 120 D-------------WL--------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 174 (444)
Q Consensus 120 ~-------------~~--------~d----~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~ 174 (444)
. +- .+ ...++..+.++|||||++++.... .....+..++++.||+.
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---------~~~~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---------RQAPLAVEAFARAGLIA 235 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---------chHHHHHHHHHHCCCCc
Confidence 1 00 01 236777888999999999986432 22346788888888865
Q ss_pred Eee
Q 013393 175 VSK 177 (444)
Q Consensus 175 v~~ 177 (444)
...
T Consensus 236 ~~~ 238 (251)
T TIGR03704 236 RVA 238 (251)
T ss_pred eee
Confidence 443
No 114
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.72 E-value=2.9e-07 Score=84.24 Aligned_cols=121 Identities=17% Similarity=0.087 Sum_probs=83.4
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-CCCCCCCccEE
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELA 112 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp~~~~sFDlI 112 (444)
.+.+++ +++|||||||+.+..++. .+++++|-++..+.....+.++-...++.+...++.+ ++-.+ +||.|
T Consensus 31 ~~~~g~---~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~dai 106 (187)
T COG2242 31 RPRPGD---RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAI 106 (187)
T ss_pred CCCCCC---EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEE
Confidence 334454 899999999999999883 3688887776555444433333334566777776544 33222 79999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCe-EEE
Q 013393 113 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW-KIV 175 (444)
Q Consensus 113 ~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf-~~v 175 (444)
+.... .+.+.+|+.+...|||||++++.... .+......+.+++.|+ +++
T Consensus 107 FIGGg-----~~i~~ile~~~~~l~~ggrlV~nait--------lE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 107 FIGGG-----GNIEEILEAAWERLKPGGRLVANAIT--------LETLAKALEALEQLGGREIV 157 (187)
T ss_pred EECCC-----CCHHHHHHHHHHHcCcCCeEEEEeec--------HHHHHHHHHHHHHcCCceEE
Confidence 97663 56778999999999999999985433 2334456677888888 443
No 115
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.72 E-value=5.7e-08 Score=103.40 Aligned_cols=295 Identities=11% Similarity=0.121 Sum_probs=156.6
Q ss_pred CCeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccc
Q 013393 45 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
..+|||+|||+|.++..++. ..++++|+++..+..+..+ +...+. .+.+...|... ++++++||+|+|+.-.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N-~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSN-AIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHH-HHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 34899999999999988875 3688888887666555433 233333 45666666432 2345689999996311
Q ss_pred cc-------------cc------------ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeE
Q 013393 119 ID-------------WL------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 119 l~-------------~~------------~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~ 173 (444)
+. |- .....++.++.++|+|||.+++... ...-..+.+++++.||.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig---------~~q~~~v~~~~~~~g~~ 287 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG---------FKQEEAVTQIFLDHGYN 287 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC---------CchHHHHHHHHHhcCCC
Confidence 11 10 0123577888999999999998422 12345678888888886
Q ss_pred EEeeecceeEeeccCchhhHhhcCCCCCCCcccCCCCcchhhhhcccccccccccccccccCccccCCCCCCCCCCCCcc
Q 013393 174 IVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLE 253 (444)
Q Consensus 174 ~v~~~~~~~~w~k~l~~~c~~~~~~~~~p~lc~~~~~~~~awy~~l~~ci~~~p~~~~~~~~~~~~~wP~rL~~~p~~~~ 253 (444)
.+....+.. .. +.... -...++.+. -....|+ +|+
T Consensus 288 ~~~~~~D~~------g~-----------~R~v~-----------~~~~~~~rs---~~rr~g~-------~~~------- 322 (506)
T PRK01544 288 IESVYKDLQ------GH-----------SRVIL-----------ISPINLNRS---YARRIGK-------SLS------- 322 (506)
T ss_pred ceEEEecCC------CC-----------ceEEE-----------eccccCCcc---eeccCCC-------CCC-------
Confidence 543321100 00 00000 000001000 0000010 010
Q ss_pred ccCCChhHHHhhHhhHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccCC-CceEEEeccccCC-----CchhH
Q 013393 254 EVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-----ARLKI 327 (444)
Q Consensus 254 ~~g~~~~~f~~~~~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-----~~l~~ 327 (444)
..--..-..+|.. |.....+ +....-..++|+.+|.|+|.+.+... |- .|++=++-. ..+.-
T Consensus 323 -----~~q~~~~e~~~p~----~~i~~ek-lf~~~~p~~lEIG~G~G~~~~~~A~~~p~--~~~iGiE~~~~~~~~~~~~ 390 (506)
T PRK01544 323 -----GVQQNLLDNELPK----YLFSKEK-LVNEKRKVFLEIGFGMGEHFINQAKMNPD--ALFIGVEVYLNGVANVLKL 390 (506)
T ss_pred -----HHHHHHHHhhhhh----hCCCHHH-hCCCCCceEEEECCCchHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHH
Confidence 0000000001111 1000011 23345688999999999999999643 32 144444432 33445
Q ss_pred HhhccccccccccccCC----CCC-Ccccchhhcccccccc------ccCCCChhhhhhhhcccccCCcEEEEe-ccHHH
Q 013393 328 IYDRGLIGTVHDWCESF----STY-PRTYDLLHAWKVFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSI 395 (444)
Q Consensus 328 ~~~rg~~~~~~~~~~~~----~~y-~~~~dl~h~~~~~~~~------~~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~ 395 (444)
+.++||=.+. =.|..+ .-+ +.+.|-+|- .|.+- .++|=--...|-++-|+|+|||.+-++ |..+.
T Consensus 391 ~~~~~l~N~~-~~~~~~~~~~~~~~~~sv~~i~i--~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y 467 (506)
T PRK01544 391 AGEQNITNFL-LFPNNLDLILNDLPNNSLDGIYI--LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENY 467 (506)
T ss_pred HHHcCCCeEE-EEcCCHHHHHHhcCcccccEEEE--ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence 6677763221 122222 122 356666653 34422 245666678889999999999999775 66666
Q ss_pred HHHHHHHHhh-cccee
Q 013393 396 INYIRKFITA-LKWDG 410 (444)
Q Consensus 396 ~~~~~~~~~~-~~w~~ 410 (444)
.+.+...+.. -.|+.
T Consensus 468 ~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 468 FYEAIELIQQNGNFEI 483 (506)
T ss_pred HHHHHHHHHhCCCeEe
Confidence 6665555443 23443
No 116
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.72 E-value=1.2e-07 Score=94.65 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=77.5
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..++.. .++++|+++..+..++.+ ++..+. ++.+...|... ++++++||+|+|+.-.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n-~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 47999999999999998863 578888877666555533 333343 46777777543 23456899999972111
Q ss_pred ------------cccc------------cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 120 ------------DWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 120 ------------~~~~------------d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
++.+ ....+++++.+.|+|||++++..... ...+.+++.+.+|.-.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~----------~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS----------RVHLEEAYPDVPFTWL 282 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC----------HHHHHHHHhhCCCEEE
Confidence 1111 12477899999999999999853321 2346666776665433
No 117
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.71 E-value=1e-07 Score=99.71 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=80.5
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCC----CCCCCccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP----YPSRSFELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp----~~~~sFDlI~~~ 115 (444)
.+|||+|||+|..+.++++. .|+++|+++..+...+.+ ++..+. ++.+...|...++ +..++||.|++.
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN-AQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH-HHHcCCCeEEEEeCChhhcccccccccccCCEEEEe
Confidence 38999999999999888763 577887777665544433 333344 5677778877665 446789999962
Q ss_pred ----c-cccccccc----------------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-CeE
Q 013393 116 ----R-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWK 173 (444)
Q Consensus 116 ----~-~~l~~~~d----------------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~-gf~ 173 (444)
. ..+...++ ...+|.++.++|||||++++++-..+... . -..+..++++. +|+
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~E--n---e~~v~~~l~~~~~~~ 407 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAE--N---EAQIEQFLARHPDWK 407 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhh--H---HHHHHHHHHhCCCcE
Confidence 1 12222222 34789999999999999999875543221 1 23455555554 454
No 118
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=1.2e-08 Score=95.16 Aligned_cols=128 Identities=17% Similarity=0.264 Sum_probs=94.0
Q ss_pred eEEEECCCcchHHHHHhhCC---ceEEEcCcccchHHHHHHHHHc---CCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 47 NVLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~---V~gvdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.++|||||.|....++...+ ++-+|.| ..|++.++.. +......+.|-+.++|.+++||+|+++. .+|
T Consensus 75 ~a~diGcs~G~v~rhl~~e~vekli~~DtS-----~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-slH 148 (325)
T KOG2940|consen 75 TAFDIGCSLGAVKRHLRGEGVEKLIMMDTS-----YDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SLH 148 (325)
T ss_pred ceeecccchhhhhHHHHhcchhheeeeecc-----hHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhh-hhh
Confidence 79999999999999998864 3445554 4455555443 4445667888899999999999999998 599
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCC------------------CCh--hhHHHHHHHHHHHHhcCeEEEeeecc
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------------HDP--ENRRIWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~------------------~~~--~~~~~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
|..|.+.-+.++...|||+|.|+-+.-.... ..+ .....-+.+..++.++||.......+
T Consensus 149 W~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtD 228 (325)
T KOG2940|consen 149 WTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTD 228 (325)
T ss_pred hhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceeccc
Confidence 9999999999999999999999854211100 000 00112346788999999998766543
No 119
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.67 E-value=6.3e-08 Score=90.77 Aligned_cols=135 Identities=19% Similarity=0.272 Sum_probs=83.6
Q ss_pred CCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHc-----CCCcEEEEecCccCCCCCCCccEEEeccc
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~lp~~~~sFDlI~~~~~ 117 (444)
....++||.|||.|..+..++-...-.+|+. +..+..++.|++. ..-..+...+.+++..++++||+|+|--|
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 3456899999999999998876544445554 3445555666643 22245667777777655679999999997
Q ss_pred cccccccHH--HHHHHHHhhcCCCeEEEEEcCC---CC-CCChhh---HHHHHHHHHHHHhcCeEEEeeecc
Q 013393 118 RIDWLQRDG--ILLLELDRLLRPGGYFVYSSPE---AY-AHDPEN---RRIWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 118 ~l~~~~d~~--~~L~ei~rvLkPGG~lvis~p~---~~-~~~~~~---~~~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
+.| +.|.+ .+|+++...|+|||.+++-+.- .. ..++++ .+.-..+.++++++|++++..+.+
T Consensus 132 lgh-LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 132 LGH-LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGG-S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred hcc-CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 555 45544 8999999999999999984321 11 111111 234568899999999999987654
No 120
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.66 E-value=5.2e-08 Score=95.33 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=69.6
Q ss_pred eEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEec----c
Q 013393 47 NVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCS----R 116 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~----~ 116 (444)
+|||+|||+|..+..+++. .|+++|+++..+.....+.. ..+. ++.+...|...++...++||.|++. .
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~-~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANIN-RCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSG 152 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH-HcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCC
Confidence 8999999999999888762 57788777766644443333 3343 5667777776665555679999962 1
Q ss_pred -ccccccc----------------cHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 117 -CRIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 117 -~~l~~~~----------------d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
.++...+ ....+|.++.+.|||||++++++-..
T Consensus 153 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 153 EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 0111111 12368999999999999999987554
No 121
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.66 E-value=1.1e-07 Score=99.95 Aligned_cols=103 Identities=19% Similarity=0.256 Sum_probs=71.1
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEe----c
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC----S 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~----~ 115 (444)
.+|||+|||+|..+.++++ ..|+++|+++..+..++. .++..+. ++.+...|...++ ++++||+|++ +
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~-~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRS-HASALGITIIETIEGDARSFS-PEEQPDAILLDAPCT 329 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-HHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCC
Confidence 3899999999998887765 257888888776655443 3333454 4677777876665 4578999995 2
Q ss_pred cc-cc------cccc----------cHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 116 RC-RI------DWLQ----------RDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 116 ~~-~l------~~~~----------d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
.. .+ .|.. ....+|.++.+.|||||++++++-...
T Consensus 330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 21 11 0111 123689999999999999999876643
No 122
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.66 E-value=9.5e-08 Score=99.81 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=69.6
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEE--EEecCccCCC--CCCCccEEEe---
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKRLPY--PSRSFELAHC--- 114 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~--~~~d~~~lp~--~~~sFDlI~~--- 114 (444)
.+|||+|||+|..+.++++ ..++++|+++..+..... .++..+..+.+ ...|....++ +.++||.|++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~-n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaP 318 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE-NLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAP 318 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeccccccccccccccccCEEEEcCC
Confidence 3899999999999988876 357788777766544443 33334555444 3344443333 4678999995
Q ss_pred -cc-cccccccc----------------HHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 115 -SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 115 -~~-~~l~~~~d----------------~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
+. .+++..++ ...+|.++.++|||||++++++-...
T Consensus 319 cSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 319 CSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred CCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 22 22332222 24799999999999999999876654
No 123
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.64 E-value=1.7e-07 Score=87.66 Aligned_cols=121 Identities=17% Similarity=0.246 Sum_probs=84.1
Q ss_pred eEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-CC--CCCCCccEEEeccccc
Q 013393 47 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP--YPSRSFELAHCSRCRI 119 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp--~~~~sFDlI~~~~~~l 119 (444)
.+||||||.|.+...+|. .+++|+|+...-+..+..+..+....++.+...|+.. ++ ++++++|.|+..+. -
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-D 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-D 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-C
Confidence 799999999999999987 4789999998777666655555556678888888666 32 45789999997662 4
Q ss_pred cccccH--------HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHh--cCeEEEe
Q 013393 120 DWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS--MCWKIVS 176 (444)
Q Consensus 120 ~~~~d~--------~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~--~gf~~v~ 176 (444)
+|.... ..++..+.++|+|||.+.+.+.. ...+..+.+.++. .+|+...
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--------~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--------EEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---------HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--------HHHHHHHHHHHHhcCcCeEEcc
Confidence 443211 37999999999999999996443 3445666666666 3777664
No 124
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.64 E-value=1.6e-07 Score=89.49 Aligned_cols=101 Identities=16% Similarity=0.046 Sum_probs=74.0
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHH------------HHHcCCCcEEEEecCccCCCC---CCC
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQF------------ALERGIPSTLGVLGTKRLPYP---SRS 108 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~------------a~e~~~~~~~~~~d~~~lp~~---~~s 108 (444)
.+||+.|||.|.-+.+|++. .|+|+|+|+..+.....+. ...++.++.+.++|+..++.. .+.
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~ 124 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPV 124 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCC
Confidence 38999999999999999986 6888888877665432210 112355788999998888642 267
Q ss_pred ccEEEeccccccccccH-HHHHHHHHhhcCCCeEEEEEc
Q 013393 109 FELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 109 FDlI~~~~~~l~~~~d~-~~~L~ei~rvLkPGG~lvis~ 146 (444)
||+|+=..++.+..++. .++.+.+.++|+|||.+++..
T Consensus 125 fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 125 FDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 99998766544443333 489999999999999988743
No 125
>PHA03411 putative methyltransferase; Provisional
Probab=98.62 E-value=2.6e-07 Score=90.02 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=84.2
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..++.+ .++++|+++ .+++.++++..++.+...|+..+.. +++||+|+++....+.
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp-----~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNP-----EFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKI 139 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCcccc
Confidence 37999999999998888663 466666555 5556666655567888888776653 4689999997643332
Q ss_pred ccc-------------------HHHHHHHHHhhcCCCeEEEEE--cCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec-
Q 013393 122 LQR-------------------DGILLLELDRLLRPGGYFVYS--SPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD- 179 (444)
Q Consensus 122 ~~d-------------------~~~~L~ei~rvLkPGG~lvis--~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~- 179 (444)
... ...++.....+|+|+|.+.+. ..+.|... . .-.+...++++.||....--+
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~s-l---~~~~y~~~l~~~g~~~~~~~~~ 215 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGT-M---KSNKYLKWSKQTGLVTYAGCGI 215 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccccccc-C---CHHHHHHHHHhcCcEecCCCCc
Confidence 110 245677888999999977664 22222111 1 124678899999997654433
Q ss_pred ceeEe
Q 013393 180 QTVIW 184 (444)
Q Consensus 180 ~~~~w 184 (444)
++.+|
T Consensus 216 ~~~~~ 220 (279)
T PHA03411 216 DTSIY 220 (279)
T ss_pred cccee
Confidence 33443
No 126
>PRK04457 spermidine synthase; Provisional
Probab=98.60 E-value=1.6e-07 Score=91.84 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=65.8
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc------CCCcEEEEecCcc-CCCCCCCccEE
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKR-LPYPSRSFELA 112 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~------~~~~~~~~~d~~~-lp~~~~sFDlI 112 (444)
.+++|||||||+|.++..+++. .++++|+++. .++.|++. ..++.+...|... +.-..++||+|
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~-----vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQ-----VIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHH-----HHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEE
Confidence 3458999999999999988763 4566666554 44454443 2456777777543 22224689999
Q ss_pred Eeccccccccc---cHHHHHHHHHhhcCCCeEEEEEc
Q 013393 113 HCSRCRIDWLQ---RDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 113 ~~~~~~l~~~~---d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
++....-...+ ....+++++.+.|+|||.+++..
T Consensus 141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 97531111111 12589999999999999999853
No 127
>PRK01581 speE spermidine synthase; Validated
Probab=98.59 E-value=3.8e-07 Score=92.10 Aligned_cols=127 Identities=16% Similarity=0.104 Sum_probs=83.5
Q ss_pred CCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH------------cCCCcEEEEecCcc-CCCC
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE------------RGIPSTLGVLGTKR-LPYP 105 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e------------~~~~~~~~~~d~~~-lp~~ 105 (444)
.++++||++|||+|..++.+++. .|+.+|++ +++++.|++ ...++.+.+.|... +.-.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEID-----peVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLD-----GSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC-----HHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc
Confidence 34568999999999998888874 35555554 555566554 13466777788655 3334
Q ss_pred CCCccEEEecccccccc-----ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 106 SRSFELAHCSRCRIDWL-----QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~-----~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+++||+|++... -+.. ..-..+++.+.+.|+|||.+++...++.. ....+..+.+.+++.++.+.....
T Consensus 224 ~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~----~~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 224 SSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPAD----APLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred CCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhh----hHHHHHHHHHHHHHhCCceEEEEE
Confidence 578999998641 1110 11147899999999999999987654421 122334467778888886665443
No 128
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.58 E-value=1.8e-07 Score=93.92 Aligned_cols=93 Identities=12% Similarity=0.062 Sum_probs=63.9
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++. .|+++|+++..+..++.+. +..+. ++.+...|....+...++||+|++... .
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l-~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g-~ 159 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-RRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG-V 159 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEeCChhhcccccCCccEEEECCc-h
Confidence 38999999999999998862 3778888776554444322 23333 466777776555444567999998753 3
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+. ....+.+.|+|||.+++..
T Consensus 160 ~~------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 160 DE------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred HH------hHHHHHHhcCCCCEEEEEe
Confidence 22 2335678999999998854
No 129
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.57 E-value=1.1e-07 Score=99.40 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=71.8
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCC-CCCCCccEEEec---
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCS--- 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp-~~~~sFDlI~~~--- 115 (444)
.+|||+|||+|..+.++++ ..|+++|+++..+.....+ +...+. ++.+...|...++ +.+++||.|++.
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n-~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC 317 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH-AKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPC 317 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCC
Confidence 3899999999998888775 2578888877666544433 333344 4577788877765 446789999962
Q ss_pred -c-ccccccc----------------cHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 116 -R-CRIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 116 -~-~~l~~~~----------------d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
. ..+...+ ...++|.++.+.|||||++++++-...
T Consensus 318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 1 1111111 124679999999999999999876643
No 130
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=3.8e-07 Score=89.95 Aligned_cols=119 Identities=20% Similarity=0.276 Sum_probs=75.7
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
+|||+|||+|..+..++.. .|+++|+++..+.-+. +.|...+. +..+...|. --+. .++||+|+||-=.+..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~~dl-f~~~-~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQSDL-FEPL-RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEeeec-cccc-CCceeEEEeCCCCCCC
Confidence 6999999999999999873 6778877776554444 33444453 222333321 1122 3489999997322221
Q ss_pred c------------------------ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-eEEEe
Q 013393 122 L------------------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 176 (444)
Q Consensus 122 ~------------------------~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~g-f~~v~ 176 (444)
. .-...++.++.+.|+|||.+++..-. ..-..+.+++.+.| |..+.
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~---------~q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL---------TQGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC---------CcHHHHHHHHHhcCCceEEE
Confidence 1 01126888899999999999984321 23457888999999 55443
Q ss_pred e
Q 013393 177 K 177 (444)
Q Consensus 177 ~ 177 (444)
.
T Consensus 261 ~ 261 (280)
T COG2890 261 T 261 (280)
T ss_pred E
Confidence 3
No 131
>PLN02366 spermidine synthase
Probab=98.57 E-value=9.4e-07 Score=88.24 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=68.9
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH----cCCCcEEEEecCccC-C-CCCCCccEEE
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRL-P-YPSRSFELAH 113 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e----~~~~~~~~~~d~~~l-p-~~~~sFDlI~ 113 (444)
++++||+||||.|..+..+++. +|+.+|+++..+..+...+... ...++.+...|.... . .++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 3568999999999999999875 3455555553332222222211 124577777775432 1 2356899999
Q ss_pred ecccccccccc----HHHHHHHHHhhcCCCeEEEEEcCCCCC
Q 013393 114 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYA 151 (444)
Q Consensus 114 ~~~~~l~~~~d----~~~~L~ei~rvLkPGG~lvis~p~~~~ 151 (444)
+-.. -++.+. ...+++.+.+.|+|||.++....+.+.
T Consensus 171 ~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~ 211 (308)
T PLN02366 171 VDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWL 211 (308)
T ss_pred EcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCccc
Confidence 8542 322221 247899999999999999987665543
No 132
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.57 E-value=1.1e-06 Score=86.41 Aligned_cols=105 Identities=15% Similarity=0.116 Sum_probs=67.3
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc----CCCcEEEEecCcc-CCCCCCCccEEEe
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKR-LPYPSRSFELAHC 114 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~----~~~~~~~~~d~~~-lp~~~~sFDlI~~ 114 (444)
++++||+||||+|.++..+++. .++++|+++..+..+...+.... ..++.+...|... +...+++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3458999999999999888764 46667666654433332222211 2345566666433 2222578999998
Q ss_pred cccccccccc----HHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 115 SRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 115 ~~~~l~~~~d----~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
... .+.... ...+++.+.+.|+|||.+++....+
T Consensus 152 D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 152 DST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred eCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 652 222121 3578999999999999999975543
No 133
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.56 E-value=2.1e-07 Score=91.00 Aligned_cols=103 Identities=19% Similarity=0.382 Sum_probs=72.1
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHH--c----CCCcEEEEecCc------cCCCCCCCcc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE--R----GIPSTLGVLGTK------RLPYPSRSFE 110 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e--~----~~~~~~~~~d~~------~lp~~~~sFD 110 (444)
..+||+|||-|.-..-.-++ .++|+||+...+.+++.+.-.- + --++.|..+|.. .+++++.+||
T Consensus 119 ~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fD 198 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFD 198 (389)
T ss_pred cccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcc
Confidence 47999999999755544443 6788888876665555432211 1 124677777732 2456666799
Q ss_pred EEEecccccccc----ccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 111 LAHCSRCRIDWL----QRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 111 lI~~~~~~l~~~----~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
+|-|-+| +||. +....+|.++.+.|||||+|+-+.|..
T Consensus 199 ivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 199 IVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred eeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 9999885 7773 233479999999999999999988773
No 134
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.55 E-value=1.8e-07 Score=87.42 Aligned_cols=134 Identities=19% Similarity=0.274 Sum_probs=69.1
Q ss_pred ccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcc----hHHHHHhh--C--CceEEEcCcccchHHHHHHHH
Q 013393 15 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVA----SFGAYLLS--H--DIIAMSLAPNDVHENQIQFAL 86 (444)
Q Consensus 15 t~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG----~~a~~La~--~--~V~gvdis~~dis~a~i~~a~ 86 (444)
|.|.+....+-.....+++.......++ +.-+|+-.||+|| ++++.+.+ . .-.-+.|.+.|+++..++.|+
T Consensus 3 T~FFRd~~~f~~l~~~vlp~~~~~~~~~-~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar 81 (196)
T PF01739_consen 3 TYFFRDPEQFEALRDEVLPPLLARARPG-RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR 81 (196)
T ss_dssp --TTTTTTHHHHHHHHHH-------CS--S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhhccccCCC-CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH
Confidence 3455555555444445553222222223 3347999999999 56666655 1 111245555566666666665
Q ss_pred Hc--------C-------------------------CCcEEEEecCccCCCCCCCccEEEeccccccccccH-HHHHHHH
Q 013393 87 ER--------G-------------------------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD-GILLLEL 132 (444)
Q Consensus 87 e~--------~-------------------------~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~-~~~L~ei 132 (444)
+. + ..+.|...+....+.+.+.||+|+|.+.++.+.+.. .+++..+
T Consensus 82 ~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l 161 (196)
T PF01739_consen 82 AGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRL 161 (196)
T ss_dssp HTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHH
T ss_pred hCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHH
Confidence 42 1 125666777655333457899999999766653322 4899999
Q ss_pred HhhcCCCeEEEEEcCCC
Q 013393 133 DRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 133 ~rvLkPGG~lvis~p~~ 149 (444)
++.|+|||+|++.....
T Consensus 162 ~~~L~pgG~L~lG~sE~ 178 (196)
T PF01739_consen 162 HRSLKPGGYLFLGHSES 178 (196)
T ss_dssp GGGEEEEEEEEE-TT--
T ss_pred HHHcCCCCEEEEecCcc
Confidence 99999999999965443
No 135
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=4.7e-07 Score=95.09 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=69.7
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCC--CCCCCccEEEecc-
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR- 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp--~~~~sFDlI~~~~- 116 (444)
.+|||+|||+|..+..+++. .++++|+++..+..++. .+...+. ++.+...|...++ ++ ++||+|++..
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~-n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE-NAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCC
Confidence 48999999999999888763 57888877766544443 3333343 4677778876653 33 7899999742
Q ss_pred c----cccccc---------c-------HHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 117 C----RIDWLQ---------R-------DGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 117 ~----~l~~~~---------d-------~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
| .+...+ + ...++.++.++|||||.+++++-...
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 1 111111 1 13589999999999999998775543
No 136
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.53 E-value=4.3e-07 Score=82.73 Aligned_cols=93 Identities=15% Similarity=0.113 Sum_probs=63.2
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 124 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d 124 (444)
+|||+|||+|.++..++++ .++++|+++..+...+.+... ..++.+...|+.++++++.+||.|+++. -.+.
T Consensus 16 ~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py~~--- 89 (169)
T smart00650 16 TVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNL-PYNI--- 89 (169)
T ss_pred EEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECC-Cccc---
Confidence 8999999999999999985 577777776544333322211 2367888899988888777899999864 2222
Q ss_pred HHHHHHHHHhh--cCCCeEEEEE
Q 013393 125 DGILLLELDRL--LRPGGYFVYS 145 (444)
Q Consensus 125 ~~~~L~ei~rv--LkPGG~lvis 145 (444)
....+..+.+. +.++|.++++
T Consensus 90 ~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 90 STPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred HHHHHHHHHhcCCCcceEEEEEE
Confidence 12344444432 4588998885
No 137
>PRK03612 spermidine synthase; Provisional
Probab=98.53 E-value=6.3e-07 Score=95.88 Aligned_cols=122 Identities=16% Similarity=0.089 Sum_probs=82.6
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc------------CCCcEEEEecCcc-CCCCC
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKR-LPYPS 106 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~------------~~~~~~~~~d~~~-lp~~~ 106 (444)
++++|||+|||+|..+..+++. +++.+|++ +.+++.+++. ..++.+...|..+ +...+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid-----~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~ 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLD-----PAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECC-----HHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC
Confidence 4568999999999999988874 35555555 4555555551 2456777777655 22334
Q ss_pred CCccEEEecccccccccc-----HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 107 RSFELAHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 107 ~sFDlI~~~~~~l~~~~d-----~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
++||+|++.. ..+..+. ..++++++.+.|||||.++++..+++.. .+...++.+.+++.||.+.
T Consensus 372 ~~fDvIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 372 EKFDVIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA----PKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CCCCEEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc----hHHHHHHHHHHHHcCCEEE
Confidence 7899999875 2332221 1368999999999999999977554322 2345577888888899433
No 138
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.2e-06 Score=83.64 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=81.9
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEE
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELA 112 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI 112 (444)
+.||. +|||.|.|+|.++.+|+. ..|+..++.......|..++..-. +..+.+...|..+.-+++ .||.|
T Consensus 92 i~pg~---rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav 167 (256)
T COG2519 92 ISPGS---RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAV 167 (256)
T ss_pred CCCCC---EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEE
Confidence 44555 999999999999999995 367777666544433333222211 223666677776665554 89999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEe
Q 013393 113 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 113 ~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~ 176 (444)
+.- .+++..++..+.++|+|||.+++-.|.. .+-....+.+++.||..++
T Consensus 168 ~LD------mp~PW~~le~~~~~Lkpgg~~~~y~P~v--------eQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 168 FLD------LPDPWNVLEHVSDALKPGGVVVVYSPTV--------EQVEKTVEALRERGFVDIE 217 (256)
T ss_pred EEc------CCChHHHHHHHHHHhCCCcEEEEEcCCH--------HHHHHHHHHHHhcCccchh
Confidence 843 2788899999999999999999977663 2334445556666885443
No 139
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.50 E-value=2.1e-07 Score=87.86 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEE
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGV 96 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~ 96 (444)
......+.+.+. ++++. +|||||||+|.++..|+.. .|+++|..+.-...++..++.....++.+..
T Consensus 58 P~~~a~~l~~L~-----l~pg~---~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALD-----LKPGD---RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTT-----C-TT----EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHh-----cCCCC---EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 333444444553 45665 8999999999999888762 3678877775444444444333334778888
Q ss_pred ecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 97 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 97 ~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
.|...---....||.|++..+ ..-. =..+.+.||+||++++-
T Consensus 130 gdg~~g~~~~apfD~I~v~~a-~~~i------p~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAA-VPEI------PEALLEQLKPGGRLVAP 171 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSB-BSS--------HHHHHTEEEEEEEEEE
T ss_pred cchhhccccCCCcCEEEEeec-cchH------HHHHHHhcCCCcEEEEE
Confidence 885432223468999998874 3321 23466779999999984
No 140
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.45 E-value=4.5e-07 Score=91.37 Aligned_cols=104 Identities=19% Similarity=0.408 Sum_probs=67.0
Q ss_pred CCCeEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHHHHc----------CCCcEEEEecCccC----CCC-
Q 013393 44 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER----------GIPSTLGVLGTKRL----PYP- 105 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a~e~----------~~~~~~~~~d~~~l----p~~- 105 (444)
...+|||+|||-|.-..-... +.++|+|++...+.++..+...-. .-.+.+...|.... .++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 445899999998864444433 367899998887777665552211 12345666664321 133
Q ss_pred -CCCccEEEecccccccc-ccH---HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 106 -SRSFELAHCSRCRIDWL-QRD---GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 106 -~~sFDlI~~~~~~l~~~-~d~---~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
...||+|-|-++ +||. .+. ..+|.++...|+|||+|+.++|.
T Consensus 142 ~~~~FDvVScQFa-lHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFA-LHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 359999999985 7773 333 36999999999999999998776
No 141
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.42 E-value=1.1e-06 Score=97.26 Aligned_cols=122 Identities=16% Similarity=0.174 Sum_probs=81.2
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC---CcEEEEecCccC-CCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRL-PYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~---~~~~~~~d~~~l-p~~~~sFDlI~~~~~~ 118 (444)
++|||+|||+|.++.+++.+ .|+++|+++..+..+..+... ++. ++.+...|..+. .-..++||+|++.--.
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~-ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL-NGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-hCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 48999999999999999874 478888887776655544433 333 467888885442 1114689999985311
Q ss_pred c----------cccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 119 I----------DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 119 l----------~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
+ ....+...++..+.++|+|||.++++..... .....+.+.+.|+.+...
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---------~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---------FKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------CChhHHHHHhCCCeEEEE
Confidence 1 1123456788999999999999988654321 111255667777765544
No 142
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.5e-06 Score=81.24 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=61.9
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhh--CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecC-ccCCCCCCCccEEEe
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGT-KRLPYPSRSFELAHC 114 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~-~~lp~~~~sFDlI~~ 114 (444)
++++. +|||||||+|..++.|++ ..|+.++..+.-...+..++.. .+. ++.+.+.|. ..+| +...||.|++
T Consensus 70 ~~~g~---~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~-lg~~nV~v~~gDG~~G~~-~~aPyD~I~V 144 (209)
T COG2518 70 LKPGD---RVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET-LGYENVTVRHGDGSKGWP-EEAPYDRIIV 144 (209)
T ss_pred CCCCC---eEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHH-cCCCceEEEECCcccCCC-CCCCcCEEEE
Confidence 34454 899999999999999987 3666676655322222222222 243 677777774 3344 2478999998
Q ss_pred ccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 115 SRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 115 ~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
..+ ...++ ..+.+.|||||++++-
T Consensus 145 taa-a~~vP------~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 145 TAA-APEVP------EALLDQLKPGGRLVIP 168 (209)
T ss_pred eec-cCCCC------HHHHHhcccCCEEEEE
Confidence 774 43332 2356679999999984
No 143
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.42 E-value=3.5e-06 Score=88.54 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=78.2
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCcc----CCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKR----LPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~----lp~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..+++. .|+|+|+++.++..+..+. +..+ .++.+...|+.+ +++.+++||+|++..-
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP- 376 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENA-RRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPP- 376 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH-HHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcC-
Confidence 38999999999999999874 6788888877766555333 3333 357888888653 3355678999998642
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+. .....+..+.+ ++|++.+++|..+. ..-+.+..+ .+.||++.....
T Consensus 377 --r~-g~~~~~~~l~~-~~~~~ivyvSCnp~--------tlaRDl~~L-~~~gY~l~~i~~ 424 (443)
T PRK13168 377 --RA-GAAEVMQALAK-LGPKRIVYVSCNPA--------TLARDAGVL-VEAGYRLKRAGM 424 (443)
T ss_pred --Cc-ChHHHHHHHHh-cCCCeEEEEEeChH--------HhhccHHHH-hhCCcEEEEEEE
Confidence 21 12345555555 69999999985431 112233433 356888776654
No 144
>PLN02672 methionine S-methyltransferase
Probab=98.39 E-value=1.4e-06 Score=99.07 Aligned_cols=123 Identities=14% Similarity=0.129 Sum_probs=81.6
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc----------------CCCcEEEEecCccCCCC
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----------------GIPSTLGVLGTKRLPYP 105 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~----------------~~~~~~~~~d~~~lp~~ 105 (444)
.+|||+|||+|..+..+++. .++++|+++..+..+..+..... ..++.+...|.....-.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~ 199 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD 199 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence 47999999999999998863 58899998877766655443321 02467777775443211
Q ss_pred -CCCccEEEecccccc-------------c------------c--------ccH----HHHHHHHHhhcCCCeEEEEEcC
Q 013393 106 -SRSFELAHCSRCRID-------------W------------L--------QRD----GILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 106 -~~sFDlI~~~~~~l~-------------~------------~--------~d~----~~~L~ei~rvLkPGG~lvis~p 147 (444)
..+||+|+|+--.+. + . +|. .+++.++.++|+|||++++-.
T Consensus 200 ~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi- 278 (1082)
T PLN02672 200 NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM- 278 (1082)
T ss_pred cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE-
Confidence 236999999621110 0 0 111 367888889999999999832
Q ss_pred CCCCCChhhHHHHHHHH-HHHHhcCeEEEee
Q 013393 148 EAYAHDPENRRIWNAMY-DLLKSMCWKIVSK 177 (444)
Q Consensus 148 ~~~~~~~~~~~~~~~l~-~l~~~~gf~~v~~ 177 (444)
+..+-+.+. +++++.||+....
T Consensus 279 --------G~~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 279 --------GGRPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred --------CccHHHHHHHHHHHHCCCCeeEE
Confidence 223445677 6888899876544
No 145
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.39 E-value=9.6e-07 Score=84.27 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=77.9
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccC-C--CCCCCccEEEecccc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P--YPSRSFELAHCSRCR 118 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~l-p--~~~~sFDlI~~~~~~ 118 (444)
.+||||||.|.+...+|++ .++|+++...-+..+. +.+.+.+. |+.+...|+..+ + +++++.|-|+.++.
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP- 128 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP- 128 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence 7999999999999999984 7899998876554444 56677788 899988886553 2 45569999998773
Q ss_pred ccccccH--------HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 119 IDWLQRD--------GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 119 l~~~~d~--------~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
-+|.... ..+++.+.++|+|||.|.+.+..
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 6664322 37999999999999999996543
No 146
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.37 E-value=4.8e-06 Score=78.08 Aligned_cols=133 Identities=13% Similarity=0.062 Sum_probs=78.8
Q ss_pred cCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh---CCceEEEcCcccchHH
Q 013393 4 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHEN 80 (444)
Q Consensus 4 ~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a 80 (444)
.|-.+..|.+. .+....+...+.+.+.+.. ...+ .+|||+|||+|.++..++. ..|+++|+++..+..+
T Consensus 21 ~g~~l~~~~~~-~~Rp~~d~v~e~l~~~l~~----~~~~---~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a 92 (199)
T PRK10909 21 RGRKLPVPDSP-GLRPTTDRVRETLFNWLAP----VIVD---ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQL 92 (199)
T ss_pred CCCEeCCCCCC-CcCcCCHHHHHHHHHHHhh----hcCC---CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHH
Confidence 45556665532 2345555555555555532 1112 3899999999999986543 3677887776554433
Q ss_pred HHHHHHHcCC-CcEEEEecCcc-CCCCCCCccEEEecccccccccc-HHHHHHHHHh--hcCCCeEEEEEcCC
Q 013393 81 QIQFALERGI-PSTLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQR-DGILLLELDR--LLRPGGYFVYSSPE 148 (444)
Q Consensus 81 ~i~~a~e~~~-~~~~~~~d~~~-lp~~~~sFDlI~~~~~~l~~~~d-~~~~L~ei~r--vLkPGG~lvis~p~ 148 (444)
.. .++..+. ++.+...|... ++...++||+|++.-- |... ...++..+.. +|+|+|.++++.+.
T Consensus 93 ~~-Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP---y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 93 IK-NLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP---FRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HH-HHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC---CCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 32 2233333 56777777544 3223457999998752 2222 2345555544 48999999997554
No 147
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.36 E-value=2e-06 Score=82.75 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=67.9
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
+.++|+|||+|+|.++..++++ +++..|+ +..++.+++ ..++.+..+|+. -++|. +|+++.++++.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 3458999999999999999874 4455554 333444444 667888888876 66765 99999999644
Q ss_pred cccccHH--HHHHHHHhhcCCC--eEEEEEcCC
Q 013393 120 DWLQRDG--ILLLELDRLLRPG--GYFVYSSPE 148 (444)
Q Consensus 120 ~~~~d~~--~~L~ei~rvLkPG--G~lvis~p~ 148 (444)
.| ++.. .+|+++++.|+|| |+++|.+.-
T Consensus 170 ~~-~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 170 DW-SDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GS--HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hc-chHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 44 4443 8999999999999 999997643
No 148
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.35 E-value=1.8e-06 Score=82.96 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=66.1
Q ss_pred CCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccC-C-----CCCCCccE
Q 013393 45 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-----YPSRSFEL 111 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~l-p-----~~~~sFDl 111 (444)
+++|||+|||+|.-+..++. ..++++|+++.....+..++ ++.+. .+.+...|+.+. + .+.++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~-~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFI-KKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 45899999999987666654 25788888875554444333 33343 466777775442 2 12468999
Q ss_pred EEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 112 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 112 I~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
|++-.. .+....++.++.+.|||||.+++..
T Consensus 148 VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 986531 2455688999999999999988743
No 149
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.35 E-value=3.6e-06 Score=80.47 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=68.8
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcE-EEEecCcc-----CCCCCCCccEEEec
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKR-----LPYPSRSFELAHCS 115 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~-~~~~d~~~-----lp~~~~sFDlI~~~ 115 (444)
.++|||+|||||.|+..+++. .|+++|+++.++.+.. .....+. +...++.. .+..-..||+++++
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l-----~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS 150 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKL-----RQDERVKVLERTNIRYVTPADIFPDFATFDVSFIS 150 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH-----hcCCCeeEeecCCcccCCHhHcCCCceeeeEEEee
Confidence 348999999999999999885 5788887776554422 2222221 22223322 22112357777665
Q ss_pred cccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCC------------CCh-hhHHHHHHHHHHHHhcCeEEEee
Q 013393 116 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------HDP-ENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 116 ~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~------------~~~-~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
.+ ..+..+.+.|+| |.+++-..+.+. +++ .....-..+...+.+.||++...
T Consensus 151 ~~---------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 151 LI---------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred hH---------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 43 248889999999 777754333221 111 11223346666677778876544
No 150
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.34 E-value=4.5e-06 Score=80.62 Aligned_cols=121 Identities=16% Similarity=0.231 Sum_probs=80.5
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCC---CC
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYP---SR 107 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~---~~ 107 (444)
++.||. +|||.|+|+|+++.+|++ ..|...|+...-...++.++.. .+. ++.+...|...--|+ ++
T Consensus 37 ~i~pG~---~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 37 DIRPGS---RVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp T--TT----EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TT
T ss_pred CCCCCC---EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccC
Confidence 566777 999999999999999986 2577777665444444433322 233 578888887554342 36
Q ss_pred CccEEEeccccccccccHHHHHHHHHhhc-CCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEe
Q 013393 108 SFELAHCSRCRIDWLQRDGILLLELDRLL-RPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 108 sFDlI~~~~~~l~~~~d~~~~L~ei~rvL-kPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~ 176 (444)
.||.|+.-. +++..++..+.++| ||||++++-.|.. .+-....+.+++.||..+.
T Consensus 113 ~~DavfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP~i--------eQv~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 113 DFDAVFLDL------PDPWEAIPHAKRALKKPGGRICCFSPCI--------EQVQKTVEALREHGFTDIE 168 (247)
T ss_dssp SEEEEEEES------SSGGGGHHHHHHHE-EEEEEEEEEESSH--------HHHHHHHHHHHHTTEEEEE
T ss_pred cccEEEEeC------CCHHHHHHHHHHHHhcCCceEEEECCCH--------HHHHHHHHHHHHCCCeeeE
Confidence 799997432 67778999999999 8999999977763 3444566677778997664
No 151
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.33 E-value=2e-06 Score=78.77 Aligned_cols=101 Identities=20% Similarity=0.166 Sum_probs=61.6
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC----CCcEEEEecCcc-C--C-CCCCCccEE
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKR-L--P-YPSRSFELA 112 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~----~~~~~~~~d~~~-l--p-~~~~sFDlI 112 (444)
.++|||+|||+|..+..++.. .|+..|..+ +-+.....++.++ .++.+...+..+ . . ...++||+|
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 348999999999888777764 677777766 3333333444332 345566665322 1 1 234689999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 113 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 113 ~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+++.| +......+.++.-+.++|+|+|.++++.+.
T Consensus 124 lasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 124 LASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 99996 555677889999999999999998876543
No 152
>PHA03412 putative methyltransferase; Provisional
Probab=98.32 E-value=2.2e-06 Score=81.82 Aligned_cols=94 Identities=9% Similarity=0.078 Sum_probs=61.9
Q ss_pred eEEEECCCcchHHHHHhhCC--ceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc-cc
Q 013393 47 NVLDVGCGVASFGAYLLSHD--IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW-LQ 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~--V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~-~~ 123 (444)
+|||+|||+|.++..++++. .....+.+.|+++.+.+.|+++...+.+...|+...++ +++||+|+|+-=.... ..
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~ 130 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKTS 130 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcccc
Confidence 89999999999999887530 00123444455555666776665567888888776554 4689999997411110 01
Q ss_pred c----------HHHHHHHHHhhcCCCeE
Q 013393 124 R----------DGILLLELDRLLRPGGY 141 (444)
Q Consensus 124 d----------~~~~L~ei~rvLkPGG~ 141 (444)
+ ...++..+.++++||+.
T Consensus 131 d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 131 DFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1 23688888897777776
No 153
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.31 E-value=4.8e-06 Score=86.05 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=68.7
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC---CcEEEEecCccCC--C--CCCCccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLP--Y--PSRSFELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~---~~~~~~~d~~~lp--~--~~~sFDlI~~~ 115 (444)
++|||+|||+|.++..++.. .|+++|+++..+..+..+. ..++. ++.+...|+.... + ..++||+|++.
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~-~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNV-ELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 48999999999998775542 5888888887766555433 33343 4678788865431 1 24689999987
Q ss_pred cccccc--------cccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 116 RCRIDW--------LQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 116 ~~~l~~--------~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
--.+.- ..+...++..+.++|+|||.++..+-+
T Consensus 301 PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 421111 123446677788999999999976543
No 154
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.31 E-value=2.5e-06 Score=80.74 Aligned_cols=97 Identities=21% Similarity=0.289 Sum_probs=65.4
Q ss_pred eEEEECCCcchHHHHHhhC------CceEEEcCcccchHHHHHHHHHcCC----CcEEEEecC--cc--CCCCCCCccEE
Q 013393 47 NVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGT--KR--LPYPSRSFELA 112 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~------~V~gvdis~~dis~a~i~~a~e~~~----~~~~~~~d~--~~--lp~~~~sFDlI 112 (444)
+||+||||.|.....+++. .+.++|++|. +++..+++.. .....+.|. .. -|...+++|.|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~-----Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR-----AIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChH-----HHHHHHhccccchhhhcccceeccchhccCCCCcCccceE
Confidence 7999999999988888763 3566666654 4455444421 222223332 22 34557899999
Q ss_pred Eecccccccc-ccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 113 HCSRCRIDWL-QRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 113 ~~~~~~l~~~-~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++.+++.... ......+.+++++|||||.+++.+-.
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 9988533332 33458999999999999999996543
No 155
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.30 E-value=4.9e-06 Score=80.98 Aligned_cols=156 Identities=19% Similarity=0.318 Sum_probs=100.9
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC------CceEEEcCcccchHHHHHHHHHcCCC--
Q 013393 20 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIP-- 91 (444)
Q Consensus 20 g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~------~V~gvdis~~dis~a~i~~a~e~~~~-- 91 (444)
|++.....+.+.+......|+..+.+-+||||.||.|......+.. .+.-.|+++..+...+ +.+++++..
T Consensus 111 GIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i 189 (311)
T PF12147_consen 111 GIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDI 189 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccc
Confidence 3444444555555554445655556668999999999877666542 3455566665543333 345556653
Q ss_pred cEEEEecCcc---CCCCCCCccEEEeccccccccccHH---HHHHHHHhhcCCCeEEEEEcCCCCCCChhhH--------
Q 013393 92 STLGVLGTKR---LPYPSRSFELAHCSRCRIDWLQRDG---ILLLELDRLLRPGGYFVYSSPEAYAHDPENR-------- 157 (444)
Q Consensus 92 ~~~~~~d~~~---lp~~~~sFDlI~~~~~~l~~~~d~~---~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~-------- 157 (444)
++|...|+.+ +.--+...++++.+. +++..+|-. ..+.-+.+.+.|||+++.+..++.+..+.-.
T Consensus 190 ~~f~~~dAfd~~~l~~l~p~P~l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~ 268 (311)
T PF12147_consen 190 ARFEQGDAFDRDSLAALDPAPTLAIVSG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRD 268 (311)
T ss_pred eEEEecCCCCHhHhhccCCCCCEEEEec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccC
Confidence 3788777443 221134579999888 577766643 5788999999999999999877654432110
Q ss_pred -HHH-------HHHHHHHHhcCeEEEee
Q 013393 158 -RIW-------NAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 158 -~~~-------~~l~~l~~~~gf~~v~~ 177 (444)
..| .++.++.+.+||+.+..
T Consensus 269 g~~WvMRrRsq~EmD~Lv~~aGF~K~~q 296 (311)
T PF12147_consen 269 GKAWVMRRRSQAEMDQLVEAAGFEKIDQ 296 (311)
T ss_pred CCceEEEecCHHHHHHHHHHcCCchhhh
Confidence 123 48899999999976544
No 156
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.26 E-value=1.2e-06 Score=80.93 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=84.5
Q ss_pred cCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcC
Q 013393 10 FPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG 89 (444)
Q Consensus 10 fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~ 89 (444)
|-|.|++|.-+-+++.+.+.-- .-.++..+.++||+|+|.|..+..++.. --++-+..+|..|+..-++++
T Consensus 84 ~lgrGsMFifSe~QF~klL~i~------~p~w~~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~ 154 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFRKLLVIG------GPAWGQEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKN 154 (288)
T ss_pred ccccCceEEecHHHHHHHHhcC------CCccCCCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcC
Confidence 5677888888888776554421 1234566679999999999999888764 112334455666666666554
Q ss_pred CCcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCC-CeEEEEE
Q 013393 90 IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRP-GGYFVYS 145 (444)
Q Consensus 90 ~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkP-GG~lvis 145 (444)
-++ ....++.-.+-+||+|.|-+ ++.-+.++.++|+.+..+|+| .|..+++
T Consensus 155 ynV----l~~~ew~~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 155 YNV----LTEIEWLQTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred Cce----eeehhhhhcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 433 22223322345699999988 577678888999999999999 8988875
No 157
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.26 E-value=1.4e-05 Score=83.63 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=75.8
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccC----CCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRL----PYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~l----p~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..+++. .|+++|+++.++..+..+. +..+ .++.+...|..+. ++.+++||+|++..-
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~-~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP- 371 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNA-ELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP- 371 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHH-HHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC-
Confidence 38999999999999999873 6888888877765555433 3333 3678888886542 234567999997542
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
...-...++..+.+ ++|++.++++..+ .....-...+.+.||++....
T Consensus 372 --r~G~~~~~l~~l~~-l~~~~ivyvsc~p---------~tlard~~~l~~~gy~~~~~~ 419 (431)
T TIGR00479 372 --RKGCAAEVLRTIIE-LKPERIVYVSCNP---------ATLARDLEFLCKEGYGITWVQ 419 (431)
T ss_pred --CCCCCHHHHHHHHh-cCCCEEEEEcCCH---------HHHHHHHHHHHHCCeeEEEEE
Confidence 11112456666554 8999988886432 122222334455688765543
No 158
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.25 E-value=1.9e-05 Score=79.23 Aligned_cols=97 Identities=21% Similarity=0.342 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcE
Q 013393 20 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PST 93 (444)
Q Consensus 20 g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~ 93 (444)
+...|+..+...+........+.+...++||||||+|.....++.+ .++|+|+++..+..++.+.+...+. .+.
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~ 169 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIR 169 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEE
Confidence 4577888888887543222222233457999999999777766653 5788888877766666544443123 334
Q ss_pred EEEe-cCccC----CCCCCCccEEEecc
Q 013393 94 LGVL-GTKRL----PYPSRSFELAHCSR 116 (444)
Q Consensus 94 ~~~~-d~~~l----p~~~~sFDlI~~~~ 116 (444)
+... +...+ ..+.+.||+|+|+-
T Consensus 170 ~~~~~~~~~i~~~i~~~~~~fDlivcNP 197 (321)
T PRK11727 170 LRLQKDSKAIFKGIIHKNERFDATLCNP 197 (321)
T ss_pred EEEccchhhhhhcccccCCceEEEEeCC
Confidence 4322 22111 12457899999985
No 159
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.25 E-value=1.6e-05 Score=77.52 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=90.3
Q ss_pred CCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc----------------------------------
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---------------------------------- 88 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~---------------------------------- 88 (444)
.-+||=-|||.|.++-.++.+ .+.|.++|.-|+-... +....
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~--fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN--FILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH--HHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 347999999999999999987 3556666655532211 11110
Q ss_pred --------CCCcEEEEecCccCCCCC---CCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChh--
Q 013393 89 --------GIPSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE-- 155 (444)
Q Consensus 89 --------~~~~~~~~~d~~~lp~~~---~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~-- 155 (444)
..+.....+|+.+...++ ++||+|++.+ .+.-.++.-.++..+.++|||||+++=..|-.|...+.
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~ 213 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSI 213 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCC
Confidence 001122233433333233 6899999887 56666777899999999999999998777776654443
Q ss_pred -----hHHHHHHHHHHHHhcCeEEEeeec
Q 013393 156 -----NRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 156 -----~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
-.-.++++..++++.||+++.++.
T Consensus 214 ~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 214 PNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 223688999999999999987655
No 160
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.24 E-value=6.4e-06 Score=77.17 Aligned_cols=117 Identities=15% Similarity=0.248 Sum_probs=80.9
Q ss_pred CeEEEECCCcchHHHHHhh-CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC---CCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP---SRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~---~~sFDlI~~~~~~l~~ 121 (444)
-++|||||=+......-.. -.|+.+|+.+.+ -.+...|+.+.|.| +++||+|+|+. ++.+
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~---------------~~I~qqDFm~rplp~~~~e~FdvIs~SL-VLNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQH---------------PGILQQDFMERPLPKNESEKFDVISLSL-VLNF 116 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCC---------------CCceeeccccCCCCCCcccceeEEEEEE-EEee
Confidence 4799999986543322111 135566655422 22456777776654 67899999999 7999
Q ss_pred cccHH---HHHHHHHhhcCCCeE-----EEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 122 LQRDG---ILLLELDRLLRPGGY-----FVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 122 ~~d~~---~~L~ei~rvLkPGG~-----lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
++++. +.++.+.+.|+|+|. |++..|.+..... ..-.-..+..+++.+||..+..+.
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NS-Ry~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNS-RYMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcc-cccCHHHHHHHHHhCCcEEEEEEe
Confidence 98775 899999999999999 8888777532110 011235788999999999887654
No 161
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.24 E-value=7.2e-06 Score=77.99 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=77.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHH-HHcCC----------------CcEEEEecCccCCCC-
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFA-LERGI----------------PSTLGVLGTKRLPYP- 105 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a-~e~~~----------------~~~~~~~d~~~lp~~- 105 (444)
.+||..|||.|.-...|+++ .|+|+|+|+. .++.+ ++++. ++.+.++|+-.++..
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~-----Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPT-----AIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTEEEEEEES-HH-----HHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CeEEEeCCCChHHHHHHHHCCCeEEEEecCHH-----HHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 38999999999999999987 4566665554 44444 22221 345677787776533
Q ss_pred CCCccEEEecccccccc-ccHHHHHHHHHhhcCCCeEEEEEcC--CCC--CCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 106 SRSFELAHCSRCRIDWL-QRDGILLLELDRLLRPGGYFVYSSP--EAY--AHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~-~d~~~~L~ei~rvLkPGG~lvis~p--~~~--~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
.++||+|+=..++.... +...++.+.+.++|+|||.+++.+- ... ...+.. -.-.++.+++. .+|++...+.
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~-v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS-VTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-----HHHHHHHHT-TTEEEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC-CCHHHHHHHhc-CCcEEEEEec
Confidence 25799999654332222 3446899999999999999444321 111 111111 12247778887 7887766544
No 162
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.23 E-value=9.6e-06 Score=86.50 Aligned_cols=102 Identities=19% Similarity=0.143 Sum_probs=74.0
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCC--CCCCCccEEEecc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR 116 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp--~~~~sFDlI~~~~ 116 (444)
....+||||||.|.+...+|.. .++|+|+...-+..+..+ +.+.+. ++.+...|+..+. ++++++|.|+.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~-~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKL-AGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHH-HHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3457999999999999999874 789999987655554433 334444 5566555543322 6788999999877
Q ss_pred ccccccccH--------HHHHHHHHhhcCCCeEEEEEcC
Q 013393 117 CRIDWLQRD--------GILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 117 ~~l~~~~d~--------~~~L~ei~rvLkPGG~lvis~p 147 (444)
--+|.... ..++..+.++|||||.+.+.+.
T Consensus 426 -PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 426 -PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred -CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 35663321 3799999999999999999654
No 163
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.23 E-value=6.5e-06 Score=81.29 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=65.6
Q ss_pred CeEEEECCCcc----hHHHHHhhC--C-ceEEEcCcccchHHHHHHHHHc--------C---------------------
Q 013393 46 RNVLDVGCGVA----SFGAYLLSH--D-IIAMSLAPNDVHENQIQFALER--------G--------------------- 89 (444)
Q Consensus 46 ~rVLDVGCGtG----~~a~~La~~--~-V~gvdis~~dis~a~i~~a~e~--------~--------------------- 89 (444)
-+|+..||.|| ++++.+.+. . -..+.|.+.|+++..++.|++. +
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 37999999999 455555542 0 0023344445555555554432 0
Q ss_pred -------CCcEEEEecCccCCCC-CCCccEEEecccccccc-ccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 90 -------IPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWL-QRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 90 -------~~~~~~~~d~~~lp~~-~~sFDlI~~~~~~l~~~-~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
..+.|...|....+++ .+.||+|+|.++++++. +...+++.++.+.|+|||+|++....
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 1234555665554443 57899999999655553 23468999999999999999985433
No 164
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.17 E-value=1.1e-05 Score=78.77 Aligned_cols=133 Identities=16% Similarity=0.210 Sum_probs=81.1
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcc----hHHHHHhhCCc----eEEEcCcccchHHHHHHH
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVA----SFGAYLLSHDI----IAMSLAPNDVHENQIQFA 85 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG----~~a~~La~~~V----~gvdis~~dis~a~i~~a 85 (444)
-|.|.+..+++...-.+.++.....- .+ +.-+|.-.||+|| ++++.|.+... ..+.|.+.|++...++.|
T Consensus 68 ~T~FFR~~~~f~~l~~~v~p~l~~~~-~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A 145 (268)
T COG1352 68 VTEFFRDPEHFEELRDEVLPELVKRK-KG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKA 145 (268)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhhc-cC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHH
Confidence 46677777776665555554221111 11 3447999999999 56666655321 235555666666666655
Q ss_pred HHc---------CC-------------------------CcEEEEecCccCCCCCCCccEEEeccccccccc-cHHHHHH
Q 013393 86 LER---------GI-------------------------PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ-RDGILLL 130 (444)
Q Consensus 86 ~e~---------~~-------------------------~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~-d~~~~L~ 130 (444)
+.. +. .+.|...+...-++..+.||+|+|.+.++.+.. ...+++.
T Consensus 146 ~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~ 225 (268)
T COG1352 146 RAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILR 225 (268)
T ss_pred hcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHH
Confidence 432 11 123444443333323467999999996555532 2348999
Q ss_pred HHHhhcCCCeEEEEEcCC
Q 013393 131 ELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 131 ei~rvLkPGG~lvis~p~ 148 (444)
.++..|+|||+|++-...
T Consensus 226 ~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 226 RFADSLKPGGLLFLGHSE 243 (268)
T ss_pred HHHHHhCCCCEEEEccCc
Confidence 999999999999995433
No 165
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.15 E-value=1.7e-05 Score=79.40 Aligned_cols=116 Identities=21% Similarity=0.291 Sum_probs=76.6
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHc----C-CCcEE-EEecCccCCCCCCCccEEEecc----
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G-IPSTL-GVLGTKRLPYPSRSFELAHCSR---- 116 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~----~-~~~~~-~~~d~~~lp~~~~sFDlI~~~~---- 116 (444)
.|||-=||||++..... ..|..+.+.|+.+.|++-|+.+ + .+..+ .+.|+..+|+++++||.|+|-.
T Consensus 200 ~vlDPFcGTGgiLiEag---l~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGr 276 (347)
T COG1041 200 LVLDPFCGTGGILIEAG---LMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGR 276 (347)
T ss_pred EeecCcCCccHHHHhhh---hcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCc
Confidence 89999999999876542 2333444445555555555544 2 23333 3449999999988999999831
Q ss_pred -cccccccc----HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 117 -CRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 117 -~~l~~~~d----~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
....- .. ...+|+.+.++||+||++++..|.. -...+.+.+|+++..-.
T Consensus 277 st~~~~-~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~-------------~~~~~~~~~f~v~~~~~ 330 (347)
T COG1041 277 STKIKG-EGLDELYEEALESASEVLKPGGRIVFAAPRD-------------PRHELEELGFKVLGRFT 330 (347)
T ss_pred cccccc-ccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-------------chhhHhhcCceEEEEEE
Confidence 00111 11 3588999999999999999987721 12345677888876644
No 166
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.15 E-value=1.3e-05 Score=80.50 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=66.7
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCC-CCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~-~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..+++. .|+|+|+++.++..+.. .++..+. ++.+...|+..+.. ..++||+|++..- .
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~-n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP---r 250 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQ-SAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP---R 250 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC---C
Confidence 48999999999999999974 68888888776655543 3344444 57888888766542 2457999998741 1
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
......+.+...-++|++.++++..+
T Consensus 251 -~G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 251 -RGIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred -CCccHHHHHHHHHcCCCeEEEEECCc
Confidence 11122333444457899888887654
No 167
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.12 E-value=1.3e-05 Score=75.88 Aligned_cols=96 Identities=21% Similarity=0.377 Sum_probs=60.9
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCC-------------------------------
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI------------------------------- 90 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~------------------------------- 90 (444)
..+|||||-+|.++..+++ +.++|+||++.-+ +.|++.-.
T Consensus 60 ~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI-----~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 60 KQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLI-----QRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred ceeEeccCCcchhHHHHHHhhccceeeEeeccHHHH-----HHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 4799999999999998887 4788888876544 44443200
Q ss_pred ---------CcEEE----EecCc-cCCCCCCCccEEEeccc----ccccccc-HHHHHHHHHhhcCCCeEEEEEc
Q 013393 91 ---------PSTLG----VLGTK-RLPYPSRSFELAHCSRC----RIDWLQR-DGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 91 ---------~~~~~----~~d~~-~lp~~~~sFDlI~~~~~----~l~~~~d-~~~~L~ei~rvLkPGG~lvis~ 146 (444)
++.+. +.+.. -+.+....||+|.|-.. .+.|..+ ...+|+.+.++|.|||+|++.-
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 00000 11111 11233567999999531 1333222 2489999999999999999843
No 168
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.11 E-value=2.1e-05 Score=66.54 Aligned_cols=100 Identities=29% Similarity=0.421 Sum_probs=65.5
Q ss_pred EEEECCCcchHH--HHHhhC--CceEEEcCcccchHHHHHHHHHcCCC-cEEEEecCcc--CCCCC-CCccEEEeccccc
Q 013393 48 VLDVGCGVASFG--AYLLSH--DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKR--LPYPS-RSFELAHCSRCRI 119 (444)
Q Consensus 48 VLDVGCGtG~~a--~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~--lp~~~-~sFDlI~~~~~~l 119 (444)
+||+|||+|... ..+... .++++|+++.++......... .... +.+...+... +++.. ..||++ +..+..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999854 333332 456666666544441111111 1111 4566666555 77776 489999 776556
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
++.. ....+.++.++|+|+|.+++......
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 6544 78999999999999999999766543
No 169
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.10 E-value=8e-06 Score=76.91 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=83.9
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc---CCCcEEEEecCccC--CCCCCCccEEEecc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRL--PYPSRSFELAHCSR 116 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~l--p~~~~sFDlI~~~~ 116 (444)
..+|||...|-|.+++..+++ .|+.++.+|.-+.-+.++- -.+ ...+.+..+|+.+. .|+|++||+|+---
T Consensus 135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNP-wSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP 213 (287)
T COG2521 135 GERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNP-WSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP 213 (287)
T ss_pred CCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCC-CCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence 348999999999999998885 4666776665442222110 001 12356667775553 37899999998632
Q ss_pred cccccc--ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 117 CRIDWL--QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 117 ~~l~~~--~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
-.+... -.-..+.+|++|+|||||.++--+-.+-.+. ........+.+.+++.||.++...
T Consensus 214 PRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry-rG~d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 214 PRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY-RGLDLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred CccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc-ccCChhHHHHHHHHhcCceeeeee
Confidence 222221 1225899999999999999986443322111 112334578889999999876553
No 170
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.09 E-value=5.3e-06 Score=84.44 Aligned_cols=103 Identities=18% Similarity=0.296 Sum_probs=79.2
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEEE
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAH 113 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI~ 113 (444)
.+.++. .++|+|||.|....++.. .+++|++.++.............. .....+.+.+....||+++.||.+.
T Consensus 107 ~~~~~~---~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 107 SCFPGS---KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred cCcccc---cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEE
Confidence 444554 799999999988887765 467777777665555443332222 2234456778888999999999999
Q ss_pred eccccccccccHHHHHHHHHhhcCCCeEEEE
Q 013393 114 CSRCRIDWLQRDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 114 ~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvi 144 (444)
+.. ...|.++...+++|++|+++|||+++.
T Consensus 184 ~ld-~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 184 FLE-VVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred EEe-ecccCCcHHHHHHHHhcccCCCceEEe
Confidence 999 578889999999999999999999997
No 171
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.03 E-value=7e-06 Score=81.74 Aligned_cols=95 Identities=18% Similarity=0.302 Sum_probs=64.3
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCc--EEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPS--TLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~--~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
++|||||||||.++..-+++ .|++++.+.+ .+-..+.++.++... .+..+..+++..|.++.|+|+|-.. ..
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~i--a~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM-Gy 138 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSI--ADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM-GY 138 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHH--HHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh-hH
Confidence 49999999999998888774 6888877754 344555666666554 4444446665555678999998531 22
Q ss_pred cc---ccHHHHHHHHHhhcCCCeEEE
Q 013393 121 WL---QRDGILLLELDRLLRPGGYFV 143 (444)
Q Consensus 121 ~~---~d~~~~L~ei~rvLkPGG~lv 143 (444)
++ .=.+..|-.=.+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 21 222345556678999999877
No 172
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.01 E-value=7.6e-05 Score=76.76 Aligned_cols=118 Identities=15% Similarity=0.142 Sum_probs=75.7
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCC-CCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~-~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..++.. .|+++|+++..+..+.. .++..+. ++.+...|..+... ..++||+|++.-- .
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~-N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP---r 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQ-SAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP---R 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC---C
Confidence 38999999999999999874 68888888776654443 3333444 67888888755321 1246999998642 2
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
..-...++..+. .++|++.++++..+. ..-+.+..+ .||++.....
T Consensus 311 ~G~~~~~l~~l~-~~~p~~ivyvsc~p~--------TlaRDl~~L---~gy~l~~~~~ 356 (374)
T TIGR02085 311 RGIGKELCDYLS-QMAPKFILYSSCNAQ--------TMAKDIAEL---SGYQIERVQL 356 (374)
T ss_pred CCCcHHHHHHHH-hcCCCeEEEEEeCHH--------HHHHHHHHh---cCceEEEEEE
Confidence 111234555554 479999999975431 223344444 5887765543
No 173
>PLN02476 O-methyltransferase
Probab=98.00 E-value=1.4e-05 Score=78.38 Aligned_cols=97 Identities=14% Similarity=0.100 Sum_probs=67.6
Q ss_pred CCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc-CC-C----CCCCcc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-Y----PSRSFE 110 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp-~----~~~sFD 110 (444)
++++|||||||+|..+..++.. .++++|.++.....+...+ ++.|. .+.+..+|+.+ ++ + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~-~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY-ELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3458999999999999988862 4778888775554444333 33344 46777777533 22 1 136899
Q ss_pred EEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 111 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 111 lI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
+|+.-. .-.+...++..+.+.|+|||.+++-
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 998543 2345678999999999999999874
No 174
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.97 E-value=1.5e-05 Score=83.62 Aligned_cols=120 Identities=23% Similarity=0.251 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--------CceEEEcCcccchHHHHHHHHHc--CC
Q 013393 21 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALER--GI 90 (444)
Q Consensus 21 ~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--------~V~gvdis~~dis~a~i~~a~e~--~~ 90 (444)
++.|.+.+.+.+.-....-....+...|||||||+|.+....+++ .|.+++-++......+ +..+.. +.
T Consensus 163 Y~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~ 241 (448)
T PF05185_consen 163 YDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGD 241 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCC
Confidence 345555555555421111111112458999999999887655442 6788887775443332 222233 45
Q ss_pred CcEEEEecCccCCCCCCCccEEEecccccccc--ccHHHHHHHHHhhcCCCeEEE
Q 013393 91 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL--QRDGILLLELDRLLRPGGYFV 143 (444)
Q Consensus 91 ~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~--~d~~~~L~ei~rvLkPGG~lv 143 (444)
.+.+...|++++..| .++|+|++=. +..+. +--.+.|....|.|||||.++
T Consensus 242 ~V~vi~~d~r~v~lp-ekvDIIVSEl-LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 242 KVTVIHGDMREVELP-EKVDIIVSEL-LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TEEEEES-TTTSCHS-S-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eEEEEeCcccCCCCC-CceeEEEEec-cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 688889999988766 4899999743 23332 222467888899999999877
No 175
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.96 E-value=1.9e-05 Score=74.44 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=66.9
Q ss_pred CCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc-CC-----CCCCCccE
Q 013393 45 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-----YPSRSFEL 111 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp-----~~~~sFDl 111 (444)
+++||+|||++|.-+..+++. .++++|+++.....+. ++.+..+. .+.+..+|+.+ ++ .+.++||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 448999999999999998863 6788888775543333 33333343 56777777543 22 12368999
Q ss_pred EEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 112 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 112 I~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
|+.-. .-.+...++..+.+.|+|||.+++-.
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 99643 23566788999999999999999853
No 176
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.95 E-value=3.3e-05 Score=73.14 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=65.9
Q ss_pred CCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCC--cEEEE-ecCcc-CC-CCCCCccEEEe
Q 013393 45 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP--STLGV-LGTKR-LP-YPSRSFELAHC 114 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~--~~~~~-~d~~~-lp-~~~~sFDlI~~ 114 (444)
+++||+||++.|.-+..|+.. .++++|+.+.....+...+++ .+.. +.+.. +|..+ +. ...++||+|+.
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~-ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE-AGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH-cCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 458999999999988888763 477777776655555443333 2332 34444 34322 22 34689999984
Q ss_pred ccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 115 SRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 115 ~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
-. .-.+...+|..+.++|+|||.+++-
T Consensus 139 Da----dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 139 DA----DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred eC----ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 32 3456679999999999999999973
No 177
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.88 E-value=4.2e-05 Score=74.59 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=48.0
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
.+|||||||+|.++..++++ .++++|+++..+........ . ..++.+...|+..++++ .||.|+++.
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~-~-~~~v~ii~~D~~~~~~~--~~d~Vv~Nl 99 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEI-A-AGNVEIIEGDALKVDLP--EFNKVVSNL 99 (258)
T ss_pred CeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhc-c-CCCEEEEEeccccCCch--hceEEEEcC
Confidence 48999999999999999885 56777766654433322111 1 34678888898887765 489999875
No 178
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.88 E-value=3.3e-05 Score=75.93 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=48.4
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
.+|||+|||+|.++..++++ .++++|+++.++..+..+.. ..++.+..+|+..+++++-.+|.|+++.
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSELQPLKVVANL 113 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHHcCcceEEEeC
Confidence 38999999999999999885 57777777655443332111 2567888899888876543358888764
No 179
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.86 E-value=9e-06 Score=78.81 Aligned_cols=98 Identities=27% Similarity=0.251 Sum_probs=68.7
Q ss_pred CeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccccH
Q 013393 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 125 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~ 125 (444)
..+||+|||.|.....-....++|.| ++...+..++..+.. .....|+..+|+++.+||.+++.. ++||....
T Consensus 47 sv~~d~gCGngky~~~~p~~~~ig~D-----~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsia-vihhlsT~ 119 (293)
T KOG1331|consen 47 SVGLDVGCGNGKYLGVNPLCLIIGCD-----LCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIA-VIHHLSTR 119 (293)
T ss_pred ceeeecccCCcccCcCCCcceeeecc-----hhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhh-hhhhhhhH
Confidence 37999999999654321112344554 444444455544443 556788999999999999999877 67876544
Q ss_pred ---HHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 126 ---GILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 126 ---~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
..+++|+.|+|||||...+......
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 3799999999999999887554433
No 180
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=7e-05 Score=69.60 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=62.9
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhhC-CceEEEcCcccchHHHHHHHHHc---------------CCCcEEEEecCccC
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER---------------GIPSTLGVLGTKRL 102 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~~-~V~gvdis~~dis~a~i~~a~e~---------------~~~~~~~~~d~~~l 102 (444)
|+||- +.||+|.|+|.++..++.- .-.|.+..+++..+..++.+.++ .....+.+.|....
T Consensus 80 L~pG~---s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g 156 (237)
T KOG1661|consen 80 LQPGA---SFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG 156 (237)
T ss_pred hccCc---ceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc
Confidence 55666 8999999999888776631 11122223444445555544433 12345667776665
Q ss_pred CCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 103 PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 103 p~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
--+...||.|||... ..+..+++...|+|||.+++-
T Consensus 157 ~~e~a~YDaIhvGAa-------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 157 YAEQAPYDAIHVGAA-------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCccCCcceEEEccC-------ccccHHHHHHhhccCCeEEEe
Confidence 555678999998742 234567788889999999983
No 181
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=4.6e-05 Score=69.92 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=73.7
Q ss_pred CCeEEEECCCcchHHHHHh--h-CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 45 IRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La--~-~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.++|+|+|||||.++...+ . ..|+|+|+.+..+ +...+.+.+.+.++.+.+.|..+.. +.||.++.+--.-.+
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~~ 121 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGSQ 121 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCccc
Confidence 3479999999998765443 3 4799999998655 4444556666678899999887764 568988886422212
Q ss_pred c--ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 122 L--QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 ~--~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
. .| ..++..+.+.- -.+.+..... ..+-++...+..|+.+...
T Consensus 122 ~rhaD-r~Fl~~Ale~s----~vVYsiH~a~--------~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 122 RRHAD-RPFLLKALEIS----DVVYSIHKAG--------SRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cccCC-HHHHHHHHHhh----heEEEeeccc--------cHHHHHHHHHhcCCeEEEE
Confidence 1 33 34566555543 2333322211 2345677888888866554
No 182
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.82 E-value=8.9e-05 Score=71.52 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=59.7
Q ss_pred eEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEec-------CccCCCCCCCccEEEec
Q 013393 47 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-------TKRLPYPSRSFELAHCS 115 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d-------~~~lp~~~~sFDlI~~~ 115 (444)
.+||+|||+|..+..++. ..++++|+++..+.-+. +.|+......++.+.. ....+.+.++.|+++|+
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEecccccccccccccccCceeEEecC
Confidence 699999999998888876 35666666654443222 2222223333333331 22233457899999997
Q ss_pred ccccccccc--------------------------HHHHHHHHHhhcCCCeEEEEEcC
Q 013393 116 RCRIDWLQR--------------------------DGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 116 ~~~l~~~~d--------------------------~~~~L~ei~rvLkPGG~lvis~p 147 (444)
--.+.. +| .-.++.-+-|.|+|||.+.+...
T Consensus 230 PPYI~~-dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 230 PPYIRK-DDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred CCcccc-cchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 422221 11 11356667789999999998644
No 183
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.81 E-value=4.5e-05 Score=80.34 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=73.8
Q ss_pred HHHHHHHhhcCCCC--CCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC-CcEEE
Q 013393 24 YILALARMLKFPSD--KLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLG 95 (444)
Q Consensus 24 y~~~l~~~l~~~~~--~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~ 95 (444)
|++....|+..... ..+++. +|||++||.|.=+.++++. .+++.|+++.-+...+ +.....|. ++.+.
T Consensus 94 yvQd~sS~l~~~~L~~~~~pg~---~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~ 169 (470)
T PRK11933 94 YIQEASSMLPVAALFADDNAPQ---RVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALT 169 (470)
T ss_pred EEECHHHHHHHHHhccCCCCCC---EEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEE
Confidence 44555555543211 334444 8999999999888777762 4677777664433222 22333354 44566
Q ss_pred EecCccCC-CCCCCccEEE----eccccccccccH------------------HHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 96 VLGTKRLP-YPSRSFELAH----CSRCRIDWLQRD------------------GILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 96 ~~d~~~lp-~~~~sFDlI~----~~~~~l~~~~d~------------------~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
..|...++ ...+.||.|+ |+.. ..+-.++ .++|.++.+.|||||+++.++=..
T Consensus 170 ~~D~~~~~~~~~~~fD~ILvDaPCSG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 170 HFDGRVFGAALPETFDAILLDAPCSGE-GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred eCchhhhhhhchhhcCeEEEcCCCCCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 66766543 2246799999 5531 1111111 368999999999999999876543
No 184
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.79 E-value=0.00012 Score=65.85 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=75.8
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC-----CCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp-----~~~~sFDlI~~~~~~l~~ 121 (444)
-||++|.|||.++..++++++.--++..++.+..-...-.+....+.+..+|+..+. +.+..||.|+|..-++.+
T Consensus 51 pVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~ 130 (194)
T COG3963 51 PVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNF 130 (194)
T ss_pred eeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccccccC
Confidence 699999999999999999876666666666666666666666667777777765553 556789999997654554
Q ss_pred cccH-HHHHHHHHhhcCCCeEEEEEc
Q 013393 122 LQRD-GILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 122 ~~d~-~~~L~ei~rvLkPGG~lvis~ 146 (444)
.... -++++++...|++||-++.-.
T Consensus 131 P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 131 PMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 3333 378999999999999998643
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.75 E-value=0.00023 Score=65.64 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=72.2
Q ss_pred eEEEECCCcchHHHHHhh--CC-----------ceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccE
Q 013393 47 NVLDVGCGVASFGAYLLS--HD-----------IIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFEL 111 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~--~~-----------V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDl 111 (444)
.|||--||+|.+....+. .. ++|.|+++..++.+..+ +...+. .+.+...|+..+++.++++|.
T Consensus 31 ~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N-~~~ag~~~~i~~~~~D~~~l~~~~~~~d~ 109 (179)
T PF01170_consen 31 VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN-LKAAGVEDYIDFIQWDARELPLPDGSVDA 109 (179)
T ss_dssp -EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH-HHHTT-CGGEEEEE--GGGGGGTTSBSCE
T ss_pred EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH-HHhcccCCceEEEecchhhcccccCCCCE
Confidence 899999999998866543 33 45888888777555543 333343 457778899999977889999
Q ss_pred EEeccccccccc---c----HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 112 AHCSRCRIDWLQ---R----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 112 I~~~~~~l~~~~---d----~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
|+|+.=...-.. + ...+++++.++|++...++++... .+.+.++..+|+....
T Consensus 110 IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~-------------~~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 110 IVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNR-------------ELEKALGLKGWRKRKL 169 (179)
T ss_dssp EEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCC-------------CHHHHHTSTTSEEEEE
T ss_pred EEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH-------------HHHHHhcchhhceEEE
Confidence 999631110011 1 136789999999995555554322 3455666666665544
No 186
>PLN02823 spermine synthase
Probab=97.75 E-value=0.00034 Score=70.78 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=65.9
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc---------CCCcEEEEecCcc-CCCCCCCc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSF 109 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~---------~~~~~~~~~d~~~-lp~~~~sF 109 (444)
++++||.||+|.|..+.++++. .++.+|+++ ..++.|++. ..++.+...|... +...+++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~-----~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ-----EVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH-----HHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 4568999999999999988874 345555554 455555543 2456677777544 33345789
Q ss_pred cEEEecccccccc------ccHHHHHH-HHHhhcCCCeEEEEEcCC
Q 013393 110 ELAHCSRCRIDWL------QRDGILLL-ELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 110 DlI~~~~~~l~~~------~d~~~~L~-ei~rvLkPGG~lvis~p~ 148 (444)
|+|++-. .-+.. ---..+++ .+.+.|+|||.+++...+
T Consensus 178 DvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 178 DVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred cEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 9999753 11110 01236787 899999999999886443
No 187
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.71 E-value=9.3e-05 Score=76.21 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=67.0
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||++||+|.++..++.. .|+++|+++..+..+..+. +.++. +..+...|...+....+.||+|++.-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~-~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNL-ELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 37999999999999998752 4788888876654444333 33333 34566777655322145799999754
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+ .....++..+.+.+++||.+.++...
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 1 33457888878889999999998543
No 188
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.71 E-value=4.7e-05 Score=73.89 Aligned_cols=134 Identities=16% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCeEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHH--------------HHHHH-cCC-------------Cc-
Q 013393 45 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQI--------------QFALE-RGI-------------PS- 92 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i--------------~~a~e-~~~-------------~~- 92 (444)
+.++||||||+-.+-..-+. ..|+..|.++....+... +...+ .|. .+
T Consensus 57 g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk 136 (256)
T PF01234_consen 57 GETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVK 136 (256)
T ss_dssp EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEE
T ss_pred CCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhc
Confidence 45899999999654322222 256677766544332111 11101 011 01
Q ss_pred EEEEecCccC-CCCC-----CCccEEEeccccccccccH---HHHHHHHHhhcCCCeEEEEEcCCCCCCC-------hhh
Q 013393 93 TLGVLGTKRL-PYPS-----RSFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPEAYAHD-------PEN 156 (444)
Q Consensus 93 ~~~~~d~~~l-p~~~-----~sFDlI~~~~~~l~~~~d~---~~~L~ei~rvLkPGG~lvis~p~~~~~~-------~~~ 156 (444)
.+..+|..+. |+.+ +.||+|++..|+-.-.+|. ..+++++.++|||||.|++...-..... +..
T Consensus 137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l 216 (256)
T PF01234_consen 137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCL 216 (256)
T ss_dssp EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE--
T ss_pred eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccc
Confidence 2445665443 2322 3599999999844444454 4789999999999999998642211000 000
Q ss_pred HHHHHHHHHHHHhcCeEEEeee
Q 013393 157 RRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 157 ~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.-.-+.+.+.++++||.+...+
T Consensus 217 ~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 217 PLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp -B-HHHHHHHHHHTTEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCEEEecc
Confidence 0122467888999999887765
No 189
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.67 E-value=9.7e-05 Score=71.54 Aligned_cols=97 Identities=14% Similarity=0.074 Sum_probs=64.8
Q ss_pred CCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCcc-CCC------CCCCc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR-LPY------PSRSF 109 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~-lp~------~~~sF 109 (444)
++++||+||+++|.-+..++.. .++++|..+.....+...+ ++.| ..+.+..+++.+ ++- ..++|
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~-~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI-QKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 4568999999999888888763 5777877764433333222 2233 356666676433 221 13689
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
|+|+.-. .......++..+.+.|+|||.+++-
T Consensus 158 D~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 158 DFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 9999643 2345568888899999999998873
No 190
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.65 E-value=0.00082 Score=62.51 Aligned_cols=133 Identities=14% Similarity=0.041 Sum_probs=74.1
Q ss_pred cCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHH
Q 013393 4 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHEN 80 (444)
Q Consensus 4 ~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a 80 (444)
.|-.+..|.++... ...+...+.+-+++.. .+ .+ .++||++||+|.++..++.+ .|+++|.++..+...
T Consensus 17 kg~~l~~p~~~~~r-pt~~~vrea~f~~l~~---~~-~g---~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~ 88 (189)
T TIGR00095 17 GGRLLKLPPGGSTR-PTTRVVRELFFNILRP---EI-QG---AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTL 88 (189)
T ss_pred CCcccCCCCCCCCC-CchHHHHHHHHHHHHH---hc-CC---CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHH
Confidence 34555666654322 2223333344444432 11 12 38999999999999999885 577888777555444
Q ss_pred HHHHHHHcCC--CcEEEEecCcc-CC-C-CC-CCccEEEeccccccccccHHHHHHHHH--hhcCCCeEEEEEcC
Q 013393 81 QIQFALERGI--PSTLGVLGTKR-LP-Y-PS-RSFELAHCSRCRIDWLQRDGILLLELD--RLLRPGGYFVYSSP 147 (444)
Q Consensus 81 ~i~~a~e~~~--~~~~~~~d~~~-lp-~-~~-~sFDlI~~~~~~l~~~~d~~~~L~ei~--rvLkPGG~lvis~p 147 (444)
+.+ +...+. ++.+...|..+ +. + .. ..||+|+.--- .. ......++..+. .+|+++|.+++..+
T Consensus 89 ~~N-~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPP-y~-~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 89 KEN-LALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPP-FF-NGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHH-HHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcC-CC-CCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 332 333333 45677777633 22 1 12 24788776431 11 122344555443 47999999888543
No 191
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.64 E-value=0.00038 Score=67.61 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=46.0
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc---CCCcEEEEecCccCCCCCCCcc---EEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFE---LAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~lp~~~~sFD---lI~~~~ 116 (444)
.+|||+|||+|.++..++++ .++++|+++..+ +.++++ ..++.+...|+..++++ +|| +|+++.
T Consensus 31 ~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~-----~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 31 DVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLA-----EILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNL 102 (253)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHH-----HHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcC
Confidence 48999999999999999884 577777766544 333332 34677888888887765 466 777654
No 192
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.62 E-value=0.00018 Score=71.48 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=49.9
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
.+|||||||+|.++..+++. .++++|+++..+..+..+++... ..++.+...|+...+++ .||.|+++.
T Consensus 38 ~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNl 109 (294)
T PTZ00338 38 DTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANV 109 (294)
T ss_pred CEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecC
Confidence 38999999999999999874 57888888766555443333221 24678888887776653 689998764
No 193
>PRK04148 hypothetical protein; Provisional
Probab=97.60 E-value=0.00056 Score=59.87 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=58.4
Q ss_pred CCeEEEECCCcch-HHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC-CCCccEEEecccccccc
Q 013393 45 IRNVLDVGCGVAS-FGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWL 122 (444)
Q Consensus 45 ~~rVLDVGCGtG~-~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~-~~sFDlI~~~~~~l~~~ 122 (444)
.++|||||||+|. ++..|++. |.++.++|+++..++.+++.+. .+...|..+-++. -+.+|+|++.+. .
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirp----p 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRP----P 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCC----C
Confidence 3589999999995 88888875 2344444555566677776653 4556665443322 357999998874 3
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEE
Q 013393 123 QRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis 145 (444)
++....+.++.+-+. .-+++.
T Consensus 88 ~el~~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 88 RDLQPFILELAKKIN--VPLIIK 108 (134)
T ss_pred HHHHHHHHHHHHHcC--CCEEEE
Confidence 455667777777554 445553
No 194
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00058 Score=67.34 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=70.4
Q ss_pred CCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc---------CCCcEEEEecCccC-CCCCCC
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-PYPSRS 108 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~---------~~~~~~~~~d~~~l-p~~~~s 108 (444)
+++++||=||-|.|.+++.+++. +++.+||. ++.++.+++. .+.+.+...|..++ .-..++
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID-----~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~ 149 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEID-----PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEK 149 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcC-----HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCc
Confidence 34469999999999999999985 45555554 4555666654 13456666665443 222348
Q ss_pred ccEEEeccccccccc----cHHHHHHHHHhhcCCCeEEEEEcCCCCCCC
Q 013393 109 FELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHD 153 (444)
Q Consensus 109 FDlI~~~~~~l~~~~----d~~~~L~ei~rvLkPGG~lvis~p~~~~~~ 153 (444)
||+|++-.. =+--+ .-..+++.+.+.|+++|.++..+-+++...
T Consensus 150 fDvIi~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 150 FDVIIVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CCEEEEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 999997531 11101 125899999999999999999865555443
No 195
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.54 E-value=0.00064 Score=62.95 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=72.3
Q ss_pred eEEEECCCcchHHHHHh----hCCceEEEcCcccchHHHHHHHHHcCCC-cEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La----~~~V~gvdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
+++|||+|.|.-+..|+ +..++-+|-...-++ -....+++-+.+ +.+....++. +....+||+|++...
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh----
Confidence 79999999997665554 235566655543221 111233344554 7777777777 444678999998762
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
.....++.-+...|++||.+++.--. .....-.+.....+..+.+....
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~KG~------~~~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYKGP------DAEEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEESS--------HHHHHTHHHHHHCCCEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEcCC------ChHHHHHHHHhHHHHhCCEEeee
Confidence 45678999999999999998874221 12223344555666666665544
No 196
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.49 E-value=0.00031 Score=65.90 Aligned_cols=119 Identities=15% Similarity=0.122 Sum_probs=70.7
Q ss_pred eecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh--C--CceEEEcCcccchHHHHH
Q 013393 8 INFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--H--DIIAMSLAPNDVHENQIQ 83 (444)
Q Consensus 8 ~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~--~--~V~gvdis~~dis~a~i~ 83 (444)
|.+.-.-..|..+...-...+.+.+ +++. +|||+-||.|.|+..+++ + .|+++|+.|..+... .+
T Consensus 75 f~~D~~kvyfs~rl~~Er~Ri~~~v-------~~~e---~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L-~~ 143 (200)
T PF02475_consen 75 FKVDLSKVYFSPRLSTERRRIANLV-------KPGE---VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYL-KE 143 (200)
T ss_dssp EEEETTTS---GGGHHHHHHHHTC---------TT----EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHH-HH
T ss_pred EEEccceEEEccccHHHHHHHHhcC-------Ccce---EEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHH-HH
Confidence 3334445666666655445555443 2333 899999999999999987 2 589999998665444 34
Q ss_pred HHHHcCCC--cEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEE
Q 013393 84 FALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 143 (444)
Q Consensus 84 ~a~e~~~~--~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lv 143 (444)
.++.++.. +.....|...+.. .+.||-|+++. .+ .-..+|..+.+++|+||.+-
T Consensus 144 Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l--p~---~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 144 NIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL--PE---SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHTT-TTTEEEEES-GGG----TT-EEEEEE----TS---SGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC--hH---HHHHHHHHHHHHhcCCcEEE
Confidence 44444443 4566778776654 68899999765 22 22358888999999999874
No 197
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.43 E-value=0.0044 Score=62.35 Aligned_cols=115 Identities=11% Similarity=0.097 Sum_probs=71.0
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.++||+||++|.|+..|+++ .|+++|..+.+. .......+.....|..+...+.+.+|.++|-.. .
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~-------~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e 280 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ-------SLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----E 280 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH-------hhhCCCCEEEEeccCcccCCCCCCCCEEEEecc-----c
Confidence 48999999999999999987 477777544321 112244566666664443322578999998762 4
Q ss_pred cHHHHHHHHHhhcCCC--eEEEEEcCCCC-CCChhhHHHHHHHHHHHHhcCe
Q 013393 124 RDGILLLELDRLLRPG--GYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCW 172 (444)
Q Consensus 124 d~~~~L~ei~rvLkPG--G~lvis~p~~~-~~~~~~~~~~~~l~~l~~~~gf 172 (444)
.+.+...-+.+.|..| ..+++.-.-+. .+.++-......+.+.+.+.|.
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~ 332 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGI 332 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 5667777777777766 35555433322 2223333344456666666664
No 198
>PRK00536 speE spermidine synthase; Provisional
Probab=97.42 E-value=0.0015 Score=63.83 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=72.8
Q ss_pred CCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc---------CCCcEEEEecCccCCCCCCCcc
Q 013393 42 GGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRLPYPSRSFE 110 (444)
Q Consensus 42 g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~---------~~~~~~~~~d~~~lp~~~~sFD 110 (444)
.+++++||=+|.|.|..++.+++. +|+-+|++ +..++.+++. .+++.+.. ... .-..++||
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID-----~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fD 141 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQAD-----EKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYD 141 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECC-----HHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCC
Confidence 356789999999999999999996 35555544 4555555552 23333332 111 11236899
Q ss_pred EEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeE
Q 013393 111 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 111 lI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~ 173 (444)
+|++-. . ....+++.+.|.|+|||.++.+..+++... .....+.+-+++ .|.
T Consensus 142 VIIvDs-~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~----~~~~~i~~~l~~-~F~ 193 (262)
T PRK00536 142 LIICLQ-E-----PDIHKIDGLKRMLKEDGVFISVAKHPLLEH----VSMQNALKNMGD-FFS 193 (262)
T ss_pred EEEEcC-C-----CChHHHHHHHHhcCCCcEEEECCCCcccCH----HHHHHHHHHHHh-hCC
Confidence 999653 1 336788999999999999999876665432 223344444444 454
No 199
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.41 E-value=7.5e-05 Score=59.86 Aligned_cols=91 Identities=24% Similarity=0.309 Sum_probs=60.7
Q ss_pred EecccccchhhhhccCCCceEEEeccccCC-CchhHHhhccccc---cccccccCCCCCCcccchhhccccccccccCCC
Q 013393 293 MDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIG---TVHDWCESFSTYPRTYDLLHAWKVFSEIEERGC 368 (444)
Q Consensus 293 mDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~rg~~~---~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c 368 (444)
+|+.++.|-+++.|.+.+. .+|+-++.. ..+...-++.--. ..+.=-+.++.-+.+||++++.++|..+ .
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~----~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL----E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS----S
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec----c
Confidence 5888999999999987622 234444432 3344333333211 3333355566667999999999999854 3
Q ss_pred ChhhhhhhhcccccCCcEEEE
Q 013393 369 SFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 369 ~~~~~~~e~drilrp~g~~~~ 389 (444)
+...++-|+-|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 689999999999999999986
No 200
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.0038 Score=60.44 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=83.7
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHH----c--CCCcE
Q 013393 25 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALE----R--GIPST 93 (444)
Q Consensus 25 ~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e----~--~~~~~ 93 (444)
+..+..++. +.||. +||+-|+|+|+++.++++. .+...|+ ++...+.|++ . +.++.
T Consensus 94 ia~I~~~L~-----i~PGs---vV~EsGTGSGSlShaiaraV~ptGhl~tfef-----H~~Ra~ka~eeFr~hgi~~~vt 160 (314)
T KOG2915|consen 94 IAMILSMLE-----IRPGS---VVLESGTGSGSLSHAIARAVAPTGHLYTFEF-----HETRAEKALEEFREHGIGDNVT 160 (314)
T ss_pred HHHHHHHhc-----CCCCC---EEEecCCCcchHHHHHHHhhCcCcceEEEEe-----cHHHHHHHHHHHHHhCCCcceE
Confidence 445556664 45666 9999999999999999874 4566666 4444444433 2 55778
Q ss_pred EEEecCccCCCC--CCCccEEEeccccccccccHHHHHHHHHhhcCCCe-EEEEEcCCCCCCChhhHHHHHHHHHHHHhc
Q 013393 94 LGVLGTKRLPYP--SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSM 170 (444)
Q Consensus 94 ~~~~d~~~lp~~--~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG-~lvis~p~~~~~~~~~~~~~~~l~~l~~~~ 170 (444)
+..-|....-|. +..+|.|+.-. +.+..++.-++.+||.+| +|+--.|. .++-+.-.+++.+.
T Consensus 161 ~~hrDVc~~GF~~ks~~aDaVFLDl------PaPw~AiPha~~~lk~~g~r~csFSPC--------IEQvqrtce~l~~~ 226 (314)
T KOG2915|consen 161 VTHRDVCGSGFLIKSLKADAVFLDL------PAPWEAIPHAAKILKDEGGRLCSFSPC--------IEQVQRTCEALRSL 226 (314)
T ss_pred EEEeecccCCccccccccceEEEcC------CChhhhhhhhHHHhhhcCceEEeccHH--------HHHHHHHHHHHHhC
Confidence 888887776554 57799997433 555677888888999877 55543333 23334556677888
Q ss_pred CeEEEe
Q 013393 171 CWKIVS 176 (444)
Q Consensus 171 gf~~v~ 176 (444)
||..+.
T Consensus 227 gf~~i~ 232 (314)
T KOG2915|consen 227 GFIEIE 232 (314)
T ss_pred CCceEE
Confidence 996544
No 201
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.35 E-value=0.0018 Score=66.32 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=71.5
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccC-C-CC--------------CC
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-YP--------------SR 107 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~l-p-~~--------------~~ 107 (444)
+|||++||+|.++..+++. .|+++|+++.++..+.. .+...+. ++.+...|+.+. + +. ..
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~-N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY-NIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSY 287 (362)
T ss_pred eEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCC
Confidence 6999999999999988873 68899888877655553 3333444 577887776442 1 10 12
Q ss_pred CccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 108 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 108 sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+||+|+.--- ...-...+++.+.+ |++.++++..+ ...-+.+..+.+ ||++.....
T Consensus 288 ~~D~v~lDPP---R~G~~~~~l~~l~~---~~~ivyvSC~p--------~tlarDl~~L~~--gY~l~~v~~ 343 (362)
T PRK05031 288 NFSTIFVDPP---RAGLDDETLKLVQA---YERILYISCNP--------ETLCENLETLSQ--THKVERFAL 343 (362)
T ss_pred CCCEEEECCC---CCCCcHHHHHHHHc---cCCEEEEEeCH--------HHHHHHHHHHcC--CcEEEEEEE
Confidence 5899986431 11112345555544 78888887543 112234555543 887765543
No 202
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.32 E-value=0.00051 Score=70.50 Aligned_cols=137 Identities=12% Similarity=0.111 Sum_probs=85.0
Q ss_pred cCC-eeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccc
Q 013393 4 NGE-KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDV 77 (444)
Q Consensus 4 ~g~-~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~di 77 (444)
||. .|.+|..++.|.+-....-+.+.-.+-........+...-+|||+.||+|..+..++.+ .|++.|+++..+
T Consensus 3 EG~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av 82 (374)
T TIGR00308 3 EGKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAV 82 (374)
T ss_pred cceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH
Confidence 444 56667666677777766655543211000000011111237999999999999998864 478888888665
Q ss_pred hHHHHHHHHHcCC-CcEEEEecCccCC-CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 78 HENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 78 s~a~i~~a~e~~~-~~~~~~~d~~~lp-~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.....+ ++.++. ++.+...|+..+- ...+.||+|..-- + ..+..++..+.+.+++||.+.++.
T Consensus 83 ~~i~~N-~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP----f-Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 83 ESIKNN-VEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP----F-GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred HHHHHH-HHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC----C-CCcHHHHHHHHHhcccCCEEEEEe
Confidence 444433 333333 3566666655432 2235799998643 2 344579999999999999999974
No 203
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.30 E-value=0.0026 Score=62.65 Aligned_cols=127 Identities=20% Similarity=0.110 Sum_probs=70.2
Q ss_pred CCCCeEEEECCCcchHHHHHhhC-CceEEEcCcccchHHHHHHHHHc---CCCcEEE--Eec--CccCCCCCCCccEEEe
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER---GIPSTLG--VLG--TKRLPYPSRSFELAHC 114 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~-~V~gvdis~~dis~a~i~~a~e~---~~~~~~~--~~d--~~~lp~~~~sFDlI~~ 114 (444)
-.+++|||+|||+|...-.+.+. . ...++...|.++.+.+.++.. ..+.... ... ....++. ..|+|++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~ 108 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIA 108 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEE
Confidence 44568999999999654433331 0 112333344455555554432 1111100 001 1112232 3499999
Q ss_pred ccccccccccH--HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 115 SRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 115 ~~~~l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
++.+.+ +++. ..+++.+.+.+.+ ++++.+|.. +.+.+.-.++.+.+.+.|+.++..-.
T Consensus 109 s~~L~E-L~~~~r~~lv~~LW~~~~~--~LVlVEpGt----~~Gf~~i~~aR~~l~~~~~~v~APCp 168 (274)
T PF09243_consen 109 SYVLNE-LPSAARAELVRSLWNKTAP--VLVLVEPGT----PAGFRRIAEARDQLLEKGAHVVAPCP 168 (274)
T ss_pred ehhhhc-CCchHHHHHHHHHHHhccC--cEEEEcCCC----hHHHHHHHHHHHHHhhCCCceECCCc
Confidence 995444 4442 2566666666655 888887763 44555556778888888887776543
No 204
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.0016 Score=59.42 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=79.0
Q ss_pred CCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
+.-+||||||+|..+..|++. -..+.|++|... ++..+.|+.++..+.....|...- ...++.|+++.+.-.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 447999999999999888874 256788888644 555567777776666666663321 1237888888763111
Q ss_pred c--------------cc--ccH----HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 120 D--------------WL--QRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 120 ~--------------~~--~d~----~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
. |. .+. ++++.++-.+|.|.|.|++..-..+ .-.++..+++..||...
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--------~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN--------KPKEILKILEKKGYGVR 189 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc--------CHHHHHHHHhhccccee
Confidence 1 11 121 3678888899999999998643321 12356667888888543
No 205
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.27 E-value=0.0017 Score=66.84 Aligned_cols=106 Identities=19% Similarity=0.097 Sum_probs=73.6
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCcc-CC---CCCCCccEEEec
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKR-LP---YPSRSFELAHCS 115 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~-lp---~~~~sFDlI~~~ 115 (444)
.++|||+=|=||.++.+.+.. .|+++|+|...+.-+..++..+. .....+.+.|+-+ +. -...+||+|+.-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 348999999999999988873 78888888776655554444332 2245777887433 22 124589999983
Q ss_pred c--------ccccccccHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 116 R--------CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 116 ~--------~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
- ....-..+...++..+.++|+|||.+++++....
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 2 0111134566899999999999999999876543
No 206
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.27 E-value=0.00071 Score=69.04 Aligned_cols=115 Identities=12% Similarity=0.111 Sum_probs=69.5
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccC-C-------C---C-----CC
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-------Y---P-----SR 107 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~l-p-------~---~-----~~ 107 (444)
+|||+|||+|.++..|++. .|+++|+++.++..+.. .+...+. ++.+...|..++ + + . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~-n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQY-NIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 6999999999999988873 68888888877655553 3333444 577777776542 1 1 0 12
Q ss_pred CccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 108 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 108 sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.||+|+.--- -..-...++..+. +|++.++++..+ ...-+.+..+.+ +|++....
T Consensus 279 ~~d~v~lDPP---R~G~~~~~l~~l~---~~~~ivYvsC~p--------~tlaRDl~~L~~--~Y~l~~v~ 333 (353)
T TIGR02143 279 NCSTIFVDPP---RAGLDPDTCKLVQ---AYERILYISCNP--------ETLKANLEQLSE--THRVERFA 333 (353)
T ss_pred CCCEEEECCC---CCCCcHHHHHHHH---cCCcEEEEEcCH--------HHHHHHHHHHhc--CcEEEEEE
Confidence 3799886431 1111234555544 478999887543 122335555542 37665554
No 207
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.25 E-value=0.0016 Score=65.21 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=65.5
Q ss_pred CCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
....+|+|.|.|..+..++.. .+-++++....+.+++.+.+ ..+....+|.-+- .|. -|+|++-.++.||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~-~P~--~daI~mkWiLhdw- 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQD-TPK--GDAIWMKWILHDW- 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc----CCcceeccccccc-CCC--cCeEEEEeecccC-
Confidence 568999999999999988873 45566665544433332222 3355555553222 332 4699999976666
Q ss_pred ccH--HHHHHHHHhhcCCCeEEEEEcC
Q 013393 123 QRD--GILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 123 ~d~--~~~L~ei~rvLkPGG~lvis~p 147 (444)
.|. .++|+++...|+|||.+++.+.
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 444 4999999999999999999654
No 208
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.22 E-value=0.00084 Score=65.09 Aligned_cols=125 Identities=16% Similarity=0.200 Sum_probs=76.4
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc----CCCcEEEEecCccC-CCCCC-CccEEE
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRL-PYPSR-SFELAH 113 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~----~~~~~~~~~d~~~l-p~~~~-sFDlI~ 113 (444)
++++||=||-|.|..+..+++. .++.+|+++.-+.-+..-+.... ..++.+...|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 4669999999999999999874 46666666543322222122211 34677888875442 12233 899999
Q ss_pred ecccccccccc----HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeE
Q 013393 114 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 114 ~~~~~l~~~~d----~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~ 173 (444)
.-.. -+.... -..+++.+.+.|+|||.+++....++.. ......+.+.+++.+..
T Consensus 156 ~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~----~~~~~~i~~tl~~~F~~ 214 (246)
T PF01564_consen 156 VDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH----PELFKSILKTLRSVFPQ 214 (246)
T ss_dssp EESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT----HHHHHHHHHHHHTTSSE
T ss_pred EeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc----hHHHHHHHHHHHHhCCc
Confidence 7432 121111 2589999999999999999976443321 23345566666666653
No 209
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.14 E-value=0.0028 Score=59.92 Aligned_cols=133 Identities=14% Similarity=0.203 Sum_probs=84.1
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC-C--CCCCc
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y--PSRSF 109 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp-~--~~~sF 109 (444)
.+++|. +||-+|+.+|....++++ ..|.++++++... ...++.|++| .|+.-...|+..-. | --+..
T Consensus 70 ~ik~gs---kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R-~NIiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 70 PIKPGS---KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKR-PNIIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp S--TT----EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHS-TTEEEEES-TTSGGGGTTTS--E
T ss_pred CCCCCC---EEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccC-CceeeeeccCCChHHhhcccccc
Confidence 455665 899999999988888876 3688999999654 4444666665 45555566654311 1 13479
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCC-CChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~-~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
|+|++-- ......+.++.++...||+||.++++...... -.......|.+-.+.+++.+|+..+.-
T Consensus 145 DvI~~DV---aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i 211 (229)
T PF01269_consen 145 DVIFQDV---AQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQI 211 (229)
T ss_dssp EEEEEE----SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cEEEecC---CChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEe
Confidence 9999764 22233457788888999999999986432110 112233567777777787889887654
No 210
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.00025 Score=63.43 Aligned_cols=74 Identities=18% Similarity=0.397 Sum_probs=56.3
Q ss_pred CCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec-ceeEe
Q 013393 106 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD-QTVIW 184 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~-~~~~w 184 (444)
..+||.|+|+.|+ -+.+....++.-+.+.|+|.|..++..|.- .+....+.+..+..||.+...++ +..+|
T Consensus 101 q~tFDiIlaADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPRR-------g~sL~kF~de~~~~gf~v~l~enyde~iw 172 (201)
T KOG3201|consen 101 QHTFDIILAADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPRR-------GQSLQKFLDEVGTVGFTVCLEENYDEAIW 172 (201)
T ss_pred hCcccEEEeccch-hHHHHHHHHHHHHHHHhCcccceeEecCcc-------cchHHHHHHHHHhceeEEEecccHhHHHH
Confidence 4589999999984 445666789999999999999988876652 13355778888999998876554 44577
Q ss_pred ecc
Q 013393 185 AKP 187 (444)
Q Consensus 185 ~k~ 187 (444)
++.
T Consensus 173 qrh 175 (201)
T KOG3201|consen 173 QRH 175 (201)
T ss_pred HHH
Confidence 754
No 211
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.12 E-value=0.00063 Score=62.39 Aligned_cols=91 Identities=25% Similarity=0.311 Sum_probs=51.7
Q ss_pred CCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEec---------Ccc-CCCCCCCc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG---------TKR-LPYPSRSF 109 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d---------~~~-lp~~~~sF 109 (444)
..+|||+||++|.|+..++++ .|+|+|+.+.+.. ..+.....| ... ++-..+.|
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhHHHhhhhhccccccCc
Confidence 458999999999999999875 4788988876211 111111111 111 11112689
Q ss_pred cEEEecccccccc----ccH-------HHHHHHHHhhcCCCeEEEEEcC
Q 013393 110 ELAHCSRCRIDWL----QRD-------GILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 110 DlI~~~~~~l~~~----~d~-------~~~L~ei~rvLkPGG~lvis~p 147 (444)
|+|+|-.+ .... .+. ...+.-+...|+|||.+++-..
T Consensus 93 dlv~~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 93 DLVLSDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp SEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred ceeccccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 99998541 2211 111 1345555678999998887543
No 212
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.12 E-value=0.0077 Score=57.01 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=76.5
Q ss_pred CCeEEEECCCcchHHHHHh----hCCceEEEcCcccchHHHHH-HHHHcCCC-cEEEEecCccCCCCCCC-ccEEEeccc
Q 013393 45 IRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQ-FALERGIP-STLGVLGTKRLPYPSRS-FELAHCSRC 117 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La----~~~V~gvdis~~dis~a~i~-~a~e~~~~-~~~~~~d~~~lp~~~~s-FDlI~~~~~ 117 (444)
..+++|||+|.|.-+..|+ +.+++-+|-...- .+-++ ...+-+.+ +.+....++.+.-. .. ||+|.|...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk--~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKK--IAFLREVKKELGLENVEIVHGRAEEFGQE-KKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchH--HHHHHHHHHHhCCCCeEEehhhHhhcccc-cccCcEEEeehc
Confidence 4589999999997776655 2344444333321 12222 23344655 77777777776532 23 999998752
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.+...++.=+...+|+||.++.- +.........+.+......++.+....
T Consensus 145 -----a~L~~l~e~~~pllk~~g~~~~~------k~~~~~~e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 145 -----ASLNVLLELCLPLLKVGGGFLAY------KGLAGKDELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred -----cchHHHHHHHHHhcccCCcchhh------hHHhhhhhHHHHHHHHHhhcCcEEEEE
Confidence 56677888889999999988641 223334456677778888787766554
No 213
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.12 E-value=0.004 Score=62.58 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=61.4
Q ss_pred eEEEECCCcchHHHHHhhC--------CceEEEcCcccchHHHHHHHHHcCCCcEE--EEecCcc----CCC--CCCCcc
Q 013393 47 NVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKR----LPY--PSRSFE 110 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--------~V~gvdis~~dis~a~i~~a~e~~~~~~~--~~~d~~~----lp~--~~~sFD 110 (444)
+++|+|||+|.=+..|+++ .++++|||...+..+..+......+.+.+ ..+|..+ ++- ......
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r 158 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPT 158 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCcc
Confidence 7999999999766655441 25566666655544444333222233443 4555433 221 123467
Q ss_pred EEEeccccccccccH--HHHHHHHHh-hcCCCeEEEEEc
Q 013393 111 LAHCSRCRIDWLQRD--GILLLELDR-LLRPGGYFVYSS 146 (444)
Q Consensus 111 lI~~~~~~l~~~~d~--~~~L~ei~r-vLkPGG~lvis~ 146 (444)
+++.-.+.+...+.. ..+|+++.+ .|+|||.|++..
T Consensus 159 ~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 159 TILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred EEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 777765455544433 378999999 999999999965
No 214
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.07 E-value=0.0013 Score=65.23 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=57.1
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+.|||||||+|.++...+++ .|.+++.+.. . +-..+....+.. .+.++.+..++...| ++.|+|++-.+ .
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~M-A-qyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPM-G 253 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEM-A-QYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPM-G 253 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehhHH-H-HHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccc-h
Confidence 458999999999988777663 6777765531 1 111122222222 233444456666666 67999997542 2
Q ss_pred cccccH--HHHHHHHHhhcCCCeEEEE
Q 013393 120 DWLQRD--GILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 120 ~~~~d~--~~~L~ei~rvLkPGG~lvi 144 (444)
..+-+. -+..-.+.+.|||.|..+=
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 222222 2334455699999998873
No 215
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.06 E-value=0.0017 Score=64.78 Aligned_cols=119 Identities=16% Similarity=0.220 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh-----------CCceEEEcCcccchHHHHHHHHHc--
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------HDIIAMSLAPNDVHENQIQFALER-- 88 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~-----------~~V~gvdis~~dis~a~i~~a~e~-- 88 (444)
....+.+.+++.. ....+|||-.||+|.|...+.+ ..+.|.|+.+....-+..+.....
T Consensus 32 ~~i~~l~~~~~~~--------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 32 REIVDLMVKLLNP--------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhhhc--------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 3444556666632 2233799999999998877654 256777777655544444333221
Q ss_pred CCCcEEEEecCccCCC-C-CCCccEEEecccccc--cc------------------ccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 89 GIPSTLGVLGTKRLPY-P-SRSFELAHCSRCRID--WL------------------QRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 89 ~~~~~~~~~d~~~lp~-~-~~sFDlI~~~~~~l~--~~------------------~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.....+...|....+. . .+.||+|+++.-... |. ...-.++..+.+.|++||++.+..
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 1122455666443332 2 478999999631111 00 011258899999999999988877
Q ss_pred CC
Q 013393 147 PE 148 (444)
Q Consensus 147 p~ 148 (444)
|.
T Consensus 184 p~ 185 (311)
T PF02384_consen 184 PN 185 (311)
T ss_dssp EH
T ss_pred cc
Confidence 65
No 216
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0027 Score=66.07 Aligned_cols=98 Identities=22% Similarity=0.407 Sum_probs=72.6
Q ss_pred eEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc-
Q 013393 47 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL- 122 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~- 122 (444)
++|-+|||.-.+...+.+. .|+.+|+|+..+...++..+ ....-..+...|...+.|++++||.|+--.. ++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGt-lDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGT-LDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCc-ccccc
Confidence 7999999999999888874 67777777776655554444 2233456778899999999999999998653 3332
Q ss_pred ccH---------HHHHHHHHhhcCCCeEEEEEc
Q 013393 123 QRD---------GILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 123 ~d~---------~~~L~ei~rvLkPGG~lvis~ 146 (444)
.+. ...+.++.|+|+|||+++..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 221 256789999999999977543
No 217
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0084 Score=62.72 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=77.3
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC---CCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP---SRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~---~~sFDlI~~~~~~l~ 120 (444)
.++||+=||.|.|+..|+++ .|+|+++++..+..++.+.+.....++.|...+.+++.-. ...||.|+..--
T Consensus 295 ~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP--- 371 (432)
T COG2265 295 ERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP--- 371 (432)
T ss_pred CEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC---
Confidence 38999999999999999974 8999999998887666544444445688888887775422 357899986420
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEe
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~ 176 (444)
-.--...+++.+. -++|-..+++|..+ ....+=...+.+.|+++..
T Consensus 372 R~G~~~~~lk~l~-~~~p~~IvYVSCNP---------~TlaRDl~~L~~~gy~i~~ 417 (432)
T COG2265 372 RAGADREVLKQLA-KLKPKRIVYVSCNP---------ATLARDLAILASTGYEIER 417 (432)
T ss_pred CCCCCHHHHHHHH-hcCCCcEEEEeCCH---------HHHHHHHHHHHhCCeEEEE
Confidence 0001124555554 46788899997654 2222223445556765443
No 218
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0065 Score=56.93 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=61.0
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--------CCCCCccEE
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELA 112 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--------~~~~sFDlI 112 (444)
.+|+|+|+-.|+|+..+++. .|+++|+.|.+.. .++.+...|+..-+ +....+|+|
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV 115 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQGDITDEDTLEKLLEALGGAPVDVV 115 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEeeeccCccHHHHHHHHcCCCCcceE
Confidence 38999999999999999873 3899999998652 23566666654422 334457999
Q ss_pred Eeccc---cccccccH-------HHHHHHHHhhcCCCeEEEEEc
Q 013393 113 HCSRC---RIDWLQRD-------GILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 113 ~~~~~---~l~~~~d~-------~~~L~ei~rvLkPGG~lvis~ 146 (444)
.|-.. ..++..|. ..++.-+..+|+|||.|++..
T Consensus 116 ~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 116 LSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred EecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 97431 12222222 245666677999999999843
No 219
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.00043 Score=61.43 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=53.4
Q ss_pred CccCCCCCCCccEEEeccccccccc--cHHHHHHHHHhhcCCCeEEEEEcCCCCCC-----------------Chhh--H
Q 013393 99 TKRLPYPSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYAH-----------------DPEN--R 157 (444)
Q Consensus 99 ~~~lp~~~~sFDlI~~~~~~l~~~~--d~~~~L~ei~rvLkPGG~lvis~p~~~~~-----------------~~~~--~ 157 (444)
....+|.+++.|+|+|.+ +++|.. ....++++++|+|||||++-++.|..... .+.. .
T Consensus 38 s~e~~F~dns~d~iyaeH-vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v 116 (185)
T COG4627 38 SNESMFEDNSVDAIYAEH-VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIV 116 (185)
T ss_pred hhhccCCCcchHHHHHHH-HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHH
Confidence 455789999999999998 566643 33489999999999999999998874311 1211 1
Q ss_pred HHHHHHHHHHHhcCeEE
Q 013393 158 RIWNAMYDLLKSMCWKI 174 (444)
Q Consensus 158 ~~~~~l~~l~~~~gf~~ 174 (444)
...+.+.+.+.+.||.+
T Consensus 117 ~t~r~m~n~~m~~~~~~ 133 (185)
T COG4627 117 KTMRMMFNGFMDAGFVV 133 (185)
T ss_pred HHHHHHHHHHHhhhhee
Confidence 24456677777777743
No 220
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.96 E-value=0.0012 Score=65.25 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=66.9
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCcc-CC-C-CCCCccEEEecc-
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKR-LP-Y-PSRSFELAHCSR- 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~-lp-~-~~~sFDlI~~~~- 116 (444)
++|||+=|=||.|+.+.+.. .|+.+|.|...+..+..+.+... .....+...|+.+ +. . ..++||+|++--
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPP 204 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPP 204 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--S
T ss_pred CceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCC
Confidence 48999999999999987764 57788887776666665444433 1346777777533 21 1 246899999832
Q ss_pred ----ccccccccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 117 ----CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 117 ----~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
....-..+...++..+.++|+|||.+++++.+.
T Consensus 205 sF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 205 SFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp SEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 111123466789999999999999998766543
No 221
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0043 Score=58.16 Aligned_cols=109 Identities=18% Similarity=0.235 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhCCc---eEEEcCcccchHHHHHHHHHcCC----CcEE
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDI---IAMSLAPNDVHENQIQFALERGI----PSTL 94 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~~V---~gvdis~~dis~a~i~~a~e~~~----~~~~ 94 (444)
..+.+.+++.+. .+.+|||.||-|-|.....+.++.. +.++ .++...+..++.+. ++.+
T Consensus 88 tpiMha~A~ai~---------tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE-----~hp~V~krmr~~gw~ek~nVii 153 (271)
T KOG1709|consen 88 TPIMHALAEAIS---------TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIE-----AHPDVLKRMRDWGWREKENVII 153 (271)
T ss_pred hHHHHHHHHHHh---------hCCceEEEeccchHHHHHHHhhcCCcceEEEe-----cCHHHHHHHHhcccccccceEE
Confidence 345555555554 2334899999999988887776532 2222 33444444444432 3443
Q ss_pred EEecCcc-CC-CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 95 GVLGTKR-LP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 95 ~~~d~~~-lp-~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
...-.++ ++ .+++.||-|+--. .-++-+|...+.+.+.|+|||+|.|-+.
T Consensus 154 l~g~WeDvl~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 154 LEGRWEDVLNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred EecchHhhhccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 3332222 22 5688999999654 3355588889999999999999999873
No 222
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.94 E-value=0.0018 Score=59.89 Aligned_cols=135 Identities=19% Similarity=0.241 Sum_probs=76.0
Q ss_pred ccCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchH
Q 013393 3 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHE 79 (444)
Q Consensus 3 ~~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~ 79 (444)
+.|..+..|.+. ......++-.+.+-+++... .+ .+ .++||+-||||.++...+.+ .|+.+|.++..+..
T Consensus 8 ~kgr~l~~p~~~-~~RPT~drvrealFniL~~~--~~-~g---~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~ 80 (183)
T PF03602_consen 8 YKGRKLKTPKGD-NTRPTTDRVREALFNILQPR--NL-EG---ARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKI 80 (183)
T ss_dssp TTT-EEE-TT---TS-SSSHHHHHHHHHHHHCH---H-TT----EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHH
T ss_pred cCCCEecCCCCC-CcCCCcHHHHHHHHHHhccc--cc-CC---CeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHH
Confidence 456778888753 33333455555566666532 01 12 38999999999999988875 56777776654432
Q ss_pred HHHHHHHHcCC--CcEEEEecCcc-CC---CCCCCccEEEecccccccccc--HHHHHHHHH--hhcCCCeEEEEEcCC
Q 013393 80 NQIQFALERGI--PSTLGVLGTKR-LP---YPSRSFELAHCSRCRIDWLQR--DGILLLELD--RLLRPGGYFVYSSPE 148 (444)
Q Consensus 80 a~i~~a~e~~~--~~~~~~~d~~~-lp---~~~~sFDlI~~~~~~l~~~~d--~~~~L~ei~--rvLkPGG~lvis~p~ 148 (444)
.. +..+..+. ...+...|... ++ ....+||+|++-- +|... ...++..+. .+|+++|.+++....
T Consensus 81 i~-~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 81 IK-KNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HH-HHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred HH-HHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 22 22222233 35566666322 22 2467899999753 33333 267777776 799999999986543
No 223
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.93 E-value=0.0043 Score=66.72 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=62.2
Q ss_pred CCeEEEECCCcchHHHHHhhCC-------ceEEEcCcccchHHHHHHHHHc----C-CCcEEEEecCccC-----CCCCC
Q 013393 45 IRNVLDVGCGVASFGAYLLSHD-------IIAMSLAPNDVHENQIQFALER----G-IPSTLGVLGTKRL-----PYPSR 107 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~~-------V~gvdis~~dis~a~i~~a~e~----~-~~~~~~~~d~~~l-----p~~~~ 107 (444)
..+|||.|||+|.+...+++.. ....++.+.|+++..+..++.+ + ....+...|.... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 3489999999999988776521 1234555666666665555443 1 2233333332111 11125
Q ss_pred CccEEEeccccc--ccc-------------------------------------------ccHHHHH-HHHHhhcCCCeE
Q 013393 108 SFELAHCSRCRI--DWL-------------------------------------------QRDGILL-LELDRLLRPGGY 141 (444)
Q Consensus 108 sFDlI~~~~~~l--~~~-------------------------------------------~d~~~~L-~ei~rvLkPGG~ 141 (444)
.||+|+++-=.. ... .....++ ..+.+.|+|||+
T Consensus 112 ~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~ 191 (524)
T TIGR02987 112 LFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGY 191 (524)
T ss_pred cccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCCE
Confidence 799999973111 110 0011234 457899999999
Q ss_pred EEEEcCCCCCC
Q 013393 142 FVYSSPEAYAH 152 (444)
Q Consensus 142 lvis~p~~~~~ 152 (444)
+.+..|..+..
T Consensus 192 ~~~I~P~s~l~ 202 (524)
T TIGR02987 192 VSIISPASWLG 202 (524)
T ss_pred EEEEEChHHhc
Confidence 99988876543
No 224
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.0034 Score=64.18 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=72.6
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC-----C-ceEEEcCcccchHHHHHHHHHcCCC-cEEEEe
Q 013393 25 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----D-IIAMSLAPNDVHENQIQFALERGIP-STLGVL 97 (444)
Q Consensus 25 ~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~-V~gvdis~~dis~a~i~~a~e~~~~-~~~~~~ 97 (444)
++...+++....-+.++|. +|||+.++.|.=+.++++. . |++.|+++.-+. ...+..+..|.. +.....
T Consensus 140 vQd~sS~l~a~~L~p~pge---~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~-~l~~nl~RlG~~nv~~~~~ 215 (355)
T COG0144 140 VQDEASQLPALVLDPKPGE---RVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLK-RLRENLKRLGVRNVIVVNK 215 (355)
T ss_pred EcCHHHHHHHHHcCCCCcC---EEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHH-HHHHHHHHcCCCceEEEec
Confidence 3344455544333445554 8999999999877777663 1 467777664332 222333333554 456666
Q ss_pred cCccCC--CC-CCCccEEEe----cc-cccccccc----------------HHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 98 GTKRLP--YP-SRSFELAHC----SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 98 d~~~lp--~~-~~sFDlI~~----~~-~~l~~~~d----------------~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
|...++ .+ .++||.|.+ +. .++.-.++ ..++|..+.++|||||.++.++=+..
T Consensus 216 d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 216 DARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred ccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 765554 22 235999996 21 11211111 12689999999999999999875543
No 225
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=96.89 E-value=0.0033 Score=58.40 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccC-CCceEEEeccccCC-Cchh----HHhhccc--ccccc
Q 013393 267 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLK----IIYDRGL--IGTVH 338 (444)
Q Consensus 267 ~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~~-~~l~----~~~~rg~--~~~~~ 338 (444)
..|++.+-.-.... +.+.. -..++|+.++.|.+|.++.. .|- ..|+-++.. .-+. .+-+.|+ |-+++
T Consensus 27 ~~~~~~~~d~l~l~-~~l~~--g~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLAIA-PYLPG--GERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred HHHHHHHHHHHHHH-hhcCC--CCeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEe
Confidence 36776663222222 22443 35799999999998887653 232 356666653 3232 2333444 45566
Q ss_pred ccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhccceeEEeccccc
Q 013393 339 DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPR 418 (444)
Q Consensus 339 ~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~~~~~~~~~ 418 (444)
.-.+.+.. +.+||+|-+..+ .++.+++-++-|.|||||.+++-+......++..+++.+.|+..... +-+
T Consensus 102 ~d~~~~~~-~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 171 (187)
T PRK00107 102 GRAEEFGQ-EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVI-ELT 171 (187)
T ss_pred ccHhhCCC-CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeE-EEe
Confidence 66666665 779999987642 34788999999999999999999999999999999999999965321 111
Q ss_pred cCCCCCCCceEEEEEec
Q 013393 419 IDALSSSEERVLIAKKK 435 (444)
Q Consensus 419 ~~~~~~~~~~~l~~~k~ 435 (444)
-. .-+++..+.|.+|+
T Consensus 172 ~~-~~~~~~~~~~~~~~ 187 (187)
T PRK00107 172 LP-GLDGERHLVIIRKK 187 (187)
T ss_pred cC-CCCCcEEEEEEecC
Confidence 11 12234567777774
No 226
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.0068 Score=59.78 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=54.2
Q ss_pred CCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhH--------HHHHHHHHHHHhcCeEEEeee
Q 013393 107 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR--------RIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 107 ~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~--------~~~~~l~~l~~~~gf~~v~~~ 178 (444)
++||+|+..+ .+.-..+.-.++..+..+|||||+++=..|-.|...++.. -..+++..+++..||+++.++
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 4699998776 4555556668999999999999999977766554333211 245688999999999998877
Q ss_pred c
Q 013393 179 D 179 (444)
Q Consensus 179 ~ 179 (444)
.
T Consensus 337 ~ 337 (369)
T KOG2798|consen 337 G 337 (369)
T ss_pred e
Confidence 4
No 227
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0018 Score=57.03 Aligned_cols=85 Identities=13% Similarity=0.212 Sum_probs=58.6
Q ss_pred HHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHh--h-CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC
Q 013393 27 ALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP 103 (444)
Q Consensus 27 ~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La--~-~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp 103 (444)
.+..++.-..+++.. ++++|+|||.|-+..... + ..|+|+|+.|..+.... +.|.+...++.+.++|...+.
T Consensus 35 sM~~~Ih~TygdiEg----kkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle 109 (185)
T KOG3420|consen 35 SMLYTIHNTYGDIEG----KKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLE 109 (185)
T ss_pred HHHHHHHhhhccccC----cchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchh
Confidence 444555444444433 379999999997664332 2 47899999886653333 455666677788888888877
Q ss_pred CCCCCccEEEecc
Q 013393 104 YPSRSFELAHCSR 116 (444)
Q Consensus 104 ~~~~sFDlI~~~~ 116 (444)
+..+.||.++.+.
T Consensus 110 ~~~g~fDtaviNp 122 (185)
T KOG3420|consen 110 LKGGIFDTAVINP 122 (185)
T ss_pred ccCCeEeeEEecC
Confidence 7778899999864
No 228
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=96.77 E-value=0.00034 Score=61.95 Aligned_cols=96 Identities=24% Similarity=0.431 Sum_probs=66.9
Q ss_pred CceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhccccccccccccCCCCCCcccchhhcccccccccc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 365 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~ 365 (444)
..--+|+|+.++.|.++..|.+.+. +|+-++.. ..+.. +-....-++-.++ .--+++||+|.+.++|..+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~-~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDP-PFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECHTH-HCHSSSEEEEEEESSGGGSS-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhh-hccccchhhHhhHHHHhhcc-
Confidence 4455999999999999999987665 45544432 22222 2222222211122 12368999999999999554
Q ss_pred CCCChhhhhhhhcccccCCcEEEEeccH
Q 013393 366 RGCSFEDLLIEMDRMLRPEGFVIIRDKS 393 (444)
Q Consensus 366 ~~c~~~~~~~e~drilrp~g~~~~rd~~ 393 (444)
+...+|-+|=|+|+|||++++.+..
T Consensus 93 ---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4899999999999999999998764
No 229
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.77 E-value=0.0037 Score=57.81 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=62.5
Q ss_pred CCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
+.++|||+|+|+|..+..-+.. .|+..|+.| ....+..-.+..++..+.+...|... .+..||+|+.+..+..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P-~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDP-WLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCCh-HHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 3469999999999877766553 567777775 33333333455567666666665443 4578999999884333
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+ ..-.+++. +.+.|+..|.-++...+
T Consensus 155 ~-~~a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 155 H-TEADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred c-hHHHHHHH-HHHHHHhCCCEEEEeCC
Confidence 2 33446666 66666666655554433
No 230
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.77 E-value=0.0025 Score=61.70 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=52.7
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh--CCceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEEEe
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHC 114 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI~~ 114 (444)
.+++.. .||+||.|||.++..|++ +.|+++++++.++.+-.......- .....+..+|....++| .||.+++
T Consensus 55 ~~k~tD---~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVs 129 (315)
T KOG0820|consen 55 DLKPTD---VVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVS 129 (315)
T ss_pred CCCCCC---EEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeec
Confidence 444544 999999999999999988 479999999988765553332111 12356677787776655 6999997
Q ss_pred cc
Q 013393 115 SR 116 (444)
Q Consensus 115 ~~ 116 (444)
+.
T Consensus 130 Nl 131 (315)
T KOG0820|consen 130 NL 131 (315)
T ss_pred cC
Confidence 53
No 231
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.0059 Score=59.35 Aligned_cols=92 Identities=17% Similarity=0.149 Sum_probs=60.8
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCC
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP 91 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~ 91 (444)
|++|-..-.- ++.+.+.... .+ ..+|||||+|.|.++..|+++ .|+++++++..+......++ ...+
T Consensus 9 GQnFL~d~~v-~~kIv~~a~~-----~~---~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n 77 (259)
T COG0030 9 GQNFLIDKNV-IDKIVEAANI-----SP---GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDN 77 (259)
T ss_pred ccccccCHHH-HHHHHHhcCC-----CC---CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccc
Confidence 5555554443 4555555432 22 338999999999999999985 68888887754322221111 2456
Q ss_pred cEEEEecCccCCCCCC-CccEEEecc
Q 013393 92 STLGVLGTKRLPYPSR-SFELAHCSR 116 (444)
Q Consensus 92 ~~~~~~d~~~lp~~~~-sFDlI~~~~ 116 (444)
..+...|+...++++- .++.|+++.
T Consensus 78 ~~vi~~DaLk~d~~~l~~~~~vVaNl 103 (259)
T COG0030 78 LTVINGDALKFDFPSLAQPYKVVANL 103 (259)
T ss_pred eEEEeCchhcCcchhhcCCCEEEEcC
Confidence 7888889888888743 688998763
No 232
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.70 E-value=0.018 Score=58.18 Aligned_cols=141 Identities=14% Similarity=0.083 Sum_probs=91.7
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI 90 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~ 90 (444)
-.+|..+...=...++++.. +|. +|||.=||.|-|+..++.. .|+++|+.|..+.-.+. .++.++.
T Consensus 168 Kv~Fsprl~~ER~Rva~~v~-------~GE---~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~e-Ni~LN~v 236 (341)
T COG2520 168 KVYFSPRLSTERARVAELVK-------EGE---TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKE-NIRLNKV 236 (341)
T ss_pred HeEECCCchHHHHHHHhhhc-------CCC---EEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHH-HHHhcCc
Confidence 34555555433334444442 233 8999999999999998874 38899999876644443 3333433
Q ss_pred C--cEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHH
Q 013393 91 P--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK 168 (444)
Q Consensus 91 ~--~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~ 168 (444)
. +....+|....+...+.||-|++.. ..+-..++..+.+.+++||.+-+.......... ......+...+.
T Consensus 237 ~~~v~~i~gD~rev~~~~~~aDrIim~~-----p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~--~~~~~~i~~~~~ 309 (341)
T COG2520 237 EGRVEPILGDAREVAPELGVADRIIMGL-----PKSAHEFLPLALELLKDGGIIHYYEFVPEDDIE--ERPEKRIKSAAR 309 (341)
T ss_pred cceeeEEeccHHHhhhccccCCEEEeCC-----CCcchhhHHHHHHHhhcCcEEEEEeccchhhcc--cchHHHHHHHHh
Confidence 2 5567888877765558899999765 234457888999999999999885433211110 013456777777
Q ss_pred hcCe
Q 013393 169 SMCW 172 (444)
Q Consensus 169 ~~gf 172 (444)
+.|.
T Consensus 310 ~~~~ 313 (341)
T COG2520 310 KGGY 313 (341)
T ss_pred hccC
Confidence 7765
No 233
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.65 E-value=0.007 Score=57.05 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=51.4
Q ss_pred eEEEECCCcchHHHHHhh----CCceEEEcCcccchHHH--HHHHHH----cCC---CcEEEEecCccCCCC---CCCcc
Q 013393 47 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQ--IQFALE----RGI---PSTLGVLGTKRLPYP---SRSFE 110 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~--i~~a~e----~~~---~~~~~~~d~~~lp~~---~~sFD 110 (444)
..+|+|||.|......+- +..+|+++.+.-...+. .+..++ .+. ++.+..+|+.+.++. -...|
T Consensus 45 vF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~Ad 124 (205)
T PF08123_consen 45 VFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSDAD 124 (205)
T ss_dssp EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC-S
T ss_pred EEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcCCC
Confidence 899999999976554432 24789999875332222 111111 122 334444554332211 03469
Q ss_pred EEEeccccccccccHHHHHHHHHhhcCCCeEEEE
Q 013393 111 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 111 lI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvi 144 (444)
+|+++.. .+.++....|.+...-||||-+++-
T Consensus 125 vVf~Nn~--~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 125 VVFVNNT--CFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EEEE--T--TT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred EEEEecc--ccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 9999873 3446677778888899999988763
No 234
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.58 E-value=0.023 Score=53.93 Aligned_cols=96 Identities=18% Similarity=0.153 Sum_probs=64.6
Q ss_pred CCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc-CC-----CCCCCccE
Q 013393 45 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-----YPSRSFEL 111 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp-----~~~~sFDl 111 (444)
+++.||||.=||.-+..++. ..|+++|+.+....-. .++.+..+. .+.+.+..+.+ ++ .+.++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 34899999989865555543 3788998887654433 233333343 34555554322 21 35689999
Q ss_pred EEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 112 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 112 I~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
++. =++-.+...++.++.++||+||.+++-
T Consensus 153 aFv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 983 445556668999999999999999983
No 235
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.076 Score=50.75 Aligned_cols=125 Identities=17% Similarity=0.256 Sum_probs=82.0
Q ss_pred CCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEE-EEecCccCC---CCCCCccEEEecc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTL-GVLGTKRLP---YPSRSFELAHCSR 116 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~-~~~d~~~lp---~~~~sFDlI~~~~ 116 (444)
+.+++||+|+-||.|+..++++ .|+++|+.-.+++....+ .+.+.. ...++..+. +. +..|+|+|--
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 3458999999999999999985 688998887766555422 232222 222233322 22 3678999865
Q ss_pred ccccccccHHHHHHHHHhhcCCCeEEEEEcCCCC------------CCCh-hhHHHHHHHHHHHHhcCeEEEeee
Q 013393 117 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY------------AHDP-ENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 117 ~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~------------~~~~-~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
+ + -.....|..+..+++|+|.++.-..+-+ -+++ .....-..+.+.++..||.+....
T Consensus 153 S---F-ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 153 S---F-ISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred e---h-hhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 4 3 2456799999999999998886443322 1122 223355688888999999876553
No 236
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.24 E-value=0.07 Score=49.36 Aligned_cols=137 Identities=20% Similarity=0.173 Sum_probs=79.0
Q ss_pred ccCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchH
Q 013393 3 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHE 79 (444)
Q Consensus 3 ~~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~ 79 (444)
+.|..+.+|.+ .......++-.+.+=+++... . -...++||+=+|+|.++...+.+ .++.+|.+......
T Consensus 9 ~kgr~L~~p~~-~~~RPT~drVREalFNil~~~--~----i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~ 81 (187)
T COG0742 9 YKGRKLKTPDG-PGTRPTTDRVREALFNILAPD--E----IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKI 81 (187)
T ss_pred ccCCcccCCCC-CCcCCCchHHHHHHHHhcccc--c----cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHH
Confidence 45677888875 334444455555555666421 1 22338999999999999999886 46666666543322
Q ss_pred HHHHHHHHcC--CCcEEEEecCccC-CCCCC--CccEEEeccccccc-cccHHHHHHH--HHhhcCCCeEEEEEcCC
Q 013393 80 NQIQFALERG--IPSTLGVLGTKRL-PYPSR--SFELAHCSRCRIDW-LQRDGILLLE--LDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 80 a~i~~a~e~~--~~~~~~~~d~~~l-p~~~~--sFDlI~~~~~~l~~-~~d~~~~L~e--i~rvLkPGG~lvis~p~ 148 (444)
... ..+..+ .+..+...|+... +.... +||+|+.-- -.+. .-+....+.. -...|+|+|.+++....
T Consensus 82 l~~-N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP-Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 82 LKE-NLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP-PYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred HHH-HHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC-CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 222 222223 4566666665532 22223 499999743 1221 1111222333 45789999999996443
No 237
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.23 E-value=0.012 Score=56.86 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=66.0
Q ss_pred ccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccc-cccccccccCCCCCCcccchhhcccccc
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~-~~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
+.......|+|+.++.|.++..|.... -.|+=+|- +.-+...-+++- +...+.-.|.++..+.+||+|-++..+.
T Consensus 38 l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~ 114 (251)
T PRK10258 38 LPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQ 114 (251)
T ss_pred cCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhh
Confidence 344456789999999999988886542 13444443 344444444431 1222222355565567999998776554
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
.. -+...++-||-|+|+|||.+++-
T Consensus 115 -~~---~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 115 -WC---GNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred -hc---CCHHHHHHHHHHHcCCCeEEEEE
Confidence 21 25789999999999999999985
No 238
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.16 E-value=0.03 Score=57.62 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=43.7
Q ss_pred CCeEEEECCCcchHHHHHhh-------------------CCceEEEcCcccchHHHHHHHHH-------------cCCCc
Q 013393 45 IRNVLDVGCGVASFGAYLLS-------------------HDIIAMSLAPNDVHENQIQFALE-------------RGIPS 92 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~-------------------~~V~gvdis~~dis~a~i~~a~e-------------~~~~~ 92 (444)
.-+|+|+|||+|..+..+.. -.|.--|+-..|..........- .+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 34799999999976655432 12333455555544333222110 11111
Q ss_pred EEEEe---cCccCCCCCCCccEEEeccccccccc
Q 013393 93 TLGVL---GTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 93 ~~~~~---d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.|..+ .+..--||+++.+++||+.+ +||+.
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~s-lHWLS 176 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFS-LHWLS 176 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeecc-ceecc
Confidence 22211 12333478999999999995 89964
No 239
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.12 E-value=0.065 Score=50.52 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=74.6
Q ss_pred EEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecC-ccCCCCCCCccEEEeccccccc
Q 013393 48 VLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 48 VLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~-~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
|.||||--|.++.+|++. .++++|+++.-+..+....++.. ...+.+...|. ..++ +.+..|.|+.+.+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG-- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG-- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-H--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCH--
Confidence 689999999999999985 57888888876666554444332 23456666663 3343 223378888766322
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
.-....|.+....++..-.|+++... ....+++.+.+.||.++.+.-
T Consensus 78 -~lI~~ILe~~~~~~~~~~~lILqP~~----------~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 78 -ELIIEILEAGPEKLSSAKRLILQPNT----------HAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp -HHHHHHHHHTGGGGTT--EEEEEESS-----------HHHHHHHHHHTTEEEEEEEE
T ss_pred -HHHHHHHHhhHHHhccCCeEEEeCCC----------ChHHHHHHHHHCCCEEEEeEE
Confidence 22346777777788877788886332 245788999999999887753
No 240
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.06 E-value=0.022 Score=63.42 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=72.3
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHh----hcccc----c-cccccccCCCCCCcccchhhcccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGLI----G-TVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~----~rg~~----~-~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
+.|+|+.++-|+|+-++.....- .|+-++.. .-|...- .-|+= = +-.|..+.+...+++||+|=.+-=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 58999999999999888754321 35556643 3333221 12331 1 122333322233678999866532
Q ss_pred -cccccc------CCCChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhccceeEEe
Q 013393 360 -FSEIEE------RGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLS 413 (444)
Q Consensus 360 -~~~~~~------~~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~~~~ 413 (444)
|+...+ -.=...+++-..=|+|+|||.+++-....-+....+.+..-.++++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence 110000 001256677777899999999999666665666677777777887643
No 241
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.00 E-value=0.097 Score=48.55 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=74.1
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccch-----H--HHHHHHHHcC-CCcEEEEecCccCC---
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVH-----E--NQIQFALERG-IPSTLGVLGTKRLP--- 103 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis-----~--a~i~~a~e~~-~~~~~~~~d~~~lp--- 103 (444)
.|+++. +|+|+=.|.|.|++-++.. .-....+.|.+.. + .+...+++.. .+....-...-.++
T Consensus 45 Glkpg~---tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq 121 (238)
T COG4798 45 GLKPGA---TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQ 121 (238)
T ss_pred ccCCCC---EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCC
Confidence 556666 9999999999999988762 1123344554431 1 1111222211 11111111111122
Q ss_pred ----CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhh----HH--HHHHHHHHHHhcCeE
Q 013393 104 ----YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN----RR--IWNAMYDLLKSMCWK 173 (444)
Q Consensus 104 ----~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~----~~--~~~~l~~l~~~~gf~ 173 (444)
.+..++|.+.... .+| .....++..++++.|||||.+++.++....-.... .. .-..+....+..||+
T Consensus 122 ~~d~~~~~~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFk 199 (238)
T COG4798 122 KLDLVPTAQNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFK 199 (238)
T ss_pred cccccccchhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcce
Confidence 1123344443333 233 34556899999999999999999765543211111 11 123567788899998
Q ss_pred EEeeec
Q 013393 174 IVSKKD 179 (444)
Q Consensus 174 ~v~~~~ 179 (444)
...+..
T Consensus 200 l~aeS~ 205 (238)
T COG4798 200 LEAESE 205 (238)
T ss_pred eeeeeh
Confidence 876654
No 242
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.96 E-value=0.017 Score=58.98 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=36.9
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR 101 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~ 101 (444)
+|||+-||+|.++..|++. .|+|+++.+..+..+..+.....-.++.|...+.++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 6999999999999999984 799999988777666544333333467787665543
No 243
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.96 E-value=0.017 Score=56.40 Aligned_cols=96 Identities=21% Similarity=0.208 Sum_probs=66.1
Q ss_pred eEEEecccccchhhhhccCC--CceEEEeccccC-CCchhHHhhcc-------c--cccccccccCCCCCCcccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDRG-------L--IGTVHDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~~~l~~~~~rg-------~--~~~~~~~~~~~~~y~~~~dl~h~~ 357 (444)
..|+|..+|-|.++..|... |-+ +|+=+|- ++-|...-+|. . |-..+.-.+.+|.=+.+||++.++
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 47999999999999887653 222 4555553 35555544431 1 223333456666444799999988
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
..+.... +...++-||-|+|||||.+++-|
T Consensus 153 ~~l~~~~----d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNVV----DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccCC----CHHHHHHHHHHHcCcCcEEEEEE
Confidence 7776332 57889999999999999998865
No 244
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.92 E-value=0.0097 Score=59.15 Aligned_cols=70 Identities=13% Similarity=0.001 Sum_probs=44.2
Q ss_pred eEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--CCC--CCccEEEeccc
Q 013393 47 NVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPS--RSFELAHCSRC 117 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~~~--~sFDlI~~~~~ 117 (444)
.+||.+||.|..+..+++. .|+|+|.++.++..+...... ..++.+...+...+. .++ .++|.|++...
T Consensus 22 ~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 22 IYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred EEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEEECCC
Confidence 8999999999999999874 467776666554433322211 235666666655432 111 26888887654
Q ss_pred c
Q 013393 118 R 118 (444)
Q Consensus 118 ~ 118 (444)
+
T Consensus 100 v 100 (296)
T PRK00050 100 V 100 (296)
T ss_pred c
Confidence 3
No 245
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=95.74 E-value=0.011 Score=57.81 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=60.1
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcc----ccccccccccCCCCCCcccchhhccccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 364 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg----~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~ 364 (444)
..|+|+.++.|+++..|.... -.+|+=++- ++.+...-+|- -+-..+.=++..+.=+.+||+|++...+-+..
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~ 131 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLS 131 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCC
Confidence 479999999999988875431 113444443 23333333321 12111111122222247999999976654332
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 365 ERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 365 ~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
..+...++-|+-|+|+|||.+++-|-
T Consensus 132 --~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 132 --YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred --HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 12477899999999999999999764
No 246
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=95.73 E-value=0.011 Score=55.93 Aligned_cols=113 Identities=18% Similarity=0.272 Sum_probs=70.8
Q ss_pred EEEecccccchhhhhccCC-CceEEEecccc-CCCchhH----Hhhcccc---ccccccccCCCCCCcccchhhcccccc
Q 013393 291 NVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLKI----IYDRGLI---GTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~-~~~~l~~----~~~rg~~---~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
.|+|+.++.|+++..+.+. |- -+|+-++ +++.+.. +-+.|+- -+.+.-.+.. .+|.+||+|++.++|.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~~~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPH--LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-PFPDTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-CCCCCCCEeehHHHHH
Confidence 5899999999998887542 21 1333333 2333333 2234552 2222212222 2468999999999887
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEeccHH----------------HHHHHHHHHhhcccee
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------------IINYIRKFITALKWDG 410 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~----------------~~~~~~~~~~~~~w~~ 410 (444)
... +...++-++.|+|+|||++++.|... ...++.+++..-.+++
T Consensus 79 ~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~ 139 (224)
T smart00828 79 HIK----DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRV 139 (224)
T ss_pred hCC----CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeE
Confidence 442 37889999999999999999976421 1345556666666665
No 247
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.72 E-value=0.048 Score=54.99 Aligned_cols=131 Identities=16% Similarity=0.085 Sum_probs=82.0
Q ss_pred CCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc-------CCCcEEEEecCccC-CCCCCCcc
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-------GIPSTLGVLGTKRL-PYPSRSFE 110 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~-------~~~~~~~~~d~~~l-p~~~~sFD 110 (444)
...++||=+|-|.|.-.+.+.+- +++-+|++|.+++-+..+.+... .+.+.+...|+..+ .-..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 34568999999999999999873 56777777766644432222111 22344555554332 22356899
Q ss_pred EEEeccccccccccH-----HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 111 LAHCSRCRIDWLQRD-----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 111 lI~~~~~~l~~~~d~-----~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.|+.-. .-+-.+.. .++..-+.|.|+++|.++++..++|.... .+-.+..-++++||.+...+
T Consensus 368 ~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~----vfw~i~aTik~AG~~~~Pyh 435 (508)
T COG4262 368 VVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR----VFWRIDATIKSAGYRVWPYH 435 (508)
T ss_pred EEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc----eeeeehhHHHhCcceeeeeE
Confidence 998643 11111111 26788889999999999998877664322 23345666788898776544
No 248
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.71 E-value=0.23 Score=46.35 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=83.4
Q ss_pred eEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--C--CCCCccEEEecccc
Q 013393 47 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--Y--PSRSFELAHCSRCR 118 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~--~~~sFDlI~~~~~~ 118 (444)
+||=+|+-+|....++++ ..+.++++++....+ .+..|.+| .|+.-...|+. .| | --+..|+|++--+
T Consensus 79 ~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~re-Ll~~a~~R-~Ni~PIL~DA~-~P~~Y~~~Ve~VDviy~DVA- 154 (231)
T COG1889 79 KVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRE-LLDVAEKR-PNIIPILEDAR-KPEKYRHLVEKVDVIYQDVA- 154 (231)
T ss_pred EEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHH-HHHHHHhC-CCceeeecccC-CcHHhhhhcccccEEEEecC-
Confidence 899999999988888876 248899999976644 44666665 33333344542 23 1 1356899987542
Q ss_pred ccccccH-HHHHHHHHhhcCCCeEEEEEcCCCC-CCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 119 IDWLQRD-GILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 119 l~~~~d~-~~~L~ei~rvLkPGG~lvis~p~~~-~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
.++. +.+..++...||+||+++++...-. .-+.+....+.+-.+.+++.+|++.+.-+
T Consensus 155 ---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~ 214 (231)
T COG1889 155 ---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVD 214 (231)
T ss_pred ---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEec
Confidence 2344 4678889999999998887542211 12233456777666677778898877654
No 249
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.60 E-value=0.13 Score=45.21 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=56.4
Q ss_pred CCCCeEEEECCCcchHHHHHhh-----C---CceEEEcCcccchHHHHHHHHHcC----CCcEEEEecCccCCCCCCCcc
Q 013393 43 GNIRNVLDVGCGVASFGAYLLS-----H---DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKRLPYPSRSFE 110 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~-----~---~V~gvdis~~dis~a~i~~a~e~~----~~~~~~~~d~~~lp~~~~sFD 110 (444)
....+|+|+|||.|.++..|+. . .|+++|..+.....+. +.+++.+ .+..+...+....+ .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ-KRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH-HHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4455899999999999998887 3 6778887765443332 3333333 12223233222221 134567
Q ss_pred EEEeccccccccccHHH-HHHHHHhhcCCCeEEEEEcCCCC
Q 013393 111 LAHCSRCRIDWLQRDGI-LLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 111 lI~~~~~~l~~~~d~~~-~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
+++. +|-..+... +++...+ |+-.+++..|.-|
T Consensus 102 ~~vg----LHaCG~Ls~~~l~~~~~---~~~~~l~~vpCCy 135 (141)
T PF13679_consen 102 ILVG----LHACGDLSDRALRLFIR---PNARFLVLVPCCY 135 (141)
T ss_pred EEEE----eecccchHHHHHHHHHH---cCCCEEEEcCCcc
Confidence 7763 555556553 3433333 6666776667654
No 250
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.59 E-value=0.026 Score=53.58 Aligned_cols=97 Identities=19% Similarity=0.283 Sum_probs=59.9
Q ss_pred eEEEecccccchhhhhccCC--CceEEEeccccC-CCchhHH----hhccc--cccccccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKII----YDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~~~l~~~----~~rg~--~~~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
..|+|+.++-|.++..|.+. |- -+|+=++- ++.+... -+.++ +-+.+.=.+.++.-+.+||+|++...+
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPE--GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL 124 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc
Confidence 47999999999999888642 21 12333332 2333221 12233 222332233333224799999988776
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
... . +...++-|+-|+|+|||.+++.|.
T Consensus 125 ~~~-~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 125 RNV-P---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccC-C---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 532 2 356788999999999999998663
No 251
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.57 E-value=0.055 Score=54.87 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=40.4
Q ss_pred CCCeEEEECCCcchHHHHHhhC--------------------CceEEEcCcccchHHHHHHHHH-----cCCCcEEE-Ee
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALE-----RGIPSTLG-VL 97 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~--------------------~V~gvdis~~dis~a~i~~a~e-----~~~~~~~~-~~ 97 (444)
+.-+|+|+||.+|..+..+.+. .|.--|+-..|.+.-....... ...++... +.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 3447999999999777655430 3455677777765433222221 12233222 22
Q ss_pred -cCccCCCCCCCccEEEeccccccccc
Q 013393 98 -GTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 98 -d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+..--||+++.|+++|+. .+||+.
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~-alHWLS 121 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSY-ALHWLS 121 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES--TTB-S
T ss_pred chhhhccCCCCceEEEEEec-hhhhcc
Confidence 2334447899999999998 489853
No 252
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.56 E-value=0.075 Score=52.27 Aligned_cols=102 Identities=12% Similarity=0.145 Sum_probs=53.7
Q ss_pred CCCeEEEECCCcchHHH-HHhhC-----CceEEEcCcccchHHHHHHHH---HcCCCcEEEEecCccCCCCCCCccEEEe
Q 013393 44 NIRNVLDVGCGVASFGA-YLLSH-----DIIAMSLAPNDVHENQIQFAL---ERGIPSTLGVLGTKRLPYPSRSFELAHC 114 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~-~La~~-----~V~gvdis~~dis~a~i~~a~---e~~~~~~~~~~d~~~lp~~~~sFDlI~~ 114 (444)
.+++|+=||||.=-++. .|++. .++++|+++.....+. +..+ ..+....|...|....+..-..||+|+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 45699999999764443 34432 3566777665443332 1222 1245667888887666654468999997
Q ss_pred ccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 115 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 115 ~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+..+-.-.++..++|.++.+.++||..+++-.
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 76322223467799999999999999999853
No 253
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.53 E-value=0.0061 Score=60.33 Aligned_cols=101 Identities=23% Similarity=0.319 Sum_probs=62.2
Q ss_pred eEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCC-cEEEEecCccC-C-CCCCCccEEEe----
Q 013393 47 NVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRL-P-YPSRSFELAHC---- 114 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~l-p-~~~~sFDlI~~---- 114 (444)
+|||+.++.|.=+.++++ ..+++.|++..-+.... +..+..|.. +.....|.... + .....||.|..
T Consensus 88 ~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPC 166 (283)
T PF01189_consen 88 RVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDAPC 166 (283)
T ss_dssp EEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEECSC
T ss_pred cccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhcCCCc
Confidence 799999999987777765 25777777764332222 233334554 44444565444 1 22346999996
Q ss_pred ccc-ccccccc----------------HHHHHHHHHhhc----CCCeEEEEEcCC
Q 013393 115 SRC-RIDWLQR----------------DGILLLELDRLL----RPGGYFVYSSPE 148 (444)
Q Consensus 115 ~~~-~l~~~~d----------------~~~~L~ei~rvL----kPGG~lvis~p~ 148 (444)
+.. ++...++ ..++|..+.+.+ ||||+++.++=+
T Consensus 167 Sg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 167 SGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred cchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 210 1111111 126899999999 999999998644
No 254
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=95.49 E-value=0.0093 Score=58.71 Aligned_cols=108 Identities=16% Similarity=0.371 Sum_probs=68.1
Q ss_pred HHHHHHhhhhccCCceeEEEecccccchhhhhccCC-CceEEEecccc-CCCchh----HHhhccccccccccccCCCCC
Q 013393 274 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLK----IIYDRGLIGTVHDWCESFSTY 347 (444)
Q Consensus 274 ~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~-~~~~l~----~~~~rg~~~~~~~~~~~~~~y 347 (444)
+.+...++ |+.+. .|+|+..|+||+|-.+.+. .+ +|+-++ ++++.. -|-++||-+...=-|.-+...
T Consensus 52 ~~~~~~~~--l~~G~--~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 52 DLLCEKLG--LKPGD--RVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHHTTTT----TT---EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred HHHHHHhC--CCCCC--EEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence 34555554 66664 8999999999999999765 55 344333 335555 367888754333223333334
Q ss_pred CcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 348 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 348 ~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
|-+||-|=+-+.|-+... =+....+-.++|.|+|||.+++.
T Consensus 125 ~~~fD~IvSi~~~Ehvg~--~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 125 PGKFDRIVSIEMFEHVGR--KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp --S-SEEEEESEGGGTCG--GGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCCCCEEEEEechhhcCh--hHHHHHHHHHHHhcCCCcEEEEE
Confidence 449999988888886632 35788899999999999999885
No 255
>PLN02244 tocopherol O-methyltransferase
Probab=95.43 E-value=0.022 Score=57.89 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=61.9
Q ss_pred CceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhH----Hhhccccc---cc-cccccCCCCCCcccchhhcc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGLIG---TV-HDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~----~~~rg~~~---~~-~~~~~~~~~y~~~~dl~h~~ 357 (444)
..-..|+|+.+|.|+++..|.+.- -.+|+=++- ++.+.. +-++|+-. .. .|. +.++.-+.+||+|.+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEEC
Confidence 344579999999999998887531 123433332 233322 23345422 11 232 2334335899999987
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
..+.++. +...+|-||-|+|||||.++|-|
T Consensus 194 ~~~~h~~----d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMP----DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 7665432 36789999999999999999843
No 256
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=95.20 E-value=0.026 Score=56.91 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=59.8
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccCCCchh---HHhh-ccc---cccccccccCCCCCCcccchhhcccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLK---IIYD-RGL---IGTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~---~~~~-rg~---~~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
+.|+|+.+|.|.++..|... +.-|.-|=|.. ..+- .+-. .+. |-+.+.=-|.++. +.+||+|++.+++-
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~--~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQ--LFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 58999999999999888653 33333322221 1111 1100 010 1111111244555 89999999999876
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
+ .-+...+|-++-|.|+|||.+++.
T Consensus 201 H----~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 201 H----RRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred c----cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 3 335788999999999999999985
No 257
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.19 E-value=0.095 Score=53.60 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=68.8
Q ss_pred CeEEEECCCcchHHHHHhhCC-------------------------------------------ceEEEcCcccchHHHH
Q 013393 46 RNVLDVGCGVASFGAYLLSHD-------------------------------------------IIAMSLAPNDVHENQI 82 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~-------------------------------------------V~gvdis~~dis~a~i 82 (444)
..++|-=||+|.+.+..+-.. ++|+|+++.++..+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak- 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK- 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH-
Confidence 379999999999887665311 558888887765444
Q ss_pred HHHHHcCCC--cEEEEecCccCCCCCCCccEEEecccccccccc---H----HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 83 QFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR---D----GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 83 ~~a~e~~~~--~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d---~----~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
..|++.|.. +.|.+.|...++-+-+.+|+|+|+.-.-.-+.+ . ..+.+.+.+.++--+.++++++.
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 456666654 788899988887544789999997411111111 1 24555666777777888887655
No 258
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=95.15 E-value=0.052 Score=50.05 Aligned_cols=130 Identities=16% Similarity=0.253 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccC-CCceEEEeccccCC-CchhH----Hhhccc--ccccc
Q 013393 267 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLKI----IYDRGL--IGTVH 338 (444)
Q Consensus 267 ~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~~-~~l~~----~~~rg~--~~~~~ 338 (444)
.+|++.+-.-...+ ..+. =.+++|+.+|.|.++..|.. .|. ..|+=++.. +.+.. +-+.|+ |-+.+
T Consensus 25 ~~~~~~~~d~i~~~-~~~~---~~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~ 98 (181)
T TIGR00138 25 EIWERHILDSLKLL-EYLD---GKKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVN 98 (181)
T ss_pred HHHHHHHHHHHHHH-HhcC---CCeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEe
Confidence 46777664433323 2343 25899999999987665532 121 235545532 33322 223344 22233
Q ss_pred ccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhcc-ceeE
Q 013393 339 DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALK-WDGW 411 (444)
Q Consensus 339 ~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~-w~~~ 411 (444)
.=.+.++ .+.+||+|-+.. + ..+.+++-++.|+|+|||.+++.+......++.++.+++. |..+
T Consensus 99 ~d~~~~~-~~~~fD~I~s~~-~-------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 99 GRAEDFQ-HEEQFDVITSRA-L-------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred cchhhcc-ccCCccEEEehh-h-------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCce
Confidence 2223332 357999987765 2 2477888889999999999999999888999988887643 5554
No 259
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.11 E-value=0.04 Score=49.97 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=42.0
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCC--CCCCC-ccEEEec
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP--YPSRS-FELAHCS 115 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp--~~~~s-FDlI~~~ 115 (444)
+|+|+.||.|..+..+++. .|+++|+++.-+.-++ ..|+-.|. ++.+..+|..++. +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 7999999999999999985 5889988876543333 33444453 5788888854432 22122 8999985
No 260
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=95.06 E-value=0.026 Score=58.32 Aligned_cols=95 Identities=19% Similarity=0.388 Sum_probs=63.5
Q ss_pred eEEEecccccchhhhhccCC-CceEEEecccc-CCCchhHHhhc--cccccccccccCCCCCCcccchhhcccccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLKIIYDR--GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 365 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~-~~~~l~~~~~r--g~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~ 365 (444)
..++|+.+|.|++|..+... .+ .|+-++ ++..+...-+| |+ ++ +--+..+...+.+||+|.+.++|....
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Ivs~~~~ehvg- 242 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIVSVGMFEHVG- 242 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEEEeCchhhCC-
Confidence 47999999999999877653 32 455555 34555554443 32 11 111122222367899999998887442
Q ss_pred CCCChhhhhhhhcccccCCcEEEEec
Q 013393 366 RGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 366 ~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
.-+...++-++.|+|+|||.+++.+
T Consensus 243 -~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 243 -PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred -hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 2346789999999999999999864
No 261
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.02 E-value=0.023 Score=52.30 Aligned_cols=90 Identities=13% Similarity=0.194 Sum_probs=62.9
Q ss_pred eEEEECCCcchHHHHHhh--CCceEEEcCcccchHHHHHHHHHc-----CCCcEEEEecCccCCCCCCCccEEEecccc-
Q 013393 47 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRCR- 118 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~- 118 (444)
.+.|+|+|+|.++...+. .+|++++..|.- .+.|.++ ..+..+.+.|+....| +..|+|+|-..-
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~-----a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKDPKR-----ARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDT 107 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecCcHH-----HHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhH
Confidence 799999999988776655 378888877642 2344444 2356778888887777 468999986410
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEE
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFV 143 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lv 143 (444)
.-..+..-..+..+...||-++.++
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCccc
Confidence 0112344478888888999998887
No 262
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.93 E-value=0.06 Score=52.55 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=66.6
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHH---c
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE---R 88 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e---~ 88 (444)
|.+|-. -....+.+.+.+... ....|||+|+|+|.++..|++. .++++++++.. .+.-++ .
T Consensus 9 gQnFL~-~~~~~~~Iv~~~~~~--------~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~-----~~~L~~~~~~ 74 (262)
T PF00398_consen 9 GQNFLV-DPNIADKIVDALDLS--------EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDL-----AKHLKERFAS 74 (262)
T ss_dssp TSSEEE-HHHHHHHHHHHHTCG--------TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHH-----HHHHHHHCTT
T ss_pred CcCeeC-CHHHHHHHHHhcCCC--------CCCEEEEeCCCCccchhhHhcccCcceeecCcHhH-----HHHHHHHhhh
Confidence 444444 244566667776542 2338999999999999999874 67888777643 333333 3
Q ss_pred CCCcEEEEecCccCCCCC---CCccEEEeccccccccccHHHHHHHHHhhcCC
Q 013393 89 GIPSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRP 138 (444)
Q Consensus 89 ~~~~~~~~~d~~~lp~~~---~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkP 138 (444)
..++.+...|+..+..+. .....|+++ +++ .--..++.++...-+.
T Consensus 75 ~~~~~vi~~D~l~~~~~~~~~~~~~~vv~N---lPy-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 75 NPNVEVINGDFLKWDLYDLLKNQPLLVVGN---LPY-NISSPILRKLLELYRF 123 (262)
T ss_dssp CSSEEEEES-TTTSCGGGHCSSSEEEEEEE---ETG-TGHHHHHHHHHHHGGG
T ss_pred cccceeeecchhccccHHhhcCCceEEEEE---ecc-cchHHHHHHHhhcccc
Confidence 467888888888777553 345566654 444 2234566666664343
No 263
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=94.86 E-value=0.036 Score=53.69 Aligned_cols=99 Identities=13% Similarity=0.210 Sum_probs=66.3
Q ss_pred ccCCceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhccccccccccccCCCCCCcccchhhcccccc
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
+....-..|+|+.+|.|.++..|... |- ..|+=++- +..+...-++++ -+.+.--+.++ ...+||+|+++.+|-
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~--~~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWPG--AVIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEEEehhhh
Confidence 44344468999999999999888754 22 13444443 455555556653 22222123332 246899999999887
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
.+. +...++-|+-|+|+|||.+++-
T Consensus 101 ~~~----d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 101 WVP----EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hCC----CHHHHHHHHHHhCCCCcEEEEE
Confidence 332 3678999999999999999985
No 264
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=94.81 E-value=0.039 Score=57.98 Aligned_cols=55 Identities=27% Similarity=0.453 Sum_probs=43.1
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCcc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR 101 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~ 101 (444)
..+||+-||||.++..++++ .|+|+++++.++..|.. .|..+++ ++.|.++-+++
T Consensus 385 k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~-nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEK-NAQINGISNATFIVGQAED 442 (534)
T ss_pred cEEEEEeecCCceehhhhccccceeeeecChhhcchhhh-cchhcCccceeeeecchhh
Confidence 48999999999999999985 89999999988877764 4455554 67887774433
No 265
>PRK08317 hypothetical protein; Provisional
Probab=94.77 E-value=0.057 Score=50.82 Aligned_cols=99 Identities=24% Similarity=0.277 Sum_probs=62.1
Q ss_pred ceeEEEecccccchhhhhccCCC-ceEEEeccccC-CCchhHHhhc--cccccccccc---cCCCCCCcccchhhccccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKD-VWVMNVAPVRM-SARLKIIYDR--GLIGTVHDWC---ESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~-~wv~~~~~~~~-~~~l~~~~~r--g~~~~~~~~~---~~~~~y~~~~dl~h~~~~~ 360 (444)
.-..|+|+.++-|+++..+.+.- .- -+|+-++. ++.+...-++ +.-...+-.+ +.++.-+.+||+||+..+|
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPE-GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 34579999999999998886531 00 13444442 3445554444 1111111111 1122224789999999998
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
..+. +...++-++-|+|+|||++++-+
T Consensus 98 ~~~~----~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLE----DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccC----CHHHHHHHHHHHhcCCcEEEEEe
Confidence 7442 47889999999999999998754
No 266
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.63 E-value=0.013 Score=48.60 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=38.7
Q ss_pred EEECCCcchHHHHHhhC-------CceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCccC-C-CCCCCccEEEeccc
Q 013393 49 LDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRL-P-YPSRSFELAHCSRC 117 (444)
Q Consensus 49 LDVGCGtG~~a~~La~~-------~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~l-p-~~~~sFDlI~~~~~ 117 (444)
||+|+..|..+..+++. .++++|..+. .+...+..++. ..++.+...+..+. + ++.++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999888777652 4677877764 11222222222 23466776665432 1 3357899999654
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
-|-.+.....+..+.+.|+|||.+++-
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 222245557899999999999999874
No 267
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=94.59 E-value=0.093 Score=48.24 Aligned_cols=131 Identities=10% Similarity=0.077 Sum_probs=79.6
Q ss_pred hHhhHHHHHHHH-HHHhhhhccCCceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHh----hccccccc
Q 013393 265 DIGIWQVRVVDY-WKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY----DRGLIGTV 337 (444)
Q Consensus 265 ~~~~w~~~v~~y-~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~----~rg~~~~~ 337 (444)
..-..++.+... ...+. +. .-..++|+.++.|.++.++... |- -+|+-++. +..+...- ..|+-. .
T Consensus 11 ~~~~~~~~~r~~~~~~l~--~~--~~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~-i 83 (187)
T PRK08287 11 KVPMTKEEVRALALSKLE--LH--RAKHLIDVGAGTGSVSIEAALQFPS--LQVTAIERNPDALRLIKENRQRFGCGN-I 83 (187)
T ss_pred CCCCchHHHHHHHHHhcC--CC--CCCEEEEECCcCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCC-e
Confidence 344566666653 23333 33 3457999999999998777532 21 23444443 22233221 123211 0
Q ss_pred cccc-cCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEec-cHHHHHHHHHHHhhccce
Q 013393 338 HDWC-ESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWD 409 (444)
Q Consensus 338 ~~~~-~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd-~~~~~~~~~~~~~~~~w~ 409 (444)
.-.| .....++..||++.+++.. ..+..++-++-|.|+|||.+++-+ ..+-..++.++++...++
T Consensus 84 ~~~~~d~~~~~~~~~D~v~~~~~~-------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 84 DIIPGEAPIELPGKADAIFIGGSG-------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred EEEecCchhhcCcCCCEEEECCCc-------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 1011 1123456789999876643 247788889999999999999976 566678888888888875
No 268
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.38 E-value=0.18 Score=51.10 Aligned_cols=122 Identities=21% Similarity=0.215 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--------CceEEEcCcccchHHHHHHHHHc--CCCc
Q 013393 23 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALER--GIPS 92 (444)
Q Consensus 23 ~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--------~V~gvdis~~dis~a~i~~a~e~--~~~~ 92 (444)
.|.....+|++-..-.++|+. +|||+.+-.|+=+..|++. .|++-|+++.-...-.-+. .+ ..+.
T Consensus 137 i~rqeavSmlPvL~L~v~p~~---~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~--~~l~~~~~ 211 (375)
T KOG2198|consen 137 IYRQEAVSMLPVLALGVKPGD---KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL--KRLPSPNL 211 (375)
T ss_pred chhhhhhhccchhhcccCCCC---eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH--hccCCcce
Confidence 345567788887777888887 8999999999888777762 3444444443221111111 22 1222
Q ss_pred EEEEecCccCC---------CCCCCccEEEecc-c----cccccc----------------c-HHHHHHHHHhhcCCCeE
Q 013393 93 TLGVLGTKRLP---------YPSRSFELAHCSR-C----RIDWLQ----------------R-DGILLLELDRLLRPGGY 141 (444)
Q Consensus 93 ~~~~~d~~~lp---------~~~~sFDlI~~~~-~----~l~~~~----------------d-~~~~L~ei~rvLkPGG~ 141 (444)
.+...+....| .....||-|.|-- | .+.... . .-.+|.+..++||+||.
T Consensus 212 ~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~ 291 (375)
T KOG2198|consen 212 LVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGR 291 (375)
T ss_pred eeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCE
Confidence 22222222222 2345699999820 1 011000 0 12688899999999999
Q ss_pred EEEEcCCC
Q 013393 142 FVYSSPEA 149 (444)
Q Consensus 142 lvis~p~~ 149 (444)
++.|+=+.
T Consensus 292 lVYSTCSL 299 (375)
T KOG2198|consen 292 LVYSTCSL 299 (375)
T ss_pred EEEeccCC
Confidence 99987554
No 269
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.37 E-value=0.14 Score=50.88 Aligned_cols=94 Identities=16% Similarity=0.268 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHh----hCCceEEEcCcccchHHHHHHHHHcCC--CcE
Q 013393 20 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGI--PST 93 (444)
Q Consensus 20 g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La----~~~V~gvdis~~dis~a~i~~a~e~~~--~~~ 93 (444)
+.-.|+.-++.++......++. .-++||||||.-..-..|. .-.++|.|+++..+..++....+..+. .+.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~---~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPE---KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS------EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hhHHHHHHHHHHhhcccccccc---ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 3457888888888754333211 3479999999874433332 236777777776666666544444233 344
Q ss_pred EEEecCcc-----CCCCCCCccEEEecc
Q 013393 94 LGVLGTKR-----LPYPSRSFELAHCSR 116 (444)
Q Consensus 94 ~~~~d~~~-----lp~~~~sFDlI~~~~ 116 (444)
+....... +..+.+.||+..|+-
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNP 185 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNP 185 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE--
T ss_pred EEEcCCccccchhhhcccceeeEEecCC
Confidence 44332111 222346899999986
No 270
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.32 E-value=0.22 Score=46.00 Aligned_cols=92 Identities=21% Similarity=0.222 Sum_probs=53.9
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEe-cCcc--------CC
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVL-GTKR--------LP 103 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~-d~~~--------lp 103 (444)
-|.|+. +|||+||..|+|+.-..++ .|.|+|+-....-+. +.+... |..+ -.
T Consensus 66 ~l~p~~---~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~G-----------a~~i~~~dvtdp~~~~ki~e~ 131 (232)
T KOG4589|consen 66 FLRPED---TVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEG-----------ATIIQGNDVTDPETYRKIFEA 131 (232)
T ss_pred ccCCCC---EEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCC-----------cccccccccCCHHHHHHHHHh
Confidence 344555 9999999999999887764 478888765432111 111111 2111 01
Q ss_pred CCCCCccEEEeccccccc-----cccHH-------HHHHHHHhhcCCCeEEEEE
Q 013393 104 YPSRSFELAHCSRCRIDW-----LQRDG-------ILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 104 ~~~~sFDlI~~~~~~l~~-----~~d~~-------~~L~ei~rvLkPGG~lvis 145 (444)
.|....|+|++-. .+- ..|.. .++.-....++|+|.|+.-
T Consensus 132 lp~r~VdvVlSDM--apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 132 LPNRPVDVVLSDM--APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred CCCCcccEEEecc--CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 3567899998743 111 12222 2344445678899999984
No 271
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.31 E-value=1.1 Score=43.22 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=81.2
Q ss_pred CCeEEEECCCcc-hHHHHHhh--CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-CCCC-CCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVA-SFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYP-SRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG-~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp~~-~~sFDlI~~~~~~l 119 (444)
.++||=+|=.-- +++..+.. ++|+.+|+...-+ ....+.|++.+.++.....|... +|-. .++||++++-- .
T Consensus 45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP--P 121 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP--P 121 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE-----
T ss_pred CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC--C
Confidence 348999996654 45555533 4788888876544 23335677778888888888643 4421 48899999864 2
Q ss_pred cccccHHHHHHHHHhhcCCCe-EEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeecceeEeeccCchh--hHhhc
Q 013393 120 DWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNS--CYLKR 196 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG-~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~~~~~w~k~l~~~--c~~~~ 196 (444)
.-.+....++.+....||.-| ..+++- ...+.+...|.++.+.+.++|+-+...-.....|.--.... -....
T Consensus 122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~----~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~ga~~i~~~~~~~~ 197 (243)
T PF01861_consen 122 YTPEGLKLFLSRGIEALKGEGCAGYFGF----THKEASPDKWLEVQRFLLEMGLVITDIIPDFNRYEGAEIIGNTRFWQV 197 (243)
T ss_dssp SSHHHHHHHHHHHHHTB-STT-EEEEEE-----TTT--HHHHHHHHHHHHTS--EEEEEEEEEEEB---S-GGGSHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEE----ecCcCcHHHHHHHHHHHHHCCcCHHHHHhhhcccccchhhcccceeEE
Confidence 223455688999999999766 333321 12223456799999999999997766555444443211111 00111
Q ss_pred CCCCCCCcccCCCCcchhhhhcccccccccc
Q 013393 197 VPGSRPPLCSSDDDPDVTWNVLMKACISPYS 227 (444)
Q Consensus 197 ~~~~~p~lc~~~~~~~~awy~~l~~ci~~~p 227 (444)
. + ....++..||......+..+.
T Consensus 198 l-----~---v~~~~~~~~y~s~~~rie~~~ 220 (243)
T PF01861_consen 198 L-----P---VKKRPEKIWYRSTMPRIETVR 220 (243)
T ss_dssp S-----S---S----SS---EEEEEEEE--T
T ss_pred e-----c---cccccccccccceeEEEEEec
Confidence 0 0 013566778887776665554
No 272
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=94.27 E-value=0.096 Score=50.63 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=60.3
Q ss_pred cCCceeEEEecccccchhhhhccCC-CceEEEeccccCC-CchhHHhhcc-ccccccccccCCCCCCcccchhhcccccc
Q 013393 285 QKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRG-LIGTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 285 ~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~~~~rg-~~~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
....-.+|+|+.+|.|.++..|... |. -+|+=++.. .-+...-++- =+.+...=.+.+. .+.+||+++++..|.
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWPA--ARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQ 104 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChh
Confidence 3344568999999999999888643 21 133333332 2222221110 0112211112221 246999999999886
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
.+. +...++-+|-|+|+|||.+++.
T Consensus 105 ~~~----d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 105 WLP----DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred hCC----CHHHHHHHHHHhcCCCcEEEEE
Confidence 332 3678999999999999999985
No 273
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=94.24 E-value=0.07 Score=48.72 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=73.0
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHH----hhccccc--cccccccCCCCCCcccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII----YDRGLIG--TVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~----~~rg~~~--~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
..++|+.++.|.++.++..... .|+=++- +..+... ...|+-- +.-|+.+. .+.+||++-++--|..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCC
Confidence 4699999999999988876432 4544443 3333321 1122211 11244333 3569999987765531
Q ss_pred ccc-----------------CCCChhhhhhhhcccccCCcEEEEeccHHH-HHHHHHHHhhccceeE
Q 013393 363 IEE-----------------RGCSFEDLLIEMDRMLRPEGFVIIRDKSSI-INYIRKFITALKWDGW 411 (444)
Q Consensus 363 ~~~-----------------~~c~~~~~~~e~drilrp~g~~~~rd~~~~-~~~~~~~~~~~~w~~~ 411 (444)
... ..+.+..++-++.|+|+|||.+++-+.... ..++.+.++...++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYE 161 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEE
Confidence 110 122367889999999999999988765554 6677777777777774
No 274
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=94.18 E-value=0.041 Score=51.21 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=60.4
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhH----Hhhcccc--ccccccccCCCCCCcccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLI--GTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~----~~~rg~~--~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
..++|+.+|.|.++..|.... ..|+-+|.. +-+.. +-+.|+- ..-.|. +.++ +|.+||+|-+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~~-~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDI-NAAA-LNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-hhcc-ccCCCCEEEEeccccc
Confidence 489999999999998887642 256666643 33332 2233431 111122 2222 3578999999888863
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEE
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
+. .-....++-++.|.|+|||+++|
T Consensus 107 ~~--~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQ--AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CC--HHHHHHHHHHHHHHhCCCcEEEE
Confidence 32 23577899999999999998544
No 275
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=94.18 E-value=0.03 Score=52.21 Aligned_cols=93 Identities=19% Similarity=0.323 Sum_probs=61.5
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-Cchh----HHhhcccc---ccccccccCCCCCCcccchhhcccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLK----IIYDRGLI---GTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~----~~~~rg~~---~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
-.++|+.+|.|.++..|.+.. + +|+-+|.. .-+. .+-.+|+- ..-.|.++ ++ ++.+||+|-+..+|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g-~--~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANG-F--DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-LT-FDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCC-C--EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-CC-cCCCcCEEEEecchh
Confidence 479999999999999998652 2 55555542 3222 23344542 22234432 22 367899999988775
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
.+. .-....++-+|-|.|+|||.+++
T Consensus 107 ~~~--~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLE--AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCC--HHHHHHHHHHHHHHcCCCcEEEE
Confidence 222 23478899999999999999655
No 276
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=94.18 E-value=0.031 Score=53.74 Aligned_cols=114 Identities=20% Similarity=0.260 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----cc--cccccc
Q 013393 267 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL--IGTVHD 339 (444)
Q Consensus 267 ~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~--~~~~~~ 339 (444)
..|++.+.... . ...+. .|+|+.+|.|-.+..|.+.-----.|+-+|- ++-|.+.-+| |+ |=..+.
T Consensus 33 ~~wr~~~~~~~---~--~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 33 RRWRRKLIKLL---G--LRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp ----SHHHHHH---T----S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHhcc---C--CCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 56777654432 2 22222 8999999999988877643111125666664 4666665443 33 222333
Q ss_pred cccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 340 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 340 ~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
=.|.+|.-..|||.+=++..+-. -++..-.|-||-|+|||||.++|=|
T Consensus 106 da~~lp~~d~sfD~v~~~fglrn----~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLRN----FPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GGG-----SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHhcCCCCceeEEEHHhhHHh----hCCHHHHHHHHHHHcCCCeEEEEee
Confidence 35777766699999987766552 2568889999999999999998843
No 277
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.16 E-value=0.13 Score=52.79 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=68.2
Q ss_pred HHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh----C-CceEEEcCcccchHHHHHHHHHcCCCc-EEEEecCc
Q 013393 27 ALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----H-DIIAMSLAPNDVHENQIQFALERGIPS-TLGVLGTK 100 (444)
Q Consensus 27 ~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~----~-~V~gvdis~~dis~a~i~~a~e~~~~~-~~~~~d~~ 100 (444)
.+..+++...-+-++|. ||||+.+-.|.=+.+++. . .|++.|....-+ ....+.+...|.+. .+...|..
T Consensus 227 ~~sS~Lpv~aL~Pq~gE---RIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-~~l~~n~~rlGv~ntiv~n~D~~ 302 (460)
T KOG1122|consen 227 NASSFLPVMALDPQPGE---RILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-KSLKANLHRLGVTNTIVSNYDGR 302 (460)
T ss_pred cCcccceeeecCCCCCC---eecchhcCCCchHHHHHHHHcCCceEEecccchHHH-HHHHHHHHHhCCCceEEEccCcc
Confidence 34455554443445555 899999999965555554 2 344444433222 11222333345543 44455665
Q ss_pred cCC---CCCCCccEEEe----cccccc-------ccc----------cHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 101 RLP---YPSRSFELAHC----SRCRID-------WLQ----------RDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 101 ~lp---~~~~sFDlI~~----~~~~l~-------~~~----------d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
.+| ++. +||-|.. +...+- +.. =..++|..+...++|||+|+.|+=...
T Consensus 303 ef~~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 303 EFPEKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred cccccccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 555 554 8999984 321111 111 123788999999999999999876543
No 278
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.04 E-value=0.16 Score=49.64 Aligned_cols=100 Identities=15% Similarity=0.240 Sum_probs=51.4
Q ss_pred CCCeEEEECCCcc--hHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCC--cEEEEecCccC------------
Q 013393 44 NIRNVLDVGCGVA--SFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRL------------ 102 (444)
Q Consensus 44 ~~~rVLDVGCGtG--~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~l------------ 102 (444)
.++..||||||-= ...-.+++ ..|.-+|..|+-+..+..-.+ ...+ ..+...|..+.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~--~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA--DNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT--T-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc--CCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 5778999999943 23333433 478888888865433322121 2233 56777775441
Q ss_pred -CCCCCCccEEEecccccccccc---HHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 103 -PYPSRSFELAHCSRCRIDWLQR---DGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 103 -p~~~~sFDlI~~~~~~l~~~~d---~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.+ ++..=++. ..++||++| +..++..+...|.||.+|+++...
T Consensus 146 lD~-~rPVavll--~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 146 LDF-DRPVAVLL--VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp --T-TS--EEEE--CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCC-CCCeeeee--eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 11 23333333 336888755 468999999999999999998654
No 279
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=93.86 E-value=0.12 Score=48.18 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=60.3
Q ss_pred ceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhccc----ccc-ccccccCCCCCCcccchhhccccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL----IGT-VHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~rg~----~~~-~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
.=..|+|+.++.|.++.++... |. --+++-++. +..+..+-++.- +-+ ..|-.+ .+.-+.+||+++++..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeee
Confidence 3458999999999998887542 21 012333332 233333333321 111 122222 23234689999988776
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
.. -.+...++-++-++|+|||.+++-+
T Consensus 117 ~~----~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 117 RN----VTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CC----cccHHHHHHHHHHHcCCCcEEEEEE
Confidence 52 2457889999999999999999854
No 280
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=93.85 E-value=0.1 Score=49.09 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=60.0
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhccc--cccccccccCCCCCCcccchhhcccccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 365 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~rg~--~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~ 365 (444)
..|+|..++.|.+...|... |.. .|+-++. +.-+.....+.- +-.++.=.+.++..+.+||+|.+++++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~-- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA--EFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC-- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC--cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhc--
Confidence 57999999999999888653 110 1222222 122222222210 111222223445556899999999888622
Q ss_pred CCCChhhhhhhhcccccCCcEEEEec
Q 013393 366 RGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 366 ~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
.+...++-++-|+|+|||.+++..
T Consensus 112 --~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 --DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 347889999999999999999853
No 281
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=93.78 E-value=0.053 Score=52.54 Aligned_cols=94 Identities=17% Similarity=0.217 Sum_probs=63.7
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHh----hccccc---cccccccCCC-CCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGLIG---TVHDWCESFS-TYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~----~rg~~~---~~~~~~~~~~-~y~~~~dl~h~~~~~ 360 (444)
..|+|+.+|.|.++..|.... -+|+-++. +..+...- +.|+.. +.+.-.+.++ ..+.+||++.+.++|
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 589999999999999998753 35666664 34454432 234422 1111111122 346899999999998
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
..+. +...++-++-|+|+|||.+++-
T Consensus 123 ~~~~----~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 123 EWVA----DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HhhC----CHHHHHHHHHHHcCCCeEEEEE
Confidence 7443 3578899999999999999873
No 282
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=93.66 E-value=0.078 Score=49.65 Aligned_cols=121 Identities=14% Similarity=0.081 Sum_probs=76.1
Q ss_pred eeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHH----hhccc--ccccc-ccccCCC--CCCcccchhhcc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKII----YDRGL--IGTVH-DWCESFS--TYPRTYDLLHAW 357 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~----~~rg~--~~~~~-~~~~~~~--~y~~~~dl~h~~ 357 (444)
-.+++|+.++.|.++..|... |- .+|+=++- +.-+... ...|+ +-+.+ |..+.++ .-+.+||++-..
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 468999999999999888643 32 13444442 2333322 12233 12222 2224444 226789998764
Q ss_pred ccccc----cccCCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHHHhhccceeE
Q 013393 358 KVFSE----IEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDGW 411 (444)
Q Consensus 358 ~~~~~----~~~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~~~~~~w~~~ 411 (444)
..... ...++.....+|-++.|+|+|||.++|. +....+.++.+.+..-.|.++
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 32210 1122334678999999999999999884 788888888888888888875
No 283
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.66 E-value=0.13 Score=51.62 Aligned_cols=48 Identities=25% Similarity=0.235 Sum_probs=31.6
Q ss_pred cCCCC-CCCccEEEecccccccccc--HHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 101 RLPYP-SRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 101 ~lp~~-~~sFDlI~~~~~~l~~~~d--~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+++++ ...|++|+...-+++--.. ....++.+..++.|||.|++..+.
T Consensus 177 Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 177 RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred ccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 34444 3567877766544443211 124788888999999999998765
No 284
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.54 E-value=0.24 Score=46.09 Aligned_cols=147 Identities=11% Similarity=0.124 Sum_probs=83.8
Q ss_pred CCChhHHHh--hHhhHHHHHHHHH-HHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHh--
Q 013393 256 GVTTEEFHE--DIGIWQVRVVDYW-KQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY-- 329 (444)
Q Consensus 256 g~~~~~f~~--~~~~w~~~v~~y~-~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~-- 329 (444)
|+..+.|.+ +.-.|++++..-. ..+ .-..=..++|+.++-|.++..+...-----+|+=++. +.-+..+-
T Consensus 9 ~~~d~~~~~~~~~~~t~~~~r~~~l~~l----~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 9 GIPDEEFERDEEIPMTKEEIRALALSKL----RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred CCChHHHccCCCCCCCHHHHHHHHHHHc----CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 566667775 4458888886432 222 3233347999999999997755321000023444443 22333221
Q ss_pred --hccccc---c-ccccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHH
Q 013393 330 --DRGLIG---T-VHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKF 402 (444)
Q Consensus 330 --~rg~~~---~-~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~ 402 (444)
.-|+.. + -.|..+.++.++-.||++...+ ....+..++-++-|+|+|||.+++. -+.+.+.++...
T Consensus 85 ~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~-------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 157 (198)
T PRK00377 85 AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG-------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSA 157 (198)
T ss_pred HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC-------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHH
Confidence 123211 1 1233333334445688776533 1235788899999999999999882 245666777777
Q ss_pred HhhccceeEEe
Q 013393 403 ITALKWDGWLS 413 (444)
Q Consensus 403 ~~~~~w~~~~~ 413 (444)
++.+.++..+.
T Consensus 158 l~~~g~~~~~~ 168 (198)
T PRK00377 158 LENIGFNLEIT 168 (198)
T ss_pred HHHcCCCeEEE
Confidence 77666665443
No 285
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=93.51 E-value=0.14 Score=51.36 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=58.7
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccCCC-chh---HH----hhccccccccccccCCCCCCcccchhhccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSA-RLK---II----YDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~~-~l~---~~----~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
=+.|+|+.++.|.++.+|.....- .|+-++... -+. .+ ...+-+.+..-=.|.++. +.+||+|-+.+++
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL 198 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVL 198 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchh
Confidence 368999999999998877654221 244333221 111 11 001111111111233333 3489999999988
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
-+ .-+..++|-|+-|+|||||.+++.
T Consensus 199 ~H----~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 199 YH----RKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred hc----cCCHHHHHHHHHHhcCCCCEEEEE
Confidence 73 346889999999999999999985
No 286
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.46 E-value=0.22 Score=50.33 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=63.5
Q ss_pred CCCCCCCCCCeEEEECCC-cchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEec
Q 013393 37 DKLNNGGNIRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCS 115 (444)
Q Consensus 37 ~~L~~g~~~~rVLDVGCG-tG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~ 115 (444)
..+.|++ +|+=+|+| .|..+..++++. +..+...+.++...+.|++.|....+...|.....--.+.||+|+..
T Consensus 162 ~~~~pG~---~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 162 ANVKPGK---WVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred cCCCCCC---EEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 3555665 78888887 446777777631 23444445566777888888776655433222222112349999854
Q ss_pred cccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 116 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 116 ~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
- . ...+....+.||+||.+++...+
T Consensus 237 v------~--~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 237 V------G--PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C------C--hhhHHHHHHHHhcCCEEEEECCC
Confidence 3 2 45788889999999999997654
No 287
>PRK13699 putative methylase; Provisional
Probab=93.36 E-value=0.19 Score=48.16 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=49.1
Q ss_pred EEEecCccC--CCCCCCccEEEecccc-c--c-----------ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhH
Q 013393 94 LGVLGTKRL--PYPSRSFELAHCSRCR-I--D-----------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 157 (444)
Q Consensus 94 ~~~~d~~~l--p~~~~sFDlI~~~~~~-l--~-----------~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~ 157 (444)
+...|..+. .++++++|+|+..-=. + . +.+-....+.|++|+|||||.+++....
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~--------- 74 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW--------- 74 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc---------
Confidence 334454332 3567888888875200 0 0 0001247889999999999998863211
Q ss_pred HHHHHHHHHHHhcCeEEEeeecceeEeeccC
Q 013393 158 RIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 188 (444)
Q Consensus 158 ~~~~~l~~l~~~~gf~~v~~~~~~~~w~k~l 188 (444)
.....+...+++.||.+. ...+|.|+.
T Consensus 75 ~~~~~~~~al~~~GF~l~----~~IiW~K~~ 101 (227)
T PRK13699 75 NRVDRFMAAWKNAGFSVV----GHLVFTKNY 101 (227)
T ss_pred ccHHHHHHHHHHCCCEEe----eEEEEECCC
Confidence 112345667788899754 345798864
No 288
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.32 E-value=0.14 Score=44.59 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=26.3
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHH
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQ 81 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~ 81 (444)
++||+|||.|.++..+++. .+++++..+......+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 4899999999999888763 4777777765554444
No 289
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.01 E-value=0.25 Score=43.64 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=60.4
Q ss_pred ceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCC-C-CCCCccEEEeccccccccccH---------HHHHHHHHh
Q 013393 67 IIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWLQRD---------GILLLELDR 134 (444)
Q Consensus 67 V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp-~-~~~sFDlI~~~~~~l~~~~d~---------~~~L~ei~r 134 (444)
|.+.||-...+............ .++.+...+-+.+. + +++++|+++.+...++- .|. -.+++.+.+
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPg-gDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPG-GDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CT-S-TTSB--HHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCC-CCCCCCcCcHHHHHHHHHHHH
Confidence 56776665444333333322221 24666666655554 2 33489999988765554 221 278999999
Q ss_pred hcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHh---cCeEEEee
Q 013393 135 LLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS---MCWKIVSK 177 (444)
Q Consensus 135 vLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~---~gf~~v~~ 177 (444)
+|+|||.+.+..- ...+.+.+....+.+.++. ..|.+...
T Consensus 81 lL~~gG~i~iv~Y---~GH~gG~eE~~av~~~~~~L~~~~~~V~~~ 123 (140)
T PF06962_consen 81 LLKPGGIITIVVY---PGHPGGKEESEAVEEFLASLDQKEFNVLKY 123 (140)
T ss_dssp HEEEEEEEEEEE-----STCHHHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred hhccCCEEEEEEe---CCCCCCHHHHHHHHHHHHhCCcceEEEEEE
Confidence 9999999998643 3345566666677666665 34555443
No 290
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=92.85 E-value=0.25 Score=48.39 Aligned_cols=132 Identities=13% Similarity=0.181 Sum_probs=79.3
Q ss_pred hhHHHhhHhhHHHHHHHHHHHhhhhccCCceeEEEecccccch----hhhhccCC----CceEEEeccccCC-CchhHHh
Q 013393 259 TEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGG----FAAALKDK----DVWVMNVAPVRMS-ARLKIIY 329 (444)
Q Consensus 259 ~~~f~~~~~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~----f~a~~~~~----~~wv~~~~~~~~~-~~l~~~~ 329 (444)
...|-+|...|..-.+.....+......++--.|+|..++-|- .|-.|.+. +.|-..|+=+|-. .-|. ..
T Consensus 70 ~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~-~A 148 (264)
T smart00138 70 ETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALE-KA 148 (264)
T ss_pred CCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHH-HH
Confidence 3447777788877666554433222222334689999999995 45444331 1244456655533 3332 22
Q ss_pred hcccc-----------------------------------ccccccccCCCCCCcccchhhccccccccccCCCChhhhh
Q 013393 330 DRGLI-----------------------------------GTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLL 374 (444)
Q Consensus 330 ~rg~~-----------------------------------~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~ 374 (444)
.+|.- =..||-++.- .-+..||+|.+.++|..... =....++
T Consensus 149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf~~--~~~~~~l 225 (264)
T smart00138 149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYFDE--PTQRKLL 225 (264)
T ss_pred HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhCCH--HHHHHHH
Confidence 22221 0135555532 12578999999999874321 2356799
Q ss_pred hhhcccccCCcEEEEeccHH
Q 013393 375 IEMDRMLRPEGFVIIRDKSS 394 (444)
Q Consensus 375 ~e~drilrp~g~~~~rd~~~ 394 (444)
-++-|+|+|||++++-....
T Consensus 226 ~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 226 NRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred HHHHHHhCCCeEEEEECccc
Confidence 99999999999999976544
No 291
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.69 E-value=0.19 Score=46.94 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=22.0
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcC
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLA 73 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis 73 (444)
.+.|||||-|.+...|+.. -++|++|-
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR 93 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIR 93 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhh
Confidence 4999999999998888764 57777764
No 292
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=92.35 E-value=0.065 Score=53.01 Aligned_cols=113 Identities=14% Similarity=0.223 Sum_probs=71.3
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccCC-CchhH----HhhccccccccccccCCCC--CCcccchhhcccccccc
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLIGTVHDWCESFST--YPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~----~~~rg~~~~~~~~~~~~~~--y~~~~dl~h~~~~~~~~ 363 (444)
.++|+.+|.|.+|..|.... -.|+=+|.. .-+.. +-+.|+ .+ +--|..+.. .+..||+|-+..+|..+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l-~v-~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENL-NI-RTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCC-ce-EEEEechhcccccCCccEEEEcchhhhC
Confidence 79999999999998887653 245555543 33332 334565 21 111211211 27899999999888643
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEe---ccH-----------HHHHHHHHHHhhccceeEE
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIR---DKS-----------SIINYIRKFITALKWDGWL 412 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~r---d~~-----------~~~~~~~~~~~~~~w~~~~ 412 (444)
. .-.+..++-+|-|.|+|||++++- +.. ---++++++.+. |++..
T Consensus 198 ~--~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~ 256 (287)
T PRK12335 198 N--RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVK 256 (287)
T ss_pred C--HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEE
Confidence 2 235788999999999999996541 111 123556677766 88743
No 293
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=92.19 E-value=0.29 Score=47.95 Aligned_cols=102 Identities=16% Similarity=0.263 Sum_probs=58.9
Q ss_pred eeEEEecccccchhhhhccCC-C-c-eEEEeccccC-CCchhHHhhccc-cccccccccCCCCCCcccchhhcccccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-D-V-WVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~-~-wv~~~~~~~~-~~~l~~~~~rg~-~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~ 363 (444)
-.+|+|+.+|-|.+++.|.+. | . . .+|+=+|- ++.+...-+|.- +...+---+.++.=+.+||+|.+ +|+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~-~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~--~~~-- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITT-MQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIR--IYA-- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccC-CeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEE--ecC--
Confidence 356999999999999888642 1 1 1 13455553 355555544421 11111111233433578999975 333
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEeccH-HHHHHHHHH
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKF 402 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~rd~~-~~~~~~~~~ 402 (444)
.+ .+-|+.|+|+|||.+++.... .-+.+++..
T Consensus 161 ---~~----~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 ---PC----KAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred ---CC----CHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 12 346899999999999886432 233444443
No 294
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=92.12 E-value=0.095 Score=42.61 Aligned_cols=90 Identities=23% Similarity=0.342 Sum_probs=44.4
Q ss_pred EecccccchhhhhccCCCceEEEeccccC-CCchhH----Hhhcccc---ccccccccCCCCCC-cccchhhcccccccc
Q 013393 293 MDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGLI---GTVHDWCESFSTYP-RTYDLLHAWKVFSEI 363 (444)
Q Consensus 293 mDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~----~~~rg~~---~~~~~~~~~~~~y~-~~~dl~h~~~~~~~~ 363 (444)
+|..++-|.++..+.+.- --..++=+|- +.-|.. +.+.+.- =+-.+--+.+...+ .+||+|.+.++|..+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 467788888888886541 1223443442 333421 2222211 01112223334444 599999999999966
Q ss_pred ccCCCChhhhhhhhcccccCCcEE
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFV 387 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~ 387 (444)
. ++..++-.+-+.|+|||.+
T Consensus 80 -~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -E---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S----HHHHHHHHTTT-TSS-EE
T ss_pred -h---hHHHHHHHHHHHcCCCCCC
Confidence 3 4889999999999999975
No 295
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=91.91 E-value=0.36 Score=45.32 Aligned_cols=96 Identities=16% Similarity=0.251 Sum_probs=58.7
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhh----ccc--cccccccccCCC-CCCcccchhhccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL--IGTVHDWCESFS-TYPRTYDLLHAWKVF 360 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~----rg~--~~~~~~~~~~~~-~y~~~~dl~h~~~~~ 360 (444)
-.+++|+.++-|.++..+.... ..|+=++.. ..+...-. -|+ +-..+.-.+.++ ..|.+||++.+.+++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4589999999999988775432 123333321 22222211 122 111111111121 226799999999887
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
... .+...++-++.++|+|||.+++.+
T Consensus 123 ~~~----~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 123 EHV----PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HhC----CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 733 357889999999999999999865
No 296
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=91.69 E-value=0.24 Score=49.93 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=66.3
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhc----cc---cccccccccCCCCCCcccchhhccccccc
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~r----g~---~~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
.|+|..+|-|.++..|.... .+|+=+|.. ..+.+.-++ ++ |-..+.=.|.++..+.+||+|=+.+++.+
T Consensus 134 ~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 79999999999998887532 256666643 444444333 22 22233333556655689999999998875
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+. +...+|-|+=|+|+|||.++|-+
T Consensus 211 v~----d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 211 VA----NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred cC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 43 47899999999999999999864
No 297
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.54 E-value=0.11 Score=43.76 Aligned_cols=40 Identities=20% Similarity=0.519 Sum_probs=27.4
Q ss_pred CccEEEecccccccc----cc--HHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 108 SFELAHCSRCRIDWL----QR--DGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 108 sFDlI~~~~~~l~~~----~d--~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.||+|.|-. +.-|+ -| ...+|+.+++.|+|||.|++...+
T Consensus 1 ~yDvilclS-VtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLS-VTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEE-eeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 489999865 34442 12 237999999999999999996443
No 298
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=91.36 E-value=0.15 Score=45.90 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=39.9
Q ss_pred cccccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH
Q 013393 336 TVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 393 (444)
Q Consensus 336 ~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~ 393 (444)
..+-=++.++.-+.+||++=+...+..+ .+....|-||-|+|+|||.++|-|-.
T Consensus 30 ~~~~d~~~lp~~~~~fD~v~~~~~l~~~----~d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 30 WIEGDAIDLPFDDCEFDAVTMGYGLRNV----VDRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred EEEechhhCCCCCCCeeEEEecchhhcC----CCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 3344466677667899999776555422 25788999999999999999987643
No 299
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=91.31 E-value=2.8 Score=43.27 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=56.1
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccc-hHHHHHHHHHcCCCcE-EEEecCccCCCCCCCccEEEecccccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDV-HENQIQFALERGIPST-LGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 124 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~di-s~a~i~~a~e~~~~~~-~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d 124 (444)
+||=++=..|.++..++...++.+ +..-+ +.+..+.++.++.+.. +...+... ++| +.+|+|+... ---...
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~-~~~-~~~d~vl~~~--PK~~~~ 120 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI--GDSYISELATRENLRLNGIDESSVKFLDSTA-DYP-QQPGVVLIKV--PKTLAL 120 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee--ehHHHHHHHHHHHHHHcCCCcccceeecccc-ccc-CCCCEEEEEe--CCCHHH
Confidence 699999999999999987665432 22222 3344445555555433 33333221 233 4599987432 111122
Q ss_pred HHHHHHHHHhhcCCCeEEEEEc
Q 013393 125 DGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 125 ~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.+..+..+.++|.||+.++...
T Consensus 121 l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 121 LEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHHhhCCCCCEEEEEE
Confidence 3467888899999999987643
No 300
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=91.22 E-value=1.6 Score=42.30 Aligned_cols=99 Identities=20% Similarity=0.139 Sum_probs=56.2
Q ss_pred CCeEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHH------H-HHcCCCcEEEEecCccCC---CCCCC-cc
Q 013393 45 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQF------A-LERGIPSTLGVLGTKRLP---YPSRS-FE 110 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~------a-~e~~~~~~~~~~d~~~lp---~~~~s-FD 110 (444)
..+||++|+|+|..+..++. .++...|....- ...... + .+.+..+.+...+-...+ +-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~--~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV--ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhH--HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 45799999999966655544 244333332211 111111 1 111334444444322211 11223 99
Q ss_pred EEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 111 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 111 lI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+|+++.|+. .....+.++.-+...|-.+|.+.+..
T Consensus 165 lilasDvvy-~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 165 LILASDVVY-EEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEEeeeee-cCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 999999744 45777888999999999999666643
No 301
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.11 E-value=0.76 Score=48.69 Aligned_cols=121 Identities=14% Similarity=0.109 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh------C--CceEEEcCcccchHHHHHHHHHcCCCc
Q 013393 21 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS------H--DIIAMSLAPNDVHENQIQFALERGIPS 92 (444)
Q Consensus 21 ~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~------~--~V~gvdis~~dis~a~i~~a~e~~~~~ 92 (444)
++.|.+.+.+.|.-...+- ..+...+|+=+|.|-|-+....++ + .+++++-.|..+...+-...+.-...+
T Consensus 345 Y~~Yq~Ai~~AL~Drvpd~-~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~V 423 (649)
T KOG0822|consen 345 YDQYQQAILKALLDRVPDE-SAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRV 423 (649)
T ss_pred HHHHHHHHHHHHHhhCccc-ccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCee
Confidence 4556665555553211111 112255789999999977665544 2 456777777665444332333335678
Q ss_pred EEEEecCccCCCCCCCccEEEeccccccccccH--HHHHHHHHhhcCCCeEEE
Q 013393 93 TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFV 143 (444)
Q Consensus 93 ~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~--~~~L~ei~rvLkPGG~lv 143 (444)
.+...|+..++-|.+..|++++-. +..+..+. .+.|.-+.+.|||.|..+
T Consensus 424 tii~~DMR~w~ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 424 TIISSDMRKWNAPREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred EEEeccccccCCchhhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEc
Confidence 888999999986568899998644 45553332 478999999999998766
No 302
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=90.88 E-value=0.17 Score=47.12 Aligned_cols=139 Identities=15% Similarity=0.248 Sum_probs=79.5
Q ss_pred hccCCceeEEEecccccchhhhhccCC--CceEEEeccccCCCchhHHhhc--cc--cc-cccccccCCCCCCcccchhh
Q 013393 283 VAQKNTFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMSARLKIIYDR--GL--IG-TVHDWCESFSTYPRTYDLLH 355 (444)
Q Consensus 283 ~l~~~~~rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~~~~l~~~~~r--g~--~~-~~~~~~~~~~~y~~~~dl~h 355 (444)
.|...+|+++++...+-|-|.+.|... .+-++-++|.- |...-+| |+ |- .-.|-.+..| +.+|||||
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~A----l~~Ar~Rl~~~~~V~~~~~dvp~~~P--~~~FDLIV 111 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRA----LARARERLAGLPHVEWIQADVPEFWP--EGRFDLIV 111 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHH----HHHHHHHTTT-SSEEEEES-TTT-----SS-EEEEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHH----HHHHHHhcCCCCCeEEEECcCCCCCC--CCCeeEEE
Confidence 478999999999999999999999754 45555555432 1111111 11 10 1112233333 68999999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEeccHH----------HHHHHHHHHhhccceeEEeccccccCCCCCC
Q 013393 356 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------IINYIRKFITALKWDGWLSEVEPRIDALSSS 425 (444)
Q Consensus 356 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 425 (444)
.+-++--+. +.-++..++-.|...|+|||.+|+=.-.+ =.+-|..+++..-=++......+.+.
T Consensus 112 ~SEVlYYL~-~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~----- 185 (201)
T PF05401_consen 112 LSEVLYYLD-DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSP----- 185 (201)
T ss_dssp EES-GGGSS-SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SST-----
T ss_pred EehHhHcCC-CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCC-----
Confidence 999987332 22346678888999999999999943322 13455566666555665444433322
Q ss_pred CceEEEEE
Q 013393 426 EERVLIAK 433 (444)
Q Consensus 426 ~~~~l~~~ 433 (444)
.|.-|+++
T Consensus 186 ~~~~~~~~ 193 (201)
T PF05401_consen 186 NEDCLLAR 193 (201)
T ss_dssp TSEEEEEE
T ss_pred CCceEeee
Confidence 46666654
No 303
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.41 E-value=4.2 Score=36.93 Aligned_cols=118 Identities=18% Similarity=0.226 Sum_probs=71.9
Q ss_pred ECCCcchHHHHHhhC-----CceEEEcCcccch-------HHHHHHHHHcCCCcEEEEecCccCC----CCCCCccEEEe
Q 013393 51 VGCGVASFGAYLLSH-----DIIAMSLAPNDVH-------ENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHC 114 (444)
Q Consensus 51 VGCGtG~~a~~La~~-----~V~gvdis~~dis-------~a~i~~a~e~~~~~~~~~~d~~~lp----~~~~sFDlI~~ 114 (444)
||=|.=+|+..|+++ .+++..+...+.- ...++.-++.+..+.+ -.|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~-~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLH-GVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCcccc-CCCCCcccccccccCCcCCEEEE
Confidence 555666888888773 4566655544311 1222222333554444 34555544 24688999998
Q ss_pred ccccccccc------c---------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 115 SRCRIDWLQ------R---------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 115 ~~~~l~~~~------d---------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
++ +|.. + ...+|+.+.++|+++|.+.++.....++ ..| .+.+++++.|+.+....
T Consensus 82 NF---PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-----~~W-~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 82 NF---PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-----DSW-NIEELAAEAGLVLVRKV 151 (166)
T ss_pred eC---CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-----ccc-cHHHHHHhcCCEEEEEe
Confidence 75 2222 1 1268899999999999999986543322 234 35688999999877654
No 304
>PRK06202 hypothetical protein; Provisional
Probab=90.39 E-value=1 Score=42.87 Aligned_cols=104 Identities=12% Similarity=0.199 Sum_probs=66.1
Q ss_pred ccCCceeEEEecccccchhhhhccC---CCceEEEeccccC-CCchhHHhhccc---cccccccccCCCCCCcccchhhc
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLKIIYDRGL---IGTVHDWCESFSTYPRTYDLLHA 356 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~---~~~wv~~~~~~~~-~~~l~~~~~rg~---~~~~~~~~~~~~~y~~~~dl~h~ 356 (444)
+...+-..|+|..+|.|.++..|.+ +.-...+|+-+|- ++-+....++.- +-...--++.++.-+.+||++-+
T Consensus 56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred cCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEE
Confidence 4445567899999999999877753 1111235777774 455555444421 11112224555555789999999
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 357 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 357 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+.+|.+.... .+..+|-||-|++| |.++|.|
T Consensus 136 ~~~lhh~~d~--~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 136 NHFLHHLDDA--EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CCeeecCChH--HHHHHHHHHHHhcC--eeEEEec
Confidence 9988754321 25678999999999 5666655
No 305
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=90.39 E-value=0.19 Score=41.57 Aligned_cols=96 Identities=22% Similarity=0.292 Sum_probs=59.2
Q ss_pred EEEecccccchhhhhccC-CCceEEEeccccC-CCchhHHh----hccccccc----cccccCCCCCCcccchhhccccc
Q 013393 291 NVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIY----DRGLIGTV----HDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~-~~~l~~~~----~rg~~~~~----~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
.|+|+.++.|.++.+|.. .|-.- |+=++- +..+...- +.++-.-. .|+.+. ...+..||++.+++ |
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~--v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~~-~ 79 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGAR--VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFD-PDFLEPFDLVICSG-F 79 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSE--EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGG-TTTSSCEEEEEECS-G
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCE--EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccC-cccCCCCCEEEECC-C
Confidence 589999999999998876 23322 444443 33343322 23332222 333122 44455699999999 4
Q ss_pred c--ccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 361 S--EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 361 ~--~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+ .+... .....++-++-+.|+|||.++|.+
T Consensus 80 ~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 11111 345677888999999999999975
No 306
>PRK14968 putative methyltransferase; Provisional
Probab=90.31 E-value=0.65 Score=42.08 Aligned_cols=118 Identities=15% Similarity=0.229 Sum_probs=74.3
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHH---------hhccccccccccccCCCCCCcccchhhccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII---------YDRGLIGTVHDWCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~---------~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~ 358 (444)
-..++|+.++-|.++..|.... -+|+=++- ++.+... -+||+.-+-+|+.+.++. .+||++=++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~ 98 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNP 98 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECC
Confidence 3479999999999999987652 25555553 2333332 122244455677776653 4799985544
Q ss_pred cccccc-----------------cCCCChhhhhhhhcccccCCcEEEEecc-HHHHHHHHHHHhhccceeE
Q 013393 359 VFSEIE-----------------ERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDGW 411 (444)
Q Consensus 359 ~~~~~~-----------------~~~c~~~~~~~e~drilrp~g~~~~rd~-~~~~~~~~~~~~~~~w~~~ 411 (444)
-|.... .....+..++-++.|+|+|+|.+++--. ..-.+++.+.+....|++.
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAE 169 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeee
Confidence 332100 0012356789999999999998866322 2235678888888888764
No 307
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=90.29 E-value=1.3 Score=42.88 Aligned_cols=135 Identities=18% Similarity=0.319 Sum_probs=77.2
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhc---ccc---c-cccccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR---GLI---G-TVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~r---g~~---~-~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
..++|+.++-|.++.+|... |-+ +|+-++. +..+...-++ ++. - +-.|+.+++. +.+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~--~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDA--EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 47999999999999888643 222 3444443 2333332221 211 1 1234444443 4789999775433
Q ss_pred cccc------cC----C------------CChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhccceeEEeccccc
Q 013393 361 SEIE------ER----G------------CSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPR 418 (444)
Q Consensus 361 ~~~~------~~----~------------c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~~~~~~~~~ 418 (444)
.... .. . =.+..++-++-++|+|||++++.-...--+.++++++...+.. +... .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~-v~~~--~ 262 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFAD-VETR--K 262 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCce-eEEe--c
Confidence 2100 00 0 0124566778899999999999755555667888887666642 1111 1
Q ss_pred cCCCCCCCceEEEEEe
Q 013393 419 IDALSSSEERVLIAKK 434 (444)
Q Consensus 419 ~~~~~~~~~~~l~~~k 434 (444)
.-.+.+++++++|
T Consensus 263 ---d~~~~~r~~~~~~ 275 (275)
T PRK09328 263 ---DLAGRDRVVLGRR 275 (275)
T ss_pred ---CCCCCceEEEEEC
Confidence 1235789998865
No 308
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=90.11 E-value=0.6 Score=42.89 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=67.2
Q ss_pred eEEEecccccchhhhhccCC-----CceEEEeccccCCCchhHHhhccccccccccccCC-------CCCCcccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESF-------STYPRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-----~~wv~~~~~~~~~~~l~~~~~rg~~~~~~~~~~~~-------~~y~~~~dl~h~~ 357 (444)
.+|+|+.+|-|+++.++... .++.--.-|. .. -.++--+..|..+.. .+-+.++|++=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~-----~~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM-----KP---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc-----cc---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 48999999999997766432 2443322221 10 012222223544321 0113578887664
Q ss_pred ccc------cc-cccCCCChhhhhhhhcccccCCcEEEEe-----ccHHHHHHHHHHHhhccceeEEeccccccCCCCCC
Q 013393 358 KVF------SE-IEERGCSFEDLLIEMDRMLRPEGFVIIR-----DKSSIINYIRKFITALKWDGWLSEVEPRIDALSSS 425 (444)
Q Consensus 358 ~~~------~~-~~~~~c~~~~~~~e~drilrp~g~~~~r-----d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 425 (444)
+.. +. .....+..+.+|-++-|+|+|||.+++- +-.+++.+++.. + |++.+.-.- .....+
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~---~-~~~~~~~~~---~~~~~~ 178 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL---F-EKVKVTKPQ---ASRKRS 178 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh---h-ceEEEeCCC---CCCccc
Confidence 321 10 0001123578899999999999999982 223455444442 2 444432111 111224
Q ss_pred CceEEEEE
Q 013393 426 EERVLIAK 433 (444)
Q Consensus 426 ~~~~l~~~ 433 (444)
.|+.+||.
T Consensus 179 ~~~~~~~~ 186 (188)
T TIGR00438 179 AEVYIVAK 186 (188)
T ss_pred ceEEEEEe
Confidence 68999985
No 309
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.76 E-value=0.24 Score=47.13 Aligned_cols=111 Identities=18% Similarity=0.247 Sum_probs=63.7
Q ss_pred CCCeEEEECCCcchHHHHHhhC-------------CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC--------
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH-------------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-------- 102 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~-------------~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-------- 102 (444)
..+|+.|+.+..|+|+..|.++ .++++|+-+...-+ .+.-...|+...
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~-----------GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIE-----------GVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccC-----------ceEEeecccCCHhHHHHHHH
Confidence 3568999999999999988762 26677766532111 112223343321
Q ss_pred CCCCCCccEEEeccc----cccccccH------HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHh
Q 013393 103 PYPSRSFELAHCSRC----RIDWLQRD------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS 169 (444)
Q Consensus 103 p~~~~sFDlI~~~~~----~l~~~~d~------~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~ 169 (444)
-|..++.|+|+|-.+ .+|-+... -.+|.-...+|||||.|+-- ..+.......+.++..+.++
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK----ifRg~~tslLysql~~ff~k 182 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK----IFRGRDTSLLYSQLRKFFKK 182 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh----hhccCchHHHHHHHHHHhhc
Confidence 145568899999531 23322222 14555667899999999841 11222222345566666664
No 310
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=89.73 E-value=0.88 Score=43.98 Aligned_cols=108 Identities=16% Similarity=0.123 Sum_probs=64.3
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHh----hccccccccccccCCCCCCcccchhhccccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 364 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~----~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~ 364 (444)
..|+|+.+|.|..+.++..... -.|+-+|- +.-+...- ..|+-...+-.+. ..+||++.|+-...
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-----~~~fD~Vvani~~~--- 190 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-----DLKADVIVANILAN--- 190 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-----CCCcCEEEEcCcHH---
Confidence 5799999999988777654321 12333332 22333222 2233110110010 11799998764322
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEecc-HHHHHHHHHHHhhccceeE
Q 013393 365 ERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDGW 411 (444)
Q Consensus 365 ~~~c~~~~~~~e~drilrp~g~~~~rd~-~~~~~~~~~~~~~~~w~~~ 411 (444)
.+..++-++-|.|+|||.+++.+. .+-.+++.+.++...++..
T Consensus 191 ----~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~ 234 (250)
T PRK00517 191 ----PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLD 234 (250)
T ss_pred ----HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEE
Confidence 245677899999999999999764 3345677777888778774
No 311
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=89.72 E-value=0.52 Score=46.67 Aligned_cols=111 Identities=12% Similarity=0.141 Sum_probs=65.3
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhh----ccccccccccccC-CCCCCcccchhhcccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGLIGTVHDWCES-FSTYPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~----rg~~~~~~~~~~~-~~~y~~~~dl~h~~~~~~~~ 363 (444)
..|+|+.+|.|..+.++..... -.|+=++- +.-+....+ .|+-.....-+.. ....+..||++.++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 5799999999998766654432 13444442 233332222 1221112222221 222356899999876543
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEecc-HHHHHHHHHHHhhcccee
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDG 410 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~rd~-~~~~~~~~~~~~~~~w~~ 410 (444)
.+..++-++-|+|+|||++++-.- .+-.+++.+.+++- |+.
T Consensus 237 -----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~ 278 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTV 278 (288)
T ss_pred -----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cce
Confidence 256788899999999999999542 22344555555554 665
No 312
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=89.72 E-value=0.99 Score=43.68 Aligned_cols=129 Identities=22% Similarity=0.238 Sum_probs=67.1
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
+.+|+|||||.=-++...... .++|.||+...+.-.. .+....+.+..+.+.|...-+ +....|+.+..- +++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~-~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK-~lp 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN-AFLAVLGVPHDARVRDLLSDP-PKEPADLALLLK-TLP 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH-HHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET--HH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH-HHHHhhCCCcceeEeeeeccC-CCCCcchhhHHH-HHH
Confidence 459999999998877766542 5677776654332111 222334777888888855543 346799998765 355
Q ss_pred ccccHH-HHHHHHHhhcCCCeEEEEEcCCC--CCCChhhHH-HHHHHHHHHHhcCeEEEee
Q 013393 121 WLQRDG-ILLLELDRLLRPGGYFVYSSPEA--YAHDPENRR-IWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 121 ~~~d~~-~~L~ei~rvLkPGG~lvis~p~~--~~~~~~~~~-~~~~l~~l~~~~gf~~v~~ 177 (444)
-++... ..-.++...++. =.+++|-|.- ..+..--.. .-..++.++..-+|.+...
T Consensus 183 ~le~q~~g~g~~ll~~~~~-~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~ 242 (251)
T PF07091_consen 183 CLERQRRGAGLELLDALRS-PHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRL 242 (251)
T ss_dssp HHHHHSTTHHHHHHHHSCE-SEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEE
T ss_pred HHHHHhcchHHHHHHHhCC-CeEEEeccccccccCccccccCHHHHHHHhcccCCceeeee
Confidence 443332 122233333332 2455554431 111111111 2247788888889975443
No 313
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.57 E-value=0.81 Score=43.71 Aligned_cols=108 Identities=18% Similarity=0.294 Sum_probs=56.9
Q ss_pred eeecCCC-CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHH
Q 013393 7 KINFPGG-GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQ 81 (444)
Q Consensus 7 ~~~fpg~-gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~ 81 (444)
+..||.+ ---...|...|++.++.+|.-..+.+. +.+ -++||||.|.-..--.+--+ ..+|.|+++..++.++
T Consensus 42 ~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~-~~~-i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~ 119 (292)
T COG3129 42 YWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIP-GKN-IRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAK 119 (292)
T ss_pred EecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCC-cCc-eEEEeeccCcccccccccceeecceeecCccCHHHHHHHH
Confidence 3445554 112245678899999999987665554 333 36999998865432222211 3445555554444444
Q ss_pred HHHHHHcCCC--cEEEEecCcc--CC---CCCCCccEEEecc
Q 013393 82 IQFALERGIP--STLGVLGTKR--LP---YPSRSFELAHCSR 116 (444)
Q Consensus 82 i~~a~e~~~~--~~~~~~d~~~--lp---~~~~sFDlI~~~~ 116 (444)
.......+.. +++....... ++ -..+.||+..|+-
T Consensus 120 ~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNP 161 (292)
T COG3129 120 AIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNP 161 (292)
T ss_pred HHHHcCcchhhheeEEeccCccccccccccccceeeeEecCC
Confidence 3333222222 2333222111 11 1257899999987
No 314
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=89.43 E-value=0.53 Score=44.66 Aligned_cols=95 Identities=14% Similarity=0.263 Sum_probs=61.4
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhc----cccccc--cccccCCCCCCcccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTV--HDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~r----g~~~~~--~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
..++|+.++-|.++..+.... .+|+=++.. +.+...-++ |+-..+ .+..+-....+-+||+|.++++|..
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 359999999999998887643 345555432 333322222 331222 2333222123468999999988873
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
. -+...+|-++.|+|+|||.+++.+
T Consensus 127 ~----~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 127 V----PDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred c----CCHHHHHHHHHHHcCCCcEEEEEe
Confidence 3 247789999999999999999864
No 315
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=89.10 E-value=2.8 Score=40.38 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=66.0
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCC----CCCC
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY----PSRS 108 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~----~~~s 108 (444)
.++|+. +||=+|+++|....+..+ .-|.++++++..- ...++.|+++ .++.-++.|+. .|. .-.-
T Consensus 153 hikpGs---KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG-RdL~nmAkkR-tNiiPIiEDAr-hP~KYRmlVgm 226 (317)
T KOG1596|consen 153 HIKPGS---KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG-RDLINMAKKR-TNIIPIIEDAR-HPAKYRMLVGM 226 (317)
T ss_pred eecCCc---eEEEeeccCCceeehhhcccCCCceEEEEEecccch-HHHHHHhhcc-CCceeeeccCC-Cchheeeeeee
Confidence 567776 899999999987777765 2578888887533 3344555554 44444455542 331 1235
Q ss_pred ccEEEeccccccccccH-HHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 109 FELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 109 FDlI~~~~~~l~~~~d~-~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
.|+|++-- .. +|. ..+..++...||+||-|+++....
T Consensus 227 VDvIFaDv---aq-pdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 227 VDVIFADV---AQ-PDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred EEEEeccC---CC-chhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 67777532 22 344 356778899999999999976543
No 316
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=88.99 E-value=0.27 Score=47.46 Aligned_cols=97 Identities=13% Similarity=0.212 Sum_probs=59.4
Q ss_pred eEEEecccccchhhhhccC---CCceEEEeccccC-CCchhHHhhc----cc---cccccccccCCCCCCcccchhhccc
Q 013393 290 RNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~---~~~wv~~~~~~~~-~~~l~~~~~r----g~---~~~~~~~~~~~~~y~~~~dl~h~~~ 358 (444)
..|+|+.+|.|..+.+|.. .|-| .|+=++. +.-|...-+| |+ +-+.+.-.+.++. ..+|++-+..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--~~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC--CCCCEEehhh
Confidence 3699999999999877754 3444 3544443 3334333222 22 2222222222221 3488877766
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
.+..+.. .....++-||-|.|+|||.+++.|.
T Consensus 134 ~l~~l~~--~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLEP--SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCCH--HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6653321 2357899999999999999999763
No 317
>PTZ00146 fibrillarin; Provisional
Probab=88.72 E-value=0.33 Score=48.17 Aligned_cols=97 Identities=13% Similarity=0.218 Sum_probs=57.7
Q ss_pred ccCCceeEEEecccccchhhhhccCC-----CceEEEeccccCCCchhHHhhc-cccccccccccCCCCCC---cccchh
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCESFSTYP---RTYDLL 354 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~-----~~wv~~~~~~~~~~~l~~~~~r-g~~~~~~~~~~~~~~y~---~~~dl~ 354 (444)
|..+ ..|+|..++.|+|+..|.+. .|+-.-+-|....+-+.+.-+| +++-+..|-+.+. .|+ -++|+|
T Consensus 130 IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVI 206 (293)
T ss_pred cCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEE
Confidence 4444 37999999999988777642 2444432222111234444343 5666777766542 122 356666
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 355 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 355 h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
|++..+. =+...+++|+.|+|+|+|.++|
T Consensus 207 -----~~Dva~p-dq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 207 -----FADVAQP-DQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred -----EEeCCCc-chHHHHHHHHHHhccCCCEEEE
Confidence 4433211 1344567799999999999998
No 318
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=88.58 E-value=0.64 Score=44.45 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=68.0
Q ss_pred hhccCCceeEEEecccccchhhhhcc-CCCceEEEeccccCCCchhHHhhccccccccccccCCCCCCcccchhhccccc
Q 013393 282 TVAQKNTFRNVMDMNSNLGGFAAALK-DKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 282 ~~l~~~~~rnvmDm~a~~G~f~a~~~-~~~~wv~~~~~~~~~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
.....++++.++|...+.|.+++++. ..|-. .++-.|-|..+..+.+.. .+-.-=..-|.++|. ||++...+++
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l--~~~v~Dlp~v~~~~~~~~--rv~~~~gd~f~~~P~-~D~~~l~~vL 168 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPNL--RATVFDLPEVIEQAKEAD--RVEFVPGDFFDPLPV-ADVYLLRHVL 168 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTTS--EEEEEE-HHHHCCHHHTT--TEEEEES-TTTCCSS-ESEEEEESSG
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCCC--cceeeccHhhhhcccccc--ccccccccHHhhhcc-ccceeeehhh
Confidence 45677889999999999999999996 33433 233344444444444410 111111223577788 9999999999
Q ss_pred cccccCCCChhhhhhhhcccccCC--cEEEEec
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPE--GFVIIRD 391 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~--g~~~~rd 391 (444)
-.+... ....||--+=+.|+|| |.++|-|
T Consensus 169 h~~~d~--~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 169 HDWSDE--DCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GGS-HH--HHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhcchH--HHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 855433 4677899999999999 9999854
No 319
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=88.51 E-value=0.76 Score=46.73 Aligned_cols=115 Identities=12% Similarity=0.034 Sum_probs=71.7
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhcc---ccccccccccCCCCCCcccchhhccccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRG---LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 364 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~rg---~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~ 364 (444)
..|+|+.++.|.++..+.+. +- -+|+=+|. ++.|...-++. =+-+.+.-.+.++.-+.+||++-+.+.+....
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 47999999999988776432 21 24444443 34444433321 02223333344454458999998887775322
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEeccH-----------------HHHHHHHHHHhhcccee
Q 013393 365 ERGCSFEDLLIEMDRMLRPEGFVIIRDKS-----------------SIINYIRKFITALKWDG 410 (444)
Q Consensus 365 ~~~c~~~~~~~e~drilrp~g~~~~rd~~-----------------~~~~~~~~~~~~~~w~~ 410 (444)
+...++-|+-|+|+|||.+++-+.. ...+++.+++++..++.
T Consensus 193 ----d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 193 ----DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeE
Confidence 3567899999999999999774321 12466777777777764
No 320
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=88.48 E-value=0.27 Score=47.09 Aligned_cols=96 Identities=11% Similarity=0.133 Sum_probs=58.4
Q ss_pred eEEEecccccchhhhhccCC---CceEEEeccccC-CCchhHHhh----ccc---cc-cccccccCCCCCCcccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRM-SARLKIIYD----RGL---IG-TVHDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~---~~wv~~~~~~~~-~~~l~~~~~----rg~---~~-~~~~~~~~~~~y~~~~dl~h~~ 357 (444)
..++|+.+|-|.++..|.+. |-+ +|+-++- ++-|...-+ .+. +- +..|.++ ++ . ..+|++.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~--~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~-~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VE-I-KNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC-C-CCCCEEeee
Confidence 46999999999998877642 332 3555553 333333222 121 11 1123322 22 1 358988877
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
..+..+.. =+...+|-+|-|+|+|||.+++.|.
T Consensus 130 ~~l~~~~~--~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPP--EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCH--HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 76653221 1256789999999999999999864
No 321
>PRK05785 hypothetical protein; Provisional
Probab=88.31 E-value=0.85 Score=43.48 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=62.0
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccccccccccccCCCCCCcccchhhccccccccccCCC
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGC 368 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c 368 (444)
..|+|..+|-|-++..|.+.- --+|+=+|- ++-|...-+++ ...+.-.|.+|.=+.+||++-+...+-. --
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~----~~ 124 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHA----SD 124 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhc----cC
Confidence 589999999999998887642 125666664 34455444442 2344556666665689999999776542 23
Q ss_pred ChhhhhhhhcccccCCc
Q 013393 369 SFEDLLIEMDRMLRPEG 385 (444)
Q Consensus 369 ~~~~~~~e~drilrp~g 385 (444)
+.+..+-||-|+|||.+
T Consensus 125 d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 125 NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CHHHHHHHHHHHhcCce
Confidence 58899999999999953
No 322
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=88.19 E-value=0.56 Score=36.70 Aligned_cols=94 Identities=20% Similarity=0.329 Sum_probs=56.4
Q ss_pred EEecccccchhhhhccCCCceEEEeccccCC-CchhHHh---hcc---ccccccccccCCC-CCCcccchhhcccccccc
Q 013393 292 VMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY---DRG---LIGTVHDWCESFS-TYPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 292 vmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~---~rg---~~~~~~~~~~~~~-~y~~~~dl~h~~~~~~~~ 363 (444)
++|+.++.|+++..+...+. .+++-.+.. +-+...- ..+ .+=.++.=+..+. .-+.+||++.+++.+...
T Consensus 2 ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 2 VLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred eEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 68999999999888876321 233333322 1111111 111 1222222222222 246789999999988731
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
.. ....++-.+.+.|||+|.+++.
T Consensus 80 ~~---~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VE---DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hh---HHHHHHHHHHHHcCCCCEEEEE
Confidence 22 4778888889999999999986
No 323
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=87.87 E-value=1.1 Score=42.14 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=67.4
Q ss_pred eEEEecccccchhhhhccCC--CceEEEeccccC-C-CchhHHhhcccccccccccc---------CCCCCCcccchhhc
Q 013393 290 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-S-ARLKIIYDRGLIGTVHDWCE---------SFSTYPRTYDLLHA 356 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~-~~l~~~~~rg~~~~~~~~~~---------~~~~y~~~~dl~h~ 356 (444)
..|+|..++.|+|+..+.+. +. -.|+-++- + +.+ .|+.=+-.|..+ .+. +.+||+|-+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~--~~V~aVDi~~~~~~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~S 123 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDK--GRVIACDILPMDPI-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVMS 123 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCC--ceEEEEecccccCC-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEec
Confidence 47999999999997655432 10 02222221 1 111 122111122222 122 357888887
Q ss_pred cccccccccC-------CCChhhhhhhhcccccCCcEEEEe-----ccHHHHHHHHHHHhhccceeEEeccccccCCCCC
Q 013393 357 WKVFSEIEER-------GCSFEDLLIEMDRMLRPEGFVIIR-----DKSSIINYIRKFITALKWDGWLSEVEPRIDALSS 424 (444)
Q Consensus 357 ~~~~~~~~~~-------~c~~~~~~~e~drilrp~g~~~~r-----d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 424 (444)
+......... -+..+.+|-|+=|+|+|||.+++- +..+++.++++.....+ ...+..+- ..
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~------~~Kp~ssr-~~ 196 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVK------VRKPDSSR-AR 196 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEE------EECCcccc-cc
Confidence 6432210000 011357899999999999999993 33455555444333322 23333322 23
Q ss_pred CCceEEEEEe
Q 013393 425 SEERVLIAKK 434 (444)
Q Consensus 425 ~~~~~l~~~k 434 (444)
+.|..+||..
T Consensus 197 s~e~~~~~~~ 206 (209)
T PRK11188 197 SREVYIVATG 206 (209)
T ss_pred CceeEEEeec
Confidence 5799999864
No 324
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=87.77 E-value=0.62 Score=44.47 Aligned_cols=117 Identities=19% Similarity=0.348 Sum_probs=72.6
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhH----Hhhccc--ccccc-ccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKI----IYDRGL--IGTVH-DWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~----~~~rg~--~~~~~-~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
..++|+.+|-|.++.++... |-+ +|+-++. +..+.. +-..|+ +-+++ |+-+.++ +.+||+|-++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA--RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCCC
Confidence 37999999999999988754 322 4444443 233332 222343 22222 3323333 4689999886544
Q ss_pred ccc------ccCCC----------------ChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhcccee
Q 013393 361 SEI------EERGC----------------SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDG 410 (444)
Q Consensus 361 ~~~------~~~~c----------------~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~ 410 (444)
... ..... ....++-++-|+|+|||.+++.......++++++++...++.
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFAD 236 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCc
Confidence 411 00000 023567789999999999999887777788888888877753
No 325
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.70 E-value=16 Score=34.78 Aligned_cols=117 Identities=10% Similarity=0.082 Sum_probs=74.0
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCC--cEEEEecCccCCCC-CCCccEEEeccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYP-SRSFELAHCSRCRI 119 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~lp~~-~~sFDlI~~~~~~l 119 (444)
++.||||--|.++.+|.+. .+++.|+++.-+..+..++.+ .+.. .....+|. -.++. +..+|.|+...+..
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~-~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK-NNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh-cCCcceEEEeccCC-ccccCccCCcCEEEEeCCcH
Confidence 5999999999999999884 567888888776555544443 3332 33334443 12233 34799988766321
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.-....|.+-.+.|+.==+++++... .-..+++.+...+|.+..+.
T Consensus 97 ---~lI~~ILee~~~~l~~~~rlILQPn~----------~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 97 ---TLIREILEEGKEKLKGVERLILQPNI----------HTYELREWLSANSYEIKAET 142 (226)
T ss_pred ---HHHHHHHHHhhhhhcCcceEEECCCC----------CHHHHHHHHHhCCceeeeee
Confidence 22346677777777644467764221 11257788889999887664
No 326
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.64 E-value=0.16 Score=45.41 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=37.4
Q ss_pred ccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 341 CESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 341 ~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
=..|. ||+-|+|-|.|++.+++-+ +...-+=|-.|+|||||++-|
T Consensus 40 e~~F~--dns~d~iyaeHvlEHlt~~--Eg~~alkechr~Lrp~G~Lri 84 (185)
T COG4627 40 ESMFE--DNSVDAIYAEHVLEHLTYD--EGTSALKECHRFLRPGGKLRI 84 (185)
T ss_pred hccCC--CcchHHHHHHHHHHHHhHH--HHHHHHHHHHHHhCcCcEEEE
Confidence 33455 6999999999999877643 577888999999999999977
No 327
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=87.63 E-value=0.61 Score=42.10 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=44.5
Q ss_pred CCCccEEEeccccccccc--------c---HHHHHHHHHhhcCCCeEEEEEcCCCCCCChh-hHHHHHHHHHHHHhcCeE
Q 013393 106 SRSFELAHCSRCRIDWLQ--------R---DGILLLELDRLLRPGGYFVYSSPEAYAHDPE-NRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~~--------d---~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~-~~~~~~~l~~l~~~~gf~ 173 (444)
.++||.+.|.. .++|.- | ..+.+.++.++|||||.|+++.|-.-..... ..+++..+.-.+--.||+
T Consensus 61 ~~~fD~~as~~-siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe 139 (177)
T PF03269_consen 61 AGSFDFAASFS-SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFE 139 (177)
T ss_pred hccchhhheec-hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcE
Confidence 46899998766 465521 1 1378999999999999999988764322221 123444443333444777
Q ss_pred EEee
Q 013393 174 IVSK 177 (444)
Q Consensus 174 ~v~~ 177 (444)
.+..
T Consensus 140 ~i~t 143 (177)
T PF03269_consen 140 WIDT 143 (177)
T ss_pred EEee
Confidence 6654
No 328
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=87.51 E-value=0.74 Score=44.38 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=68.8
Q ss_pred eeEEEecccccchhhhhccCCCceEEEecccc-CCCchhHHhhccc----cc--cccccccCCCCCCcccchhhcccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVR-MSARLKIIYDRGL----IG--TVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~-~~~~l~~~~~rg~----~~--~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
=-+++|..+|-|=+|..+.+.-- --.|+=+| +++-|.+--+|-- .+ ..+-==|.+|.-.+|||++-.+.-+-
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 34899999999999999975321 22344444 3466666555543 22 22444567888889999998877665
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
... ++...|=||=|+|+|||.+++=|
T Consensus 131 nv~----d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 131 NVT----DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred cCC----CHHHHHHHHHHhhcCCeEEEEEE
Confidence 322 58999999999999999887743
No 329
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=87.40 E-value=0.76 Score=43.03 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=51.4
Q ss_pred eEEEecccccchhhhhccCC---CceEEEeccccCC-Cchh----HHhhcccc---cccc-ccccCCCCCCcccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRMS-ARLK----IIYDRGLI---GTVH-DWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~---~~wv~~~~~~~~~-~~l~----~~~~rg~~---~~~~-~~~~~~~~y~~~~dl~h~~ 357 (444)
..++|+.+|.|.+++.|... .- .|+-++-. +-+. -+...|+- -+.+ |-.+.++. ..+||.|.++
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g---~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 149 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRG---KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVT 149 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEc
Confidence 46999999999998777531 11 23333322 2221 22334542 2233 44444443 3689999888
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
..+..+ --|+-|.|+|||.+++-
T Consensus 150 ~~~~~~----------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 150 AAASTI----------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred cCcchh----------hHHHHHhcCcCcEEEEE
Confidence 765422 12566899999999884
No 330
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=87.29 E-value=1.5 Score=41.26 Aligned_cols=97 Identities=11% Similarity=0.044 Sum_probs=48.1
Q ss_pred CeEEEECCCcchHHHHHhh--------CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC-------C-CCCCc
Q 013393 46 RNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------Y-PSRSF 109 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~--------~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp-------~-~~~sF 109 (444)
+.|+++|.-.|.-+..+++ +.|+|+|+.........++. .-....+.+..+|..... . ....-
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 3899999988865544432 57899998544332222111 011356778777754321 1 11233
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
.+|+- . .-|...+.-..|+....+++||+|+++.
T Consensus 113 vlVil-D-s~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 113 VLVIL-D-SSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp EEEEE-S-S----SSHHHHHHHHHHT--TT-EEEET
T ss_pred eEEEE-C-CCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 45543 2 2344466778888899999999999984
No 331
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=87.11 E-value=0.47 Score=46.27 Aligned_cols=95 Identities=21% Similarity=0.175 Sum_probs=55.0
Q ss_pred eEEEecccccchhhhhccC--CCceEEEeccccC-CCchhHHhh----cccc--ccc-cccccCCCCCCcccchhhcccc
Q 013393 290 RNVMDMNSNLGGFAAALKD--KDVWVMNVAPVRM-SARLKIIYD----RGLI--GTV-HDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~--~~~wv~~~~~~~~-~~~l~~~~~----rg~~--~~~-~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
..|+|+.++-|..+..+.. .+-. +|+=++. +.-+...-+ .|+- -.. -|. +.++.-+.+||+|+++.+
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~--~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTG--KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNCV 155 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC--EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcCc
Confidence 3899999999864332211 1211 2333332 233333222 2321 011 122 233433579999998887
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+. .. -+...++-|+=|+|||||.+++-|
T Consensus 156 ~~-~~---~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 IN-LS---PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cc-CC---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 76 22 246789999999999999999954
No 332
>PRK06922 hypothetical protein; Provisional
Probab=86.54 E-value=0.46 Score=52.01 Aligned_cols=101 Identities=15% Similarity=0.224 Sum_probs=61.9
Q ss_pred eEEEecccccchhhhhccC-CCceEEEeccccCC-CchhHHhhc----cc-cccccccccCCCC--CCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLKIIYDR----GL-IGTVHDWCESFST--YPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~~-~~l~~~~~r----g~-~~~~~~~~~~~~~--y~~~~dl~h~~~~~ 360 (444)
..|+|..+|.|.++.+|.. .|- .+|+-+|-. +.|...-.+ |. +-+.+.=+..++. =|.+||++.++.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 5799999999999877753 221 345555533 334332222 21 1112222344442 26899999887655
Q ss_pred cccc------c---CCCChhhhhhhhcccccCCcEEEEecc
Q 013393 361 SEIE------E---RGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 361 ~~~~------~---~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
-.+. . ..-.+..+|-|+-|+|+|||.++|.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3211 1 113567889999999999999999874
No 333
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=85.97 E-value=0.93 Score=41.99 Aligned_cols=117 Identities=12% Similarity=0.197 Sum_probs=70.1
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccCC-CchhH----HhhccccccccccccCC--C--CCC-cccchhhccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLIGTVHDWCESF--S--TYP-RTYDLLHAWK 358 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~----~~~rg~~~~~~~~~~~~--~--~y~-~~~dl~h~~~ 358 (444)
.-++|..+|.|.|+.+|... |- .||+=++.. .-+.. +-..|+-.+..=.|... + .+| .++|.++.+
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~- 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN- 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE-
Confidence 57999999999999888753 32 244444432 22222 22344422222122221 1 234 388888765
Q ss_pred ccccc------ccCCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHHHhhcc-cee
Q 013393 359 VFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALK-WDG 410 (444)
Q Consensus 359 ~~~~~------~~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~~~~~~-w~~ 410 (444)
|+.. .++|+....++-++-|+|+|||.+++. |.....+++.+.+...- |+.
T Consensus 95 -~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 -FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred -CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 2211 134667788999999999999999886 66666776666665533 543
No 334
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=85.80 E-value=0.49 Score=46.41 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=27.9
Q ss_pred CccEEEeccccccccccHHHH-HHHHHhhcCCCeEEEEEcCCCC
Q 013393 108 SFELAHCSRCRIDWLQRDGIL-LLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 108 sFDlI~~~~~~l~~~~d~~~~-L~ei~rvLkPGG~lvis~p~~~ 150 (444)
.||+|.++.. +.-......+ .......++++|.+++.....|
T Consensus 196 ~ydlIlsSet-iy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~y 238 (282)
T KOG2920|consen 196 HYDLILSSET-IYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLY 238 (282)
T ss_pred chhhhhhhhh-hhCcchhhhhHhhhhhhcCCccchhhhhhHhhc
Confidence 7899988874 3333444444 5666778889998887554443
No 335
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=85.61 E-value=2.3 Score=39.87 Aligned_cols=97 Identities=22% Similarity=0.298 Sum_probs=57.2
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhc----cc---cccccccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~r----g~---~~~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
.-++|+.++-|.++..+... |. .-+|+-++. ++.+...-++ ++ +-+.+.=.+.++.=+.+||+|.++.++
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGK-TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 46999999999998776431 10 012333332 2222222221 11 222221122223225789999987765
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
. ...+...+|-++-++|+|||.+++-+
T Consensus 132 ~----~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 R----NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred c----cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 4 23568889999999999999998854
No 336
>PRK04266 fibrillarin; Provisional
Probab=85.50 E-value=2.4 Score=40.47 Aligned_cols=96 Identities=14% Similarity=0.238 Sum_probs=50.1
Q ss_pred ccCCceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhH----Hhhc-cccccccccccCC--CCCCcccchh
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKI----IYDR-GLIGTVHDWCESF--STYPRTYDLL 354 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~----~~~r-g~~~~~~~~~~~~--~~y~~~~dl~ 354 (444)
++.+. .|+|..++-|+++..|.+. + --.|+-++. +.-|.. +-+| ++.-+..|-.++. ...+.++|.+
T Consensus 70 i~~g~--~VlD~G~G~G~~~~~la~~v~--~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 70 IKKGS--KVLYLGAASGTTVSHVSDIVE--EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred CCCCC--EEEEEccCCCHHHHHHHHhcC--CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 44443 6999999999999888653 1 002333332 222221 1222 2333333443321 1123456654
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 355 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 355 h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
|+..... =....+|-|+-|+|+|||.++|
T Consensus 146 -----~~d~~~p-~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 146 -----YQDVAQP-NQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred -----EECCCCh-hHHHHHHHHHHHhcCCCcEEEE
Confidence 3311110 0122346799999999999999
No 337
>PRK07402 precorrin-6B methylase; Provisional
Probab=85.49 E-value=2.5 Score=39.07 Aligned_cols=138 Identities=14% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCChhHHHhhHh--hHHHHHHHH-HHHhhhhccCCceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHh-
Q 013393 256 GVTTEEFHEDIG--IWQVRVVDY-WKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY- 329 (444)
Q Consensus 256 g~~~~~f~~~~~--~w~~~v~~y-~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~- 329 (444)
|+..+.|.+..+ ..+.++... .+.+. +. .-..|+|..+|.|.++..+... |- -.|+=++- +..+...-
T Consensus 9 ~~~d~~~~~~~~~p~t~~~v~~~l~~~l~--~~--~~~~VLDiG~G~G~~~~~la~~~~~--~~V~~vD~s~~~~~~a~~ 82 (196)
T PRK07402 9 GIPDELFERLPGIPLTKREVRLLLISQLR--LE--PDSVLWDIGAGTGTIPVEAGLLCPK--GRVIAIERDEEVVNLIRR 82 (196)
T ss_pred CCChHHhccCCCCCCCHHHHHHHHHHhcC--CC--CCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHH
Confidence 444455655333 677888754 44343 33 3347999999999998766421 21 12333332 22332221
Q ss_pred ---hccc--ccccc-ccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEec-cHHHHHHHHHH
Q 013393 330 ---DRGL--IGTVH-DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKF 402 (444)
Q Consensus 330 ---~rg~--~~~~~-~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd-~~~~~~~~~~~ 402 (444)
+.|+ +=+.+ |-.+.++..+-.+|.++.++ ..++..++-++-|+|+|||.+++-. +.+.+.++.+.
T Consensus 83 n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~--------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~ 154 (196)
T PRK07402 83 NCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG--------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEG 154 (196)
T ss_pred HHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHH
Confidence 1233 11111 11111111111234443321 2357899999999999999998864 33345556666
Q ss_pred Hhhcc
Q 013393 403 ITALK 407 (444)
Q Consensus 403 ~~~~~ 407 (444)
++.++
T Consensus 155 ~~~~~ 159 (196)
T PRK07402 155 LAQLQ 159 (196)
T ss_pred HHhcC
Confidence 65553
No 338
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=85.09 E-value=0.9 Score=45.20 Aligned_cols=103 Identities=14% Similarity=0.271 Sum_probs=63.8
Q ss_pred ccCCceeEEEecccccchhhhhccCC-CceEEEeccccCCCchhH----HhhccccccccccccCC--CCCCcccchhhc
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKI----IYDRGLIGTVHDWCESF--STYPRTYDLLHA 356 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~~----~~~rg~~~~~~~~~~~~--~~y~~~~dl~h~ 356 (444)
++-...+.++|+..+.|.++.++... |-. +|+-.+.|..+.. +-+.|+-+-.+-.+-.| ..+| .+|++-.
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~ 221 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLF 221 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEe
Confidence 34456679999999999999888643 432 3444454444443 34456643332232222 1345 3788766
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 357 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 357 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
++++-.... -....++-++-|.|+|||.++|-|
T Consensus 222 ~~~lh~~~~--~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 222 CRILYSANE--QLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EhhhhcCCh--HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 665542211 123568889999999999998865
No 339
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=84.95 E-value=4.9 Score=44.53 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=40.6
Q ss_pred CCccEEEeccccccccccH----HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 107 RSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 107 ~sFDlI~~~~~~l~~~~d~----~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
..||+++.-.. -+ ..++ ..+|+++.|+++|||.|.=-+ .-..++.-+..+||++....
T Consensus 165 ~~~d~~~lD~F-sP-~~np~~W~~~~~~~l~~~~~~~~~~~t~t------------~a~~vr~~l~~~GF~v~~~~ 226 (662)
T PRK01747 165 ARADAWFLDGF-AP-AKNPDMWSPNLFNALARLARPGATLATFT------------SAGFVRRGLQEAGFTVRKVK 226 (662)
T ss_pred ccccEEEeCCC-CC-ccChhhccHHHHHHHHHHhCCCCEEEEee------------hHHHHHHHHHHcCCeeeecC
Confidence 56999996541 11 1233 389999999999999998421 12467788899999876543
No 340
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=84.60 E-value=13 Score=36.43 Aligned_cols=123 Identities=14% Similarity=0.181 Sum_probs=65.2
Q ss_pred eEEEECCCcchHHHHHhhCC---ceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC--CCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP--SRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~---V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~--~~sFDlI~~~~~~l~~ 121 (444)
+++|+-||.|.+..-+.+.+ +.++|+. +..++..+.+.... +...|...+... ...+|+++.+.---.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~-----~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEID-----KSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCC-----HHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 59999999999977776653 3445444 44444444443222 345565554421 3569999985310111
Q ss_pred --------cccH-HHHHHH---HHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 122 --------LQRD-GILLLE---LDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 --------~~d~-~~~L~e---i~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
..|. ..++.+ +.+.++|- ++++---.... .......+..+.+.+++.||.+...
T Consensus 76 S~ag~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~-~~~~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 76 SIAGKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLL-THDNGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred hHHhhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchh-ccCchHHHHHHHHHHHhCCcEEEEE
Confidence 1122 223433 44445666 33332211111 1112346778888889999876443
No 341
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=84.50 E-value=0.63 Score=47.36 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=59.1
Q ss_pred EEEecccccchhhhhccCC-CceEEEeccccCC-CchhH----HhhccccccccccccCCCCCCcccchhhcccccccc-
Q 013393 291 NVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI- 363 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~----~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~- 363 (444)
.|+|+.+|.|.+++++... |.- .|+-++.. .-|.. +-..|+-+..+ ++..++.-+.+||+|-++--|-..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 5999999999999988754 311 23333321 11111 11233323222 333444457899999998777421
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
....-..+.++-++-|.|+|||.++|=
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 111123678899999999999999773
No 342
>PRK14967 putative methyltransferase; Provisional
Probab=84.23 E-value=1.5 Score=41.45 Aligned_cols=118 Identities=16% Similarity=0.222 Sum_probs=67.2
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHh----hccc--cccccccccCCCCCCcccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~----~rg~--~~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
..++|+.++.|.++..+...+. -+|+=++- +..+...- ..|+ .-+-.|+.+.++ +.+||+|.++--|..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 4799999999999887765432 14444443 23343221 1233 112235555443 368999998743331
Q ss_pred cc-----------------cCCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHHHhhccceeE
Q 013393 363 IE-----------------ERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDGW 411 (444)
Q Consensus 363 ~~-----------------~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~~~~~~w~~~ 411 (444)
.. ...+.+..++-++-|+|+|||.+++= .+.....++...+++-.|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 180 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAE 180 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeE
Confidence 10 00112566777899999999999872 222234455555555555543
No 343
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=84.19 E-value=4.1 Score=41.72 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=56.2
Q ss_pred CeEEEECCCc-chHHHHHhhCCceEE-EcCcccchHHHHHHHHHcCCCcEEEEecCcc-C-----CC-CCCCccEEEecc
Q 013393 46 RNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-----PY-PSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGt-G~~a~~La~~~V~gv-dis~~dis~a~i~~a~e~~~~~~~~~~d~~~-l-----p~-~~~sFDlI~~~~ 116 (444)
.+||.+|||. |..+..+++.. +. .+...+.++.+.+.+++.+. ..+......+ + .+ ..+.+|+|+...
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~--g~~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLL--GAERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 3899999987 77777777641 11 12233444566677776632 2221111110 1 11 234699998642
Q ss_pred cc--------------ccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 117 CR--------------IDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 117 ~~--------------l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.. ++-..+....+.++.+.|+|+|.+++..
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 10 0011334568899999999999999864
No 344
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=83.93 E-value=0.7 Score=44.85 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=66.2
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCCCchhHHhhccccccccccccCCCCCCcccchhhccccccccccCCCC
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCS 369 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~ 369 (444)
--|.||..|=+-.|.. ...+|--|.+|+++..=+.-=|. ..|-=.+|-|+ |--|+|.+. -+
T Consensus 182 ~vIaD~GCGEakiA~~-~~~kV~SfDL~a~~~~V~~cDm~-------------~vPl~d~svDv--aV~CLSLMg---tn 242 (325)
T KOG3045|consen 182 IVIADFGCGEAKIASS-ERHKVHSFDLVAVNERVIACDMR-------------NVPLEDESVDV--AVFCLSLMG---TN 242 (325)
T ss_pred eEEEecccchhhhhhc-cccceeeeeeecCCCceeecccc-------------CCcCccCcccE--EEeeHhhhc---cc
Confidence 3577887776655542 23467778888776542211111 12333578887 456788443 36
Q ss_pred hhhhhhhhcccccCCcEEEEeccHHHHHHHH---HHHhhccceeEEe
Q 013393 370 FEDLLIEMDRMLRPEGFVIIRDKSSIINYIR---KFITALKWDGWLS 413 (444)
Q Consensus 370 ~~~~~~e~drilrp~g~~~~rd~~~~~~~~~---~~~~~~~w~~~~~ 413 (444)
+.+-+.|.-|||+|||.++|-+-..-...++ .-++.|..+....
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence 9999999999999999999965443333333 3456788887543
No 345
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=83.74 E-value=1.6 Score=36.29 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=54.1
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccCC-CchhH----Hhhccccc--cc-cc--cccCCCCCCcccchhhccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLIG--TV-HD--WCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~----~~~rg~~~--~~-~~--~~~~~~~y~~~~dl~h~~~ 358 (444)
..++|+.++.|.++..+... |- .+|+-++-. ..+.. +...|+-. +. .| |+. ..-+.+||.+=..+
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEAL--EDSLPEPDRVFIGG 96 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccC--hhhcCCCCEEEECC
Confidence 48999999999999888653 32 345555532 33332 12223211 11 11 222 22345788875443
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
..+ .+..++-++-|.|+|||++++-
T Consensus 97 ~~~-------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 97 SGG-------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cch-------hHHHHHHHHHHHcCCCCEEEEE
Confidence 222 3568899999999999999873
No 346
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=83.20 E-value=1.3 Score=41.62 Aligned_cols=92 Identities=14% Similarity=0.067 Sum_probs=48.2
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHH----hhccccccccccccCCCCCC--cccchhhcccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII----YDRGLIGTVHDWCESFSTYP--RTYDLLHAWKVFS 361 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~----~~rg~~~~~~~~~~~~~~y~--~~~dl~h~~~~~~ 361 (444)
=..|+|+.++.|.+++.|...--=.-.|+-++- ++-+... -.-|+=.+---.+..+..+| ..||+|++...+.
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~ 156 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGP 156 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCcc
Confidence 358999999999999877532000002222222 1222211 11232111112222333332 6799998876443
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
.+.-++-+.|+|||.+++-
T Consensus 157 ----------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 157 ----------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred ----------cchHHHHHhhCCCcEEEEE
Confidence 2233455689999999883
No 347
>PRK11524 putative methyltransferase; Provisional
Probab=83.03 E-value=1.3 Score=43.67 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=46.2
Q ss_pred EEEEecCccC--CCCCCCccEEEecccc-c--c------------ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChh
Q 013393 93 TLGVLGTKRL--PYPSRSFELAHCSRCR-I--D------------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE 155 (444)
Q Consensus 93 ~~~~~d~~~l--p~~~~sFDlI~~~~~~-l--~------------~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~ 155 (444)
.+..+|.... .+++++||+|+++--. . . |..-....+.++.|+|||||.+++......
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~----- 84 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTEN----- 84 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchh-----
Confidence 4445554442 3567889999985210 0 0 001124689999999999999998533210
Q ss_pred hHHHHHHHHHHHHhcCeEEEeeecceeEeecc
Q 013393 156 NRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 187 (444)
Q Consensus 156 ~~~~~~~l~~l~~~~gf~~v~~~~~~~~w~k~ 187 (444)
... ..++.+.+|... ...+|.|+
T Consensus 85 ----~~~-~~~~~~~~f~~~----~~iiW~k~ 107 (284)
T PRK11524 85 ----MPF-IDLYCRKLFTIK----SRIVWSYD 107 (284)
T ss_pred ----hhH-HHHHHhcCcceE----EEEEEEeC
Confidence 111 233345567533 34589885
No 348
>PRK04457 spermidine synthase; Provisional
Probab=82.86 E-value=5.4 Score=38.92 Aligned_cols=100 Identities=10% Similarity=0.128 Sum_probs=57.9
Q ss_pred CceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhc-ccc------ccc-cccccCCCCCCcccchhhc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR-GLI------GTV-HDWCESFSTYPRTYDLLHA 356 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~r-g~~------~~~-~~~~~~~~~y~~~~dl~h~ 356 (444)
..-++++++..+-|.++..+... |. ..|+-++- +..+.+.-+. ++- -+. -|--+-+.+.|.+||+|=.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 45678999999999999877532 31 23333332 3444433322 111 111 1211223445778999965
Q ss_pred cccccccc-cCCCChhhhhhhhcccccCCcEEEE
Q 013393 357 WKVFSEIE-ERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 357 ~~~~~~~~-~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
+ .|+... .........+-++=++|+|||.+++
T Consensus 143 D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 143 D-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred e-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 5 343111 1112346888999999999999988
No 349
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=82.64 E-value=0.93 Score=41.28 Aligned_cols=142 Identities=19% Similarity=0.273 Sum_probs=67.6
Q ss_pred ccCCceeEEEecccccchhhhhccCCCceEEEeccccC-----CCchhHHhhcccc---ccccccccCCCCCCcccchhh
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-----SARLKIIYDRGLI---GTVHDWCESFSTYPRTYDLLH 355 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-----~~~l~~~~~rg~~---~~~~~~~~~~~~y~~~~dl~h 355 (444)
++.+.-.+++|..+.=|||...+.........|+-+|- ......| +|=| .+...-.+.++.=.+.+||+-
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 33446799999999999999999876522223333332 1111121 2211 111122222222226899999
Q ss_pred cccccccccc----CCCChhhhhhh---hcccccCCcEEEEe-----ccHHHHHHHHHHHhhccceeEEeccccccCCCC
Q 013393 356 AWKVFSEIEE----RGCSFEDLLIE---MDRMLRPEGFVIIR-----DKSSIINYIRKFITALKWDGWLSEVEPRIDALS 423 (444)
Q Consensus 356 ~~~~~~~~~~----~~c~~~~~~~e---~drilrp~g~~~~r-----d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 423 (444)
+|.-+..... .--.+.-++-. +-..|+|||.+|+. +..+++..++..-+..+ .+.+.... +
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~------~~Kp~~sr-~ 169 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVK------IVKPPSSR-S 169 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEE------EEE-TTSB-T
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEE------EEECcCCC-C
Confidence 9995541100 00011111222 23559999988772 33466666666444432 23333221 2
Q ss_pred CCCceEEEEEe
Q 013393 424 SSEERVLIAKK 434 (444)
Q Consensus 424 ~~~~~~l~~~k 434 (444)
.+.|..|||.+
T Consensus 170 ~s~E~Ylv~~~ 180 (181)
T PF01728_consen 170 ESSEEYLVCRG 180 (181)
T ss_dssp TCBEEEEESEE
T ss_pred CccEEEEEEcC
Confidence 35788998874
No 350
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=81.94 E-value=4 Score=40.83 Aligned_cols=115 Identities=19% Similarity=0.323 Sum_probs=68.9
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHH----hhccc---cccc-cccccCCCCCCcccchhhcccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKII----YDRGL---IGTV-HDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~----~~rg~---~~~~-~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
..++|+.+|.|.++.+|... |. .+|+-++- +..+.+. -..|+ |-++ .|+.+.++ +.+||+|-++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 47999999999999988643 43 34666664 3444432 23354 2222 25545443 368999987632
Q ss_pred ccc------c------cc--------CCC-ChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhh--ccce
Q 013393 360 FSE------I------EE--------RGC-SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITA--LKWD 409 (444)
Q Consensus 360 ~~~------~------~~--------~~c-~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~--~~w~ 409 (444)
+.. + .. +.. -...++-+.-+.|+|||.+++.-... ..+++++... +.|-
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTWL 282 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEEE
Confidence 210 0 00 000 12567888999999999999854433 4457777664 3453
No 351
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=81.86 E-value=1.3 Score=41.72 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=50.4
Q ss_pred eEEEecccccchhhhhccCC--C-ceEEEeccccC-CCchhH----Hhhccc--c-ccccccccCCCCCCcccchhhccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK--D-VWVMNVAPVRM-SARLKI----IYDRGL--I-GTVHDWCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~-~wv~~~~~~~~-~~~l~~----~~~rg~--~-~~~~~~~~~~~~y~~~~dl~h~~~ 358 (444)
..|+|+.++.|.+++.|.+. + . .|+-++- +.-+.. +-+.|+ + =+..|..+.++. ...||+|++++
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g---~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~ 154 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDG---LVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVTA 154 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEcC
Confidence 47999999999999988653 1 1 1333332 222221 223343 1 122344444333 25899998776
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
... .+.-++=+.|+|||.+++
T Consensus 155 ~~~----------~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 155 AGP----------KIPEALIDQLKEGGILVM 175 (215)
T ss_pred Ccc----------cccHHHHHhcCcCcEEEE
Confidence 443 222345678999999987
No 352
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=81.80 E-value=2.3 Score=40.99 Aligned_cols=115 Identities=19% Similarity=0.112 Sum_probs=79.0
Q ss_pred cCCceeEEEecccccchhhhhcc-CCCceEEEeccccCC-CchhHHhhccccccccccc--------cCCCCCCcccchh
Q 013393 285 QKNTFRNVMDMNSNLGGFAAALK-DKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWC--------ESFSTYPRTYDLL 354 (444)
Q Consensus 285 ~~~~~rnvmDm~a~~G~f~a~~~-~~~~wv~~~~~~~~~-~~l~~~~~rg~~~~~~~~~--------~~~~~y~~~~dl~ 354 (444)
.+..-|-.+|..+|=| +||..+ +. --||+-+|-. ..|.++ ..+.=-+||+-- +.|..=+.+-|||
T Consensus 30 ~~~~h~~a~DvG~G~G-qa~~~iae~---~k~VIatD~s~~mL~~a-~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI 104 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNG-QAARGIAEH---YKEVIATDVSEAMLKVA-KKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLI 104 (261)
T ss_pred hCCCcceEEEeccCCC-cchHHHHHh---hhhheeecCCHHHHHHh-hcCCCcccccCCccccccccccccCCCcceeee
Confidence 3445569999999999 777664 22 2377777754 566632 333333444433 4444558999999
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCc-EE---EEeccHHHHHHHHHHHhhccce
Q 013393 355 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEG-FV---IIRDKSSIINYIRKFITALKWD 409 (444)
Q Consensus 355 h~~~~~~~~~~~~c~~~~~~~e~drilrp~g-~~---~~rd~~~~~~~~~~~~~~~~w~ 409 (444)
-|.-+|- -|+++..+-++-|+|||.| .+ -.+|+..+--++-++..++.|+
T Consensus 105 ~~Aqa~H-----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 105 TAAQAVH-----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhhhhHH-----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 8887775 5899999999999999999 22 2366666667777777777775
No 353
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=80.93 E-value=1.4 Score=37.13 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=20.6
Q ss_pred CCeEEEECCCcchHHHHHhhCCceEEEc
Q 013393 45 IRNVLDVGCGVASFGAYLLSHDIIAMSL 72 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~~V~gvdi 72 (444)
.....|+|||.|.+.--|.+.+..|..+
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~Gi 86 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGI 86 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccc
Confidence 3469999999999887777765544433
No 354
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=80.90 E-value=16 Score=39.19 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=64.3
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh----C----CceEEEcCcccchHHHHHHHHHcCCC--cE
Q 013393 24 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----H----DIIAMSLAPNDVHENQIQFALERGIP--ST 93 (444)
Q Consensus 24 y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~----~----~V~gvdis~~dis~a~i~~a~e~~~~--~~ 93 (444)
-.+.+.+++.. ....+|.|-.||+|++.....+ . .+.|.++.+....-+..+... ++.+ +.
T Consensus 174 v~~liv~~l~~--------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l-hgi~~~~~ 244 (489)
T COG0286 174 VSELIVELLDP--------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL-HGIEGDAN 244 (489)
T ss_pred HHHHHHHHcCC--------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH-hCCCcccc
Confidence 35556666642 2223899999999976554432 1 244555544333333322222 2333 34
Q ss_pred EEEecCccCCC-----CCCCccEEEecccc--ccccc----------------------cHHHHHHHHHhhcCCCeEEEE
Q 013393 94 LGVLGTKRLPY-----PSRSFELAHCSRCR--IDWLQ----------------------RDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 94 ~~~~d~~~lp~-----~~~sFDlI~~~~~~--l~~~~----------------------d~~~~L~ei~rvLkPGG~lvi 144 (444)
....|...-|. ..+.||+|+++.-. -.|.. ....+++.+...|+|||+..+
T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 44444333332 33679999986310 11110 113689999999999998877
Q ss_pred EcCCC
Q 013393 145 SSPEA 149 (444)
Q Consensus 145 s~p~~ 149 (444)
..|..
T Consensus 325 vl~~g 329 (489)
T COG0286 325 VLPDG 329 (489)
T ss_pred EecCC
Confidence 66653
No 355
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=80.40 E-value=5.7 Score=39.18 Aligned_cols=91 Identities=18% Similarity=0.240 Sum_probs=52.1
Q ss_pred eEEEECCC-cchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc---C-CCCCCCccEEEeccccccc
Q 013393 47 NVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---L-PYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCG-tG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~---l-p~~~~sFDlI~~~~~~l~~ 121 (444)
+||..|+| .|..+..+++.. +..+...+.++.+.+.+++.+....+...+... + ....+.+|+|+....
T Consensus 168 ~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g---- 241 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG---- 241 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC----
Confidence 78888876 467777777641 112223334455556666655432221111000 0 123457998875321
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
....+.++.+.|+++|.++...
T Consensus 242 ---~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 242 ---TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ---CHHHHHHHHHHhhcCCEEEEEC
Confidence 1357888999999999999754
No 356
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=79.63 E-value=0.89 Score=42.89 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=63.2
Q ss_pred HHHHHHHhhhhccCCceeEEEecccccchhhhhccCC-CceEEEeccccCCCchhHHhhccccccccccccCCCCCCccc
Q 013393 273 VVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTY 351 (444)
Q Consensus 273 v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~ 351 (444)
|+.+.+.++ +.+.-.-|-||..|=+-.|+++.+. .|.--..|+.+.. -+..|=. ..|-=.-+.
T Consensus 60 vd~iI~~l~---~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~---Vtacdia----------~vPL~~~sv 123 (219)
T PF05148_consen 60 VDVIIEWLK---KRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR---VTACDIA----------NVPLEDESV 123 (219)
T ss_dssp HHHHHHHHC---TS-TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTT---EEES-TT----------S-S--TT-E
T ss_pred HHHHHHHHH---hcCCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCC---EEEecCc----------cCcCCCCce
Confidence 444554444 3345568999999999999988643 4554455544321 1111111 111122567
Q ss_pred chhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccHH---HHHHHHHHHhhccceeEEe
Q 013393 352 DLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS---IINYIRKFITALKWDGWLS 413 (444)
Q Consensus 352 dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~---~~~~~~~~~~~~~w~~~~~ 413 (444)
|.+ --++|.+.. +..+.+.|--|||||||.++|-+-.. -++.--+.++++..+....
T Consensus 124 Dv~--VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 124 DVA--VFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp EEE--EEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEE
T ss_pred eEE--EEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEec
Confidence 763 556674443 59999999999999999999954333 2333445566777887544
No 357
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=78.91 E-value=11 Score=39.36 Aligned_cols=137 Identities=15% Similarity=0.198 Sum_probs=80.2
Q ss_pred EEEecccccchhhhhccC-CCceEEEeccccC-CCchhHHh----hccc-cc-cccccccCCCCCCcccchhhccccccc
Q 013393 291 NVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIY----DRGL-IG-TVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~-~~~l~~~~----~rg~-~~-~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
.++|+.+|-|-++.+|.. .|- .+|+-+|. +..|.+.- ..|+ +- +-.|+.+....-..+||+|-++-=+..
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 799999999999987753 232 24444443 34444322 2232 21 223555431111246999888654421
Q ss_pred cc--------------------cCCC-ChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhccceeEEeccccccCC
Q 013393 363 IE--------------------ERGC-SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDA 421 (444)
Q Consensus 363 ~~--------------------~~~c-~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 421 (444)
.. .+.. -+..|+-+.-+.|+|||++++.=..+--+++++++....|+.... . .
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v-~--k--- 405 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVET-L--P--- 405 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEE-E--E---
Confidence 00 0000 033566667788999999998666666788999998887764211 1 1
Q ss_pred CCCCCceEEEEEec
Q 013393 422 LSSSEERVLIAKKK 435 (444)
Q Consensus 422 ~~~~~~~~l~~~k~ 435 (444)
.-.+.++++++++.
T Consensus 406 Dl~G~dR~v~~~~~ 419 (423)
T PRK14966 406 DLAGLDRVTLGKYM 419 (423)
T ss_pred cCCCCcEEEEEEEh
Confidence 12357999998753
No 358
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=78.69 E-value=2.9 Score=36.78 Aligned_cols=96 Identities=19% Similarity=0.342 Sum_probs=60.6
Q ss_pred eEEEecccccchhhhhccC--C-CceEEEeccccC-CCchhHHh----hcccc--ccc-cccccCCCC-CCcccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKD--K-DVWVMNVAPVRM-SARLKIIY----DRGLI--GTV-HDWCESFST-YPRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~--~-~~wv~~~~~~~~-~~~l~~~~----~rg~~--~~~-~~~~~~~~~-y~~~~dl~h~~ 357 (444)
-+|+|+.+|.|-+.=.|.+ . +. +++=+|- +.-+...- +.|+- =.+ .|.=+ ++. |+..||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 3799999999999888772 1 12 2333332 23333222 23442 122 22222 222 45889999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEeccH
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 393 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~ 393 (444)
+++.. -.+...++-+|=|.|+|+|.+++.+..
T Consensus 81 ~~l~~----~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHH----FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGG----TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhh----ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 98852 245778899999999999999998877
No 359
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=78.18 E-value=2.2 Score=41.37 Aligned_cols=121 Identities=16% Similarity=0.172 Sum_probs=71.7
Q ss_pred eEEEecccccchhhhhccC-CCceEEEeccccC-CCchhHHh----hccccccccccccCCCC-CCcccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIY----DRGLIGTVHDWCESFST-YPRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~-~~~l~~~~----~rg~~~~~~~~~~~~~~-y~~~~dl~h~~~~~~~ 362 (444)
..++|+.+|.|.++-++.. .|- .+|+=++. +..+...- ..|+--+-.|+.+.++. .+..||+|=++=-+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 3699999999999887753 222 13444443 23333211 11321122355444431 2346898876643321
Q ss_pred c------------ccCCCC----------hhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhccceeEE
Q 013393 363 I------------EERGCS----------FEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWL 412 (444)
Q Consensus 363 ~------------~~~~c~----------~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~~~ 412 (444)
. +..++. +..++-...++|+|||.+++-=..+-..++..++....|+..+
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARV 237 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCcee
Confidence 0 000111 3477778889999999999876666678888888888888754
No 360
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.09 E-value=3.7 Score=36.66 Aligned_cols=84 Identities=10% Similarity=0.054 Sum_probs=47.7
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCc
Q 013393 25 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTK 100 (444)
Q Consensus 25 ~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~ 100 (444)
.+++++.+.+.. +.+..+.+|+|.|.|......++. ..+|+++.|.-+..+....-++. +...+|.--|..
T Consensus 58 teQv~nVLSll~-----~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdlw 132 (199)
T KOG4058|consen 58 TEQVENVLSLLR-----GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLW 132 (199)
T ss_pred HHHHHHHHHHcc-----CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhh
Confidence 345566665432 233347999999999887776663 45688888765544443222221 334556555665
Q ss_pred cCCCCCCCccEEE
Q 013393 101 RLPYPSRSFELAH 113 (444)
Q Consensus 101 ~lp~~~~sFDlI~ 113 (444)
+....+-.+=+|+
T Consensus 133 K~dl~dy~~vviF 145 (199)
T KOG4058|consen 133 KVDLRDYRNVVIF 145 (199)
T ss_pred hccccccceEEEe
Confidence 5554433333333
No 361
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=77.91 E-value=4.5 Score=40.12 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=44.6
Q ss_pred CCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC-CCCCChhhHH-HHHHHHHHHHhcCeEEE
Q 013393 106 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE-AYAHDPENRR-IWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~-~~~~~~~~~~-~~~~l~~l~~~~gf~~v 175 (444)
.+.||+|+.+....|++.+ ++.++++|||.+++-+.. ......+... .-..+.++++.+||+..
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p------~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP------ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred cCCCCEEEEhhhhHhhcch------HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 3679999988765665432 377789999999997643 2223333333 44588999999999754
No 362
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=77.30 E-value=2.4 Score=43.71 Aligned_cols=136 Identities=13% Similarity=0.144 Sum_probs=72.0
Q ss_pred eeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCC-CCCCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHH
Q 013393 7 KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNG-GNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHEN 80 (444)
Q Consensus 7 ~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g-~~~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a 80 (444)
...+|..+..|.+-....-+.+.-.+-.....+... ...-+|||.=+|+|.=+...+. ..|+.-|+++..+..
T Consensus 11 ~~~~~~~~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~- 89 (377)
T PF02005_consen 11 NITIPKKAPVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVEL- 89 (377)
T ss_dssp -SSTTTTSSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHH-
T ss_pred eeecCCCCCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHH-
Confidence 355777788888888777776653331000000000 1123799999999965554443 245555665543322
Q ss_pred HHHHHHHcCCCc---EEEEecCccCC-CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 81 QIQFALERGIPS---TLGVLGTKRLP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 81 ~i~~a~e~~~~~---~~~~~d~~~lp-~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
..+.+..++... .+...|+..+- ...+.||+|-.- +| -.+..+|..+.+.+|.||++.++...
T Consensus 90 i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD----Pf-GSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 90 IKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD----PF-GSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp HHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE------S-S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred HHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC----CC-CCccHhHHHHHHHhhcCCEEEEeccc
Confidence 222333344443 55566655432 245789999742 23 45568999999999999999997644
No 363
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.78 E-value=9.8 Score=40.89 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=57.8
Q ss_pred CCeEEEECCCc-chHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-----------CC---------
Q 013393 45 IRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-----------LP--------- 103 (444)
Q Consensus 45 ~~rVLDVGCGt-G~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-----------lp--------- 103 (444)
+.+|+=+|||. |..+...++. .|.++...|.++...+.+++.|.. +...+..+ +.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~~~~rle~aeslGA~--~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDTRPEVAEQVESMGAE--FLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCCe--EEEeccccccccccchhhhcchhHHHHHHH
Confidence 45899999997 4555555553 122344446666777777776654 22111110 10
Q ss_pred -CCC--CCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 104 -YPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 104 -~~~--~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
+.+ +.+|+|+..-. .+..+.+..+.+++.+.+||||.++....
T Consensus 241 ~~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 46999997652 33222333345999999999999987543
No 364
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=76.56 E-value=4.5 Score=37.76 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=49.7
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhh----cccc--ccccccccCCCCCC--cccchhhccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLI--GTVHDWCESFSTYP--RTYDLLHAWK 358 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~----rg~~--~~~~~~~~~~~~y~--~~~dl~h~~~ 358 (444)
.-..|+|+.++.|.+++.|.... -.|+-++.. +-+...-+ -|+- -+.+. ..+.++| .+||+|..+.
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG--DGWKGWPAYAPFDRILVTA 152 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC--CcccCCCcCCCcCEEEEcc
Confidence 34589999999999988765431 134444432 22222211 1331 11111 1233333 6899998876
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
.+.. +.-++-+.|+|||.+++-
T Consensus 153 ~~~~----------~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 153 AAPE----------IPRALLEQLKEGGILVAP 174 (212)
T ss_pred Cchh----------hhHHHHHhcCCCcEEEEE
Confidence 4442 233455789999999873
No 365
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=76.32 E-value=6.9 Score=38.85 Aligned_cols=105 Identities=16% Similarity=0.064 Sum_probs=61.8
Q ss_pred CCCCeEEEECCCcchHHHHHhhCC-ceEEEcCcccchHHHHHHHHHc---------CCCcEEEEecCccC-C-CCCCCcc
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSHD-IIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-P-YPSRSFE 110 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~~-V~gvdis~~dis~a~i~~a~e~---------~~~~~~~~~d~~~l-p-~~~~sFD 110 (444)
.+++++|=||-|-|.+.+..+++. |--+.+-.+| +..++..++- +..+.+..+|.-.+ . .+.++||
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD--~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEID--ENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhh--HHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 345689999999999988877752 2222232222 2222222221 44566666663221 1 3468999
Q ss_pred EEEeccc--ccccc-ccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 111 LAHCSRC--RIDWL-QRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 111 lI~~~~~--~l~~~-~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
+|+.-.. ..+-. .-...++.-+.+.||+||+++.+.-+.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 9986321 11110 112368888999999999999976543
No 366
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=75.33 E-value=16 Score=35.52 Aligned_cols=102 Identities=17% Similarity=0.242 Sum_probs=57.0
Q ss_pred CCeEEEECCCcchHHHHHhhC--------CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCcc-CC-CCCCCccEEE
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKR-LP-YPSRSFELAH 113 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--------~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~-lp-~~~~sFDlI~ 113 (444)
.-+.+|+|.|+-.=++.|+++ ..+.+|++..-++....+..++. +..+.-...|.+. +. .|..+=-+++
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~ 158 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV 158 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence 348999999999777666552 34566666644444444444443 3333333333221 11 1222222332
Q ss_pred eccc-cccccccH-HHHHHHHHhhcCCCeEEEEEc
Q 013393 114 CSRC-RIDWLQRD-GILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 114 ~~~~-~l~~~~d~-~~~L~ei~rvLkPGG~lvis~ 146 (444)
...+ +..+.++. ..+|.++...|+||-+|++..
T Consensus 159 flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 159 FLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 2222 23333333 478999999999999999864
No 367
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=74.87 E-value=3.6 Score=37.93 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=52.1
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccccccccccccCCCCC-CcccchhhccccccccccCCC
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTY-PRTYDLLHAWKVFSEIEERGC 368 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~~~~~~~~~~~~~~y-~~~~dl~h~~~~~~~~~~~~c 368 (444)
.++|+.++.|.++.+|.+..-. +++-++. +..+.....+|+--+..|..+.++.+ +++||+|-+.+.|..+.
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~---- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR---- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc----
Confidence 7999999999999988653211 2222232 23344444556422223333333323 47999999999887442
Q ss_pred ChhhhhhhhcccccC
Q 013393 369 SFEDLLIEMDRMLRP 383 (444)
Q Consensus 369 ~~~~~~~e~drilrp 383 (444)
+...+|-||-|++++
T Consensus 90 d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 NPEEILDEMLRVGRH 104 (194)
T ss_pred CHHHHHHHHHHhCCe
Confidence 366777777666554
No 368
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=73.91 E-value=6.2 Score=38.97 Aligned_cols=115 Identities=17% Similarity=0.312 Sum_probs=68.7
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHh----hccc---cccc-cccccCCCCCCcccchhhcccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY----DRGL---IGTV-HDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~----~rg~---~~~~-~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
..++|+.+|.|.++.+|... |-+ +|+-++- +..+.+.- ..|+ |-++ -|+-+.++ +.+||+|=++-=
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~--~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPP 198 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA--EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNPP 198 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECCC
Confidence 47999999999999998753 322 4555554 34444322 2354 2222 34434443 357999887622
Q ss_pred ccc------ccc--------------CCC-ChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhccce
Q 013393 360 FSE------IEE--------------RGC-SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWD 409 (444)
Q Consensus 360 ~~~------~~~--------------~~c-~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~ 409 (444)
+.. +.. +.. ....++-+.-+.|+|||.+++.-.... +++++++....|.
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~ 268 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFT 268 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCc
Confidence 210 000 001 125678888999999999998655443 6888888755443
No 369
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=73.68 E-value=1.8 Score=41.73 Aligned_cols=50 Identities=20% Similarity=0.334 Sum_probs=40.1
Q ss_pred cccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH
Q 013393 340 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 393 (444)
Q Consensus 340 ~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~ 393 (444)
|-+++. +-+.|++-+-.+||.+. .-.|..++=.+-|+|+|||.+++||=.
T Consensus 136 ~~~~~~--~~svD~it~IFvLSAi~--pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 136 LKEPPE--EGSVDIITLIFVLSAIH--PEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred ccCCCC--cCccceEEEEEEEeccC--hHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 444444 48899999999999553 346888999999999999999999743
No 370
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.30 E-value=12 Score=37.57 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=52.0
Q ss_pred CeEEEECCC-cchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEe--cCccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCG-VASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVL--GTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCG-tG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~--d~~~lp~~~~sFDlI~~~~~~ 118 (444)
++||=.||| .|.++..+++. .|+++ +.++...+.+++.|....+... +..++....+.||+|+-..
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~-----~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~-- 243 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCA-----DVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS-- 243 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEE-----eCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC--
Confidence 478888875 34555556553 23344 4445666777777654322111 1111111123589887543
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
- ....+..+.+.|++||.+++...
T Consensus 244 G-----~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 G-----HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred C-----CHHHHHHHHHHhhcCCEEEEEcc
Confidence 1 12467888899999999998653
No 371
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=73.15 E-value=16 Score=36.03 Aligned_cols=165 Identities=15% Similarity=0.150 Sum_probs=92.3
Q ss_pred CeEEEECCCcchHHHH--Hhh--CCceEEEcCcccchHHHHHHHHHcCCC-cEEEEecCccCCCC---CCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAY--LLS--HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYP---SRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~--La~--~~V~gvdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp~~---~~sFDlI~~~~~ 117 (444)
+.|+=+| -.-.++.+ |.. ..|..+|+...-+ .--.++|.+.+.+ +...+.|... |+| .+.||+.+.-.
T Consensus 154 K~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli-~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiTDP- 229 (354)
T COG1568 154 KEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLI-KFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFITDP- 229 (354)
T ss_pred CeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHH-HHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeecCc-
Confidence 4588887 33333333 322 3566666654322 1122355666765 6667777543 444 47899987543
Q ss_pred cccccccHHHHHHHHHhhcCCC---eEEEEEcCCCCCCChhhHHHHHHHHH-HHHhcCeEEEeeecceeEeeccCchhhH
Q 013393 118 RIDWLQRDGILLLELDRLLRPG---GYFVYSSPEAYAHDPENRRIWNAMYD-LLKSMCWKIVSKKDQTVIWAKPISNSCY 193 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPG---G~lvis~p~~~~~~~~~~~~~~~l~~-l~~~~gf~~v~~~~~~~~w~k~l~~~c~ 193 (444)
.+-+.....++..=...||-- |+|.++. .+.+...|.++.+ +..++||-+...-.....|. +-...
T Consensus 230 -peTi~alk~FlgRGI~tLkg~~~aGyfgiT~------ressidkW~eiQr~lIn~~gvVITdiirnFN~Y~---nwey~ 299 (354)
T COG1568 230 -PETIKALKLFLGRGIATLKGEGCAGYFGITR------RESSIDKWREIQRILINEMGVVITDIIRNFNEYV---NWEYI 299 (354)
T ss_pred -hhhHHHHHHHHhccHHHhcCCCccceEeeee------ccccHHHHHHHHHHHHHhcCeeeHhhhhhhhccc---ccccc
Confidence 333344556777777778766 8999853 3455678999988 89999995543322111111 11111
Q ss_pred hhcCCCCCCCcccCCCCcchhhhhcccccccccc
Q 013393 194 LKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYS 227 (444)
Q Consensus 194 ~~~~~~~~p~lc~~~~~~~~awy~~l~~ci~~~p 227 (444)
..+.+...++.- ..++..||......|..++
T Consensus 300 ~et~a~~l~pvK---klpe~iwy~s~~frIetlk 330 (354)
T COG1568 300 EETRAWKLAPVK---KLPEDIWYKSYMFRIETLK 330 (354)
T ss_pred hhhhhhhhcccc---cCchhhhhhhheeeeeeec
Confidence 222222333322 3446779888777776666
No 372
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=72.86 E-value=9.3 Score=39.94 Aligned_cols=67 Identities=21% Similarity=0.344 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCC
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP 91 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~ 91 (444)
.+|...+...+......+..| .. -|||+|+|||.++...+++ .|+++++-..|. ..++....++|-.
T Consensus 46 iky~~gi~~tIte~kh~~~~g-kv-~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~-d~arkI~~kng~S 115 (636)
T KOG1501|consen 46 IKYRLGIEKTITEPKHVLDIG-KV-FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMV-DLARKIMHKNGMS 115 (636)
T ss_pred HHHHHHHHHHhcccceeccCc-eE-EEEEccCCccHHHHHHHHhcCCeEEeehhhchHH-HHHHHHHhcCCCc
Confidence 456666666665443332222 22 5999999999998877764 466666555443 2233344444443
No 373
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=71.92 E-value=10 Score=39.36 Aligned_cols=116 Identities=18% Similarity=0.135 Sum_probs=71.4
Q ss_pred eeEEEecccccchhhhhccCC-CceEEEeccccCC-----CchhHHhhccccc---ccccc---ccCCCCCCcccchhhc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-----ARLKIIYDRGLIG---TVHDW---CESFSTYPRTYDLLHA 356 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-----~~l~~~~~rg~~~---~~~~~---~~~~~~y~~~~dl~h~ 356 (444)
-..++|+.+|-|.|+.+|... |-+ |++=++-. ..+.-+-.+||=. +..|- .+.|+ +.++|.|+.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~--~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~--~~s~D~I~l 198 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNK--LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP--SNSVEKIFV 198 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCC--CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC--CCceeEEEE
Confidence 347999999999999999743 322 44444432 1222344556422 12232 23454 478999986
Q ss_pred cccccccc-c---CCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHHHhhc-ccee
Q 013393 357 WKVFSEIE-E---RGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITAL-KWDG 410 (444)
Q Consensus 357 ~~~~~~~~-~---~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~~~~~-~w~~ 410 (444)
. |..-+ + +|=-....|-|+=|+|+|||.+.++ |..+..+.+.+.+... +++.
T Consensus 199 n--FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 199 H--FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred e--CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 5 44211 1 2223478999999999999999875 6777777766665544 4443
No 374
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=71.09 E-value=10 Score=38.71 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=39.0
Q ss_pred ccCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh
Q 013393 3 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS 64 (444)
Q Consensus 3 ~~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~ 64 (444)
.+||.+.-|.-+..|..-...+.-.+-+.+.. ..+..++++|.|+|.++..+++
T Consensus 44 ~~GDFiTApels~lFGella~~~~~~wq~~g~--------p~~~~lvEiGaG~G~l~~DiL~ 97 (370)
T COG1565 44 RKGDFITAPELSQLFGELLAEQFLQLWQELGR--------PAPLKLVEIGAGRGTLASDILR 97 (370)
T ss_pred ccCCeeechhHHHHHHHHHHHHHHHHHHHhcC--------CCCceEEEeCCCcChHHHHHHH
Confidence 46788888888888877777665544444432 2234799999999999988876
No 375
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=70.60 E-value=6.2 Score=37.13 Aligned_cols=133 Identities=19% Similarity=0.269 Sum_probs=80.7
Q ss_pred EEEecccccchhhhhccC-CCceEEEeccccCCCch-hH----Hhhcccc----ccccccccC-------CCCCCcccch
Q 013393 291 NVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMSARL-KI----IYDRGLI----GTVHDWCES-------FSTYPRTYDL 353 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~~~~l-~~----~~~rg~~----~~~~~~~~~-------~~~y~~~~dl 353 (444)
.|+.+.+|-|==|+.+.. .|- .---|++-..++ +- |.+-|+- .+.-|-+.+ -+.++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 789999988864444431 131 224466654333 32 4455652 333333333 2346789999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCcEEEE------------------------ecc---HHHHHHHHHHHhhc
Q 013393 354 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII------------------------RDK---SSIINYIRKFITAL 406 (444)
Q Consensus 354 ~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~------------------------rd~---~~~~~~~~~~~~~~ 406 (444)
|=+.+++- +....| .+-++-+.-|.|+|||.+++ ||. .--++.|..++.+-
T Consensus 106 i~~~N~lH-I~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 106 IFCINMLH-ISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAH 183 (204)
T ss_pred eeehhHHH-hcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHC
Confidence 98888875 443333 58889999999999999999 221 01145677777766
Q ss_pred cceeEEeccccccCCCCCCCceEEEEEe
Q 013393 407 KWDGWLSEVEPRIDALSSSEERVLIAKK 434 (444)
Q Consensus 407 ~w~~~~~~~~~~~~~~~~~~~~~l~~~k 434 (444)
..+... ++ +=|. ..++||.+|
T Consensus 184 GL~l~~-~~---~MPA---NN~~Lvfrk 204 (204)
T PF06080_consen 184 GLELEE-DI---DMPA---NNLLLVFRK 204 (204)
T ss_pred CCccCc-cc---ccCC---CCeEEEEeC
Confidence 665421 11 1233 478999887
No 376
>PRK10742 putative methyltransferase; Provisional
Probab=69.41 E-value=16 Score=35.40 Aligned_cols=72 Identities=15% Similarity=0.071 Sum_probs=43.2
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc-------C----CCcEEEEecCcc-CCCCCCCccEE
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-------G----IPSTLGVLGTKR-LPYPSRSFELA 112 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~-------~----~~~~~~~~d~~~-lp~~~~sFDlI 112 (444)
+|||+=+|+|..+..++.+ .|+.++-++.-.. .++-..++ + .++.+...|... +.-...+||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaa--lL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAA--LLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHH--HHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 6999999999999999885 4677777665422 22211111 1 124444555333 22223479999
Q ss_pred Eeccccccc
Q 013393 113 HCSRCRIDW 121 (444)
Q Consensus 113 ~~~~~~l~~ 121 (444)
+.--. +++
T Consensus 169 YlDPM-fp~ 176 (250)
T PRK10742 169 YLDPM-FPH 176 (250)
T ss_pred EECCC-CCC
Confidence 98663 444
No 377
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=69.41 E-value=3.9 Score=36.91 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=65.7
Q ss_pred ceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhH----Hhhccc---cccccccccCCCCCCcccchhhccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKI----IYDRGL---IGTVHDWCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~----~~~rg~---~~~~~~~~~~~~~y~~~~dl~h~~~ 358 (444)
.-.+++|+.+|.|-.+.++... |-.- |+=++- ++-+.. +-.-|+ --+.+|+.+++. +..||+|=++-
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NP 106 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNP 106 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE--
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEcc
Confidence 3457999999999888777543 3322 333332 233332 222332 234567777776 69999987765
Q ss_pred ccccccc-CCCChhhhhhhhcccccCCcEE--EEeccHHHHHHHHHHHh
Q 013393 359 VFSEIEE-RGCSFEDLLIEMDRMLRPEGFV--IIRDKSSIINYIRKFIT 404 (444)
Q Consensus 359 ~~~~~~~-~~c~~~~~~~e~drilrp~g~~--~~rd~~~~~~~~~~~~~ 404 (444)
=|..... ....+..++-+-=++|+|||.+ ++......-..++++..
T Consensus 107 P~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 107 PFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp -SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred chhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 4431111 1234678888999999999977 44555444444444443
No 378
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=68.89 E-value=11 Score=37.71 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=24.2
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDV 77 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~di 77 (444)
.++|.=||.|..+..++++ .|+|+|.++..+
T Consensus 23 iyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al 57 (305)
T TIGR00006 23 IYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAI 57 (305)
T ss_pred EEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence 8999999999999998874 466666655433
No 379
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=68.79 E-value=4.9 Score=39.27 Aligned_cols=104 Identities=11% Similarity=0.128 Sum_probs=54.4
Q ss_pred CCceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhc-----c-----ccccc-cccccCCCCCCcccch
Q 013393 286 KNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR-----G-----LIGTV-HDWCESFSTYPRTYDL 353 (444)
Q Consensus 286 ~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~r-----g-----~~~~~-~~~~~~~~~y~~~~dl 353 (444)
.++-++|+++..+-|+++..+.+.+. +.+|+=++-. +.+...-+. | -+-+. .|--+-....+++||+
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 44456999999999999987765441 1233333322 222211110 0 01111 1211212234789999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 354 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 354 ~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
|=++...........-....+-.+-|+|+|||.+++.
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 8665432210000011345566788999999999985
No 380
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=67.96 E-value=11 Score=38.29 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=41.8
Q ss_pred eEEEECCCcchHHHHHhh--CCceEEEcCcccchH---HH---HHHHHHcCC---CcEEEEecCccCCCC-CCCccEEEe
Q 013393 47 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHE---NQ---IQFALERGI---PSTLGVLGTKRLPYP-SRSFELAHC 114 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~---a~---i~~a~e~~~---~~~~~~~d~~~lp~~-~~sFDlI~~ 114 (444)
-|+|-=-|||++....+. +.|+|.||...+++. +. ...-++.+. ...+..+|...-|.- ...||.|+|
T Consensus 211 ivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDaIvc 290 (421)
T KOG2671|consen 211 IVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDAIVC 290 (421)
T ss_pred EEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceeeEEEe
Confidence 899999999987554443 578888888777652 11 111122221 233446666555543 457999999
No 381
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=67.88 E-value=22 Score=35.45 Aligned_cols=92 Identities=21% Similarity=0.183 Sum_probs=52.0
Q ss_pred CCCCCCCCCeEEEECCC-cchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 38 KLNNGGNIRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCG-tG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
.++++. +||=.|+| .|.++..+++.. |..+...+.++...+.+++.|....+ +.... ..+.+|+++-..
T Consensus 162 ~~~~g~---~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~Ga~~vi---~~~~~--~~~~~d~~i~~~ 231 (329)
T TIGR02822 162 SLPPGG---RLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALALGAASAG---GAYDT--PPEPLDAAILFA 231 (329)
T ss_pred CCCCCC---EEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHhCCceec---ccccc--CcccceEEEECC
Confidence 344544 89989975 344555555531 11222223445566778777654322 11111 124588765322
Q ss_pred ccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 117 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 117 ~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
. . ...+.+..+.|++||.+++..
T Consensus 232 ~------~-~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 232 P------A-GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred C------c-HHHHHHHHHhhCCCcEEEEEe
Confidence 1 1 247888999999999998854
No 382
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=67.46 E-value=97 Score=30.15 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=62.3
Q ss_pred CCeEEEECCCcchHHHHHhhC-CceEEEcCcccchHHHHHHHHHc----CCCcEEEEecCc-cCC--CCCCCc----cEE
Q 013393 45 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTK-RLP--YPSRSF----ELA 112 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~-~V~gvdis~~dis~a~i~~a~e~----~~~~~~~~~d~~-~lp--~~~~sF----DlI 112 (444)
.+.|+.+|||-=.-+..+... ++.-.+++-.++-+...+.-.+. ..+..+...|.. .+. .....| -.+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 447999999988766666432 45566666555544444443332 223455555543 111 111122 345
Q ss_pred EeccccccccccH--HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 113 HCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 113 ~~~~~~l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+...+++.|++.. ..+|+.+.+...||+.+++....
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 5566778886544 47999999988899999986433
No 383
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=66.60 E-value=12 Score=38.20 Aligned_cols=99 Identities=16% Similarity=0.192 Sum_probs=60.5
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC-CCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~-~~sFDlI~~~~~~l 119 (444)
..+|||.=+|||.=++.++.. .++.-|++|..+.-...+.....+.+......|+..+-.. ...||+|=. =
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----D 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----D 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----C
Confidence 458999999999877666542 3444555554433333222222244455444554333222 367888852 2
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+| -.+..++..+.+.+|.||++.++...
T Consensus 129 PF-GSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 129 PF-GSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred CC-CCCchHHHHHHHHhhcCCEEEEEecc
Confidence 23 45568999999999999999997644
No 384
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=66.48 E-value=7.1 Score=38.11 Aligned_cols=90 Identities=20% Similarity=0.387 Sum_probs=61.2
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccCCCc-hhHHhhcccc-ccccccccCCCCCCcccchhhcccccccccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSAR-LKIIYDRGLI-GTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 365 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~~~-l~~~~~rg~~-~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~ 365 (444)
+.++++|..||=|+--+.|... .-+|.-+...-+ ---.-.||.- =-..||-+. +..||+|-|-+|+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvLD---- 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVLD---- 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhhh----
Confidence 5778999999999998888531 112333332211 1234568862 122346543 57799999999988
Q ss_pred CCCC-hhhhhhhhcccccCCcEEEE
Q 013393 366 RGCS-FEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 366 ~~c~-~~~~~~e~drilrp~g~~~~ 389 (444)
||. -..+|-+|-+-|+|+|.+|+
T Consensus 163 -Rc~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 163 -RCDRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred -ccCCHHHHHHHHHHHhCCCCEEEE
Confidence 565 45677789999999999998
No 385
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=66.00 E-value=3.6 Score=38.84 Aligned_cols=39 Identities=31% Similarity=0.457 Sum_probs=28.7
Q ss_pred cccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 349 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 349 ~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
-+||-|-+.-++-..+ +-+.+|-|+-|+|||||.+|+=+
T Consensus 144 ~s~DtVV~TlvLCSve----~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCSVE----DPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred CCeeeEEEEEEEeccC----CHHHHHHHHHHhcCCCcEEEEEe
Confidence 5788776655542122 36778999999999999999843
No 386
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=65.52 E-value=14 Score=38.12 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=48.5
Q ss_pred CcccchHHHHHHHHHcCCCcEEEEecCccC-C-CCCCCccEEEeccccccccccH--HHHHHHHHhhcCCCeEEEEEc
Q 013393 73 APNDVHENQIQFALERGIPSTLGVLGTKRL-P-YPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 73 s~~dis~a~i~~a~e~~~~~~~~~~d~~~l-p-~~~~sFDlI~~~~~~l~~~~d~--~~~L~ei~rvLkPGG~lvis~ 146 (444)
-|.-+.+..-+..+++-..+.+...+..+. . .++++||.++.+. ...|.++. .+.++++.+.++|||++++-.
T Consensus 258 ~P~YL~~e~f~~lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D-~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 258 CPPYLRPENFEALRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSD-HMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CChhhcHhHHHHHhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecc-hhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 344444444333333344556665554442 1 4578999999887 58886544 488999999999999999844
No 387
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=65.40 E-value=5.2 Score=42.02 Aligned_cols=104 Identities=17% Similarity=0.221 Sum_probs=52.4
Q ss_pred CCCeEEEECCCcc--hHHHHHhhC----CceEEEcCcccchHHHHHHH--HHcCCCcEEE-EecCccCCCC-CCCccEEE
Q 013393 44 NIRNVLDVGCGVA--SFGAYLLSH----DIIAMSLAPNDVHENQIQFA--LERGIPSTLG-VLGTKRLPYP-SRSFELAH 113 (444)
Q Consensus 44 ~~~rVLDVGCGtG--~~a~~La~~----~V~gvdis~~dis~a~i~~a--~e~~~~~~~~-~~d~~~lp~~-~~sFDlI~ 113 (444)
.+..++|+|.|.| .++....-+ .+..+|-+..+......+.- .+.+....-. +.--..+|.+ .+.||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 3447899988876 344444432 34445444433222211111 1111111111 1112345644 44599999
Q ss_pred eccccccccccHH---HHH-HHHHhhcCCCeEEEEEcCC
Q 013393 114 CSRCRIDWLQRDG---ILL-LELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 114 ~~~~~l~~~~d~~---~~L-~ei~rvLkPGG~lvis~p~ 148 (444)
|++. +++..+.. ... .-..+..++||++++..+.
T Consensus 280 ~ah~-l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 280 CAHK-LHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeee-eeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 9995 55433332 222 3345578899999987554
No 388
>KOG2730 consensus Methylase [General function prediction only]
Probab=65.39 E-value=5.5 Score=37.94 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=34.6
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc----CC--CcEEEEecCcc
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKR 101 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~----~~--~~~~~~~d~~~ 101 (444)
.|+|.-||.|..+..++.. .|+++|++|+-+ ..|+.+ |. .+.|.++|..+
T Consensus 97 ~iidaf~g~gGntiqfa~~~~~VisIdiDPikI-----a~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKI-----ACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCCeEEEEeccHHHH-----HHHhccceeecCCceeEEEechHHH
Confidence 7999999999888777664 677888887644 334333 43 45677777543
No 389
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=65.37 E-value=24 Score=33.05 Aligned_cols=87 Identities=23% Similarity=0.255 Sum_probs=49.5
Q ss_pred CeEEEECCCc-chHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC-------CCCCCccEEEe
Q 013393 46 RNVLDVGCGV-ASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------YPSRSFELAHC 114 (444)
Q Consensus 46 ~rVLDVGCGt-G~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp-------~~~~sFDlI~~ 114 (444)
.+||-.|+|. |..+..+++. .+++++ .++...+.+++.+....+ +..... ...+.+|+++.
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g~~v~~~~-----~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAGARVIVTD-----RSDEKLELAKELGADHVI---DYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEc-----CCHHHHHHHHHhCCceec---cCCcCCHHHHHHHhcCCCCCEEEE
Confidence 3899999985 5555555553 344443 333444555554422211 111111 12357999986
Q ss_pred ccccccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 115 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 115 ~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
... . ...+..+.+.|+++|.++....
T Consensus 208 ~~~--~-----~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 208 AVG--G-----PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCC--C-----HHHHHHHHHhcccCCEEEEEcc
Confidence 431 1 1457778889999999997543
No 390
>PHA01634 hypothetical protein
Probab=65.28 E-value=20 Score=31.32 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=22.8
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAP 74 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~ 74 (444)
.++|+|||++.|.-+.+++-+ .|++++.++
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~ 61 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEE 61 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCH
Confidence 358999999999999988753 566665443
No 391
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=65.19 E-value=6.1 Score=41.58 Aligned_cols=99 Identities=16% Similarity=0.272 Sum_probs=54.7
Q ss_pred eEEEecccccchhhhhccCC--CceEEEeccccC-CCchhHHh----hccccc---cccccccCCCCCCcccchhhcc--
Q 013393 290 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIY----DRGLIG---TVHDWCESFSTYPRTYDLLHAW-- 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~~~l~~~~----~rg~~~---~~~~~~~~~~~y~~~~dl~h~~-- 357 (444)
..|+||.++.||++..+.+. +- ..|+-++- ++-+..+- ..|+-. +-.|..+....+|.+||+|=.+
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 57999999999998777542 11 13444443 23343332 224311 1234333333456889987433
Q ss_pred ----cccccc-----ccCCCCh-------hhhhhhhcccccCCcEEEEe
Q 013393 358 ----KVFSEI-----EERGCSF-------EDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 358 ----~~~~~~-----~~~~c~~-------~~~~~e~drilrp~g~~~~r 390 (444)
|++.+. ....-.+ ..+|-+.=|.|+|||.+++-
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 333310 0000111 35788888999999999963
No 392
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=64.54 E-value=12 Score=35.89 Aligned_cols=74 Identities=18% Similarity=0.137 Sum_probs=36.3
Q ss_pred eEEEECCCcchHHHHHhh--CCceEEEcCcccch--HHHHHHHHHcCC-------CcEEEEecCcc-CCCCCCCccEEEe
Q 013393 47 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVH--ENQIQFALERGI-------PSTLGVLGTKR-LPYPSRSFELAHC 114 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis--~a~i~~a~e~~~-------~~~~~~~d~~~-lp~~~~sFDlI~~ 114 (444)
+|||.=+|-|.-+..++. ..|++++-+|.-.. ..-++.+..... .+.+...|..+ +..++++||+|++
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~ 157 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVYF 157 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEEE
T ss_pred EEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEEE
Confidence 799999999976665553 57888888876421 111222222211 34566666444 5556789999998
Q ss_pred ccccccc
Q 013393 115 SRCRIDW 121 (444)
Q Consensus 115 ~~~~l~~ 121 (444)
--+ ++.
T Consensus 158 DPM-Fp~ 163 (234)
T PF04445_consen 158 DPM-FPE 163 (234)
T ss_dssp --S----
T ss_pred CCC-CCC
Confidence 763 443
No 393
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=64.16 E-value=9.6 Score=37.92 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=57.7
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhc------cc--cccccccccCCCCCCccc----c-hhh
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR------GL--IGTVHDWCESFSTYPRTY----D-LLH 355 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~r------g~--~~~~~~~~~~~~~y~~~~----d-l~h 355 (444)
.+++|+.+|-|.++..|.+.-.=.-+|+++|-. .-|....++ ++ .++-.|-++.++ +|..+ + ++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEEEE
Confidence 479999999999888876431002468898854 555554433 11 233344444332 23333 2 333
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 356 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 356 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
..+.|.... .-+...+|-++=+.|+|||.++|
T Consensus 144 ~gs~~~~~~--~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 144 PGSTIGNFT--PEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred ecccccCCC--HHHHHHHHHHHHHhcCCCCEEEE
Confidence 333333221 22356789999999999999997
No 394
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=62.74 E-value=11 Score=34.84 Aligned_cols=54 Identities=22% Similarity=0.280 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-eEEEeeecceeEeecc
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVSKKDQTVIWAKP 187 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~g-f~~v~~~~~~~~w~k~ 187 (444)
.-....+.++.|+|||||.+++......... ..+..+.+..| |... ...+|.|+
T Consensus 33 ~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~-------~~~~~~~~~~g~~~~~----~~iiW~K~ 87 (231)
T PF01555_consen 33 EWMEEWLKECYRVLKPGGSIFIFIDDREIAG-------FLFELALEIFGGFFLR----NEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE-CCEECT-------HHHHHHHHHHTT-EEE----EEEEEE-S
T ss_pred HHHHHHHHHHHhhcCCCeeEEEEecchhhhH-------HHHHHHHHHhhhhhee----ccceeEec
Confidence 3345789999999999999998654432211 12333445456 7554 35678887
No 395
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=62.56 E-value=3.2 Score=38.80 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=32.2
Q ss_pred cccccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccHH
Q 013393 336 TVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS 394 (444)
Q Consensus 336 ~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~ 394 (444)
..||-++ .+..+.-||+|=|-+++.-.. .-.-..|+=-+-+.|+|||++++-.+..
T Consensus 123 ~~~NL~~-~~~~~~~fD~I~CRNVlIYF~--~~~~~~vl~~l~~~L~pgG~L~lG~sE~ 178 (196)
T PF01739_consen 123 RRHNLLD-PDPPFGRFDLIFCRNVLIYFD--PETQQRVLRRLHRSLKPGGYLFLGHSES 178 (196)
T ss_dssp EE--TT--S------EEEEEE-SSGGGS---HHHHHHHHHHHGGGEEEEEEEEE-TT--
T ss_pred EecccCC-CCcccCCccEEEecCEEEEeC--HHHHHHHHHHHHHHcCCCCEEEEecCcc
Confidence 3577777 455678999999999998322 2234567777889999999999965543
No 396
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=61.47 E-value=31 Score=33.90 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=48.1
Q ss_pred CeEEEECCC-cchHHHHHhhC-C---ceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC------CCCCCccEEEe
Q 013393 46 RNVLDVGCG-VASFGAYLLSH-D---IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP------YPSRSFELAHC 114 (444)
Q Consensus 46 ~rVLDVGCG-tG~~a~~La~~-~---V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp------~~~~sFDlI~~ 114 (444)
.+||-.|+| .|..+..+++. + ++.+ ..+......+++.+.. .+ .+..... ...+.+|+|+.
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~~~v~~~-----~~~~~~~~~~~~~g~~-~~--~~~~~~~~~~~~~~~~~~vd~v~~ 232 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGASRVTVA-----EPNEEKLELAKKLGAT-ET--VDPSREDPEAQKEDNPYGFDVVIE 232 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEE-----CCCHHHHHHHHHhCCe-EE--ecCCCCCHHHHHHhcCCCCcEEEE
Confidence 389999865 24555555553 2 2222 2234445555555543 11 1111111 13456999986
Q ss_pred ccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 115 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 115 ~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
... ....+.++.+.|+++|.++...
T Consensus 233 ~~~-------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 233 ATG-------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCC-------ChHHHHHHHHHHhcCCEEEEEe
Confidence 421 1357888899999999998653
No 397
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=61.32 E-value=0.88 Score=37.10 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=56.0
Q ss_pred EEecccccchhhhhccCCC--ceEEEeccccC-CCchhHHhhcc----c-cccccccccCCCCCCcccchhhcccc-ccc
Q 013393 292 VMDMNSNLGGFAAALKDKD--VWVMNVAPVRM-SARLKIIYDRG----L-IGTVHDWCESFSTYPRTYDLLHAWKV-FSE 362 (444)
Q Consensus 292 vmDm~a~~G~f~a~~~~~~--~wv~~~~~~~~-~~~l~~~~~rg----~-~~~~~~~~~~~~~y~~~~dl~h~~~~-~~~ 362 (444)
|+|+.+|-|....++.+.- .=-.+++-+|- +..|....++. + +=.++.=++.++..-.+||++=++++ |..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 5788888888888776420 00035555553 46666655555 2 12233333445555569999999766 654
Q ss_pred cccCCCChhhhhhhhcccccCCc
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEG 385 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g 385 (444)
+.. =+.+.++=+|=|+|||||
T Consensus 81 ~~~--~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSP--EELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSH--HHHHHHHHHHHHTEEEEE
T ss_pred CCH--HHHHHHHHHHHHHhCCCC
Confidence 332 358899999999999998
No 398
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=61.19 E-value=34 Score=33.65 Aligned_cols=92 Identities=12% Similarity=0.085 Sum_probs=49.3
Q ss_pred CeEEEECCC-cchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccccc
Q 013393 46 RNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 124 (444)
Q Consensus 46 ~rVLDVGCG-tG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d 124 (444)
.+||-+||| .|..+..+++.. |..+.....++...+.+++.+....+...+.....-..+.+|+++... .
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~--~----- 234 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV--V----- 234 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC--C-----
Confidence 378889886 566655566541 222333333455555655544322221111000000124689887532 1
Q ss_pred HHHHHHHHHhhcCCCeEEEEEc
Q 013393 125 DGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 125 ~~~~L~ei~rvLkPGG~lvis~ 146 (444)
....+.++.+.|+++|.++...
T Consensus 235 ~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred cHHHHHHHHHhcccCCEEEEEC
Confidence 1246788899999999998754
No 399
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=60.67 E-value=4.6 Score=40.11 Aligned_cols=45 Identities=18% Similarity=0.417 Sum_probs=35.2
Q ss_pred CcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccHH
Q 013393 348 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS 394 (444)
Q Consensus 348 ~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~ 394 (444)
+..||+|-|-++|.... .-.-..|+-.+-+.|+|||++++--+..
T Consensus 221 ~~~fD~I~cRNvliyF~--~~~~~~vl~~l~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFD--KTTQERILRRFVPLLKPDGLLFAGHSEN 265 (287)
T ss_pred CCCcceeeHhhHHhcCC--HHHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence 47899999999987332 2346788999999999999998866433
No 400
>PRK00811 spermidine synthase; Provisional
Probab=60.57 E-value=8.9 Score=37.85 Aligned_cols=104 Identities=12% Similarity=0.187 Sum_probs=56.2
Q ss_pred ccCCceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhc------cc-----ccc-ccccccCCCCCCc
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR------GL-----IGT-VHDWCESFSTYPR 349 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~r------g~-----~~~-~~~~~~~~~~y~~ 349 (444)
+..++-++|+++..|-|+.+..+.+. ++- +|+-++- +..+.+.-+. |+ +-+ ..|--+-+.+-+.
T Consensus 72 ~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~ 149 (283)
T PRK00811 72 FAHPNPKRVLIIGGGDGGTLREVLKHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETEN 149 (283)
T ss_pred hhCCCCCEEEEEecCchHHHHHHHcCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCC
Confidence 34455679999999999999988765 333 3444442 2222222110 11 111 1121111233357
Q ss_pred ccchhhccccccccccC-CCChhhhhhhhcccccCCcEEEEe
Q 013393 350 TYDLLHAWKVFSEIEER-GCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 350 ~~dl~h~~~~~~~~~~~-~c~~~~~~~e~drilrp~g~~~~r 390 (444)
+||+|=.+. +...... .---...+-++-|.|+|||.+++.
T Consensus 150 ~yDvIi~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 150 SFDVIIVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cccEEEECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 899986542 2211000 000145566889999999999995
No 401
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=60.02 E-value=7.6 Score=32.70 Aligned_cols=83 Identities=25% Similarity=0.306 Sum_probs=51.4
Q ss_pred CcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCc---cC-C-CCCCCccEEEeccccccccccH
Q 013393 54 GVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---RL-P-YPSRSFELAHCSRCRIDWLQRD 125 (444)
Q Consensus 54 GtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~---~l-p-~~~~sFDlI~~~~~~l~~~~d~ 125 (444)
|.|.++..+++. .|+++ +.++...+.+++.|....+...+.. .+ . .+.+.+|+|+-.- - -
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~-----~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~--g-----~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIAT-----DRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV--G-----S 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEE-----ESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESS--S-----S
T ss_pred ChHHHHHHHHHHcCCEEEEE-----ECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEec--C-----c
Confidence 467777777763 34444 4556777888887743332211110 00 1 2335799987432 1 2
Q ss_pred HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 126 GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 126 ~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
...+.+...+|+|||.+++..-.
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESST
T ss_pred HHHHHHHHHHhccCCEEEEEEcc
Confidence 46899999999999999986544
No 402
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=59.83 E-value=17 Score=39.06 Aligned_cols=92 Identities=15% Similarity=0.116 Sum_probs=54.4
Q ss_pred CCeEEEECCCcc-hHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-------------------
Q 013393 45 IRNVLDVGCGVA-SFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR------------------- 101 (444)
Q Consensus 45 ~~rVLDVGCGtG-~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~------------------- 101 (444)
+.+||=+|||.- ..+..+++. .|+++| .+....+.+++.+. .+...+..+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d-----~~~~rle~a~~lGa--~~v~v~~~e~g~~~~gYa~~~s~~~~~~ 236 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFD-----TRPEVKEQVQSMGA--EFLELDFKEEGGSGDGYAKVMSEEFIAA 236 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHHHHcCC--eEEeccccccccccccceeecCHHHHHH
Confidence 358999999964 555555543 344444 34445556655443 222222100
Q ss_pred ----CCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEE
Q 013393 102 ----LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 102 ----lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvi 144 (444)
++-.-..+|+|++.- .++-.+.+.-..+++.+.+|||+.++=
T Consensus 237 ~~~~~~e~~~~~DIVI~Ta-lipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 237 EMELFAAQAKEVDIIITTA-LIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHhCCCCEEEECc-ccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 110124699998765 455544555678899999999999873
No 403
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=59.77 E-value=20 Score=34.22 Aligned_cols=95 Identities=12% Similarity=0.218 Sum_probs=50.2
Q ss_pred cCCceeEEEecccccchh----hhhccCCCceEEEeccccC-CCchhH----Hhhccc---cccc-cccccCCCCC----
Q 013393 285 QKNTFRNVMDMNSNLGGF----AAALKDKDVWVMNVAPVRM-SARLKI----IYDRGL---IGTV-HDWCESFSTY---- 347 (444)
Q Consensus 285 ~~~~~rnvmDm~a~~G~f----~a~~~~~~~wv~~~~~~~~-~~~l~~----~~~rg~---~~~~-~~~~~~~~~y---- 347 (444)
+...-++++++..+.|.- |+++... - .|+-++. +..+.+ +-.-|+ |-+. .|..+.++..
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~-g---~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~ 140 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPED-G---RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNND 140 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCC-C---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCC
Confidence 344466999999877753 3344321 1 2333332 122222 223343 1111 2333333322
Q ss_pred -CcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 348 -PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 348 -~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
..+||++-.+.-=. ...+++-++=|.|||||.+++.
T Consensus 141 ~~~~fD~VfiDa~k~-------~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 141 PKPEFDFAFVDADKP-------NYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCCCCEEEECCCHH-------HHHHHHHHHHHhcCCCeEEEEE
Confidence 35899986665211 3456666778999999999973
No 404
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=59.28 E-value=58 Score=33.53 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=53.0
Q ss_pred CeEEEECCCcch----HHHHHhhC-------CceEEEc----Ccccch---HHHHHHHHHcCCCcEEEEe---cCccC--
Q 013393 46 RNVLDVGCGVAS----FGAYLLSH-------DIIAMSL----APNDVH---ENQIQFALERGIPSTLGVL---GTKRL-- 102 (444)
Q Consensus 46 ~rVLDVGCGtG~----~a~~La~~-------~V~gvdi----s~~dis---~a~i~~a~e~~~~~~~~~~---d~~~l-- 102 (444)
-.|+|+|.|.|. +...|+.+ .+++++. ....+. ....++|+..|.+..|... ..+.+
T Consensus 112 vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~ 191 (374)
T PF03514_consen 112 VHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDP 191 (374)
T ss_pred eEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCH
Confidence 369999999994 44445543 4566655 222222 2333466666888877763 22222
Q ss_pred ---CCCCCCccEEEecccccccccc-------HHHHHHHHHhhcCCCeEEEE
Q 013393 103 ---PYPSRSFELAHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 103 ---p~~~~sFDlI~~~~~~l~~~~d-------~~~~L~ei~rvLkPGG~lvi 144 (444)
...++..=+|.|.. .+|+..+ +...+-...|-|+|.-..+.
T Consensus 192 ~~l~~~~~E~laVn~~~-~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 192 SMLRLRPGEALAVNCMF-QLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred HHhCccCCcEEEEEeeh-hhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 12223333333444 4566532 33456677778999955444
No 405
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=58.79 E-value=47 Score=33.34 Aligned_cols=90 Identities=19% Similarity=0.172 Sum_probs=51.7
Q ss_pred CeEEEECCCc-chHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC--CCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGV-ASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGt-G~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l--p~~~~sFDlI~~~~~~l 119 (444)
.+||=+|+|. |.++..+++. .+++++-+ +.++...+.+++.+... .....+.. ....+.||+|+-.. -
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~--~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~--g 247 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRR--DPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEAT--G 247 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecC--CCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECc--C
Confidence 3789889863 5666666653 34444322 23456667777766532 11111110 00124689887543 1
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
....+.+..+.|++||.+++..
T Consensus 248 -----~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 248 -----VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred -----CHHHHHHHHHHccCCcEEEEEe
Confidence 1247888999999999998754
No 406
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=58.46 E-value=27 Score=32.67 Aligned_cols=101 Identities=9% Similarity=0.044 Sum_probs=62.5
Q ss_pred CCCeEEEECCCcchHHHHHhh--------CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCC------CCCCc
Q 013393 44 NIRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY------PSRSF 109 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~--------~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~------~~~sF 109 (444)
.++.|+++|.-.|.-+..+++ ..|+++|++-....++.++ -+.+.|...+...... ..+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 345799999988866655554 3688888877666555433 3456666665433210 01222
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
--|+...-.-|+++..-.-|+-..++|..|-|+++-+...
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v 183 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNV 183 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccc
Confidence 2333332235555555677888889999999999866443
No 407
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=58.40 E-value=18 Score=36.45 Aligned_cols=114 Identities=12% Similarity=0.133 Sum_probs=60.5
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhH----Hhhccccc--cccccccCCCCCCcccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLIG--TVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~----~~~rg~~~--~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
..++|.-+|-|+|+.++.... .+|+=++.. ..+.. +-.-|+-. +++.=...++.-+.+||+|=++-=|..
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 379999999999954332211 233333332 22221 11224432 222222233333468899887643321
Q ss_pred ---cccC--CCChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhccc
Q 013393 363 ---IEER--GCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKW 408 (444)
Q Consensus 363 ---~~~~--~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w 408 (444)
.... .+....++-|+-|+|+|||++++=-... .++++.++.-.|
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 1111 1235789999999999999886633221 144455666666
No 408
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=57.70 E-value=8.6 Score=35.84 Aligned_cols=93 Identities=24% Similarity=0.425 Sum_probs=60.5
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC----Cchh-HHhhcccc-c-cccccccCCCCCCcccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS----ARLK-IIYDRGLI-G-TVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~----~~l~-~~~~rg~~-~-~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
-.++|...|=|.=|-.|.++.- +|.-+|.. +.|. ++-.+||= = ...|. +.++ +|..||+|-+..+|-.
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl-~~~~-~~~~yD~I~st~v~~f 106 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADL-NDFD-FPEEYDFIVSTVVFMF 106 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG-CCBS--TTTEEEEEEESSGGG
T ss_pred CcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecc-hhcc-ccCCcCEEEEEEEecc
Confidence 3789999999998888875543 34444432 2333 44456763 2 22232 3333 5889999998888774
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEE
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
+. +=.+..|+-.|-.-++|||+.+|
T Consensus 107 L~--~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 107 LQ--RELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp S---GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred CC--HHHHHHHHHHHHhhcCCcEEEEE
Confidence 43 33578889999999999999988
No 409
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=56.77 E-value=19 Score=31.02 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=39.4
Q ss_pred CCccEEEeccccccccccH----HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 107 RSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 107 ~sFDlI~~~~~~l~~~~d~----~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
..||+|+--. +.-..++ ..+|+++.++++|||.+.--+. -..++..+.+.||.+....+
T Consensus 49 ~~~Da~ylDg--FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~------------a~~Vr~~L~~aGF~v~~~~g 111 (124)
T PF05430_consen 49 ARFDAWYLDG--FSPAKNPELWSEELFKKLARLSKPGGTLATYSS------------AGAVRRALQQAGFEVEKVPG 111 (124)
T ss_dssp T-EEEEEE-S--S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--------------BHHHHHHHHHCTEEEEEEE-
T ss_pred ccCCEEEecC--CCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec------------hHHHHHHHHHcCCEEEEcCC
Confidence 5789888643 1111233 4899999999999999885211 23588899999998876554
No 410
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=56.49 E-value=21 Score=37.42 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=60.1
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHh---h-ccccccc--cccccCC--CC--CCcccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY---D-RGLIGTV--HDWCESF--ST--YPRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~---~-rg~~~~~--~~~~~~~--~~--y~~~~dl~h~~ 357 (444)
..|+||.++-||++..+... + --.|+-++- +..|..+- + .|+=-.. ++ ...+ +. -+.+||.|-.+
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~-~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKD-GDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-cccccccccccccccCEEEEc
Confidence 58999999999999877642 1 012444443 34444332 2 2431001 11 1111 11 24679998754
Q ss_pred ------cccccccc-CCC-C----------hhhhhhhhcccccCCcEEEEe-------ccHHHHHHHHH
Q 013393 358 ------KVFSEIEE-RGC-S----------FEDLLIEMDRMLRPEGFVIIR-------DKSSIINYIRK 401 (444)
Q Consensus 358 ------~~~~~~~~-~~c-~----------~~~~~~e~drilrp~g~~~~r-------d~~~~~~~~~~ 401 (444)
|++.+.-. +.+ . -..+|-+.=|.|||||.+++- ++.+++.+.-+
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 45431100 000 0 256888999999999999985 66666655443
No 411
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=56.31 E-value=37 Score=33.56 Aligned_cols=92 Identities=17% Similarity=0.240 Sum_probs=48.6
Q ss_pred CeEEEECCCc-chHHHHHhhC-CceEEEcCcccchHHHHHHHHHcCCCcEEEEec--CccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGV-ASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG--TKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGt-G~~a~~La~~-~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d--~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+||-.|||. |..+..++++ ++. .+...+.++.+.+.+++.+....+...+ ...+....+.+|+|+....
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G~~--~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g---- 240 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAGAA--EIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG---- 240 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC----
Confidence 4788888864 5565556653 220 1222233444545555544322111000 1112112235899985431
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
....+.++.+.|+++|.++...
T Consensus 241 ---~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 ---APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ---CHHHHHHHHHHHhcCCEEEEEe
Confidence 1346788899999999998643
No 412
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=55.30 E-value=31 Score=33.91 Aligned_cols=136 Identities=15% Similarity=0.261 Sum_probs=82.7
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhh----ccc---cc-cccccccCCCCCCcccchhhcccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGL---IG-TVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~----rg~---~~-~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
..++|+.+|-|.++.+|... |.+ +|+-++. +..|.+.-. .|+ += +-.||+++++. ..||+|=++-=
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~--~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA--EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCC
Confidence 47999999999999888753 322 4555553 344443332 233 21 23578776632 37999866521
Q ss_pred ccc------c------ccCCC---------ChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHh-hccceeEEecccc
Q 013393 360 FSE------I------EERGC---------SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFIT-ALKWDGWLSEVEP 417 (444)
Q Consensus 360 ~~~------~------~~~~c---------~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~-~~~w~~~~~~~~~ 417 (444)
+.. + ..+.+ .+..++-+.-+.|+|||++++.-...--+.+++++. ...|... ...
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~-~~~-- 268 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDV-ENG-- 268 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCcee-EEe--
Confidence 110 0 00000 245678888999999999999877776777888776 4566421 111
Q ss_pred ccCCCCCCCceEEEEEec
Q 013393 418 RIDALSSSEERVLIAKKK 435 (444)
Q Consensus 418 ~~~~~~~~~~~~l~~~k~ 435 (444)
+| -.+.++++++++.
T Consensus 269 ~D---~~g~~R~~~~~~~ 283 (284)
T TIGR00536 269 RD---LNGKERVVLGFYH 283 (284)
T ss_pred cC---CCCCceEEEEEec
Confidence 11 3367999998764
No 413
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=55.07 E-value=39 Score=34.04 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=50.2
Q ss_pred CeEEEECCCc-chHHHHHhhCCceEEE-cCcccchHHHHHHHHHcCCCcEEEEecCccC-----C-CCCCCccEEEeccc
Q 013393 46 RNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRL-----P-YPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGt-G~~a~~La~~~V~gvd-is~~dis~a~i~~a~e~~~~~~~~~~d~~~l-----p-~~~~sFDlI~~~~~ 117 (444)
.+||=.|||. |..+..+++.. |.. +...+.++...+++++.+....+...+ ... . .....+|+|+-.-
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~-~~~~~~i~~~~~~~g~d~vid~~- 253 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWAREFGATHTVNSSG-TDPVEAIRALTGGFGADVVIDAV- 253 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHcCCceEEcCCC-cCHHHHHHHHhCCCCCCEEEECC-
Confidence 3888888752 45555566531 111 222244556667777666532221111 110 0 1223589887432
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
- . ...+.+..+.|++||.+++...
T Consensus 254 -g----~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 254 -G----R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -C----C-HHHHHHHHHHhccCCEEEEECC
Confidence 1 1 2467778899999999997643
No 414
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=53.90 E-value=59 Score=31.86 Aligned_cols=122 Identities=13% Similarity=0.238 Sum_probs=66.6
Q ss_pred eEEEECCCcchHHHHHhhCC---ceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC---CCCCCccEEEecc-c--
Q 013393 47 NVLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSR-C-- 117 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~---V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp---~~~~sFDlI~~~~-~-- 117 (444)
+++|+=||.|.+..-|.+++ +.++|+++ ...+.-+.+.. .....|...+. ++. .+|+++... |
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~-----~a~~~y~~N~~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDP-----DACETYKANFP--EVICGDITEIDPSDLPK-DVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSH-----HHHHHHHHHHT--EEEESHGGGCHHHHHHH-T-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCH-----HHHHhhhhccc--ccccccccccccccccc-cceEEEeccCCce
Confidence 69999999999988887765 34555544 34343333322 56667766654 443 599998742 1
Q ss_pred --ccc---ccccHH----HHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 118 --RID---WLQRDG----ILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 118 --~l~---~~~d~~----~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
... ...|.. .-+.++.+.++|--.++=..+... .......+..+.+.++++||.+....
T Consensus 74 fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~--~~~~~~~~~~i~~~l~~lGY~v~~~v 141 (335)
T PF00145_consen 74 FSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLL--SSKNGEVFKEILEELEELGYNVQWRV 141 (335)
T ss_dssp TSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGG--TGGGHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EeccccccccccccchhhHHHHHHHhhccceEEEecccceee--ccccccccccccccccccceeehhcc
Confidence 000 012222 234444556788643332222211 12223567888899999999876443
No 415
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=53.71 E-value=13 Score=33.74 Aligned_cols=109 Identities=24% Similarity=0.403 Sum_probs=60.2
Q ss_pred CCceeEEEecccccc--hhhhhccCCCceEEEeccccCCCchhH---Hhhc------c-ccccccccccCC--CC-CCcc
Q 013393 286 KNTFRNVMDMNSNLG--GFAAALKDKDVWVMNVAPVRMSARLKI---IYDR------G-LIGTVHDWCESF--ST-YPRT 350 (444)
Q Consensus 286 ~~~~rnvmDm~a~~G--~f~a~~~~~~~wv~~~~~~~~~~~l~~---~~~r------g-~~~~~~~~~~~~--~~-y~~~ 350 (444)
..+-.+|+...+|.| |.+||... ....||-+|.+..|+. -.++ + .--.-+||.++. .. -++.
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~---~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF---GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT----T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SS
T ss_pred hcCCceEEEECCccchhHHHHHhcc---CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccccccc
Confidence 344569999999888 88888871 2245565665544442 1111 1 234557898854 11 2578
Q ss_pred cchhhccccccccccCCCChhhhhhhhcccccCCcEEEE----e--ccHHHHHHHHH
Q 013393 351 YDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII----R--DKSSIINYIRK 401 (444)
Q Consensus 351 ~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~----r--d~~~~~~~~~~ 401 (444)
||+|-|+-++=. . -..+.++-=++++|.|+|.+++ | ....+++++++
T Consensus 120 ~D~IlasDv~Y~-~---~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 120 FDVILASDVLYD-E---ELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLKK 172 (173)
T ss_dssp BSEEEEES--S--G---GGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH--
T ss_pred CCEEEEecccch-H---HHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhhh
Confidence 999999998752 1 2366777778999999999877 2 23445555543
No 416
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=53.37 E-value=46 Score=31.01 Aligned_cols=100 Identities=12% Similarity=0.173 Sum_probs=60.0
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhh----ccccccccccccCCCCCCcccchhhccccccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGLIGTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~----rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
.-.+|+|+.++-|.|+..|.+... .|+-++. ++-+...-+ .|+-...+--+..++.-+.+||++-+.++|.+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 346899999999999998875432 2444443 233333222 22211111112225555688999999888853
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
.. .-.+..++-++-|++++++.+.+...
T Consensus 140 ~~--~~~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 140 YP--QEDAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred CC--HHHHHHHHHHHHhhcCCeEEEEECCc
Confidence 32 23477888888888876666665443
No 417
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=53.17 E-value=3.1 Score=30.55 Aligned_cols=10 Identities=50% Similarity=1.597 Sum_probs=8.5
Q ss_pred cccccccccC
Q 013393 334 IGTVHDWCES 343 (444)
Q Consensus 334 ~~~~~~~~~~ 343 (444)
+|.+|.|||.
T Consensus 57 vgqfh~wceq 66 (68)
T PF13051_consen 57 VGQFHEWCEQ 66 (68)
T ss_pred HHHHHHHHhh
Confidence 6889999984
No 418
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=53.02 E-value=44 Score=33.46 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=47.9
Q ss_pred CeEEEECCCc-chHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGV-ASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGt-G~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+||=+|||. |.++..++++ .|++++. ++...+.+++.+. ... . ..+. ....+|+|+-.- -
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~-----~~~k~~~a~~~~~--~~~-~--~~~~-~~~g~d~viD~~--G 231 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFGK-----HQEKLDLFSFADE--TYL-I--DDIP-EDLAVDHAFECV--G 231 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeC-----cHhHHHHHhhcCc--eee-h--hhhh-hccCCcEEEECC--C
Confidence 3899999863 5555554442 3555544 3455556654222 111 1 1111 112489887432 1
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
. ......+.+..+.|++||.+++..
T Consensus 232 ~--~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 232 G--RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred C--CccHHHHHHHHHhCcCCcEEEEEe
Confidence 1 112457888999999999998754
No 419
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=52.88 E-value=24 Score=28.83 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=35.3
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
+|| +-||+|.-+..+++ .+.+.+.+++.++.+...+..+++-....+|+|+...
T Consensus 5 ~IL-l~C~~G~sSS~l~~---------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~p 58 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVN---------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAP 58 (95)
T ss_pred EEE-EECCCchhHHHHHH---------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECc
Confidence 577 66999965555543 2335677788888887777555542234689998654
No 420
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=52.82 E-value=16 Score=34.85 Aligned_cols=85 Identities=21% Similarity=0.330 Sum_probs=54.0
Q ss_pred cccccCCC-CCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEE--------------eccHHHHHHHHHH
Q 013393 338 HDWCESFS-TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII--------------RDKSSIINYIRKF 402 (444)
Q Consensus 338 ~~~~~~~~-~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~--------------rd~~~~~~~~~~~ 402 (444)
-|+=|-++ ...=+||||=.+. .+ -+....+=+.=+.|||||.+++ ||......+++..
T Consensus 119 gdal~~l~~~~~~~fDliFIDa----dK---~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG4122 119 GDALDVLSRLLDGSFDLVFIDA----DK---ADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDF 191 (219)
T ss_pred CcHHHHHHhccCCCccEEEEeC----Ch---hhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHH
Confidence 37777777 4778899975554 22 2355555566667999999998 3444666667777
Q ss_pred HhhccceeEEeccccccCCCCCCCceEEEEEec
Q 013393 403 ITALKWDGWLSEVEPRIDALSSSEERVLIAKKK 435 (444)
Q Consensus 403 ~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k~ 435 (444)
..-+.++-+... .--|. .+.++++.|.
T Consensus 192 ~~~~~~~~~~~t---~~lP~---gDGl~v~~k~ 218 (219)
T COG4122 192 NDYLLEDPRYDT---VLLPL---GDGLLLSRKR 218 (219)
T ss_pred HHHHhhCcCcee---EEEec---CCceEEEeec
Confidence 776666542211 11122 4789999885
No 421
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=52.70 E-value=1.2e+02 Score=29.36 Aligned_cols=86 Identities=20% Similarity=0.179 Sum_probs=42.2
Q ss_pred CcEEEEecCcc-CC-CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHH
Q 013393 91 PSTLGVLGTKR-LP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK 168 (444)
Q Consensus 91 ~~~~~~~d~~~-lp-~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~ 168 (444)
++.+..+.+.+ +| .+.+.+-+++.-. .+-+.-...|..++..|.|||++++-+... +- .-..+.+..+
T Consensus 158 ~v~~vkG~F~dTLp~~p~~~IAll~lD~---DlYesT~~aLe~lyprl~~GGiIi~DDY~~----~g---cr~AvdeF~~ 227 (248)
T PF05711_consen 158 NVRFVKGWFPDTLPDAPIERIALLHLDC---DLYESTKDALEFLYPRLSPGGIIIFDDYGH----PG---CRKAVDEFRA 227 (248)
T ss_dssp TEEEEES-HHHHCCC-TT--EEEEEE------SHHHHHHHHHHHGGGEEEEEEEEESSTTT----HH---HHHHHHHHHH
T ss_pred cEEEECCcchhhhccCCCccEEEEEEec---cchHHHHHHHHHHHhhcCCCeEEEEeCCCC----hH---HHHHHHHHHH
Confidence 56666665433 44 2334444443221 111334578999999999999999954322 22 2234555666
Q ss_pred hcCeE--EEeeecceeEeec
Q 013393 169 SMCWK--IVSKKDQTVIWAK 186 (444)
Q Consensus 169 ~~gf~--~v~~~~~~~~w~k 186 (444)
+.|.. +.......+.|+|
T Consensus 228 ~~gi~~~l~~id~~~v~w~k 247 (248)
T PF05711_consen 228 EHGITDPLHPIDWTGVYWRK 247 (248)
T ss_dssp HTT--S--EE-SSS-EEEE-
T ss_pred HcCCCCccEEecCceEEEec
Confidence 66653 3333344556765
No 422
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.43 E-value=51 Score=33.35 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=55.6
Q ss_pred CeEEEECCCc-chHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCc---cC------CCCCCCccEEEec
Q 013393 46 RNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---RL------PYPSRSFELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGt-G~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~---~l------p~~~~sFDlI~~~ 115 (444)
.+||=+|+|. |..+...+++ .=+.++.-.|+.+..++.|++-|..+........ .+ -+....||+.+-.
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka-~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dC 249 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKA-MGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDC 249 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHH-cCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEc
Confidence 3899999995 5555555553 0022333345567788888887765544333211 10 0223457877632
Q ss_pred cccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 116 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 116 ~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
. -.+..++.....+|+||.+++..
T Consensus 250 s-------G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 250 S-------GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred c-------CchHHHHHHHHHhccCCEEEEec
Confidence 2 22356777788999999988764
No 423
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=52.03 E-value=29 Score=32.43 Aligned_cols=97 Identities=11% Similarity=0.196 Sum_probs=61.8
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcc----c---cccccccccCCCCCCcccchhhcccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----L---IGTVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg----~---~~~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
+-..++|..++-|.++..|.+... .|+=++. ++.+....+|- + +... |..+..-|.+||++=+..+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~---~~d~~~~~~~fD~ii~~~~ 128 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFE---VNDLLSLCGEFDIVVCMDV 128 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEE---ECChhhCCCCcCEEEEhhH
Confidence 345899999999999999986532 4454553 34555544442 1 1122 2222233488999877666
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
+.... ...+..++-++.|+++|++.+.+-..
T Consensus 129 l~~~~--~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 129 LIHYP--ASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred HHhCC--HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 65321 23477889999999998888877443
No 424
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=51.88 E-value=65 Score=31.71 Aligned_cols=96 Identities=9% Similarity=0.097 Sum_probs=53.3
Q ss_pred CCCCCCCCCeEEEECC--CcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC-----CCCCCCcc
Q 013393 38 KLNNGGNIRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFE 110 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGC--GtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-----p~~~~sFD 110 (444)
.++++. +||=.|. |.|..+..+++.. |..+.....++...+++++.|....+...+...+ ....+.+|
T Consensus 135 ~~~~g~---~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvd 209 (325)
T TIGR02825 135 GVKGGE---TVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYD 209 (325)
T ss_pred CCCCCC---EEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeE
Confidence 344444 7888884 4677777777642 2222222334556667766665332221111011 01234689
Q ss_pred EEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 111 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 111 lI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+|+-.. . ...+.+..+.|++||.++...
T Consensus 210 vv~d~~------G--~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 210 CYFDNV------G--GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEEECC------C--HHHHHHHHHHhCcCcEEEEec
Confidence 887432 1 134688899999999999743
No 425
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=51.40 E-value=15 Score=39.92 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=26.3
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccc
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDV 77 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~di 77 (444)
+.|||+||..|.|.....+ .-|+|+|+.|+-.
T Consensus 46 ~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp 82 (780)
T KOG1098|consen 46 HVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP 82 (780)
T ss_pred chheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc
Confidence 3899999999999887765 2578999988754
No 426
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.07 E-value=97 Score=30.99 Aligned_cols=122 Identities=11% Similarity=0.212 Sum_probs=61.8
Q ss_pred EEEECCCcchHHHHHhhCC---ceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC-CCCccEEEeccccccc--
Q 013393 48 VLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDW-- 121 (444)
Q Consensus 48 VLDVGCGtG~~a~~La~~~---V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~-~~sFDlI~~~~~~l~~-- 121 (444)
|+|+-||.|.+..-|.+++ +.++|+ .+...+.-+.+... .+...|...+... -..+|+++...---.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~-----~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ 74 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEI-----DKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSI 74 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeC-----CHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccch
Confidence 6899999999888887654 233444 34444443333322 3334565554311 1248998864200111
Q ss_pred ------cccH-HHHHHHHHhh---cCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 122 ------LQRD-GILLLELDRL---LRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 ------~~d~-~~~L~ei~rv---LkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
..|. ..++.+..|+ ++|. ++++---.... .......+..+...+++.||.+...
T Consensus 75 ag~~~~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~l~-~~~~~~~~~~i~~~l~~~GY~v~~~ 138 (315)
T TIGR00675 75 AGKRKGFEDTRGTLFFEIVRILKEKKPK-FFLLENVKGLV-SHDKGRTFKVIIETLEELGYKVYYK 138 (315)
T ss_pred hcccCCCCCchhhHHHHHHHHHhhcCCC-EEEeeccHHHH-hcccchHHHHHHHHHHhCCCEEEEE
Confidence 1222 2455555444 4775 33332111100 0111245677888888899976543
No 427
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=50.70 E-value=57 Score=31.07 Aligned_cols=86 Identities=20% Similarity=0.180 Sum_probs=47.2
Q ss_pred eEEEECCCc-chHHHHHhhC---C-ceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGV-ASFGAYLLSH---D-IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGt-G~~a~~La~~---~-V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
+||=.|||. |..+..++++ . ++++ +.++...+.+++.+....+. ....-....+.+|+|+... .
T Consensus 100 ~vlI~g~g~vg~~~i~~a~~~g~~~vi~~-----~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~d~vl~~~--~-- 168 (277)
T cd08255 100 RVAVVGLGLVGLLAAQLAKAAGAREVVGV-----DPDAARRELAEALGPADPVA--ADTADEIGGRGADVVIEAS--G-- 168 (277)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCcEEEE-----CCCHHHHHHHHHcCCCcccc--ccchhhhcCCCCCEEEEcc--C--
Confidence 788888764 4455555553 2 3333 33455556666655111111 1110011235689888532 1
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
....+.+..+.|+++|.++...
T Consensus 169 ---~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 ---SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ---ChHHHHHHHHHhcCCcEEEEEe
Confidence 1246788899999999998653
No 428
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=49.33 E-value=15 Score=36.29 Aligned_cols=102 Identities=19% Similarity=0.370 Sum_probs=72.9
Q ss_pred HHHHhhhhccCCceeEEEecccccchhhhhccCC-CceEEEecccc-CCCchh----HHhhcccc----ccccccccCCC
Q 013393 276 YWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLK----IIYDRGLI----GTVHDWCESFS 345 (444)
Q Consensus 276 y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~-~~~~l~----~~~~rg~~----~~~~~~~~~~~ 345 (444)
-..+++ |+.++ -++|+..|+||.+-.+... .|=| +-++ +++++. -|-++||- =..+||-+.=.
T Consensus 64 ~~~kl~--L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V---~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e 136 (283)
T COG2230 64 ILEKLG--LKPGM--TLLDIGCGWGGLAIYAAEEYGVTV---VGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE 136 (283)
T ss_pred HHHhcC--CCCCC--EEEEeCCChhHHHHHHHHHcCCEE---EEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc
Confidence 344555 55554 5999999999988766543 4544 4444 235554 47889996 44788865433
Q ss_pred CCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 346 TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 346 ~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
.||=|=+-|.|-+... -+..+.+-=+.++|+|||.+++.
T Consensus 137 ----~fDrIvSvgmfEhvg~--~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 137 ----PFDRIVSVGMFEHVGK--ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred ----ccceeeehhhHHHhCc--ccHHHHHHHHHhhcCCCceEEEE
Confidence 3898999999986654 25888888899999999999874
No 429
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=48.62 E-value=28 Score=32.48 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=59.8
Q ss_pred eeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhccc-ccccc-ccccCCCCCCcccchhhccccccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL-IGTVH-DWCESFSTYPRTYDLLHAWKVFSEIE 364 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~rg~-~~~~~-~~~~~~~~y~~~~dl~h~~~~~~~~~ 364 (444)
-..|+|..++.|-++..|... |- .+|+-++- ++-+...-++-- +-+.+ |-.++|+ +++||+|-+.+++.++.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhCC
Confidence 346999999999999988754 31 24555553 344444333210 22222 3334443 58999999999998653
Q ss_pred cCCCChhhhhhhhcccccCCcEEEE
Q 013393 365 ERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 365 ~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
. =.+..++-||.|++ +++++|
T Consensus 120 p--~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 120 P--DNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred H--HHHHHHHHHHHhhc--CcEEEE
Confidence 2 25788899999998 467777
No 430
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=48.50 E-value=37 Score=34.16 Aligned_cols=94 Identities=19% Similarity=0.227 Sum_probs=56.3
Q ss_pred CCCCCCCCCeEEEECC--CcchHHHHHhhC-C--ceEEEcCcccchHHHHHHHHHcCCCcEEE--EecCc-cC-C-CCCC
Q 013393 38 KLNNGGNIRNVLDVGC--GVASFGAYLLSH-D--IIAMSLAPNDVHENQIQFALERGIPSTLG--VLGTK-RL-P-YPSR 107 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGC--GtG~~a~~La~~-~--V~gvdis~~dis~a~i~~a~e~~~~~~~~--~~d~~-~l-p-~~~~ 107 (444)
.+++++ +||=.|. |.|.++..|+++ + ++++ -.+.+..+++++.+....+. ..|.. .. . ....
T Consensus 139 ~l~~g~---~VLV~gaaGgVG~~aiQlAk~~G~~~v~~-----~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~ 210 (326)
T COG0604 139 GLKPGE---TVLVHGAAGGVGSAAIQLAKALGATVVAV-----VSSSEKLELLKELGADHVINYREEDFVEQVRELTGGK 210 (326)
T ss_pred CCCCCC---EEEEecCCchHHHHHHHHHHHcCCcEEEE-----ecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCC
Confidence 455655 8999885 567899999885 2 2222 12234444666666544333 11111 11 1 1234
Q ss_pred CccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 108 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 108 sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
.+|+|+..- ....+.+..+.|+++|.++....
T Consensus 211 gvDvv~D~v--------G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 211 GVDVVLDTV--------GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CceEEEECC--------CHHHHHHHHHHhccCCEEEEEec
Confidence 699998653 23577788999999999997543
No 431
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=48.15 E-value=14 Score=39.08 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=58.9
Q ss_pred CeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHc----CCC--cEEEEecCcc----CCCCCCCccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIP--STLGVLGTKR----LPYPSRSFELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~----~~~--~~~~~~d~~~----lp~~~~sFDlI~~~ 115 (444)
-+|||.=|++|.-+...+..---..++...|.++..+...+++ +.. +.....|+.. .+-.+..||+|..
T Consensus 111 l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL- 189 (525)
T KOG1253|consen 111 LRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL- 189 (525)
T ss_pred chHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEec-
Confidence 4799999999987776665311122444445555554433332 111 1122333222 2334578999984
Q ss_pred cccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 116 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 116 ~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
=+| -....+|..+.+.++.||.+.++...
T Consensus 190 ---DPy-Gs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 190 ---DPY-GSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ---CCC-CCccHHHHHHHHHhhcCCEEEEEecc
Confidence 233 34467999999999999999997644
No 432
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=47.96 E-value=1e+02 Score=28.49 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=33.1
Q ss_pred CCCCccEEEeccccccc-----------cccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 105 PSRSFELAHCSRCRIDW-----------LQRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 105 ~~~sFDlI~~~~~~l~~-----------~~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
..+..|+||.+.|+-.. .++.++++..+..+|+|+..+++.+..+
T Consensus 47 ~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 47 EGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred cCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 35678999998764332 2345678888889999999999876444
No 433
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=47.76 E-value=16 Score=33.99 Aligned_cols=118 Identities=15% Similarity=0.235 Sum_probs=74.2
Q ss_pred eeEEEecccccchhhhhccC-CCceEEEeccccCC-----CchhHHhhccccccccccccCCCCC-----Ccccchhhcc
Q 013393 289 FRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-----ARLKIIYDRGLIGTVHDWCESFSTY-----PRTYDLLHAW 357 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~~-----~~l~~~~~rg~~~~~~~~~~~~~~y-----~~~~dl~h~~ 357 (444)
-.-++|+.+|.|.|.+++.. .|- .|++=++-. ..+.-+..+||=.+.-=.|.+.... |.+.|-+|-
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i- 94 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI- 94 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE-
Confidence 34899999999999999852 232 355555432 3444677778866555555554421 345555543
Q ss_pred cccccc------ccCCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHHHhhc--ccee
Q 013393 358 KVFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITAL--KWDG 410 (444)
Q Consensus 358 ~~~~~~------~~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~~~~~--~w~~ 410 (444)
.|.+- .++|=--...|-++-|+|+|||.+-++ |..+..+.+.+.+... .++.
T Consensus 95 -~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~ 155 (195)
T PF02390_consen 95 -NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFEN 155 (195)
T ss_dssp -ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEE
T ss_pred -eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEE
Confidence 23321 234545567778999999999999774 8888888888888875 4444
No 434
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=47.56 E-value=72 Score=32.07 Aligned_cols=90 Identities=10% Similarity=0.067 Sum_probs=50.8
Q ss_pred eEEEECC--CcchHHHHHhhCCceEEEcCcccchHHHHHHHH-HcCCCcEEEEe---cCcc-C-CCCCCCccEEEecccc
Q 013393 47 NVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVL---GTKR-L-PYPSRSFELAHCSRCR 118 (444)
Q Consensus 47 rVLDVGC--GtG~~a~~La~~~V~gvdis~~dis~a~i~~a~-e~~~~~~~~~~---d~~~-l-p~~~~sFDlI~~~~~~ 118 (444)
+||=.|+ |.|.++..+++.. |..+...+.++...+.++ +.|....+... +... + ....+.+|+|+-..
T Consensus 161 ~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v-- 236 (348)
T PLN03154 161 SVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNV-- 236 (348)
T ss_pred EEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECC--
Confidence 8988988 3677887787742 222222334455555555 45543322211 1100 0 01124689887432
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
- ...+.++.+.|++||.+++..
T Consensus 237 G------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 237 G------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred C------HHHHHHHHHHhccCCEEEEEC
Confidence 1 246788899999999999754
No 435
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=46.89 E-value=36 Score=31.95 Aligned_cols=135 Identities=16% Similarity=0.247 Sum_probs=68.2
Q ss_pred ccCCceeEEEecccccchhhhhccC-----CCceEEEeccccCCCchhHHhhcccc---ccc-cccccCCCCC-----Cc
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKD-----KDVWVMNVAPVRMSARLKIIYDRGLI---GTV-HDWCESFSTY-----PR 349 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~-----~~~wv~~~~~~~~~~~l~~~~~rg~~---~~~-~~~~~~~~~y-----~~ 349 (444)
++..+-++|+.+...+|=-|..|.. -.++..-.-|....---..+-.-|+- =+. -|..|.+++. +.
T Consensus 41 ~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 41 VRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred HHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 3445577999998887755544431 12333332222111111123334541 121 2444444432 46
Q ss_pred ccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH----------------HHHHHHHHHHhhccceeEEe
Q 013393 350 TYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS----------------SIINYIRKFITALKWDGWLS 413 (444)
Q Consensus 350 ~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~----------------~~~~~~~~~~~~~~w~~~~~ 413 (444)
+||+|=.++= +. +....+-..=+.|||||.+|+.|.. .+-+-.+.|.+-=+.++...
T Consensus 121 ~fD~VFiDa~-----K~--~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~ll 193 (205)
T PF01596_consen 121 QFDFVFIDAD-----KR--NYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLL 193 (205)
T ss_dssp SEEEEEEEST-----GG--GHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEE
T ss_pred ceeEEEEccc-----cc--chhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEE
Confidence 8999766552 21 2333333444899999999995322 22233344444456666543
Q ss_pred ccccccCCCCCCCceEEEEEec
Q 013393 414 EVEPRIDALSSSEERVLIAKKK 435 (444)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~k~ 435 (444)
|. .+.|++++|+
T Consensus 194 -------pi---gdGl~l~~K~ 205 (205)
T PF01596_consen 194 -------PI---GDGLTLARKR 205 (205)
T ss_dssp -------CS---TTEEEEEEE-
T ss_pred -------Ee---CCeeEEEEEC
Confidence 22 4789999985
No 436
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=46.25 E-value=50 Score=33.46 Aligned_cols=88 Identities=20% Similarity=0.206 Sum_probs=49.5
Q ss_pred eEEEECCC-cchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecC---ccC-CCCCCCccEEEeccc
Q 013393 47 NVLDVGCG-VASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT---KRL-PYPSRSFELAHCSRC 117 (444)
Q Consensus 47 rVLDVGCG-tG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~---~~l-p~~~~sFDlI~~~~~ 117 (444)
+||=.|+| .|.++..+++. .|+++ +.++...+.+++.+....+...+. +.+ ....+.+|+|+-..
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G~~~Vi~~-----~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~- 267 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAGASQVVAV-----DLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA- 267 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCcEEEE-----cCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC-
Confidence 67778875 24555556653 23443 445666677776665332221110 000 01123689887432
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
- ....+....+.|++||.+++..
T Consensus 268 -G-----~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 268 -G-----SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred -C-----ChHHHHHHHHHHhcCCEEEEEc
Confidence 1 1246778889999999998754
No 437
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=45.45 E-value=40 Score=36.87 Aligned_cols=58 Identities=16% Similarity=0.313 Sum_probs=40.8
Q ss_pred CCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
+..+|| +-||+|.-+..+++. ...+..++++.++.+...+..+.+-....+|+|+++.
T Consensus 505 k~mKIL-vaCGsGiGTStmva~--------------kIkk~Lke~GI~veV~~~~Vsev~s~~~~aDIIVtt~ 562 (602)
T PRK09548 505 KPVRIL-AVCGQGQGSSMMMKM--------------KIKKYLDKRGIPIIMDSCAVNDYKGKLETIDIIVCSK 562 (602)
T ss_pred cccEEE-EECCCCchHHHHHHH--------------HHHHHHHHcCCCeEEEEechHhCcccCCCCCEEEEcc
Confidence 444677 669999766666543 2224667778888888888877775556799999875
No 438
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=44.75 E-value=45 Score=23.92 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCeEEEeeecceeEeeccCch
Q 013393 160 WNAMYDLLKSMCWKIVSKKDQTVIWAKPISN 190 (444)
Q Consensus 160 ~~~l~~l~~~~gf~~v~~~~~~~~w~k~l~~ 190 (444)
|+++..++++.||......+.-.+|.++...
T Consensus 1 ~~el~k~L~~~G~~~~r~~GSH~~~~~~~~~ 31 (56)
T PF07927_consen 1 WRELIKLLEKAGFEEVRQKGSHHIFRHPGGR 31 (56)
T ss_dssp -HHHHHHHHHTT-EEEEEETTEEEEE-TTS-
T ss_pred ChHHHHHHHHCCCEEecCCCCEEEEEeCCCC
Confidence 6789999999999998777778888877543
No 439
>PF14881 Tubulin_3: Tubulin domain
Probab=44.47 E-value=35 Score=31.38 Aligned_cols=33 Identities=30% Similarity=0.641 Sum_probs=25.6
Q ss_pred ceeEEEecccccchhhhhcc--------CCCc-eEEEecccc
Q 013393 288 TFRNVMDMNSNLGGFAAALK--------DKDV-WVMNVAPVR 320 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~--------~~~~-wv~~~~~~~ 320 (444)
-++-+.|+.-++||||+.+. ++++ |+-++-+..
T Consensus 76 GfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~ 117 (180)
T PF14881_consen 76 GFQVLTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGLRDPS 117 (180)
T ss_pred ceEEEecCCCchHhHHHHHHHHHHHHcCCCceEEeecCCCcc
Confidence 46789999999999999996 4464 887765443
No 440
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=44.11 E-value=61 Score=26.16 Aligned_cols=94 Identities=23% Similarity=0.312 Sum_probs=55.0
Q ss_pred EEecccccch--hhhhccCCCceEEEeccccCC-CchhHHhh----ccc---ccccccccc-CCCCCC-cccchhhcccc
Q 013393 292 VMDMNSNLGG--FAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL---IGTVHDWCE-SFSTYP-RTYDLLHAWKV 359 (444)
Q Consensus 292 vmDm~a~~G~--f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~----rg~---~~~~~~~~~-~~~~y~-~~~dl~h~~~~ 359 (444)
+.|...+.|- +.+.+......+.. ++.. ..+...-. .++ -....+... .++.-+ .++|++ ....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 55666554433333 2221 12222111 111 223334443 244333 489998 6554
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEeccH
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 393 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~ 393 (444)
.... .....++-++-|+|+|+|.+++.+..
T Consensus 128 ~~~~----~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHL----LPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhc----CCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 4411 11789999999999999999997665
No 441
>PTZ00357 methyltransferase; Provisional
Probab=44.09 E-value=1.3e+02 Score=33.76 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=56.0
Q ss_pred eEEEECCCcchHHHHHhhC--------CceEEEcCcccchHHHHHHHH---Hc------CCCcEEEEecCccCCCCC---
Q 013393 47 NVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFAL---ER------GIPSTLGVLGTKRLPYPS--- 106 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--------~V~gvdis~~dis~a~i~~a~---e~------~~~~~~~~~d~~~lp~~~--- 106 (444)
.|+=+|+|-|-+....+++ .+++++-.+....-...+... .. +..+.++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999665544431 455666554322111212111 11 234678888887764321
Q ss_pred --------CCccEEEeccccccccccH--HHHHHHHHhhcCC----CeEE
Q 013393 107 --------RSFELAHCSRCRIDWLQRD--GILLLELDRLLRP----GGYF 142 (444)
Q Consensus 107 --------~sFDlI~~~~~~l~~~~d~--~~~L~ei~rvLkP----GG~l 142 (444)
+.+|+|++-. +..+-.+. .+.|.-+.+.||+ +|.+
T Consensus 783 s~~~P~~~gKaDIVVSEL-LGSFGDNELSPECLDGaQrfLKdiqhsdGIl 831 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSEL-LGSLGDNELSPECLEAFHAQLEDIQLSRGIA 831 (1072)
T ss_pred cccccccccccceehHhh-hcccccccCCHHHHHHHHHhhhhhccccccc
Confidence 3799999643 45553333 3788888888887 7763
No 442
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=43.73 E-value=13 Score=35.18 Aligned_cols=95 Identities=13% Similarity=0.104 Sum_probs=55.5
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-Cchh-HHhhccccccc--------------cccccCCCCC---C-c
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLK-IIYDRGLIGTV--------------HDWCESFSTY---P-R 349 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~-~~~~rg~~~~~--------------~~~~~~~~~y---~-~ 349 (444)
..|+|.-.|-|--|..|.++.. +|+-++-. .-+. ..-++|+-... +-+|.-|..+ + -
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 3799999999999999987643 45555532 2222 23456653221 1122212111 1 2
Q ss_pred ccchhhccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 350 TYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 350 ~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
+||++-...+|..+. ...-..++-.|.++|+|||.+++
T Consensus 116 ~fd~v~D~~~~~~l~--~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALP--EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCC--HHHHHHHHHHHHHHcCCCCeEEE
Confidence 566666566555332 12346788999999999996544
No 443
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=42.68 E-value=63 Score=31.40 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=43.0
Q ss_pred CCChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhccceeEEe
Q 013393 367 GCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLS 413 (444)
Q Consensus 367 ~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~~~~ 413 (444)
.|++++++-=-=++|+|+|.+.+==.++-+.++-.++++++|+....
T Consensus 146 ~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 146 TLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred cCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEE
Confidence 58999999999999999999999888999999999999999998743
No 444
>PRK11524 putative methyltransferase; Provisional
Probab=42.60 E-value=36 Score=33.46 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=24.7
Q ss_pred eEEEECCCcchHHHHHhh--CCceEEEcCcccc
Q 013393 47 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDV 77 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~--~~V~gvdis~~di 77 (444)
.|||-=||+|+.+....+ ++.+|+|+++.-.
T Consensus 211 ~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~ 243 (284)
T PRK11524 211 IVLDPFAGSFTTGAVAKASGRKFIGIEINSEYI 243 (284)
T ss_pred EEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHH
Confidence 899999999987765544 6899998887544
No 445
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=42.53 E-value=34 Score=35.29 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=22.1
Q ss_pred CCCCeEEEECCCcchHHHHHhhC---CceEEEcC
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLA 73 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis 73 (444)
.....|.|+|.|.|.++..+.=. .|.++|-+
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegs 185 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGS 185 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccc
Confidence 34458999999999999988643 44454433
No 446
>KOG1393 consensus Hydroxymethylglutaryl-CoA synthase [Lipid transport and metabolism]
Probab=42.31 E-value=13 Score=38.19 Aligned_cols=69 Identities=23% Similarity=0.334 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhhhccCCceeEEEecccccchhhhhcc-----CCCce----E------------EEeccccCCC------
Q 013393 271 VRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK-----DKDVW----V------------MNVAPVRMSA------ 323 (444)
Q Consensus 271 ~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~-----~~~~w----v------------~~~~~~~~~~------ 323 (444)
+.|..++..|-++-+|..|--+=-.||.|||-||-+. +...| - -|+=|+.+..
T Consensus 97 KSVKt~LMqLF~~sgNtdIEGiDttnACYGGtaALfnavnWiESssWDGr~aivV~gDIAvY~~G~aRpTGGAgAVAmLI 176 (462)
T KOG1393|consen 97 KSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAALFNAVNWIESSSWDGRYAIVVCGDIAVYAKGNARPTGGAGAVAMLI 176 (462)
T ss_pred hHHHHHHHHHhhhcCCCccccccccccccccHHHHHHHhhhhhhcccCCceeEEEEeeEEEecCCCCCCCCCcceEEEEE
Confidence 3455556666567788999999999999999888763 44456 1 1222333221
Q ss_pred --chhHHhhccccccccc
Q 013393 324 --RLKIIYDRGLIGTVHD 339 (444)
Q Consensus 324 --~l~~~~~rg~~~~~~~ 339 (444)
+-|+|+||||-|+|+.
T Consensus 177 gPnApi~ferglr~thM~ 194 (462)
T KOG1393|consen 177 GPNAPIIFERGLRATHMQ 194 (462)
T ss_pred cCCCceEecccchhhhhh
Confidence 2347999999999975
No 447
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=42.23 E-value=1e+02 Score=30.38 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=51.4
Q ss_pred CCCCCCCCCeEEEECCCc-chHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecC---ccC--CCCCCCccE
Q 013393 38 KLNNGGNIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT---KRL--PYPSRSFEL 111 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGt-G~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~---~~l--p~~~~sFDl 111 (444)
.+.++. +||-.|+|. |..+..+++.. +..+.....++...+..++.+....+...+. ..+ ..+.+.+|+
T Consensus 156 ~l~~g~---~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~ 230 (337)
T cd08261 156 GVTAGD---TVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADV 230 (337)
T ss_pred CCCCCC---EEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCE
Confidence 444544 789998763 56666666641 1122222223445555555553221111100 001 013356899
Q ss_pred EEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 112 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 112 I~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
++.... ....+.++.+.|+++|.++...
T Consensus 231 vld~~g-------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 231 VIDATG-------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred EEECCC-------CHHHHHHHHHHHhcCCEEEEEc
Confidence 985421 1346788899999999988643
No 448
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=41.35 E-value=38 Score=31.11 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=21.9
Q ss_pred eEEEECCCcchHHHHHhh--CCceEEEcCcc
Q 013393 47 NVLDVGCGVASFGAYLLS--HDIIAMSLAPN 75 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~--~~V~gvdis~~ 75 (444)
.|||-=||+|+.+.+..+ +..+|+|+++.
T Consensus 194 iVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~ 224 (231)
T PF01555_consen 194 IVLDPFAGSGTTAVAAEELGRRYIGIEIDEE 224 (231)
T ss_dssp EEEETT-TTTHHHHHHHHTT-EEEEEESSHH
T ss_pred eeehhhhccChHHHHHHHcCCeEEEEeCCHH
Confidence 899999999987776655 56888887764
No 449
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.28 E-value=81 Score=27.08 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=49.0
Q ss_pred eEEEECCCcc-hHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC-CCCccEEEecccccccccc
Q 013393 47 NVLDVGCGVA-SFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQR 124 (444)
Q Consensus 47 rVLDVGCGtG-~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~-~~sFDlI~~~~~~l~~~~d 124 (444)
+|.+||-|-= ..+..|+++ |+|+..+|+.+. .| +..+++.+.|...-... -+..|+|++.++ .++
T Consensus 16 kVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~---~a---~~g~~~v~DDitnP~~~iY~~A~lIYSiRp----ppE 82 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAER---GFDVLATDINEK---TA---PEGLRFVVDDITNPNISIYEGADLIYSIRP----PPE 82 (129)
T ss_pred cEEEEccchHHHHHHHHHHc---CCcEEEEecccc---cC---cccceEEEccCCCccHHHhhCccceeecCC----CHH
Confidence 7999998865 456667766 344444454333 11 23456666665442211 135799998775 355
Q ss_pred HHHHHHHHHhhcCCCeEE
Q 013393 125 DGILLLELDRLLRPGGYF 142 (444)
Q Consensus 125 ~~~~L~ei~rvLkPGG~l 142 (444)
....+-++.+.++-.-++
T Consensus 83 l~~~ildva~aVga~l~I 100 (129)
T COG1255 83 LQSAILDVAKAVGAPLYI 100 (129)
T ss_pred HHHHHHHHHHhhCCCEEE
Confidence 567777777766654433
No 450
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=41.23 E-value=74 Score=31.48 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=47.9
Q ss_pred eEEEECCC-cchHHHHHhhC---C-ceEEEcCcccchHHHHHHHHHcCCCcEEEEecC--ccC-CC-CCCCccEEEeccc
Q 013393 47 NVLDVGCG-VASFGAYLLSH---D-IIAMSLAPNDVHENQIQFALERGIPSTLGVLGT--KRL-PY-PSRSFELAHCSRC 117 (444)
Q Consensus 47 rVLDVGCG-tG~~a~~La~~---~-V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~--~~l-p~-~~~sFDlI~~~~~ 117 (444)
+||=+|+| .|.++..+++. . |+++ +.++...+.+++.+....+...+. ..+ .. ..+.||+|+-...
T Consensus 166 ~vlV~G~G~vG~~~~~~ak~~G~~~vi~~-----~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g 240 (339)
T cd08239 166 TVLVVGAGPVGLGALMLARALGAEDVIGV-----DPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG 240 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEE-----CCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC
Confidence 78778875 23444455553 2 3333 344566677776665322211110 011 11 2346999884321
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
....+.+..+.|+++|.+++..
T Consensus 241 -------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 241 -------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1235677788999999998754
No 451
>PRK13699 putative methylase; Provisional
Probab=41.07 E-value=47 Score=31.64 Aligned_cols=31 Identities=26% Similarity=0.140 Sum_probs=25.2
Q ss_pred eEEEECCCcchHHHHHhh--CCceEEEcCcccc
Q 013393 47 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDV 77 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~--~~V~gvdis~~di 77 (444)
.|||-=||+|+.+....+ +..+|+++++.-.
T Consensus 166 ~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~ 198 (227)
T PRK13699 166 IVLDPFAGSGSTCVAALQSGRRYIGIELLEQYH 198 (227)
T ss_pred EEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHH
Confidence 899999999988776654 6888999987544
No 452
>PRK00536 speE spermidine synthase; Provisional
Probab=40.16 E-value=23 Score=34.68 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=27.3
Q ss_pred CcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH
Q 013393 348 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 393 (444)
Q Consensus 348 ~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~ 393 (444)
+.+||+|=.+.+|+. ++ .-.+-|+|+|+|.++.+-..
T Consensus 137 ~~~fDVIIvDs~~~~--------~f-y~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 137 IKKYDLIICLQEPDI--------HK-IDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred CCcCCEEEEcCCCCh--------HH-HHHHHHhcCCCcEEEECCCC
Confidence 467999988888772 11 13468999999999997543
No 453
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=39.90 E-value=89 Score=30.82 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=46.6
Q ss_pred CeEEEECCC-cchHHHHHhhC-C---ceEEEcCcccchHHHHHHHHHcCCCcEEEEecC------ccCCCCCCCccEEEe
Q 013393 46 RNVLDVGCG-VASFGAYLLSH-D---IIAMSLAPNDVHENQIQFALERGIPSTLGVLGT------KRLPYPSRSFELAHC 114 (444)
Q Consensus 46 ~rVLDVGCG-tG~~a~~La~~-~---V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~------~~lp~~~~sFDlI~~ 114 (444)
.+||-.|+| .|..+..++++ + ++++ +.+....+.+++.+....+...+. ..+ .+.+.+|+|+-
T Consensus 169 ~~VlI~g~g~vg~~~iqlak~~g~~~v~~~-----~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~vld 242 (347)
T cd05278 169 STVAVIGAGPVGLCAVAGARLLGAARIIAV-----DSNPERLDLAKEAGATDIINPKNGDIVEQILEL-TGGRGVDCVIE 242 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEE-----eCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHH-cCCCCCcEEEE
Confidence 378887765 35555556653 2 2333 223344445554442211111100 011 12356998884
Q ss_pred ccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 115 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 115 ~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
... ....+.++.+.|+++|.++...
T Consensus 243 ~~g-------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 243 AVG-------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred ccC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 321 1247888899999999998643
No 454
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=39.59 E-value=80 Score=30.51 Aligned_cols=88 Identities=22% Similarity=0.160 Sum_probs=49.8
Q ss_pred CeEEEECCC-cchHHHHHhhC---C-ceEEEcCcccchHHHHHHHHHcCCCcEEEEecC----ccCCCCCCCccEEEecc
Q 013393 46 RNVLDVGCG-VASFGAYLLSH---D-IIAMSLAPNDVHENQIQFALERGIPSTLGVLGT----KRLPYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCG-tG~~a~~La~~---~-V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~----~~lp~~~~sFDlI~~~~ 116 (444)
.+||=.|+| .|..+..+++. . |+++ +.++...+.+++.+....+...+. ..+. ....+|+|+-..
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~-----~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~-~~~g~d~vid~~ 195 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAA-----DPSPDRRELALSFGATALAEPEVLAERQGGLQ-NGRGVDVALEFS 195 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEE-----CCCHHHHHHHHHcCCcEecCchhhHHHHHHHh-CCCCCCEEEECC
Confidence 378888875 34455555553 2 4443 344556667777665332211110 0111 224589887432
Q ss_pred ccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 117 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 117 ~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
- ....+.++.+.|+|+|.+++..
T Consensus 196 --G-----~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 196 --G-----ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred --C-----ChHHHHHHHHHhcCCCEEEEec
Confidence 1 1347888899999999999754
No 455
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=39.57 E-value=44 Score=32.73 Aligned_cols=111 Identities=17% Similarity=0.154 Sum_probs=67.7
Q ss_pred eEEEecccccchhhhhccCCCceE-----EEecccc-CCCchhHHhhcccc-ccccc----c-c---cCCCCCCcccchh
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWV-----MNVAPVR-MSARLKIIYDRGLI-GTVHD----W-C---ESFSTYPRTYDLL 354 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv-----~~~~~~~-~~~~l~~~~~rg~~-~~~~~----~-~---~~~~~y~~~~dl~ 354 (444)
-+++||.-+-|--|=.+.+.--=. -+|+-.| +|+.|.+--.|-.= |.+-+ | | |.+|+=..+||..
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~y 181 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAY 181 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeE
Confidence 689999999987776664321000 3455555 46889886666532 22222 3 2 4455445999986
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCcEEEEeccHHHH-HHHHHHHh
Q 013393 355 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSII-NYIRKFIT 404 (444)
Q Consensus 355 h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~~~-~~~~~~~~ 404 (444)
-... + +. +--.+.-.|-|+-|+|.|||.+.+=+-..+= +.++.+..
T Consensus 182 Tiaf--G-IR-N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~ 228 (296)
T KOG1540|consen 182 TIAF--G-IR-NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYD 228 (296)
T ss_pred EEec--c-ee-cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHH
Confidence 5432 2 11 1224788999999999999998776555443 34444443
No 456
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=39.31 E-value=94 Score=31.42 Aligned_cols=90 Identities=13% Similarity=0.080 Sum_probs=45.9
Q ss_pred CeEEEECCC-cchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCG-VASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCG-tG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
++||=.|+| .|.++..+++. .+++++.+.. .....+++.|....+...+...+.-..+.+|+|+-.. -
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~----~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~--g-- 256 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSN----KEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV--S-- 256 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc----hhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC--C--
Confidence 377778886 35565666653 3444443321 1222344445422221111101110012488887432 1
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
....+.+..+.|++||.++...
T Consensus 257 ---~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 257 ---AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred ---CHHHHHHHHHHhcCCcEEEEeC
Confidence 1236788899999999999754
No 457
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=39.24 E-value=15 Score=35.38 Aligned_cols=101 Identities=22% Similarity=0.285 Sum_probs=76.5
Q ss_pred hccCCceeEEEecccccchhhhhccCCCceEEEecccc-CCCchhHHhhccccc-cccccccCCC--CCCcccchhhccc
Q 013393 283 VAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVR-MSARLKIIYDRGLIG-TVHDWCESFS--TYPRTYDLLHAWK 358 (444)
Q Consensus 283 ~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~-~~~~l~~~~~rg~~~-~~~~~~~~~~--~y~~~~dl~h~~~ 358 (444)
..+.+.++-++|...+-|=++-+|.+.- --..=++ +.|-|-..+++|+-- .||-=-..|. +=++-+|||-|.-
T Consensus 120 ~~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD 196 (287)
T COG4976 120 KADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD 196 (287)
T ss_pred hccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh
Confidence 4566679999999999999999998721 1223334 348888999999732 2333333465 5689999999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
+|+-+ -+++.++.=.++.|.|||.+++.
T Consensus 197 Vl~Yl----G~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 197 VLPYL----GALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred HHHhh----cchhhHHHHHHHhcCCCceEEEE
Confidence 99932 36999999999999999999984
No 458
>PLN02366 spermidine synthase
Probab=38.85 E-value=27 Score=35.07 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=54.7
Q ss_pred cCCceeEEEecccccchhhhhccCCCceEEEeccccCC--------CchhHHhhccc----cccc-cccccCCCCC-Ccc
Q 013393 285 QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS--------ARLKIIYDRGL----IGTV-HDWCESFSTY-PRT 350 (444)
Q Consensus 285 ~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~--------~~l~~~~~rg~----~~~~-~~~~~~~~~y-~~~ 350 (444)
..++-++|+++..|-|+.+..+.+.|- |.+|+=++-. ..++-+ ..|+ +-+. .|=-+-.... +++
T Consensus 88 ~~~~pkrVLiIGgG~G~~~rellk~~~-v~~V~~VEiD~~Vi~~ar~~f~~~-~~~~~dpRv~vi~~Da~~~l~~~~~~~ 165 (308)
T PLN02366 88 SIPNPKKVLVVGGGDGGVLREIARHSS-VEQIDICEIDKMVIDVSKKFFPDL-AVGFDDPRVNLHIGDGVEFLKNAPEGT 165 (308)
T ss_pred hCCCCCeEEEEcCCccHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhhhhh-ccccCCCceEEEEChHHHHHhhccCCC
Confidence 345578999999999999988877641 2333322211 122211 0111 1111 1110011223 478
Q ss_pred cchhhcccccccccc-CCCChhhhhhhhcccccCCcEEEEe
Q 013393 351 YDLLHAWKVFSEIEE-RGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 351 ~dl~h~~~~~~~~~~-~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
||+|-.+. +..... ..---...+-.+-|.|+|||.++++
T Consensus 166 yDvIi~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 166 YDAIIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCEEEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 99997654 221110 0000134567889999999999874
No 459
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=38.79 E-value=78 Score=25.74 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=45.3
Q ss_pred ECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHH
Q 013393 51 VGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLL 130 (444)
Q Consensus 51 VGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ 130 (444)
+-||+|.-+..+++ ...+.+.+++.++.+...+..+..-....+|+|+++. .....+.
T Consensus 4 ~~Cg~G~sTS~~~~---------------ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~P-------qv~~~~~ 61 (96)
T cd05564 4 LVCSAGMSTSILVK---------------KMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGP-------QVRYMLD 61 (96)
T ss_pred EEcCCCchHHHHHH---------------HHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEECh-------hHHHHHH
Confidence 44888866555543 2235677778888777777555432235699998753 2233555
Q ss_pred HHHhhcC-CCeEEEEEcCCCC
Q 013393 131 ELDRLLR-PGGYFVYSSPEAY 150 (444)
Q Consensus 131 ei~rvLk-PGG~lvis~p~~~ 150 (444)
++.+.+. .+--+....+..|
T Consensus 62 ~i~~~~~~~~~pv~~I~~~~Y 82 (96)
T cd05564 62 EVKKKAAEYGIPVAVIDMMDY 82 (96)
T ss_pred HHHHHhccCCCcEEEcChHhc
Confidence 6665443 3444555544444
No 460
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=38.64 E-value=75 Score=31.27 Aligned_cols=81 Identities=23% Similarity=0.190 Sum_probs=46.0
Q ss_pred CeEEEECCC-cchHHHHHhhC---C-ceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCG-VASFGAYLLSH---D-IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCG-tG~~a~~La~~---~-V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
++||=+||| .|.++..+++. . +.++ +..+..++.+.... ..+.... ....||+|+-.. -
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~-----~~~~~rl~~a~~~~------~i~~~~~--~~~g~Dvvid~~--G- 209 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVW-----ETNPRRRDGATGYE------VLDPEKD--PRRDYRAIYDAS--G- 209 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEe-----CCCHHHHHhhhhcc------ccChhhc--cCCCCCEEEECC--C-
Confidence 368888886 46676767663 2 2233 22334444443321 1121111 234689888543 1
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
....+.++.+.|++||.+++..
T Consensus 210 ----~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 210 ----DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ----CHHHHHHHHHhhhcCcEEEEEe
Confidence 1246788899999999999754
No 461
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=37.80 E-value=50 Score=31.56 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=22.0
Q ss_pred CCCCeEEEECCCcchHHHHHh--h----CCceEEEcCcccch
Q 013393 43 GNIRNVLDVGCGVASFGAYLL--S----HDIIAMSLAPNDVH 78 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La--~----~~V~gvdis~~dis 78 (444)
+.+-++-|-.||.|.+..-+. . ++|++.||++..+.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~ 91 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALE 91 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHH
Confidence 445589999999997654442 2 36778887765543
No 462
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=37.11 E-value=25 Score=34.89 Aligned_cols=43 Identities=16% Similarity=0.435 Sum_probs=35.6
Q ss_pred CChhhhhh-hhcccccCCcEEEEe-----------ccHHHHHHHHHHHhhcccee
Q 013393 368 CSFEDLLI-EMDRMLRPEGFVIIR-----------DKSSIINYIRKFITALKWDG 410 (444)
Q Consensus 368 c~~~~~~~-e~drilrp~g~~~~r-----------d~~~~~~~~~~~~~~~~w~~ 410 (444)
|++...|- |+.++++|+|.+|+. ....+.++|+++|+.-.|+.
T Consensus 230 ~s~vh~L~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p 284 (289)
T PF14740_consen 230 CSMVHFLKPELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKP 284 (289)
T ss_pred hhhHhhcchHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcc
Confidence 66666666 799999999999995 34567899999999998885
No 463
>PLN02476 O-methyltransferase
Probab=36.64 E-value=76 Score=31.36 Aligned_cols=133 Identities=12% Similarity=0.107 Sum_probs=69.1
Q ss_pred ccCCceeEEEecccccchhhhhccCC-CceEEEeccccCC-Cchh----HHhhccccc---c-ccccccCCCC-----CC
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLK----IIYDRGLIG---T-VHDWCESFST-----YP 348 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~----~~~~rg~~~---~-~~~~~~~~~~-----y~ 348 (444)
++..+-++++++....|..|.+|..- |-- --|+-.+.. ..+. .+-.-|+-. + .-|-.|.++. .+
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~-G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPES-GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccC
Confidence 34455789999999999988877531 100 012222221 1121 233334310 0 0122222222 24
Q ss_pred cccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEecc-------------HHHHHHHHH----HHhhccceeE
Q 013393 349 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-------------SSIINYIRK----FITALKWDGW 411 (444)
Q Consensus 349 ~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~-------------~~~~~~~~~----~~~~~~w~~~ 411 (444)
.+||++=.+. .+ =+...++-..=+.|||||.+++.|. .. ...+++ +...=++++.
T Consensus 193 ~~FD~VFIDa-----~K--~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~-t~~ir~fn~~v~~d~~~~~~ 264 (278)
T PLN02476 193 SSYDFAFVDA-----DK--RMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAK-TISIRNFNKKLMDDKRVSIS 264 (278)
T ss_pred CCCCEEEECC-----CH--HHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHH-HHHHHHHHHHHhhCCCEEEE
Confidence 5788865554 22 1355555555689999999998421 11 113333 3444557765
Q ss_pred EeccccccCCCCCCCceEEEEEec
Q 013393 412 LSEVEPRIDALSSSEERVLIAKKK 435 (444)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~k~ 435 (444)
.. |. .+.+++++|+
T Consensus 265 ll-------Pi---gDGl~i~~K~ 278 (278)
T PLN02476 265 MV-------PI---GDGMTICRKR 278 (278)
T ss_pred EE-------Ee---CCeeEEEEEC
Confidence 43 22 4779999885
No 464
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=36.52 E-value=67 Score=26.79 Aligned_cols=81 Identities=14% Similarity=0.237 Sum_probs=48.0
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCC--CCCCccEEEecccccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY--PSRSFELAHCSRCRIDWLQR 124 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~--~~~sFDlI~~~~~~l~~~~d 124 (444)
+|| +-||+|.-+..++++ +.+.++++|.++.+...+..+++. ....||+|++.. .
T Consensus 3 kIL-lvCg~G~STSlla~k---------------~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P-------Q 59 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK---------------TTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSP-------Q 59 (104)
T ss_pred EEE-EECCCchHHHHHHHH---------------HHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEECh-------H
Confidence 466 569999766655542 235677788888777676555432 234689998653 2
Q ss_pred HHHHHHHHHhhcCCCeE-EEEEcCCCC
Q 013393 125 DGILLLELDRLLRPGGY-FVYSSPEAY 150 (444)
Q Consensus 125 ~~~~L~ei~rvLkPGG~-lvis~p~~~ 150 (444)
..-.+.++...+.+-|. +.+..+..|
T Consensus 60 i~~~~~~i~~~~~~~~ipv~~I~~~~Y 86 (104)
T PRK09590 60 TKMYFKQFEEAGAKVGKPVVQIPPQAY 86 (104)
T ss_pred HHHHHHHHHHHhhhcCCCEEEeCHHHc
Confidence 23345566666655444 445444444
No 465
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=36.16 E-value=40 Score=32.73 Aligned_cols=98 Identities=16% Similarity=0.251 Sum_probs=51.7
Q ss_pred eEEEecccccchhhhhccC---CCceEEEeccccCC-CchhHHh----hccc--cccccccccCCCCCCcccchhhcc--
Q 013393 290 RNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRMS-ARLKIIY----DRGL--IGTVHDWCESFSTYPRTYDLLHAW-- 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~---~~~wv~~~~~~~~~-~~l~~~~----~rg~--~~~~~~~~~~~~~y~~~~dl~h~~-- 357 (444)
..|+||.++-||++..|.. ..- .|+-++.. .-|..+- ..|+ +-+++.=...++.....||.|=.+
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 4699999999999866543 111 24444432 3333222 2243 222222222333333458887543
Q ss_pred ----cccccccc--CCC----------ChhhhhhhhcccccCCcEEEEe
Q 013393 358 ----KVFSEIEE--RGC----------SFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 358 ----~~~~~~~~--~~c----------~~~~~~~e~drilrp~g~~~~r 390 (444)
|++..... .+- .-..||-+.=++|||||.+++.
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 23321000 000 1235888888999999999984
No 466
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=36.00 E-value=1.1e+02 Score=30.68 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=48.1
Q ss_pred CeEEEECCCc-chHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecC--ccC----C-C-CCCCcc----EE
Q 013393 46 RNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT--KRL----P-Y-PSRSFE----LA 112 (444)
Q Consensus 46 ~rVLDVGCGt-G~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~--~~l----p-~-~~~sFD----lI 112 (444)
.+||=.|||. |..+..+++.. +..+...+.++...+++++.+....+...+. ..+ . + ....+| .|
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v 245 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI 245 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence 3899999854 55555555531 1122223445566677776665332211110 000 0 1 112354 44
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 113 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 113 ~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
+- |. .....+..+.+.|++||.+++...
T Consensus 246 ~d--~~-----g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 246 FE--CS-----GSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred EE--CC-----CChHHHHHHHHHHhcCCeEEEECc
Confidence 42 11 112467778889999999998653
No 467
>PLN02740 Alcohol dehydrogenase-like
Probab=35.90 E-value=1e+02 Score=31.26 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=51.4
Q ss_pred CCCCCCCCCeEEEECCC-cchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCc-cC-----CCCC
Q 013393 38 KLNNGGNIRNVLDVGCG-VASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-RL-----PYPS 106 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCG-tG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~-~l-----p~~~ 106 (444)
.+++++ +||=+||| .|..+..+++. .|+++ +.++...+.+++.+....+...+.. .+ ....
T Consensus 195 ~~~~g~---~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~-----~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 195 NVQAGS---SVAIFGLGAVGLAVAEGARARGASKIIGV-----DINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTG 266 (381)
T ss_pred CCCCCC---EEEEECCCHHHHHHHHHHHHCCCCcEEEE-----cCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhC
Confidence 344444 78888875 24455555552 24444 4445666777776654322211100 00 0112
Q ss_pred CCccEEEeccccccccccHHHHHHHHHhhcCCC-eEEEEEc
Q 013393 107 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPG-GYFVYSS 146 (444)
Q Consensus 107 ~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPG-G~lvis~ 146 (444)
+.||+|+-... ....+.+..+.+++| |.+++..
T Consensus 267 ~g~dvvid~~G-------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 267 GGVDYSFECAG-------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCCEEEECCC-------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 36998875331 124677888899997 9888754
No 468
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=35.85 E-value=1.9e+02 Score=26.85 Aligned_cols=137 Identities=13% Similarity=0.155 Sum_probs=85.6
Q ss_pred CCChhHHHhh--HhhHHHHHHH-HHHHhhhhccCCceeEEEecccccchhhhhcc--CCCceEEEeccccCCCchhHHhh
Q 013393 256 GVTTEEFHED--IGIWQVRVVD-YWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK--DKDVWVMNVAPVRMSARLKIIYD 330 (444)
Q Consensus 256 g~~~~~f~~~--~~~w~~~v~~-y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~--~~~~wv~~~~~~~~~~~l~~~~~ 330 (444)
|+..+.|.++ ...+|++|.+ -++.|+ ++.++ -++|..++-|+-+--+. ... .-|+-++...
T Consensus 3 gipD~~F~~~~~~p~TK~EIRal~ls~L~--~~~g~--~l~DIGaGtGsi~iE~a~~~p~---~~v~AIe~~~------- 68 (187)
T COG2242 3 GIPDELFERDEGGPMTKEEIRALTLSKLR--PRPGD--RLWDIGAGTGSITIEWALAGPS---GRVIAIERDE------- 68 (187)
T ss_pred CCCchhhccCCCCCCcHHHHHHHHHHhhC--CCCCC--EEEEeCCCccHHHHHHHHhCCC---ceEEEEecCH-------
Confidence 4566788877 6789999986 456666 67766 78999999998753332 211 2233333211
Q ss_pred ccccccccccccCCCCCCccc-----------chhhccccccccccCCCChhhhhhhhcccccCCcEEEEe-ccHHHHHH
Q 013393 331 RGLIGTVHDWCESFSTYPRTY-----------DLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINY 398 (444)
Q Consensus 331 rg~~~~~~~~~~~~~~y~~~~-----------dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~ 398 (444)
.-+.+...-|++|. +|+-. |+-+.+.+|. -. .-+++.||--.-..|||||.+++. =+.+.+.+
T Consensus 69 -~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~~~~~~daiFI-GG--g~~i~~ile~~~~~l~~ggrlV~naitlE~~~~ 143 (187)
T COG2242 69 -EALELIERNAARFG-VDNLEVVEGDAPEALPDLPSPDAIFI-GG--GGNIEEILEAAWERLKPGGRLVANAITLETLAK 143 (187)
T ss_pred -HHHHHHHHHHHHhC-CCcEEEEeccchHhhcCCCCCCEEEE-CC--CCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHH
Confidence 11222233344444 33221 2334455665 11 256999999999999999999985 45667777
Q ss_pred HHHHHhhccc-eeE
Q 013393 399 IRKFITALKW-DGW 411 (444)
Q Consensus 399 ~~~~~~~~~w-~~~ 411 (444)
+-+..+.+.+ ++.
T Consensus 144 a~~~~~~~g~~ei~ 157 (187)
T COG2242 144 ALEALEQLGGREIV 157 (187)
T ss_pred HHHHHHHcCCceEE
Confidence 7777778888 554
No 469
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=34.92 E-value=1.4e+02 Score=29.53 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=49.7
Q ss_pred CCCCCCCCCeEEEECCCc-chHHHHHhhCCceEEE-cCcccchHHHHHHHHHcCCCcEEEEecCc------cC--CCCCC
Q 013393 38 KLNNGGNIRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTK------RL--PYPSR 107 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGt-G~~a~~La~~~V~gvd-is~~dis~a~i~~a~e~~~~~~~~~~d~~------~l--p~~~~ 107 (444)
.++++. +||=.|+|. |..+..+++.. |.. +.....++.+.+++++.+....+...+.. .+ ....+
T Consensus 159 ~~~~g~---~vlI~g~g~vG~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 159 GVRPGD---TVLVFGAGPIGLLTAAVAKAF--GATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred CCCCCC---EEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCC
Confidence 445554 777777753 45555566531 111 22222234444555554433222111100 00 12335
Q ss_pred CccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 108 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 108 sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.||+|+-... ....+.+..+.|+++|.++...
T Consensus 234 ~~d~vld~~g-------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 234 GPDVVIECTG-------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCEEEECCC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 5999984321 1236788899999999998654
No 470
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=34.31 E-value=1.3e+02 Score=29.87 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=47.0
Q ss_pred CeEEEECCCc-chHHHHHhhCCceEEE-cCcccchHHHHHHHHHcCCCcEEEEecC--ccC--CCCCCCcc-EEEecccc
Q 013393 46 RNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGT--KRL--PYPSRSFE-LAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGt-G~~a~~La~~~V~gvd-is~~dis~a~i~~a~e~~~~~~~~~~d~--~~l--p~~~~sFD-lI~~~~~~ 118 (444)
++||=.|||. |..+..+++.. |.. +...+.++...+.+++.+....+...+. ..+ ......+| +|+-.-
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~-- 237 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETA-- 237 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECC--
Confidence 3788888753 44555555531 111 1222334555566666554322211110 000 01234577 554221
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
- ....+.+..+.|++||.+++..
T Consensus 238 G-----~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 238 G-----VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred C-----CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 1357888999999999999864
No 471
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=34.19 E-value=76 Score=30.74 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=22.3
Q ss_pred CCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 347 YPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 347 y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
|+.+||++=.++==. .| ...-+..+ +.|||||.+|+.
T Consensus 153 ~~~~fD~iFiDadK~-~Y---~~y~~~~l---~ll~~GGviv~D 189 (247)
T PLN02589 153 YHGTFDFIFVDADKD-NY---INYHKRLI---DLVKVGGVIGYD 189 (247)
T ss_pred cCCcccEEEecCCHH-Hh---HHHHHHHH---HhcCCCeEEEEc
Confidence 567899986665211 11 11222222 799999999885
No 472
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=33.48 E-value=1.6e+02 Score=29.16 Aligned_cols=96 Identities=11% Similarity=0.117 Sum_probs=52.2
Q ss_pred CCCCCCCCCeEEEECC--CcchHHHHHhhCCceEEEcCcccchHHHHHHHHH-cCCCcEEEEe---cCcc-C-CCCCCCc
Q 013393 38 KLNNGGNIRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE-RGIPSTLGVL---GTKR-L-PYPSRSF 109 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGC--GtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e-~~~~~~~~~~---d~~~-l-p~~~~sF 109 (444)
.++++. +||=.|+ |.|.++..+++.. |..+.....++...+++++ .|....+... +..+ + ....+.+
T Consensus 148 ~~~~g~---~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 148 KPKKGE---TVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred CCCCCC---EEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCc
Confidence 344554 8888886 4667777777641 2222222334455566665 4543222111 1100 0 0112468
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
|+|+-.. . ...+.+..+.|+++|.++...
T Consensus 223 d~v~d~~------g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 223 DIYFDNV------G--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEEEECC------C--HHHHHHHHHHhccCcEEEEec
Confidence 9887432 1 256788999999999998643
No 473
>PLN02827 Alcohol dehydrogenase-like
Probab=33.40 E-value=1.2e+02 Score=30.77 Aligned_cols=89 Identities=15% Similarity=0.063 Sum_probs=48.2
Q ss_pred CeEEEECCCc-chHHHHHhhC-C---ceEEEcCcccchHHHHHHHHHcCCCcEEEEecC-ccC-----CCCCCCccEEEe
Q 013393 46 RNVLDVGCGV-ASFGAYLLSH-D---IIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRL-----PYPSRSFELAHC 114 (444)
Q Consensus 46 ~rVLDVGCGt-G~~a~~La~~-~---V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~-~~l-----p~~~~sFDlI~~ 114 (444)
.+||=.|+|. |.++..+++. + ++++ +.++...+++++.+....+...+. ... ....+.+|+|+-
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G~~~vi~~-----~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 269 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRGASQIIGV-----DINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFE 269 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEE-----CCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEE
Confidence 3898888752 4454555552 2 3333 334556677777665332211110 000 011236898874
Q ss_pred ccccccccccHHHHHHHHHhhcCCC-eEEEEEc
Q 013393 115 SRCRIDWLQRDGILLLELDRLLRPG-GYFVYSS 146 (444)
Q Consensus 115 ~~~~l~~~~d~~~~L~ei~rvLkPG-G~lvis~ 146 (444)
.- - ....+.+..+.|++| |.+++..
T Consensus 270 ~~--G-----~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 270 CV--G-----DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CC--C-----ChHHHHHHHHhhccCCCEEEEEC
Confidence 32 1 123577888899999 9998743
No 474
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=33.00 E-value=20 Score=37.12 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=36.3
Q ss_pred CcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH
Q 013393 348 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 393 (444)
Q Consensus 348 ~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~ 393 (444)
|.|||-.-.+..++ + .....+..++-+|-|.+||||.|++|.-.
T Consensus 293 ~~s~~~~vL~D~~D-w-m~~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 293 PGSFDRFVLSDHMD-W-MDPEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CCCeeEEEecchhh-h-CCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 68898888777777 3 33478999999999999999999998543
No 475
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=32.64 E-value=3.1e+02 Score=27.46 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=65.4
Q ss_pred eEEEECCCcchHHHHHhhCCc---eEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC---CCCCCccEEEecccccc
Q 013393 47 NVLDVGCGVASFGAYLLSHDI---IAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSRCRID 120 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V---~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp---~~~~sFDlI~~~~~~l~ 120 (444)
+++|+=||.|.+..-+...+. .++|+.+ ..++.-+.+.....+...|..... ++...+|+++...---.
T Consensus 5 ~~idLFsG~GG~~lGf~~agf~~~~a~Eid~-----~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~ 79 (328)
T COG0270 5 KVIDLFAGIGGLSLGFEEAGFEIVFANEIDP-----PAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQD 79 (328)
T ss_pred eEEeeccCCchHHHHHHhcCCeEEEEEecCH-----HHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcc
Confidence 799999999988877776543 3444443 333333333332344445544332 11117899987420011
Q ss_pred c--------cccHH----HHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeE
Q 013393 121 W--------LQRDG----ILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 121 ~--------~~d~~----~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~ 173 (444)
+ ..|.. .-+.++...++| -+|++---...... ....++.+.+.+++.||.
T Consensus 80 FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~--~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 80 FSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSS--KGQTFDEIKKELEELGYG 141 (328)
T ss_pred hhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhc--CchHHHHHHHHHHHcCCc
Confidence 1 12222 345566677888 45554221111111 345788999999999997
No 476
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=32.59 E-value=1.4e+02 Score=29.44 Aligned_cols=91 Identities=19% Similarity=0.255 Sum_probs=46.4
Q ss_pred eEEEECCCc-chHHHHHhhCCceEEE-cCcccchHHHHHHHHHcCCCcEEEEecC--ccC-CC-CCCCccEEEecccccc
Q 013393 47 NVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGT--KRL-PY-PSRSFELAHCSRCRID 120 (444)
Q Consensus 47 rVLDVGCGt-G~~a~~La~~~V~gvd-is~~dis~a~i~~a~e~~~~~~~~~~d~--~~l-p~-~~~sFDlI~~~~~~l~ 120 (444)
+||-.|+|. |..+..+++.. |+. +.....+....+...+.+....+...+. ..+ .. +.+.||+|+...
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~---- 235 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAA---- 235 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECC----
Confidence 788888654 55555555531 111 2222223344445544443211111000 000 11 234599998532
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.....+..+.+.|+++|.++...
T Consensus 236 ---g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 236 ---GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred ---CCHHHHHHHHHHhhcCCEEEEEc
Confidence 11346788899999999988754
No 477
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=32.46 E-value=1.5e+02 Score=28.95 Aligned_cols=89 Identities=10% Similarity=0.059 Sum_probs=50.3
Q ss_pred eEEEECC--CcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC-----CCCCCCccEEEeccccc
Q 013393 47 NVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSRCRI 119 (444)
Q Consensus 47 rVLDVGC--GtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-----p~~~~sFDlI~~~~~~l 119 (444)
+||=.|. |.|..+..+++.. |..+.....++...+++++.+....+...+ ..+ ....+.+|+|+-...
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~-~~~~~~v~~~~~~gvd~vld~~g-- 220 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKELGFDAVFNYKT-VSLEEALKEAAPDGIDCYFDNVG-- 220 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeCCC-ccHHHHHHHHCCCCcEEEEECCC--
Confidence 7887774 4566777777641 222333334455566666665532221111 111 112246898874321
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
...+.+..+.|+++|.++...
T Consensus 221 ------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 221 ------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred ------HHHHHHHHHhhccCCEEEEEc
Confidence 246788999999999998643
No 478
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=32.06 E-value=1.2e+02 Score=30.60 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=55.7
Q ss_pred CeEEEECCCc-chHHHHHhh---CCceEEEcCcccchHHHHHHHHH-cCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGV-ASFGAYLLS---HDIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGt-G~~a~~La~---~~V~gvdis~~dis~a~i~~a~e-~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|.=+|-|+ |..+..++- +.|+-+|++. ..++.-.. .+.++.........+.-.-.+.|+++..- ++.
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~-----~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaV-LIp 242 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI-----DRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAV-LIP 242 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCH-----HHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEE-Eec
Confidence 3677888885 556665554 4566666554 33332222 23333333222222221224689999776 566
Q ss_pred ccccHHHHHHHHHhhcCCCeEEE
Q 013393 121 WLQRDGILLLELDRLLRPGGYFV 143 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lv 143 (444)
-...+....+++.+.+|||+.++
T Consensus 243 gakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEE
Confidence 66777788999999999999988
No 479
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=31.67 E-value=1e+02 Score=32.26 Aligned_cols=83 Identities=11% Similarity=0.035 Sum_probs=47.9
Q ss_pred CeEEEECCCc-chHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGV-ASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGt-G~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
++|+=+|||. |.....+++. .|+.+|.+ +.....|...|... .+..+. -..+|+|+....
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d-----~~R~~~A~~~G~~~----~~~~e~---v~~aDVVI~atG---- 266 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVD-----PICALQAAMEGYEV----MTMEEA---VKEGDIFVTTTG---- 266 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC-----hhhHHHHHhcCCEE----ccHHHH---HcCCCEEEECCC----
Confidence 4899999995 5544444442 45555544 44445566555321 111111 135799986431
Q ss_pred cccHHHHHH-HHHhhcCCCeEEEEEcC
Q 013393 122 LQRDGILLL-ELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 122 ~~d~~~~L~-ei~rvLkPGG~lvis~p 147 (444)
.. ..+. +..+.+|+||.++....
T Consensus 267 --~~-~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 267 --NK-DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred --CH-HHHHHHHHhcCCCCcEEEEeCC
Confidence 22 3454 45889999999988764
No 480
>PRK01581 speE spermidine synthase; Validated
Probab=31.13 E-value=93 Score=32.10 Aligned_cols=124 Identities=13% Similarity=0.085 Sum_probs=65.6
Q ss_pred cCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhh--------cc-c-----cccccccccCCCCCCc
Q 013393 285 QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD--------RG-L-----IGTVHDWCESFSTYPR 349 (444)
Q Consensus 285 ~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~--------rg-~-----~~~~~~~~~~~~~y~~ 349 (444)
...+-++|+++..|-|+.+..+...+. |.+|+=++- +.-+.+.-. +| + --+..|-.+-+..-++
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 445567999999999998877776542 234444432 222222211 11 1 0012222222233357
Q ss_pred ccchhhccccccccc--cCCCChhhhhhhhcccccCCcEEEEecc-----HHHHHHHHHHHhhcccee
Q 013393 350 TYDLLHAWKVFSEIE--ERGCSFEDLLIEMDRMLRPEGFVIIRDK-----SSIINYIRKFITALKWDG 410 (444)
Q Consensus 350 ~~dl~h~~~~~~~~~--~~~c~~~~~~~e~drilrp~g~~~~rd~-----~~~~~~~~~~~~~~~w~~ 410 (444)
+||+|=++- +.... ..+.--.+.+-.+-|.|+|||.++++.. .+++..+.+.++..--.+
T Consensus 226 ~YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v 292 (374)
T PRK01581 226 LYDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTV 292 (374)
T ss_pred CccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCce
Confidence 899988773 21111 0011124566788999999999998754 233333444444444443
No 481
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=31.06 E-value=1.7e+02 Score=29.44 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 126 GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 126 ~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.++|..+...++||-.|++.+.+
T Consensus 222 t~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 222 TKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred HHHHHHHHhhcCCCcEEEEEcCC
Confidence 48999999999999999997644
No 482
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.55 E-value=1.1e+02 Score=25.38 Aligned_cols=74 Identities=19% Similarity=0.085 Sum_probs=47.6
Q ss_pred EEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccccHHH
Q 013393 48 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 127 (444)
Q Consensus 48 VLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~ 127 (444)
|| +-||.|..+..+++ .+.+.++++|.++.+......+++-..+.+|+|+... ...-
T Consensus 3 Il-l~C~~GaSSs~la~---------------km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~P-------Qv~~ 59 (99)
T cd05565 3 VL-VLCAGGGTSGLLAN---------------ALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAP-------QMAS 59 (99)
T ss_pred EE-EECCCCCCHHHHHH---------------HHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcC-------hHHH
Confidence 44 56888855544443 3446788888888887777666654445689887543 2334
Q ss_pred HHHHHHhhcCCCeEEEE
Q 013393 128 LLLELDRLLRPGGYFVY 144 (444)
Q Consensus 128 ~L~ei~rvLkPGG~lvi 144 (444)
.+.++...+.+-|.-+.
T Consensus 60 ~~~~i~~~~~~~~ipv~ 76 (99)
T cd05565 60 YYDELKKDTDRLGIKLV 76 (99)
T ss_pred HHHHHHHHhhhcCCCEE
Confidence 56777777777766443
No 483
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=30.53 E-value=62 Score=26.48 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=35.0
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
+||=+ ||+|.-+..+.+- ...+..++++.+....+......+-....+|+|+++.
T Consensus 3 KIL~a-CG~GvgSS~~ik~--------------kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 3 KILAA-CGNGVGSSTMIKM--------------KVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTST 57 (93)
T ss_pred EEEEE-CCCCccHHHHHHH--------------HHHHHHHHcCCCceeeeEEecccccCCCcccEEEEeh
Confidence 35544 9998766665542 2234667778877766666555553345689999875
No 484
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=29.73 E-value=1.9e+02 Score=28.07 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=46.0
Q ss_pred eEEEECCCcchHHHHH---hhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 47 NVLDVGCGVASFGAYL---LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~L---a~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
+||=.|+ |.++..+ ++.. |..+.....++...+++++.+....+ +.... ...+.+|+|+-...
T Consensus 158 ~vlV~g~--g~vg~~~~q~a~~~--G~~vi~~~~~~~~~~~~~~~g~~~~~---~~~~~-~~~~~~d~vid~~g------ 223 (319)
T cd08242 158 KVAVLGD--GKLGLLIAQVLALT--GPDVVLVGRHSEKLALARRLGVETVL---PDEAE-SEGGGFDVVVEATG------ 223 (319)
T ss_pred EEEEECC--CHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHcCCcEEe---Ccccc-ccCCCCCEEEECCC------
Confidence 7887775 4444444 4321 22222223345566666665543222 11111 23456999885321
Q ss_pred cHHHHHHHHHhhcCCCeEEEEE
Q 013393 124 RDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis 145 (444)
....+..+.+.|+++|.++..
T Consensus 224 -~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 224 -SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred -ChHHHHHHHHHhhcCCEEEEE
Confidence 134677888899999999873
No 485
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=29.47 E-value=42 Score=32.28 Aligned_cols=30 Identities=13% Similarity=0.358 Sum_probs=21.8
Q ss_pred eEEEECCCcchHHHHHhhC------------CceEEEcCccc
Q 013393 47 NVLDVGCGVASFGAYLLSH------------DIIAMSLAPND 76 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~------------~V~gvdis~~d 76 (444)
+|+|+|+|+|.++..+++. .++-++.+|..
T Consensus 21 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 21 RIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp EEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred EEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 7999999999999888761 35667777754
No 486
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.82 E-value=1.8e+02 Score=28.84 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=48.0
Q ss_pred CeEEEECCC-cchHHHHHhhCCceEE-EcCcccchHHHHHHHHHcCCCcEEEEecCccC-----CC-CCCCccEEEeccc
Q 013393 46 RNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PY-PSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCG-tG~~a~~La~~~V~gv-dis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-----p~-~~~sFDlI~~~~~ 117 (444)
++||=.|+| .|..+..+++.. |. .+...+.++.....+++.+....+...+ ..+ .+ ..+.+|+|+....
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~-~~~~~~i~~~~~~~~~d~vld~~g 244 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLR--GAGRIIAVGSRPNRVELAKEYGATDIVDYKN-GDVVEQILKLTGGKGVDAVIIAGG 244 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHcCCceEecCCC-CCHHHHHHHHhCCCCCcEEEECCC
Confidence 378888875 345555555531 11 1222333345556666655432221111 110 11 2346898885321
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
....+.++.+.|+++|.++..
T Consensus 245 -------~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 245 -------GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEe
Confidence 125788999999999999864
No 487
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=28.70 E-value=52 Score=26.75 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=9.4
Q ss_pred eEEEECCCcchHHHHHh
Q 013393 47 NVLDVGCGVASFGAYLL 63 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La 63 (444)
+|| +-||+|.-+..++
T Consensus 4 kIL-vvCgsG~~TS~m~ 19 (94)
T PRK10310 4 KII-VACGGAVATSTMA 19 (94)
T ss_pred eEE-EECCCchhHHHHH
Confidence 355 4488886555553
No 488
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=28.49 E-value=69 Score=32.32 Aligned_cols=88 Identities=17% Similarity=0.118 Sum_probs=46.0
Q ss_pred eEEEecccccchhhhhccCC---CceEEEeccccCC-Cchh----HHhhccccc---cccccccCCCCCCcccchhhccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRMS-ARLK----IIYDRGLIG---TVHDWCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~---~~wv~~~~~~~~~-~~l~----~~~~rg~~~---~~~~~~~~~~~y~~~~dl~h~~~ 358 (444)
..|+|+.++.|.+++.|.+. .-- |+-++.. .-+. .+-..|+-. +-.|..+.... ...||+|..+.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~---VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~-~~~fD~Ii~~~ 157 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGL---VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE-FAPYDVIFVTV 157 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCE---EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc-cCCccEEEECC
Confidence 47999999999999888642 111 2222321 2121 122223311 11132222221 24689887653
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
-.. .+.-.+-|.|+|||.+++-.
T Consensus 158 g~~----------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 158 GVD----------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred chH----------HhHHHHHHhcCCCCEEEEEe
Confidence 222 22234557899999988743
No 489
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=28.22 E-value=34 Score=34.20 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=69.5
Q ss_pred cCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHH-HHhh---CCceEEEcCcccchH
Q 013393 4 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA-YLLS---HDIIAMSLAPNDVHE 79 (444)
Q Consensus 4 ~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~-~La~---~~V~gvdis~~dis~ 79 (444)
+|=++.|..--++|..|--.-...+.++... ...|.|+=+|.|.|+. .+.. +.|.+++..|-.+ +
T Consensus 164 NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc~----------~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~sv-E 232 (351)
T KOG1227|consen 164 NGITQIWDPTKTMFSRGNIKEKKRVLNTSCD----------GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSV-E 232 (351)
T ss_pred cCeEEEechhhhhhhcCcHHHHHHhhhcccc----------cchhhhhhcccceEEeehhhccCccEEEEEecCHHHH-H
Confidence 3445566666677777764333333333221 1489999999999988 5544 3688999988544 5
Q ss_pred HHHHHHHHcCCCc--EEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeE
Q 013393 80 NQIQFALERGIPS--TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGY 141 (444)
Q Consensus 80 a~i~~a~e~~~~~--~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~ 141 (444)
+.++.++.++... .+..+ ..+.+-++...|-|.... ++ .-++-..-+-++|||.|-
T Consensus 233 aLrR~~~~N~V~~r~~i~~g-d~R~~~~~~~AdrVnLGL--lP---Sse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 233 ALRRNAEANNVMDRCRITEG-DNRNPKPRLRADRVNLGL--LP---SSEQGWPTAIKALKPEGG 290 (351)
T ss_pred HHHHHHHhcchHHHHHhhhc-cccccCccccchheeecc--cc---ccccchHHHHHHhhhcCC
Confidence 5555555443321 12222 344555667788887543 33 223344455667777544
No 490
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=28.15 E-value=1.8e+02 Score=29.43 Aligned_cols=90 Identities=21% Similarity=0.191 Sum_probs=56.5
Q ss_pred eEEEECCCc-chHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-----CCCCC-CCccEEEec
Q 013393 47 NVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-----LPYPS-RSFELAHCS 115 (444)
Q Consensus 47 rVLDVGCGt-G~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-----lp~~~-~sFDlI~~~ 115 (444)
+|+=+|||+ |.++..+++. .|+.+ |.++..++.|++.+....+.....+. +.... ..||+++=.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-----d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-----DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-----CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence 899999996 7777666663 44444 66677888888843322211111100 11122 369998743
Q ss_pred cccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 116 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 116 ~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
- - ....+.++.+.+||||.+++..-.
T Consensus 246 ~--G-----~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 246 V--G-----SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred C--C-----CHHHHHHHHHHhcCCCEEEEEecc
Confidence 3 2 235899999999999999986543
No 491
>PF06952 PsiA: PsiA protein; InterPro: IPR009713 This family consists of several Enterobacterial PsiA proteins. The function of PsiA is unknown although it is thought that it may affect the generation of an SOS signal in Escherichia coli [].
Probab=27.78 E-value=15 Score=35.01 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=35.8
Q ss_pred HHhhccccccccccccCCCCCCcccchhhccccccccccCCCChhhhhhhhccccc
Q 013393 327 IIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLR 382 (444)
Q Consensus 327 ~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilr 382 (444)
-+++..|-+++-.|||+|++ |-+.+.++- ..|++-.+|.|++.|-|
T Consensus 173 ~~~e~dL~~~fw~W~~RFps------l~~~~~~~~----~~~plw~vm~ei~~~~~ 218 (238)
T PF06952_consen 173 ELDEDDLETMFWRWQERFPS------LSELERWRW----ADDPLWSVMYEIRFAAR 218 (238)
T ss_pred hhhHHHHHHHHHHHHHhCcc------ccccHHHHh----cCCcHHHHHHHHHHHHh
Confidence 48899999999999999997 444443322 34899999999998754
No 492
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=27.49 E-value=40 Score=34.12 Aligned_cols=63 Identities=24% Similarity=0.291 Sum_probs=38.9
Q ss_pred CcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEE--eccHHHHHHHHHHHhhccceeEE
Q 013393 348 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII--RDKSSIINYIRKFITALKWDGWL 412 (444)
Q Consensus 348 ~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~--rd~~~~~~~~~~~~~~~~w~~~~ 412 (444)
|| +|++-+-..|--....--..--.|.-+=+-|||||++|= =|.-.++.+++.. ...+|--.+
T Consensus 195 p~-fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~-e~~~~gNdi 259 (389)
T KOG1975|consen 195 PR-FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG-EVERFGNDI 259 (389)
T ss_pred CC-cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc-cchhhccee
Confidence 45 899877666531001111233344556788999999985 5888888888876 444554433
No 493
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=27.38 E-value=2e+02 Score=28.97 Aligned_cols=88 Identities=14% Similarity=0.075 Sum_probs=48.9
Q ss_pred eEEEECCCc-chHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEec-Cc---c-C-CCCCCCccEEEec
Q 013393 47 NVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TK---R-L-PYPSRSFELAHCS 115 (444)
Q Consensus 47 rVLDVGCGt-G~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d-~~---~-l-p~~~~sFDlI~~~ 115 (444)
+||=.|||. |..+..+++. .|+++ +.++...+.+++.+....+...+ .. . + ....+.+|+|+-.
T Consensus 188 ~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~-----~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 262 (368)
T TIGR02818 188 TVAVFGLGGIGLSVIQGARMAKASRIIAI-----DINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFEC 262 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEE-----cCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEEC
Confidence 788888852 4555556653 24443 44556667777766543222111 00 0 0 0112358888743
Q ss_pred cccccccccHHHHHHHHHhhcCCC-eEEEEEc
Q 013393 116 RCRIDWLQRDGILLLELDRLLRPG-GYFVYSS 146 (444)
Q Consensus 116 ~~~l~~~~d~~~~L~ei~rvLkPG-G~lvis~ 146 (444)
- - ....+.+..+.+++| |.+++..
T Consensus 263 ~--G-----~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 263 I--G-----NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred C--C-----CHHHHHHHHHHhhcCCCeEEEEe
Confidence 2 1 134678888899986 9888654
No 494
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=27.16 E-value=3.8e+02 Score=27.49 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=50.0
Q ss_pred eEEEECCC-cchHHHHHhhC-CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc----CC--CCCCCccEEEecccc
Q 013393 47 NVLDVGCG-VASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LP--YPSRSFELAHCSRCR 118 (444)
Q Consensus 47 rVLDVGCG-tG~~a~~La~~-~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~----lp--~~~~sFDlI~~~~~~ 118 (444)
+||=.|+| .|..+..+++. +... +...+.++...+.+++.+... +....... +. .....+|+|+-.-.
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~Ga~~--vi~~d~~~~r~~~a~~~Ga~~-v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G- 263 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLLGAAV--VIVGDLNPARLAQARSFGCET-VDLSKDATLPEQIEQILGEPEVDCAVDCVG- 263 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCce--EEEeCCCHHHHHHHHHcCCeE-EecCCcccHHHHHHHHcCCCCCcEEEECCC-
Confidence 56657775 34455555553 2111 111234456777787777542 21110001 10 12246899885331
Q ss_pred cc--------ccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 119 ID--------WLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 119 l~--------~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.. ...+....+.+..+++++||.+++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 264 FEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 11 00112357899999999999999854
No 495
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=26.97 E-value=87 Score=27.70 Aligned_cols=52 Identities=13% Similarity=0.284 Sum_probs=27.0
Q ss_pred ccccCCcEEEEe------ccHHHHHHHHHHHhh---ccceeEEeccccccCCCCCCCceEEEEEe
Q 013393 379 RMLRPEGFVIIR------DKSSIINYIRKFITA---LKWDGWLSEVEPRIDALSSSEERVLIAKK 434 (444)
Q Consensus 379 rilrp~g~~~~r------d~~~~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~l~~~k 434 (444)
++|+|||.++|= ...+-.+.|.+.+.+ =.|.+..+..-+... .+..+++.+|
T Consensus 80 ~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~----~pp~l~~ieK 140 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKN----NPPLLVIIEK 140 (140)
T ss_dssp HHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS-------EEEEEEE
T ss_pred HhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCC----CCCEEEEEEC
Confidence 579999999881 222333444444444 467765544332222 2456776665
No 496
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=26.84 E-value=2.5e+02 Score=27.64 Aligned_cols=89 Identities=4% Similarity=-0.008 Sum_probs=48.3
Q ss_pred CeEEEECC--CcchHHHHHhhCCceEE-EcCcccchHHHHHHHHH-cCCCcEEEEecCccC-----CCCCCCccEEEecc
Q 013393 46 RNVLDVGC--GVASFGAYLLSHDIIAM-SLAPNDVHENQIQFALE-RGIPSTLGVLGTKRL-----PYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGC--GtG~~a~~La~~~V~gv-dis~~dis~a~i~~a~e-~~~~~~~~~~d~~~l-----p~~~~sFDlI~~~~ 116 (444)
.+||=.|+ |.|..+..+++.. |. .+.....++...+.+++ .|....+...+ ..+ ....+.+|+|+...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~-~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSELGFDAAINYKT-DNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC-CCHHHHHHHHCCCCceEEEECC
Confidence 37888886 4677777777631 21 22222334455555554 45433221111 111 01124699998532
Q ss_pred ccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 117 CRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 117 ~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
. . ..+.++.+.|+++|.++..
T Consensus 233 g------~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 233 G------G--EISDTVISQMNENSHIILC 253 (345)
T ss_pred C------c--HHHHHHHHHhccCCEEEEE
Confidence 1 1 2357888999999999864
No 497
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=26.41 E-value=2.4e+02 Score=28.44 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=48.5
Q ss_pred CeEEEECCC-cchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCc-cC-----CCCCCCccEEEe
Q 013393 46 RNVLDVGCG-VASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-RL-----PYPSRSFELAHC 114 (444)
Q Consensus 46 ~rVLDVGCG-tG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~-~l-----p~~~~sFDlI~~ 114 (444)
.+||=.|+| .|..+..+++. .|+++ +.++...+.+++.+....+...+.. .+ ....+.+|+|+-
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~-----~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 262 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAGASRIIGI-----DINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFE 262 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEE-----eCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEE
Confidence 378888875 24455555553 24444 3445566677666653322211110 00 011236898875
Q ss_pred ccccccccccHHHHHHHHHhhcCCC-eEEEEEc
Q 013393 115 SRCRIDWLQRDGILLLELDRLLRPG-GYFVYSS 146 (444)
Q Consensus 115 ~~~~l~~~~d~~~~L~ei~rvLkPG-G~lvis~ 146 (444)
.. - ....+.+..+.|+++ |.+++..
T Consensus 263 ~~--g-----~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 263 CI--G-----NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CC--C-----ChHHHHHHHHhhccCCCeEEEEc
Confidence 32 1 124778888999997 9888754
No 498
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=26.38 E-value=2.8e+02 Score=27.02 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=44.2
Q ss_pred eEEEECCCc-chHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccccH
Q 013393 47 NVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 125 (444)
Q Consensus 47 rVLDVGCGt-G~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~ 125 (444)
+||=.|||. |..+..++++. +..+.....+....+.+++.+....+ +.... +.+.+|+++... . .
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~---~~~~~--~~~~vD~vi~~~------~-~ 235 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQ--GAEVFAFTRSGEHQELARELGADWAG---DSDDL--PPEPLDAAIIFA------P-V 235 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHC--CCeEEEEcCChHHHHHHHHhCCcEEe---ccCcc--CCCcccEEEEcC------C-c
Confidence 566677652 23333344421 12222223334455566554532111 11111 335688876421 1 1
Q ss_pred HHHHHHHHhhcCCCeEEEEEc
Q 013393 126 GILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 126 ~~~L~ei~rvLkPGG~lvis~ 146 (444)
...+.++.+.|+++|.++...
T Consensus 236 ~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 236 GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred HHHHHHHHHHhhcCCEEEEEc
Confidence 247899999999999999754
No 499
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=26.06 E-value=1.2e+02 Score=26.05 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=48.8
Q ss_pred cccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhccceeEEeccccccCCCCCCCce
Q 013393 349 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEER 428 (444)
Q Consensus 349 ~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 428 (444)
..+|.+--|+ ||...+..-=-.+++-+|-|+++|||.+.-=-.. ..|+.-+..--+++... +...++..
T Consensus 49 ~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a---~~Vr~~L~~aGF~v~~~-------~g~g~Kr~ 117 (124)
T PF05430_consen 49 ARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYSSA---GAVRRALQQAGFEVEKV-------PGFGRKRE 117 (124)
T ss_dssp T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B---HHHHHHHHHCTEEEEEE-------E-STTSSE
T ss_pred ccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech---HHHHHHHHHcCCEEEEc-------CCCCCcch
Confidence 6788888888 7732211111368999999999999988753333 45788888888887532 22335788
Q ss_pred EEEEEec
Q 013393 429 VLIAKKK 435 (444)
Q Consensus 429 ~l~~~k~ 435 (444)
.|++.|+
T Consensus 118 ~~~a~~~ 124 (124)
T PF05430_consen 118 MLRAVKP 124 (124)
T ss_dssp EEEEEC-
T ss_pred heEEEcC
Confidence 9998874
No 500
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=25.69 E-value=1.6e+02 Score=23.97 Aligned_cols=84 Identities=12% Similarity=0.092 Sum_probs=47.7
Q ss_pred CCcchHHHHHhh----C--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC----CCCCCccEEEecccccccc
Q 013393 53 CGVASFGAYLLS----H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 53 CGtG~~a~~La~----~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp----~~~~sFDlI~~~~~~l~~~ 122 (444)
||.|.++..+++ . .++.+|. .+..++.+++.+ ..+..+|..+.. ..-+..|.|++... .
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~-----d~~~~~~~~~~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~ 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDR-----DPERVEELREEG--VEVIYGDATDPEVLERAGIEKADAVVILTD----D 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEES-----SHHHHHHHHHTT--SEEEES-TTSHHHHHHTTGGCESEEEEESS----S
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEEC-----CcHHHHHHHhcc--cccccccchhhhHHhhcCccccCEEEEccC----C
Confidence 566777777665 2 3555544 445556666666 445566644321 12246888886541 1
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
......+....|-+.|...++....
T Consensus 73 d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 73 DEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 2233556667788888888887543
Done!