BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013394
(444 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 232 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 282
C +C+ D+ + LR+LPC H+FHA CVD WL + RT CP+C+ D+ S+G
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRT-CPICRADSGPSSG 75
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 52.0 bits (123), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 232 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 275
C +C EDY++GE +R LPC H FH C+ WL + CPVC++
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDS-CPVCRK 60
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 232 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 276
C ICL GE +R LPC H FH CVD WL + + CP+C+ D
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK-CPICRVD 60
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 232 CAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCK 274
CA+CL + GE+ R LP C H FHA CVD WL S T CP+C+
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHST-CPLCR 50
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 232 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 273
CA+CLED+ ++L I PC+H FH C+ WL R CP+C
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLC 58
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 73 SNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFV 132
+++ L RG SF DKVRNA K G +A I+Y+N DG L G S + AV +
Sbjct: 111 KDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNT-DGKLNGTLGGSDASFVAAVGI 169
Query: 133 SKASGEKL 140
+K G+ L
Sbjct: 170 TKQEGDAL 177
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 61 ACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAG 120
A +N K + ++ L RG F+DK+ NA+KAG ++YDN+D G + +
Sbjct: 274 AYANRGMKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPN 333
Query: 121 NSAGIKIHAVFVSKASGEKLKQYAGST 147
++ A F+S+ G LK + T
Sbjct: 334 VD---QMPAAFISRKDGLLLKDNSKKT 357
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 207 SRRLVKAMPSLIFT----AVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW 262
S+ + A+P ++ T AV ++ C C IC +Y G+ LPC H FH CV W
Sbjct: 18 SKESIDALPEILVTEDHGAVGQEMC----CPICCSEYVKGDVATELPCHHYFHKPCVSIW 73
Query: 263 LTSWRTFCPVCK 274
L T CPVC+
Sbjct: 74 LQKSGT-CPVCR 84
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 232 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 281
C IC E + L C H F ++C++ W+ + CP+C++D ++ T
Sbjct: 56 CIICSEYFIEAVTLN---CAHSFCSYCINEWMKR-KIECPICRKDIKSKT 101
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 232 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 281
C IC E + L C H F ++C++ W+ + CP+C++D ++ T
Sbjct: 56 CIICSEYFIEAVTLN---CAHSFCSYCINEWMKR-KIECPICRKDIKSKT 101
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 248 LPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 281
L C H F ++C++ W+ + CP+C++D ++ T
Sbjct: 80 LNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT 112
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 232 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 274
C IC++ G ILPC H F C+D W R CP+C+
Sbjct: 18 CCICMD----GRADLILPCAHSFCQKCIDKWSDRHRN-CPICR 55
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 225 DNCTSRTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTS-WRTFCPVC 273
+N + + C ICLED + +LPC H H C + L +R CP+C
Sbjct: 1 ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR--CPLC 49
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 229 SRTCAICLED---YSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 274
+ C ICLED YS+ LPC H F C+ W+ T CP+CK
Sbjct: 5 AERCPICLEDPSNYSMA-----LPCLHAFCYVCITRWIRQNPT-CPLCK 47
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 219 FTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 274
F E T + C IC E+ + ++I PC H C+ SW S CP C+
Sbjct: 17 FELXCEMGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 32.7 bits (73), Expect = 0.37, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 224 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 274
E T + C IC E+ + ++I PC H C+ SW S CP C+
Sbjct: 19 EMGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 219 FTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 274
F E T + C IC E+ + ++I PC H C+ SW S CP C+
Sbjct: 324 FELXCEMGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|3ICU|A Chain A, Protease-Associated Domain Of The E3 Ligase Grail
Length = 194
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 59 LDAC---SNLTSKVEKVSNMSSAFVLTIR--GGCSFEDKVRNAQKAGFEAAIVYDNEDDG 113
L+AC +N T S + +++ I+ GGC+F DK+ A + G A++++
Sbjct: 83 LNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTR 142
Query: 114 VLVAMAGNSAGIKIHAVFVSKASGEKLKQ 142
V + + I A+ + G K+ Q
Sbjct: 143 NEVIPMSHPGAVDIVAIMIGNLKGTKILQ 171
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 224 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 274
E T + C IC E+ + ++I PC H C+ +W S CP C+
Sbjct: 21 EMGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 68
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 224 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 274
E T + C IC E+ + ++I PC H C+ SW S CP C+
Sbjct: 329 EMGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 224 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 274
E T + C IC E+ + ++I PC H C+ SW S CP C+
Sbjct: 327 EMGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 224 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 274
E T + C IC E+ + ++I PC H C+ SW S CP C+
Sbjct: 327 EMGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 250 CRHKFHAFCVDSWLTSWRTFCPVCKRD 276
C H FH C+ WL + R CP+ R+
Sbjct: 84 CNHAFHFHCISRWLKT-RQVCPLDNRE 109
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 229 SRTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLT-SWRTFCPVC 273
S C ICLED + +LPC H H C + L +R CP+C
Sbjct: 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR--CPLC 49
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 250 CRHKFHAFCVDSWLTSWRTFCPVCKRD 276
C H FH C+ WL + R CP+ R+
Sbjct: 65 CNHAFHFHCISRWLKT-RQVCPLDNRE 90
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 250 CRHKFHAFCVDSWLTSWRTFCPVCKRD 276
C H FH C+ WL + R CP+ R+
Sbjct: 57 CNHAFHFHCISRWLKT-RQVCPLDNRE 82
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 250 CRHKFHAFCVDSWLTSWRTFCPVCKRD 276
C H FH C+ WL + R CP+ R+
Sbjct: 73 CNHAFHFHCISRWLKT-RQVCPLDNRE 98
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 250 CRHKFHAFCVDSWLTSWRTFCPVCKRD 276
C H FH C+ WL + R CP+ R+
Sbjct: 73 CNHAFHFHCISRWLKT-RQVCPLDNRE 98
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 250 CRHKFHAFCVDSWLTSWRTFCPVCKRD 276
C H FH C+ WL + R CP+ R+
Sbjct: 75 CNHAFHFHCISRWLKT-RQVCPLDNRE 100
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 274
T + C IC E+ + ++I PC H C+ +W S CP C+
Sbjct: 337 TFQLCKICAEN---DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 250 CRHKFHAFCVDSWLTSWRTFCPVCKRD 276
C H FH C+ WL + R CP+ R+
Sbjct: 67 CNHAFHFHCISRWLKT-RQVCPLDNRE 92
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 232 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 275
C ICL+ + + C H+F A C+ + L S CP C++
Sbjct: 57 CPICLD--MLKNTMTTKECLHRFCADCIITALRSGNKECPTCRK 98
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 232 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 275
C ICL+ + + C H+F A C+ + L S CP C++
Sbjct: 37 CPICLD--MLKNTMTTKECLHRFCADCIITALRSGNKECPTCRK 78
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 227 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRT----FCPVCKRDA 277
C C +C ++L C FH +C+D L+S + +CP C+ DA
Sbjct: 18 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 72
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 227 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRT----FCPVCKRDA 277
C C +C ++L C FH +C+D L+S + +CP C+ DA
Sbjct: 16 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 70
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 250 CRHKFHAFCVDSWLTSWRTFCPVCKRD 276
C H FH C+ W+ CP+C++D
Sbjct: 48 CNHSFHNCCMSLWVKQ-NNRCPLCQQD 73
>pdb|3DT5|A Chain A, C_terminal Domain Of Protein Of Unknown Function Af_0924
From Archaeoglobus Fulgidus
Length = 135
Score = 28.9 bits (63), Expect = 6.8, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 210 LVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHA 256
L+KA S ++TA ED T C + LR+LP KF A
Sbjct: 30 LIKAFSSYVYTAQTEDEI--ETIITCRRYLAGNNLLRVLPXHFKFKA 74
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 232 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 275
C ICL+ + + C H+F A C+ + L S CP C++
Sbjct: 56 CPICLD--MLKNTMTTKECLHRFCADCIITALRSGNKECPTCRK 97
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 28.1 bits (61), Expect = 9.1, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 232 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRT----FCPVCKRDA 277
C +C ++L C FH +C+D L+S + +CP C+ DA
Sbjct: 8 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,255,038
Number of Sequences: 62578
Number of extensions: 356210
Number of successful extensions: 820
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 51
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)