Query 013394
Match_columns 444
No_of_seqs 382 out of 2638
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 09:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.8 5.7E-21 1.9E-25 176.9 13.0 134 28-162 49-192 (194)
2 2l0b_A E3 ubiquitin-protein li 99.7 8.8E-17 3E-21 131.5 7.4 79 200-279 11-89 (91)
3 1x4j_A Ring finger protein 38; 99.6 4.8E-16 1.6E-20 122.2 4.0 70 210-281 5-74 (75)
4 2ep4_A Ring finger protein 24; 99.5 2.1E-14 7.3E-19 112.2 6.6 54 228-282 14-67 (74)
5 2ect_A Ring finger protein 126 99.5 2.2E-14 7.5E-19 113.3 6.5 57 227-284 13-69 (78)
6 2kiz_A E3 ubiquitin-protein li 99.5 4.4E-14 1.5E-18 108.9 6.2 54 227-281 12-65 (69)
7 1iym_A EL5; ring-H2 finger, ub 99.5 3.3E-14 1.1E-18 104.6 4.1 49 229-278 5-54 (55)
8 1v87_A Deltex protein 2; ring- 99.4 5.2E-13 1.8E-17 113.0 7.5 59 229-287 25-102 (114)
9 2ecl_A Ring-box protein 2; RNF 99.4 1.6E-13 5.5E-18 109.7 3.7 51 229-280 15-77 (81)
10 2d8s_A Cellular modulator of i 99.4 3.7E-13 1.3E-17 107.5 5.5 60 225-285 11-76 (80)
11 2ecm_A Ring finger and CHY zin 99.4 4.3E-13 1.5E-17 98.5 5.2 50 228-278 4-54 (55)
12 3ng2_A RNF4, snurf, ring finge 99.3 8.6E-13 2.9E-17 101.9 4.2 53 228-281 9-65 (71)
13 2ea6_A Ring finger protein 4; 99.3 1.3E-12 4.4E-17 100.1 4.9 51 228-279 14-68 (69)
14 2xeu_A Ring finger protein 4; 99.3 1.4E-12 4.8E-17 98.4 4.0 51 229-280 3-57 (64)
15 3dpl_R Ring-box protein 1; ubi 99.3 1.9E-12 6.7E-17 108.7 5.1 50 228-278 36-100 (106)
16 2ecn_A Ring finger protein 141 99.3 2.1E-12 7E-17 99.7 3.5 50 228-282 14-63 (70)
17 2djb_A Polycomb group ring fin 99.3 7.2E-12 2.4E-16 97.4 6.4 54 228-284 14-67 (72)
18 2d8t_A Dactylidin, ring finger 99.2 1.9E-12 6.4E-17 100.5 2.1 49 228-280 14-62 (71)
19 1chc_A Equine herpes virus-1 r 99.2 7.1E-12 2.4E-16 96.0 5.1 48 229-279 5-52 (68)
20 2ct2_A Tripartite motif protei 99.2 1.1E-11 3.7E-16 99.6 5.8 53 228-280 14-69 (88)
21 2ecy_A TNF receptor-associated 99.2 1E-11 3.5E-16 94.8 4.0 50 228-280 14-63 (66)
22 2ysl_A Tripartite motif-contai 99.2 1.7E-11 5.7E-16 95.2 4.8 50 228-280 19-70 (73)
23 2yur_A Retinoblastoma-binding 99.2 3.1E-11 1.1E-15 94.4 6.1 49 228-279 14-64 (74)
24 4a0k_B E3 ubiquitin-protein li 99.2 3.7E-12 1.3E-16 108.7 0.4 51 228-279 47-112 (117)
25 2csy_A Zinc finger protein 183 99.1 2.2E-11 7.5E-16 96.7 4.6 47 228-278 14-60 (81)
26 1g25_A CDK-activating kinase a 99.1 2.7E-11 9.2E-16 92.2 4.6 53 229-281 3-57 (65)
27 1t1h_A Gspef-atpub14, armadill 99.1 4.4E-11 1.5E-15 94.2 4.9 50 228-280 7-56 (78)
28 2ct0_A Non-SMC element 1 homol 99.1 5.1E-11 1.8E-15 93.4 5.1 53 229-283 15-68 (74)
29 2ysj_A Tripartite motif-contai 99.1 9.7E-11 3.3E-15 88.4 5.3 43 228-273 19-63 (63)
30 4ayc_A E3 ubiquitin-protein li 99.1 4.6E-11 1.6E-15 104.7 3.7 47 229-279 53-99 (138)
31 2ecw_A Tripartite motif-contai 99.1 1.1E-10 3.8E-15 92.8 5.6 50 228-280 18-72 (85)
32 3lrq_A E3 ubiquitin-protein li 99.1 5E-11 1.7E-15 98.8 3.5 49 229-279 22-70 (100)
33 4ap4_A E3 ubiquitin ligase RNF 99.0 7.9E-11 2.7E-15 101.4 4.0 53 228-281 6-62 (133)
34 2ecv_A Tripartite motif-contai 99.0 1.3E-10 4.6E-15 92.2 4.8 50 228-280 18-72 (85)
35 2egp_A Tripartite motif-contai 99.0 3.8E-11 1.3E-15 94.5 1.2 49 228-279 11-65 (79)
36 2ecj_A Tripartite motif-contai 99.0 1.1E-10 3.7E-15 86.3 3.5 43 228-273 14-58 (58)
37 3fl2_A E3 ubiquitin-protein li 99.0 2E-10 6.9E-15 98.6 5.2 48 229-279 52-99 (124)
38 3ztg_A E3 ubiquitin-protein li 99.0 2.4E-10 8.2E-15 92.8 5.2 48 228-278 12-61 (92)
39 2y43_A E3 ubiquitin-protein li 99.0 2.9E-10 9.8E-15 93.7 3.9 47 229-279 22-69 (99)
40 4ap4_A E3 ubiquitin ligase RNF 99.0 3.4E-10 1.2E-14 97.4 4.2 52 228-280 71-126 (133)
41 2ckl_A Polycomb group ring fin 99.0 3.5E-10 1.2E-14 94.7 4.2 49 229-280 15-63 (108)
42 1z6u_A NP95-like ring finger p 98.9 5.4E-10 1.9E-14 99.5 5.0 49 229-280 78-126 (150)
43 2ckl_B Ubiquitin ligase protei 98.9 4.3E-10 1.5E-14 101.3 4.1 49 229-279 54-102 (165)
44 1e4u_A Transcriptional repress 98.9 1.1E-09 3.9E-14 86.7 5.3 54 228-282 10-65 (78)
45 3l11_A E3 ubiquitin-protein li 98.9 2.9E-10 9.9E-15 96.3 1.5 48 229-279 15-62 (115)
46 1jm7_A BRCA1, breast cancer ty 98.9 7E-10 2.4E-14 93.1 3.8 49 229-280 21-71 (112)
47 3hct_A TNF receptor-associated 98.9 6.6E-10 2.3E-14 94.7 3.4 49 229-280 18-66 (118)
48 1rmd_A RAG1; V(D)J recombinati 98.9 9.8E-10 3.4E-14 93.1 4.0 50 229-281 23-72 (116)
49 3knv_A TNF receptor-associated 98.8 1E-09 3.5E-14 96.7 2.9 49 228-279 30-78 (141)
50 2vje_A E3 ubiquitin-protein li 98.8 1.9E-09 6.6E-14 82.0 3.8 46 229-278 8-56 (64)
51 1bor_A Transcription factor PM 98.8 9.6E-10 3.3E-14 81.3 1.4 46 228-280 5-50 (56)
52 2y1n_A E3 ubiquitin-protein li 98.8 2.2E-09 7.7E-14 108.8 4.2 49 229-280 332-380 (389)
53 2vje_B MDM4 protein; proto-onc 98.8 3.6E-09 1.2E-13 80.2 3.5 47 229-279 7-56 (63)
54 2kr4_A Ubiquitin conjugation f 98.8 4.5E-09 1.5E-13 84.5 4.1 48 228-279 13-60 (85)
55 2kre_A Ubiquitin conjugation f 98.7 4.4E-09 1.5E-13 87.2 3.4 48 228-279 28-75 (100)
56 1wgm_A Ubiquitin conjugation f 98.7 5.2E-09 1.8E-13 86.5 3.5 49 228-280 21-70 (98)
57 2ek8_A Aminopeptidase; metallo 98.7 5.2E-08 1.8E-12 100.4 10.5 91 47-144 91-181 (421)
58 2c2l_A CHIP, carboxy terminus 98.7 8.4E-09 2.9E-13 99.6 3.7 49 228-279 207-255 (281)
59 1jm7_B BARD1, BRCA1-associated 98.6 5.7E-09 1.9E-13 88.7 1.5 45 229-279 22-67 (117)
60 4ic3_A E3 ubiquitin-protein li 98.6 9.7E-09 3.3E-13 80.2 1.8 43 229-279 24-67 (74)
61 1vyx_A ORF K3, K3RING; zinc-bi 98.6 2.5E-08 8.6E-13 74.9 3.3 48 228-278 5-58 (60)
62 3hcs_A TNF receptor-associated 98.6 2.5E-08 8.7E-13 90.0 3.4 50 228-280 17-66 (170)
63 3k1l_B Fancl; UBC, ring, RWD, 98.6 8.2E-09 2.8E-13 102.2 0.1 53 227-279 306-373 (381)
64 2yu4_A E3 SUMO-protein ligase 98.5 4.2E-08 1.4E-12 80.2 4.1 46 228-276 6-59 (94)
65 3iib_A Peptidase M28; YP_92679 98.5 1.5E-07 5.2E-12 97.7 8.4 105 38-147 95-216 (444)
66 2f42_A STIP1 homology and U-bo 98.5 4.4E-08 1.5E-12 89.4 3.1 49 228-279 105-153 (179)
67 2ea5_A Cell growth regulator w 98.5 1E-07 3.5E-12 73.3 4.0 45 228-280 14-59 (68)
68 1wim_A KIAA0161 protein; ring 98.4 7.3E-08 2.5E-12 78.6 3.1 48 229-276 5-61 (94)
69 2ecg_A Baculoviral IAP repeat- 98.4 6.8E-08 2.3E-12 75.5 1.7 43 229-279 25-68 (75)
70 3fed_A Glutamate carboxypeptid 98.4 2.5E-07 8.4E-12 101.1 5.7 104 40-145 118-267 (707)
71 2yho_A E3 ubiquitin-protein li 98.3 1.7E-07 5.9E-12 74.1 1.4 44 229-280 18-62 (79)
72 2bay_A PRE-mRNA splicing facto 98.3 3.3E-07 1.1E-11 68.9 2.7 50 229-282 3-53 (61)
73 3kas_A Transferrin receptor pr 98.3 8.5E-07 2.9E-11 95.9 6.6 95 47-145 106-230 (640)
74 3htk_C E3 SUMO-protein ligase 98.2 6.5E-07 2.2E-11 85.9 2.9 49 229-279 181-232 (267)
75 3t6p_A Baculoviral IAP repeat- 98.1 5.9E-07 2E-11 90.2 1.5 44 228-279 294-338 (345)
76 3vk6_A E3 ubiquitin-protein li 98.1 2.4E-06 8.3E-11 69.8 3.9 48 231-280 3-50 (101)
77 1y9z_A Alkaline serine proteas 97.7 5.5E-05 1.9E-09 78.2 7.3 86 60-146 258-350 (441)
78 3nw0_A Non-structural maintena 97.7 2.3E-05 8E-10 74.6 4.0 53 229-283 180-233 (238)
79 3i6s_A Subtilisin-like proteas 97.6 3.5E-05 1.2E-09 83.6 5.4 88 51-146 259-346 (649)
80 1xf1_A C5A peptidase, SCP; hyd 97.6 8.5E-05 2.9E-09 83.7 7.8 75 60-142 269-343 (926)
81 2lri_C Autoimmune regulator; Z 94.7 0.022 7.5E-07 43.1 3.4 47 227-276 10-59 (66)
82 2jun_A Midline-1; B-BOX, TRIM, 93.0 0.045 1.6E-06 44.2 2.5 34 229-262 3-36 (101)
83 2ko5_A Ring finger protein Z; 90.1 0.41 1.4E-05 38.4 5.0 50 228-283 27-77 (99)
84 1wil_A KIAA1045 protein; ring 89.9 0.16 5.6E-06 39.9 2.5 35 227-262 13-47 (89)
85 2k16_A Transcription initiatio 87.1 0.15 5.1E-06 39.1 0.6 51 228-278 17-70 (75)
86 2l5u_A Chromodomain-helicase-D 86.7 0.3 1E-05 36.0 2.0 46 228-276 10-58 (61)
87 1mm2_A MI2-beta; PHD, zinc fin 85.7 0.15 5.1E-06 37.7 -0.1 49 226-277 6-57 (61)
88 3u5n_A E3 ubiquitin-protein li 85.5 0.16 5.4E-06 46.8 -0.0 48 226-276 4-54 (207)
89 2lbm_A Transcriptional regulat 85.2 0.75 2.6E-05 39.9 4.1 48 225-275 59-116 (142)
90 1we9_A PHD finger family prote 84.2 0.35 1.2E-05 35.8 1.4 48 228-275 5-57 (64)
91 2yt5_A Metal-response element- 82.5 0.26 8.8E-06 36.7 0.0 49 228-276 5-61 (66)
92 3o36_A Transcription intermedi 82.4 0.3 1E-05 44.0 0.4 46 228-276 3-51 (184)
93 3vta_A Cucumisin; subtilisin-l 82.3 0.96 3.3E-05 48.4 4.4 69 61-143 269-337 (621)
94 2yql_A PHD finger protein 21A; 81.6 0.17 5.8E-06 36.6 -1.2 46 227-275 7-55 (56)
95 3ql9_A Transcriptional regulat 81.5 1.3 4.4E-05 37.8 4.0 48 225-275 53-110 (129)
96 2ysm_A Myeloid/lymphoid or mix 81.5 0.41 1.4E-05 39.5 0.9 47 228-274 6-55 (111)
97 1f62_A Transcription factor WS 81.3 0.56 1.9E-05 33.0 1.5 45 231-275 2-49 (51)
98 1wem_A Death associated transc 79.0 0.69 2.4E-05 35.4 1.4 48 229-277 16-71 (76)
99 1xwh_A Autoimmune regulator; P 78.6 0.5 1.7E-05 35.3 0.5 46 228-276 7-55 (66)
100 3lqh_A Histone-lysine N-methyl 76.8 0.62 2.1E-05 42.2 0.6 48 229-276 2-63 (183)
101 1wev_A Riken cDNA 1110020M19; 75.7 0.61 2.1E-05 37.0 0.2 50 229-278 16-74 (88)
102 1fp0_A KAP-1 corepressor; PHD 75.3 1.5 5.1E-05 34.9 2.4 46 227-275 23-71 (88)
103 2puy_A PHD finger protein 21A; 75.2 0.42 1.4E-05 35.0 -0.8 47 228-277 4-53 (60)
104 3v43_A Histone acetyltransfera 73.7 2.2 7.7E-05 35.1 3.2 46 229-274 5-62 (112)
105 2l43_A N-teminal domain from h 72.8 0.59 2E-05 37.1 -0.5 51 228-278 24-77 (88)
106 3m62_A Ubiquitin conjugation f 72.3 1.8 6E-05 48.5 2.9 49 228-280 890-939 (968)
107 2ku3_A Bromodomain-containing 70.6 1.4 4.7E-05 33.5 1.1 49 227-275 14-65 (71)
108 2xb1_A Pygopus homolog 2, B-ce 70.2 0.78 2.7E-05 37.6 -0.4 49 229-277 3-62 (105)
109 1weu_A Inhibitor of growth fam 70.1 1.8 6.1E-05 34.6 1.7 45 229-277 36-86 (91)
110 2ro1_A Transcription intermedi 69.9 0.72 2.4E-05 41.9 -0.8 45 229-276 2-49 (189)
111 2kgg_A Histone demethylase jar 68.5 1.7 5.8E-05 30.7 1.1 45 230-274 3-52 (52)
112 1wep_A PHF8; structural genomi 68.3 3.9 0.00013 31.4 3.3 48 229-277 12-64 (79)
113 2e6r_A Jumonji/ARID domain-con 66.1 0.66 2.3E-05 37.1 -1.6 49 228-276 15-66 (92)
114 3v43_A Histone acetyltransfera 66.0 1.7 5.9E-05 35.8 0.9 46 230-275 62-111 (112)
115 1wen_A Inhibitor of growth fam 65.5 3.1 0.00011 31.5 2.2 46 228-277 15-66 (71)
116 2ri7_A Nucleosome-remodeling f 65.2 1.7 5.9E-05 38.4 0.8 47 229-276 8-59 (174)
117 2lv9_A Histone-lysine N-methyl 64.5 1.8 6.2E-05 34.9 0.7 45 230-275 29-75 (98)
118 3shb_A E3 ubiquitin-protein li 64.2 1 3.4E-05 34.9 -0.8 47 230-276 27-77 (77)
119 2jwa_A Receptor tyrosine-prote 63.4 5.9 0.0002 27.2 3.0 8 181-188 31-38 (44)
120 2cs3_A Protein C14ORF4, MY039 63.3 8.3 0.00028 30.0 4.2 37 228-265 14-52 (93)
121 1wew_A DNA-binding family prot 62.5 2.3 8E-05 32.7 1.0 48 229-277 16-73 (78)
122 1wee_A PHD finger family prote 61.4 1.5 5.3E-05 33.1 -0.3 48 229-277 16-67 (72)
123 2e6s_A E3 ubiquitin-protein li 61.2 1.7 5.7E-05 33.6 -0.1 47 229-275 26-76 (77)
124 2kwj_A Zinc finger protein DPF 60.6 2.6 8.8E-05 34.9 1.0 45 230-274 2-59 (114)
125 3asl_A E3 ubiquitin-protein li 60.6 1.8 6.1E-05 32.7 -0.0 45 231-275 20-68 (70)
126 2vpb_A Hpygo1, pygopus homolog 59.4 6.7 0.00023 29.1 3.0 33 228-260 7-41 (65)
127 1weo_A Cellulose synthase, cat 58.2 14 0.00048 29.2 4.7 56 229-284 16-75 (93)
128 4gne_A Histone-lysine N-methyl 57.1 7 0.00024 32.0 3.0 45 227-277 13-63 (107)
129 3ask_A E3 ubiquitin-protein li 56.5 2.7 9.2E-05 39.2 0.4 47 229-275 174-224 (226)
130 2ks1_B Epidermal growth factor 56.3 9.1 0.00031 26.3 3.0 10 179-188 29-38 (44)
131 3o70_A PHD finger protein 13; 55.5 2.2 7.5E-05 32.1 -0.3 46 229-275 19-66 (68)
132 3i2d_A E3 SUMO-protein ligase 53.1 8.6 0.00029 38.4 3.5 49 229-279 249-300 (371)
133 3c6w_A P28ING5, inhibitor of g 49.3 3.4 0.00012 30.0 -0.1 43 229-275 9-57 (59)
134 2cu8_A Cysteine-rich protein 2 48.7 12 0.00041 27.8 3.0 40 229-279 9-48 (76)
135 1z60_A TFIIH basal transcripti 48.7 5.5 0.00019 29.2 0.9 43 230-273 16-58 (59)
136 2vnf_A ING 4, P29ING4, inhibit 48.7 3.4 0.00012 30.1 -0.2 43 229-275 10-58 (60)
137 1iml_A CRIP, cysteine rich int 48.4 9.5 0.00032 28.4 2.3 41 229-274 27-68 (76)
138 4fo9_A E3 SUMO-protein ligase 47.8 12 0.0004 37.3 3.5 49 229-279 215-266 (360)
139 2ysm_A Myeloid/lymphoid or mix 45.1 3.1 0.00011 34.0 -1.0 46 231-276 56-104 (111)
140 2d8v_A Zinc finger FYVE domain 43.6 15 0.0005 27.5 2.5 31 228-262 7-38 (67)
141 2klu_A T-cell surface glycopro 43.2 16 0.00055 27.2 2.7 23 162-184 7-29 (70)
142 2l2t_A Receptor tyrosine-prote 43.1 21 0.00072 24.5 3.1 9 181-189 30-38 (44)
143 2dj7_A Actin-binding LIM prote 41.3 18 0.0006 27.4 2.9 39 229-278 15-53 (80)
144 1zbd_B Rabphilin-3A; G protein 41.1 10 0.00036 32.3 1.7 33 228-260 54-88 (134)
145 2rsd_A E3 SUMO-protein ligase 40.1 2.7 9.4E-05 31.4 -1.9 44 230-275 11-64 (68)
146 2g6q_A Inhibitor of growth pro 39.1 6.3 0.00021 28.9 -0.0 43 229-275 11-59 (62)
147 2co8_A NEDD9 interacting prote 38.4 15 0.0005 28.0 2.0 42 228-280 14-55 (82)
148 1x64_A Alpha-actinin-2 associa 38.4 35 0.0012 26.1 4.3 41 228-280 24-64 (89)
149 3t7l_A Zinc finger FYVE domain 36.3 21 0.00073 28.0 2.7 50 229-278 20-75 (90)
150 2kwj_A Zinc finger protein DPF 35.8 4 0.00014 33.7 -1.7 48 230-277 59-109 (114)
151 1z2q_A LM5-1; membrane protein 35.6 24 0.00083 27.2 2.9 35 228-262 20-55 (84)
152 1g47_A Pinch protein; LIM doma 35.5 32 0.0011 25.2 3.6 42 229-280 11-52 (77)
153 2yw8_A RUN and FYVE domain-con 35.2 24 0.00082 27.1 2.8 33 229-261 19-52 (82)
154 3a1b_A DNA (cytosine-5)-methyl 34.2 24 0.00082 30.9 2.9 47 224-274 74-132 (159)
155 1vfy_A Phosphatidylinositol-3- 33.6 27 0.00093 26.1 2.8 32 230-261 12-44 (73)
156 1joc_A EEA1, early endosomal a 33.3 24 0.00082 29.5 2.7 33 229-261 69-102 (125)
157 3o7a_A PHD finger protein 13 v 32.5 6.7 0.00023 27.5 -0.8 42 234-275 8-51 (52)
158 1zfo_A LAsp-1; LIM domain, zin 32.5 11 0.00038 23.5 0.3 28 230-259 4-31 (31)
159 1x63_A Skeletal muscle LIM-pro 31.5 43 0.0015 24.9 3.7 42 229-280 15-56 (82)
160 1x4u_A Zinc finger, FYVE domai 30.8 29 0.00098 26.7 2.6 32 229-260 14-46 (84)
161 2pv0_B DNA (cytosine-5)-methyl 29.8 32 0.0011 34.5 3.4 48 225-275 89-147 (386)
162 2zet_C Melanophilin; complex, 29.5 22 0.00077 30.9 1.9 47 228-275 67-116 (153)
163 2dar_A PDZ and LIM domain prot 29.4 39 0.0013 25.8 3.2 39 229-279 25-63 (90)
164 1x61_A Thyroid receptor intera 29.3 54 0.0019 23.6 3.9 39 230-278 6-44 (72)
165 2d8x_A Protein pinch; LIM doma 29.3 41 0.0014 24.2 3.1 40 229-280 5-44 (70)
166 1wyh_A SLIM 2, skeletal muscle 29.1 39 0.0013 24.4 3.0 41 229-279 5-45 (72)
167 2cor_A Pinch protein; LIM doma 29.0 27 0.00093 26.2 2.1 40 229-280 15-54 (79)
168 2d8y_A Eplin protein; LIM doma 28.9 46 0.0016 25.4 3.6 41 229-280 15-55 (91)
169 1x4k_A Skeletal muscle LIM-pro 28.7 46 0.0016 24.0 3.4 40 230-279 6-45 (72)
170 3zyq_A Hepatocyte growth facto 28.4 27 0.00091 32.2 2.4 34 229-262 164-198 (226)
171 1dvp_A HRS, hepatocyte growth 27.7 26 0.0009 31.9 2.2 34 229-262 161-195 (220)
172 1wfk_A Zinc finger, FYVE domai 27.3 34 0.0011 26.7 2.4 51 229-279 9-66 (88)
173 1a7i_A QCRP2 (LIM1); LIM domai 27.2 24 0.00082 26.4 1.5 40 229-279 7-46 (81)
174 3f6q_B LIM and senescent cell 27.0 43 0.0015 23.9 2.9 42 229-280 11-52 (72)
175 1y02_A CARP2, FYVE-ring finger 26.7 8.3 0.00028 32.3 -1.3 46 229-275 19-65 (120)
176 1x4l_A Skeletal muscle LIM-pro 26.4 44 0.0015 24.2 2.9 41 229-279 5-47 (72)
177 3kv5_D JMJC domain-containing 25.6 15 0.0005 38.1 0.0 46 230-276 38-88 (488)
178 3mpx_A FYVE, rhogef and PH dom 25.2 15 0.00051 36.8 0.0 35 229-263 375-410 (434)
179 3kqi_A GRC5, PHD finger protei 25.1 21 0.00073 26.9 0.9 46 231-276 11-61 (75)
180 2d8z_A Four and A half LIM dom 25.1 60 0.0021 23.2 3.4 39 229-279 5-43 (70)
181 1v6g_A Actin binding LIM prote 24.7 53 0.0018 24.4 3.1 39 230-280 16-54 (81)
182 1x68_A FHL5 protein; four-and- 24.6 60 0.0021 23.8 3.4 39 230-278 6-46 (76)
183 2k1k_A Ephrin type-A receptor 23.6 67 0.0023 21.1 3.0 19 166-184 15-33 (38)
184 2jmi_A Protein YNG1, ING1 homo 23.6 15 0.0005 29.2 -0.3 43 229-275 26-75 (90)
185 2l4z_A DNA endonuclease RBBP8, 21.8 44 0.0015 27.5 2.3 39 229-278 61-99 (123)
186 2o35_A Hypothetical protein DU 21.6 35 0.0012 27.5 1.4 12 254-265 43-54 (105)
187 3fyb_A Protein of unknown func 21.5 35 0.0012 27.5 1.4 12 254-265 42-53 (104)
188 1x62_A C-terminal LIM domain p 21.5 54 0.0018 24.3 2.5 38 229-278 15-52 (79)
189 2l3k_A Rhombotin-2, linker, LI 21.3 38 0.0013 27.7 1.8 36 229-265 36-71 (123)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.85 E-value=5.7e-21 Score=176.85 Aligned_cols=134 Identities=22% Similarity=0.322 Sum_probs=105.2
Q ss_pred ceeeEeeccccccCCCCCCCCceEEEEecC---CcCCCCCCCCCCcccC----CCcceEEEEecCC-CCHHHHHHHHHHc
Q 013394 28 NVTLSFDDIEANFAPAIRGSGDCGVLYVAE---PLDACSNLTSKVEKVS----NMSSAFVLTIRGG-CSFEDKVRNAQKA 99 (444)
Q Consensus 28 ~~~~~f~~~~A~Fg~~~~~~~~~G~L~~~~---p~~aC~~l~~~~~~~~----~~~~~ivLV~RG~-CsF~~Kv~~Aq~a 99 (444)
|.++.+.+.+|.||...+..++.|.|+.+. +.+||++.++...... ..+++||||+||+ |+|.+|+++||++
T Consensus 49 n~t~~~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~a 128 (194)
T 3icu_A 49 NRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYER 128 (194)
T ss_dssp TCEEEEEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHT
T ss_pred cceeeecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHC
Confidence 677788999999999999999999998874 7899999876432211 2368999999999 9999999999999
Q ss_pred CCeEEEEeccC-CCcceeeecCCCCCceEEEEEEeccccchhhhhcCcc-cceeeeeccccccch
Q 013394 100 GFEAAIVYDNE-DDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGST-DMEIWIIPSFENSAW 162 (444)
Q Consensus 100 GA~avII~n~~-~~~~~~~~~g~~~~i~Ip~v~Is~~~G~~L~~~l~~~-~v~v~I~P~~~~s~~ 162 (444)
||+||||||++ ++.....|.... ...||++||++.+|+.|++.++++ .+.+.+........|
T Consensus 129 GA~avIIyNn~~~g~~~~~m~~~~-~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg~~h~pw 192 (194)
T 3icu_A 129 GASGAVIFNFPGTRNEVIPMSHPG-AVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKHGPW 192 (194)
T ss_dssp TCSEEEEECCTTCTTCCCCCCCTT-CCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEEEEECCC
T ss_pred CCcEEEEEeCCCCCCceeeecCCC-CCceeEEEECHHHHHHHHHHHHCCCeEEEEEECCCccCCC
Confidence 99999999985 333445555433 457999999999999999988765 455555544443334
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.66 E-value=8.8e-17 Score=131.48 Aligned_cols=79 Identities=29% Similarity=0.555 Sum_probs=68.4
Q ss_pred cccccCCcHHHHhhcccceeeccccccCCCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 200 GREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 200 ~r~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
.....+++++.++.||.+.+.........+..|+||+++|..++.++.|||+|.||..||++|+..+. .||+||+++..
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC-BCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC-cCcCcCccCCC
Confidence 34457789999999999888776655556789999999999999999999999999999999999855 59999998864
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.8e-16 Score=122.19 Aligned_cols=70 Identities=37% Similarity=0.854 Sum_probs=57.2
Q ss_pred HHhhcccceeeccccccCCCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCCC
Q 013394 210 LVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 281 (444)
Q Consensus 210 ~~~~lp~~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 281 (444)
.++.+|...+.... ...++.+|+||+++|..++.++.+||+|.||..||++|++.+. .||+||+++.+..
T Consensus 5 ~i~~lp~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 5 SSGQLPSYRFNPNN-HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR-TCPICRADSGPSS 74 (75)
T ss_dssp CCSSCCCEEBCSSS-CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS-SCTTTCCCCCCCC
T ss_pred hHhhCCcEEecCcc-ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC-cCcCcCCcCCCCC
Confidence 34577877776433 2234689999999999999999999999999999999999865 5999999887643
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.1e-14 Score=112.24 Aligned_cols=54 Identities=35% Similarity=0.869 Sum_probs=47.8
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCCCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 282 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~ 282 (444)
.+.+|+||++.|..++.+++|+|+|.||..||++|++.+. .||+||+++.....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQLAQ 67 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSSCCS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCcccccccc
Confidence 4589999999999999999999999999999999999865 59999999876433
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=2.2e-14 Score=113.33 Aligned_cols=57 Identities=37% Similarity=0.915 Sum_probs=49.6
Q ss_pred CCCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCCCCCC
Q 013394 227 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEP 284 (444)
Q Consensus 227 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~ 284 (444)
..+.+|+||++.|..++.++.++|+|.||..||.+|++.+. .||+||+++......+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD-SCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTC-SCTTTCCCCCCSCSCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCC-cCcCcCCccCCcccCC
Confidence 34689999999999999999999999999999999998754 5999999988765443
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=4.4e-14 Score=108.93 Aligned_cols=54 Identities=43% Similarity=0.960 Sum_probs=47.7
Q ss_pred CCCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCCC
Q 013394 227 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 281 (444)
Q Consensus 227 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 281 (444)
..+..|+||++.|..++.++.++|+|.||..||.+|+..+.. ||+||.++....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~-CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK-CPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSB-CTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCC-CcCcCccccCcC
Confidence 346789999999998888999999999999999999998654 999999987644
No 7
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.45 E-value=3.3e-14 Score=104.58 Aligned_cols=49 Identities=47% Similarity=1.023 Sum_probs=44.4
Q ss_pred CccccccccccccCceeEEec-cCCeecHhHHHHHHhcCCCCCCccccCCc
Q 013394 229 SRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDAR 278 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 278 (444)
+.+|+||+++|..++.++.++ |+|.||..||++|++.+. .||+||+++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-TCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC-SCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCC-cCcCCCCEeE
Confidence 578999999999999999998 999999999999999854 5999998874
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.38 E-value=5.2e-13 Score=113.03 Aligned_cols=59 Identities=31% Similarity=0.620 Sum_probs=46.5
Q ss_pred CccccccccccccCc---------------eeEEeccCCeecHhHHHHHHhc----CCCCCCccccCCcCCCCCCCCC
Q 013394 229 SRTCAICLEDYSVGE---------------KLRILPCRHKFHAFCVDSWLTS----WRTFCPVCKRDARTSTGEPPAS 287 (444)
Q Consensus 229 ~~~C~ICle~~~~~~---------------~~~~lpC~H~FH~~Ci~~Wl~~----~~~~CP~CR~~i~~~~~~~~~~ 287 (444)
+.+|+||++.|..++ .++.++|+|+||..||+.|+.. .+..||+||..+....+..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g 102 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG 102 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCC
Confidence 468999999997653 4558899999999999999952 2446999999988766655443
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.6e-13 Score=109.66 Aligned_cols=51 Identities=29% Similarity=0.719 Sum_probs=40.2
Q ss_pred Cccccccccccc-----------cCceeEEec-cCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 229 SRTCAICLEDYS-----------VGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 229 ~~~C~ICle~~~-----------~~~~~~~lp-C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
+++|+||+++|. .++.++.++ |+|.||..||++||++++ +||+||+++...
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-RCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-BCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-CCCCcCCCcchh
Confidence 456777777774 445567776 999999999999999865 599999987643
No 10
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.7e-13 Score=107.46 Aligned_cols=60 Identities=27% Similarity=0.551 Sum_probs=48.3
Q ss_pred ccCCCccccccccccccCceeEEeccC-----CeecHhHHHHHHhcCC-CCCCccccCCcCCCCCCC
Q 013394 225 DNCTSRTCAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWLTSWR-TFCPVCKRDARTSTGEPP 285 (444)
Q Consensus 225 ~~~~~~~C~ICle~~~~~~~~~~lpC~-----H~FH~~Ci~~Wl~~~~-~~CP~CR~~i~~~~~~~~ 285 (444)
...++..|.||+++|..++.+ ++||+ |.||..||++||..++ .+||+||.++.......+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 334468999999999887776 69996 9999999999998753 469999999876554443
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.37 E-value=4.3e-13 Score=98.47 Aligned_cols=50 Identities=34% Similarity=0.721 Sum_probs=43.0
Q ss_pred CCccccccccccccC-ceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCc
Q 013394 228 TSRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 278 (444)
Q Consensus 228 ~~~~C~ICle~~~~~-~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 278 (444)
++.+|+||++.|..+ +.++.++|+|.||..||++|+... ..||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 357899999999664 467889999999999999999986 45999998874
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.31 E-value=8.6e-13 Score=101.92 Aligned_cols=53 Identities=25% Similarity=0.605 Sum_probs=45.0
Q ss_pred CCccccccccccccC----ceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCCC
Q 013394 228 TSRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 281 (444)
Q Consensus 228 ~~~~C~ICle~~~~~----~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 281 (444)
++.+|+||++.|... +.+..++|+|.||..||++|+..+. .||+||.++....
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKR 65 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCCCCS
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC-CCCCCCCccChhh
Confidence 358899999999763 5668899999999999999999865 5999999887543
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.3e-12 Score=100.14 Aligned_cols=51 Identities=25% Similarity=0.630 Sum_probs=43.3
Q ss_pred CCccccccccccccC----ceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 228 TSRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 228 ~~~~C~ICle~~~~~----~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
+...|+||++.|... +.+..++|+|.||..||++|+..+. .||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS-SCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC-CCCCCCCccCc
Confidence 458999999999764 4558899999999999999999854 59999998753
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=98.45 Aligned_cols=51 Identities=25% Similarity=0.619 Sum_probs=43.7
Q ss_pred CccccccccccccC----ceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 229 SRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 229 ~~~C~ICle~~~~~----~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
+.+|+||++.|..+ +.+..++|+|.||..||++|++.+. .||+||+++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS-BCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC-CCCCCCccCCcc
Confidence 57899999999764 4568899999999999999999854 599999988754
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.28 E-value=1.9e-12 Score=108.73 Aligned_cols=50 Identities=28% Similarity=0.627 Sum_probs=42.1
Q ss_pred CCccccccccccccC---------------ceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCc
Q 013394 228 TSRTCAICLEDYSVG---------------EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 278 (444)
Q Consensus 228 ~~~~C~ICle~~~~~---------------~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 278 (444)
+++.|+||++.|... ..++.++|+|.||..||++||..+. +||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS-BCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC-cCcCCCCcce
Confidence 468899999999854 1367889999999999999999854 5999999854
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.1e-12 Score=99.74 Aligned_cols=50 Identities=32% Similarity=0.857 Sum_probs=42.7
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCCCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 282 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~ 282 (444)
+...|+||++.+.. ..++|+|.||..||.+|+..+. .||+||+++.....
T Consensus 14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHR-NCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCS-SCHHHHHCTTCCCC
T ss_pred CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcC-cCCCcCCcccCCCc
Confidence 45899999999876 7899999999999999999744 59999999876543
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=7.2e-12 Score=97.41 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=43.5
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCCCCCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEP 284 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~ 284 (444)
+...|+||++.|.+. +..++|+|.||..||+.|+..+. .||+||+++.......
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 14 PYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYYSN-RCPKCNIVVHQTQPLS 67 (72)
T ss_dssp GGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHHCS-SCTTTCCCCCSSCSCC
T ss_pred CCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHcCC-cCCCcCcccCcccccc
Confidence 357999999998774 33349999999999999998844 5999999987655443
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.9e-12 Score=100.48 Aligned_cols=49 Identities=31% Similarity=0.633 Sum_probs=42.0
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
++.+|+||++.|... ..++|+|.||..||+.|+..+. .||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 14 TVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGK-RCALCRQEIPED 62 (71)
T ss_dssp SCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSS-BCSSSCCBCCHH
T ss_pred CCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCC-cCcCcCchhCHh
Confidence 458899999998664 7789999999999999999854 599999988654
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.23 E-value=7.1e-12 Score=96.02 Aligned_cols=48 Identities=38% Similarity=0.825 Sum_probs=41.6
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
+..|+||++.+..+ ...++|+|.||..||.+|+..+. .||+||.++..
T Consensus 5 ~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSC-STTTTCCCCCC
T ss_pred CCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcC-cCcCCChhhHh
Confidence 57899999998653 57899999999999999999865 59999998864
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=99.60 Aligned_cols=53 Identities=26% Similarity=0.655 Sum_probs=45.2
Q ss_pred CCccccccccccccCce-eEEeccCCeecHhHHHHHHhcC--CCCCCccccCCcCC
Q 013394 228 TSRTCAICLEDYSVGEK-LRILPCRHKFHAFCVDSWLTSW--RTFCPVCKRDARTS 280 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~-~~~lpC~H~FH~~Ci~~Wl~~~--~~~CP~CR~~i~~~ 280 (444)
+..+|+||++.|...+. .+.++|+|.||..||..|+..+ ...||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 45889999999988664 7889999999999999999975 35699999987654
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1e-11 Score=94.81 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=42.0
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
+...|+||++.+..+ ..++|||.||..||.+|+...+..||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 357899999999876 34799999999999999965555699999988654
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.7e-11 Score=95.18 Aligned_cols=50 Identities=26% Similarity=0.545 Sum_probs=41.6
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhc--CCCCCCccccCCcCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVCKRDARTS 280 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~--~~~~CP~CR~~i~~~ 280 (444)
+...|+||++.|... ..++|+|.||..||..|++. .+..||+||+++...
T Consensus 19 ~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred cCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 458999999998754 66799999999999999973 344699999988654
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.16 E-value=3.1e-11 Score=94.38 Aligned_cols=49 Identities=20% Similarity=0.573 Sum_probs=41.2
Q ss_pred CCccccccccccccCceeEEec-cCCeecHhHHHHHHhcCC-CCCCccccCCcC
Q 013394 228 TSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWR-TFCPVCKRDART 279 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~~~~-~~CP~CR~~i~~ 279 (444)
+...|+||++.|..+ ..++ |+|.||..||+.|+.... ..||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 357999999999876 6699 999999999999998742 469999997543
No 24
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.16 E-value=3.7e-12 Score=108.75 Aligned_cols=51 Identities=29% Similarity=0.643 Sum_probs=1.0
Q ss_pred CCccccccccccccC-------------c--eeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 228 TSRTCAICLEDYSVG-------------E--KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 228 ~~~~C~ICle~~~~~-------------~--~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
.++.|+||+++|... + .+..++|+|.||..||++||..+. +||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEF 112 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-cCCCCCCeeee
Confidence 458999999999752 2 233458999999999999999855 59999998643
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.2e-11 Score=96.75 Aligned_cols=47 Identities=21% Similarity=0.499 Sum_probs=40.6
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCc
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 278 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 278 (444)
....|+||++.|... .+++|+|.||..||..|+.... .||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATP-RCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCS-BCSSSCCBCC
T ss_pred CCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCC-cCCCcCcccc
Confidence 457899999998664 5789999999999999998744 5999999885
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=2.7e-11 Score=92.15 Aligned_cols=53 Identities=26% Similarity=0.503 Sum_probs=43.6
Q ss_pred Ccccccccc-ccccCce-eEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCCC
Q 013394 229 SRTCAICLE-DYSVGEK-LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 281 (444)
Q Consensus 229 ~~~C~ICle-~~~~~~~-~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 281 (444)
+..|+||++ .|..+.. ...++|||.||..||++|+.+.+..||+||+++....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 578999999 7777653 3567999999999999998876667999999887543
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.12 E-value=4.4e-11 Score=94.15 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=42.7
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
+...|+||++.|.++ ..++|||.||..||..|+...+..||+||+++...
T Consensus 7 ~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 458999999999765 66899999999999999987555699999988643
No 28
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=5.1e-11 Score=93.40 Aligned_cols=53 Identities=23% Similarity=0.466 Sum_probs=43.2
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcC-CCCCCccccCCcCCCCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPVCKRDARTSTGE 283 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~-~~~CP~CR~~i~~~~~~ 283 (444)
..+|+||++.+..+++. ..|+|.||..||++||+++ +.+||+||+++..+.++
T Consensus 15 i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred CCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence 47899999999877544 3899999999999999875 25699999987755444
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=9.7e-11 Score=88.39 Aligned_cols=43 Identities=26% Similarity=0.561 Sum_probs=36.8
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhc--CCCCCCcc
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVC 273 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~--~~~~CP~C 273 (444)
++..|+||++.|.+. ..++|+|.||..||++|++. .+..||+|
T Consensus 19 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 458999999999875 66799999999999999985 34469998
No 30
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.07 E-value=4.6e-11 Score=104.73 Aligned_cols=47 Identities=30% Similarity=0.890 Sum_probs=40.6
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
+..|+||++.|..+ ..+||||.||..||..|+..+. .||+||.++..
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKI-ECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCS-BCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCC-cCCCCCCcCCC
Confidence 36899999998764 7789999999999999999855 49999998753
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.07 E-value=1.1e-10 Score=92.76 Aligned_cols=50 Identities=30% Similarity=0.521 Sum_probs=42.4
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcC-----CCCCCccccCCcCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-----RTFCPVCKRDARTS 280 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~-----~~~CP~CR~~i~~~ 280 (444)
++..|+||++.|..+ ..++|+|.||..||..|+... ...||+||.++...
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 458999999998776 578999999999999999873 45699999988653
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.07 E-value=5e-11 Score=98.78 Aligned_cols=49 Identities=27% Similarity=0.560 Sum_probs=41.4
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
...|+||++.|..+ +..++|||.||..||..|+...+..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCc--cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 47899999999754 33389999999999999999865569999998854
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=7.9e-11 Score=101.36 Aligned_cols=53 Identities=25% Similarity=0.605 Sum_probs=45.0
Q ss_pred CCccccccccccccC----ceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCCC
Q 013394 228 TSRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 281 (444)
Q Consensus 228 ~~~~C~ICle~~~~~----~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 281 (444)
+..+|+||++.|..+ +.++.++|||.||..||++|++.++ .||+||+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-BCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-CCCCCCCcCcccc
Confidence 357899999999764 5668899999999999999999865 4999999886543
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.3e-10 Score=92.23 Aligned_cols=50 Identities=30% Similarity=0.585 Sum_probs=41.9
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhc-----CCCCCCccccCCcCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-----WRTFCPVCKRDARTS 280 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~-----~~~~CP~CR~~i~~~ 280 (444)
+...|+||++.|... ..++|+|.||..||..|+.. ....||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 358999999999775 55799999999999999987 244599999988753
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.03 E-value=3.8e-11 Score=94.54 Aligned_cols=49 Identities=29% Similarity=0.511 Sum_probs=41.6
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcC------CCCCCccccCCcC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW------RTFCPVCKRDART 279 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~------~~~CP~CR~~i~~ 279 (444)
+...|+||++.|... ..++|||.||..||..|+... ...||+||.++..
T Consensus 11 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 458899999999775 458999999999999999863 4569999998865
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.1e-10 Score=86.33 Aligned_cols=43 Identities=33% Similarity=0.842 Sum_probs=36.3
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhc--CCCCCCcc
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVC 273 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~--~~~~CP~C 273 (444)
+...|+||++.|..+ ..++|+|.||..||++|+.. .+..||+|
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 457999999999876 55899999999999999754 45569998
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.01 E-value=2e-10 Score=98.62 Aligned_cols=48 Identities=23% Similarity=0.411 Sum_probs=41.8
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
...|+||++.|..+ ..++|||.||..||..|+..+...||+||.++..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47899999999865 6789999999999999998656569999998865
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.01 E-value=2.4e-10 Score=92.77 Aligned_cols=48 Identities=21% Similarity=0.575 Sum_probs=41.0
Q ss_pred CCccccccccccccCceeEEec-cCCeecHhHHHHHHhcCC-CCCCccccCCc
Q 013394 228 TSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWR-TFCPVCKRDAR 278 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~~~~-~~CP~CR~~i~ 278 (444)
++..|+||++.|..+ ..++ |||.||..||..|+.... ..||+||.++.
T Consensus 12 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 468999999999876 6889 999999999999997643 46999999863
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.96 E-value=2.9e-10 Score=93.74 Aligned_cols=47 Identities=26% Similarity=0.753 Sum_probs=40.0
Q ss_pred CccccccccccccCceeEEe-ccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
...|+||++.|..+ ..+ +|||.||..||..|+..+. .||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKT-QCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCCG
T ss_pred CCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCC-CCCCCCCcCCh
Confidence 47899999998764 455 8999999999999999754 59999998765
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.95 E-value=3.4e-10 Score=97.36 Aligned_cols=52 Identities=25% Similarity=0.618 Sum_probs=43.9
Q ss_pred CCccccccccccccC----ceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 228 TSRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 228 ~~~~C~ICle~~~~~----~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
+...|+||++.|... +....++|+|.||..||++|++.++ +||+||.++...
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-CCCCCCCcCChh
Confidence 357899999999763 4457889999999999999999865 499999988654
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.95 E-value=3.5e-10 Score=94.74 Aligned_cols=49 Identities=22% Similarity=0.663 Sum_probs=40.8
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
+..|+||++.|..+ +..++|||.||..||..|+... ..||+||..+...
T Consensus 15 ~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSS
T ss_pred cCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhC-CcCcCCCcccccc
Confidence 47899999998764 3334999999999999999985 4599999988653
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.93 E-value=5.4e-10 Score=99.48 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=42.6
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
...|+||++.|..+ ..++|+|.||..||..|+......||+||.++...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 47899999998765 56899999999999999997665699999998764
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.93 E-value=4.3e-10 Score=101.32 Aligned_cols=49 Identities=29% Similarity=0.600 Sum_probs=41.2
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
...|+||++.|... +..++|||.||..||+.|+...+..||+||.++..
T Consensus 54 ~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 46899999998764 44459999999999999999755669999998854
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.90 E-value=1.1e-09 Score=86.66 Aligned_cols=54 Identities=20% Similarity=0.613 Sum_probs=42.4
Q ss_pred CCccccccccccccCceeEEec--cCCeecHhHHHHHHhcCCCCCCccccCCcCCCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 282 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lp--C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~ 282 (444)
++.+|+||+|.+...+. +.+| |||.||..|+..|+......||+||+++.....
T Consensus 10 ~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 45799999999865432 3444 999999999999986655679999998876443
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.89 E-value=2.9e-10 Score=96.29 Aligned_cols=48 Identities=29% Similarity=0.648 Sum_probs=41.7
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
+..|+||++.|... ..++|||.||..||..|+...+..||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 47899999999865 6789999999999999998756679999998863
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=7e-10 Score=93.09 Aligned_cols=49 Identities=33% Similarity=0.648 Sum_probs=41.1
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCC--CCCCccccCCcCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR--TFCPVCKRDARTS 280 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~--~~CP~CR~~i~~~ 280 (444)
...|+||++.|..+ ..++|||.||..||..|+.... ..||+||.++...
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 36899999999765 4579999999999999998643 3599999988754
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.88 E-value=6.6e-10 Score=94.67 Aligned_cols=49 Identities=24% Similarity=0.455 Sum_probs=42.2
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
...|+||++.|..+ ..++|||.||..||.+|+......||+||.++...
T Consensus 18 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 18 KYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 47999999998765 66899999999999999998664699999988653
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.87 E-value=9.8e-10 Score=93.13 Aligned_cols=50 Identities=24% Similarity=0.553 Sum_probs=42.2
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 281 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 281 (444)
...|+||++.|..+ ..++|||.||..||..|+......||+||.++....
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 47899999998764 558999999999999999985556999999887543
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.83 E-value=1e-09 Score=96.69 Aligned_cols=49 Identities=22% Similarity=0.489 Sum_probs=42.2
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
+...|+||++.|..+ ..++|||.||..||.+|+......||+||.++..
T Consensus 30 ~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 358999999999876 5689999999999999998766569999998743
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.82 E-value=1.9e-09 Score=81.96 Aligned_cols=46 Identities=24% Similarity=0.469 Sum_probs=38.1
Q ss_pred CccccccccccccCceeEEe--ccCCe-ecHhHHHHHHhcCCCCCCccccCCc
Q 013394 229 SRTCAICLEDYSVGEKLRIL--PCRHK-FHAFCVDSWLTSWRTFCPVCKRDAR 278 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~l--pC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~ 278 (444)
+.+|.||++.+.+. ..+ ||||. |+..|++.|.+.+. .||+||+++.
T Consensus 8 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~-~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNK-PCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTC-CCTTTCCCCC
T ss_pred cCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCC-cCCCcCcchh
Confidence 47899999986543 445 99999 89999999998755 4999999885
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=9.6e-10 Score=81.28 Aligned_cols=46 Identities=22% Similarity=0.582 Sum_probs=38.6
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
+...|+||++.|... +.|+|+|.||..||..| ...||+||+++...
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCe---EEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 457899999999876 67899999999999885 34599999988653
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.79 E-value=2.2e-09 Score=108.81 Aligned_cols=49 Identities=31% Similarity=0.712 Sum_probs=41.7
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
..+|+||++.+.. ...+||||.||..||..|+......||+||.++...
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4799999999855 478999999999999999995455699999988754
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.76 E-value=3.6e-09 Score=80.18 Aligned_cols=47 Identities=21% Similarity=0.524 Sum_probs=38.2
Q ss_pred CccccccccccccCceeEEe--ccCCe-ecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRIL--PCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~l--pC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
+..|.||++.+.+. ..+ ||||. |+..|+..|.+.. ..||+||+++..
T Consensus 7 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhhc
Confidence 57899999986543 445 99999 9999999999875 459999998853
No 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.75 E-value=4.5e-09 Score=84.47 Aligned_cols=48 Identities=8% Similarity=-0.101 Sum_probs=42.0
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
+...|+||++.|+++ .+++|||.|+..||..|+..+ .+||+||.++..
T Consensus 13 ~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~-~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNS-PTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred hheECcccCchhcCC---eECCCCCEECHHHHHHHHhcC-CCCCCCcCCCCh
Confidence 358999999999886 788999999999999999975 459999988754
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.73 E-value=4.4e-09 Score=87.23 Aligned_cols=48 Identities=8% Similarity=-0.083 Sum_probs=42.1
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
+...|+||++.|.++ .+++|||.|+..||..|+..+ .+||+||.++..
T Consensus 28 ~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~-~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNS-PTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSC-SBCSSSCCBCCT
T ss_pred HhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcC-CCCCCCCCCCCh
Confidence 358999999999887 788999999999999999964 559999998764
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.72 E-value=5.2e-09 Score=86.47 Aligned_cols=49 Identities=12% Similarity=-0.033 Sum_probs=42.5
Q ss_pred CCccccccccccccCceeEEeccC-CeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCR-HKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~-H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
+...|+||++.|+++ .+++|| |.|+..||.+|+..+ .+||+||.++...
T Consensus 21 ~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~-~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSD-QTDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTS-CBCTTTCSBCCTT
T ss_pred HhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhC-CCCCCCCCCCChh
Confidence 358999999999887 778999 999999999999974 4599999988653
No 57
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.68 E-value=5.2e-08 Score=100.39 Aligned_cols=91 Identities=31% Similarity=0.384 Sum_probs=67.4
Q ss_pred CCceEEEEecCCcCCCCCCCCCCcccCCCcceEEEEecCCCCHHHHHHHHHHcCCeEEEEeccCCCcceeeecCCCCCce
Q 013394 47 SGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIK 126 (444)
Q Consensus 47 ~~~~G~L~~~~p~~aC~~l~~~~~~~~~~~~~ivLV~RG~CsF~~Kv~~Aq~aGA~avII~n~~~~~~~~~~~g~~~~i~ 126 (444)
.+++|.|+...-- ..+++ . ..++++|||||+||+|.|.+|+++|+++||+|||||++.+.. .....+......
T Consensus 91 g~v~a~lv~~~~G-~~~D~--~---~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~-~~g~~~~~~~~~ 163 (421)
T 2ek8_A 91 SDVTAELVYVGLG-TTADV--A---GKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGK-LNGTLGGSDASF 163 (421)
T ss_dssp EEEEEEEEECTTC-CTTTT--T---TSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSC-CCCBCSSCCTTC
T ss_pred CCcceEEEECCCC-Chhhc--C---CCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcc-cccccCCCCCCC
Confidence 4678888765321 11221 1 225689999999999999999999999999999999987542 222233334568
Q ss_pred EEEEEEeccccchhhhhc
Q 013394 127 IHAVFVSKASGEKLKQYA 144 (444)
Q Consensus 127 Ip~v~Is~~~G~~L~~~l 144 (444)
||++.|+.++++.|++.+
T Consensus 164 IP~~~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 164 VAAVGITKQEGDALAANL 181 (421)
T ss_dssp CEEEEECHHHHHHHHHHH
T ss_pred ccEEEeCHHHHHHHHHHh
Confidence 999999999999988776
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.66 E-value=8.4e-09 Score=99.59 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=42.9
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
....|+||++.|.++ .++||||.||..||..|+..+..+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 468999999999886 7899999999999999998755559999998854
No 59
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.64 E-value=5.7e-09 Score=88.69 Aligned_cols=45 Identities=31% Similarity=0.543 Sum_probs=38.8
Q ss_pred CccccccccccccCceeEEe-ccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
...|+||++.|..+ ..+ +|||.||..||..|+. ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc
Confidence 47899999999776 566 8999999999999998 359999998743
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.61 E-value=9.7e-09 Score=80.23 Aligned_cols=43 Identities=23% Similarity=0.641 Sum_probs=36.6
Q ss_pred CccccccccccccCceeEEeccCCe-ecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
+..|.||++.+.+ ...+||||. ||..|+..| ..||+||.++..
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 4789999998765 477899999 999999999 349999998754
No 61
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.58 E-value=2.5e-08 Score=74.90 Aligned_cols=48 Identities=29% Similarity=0.654 Sum_probs=37.5
Q ss_pred CCccccccccccccCceeEEeccC--C---eecHhHHHHHHhc-CCCCCCccccCCc
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCR--H---KFHAFCVDSWLTS-WRTFCPVCKRDAR 278 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~--H---~FH~~Ci~~Wl~~-~~~~CP~CR~~i~ 278 (444)
+...|.||+++. ++++ ++||. | .||..|+++|+.. ++.+||+||.++.
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 457899999983 3344 68965 4 8999999999975 3566999998764
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.56 E-value=2.5e-08 Score=90.02 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=42.5
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
+...|+||++.|..+ ..++|||.||..||.+|+......||+||.++...
T Consensus 17 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 358999999998775 56899999999999999987554699999988653
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.55 E-value=8.2e-09 Score=102.16 Aligned_cols=53 Identities=28% Similarity=0.619 Sum_probs=40.7
Q ss_pred CCCccccccccccccCcee----E-EeccCCeecHhHHHHHHhcCC----------CCCCccccCCcC
Q 013394 227 CTSRTCAICLEDYSVGEKL----R-ILPCRHKFHAFCVDSWLTSWR----------TFCPVCKRDART 279 (444)
Q Consensus 227 ~~~~~C~ICle~~~~~~~~----~-~lpC~H~FH~~Ci~~Wl~~~~----------~~CP~CR~~i~~ 279 (444)
....+|+||++.+..+.++ . -..|+|.||..||.+||.+.. ..||.||++|..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3467999999999873322 2 246999999999999998631 249999998764
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=4.2e-08 Score=80.19 Aligned_cols=46 Identities=22% Similarity=0.495 Sum_probs=38.7
Q ss_pred CCccccccccccccCceeEEec-cCCeecHhHHHHHHhcC-----CCCCCc--cccC
Q 013394 228 TSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSW-----RTFCPV--CKRD 276 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~~~-----~~~CP~--CR~~ 276 (444)
....|+||++.|.++ .+++ |||.|+..||..|+..+ ..+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 357899999999876 6776 99999999999999864 246999 9865
No 65
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=98.52 E-value=1.5e-07 Score=97.71 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=74.8
Q ss_pred cccCCCCCCCCceEEEEecCCcCCCCCCCCCCcccCCCcceEEEEecCCCC---------HHHHH----HHHHHcCCeEE
Q 013394 38 ANFAPAIRGSGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCS---------FEDKV----RNAQKAGFEAA 104 (444)
Q Consensus 38 A~Fg~~~~~~~~~G~L~~~~p~~aC~~l~~~~~~~~~~~~~ivLV~RG~Cs---------F~~Kv----~~Aq~aGA~av 104 (444)
..+++..+..+++|.|+.....+.|.... ..+++||||||.||.|. |..|. .+|+++||+|+
T Consensus 95 l~~s~~tp~~~vta~lV~v~~~~~~~~~~-----~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~av 169 (444)
T 3iib_A 95 LGGSIATPAQGLSATIVRFDTLQDLQNAE-----AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGI 169 (444)
T ss_dssp CBTCCCCCTTCEEEEEEEESSHHHHHTSC-----TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred ccCCCCCCCCCeEEEEEecCCHHHHhhcc-----ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEE
Confidence 34566566678999998887666665431 23567999999999995 77774 57999999999
Q ss_pred EEeccCCCcc---eeeecC-CCCCceEEEEEEeccccchhhhhcCcc
Q 013394 105 IVYDNEDDGV---LVAMAG-NSAGIKIHAVFVSKASGEKLKQYAGST 147 (444)
Q Consensus 105 II~n~~~~~~---~~~~~g-~~~~i~Ip~v~Is~~~G~~L~~~l~~~ 147 (444)
||+|+..+.. .....+ ......||++.|+.++|+.|++.+..+
T Consensus 170 Ii~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g 216 (444)
T 3iib_A 170 IIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRD 216 (444)
T ss_dssp EEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTT
T ss_pred EEEccCCcccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCC
Confidence 9998754321 111112 223468999999999999998876543
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.49 E-value=4.4e-08 Score=89.43 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=42.2
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
....|+||++.|.++ .++||||.|+..||..|+..+..+||+||.++..
T Consensus 105 ~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 458999999999876 7789999999999999998754469999988754
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1e-07 Score=73.28 Aligned_cols=45 Identities=31% Similarity=0.790 Sum_probs=36.7
Q ss_pred CCccccccccccccCceeEEeccCCe-ecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
+...|.||++.+.. +..+||+|. |+..|+.. .+ .||+||++|...
T Consensus 14 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~-~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQ-QCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CS-SCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CC-CCCCCCcchhce
Confidence 45899999998654 588999999 99999984 23 499999988653
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.45 E-value=7.3e-08 Score=78.56 Aligned_cols=48 Identities=27% Similarity=0.736 Sum_probs=39.9
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcC-------CCCCCc--cccC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-------RTFCPV--CKRD 276 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~-------~~~CP~--CR~~ 276 (444)
..+|.||++++..++.+...+|+|.||..|+..+++.. ...||. ||..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 57899999999877666666899999999999998741 235999 9987
No 69
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=6.8e-08 Score=75.48 Aligned_cols=43 Identities=23% Similarity=0.585 Sum_probs=35.2
Q ss_pred CccccccccccccCceeEEeccCCe-ecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
+.+|.||++.+... ..+||+|. ||..|+..+ ..||+||+++..
T Consensus 25 ~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE---EEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 36899999987654 67899999 999999642 349999998865
No 70
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.37 E-value=2.5e-07 Score=101.11 Aligned_cols=104 Identities=24% Similarity=0.240 Sum_probs=69.8
Q ss_pred cCCCCCCCCceEEEEecCCcCCCCCCCCCCc-c-cCCCcceEEEEecCCCCHHHHHHHHHHcCCeEEEEeccCCC-----
Q 013394 40 FAPAIRGSGDCGVLYVAEPLDACSNLTSKVE-K-VSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDD----- 112 (444)
Q Consensus 40 Fg~~~~~~~~~G~L~~~~p~~aC~~l~~~~~-~-~~~~~~~ivLV~RG~CsF~~Kv~~Aq~aGA~avII~n~~~~----- 112 (444)
|.+-.+..+++|.|+.+. .||...-.... + ..++.|+||||+||+|+|.+|+++|+++||+|||||++..+
T Consensus 118 f~ays~~G~v~g~lV~v~--~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g 195 (707)
T 3fed_A 118 YNAFSAQGMPEGDLVYVN--YARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPE 195 (707)
T ss_dssp CCTTCCCBCCEECEEECT--TCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTT
T ss_pred ccccCCCCceEEEEEEec--CCchhhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccc
Confidence 433334456889998874 45532111000 1 33578999999999999999999999999999999986221
Q ss_pred -----------------cceeee--cCCC--------------------CCceEEEEEEeccccchhhhhcC
Q 013394 113 -----------------GVLVAM--AGNS--------------------AGIKIHAVFVSKASGEKLKQYAG 145 (444)
Q Consensus 113 -----------------~~~~~~--~g~~--------------------~~i~Ip~v~Is~~~G~~L~~~l~ 145 (444)
+.+..+ .|+. ....||++-|+..+|+.|++.++
T Consensus 196 ~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~ 267 (707)
T 3fed_A 196 VQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLG 267 (707)
T ss_dssp CCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBC
T ss_pred cccCCCCccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhc
Confidence 000000 1211 12479999999999999987654
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.27 E-value=1.7e-07 Score=74.14 Aligned_cols=44 Identities=25% Similarity=0.629 Sum_probs=36.7
Q ss_pred CccccccccccccCceeEEeccCCe-ecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
+..|.||++.+.. ...+||||. |+..|+..| . .||+||.++...
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~-~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----Q-SCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----S-BCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----C-cCCCCCchhhCe
Confidence 3689999998655 578999999 999999987 2 499999988654
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.26 E-value=3.3e-07 Score=68.91 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=41.6
Q ss_pred CccccccccccccCceeEEe-ccCCeecHhHHHHHHhcCCCCCCccccCCcCCCC
Q 013394 229 SRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 282 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~ 282 (444)
...|+||++.|.++ .++ +|||+|...||++||..+.+ ||++++++.....
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~-cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSB-CTTTCCBCCGGGC
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCC-CcCCcCCCChhhc
Confidence 36899999999865 566 89999999999999998655 9999998865443
No 73
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.25 E-value=8.5e-07 Score=95.91 Aligned_cols=95 Identities=20% Similarity=0.194 Sum_probs=65.0
Q ss_pred CCceEEEEecCCcCCCCCCCCCCcccCCCcceEEEEecCCCCHHHHHHHHHHcCCeEEEEeccCCCc-c------eee--
Q 013394 47 SGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDG-V------LVA-- 117 (444)
Q Consensus 47 ~~~~G~L~~~~p~~aC~~l~~~~~~~~~~~~~ivLV~RG~CsF~~Kv~~Aq~aGA~avII~n~~~~~-~------~~~-- 117 (444)
..++|.||.+. .||... ..... -+++||||||+||+|.|.+|+++|+++||+|||||++..+. . ..+
T Consensus 106 g~v~g~lV~vg--~G~~~D-~~~l~-vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~ 181 (640)
T 3kas_A 106 ATVTGKLVHAN--FGTKKD-FEDLY-TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHA 181 (640)
T ss_dssp EEEEECEEECT--TCCHHH-HHTCS-SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEEC
T ss_pred CceEEEEEEec--CCChhh-HHHhh-cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEecccccccccccccccccc
Confidence 44778887763 444321 11000 25689999999999999999999999999999999975421 1 000
Q ss_pred --ecCC-------------------CCCceEEEEEEeccccchhhhhcC
Q 013394 118 --MAGN-------------------SAGIKIHAVFVSKASGEKLKQYAG 145 (444)
Q Consensus 118 --~~g~-------------------~~~i~Ip~v~Is~~~G~~L~~~l~ 145 (444)
..|+ .....||++.|+.++++.|.+.++
T Consensus 182 ~~~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 182 HLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CSSSSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred ccCCCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 0011 012369999999999999877543
No 74
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.16 E-value=6.5e-07 Score=85.89 Aligned_cols=49 Identities=24% Similarity=0.507 Sum_probs=40.6
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcC-CCCCCc--cccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPV--CKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~-~~~CP~--CR~~i~~ 279 (444)
...|+||++.|..+ |+.+.|||.|+..||..|+..+ ...||+ ||+.+..
T Consensus 181 el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 181 ELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 57899999999766 5556899999999999999863 346999 9987654
No 75
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.11 E-value=5.9e-07 Score=90.19 Aligned_cols=44 Identities=30% Similarity=0.764 Sum_probs=37.3
Q ss_pred CCccccccccccccCceeEEeccCCe-ecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
++..|+||++.+.. ...+||||. ||..|+..| . .||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~-~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----R-KCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----S-BCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----C-cCCCCCCCccC
Confidence 35799999999865 477899999 999999988 3 49999998754
No 76
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.06 E-value=2.4e-06 Score=69.77 Aligned_cols=48 Identities=23% Similarity=0.425 Sum_probs=39.1
Q ss_pred cccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 231 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 231 ~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
.|.+|--.+ ....|.+||+|+||.+|+..|.++....||+|+.+|...
T Consensus 3 fC~~C~~Pi--~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBC--SEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCe--EEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 477786554 345799999999999999999987666799999988654
No 77
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.67 E-value=5.5e-05 Score=78.16 Aligned_cols=86 Identities=24% Similarity=0.302 Sum_probs=62.9
Q ss_pred CCCCCCCCCCcccCCCcceEEEEecCCC-----CHHHHHHHHHHcCCeEEEEeccCCCccee--eecCCCCCceEEEEEE
Q 013394 60 DACSNLTSKVEKVSNMSSAFVLTIRGGC-----SFEDKVRNAQKAGFEAAIVYDNEDDGVLV--AMAGNSAGIKIHAVFV 132 (444)
Q Consensus 60 ~aC~~l~~~~~~~~~~~~~ivLV~RG~C-----sF~~Kv~~Aq~aGA~avII~n~~~~~~~~--~~~g~~~~i~Ip~v~I 132 (444)
++|.+... ..+..++++||+|++||.| .|.+|+.+|+++||+++||||+.+..... ..........||+++|
T Consensus 258 ~~C~~~~~-~~~~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v 336 (441)
T 1y9z_A 258 AECTVNGT-SFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSV 336 (441)
T ss_dssp EEEEEETT-EEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEE
T ss_pred hccccccc-cccCCCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEE
Confidence 45664421 1233467899999999987 89999999999999999999886532111 1111223457999999
Q ss_pred eccccchhhhhcCc
Q 013394 133 SKASGEKLKQYAGS 146 (444)
Q Consensus 133 s~~~G~~L~~~l~~ 146 (444)
+.++|+.|+++++.
T Consensus 337 ~~~~g~~l~~~~~~ 350 (441)
T 1y9z_A 337 DRATGLALKAKLGQ 350 (441)
T ss_dssp CHHHHHHHHTTTTS
T ss_pred eHHHHHHHHHHhcC
Confidence 99999999988765
No 78
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.66 E-value=2.3e-05 Score=74.62 Aligned_cols=53 Identities=23% Similarity=0.460 Sum_probs=42.0
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCC-CCCCccccCCcCCCCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR-TFCPVCKRDARTSTGE 283 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~-~~CP~CR~~i~~~~~~ 283 (444)
...|.||.+-...+.++ -.|+|.||..|++.|+..+. ..||.|+.+.....+.
T Consensus 180 i~~C~iC~~iv~~g~~C--~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp CCBCTTTCSBCSSCEEC--SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred CCcCcchhhHHhCCccc--CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence 57899999998887433 33999999999999998743 4699999987665444
No 79
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=97.64 E-value=3.5e-05 Score=83.61 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=66.5
Q ss_pred EEEEecCCcCCCCCCCCCCcccCCCcceEEEEecCCCCHHHHHHHHHHcCCeEEEEeccCCCcceeeecCCCCCceEEEE
Q 013394 51 GVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAV 130 (444)
Q Consensus 51 G~L~~~~p~~aC~~l~~~~~~~~~~~~~ivLV~RG~CsF~~Kv~~Aq~aGA~avII~n~~~~~~~~~~~g~~~~i~Ip~v 130 (444)
-.|+.+...+.|.+....+.. -+++++|||++||.|.|.+|..+++++||+++|++|+... +. .....+|++
T Consensus 259 ~plv~~~~~~~C~~~~l~~~~-vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~--~~-----~~~~~~P~~ 330 (649)
T 3i6s_A 259 SPVIYNKTLSDCSSEELLSQV-ENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGV--FR-----SATFPNPGV 330 (649)
T ss_dssp EEEECCTTTTTCCCHHHHTTS-SSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGGG--GG-----CCCCCSCEE
T ss_pred eeeEecccccccccccccccc-cccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCccc--cc-----cccCcCCEE
Confidence 345555567789875322211 1237999999999999999999999999999999998622 11 123478999
Q ss_pred EEeccccchhhhhcCc
Q 013394 131 FVSKASGEKLKQYAGS 146 (444)
Q Consensus 131 ~Is~~~G~~L~~~l~~ 146 (444)
+|+.++|+.|++++..
T Consensus 331 ~v~~~~g~~i~~yi~s 346 (649)
T 3i6s_A 331 VVNKKEGKQVINYVKN 346 (649)
T ss_dssp EECHHHHHHHHHHHHT
T ss_pred EEcHHHHHHHHHHHhc
Confidence 9999999999987653
No 80
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=97.58 E-value=8.5e-05 Score=83.73 Aligned_cols=75 Identities=28% Similarity=0.468 Sum_probs=58.7
Q ss_pred CCCCCCCCCCcccCCCcceEEEEecCCCCHHHHHHHHHHcCCeEEEEeccCCCcceeeecCCCCCceEEEEEEeccccch
Q 013394 60 DACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEK 139 (444)
Q Consensus 60 ~aC~~l~~~~~~~~~~~~~ivLV~RG~CsF~~Kv~~Aq~aGA~avII~n~~~~~~~~~~~g~~~~i~Ip~v~Is~~~G~~ 139 (444)
++|.+... .+++++|||++||.|+|.+|+.+|+++||.++|+||+..+.....+. ....||+++|+.++|+.
T Consensus 269 ~g~~~~~~-----~~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~---~~~~iP~~~i~~~~g~~ 340 (926)
T 1xf1_A 269 RGTKEDDF-----KDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELP---NVDQMPAAFISRKDGLL 340 (926)
T ss_dssp TSCSTTTT-----TTCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECC---CSTTCCEEEECHHHHHH
T ss_pred CCCCccch-----hhcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccC---ccccccEEEEeHHHHHH
Confidence 46764322 35689999999999999999999999999999999987654333221 23578999999999987
Q ss_pred hhh
Q 013394 140 LKQ 142 (444)
Q Consensus 140 L~~ 142 (444)
|+.
T Consensus 341 l~~ 343 (926)
T 1xf1_A 341 LKD 343 (926)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 81
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.70 E-value=0.022 Score=43.09 Aligned_cols=47 Identities=28% Similarity=0.470 Sum_probs=34.0
Q ss_pred CCCccccccccccccCceeEEeccCCeecHhHHHHHHhcC---CCCCCccccC
Q 013394 227 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW---RTFCPVCKRD 276 (444)
Q Consensus 227 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~---~~~CP~CR~~ 276 (444)
..+..|.||.+. ++-+..=.|...||..|+++.|... .-.||.|+..
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 345789999853 4444433489999999999988752 3469999754
No 82
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.03 E-value=0.045 Score=44.23 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=27.1
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHH
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW 262 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~W 262 (444)
+..|.||++++...-....+.|+|.|+..|+..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4689999987544444556899999999999984
No 83
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=90.14 E-value=0.41 Score=38.44 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=37.7
Q ss_pred CCccccccccccccCceeEEecc-CCeecHhHHHHHHhcCCCCCCccccCCcCCCCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPC-RHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 283 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC-~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~ 283 (444)
+...|-.|+-+.+. .+.| .|.+|..|+..-|.... .||+|+++++.....
T Consensus 27 G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~Sd-rCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSN-RCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSS-EETTTTEECCCCSCT
T ss_pred CcccChhhccccCC-----eeeecchhhHHHHHHHHHhhcc-CCcccCCcCCcceec
Confidence 35789999976432 3446 69999999999888744 599999988765443
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=89.93 E-value=0.16 Score=39.88 Aligned_cols=35 Identities=17% Similarity=0.471 Sum_probs=24.6
Q ss_pred CCCccccccccccccCceeEEeccCCeecHhHHHHH
Q 013394 227 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW 262 (444)
Q Consensus 227 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~W 262 (444)
..+..|.||- .|..++....=-|+-+||..|+++-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 3578999994 5555533222227899999999996
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.12 E-value=0.15 Score=39.14 Aligned_cols=51 Identities=20% Similarity=0.395 Sum_probs=33.6
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhc---CCCCCCccccCCc
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRDAR 278 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~i~ 278 (444)
+...|.||.........+..=-|.-.||..|+..-+.. ..-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34679999876532222222238889999999865543 2446999987654
No 86
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=86.72 E-value=0.3 Score=36.04 Aligned_cols=46 Identities=24% Similarity=0.671 Sum_probs=32.4
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhc---CCCCCCccccC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 276 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~ 276 (444)
.+..|.||.+. ++.+..-.|...||..|+..-+.. ..-.||.|+..
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 46789999873 443333348889999999986543 24469999763
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=85.70 E-value=0.15 Score=37.70 Aligned_cols=49 Identities=27% Similarity=0.596 Sum_probs=32.9
Q ss_pred cCCCccccccccccccCceeEEeccCCeecHhHHHHHHhc---CCCCCCccccCC
Q 013394 226 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRDA 277 (444)
Q Consensus 226 ~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~i 277 (444)
+.++..|.||.+. ++-+..-.|...||..|+.+-|.. ..-.||.|+...
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3456889999863 333333338889999999865543 234699997654
No 88
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=85.47 E-value=0.16 Score=46.80 Aligned_cols=48 Identities=27% Similarity=0.493 Sum_probs=32.7
Q ss_pred cCCCccccccccccccCceeEEeccCCeecHhHHHHHHhc---CCCCCCccccC
Q 013394 226 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 276 (444)
Q Consensus 226 ~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~ 276 (444)
+.+++.|.+|.+. ++-+..=.|...||..|+.+.|.. ....||.|+..
T Consensus 4 d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp CSSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 3456889999853 332222238899999999887654 23469999764
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=85.20 E-value=0.75 Score=39.93 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=33.6
Q ss_pred ccCCCccccccccccccCceeEEeccCCeecHhHHHHHHh----------cCCCCCCcccc
Q 013394 225 DNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT----------SWRTFCPVCKR 275 (444)
Q Consensus 225 ~~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~----------~~~~~CP~CR~ 275 (444)
++..++.|.||.+. ++-+..=.|...||..||++=+. .....||+|+.
T Consensus 59 ~Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34457899999874 44333334889999999997552 23456999964
No 90
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.22 E-value=0.35 Score=35.80 Aligned_cols=48 Identities=29% Similarity=0.493 Sum_probs=32.9
Q ss_pred CCccccccccccccCcee-EEeccCCeecHhHHHHHHh----cCCCCCCcccc
Q 013394 228 TSRTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLT----SWRTFCPVCKR 275 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~-~~lpC~H~FH~~Ci~~Wl~----~~~~~CP~CR~ 275 (444)
+...|+||...+..++.. ..-.|...||..|+..-.. ...-.||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 357899999888654433 3334899999999865432 13456999975
No 91
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=82.54 E-value=0.26 Score=36.73 Aligned_cols=49 Identities=27% Similarity=0.596 Sum_probs=33.0
Q ss_pred CCcccccccccccc--CceeEEeccCCeecHhHHHHHHh------cCCCCCCccccC
Q 013394 228 TSRTCAICLEDYSV--GEKLRILPCRHKFHAFCVDSWLT------SWRTFCPVCKRD 276 (444)
Q Consensus 228 ~~~~C~ICle~~~~--~~~~~~lpC~H~FH~~Ci~~Wl~------~~~~~CP~CR~~ 276 (444)
++..|.||.+.... ++.+..-.|.-.||..|+.+-+. ...-.|+.|+..
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 46889999987543 22222223889999999986442 234569999764
No 92
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=82.45 E-value=0.3 Score=44.02 Aligned_cols=46 Identities=30% Similarity=0.545 Sum_probs=32.6
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhc---CCCCCCccccC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 276 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~ 276 (444)
+++.|.||.+. ++-+..=.|.-.||..|+.+-|.. ..-.||.|+..
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 35789999854 543333348899999999887664 23469999764
No 93
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=82.33 E-value=0.96 Score=48.44 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=50.0
Q ss_pred CCCCCCCCCcccCCCcceEEEEecCCCCHHHHHHHHHHcCCeEEEEeccCCCcceeeecCCCCCceEEEEEEeccccchh
Q 013394 61 ACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKL 140 (444)
Q Consensus 61 aC~~l~~~~~~~~~~~~~ivLV~RG~CsF~~Kv~~Aq~aGA~avII~n~~~~~~~~~~~g~~~~i~Ip~v~Is~~~G~~L 140 (444)
.|.+....+ ....++|++++| .|..|..+++.+|+.++|++++..+.. ....+|++++...+|..+
T Consensus 269 ~~~~~~~~~---~~v~gkivl~~~---~~~~~~~~~~~~Ga~gvi~~~~~~~~~--------~~~~lP~~~v~~~~g~~i 334 (621)
T 3vta_A 269 FCTDKSVNP---NLLKGKIVVCEA---SFGPHEFFKSLDGAAGVLMTSNTRDYA--------DSYPLPSSVLDPNDLLAT 334 (621)
T ss_dssp TTCTTCSCG---GGTTTSEEECSS---CCCHHHHHHHHTTCSEEEEECSCCSSC--------CCCSSSEEEECHHHHHHH
T ss_pred ccccccccc---ccccceEEEEec---CCChhHHhhhhcceeEEEEEecCCCcc--------cccccceEEECHHHHHHH
Confidence 465543322 345799999865 466899999999999999998765421 234688999999988887
Q ss_pred hhh
Q 013394 141 KQY 143 (444)
Q Consensus 141 ~~~ 143 (444)
+.+
T Consensus 335 ~~~ 337 (621)
T 3vta_A 335 LRY 337 (621)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 94
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.60 E-value=0.17 Score=36.62 Aligned_cols=46 Identities=26% Similarity=0.593 Sum_probs=31.5
Q ss_pred CCCccccccccccccCceeEEeccCCeecHhHHHHHHhc---CCCCCCcccc
Q 013394 227 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKR 275 (444)
Q Consensus 227 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~ 275 (444)
.++..|.||.+. ++-+..-.|...||..|+++-|.. ..-.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 346889999874 443443348899999999865543 2335988864
No 95
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=81.48 E-value=1.3 Score=37.79 Aligned_cols=48 Identities=23% Similarity=0.504 Sum_probs=31.6
Q ss_pred ccCCCccccccccccccCceeEEeccCCeecHhHHHHHH------h----cCCCCCCcccc
Q 013394 225 DNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWL------T----SWRTFCPVCKR 275 (444)
Q Consensus 225 ~~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl------~----~~~~~CP~CR~ 275 (444)
++..++.|.||.+. ++-+..=.|...||..||++=+ + ...-.|++|+.
T Consensus 53 ~Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TTSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34456889999864 3322222388999999999742 1 23456999954
No 96
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.46 E-value=0.41 Score=39.47 Aligned_cols=47 Identities=26% Similarity=0.599 Sum_probs=31.0
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhc---CCCCCCccc
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCK 274 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR 274 (444)
+++.|.||.+.=...+-+.--.|...||..|++.++.. ....||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 46889999876322222444558999999999887642 233466553
No 97
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=81.32 E-value=0.56 Score=32.98 Aligned_cols=45 Identities=24% Similarity=0.571 Sum_probs=29.3
Q ss_pred cccccccccccCceeEEeccCCeecHhHHHHHHhc---CCCCCCcccc
Q 013394 231 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKR 275 (444)
Q Consensus 231 ~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~ 275 (444)
.|.||.+.-..++-+..-.|...||..|+++=|.. ..-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48899865333333333348899999999764443 2345999964
No 98
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.96 E-value=0.69 Score=35.44 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=31.0
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHH--------hcCCCCCCccccCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWL--------TSWRTFCPVCKRDA 277 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl--------~~~~~~CP~CR~~i 277 (444)
...| ||...+..+..+..-.|...||..|+..-. ....-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3556 898877544444444489999999985221 12355699997643
No 99
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=78.64 E-value=0.5 Score=35.33 Aligned_cols=46 Identities=26% Similarity=0.548 Sum_probs=32.0
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhc---CCCCCCccccC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 276 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~ 276 (444)
++..|.||.+. ++-+..=.|.-.||..|+.+-|.. ..-.||.|+..
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 46889999864 443333348889999999865543 23469999753
No 100
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=76.80 E-value=0.62 Score=42.20 Aligned_cols=48 Identities=19% Similarity=0.432 Sum_probs=32.8
Q ss_pred CccccccccccccCc----eeEEeccCCeecHhHHHH------HHhc----CCCCCCccccC
Q 013394 229 SRTCAICLEDYSVGE----KLRILPCRHKFHAFCVDS------WLTS----WRTFCPVCKRD 276 (444)
Q Consensus 229 ~~~C~ICle~~~~~~----~~~~lpC~H~FH~~Ci~~------Wl~~----~~~~CP~CR~~ 276 (444)
+..|+||...|..++ -+..--|...||..|+.- -+.. ..-.||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 356999999998876 233334899999999742 1110 13469999764
No 101
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.74 E-value=0.61 Score=37.02 Aligned_cols=50 Identities=20% Similarity=0.508 Sum_probs=33.5
Q ss_pred CccccccccccccC-ceeEEe-ccCCeecHhHHHHHHh-------cCCCCCCccccCCc
Q 013394 229 SRTCAICLEDYSVG-EKLRIL-PCRHKFHAFCVDSWLT-------SWRTFCPVCKRDAR 278 (444)
Q Consensus 229 ~~~C~ICle~~~~~-~~~~~l-pC~H~FH~~Ci~~Wl~-------~~~~~CP~CR~~i~ 278 (444)
+..|.||.+.-... +.+..- .|...||..|+++-|. .....|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 57899999764332 222222 3889999999987654 23456999976543
No 102
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.29 E-value=1.5 Score=34.86 Aligned_cols=46 Identities=22% Similarity=0.455 Sum_probs=32.2
Q ss_pred CCCccccccccccccCceeEEeccCCeecHhHHHHHHhc---CCCCCCcccc
Q 013394 227 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKR 275 (444)
Q Consensus 227 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~ 275 (444)
.++..|.||.+. ++-+..-.|.-.||..|+++=|.. ....||.|+.
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 346899999864 443333348888999999876654 2346999975
No 103
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=75.20 E-value=0.42 Score=34.99 Aligned_cols=47 Identities=26% Similarity=0.596 Sum_probs=32.5
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhc---CCCCCCccccCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRDA 277 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~i 277 (444)
++..|.||.+. ++-+..-.|.-.||..|+.+-|.. ..-.||.|+...
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45789999874 444443348899999999865543 234699997644
No 104
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=73.74 E-value=2.2 Score=35.10 Aligned_cols=46 Identities=24% Similarity=0.462 Sum_probs=29.3
Q ss_pred Ccccccccccc------ccCceeEEeccCCeecHhHHHH------HHhcCCCCCCccc
Q 013394 229 SRTCAICLEDY------SVGEKLRILPCRHKFHAFCVDS------WLTSWRTFCPVCK 274 (444)
Q Consensus 229 ~~~C~ICle~~------~~~~~~~~lpC~H~FH~~Ci~~------Wl~~~~~~CP~CR 274 (444)
...|.+|+..= ..++-+.--.|+..||..|+.. .+....-.||-|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 46899998752 1223344445999999999963 2334445577774
No 105
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=72.79 E-value=0.59 Score=37.12 Aligned_cols=51 Identities=18% Similarity=0.388 Sum_probs=32.1
Q ss_pred CCccccccccccccC-ceeEEe-ccCCeecHhHHHHHHh-cCCCCCCccccCCc
Q 013394 228 TSRTCAICLEDYSVG-EKLRIL-PCRHKFHAFCVDSWLT-SWRTFCPVCKRDAR 278 (444)
Q Consensus 228 ~~~~C~ICle~~~~~-~~~~~l-pC~H~FH~~Ci~~Wl~-~~~~~CP~CR~~i~ 278 (444)
++..|.||.+.-... +.+..- .|.-.||..|+..-+. .....||.|+....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 458899998753222 222222 3778899999986432 13456999976543
No 106
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=72.31 E-value=1.8 Score=48.52 Aligned_cols=49 Identities=12% Similarity=0.014 Sum_probs=41.5
Q ss_pred CCccccccccccccCceeEEeccC-CeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCR-HKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~-H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
+...|+|-++-|.++ .++|-| +.|-..+|++||..+. +||+=|.++...
T Consensus 890 ~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~-tdP~Tr~~L~~~ 939 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDS-TDPFNRMPLKLE 939 (968)
T ss_dssp GGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCCGG
T ss_pred HHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCC-CCCCCCCCCCcc
Confidence 357899999999887 789987 5899999999999855 599999888653
No 107
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=70.58 E-value=1.4 Score=33.53 Aligned_cols=49 Identities=18% Similarity=0.382 Sum_probs=31.4
Q ss_pred CCCccccccccccc-cCceeEEe-ccCCeecHhHHHHHHh-cCCCCCCcccc
Q 013394 227 CTSRTCAICLEDYS-VGEKLRIL-PCRHKFHAFCVDSWLT-SWRTFCPVCKR 275 (444)
Q Consensus 227 ~~~~~C~ICle~~~-~~~~~~~l-pC~H~FH~~Ci~~Wl~-~~~~~CP~CR~ 275 (444)
.++..|.||.+.-. .++++..- .|.-.||..|+..-.. ...-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34689999987632 22233222 3888999999975432 23446999965
No 108
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=70.24 E-value=0.78 Score=37.65 Aligned_cols=49 Identities=18% Similarity=0.384 Sum_probs=33.2
Q ss_pred CccccccccccccCceeEEe--ccCCeecHhHHHHHH---------hcCCCCCCccccCC
Q 013394 229 SRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWL---------TSWRTFCPVCKRDA 277 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~l--pC~H~FH~~Ci~~Wl---------~~~~~~CP~CR~~i 277 (444)
...|.||...+...+..+.- .|.-.||..|+.--- ....-.||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 36799999998665554444 488889999985321 01234699998743
No 109
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.08 E-value=1.8 Score=34.61 Aligned_cols=45 Identities=33% Similarity=0.723 Sum_probs=27.7
Q ss_pred CccccccccccccCceeEEec--cC-CeecHhHHHHHHhc---CCCCCCccccCC
Q 013394 229 SRTCAICLEDYSVGEKLRILP--CR-HKFHAFCVDSWLTS---WRTFCPVCKRDA 277 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lp--C~-H~FH~~Ci~~Wl~~---~~~~CP~CR~~i 277 (444)
...| ||.+... ++.+..=. |. ..||..|+. |.. .+-.||.|+..-
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 4566 9988643 33222222 44 579999997 333 244699997643
No 110
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=69.90 E-value=0.72 Score=41.86 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=31.6
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhc---CCCCCCccccC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 276 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~ 276 (444)
++.|.+|.+. ++-+..-.|...||..|+++=+.. ....||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4689999864 444444448889999999765543 23469999765
No 111
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=68.53 E-value=1.7 Score=30.75 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=29.2
Q ss_pred ccccccccccccCceeEEe--ccCCeecHhHHHHHH---hcCCCCCCccc
Q 013394 230 RTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWL---TSWRTFCPVCK 274 (444)
Q Consensus 230 ~~C~ICle~~~~~~~~~~l--pC~H~FH~~Ci~~Wl---~~~~~~CP~CR 274 (444)
-.|.+|...+..++..+.- .|.-.||..|+.--. ...+-.||.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3588898887655444333 488889999975322 12455699985
No 112
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.26 E-value=3.9 Score=31.40 Aligned_cols=48 Identities=25% Similarity=0.461 Sum_probs=30.6
Q ss_pred CccccccccccccCc-eeEEeccCCeecHhHHHHHHh----cCCCCCCccccCC
Q 013394 229 SRTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLT----SWRTFCPVCKRDA 277 (444)
Q Consensus 229 ~~~C~ICle~~~~~~-~~~~lpC~H~FH~~Ci~~Wl~----~~~~~CP~CR~~i 277 (444)
...| ||...+.... .+..--|...||..|+.---. ...-.||.|+..-
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3556 9988875333 333334899999999853221 1344699997643
No 113
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.14 E-value=0.66 Score=37.13 Aligned_cols=49 Identities=24% Similarity=0.421 Sum_probs=32.3
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhc---CCCCCCccccC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 276 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~ 276 (444)
++..|.||.+.-..++.+..=-|...||..|+.+=|.. ..-.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 35789999876433323333348999999999854432 23469999764
No 114
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=65.96 E-value=1.7 Score=35.78 Aligned_cols=46 Identities=26% Similarity=0.567 Sum_probs=29.8
Q ss_pred ccccccccccccCcee-EEeccCCeecHhHHHHHHhc---CCCCCCcccc
Q 013394 230 RTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTS---WRTFCPVCKR 275 (444)
Q Consensus 230 ~~C~ICle~~~~~~~~-~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~ 275 (444)
..|.||.+.-..++.+ ..-.|...||..|+++-|.. ..-.||.||.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 4788998642222223 22338999999999876554 2346999974
No 115
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=65.54 E-value=3.1 Score=31.48 Aligned_cols=46 Identities=33% Similarity=0.707 Sum_probs=27.9
Q ss_pred CCccccccccccccCceeEEec--cC-CeecHhHHHHHHhc---CCCCCCccccCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILP--CR-HKFHAFCVDSWLTS---WRTFCPVCKRDA 277 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lp--C~-H~FH~~Ci~~Wl~~---~~~~CP~CR~~i 277 (444)
+...| ||..... ++.+..=. |. ..||..|+. |.. .+-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 8987542 43222222 55 589999997 433 234699997643
No 116
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=65.21 E-value=1.7 Score=38.43 Aligned_cols=47 Identities=21% Similarity=0.452 Sum_probs=30.7
Q ss_pred CccccccccccccCce-eEEeccCCeecHhHHHHHHh----cCCCCCCccccC
Q 013394 229 SRTCAICLEDYSVGEK-LRILPCRHKFHAFCVDSWLT----SWRTFCPVCKRD 276 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~-~~~lpC~H~FH~~Ci~~Wl~----~~~~~CP~CR~~ 276 (444)
...| ||......+.. +..=.|.-.||..|+..--. ...-.||.|+..
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 4678 99987654433 33334889999999953221 224469999764
No 117
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=64.47 E-value=1.8 Score=34.90 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=29.5
Q ss_pred ccccccccccccCceeEEeccCCeecHhHHHHHHhc--CCCCCCcccc
Q 013394 230 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVCKR 275 (444)
Q Consensus 230 ~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~--~~~~CP~CR~ 275 (444)
..| ||......+..+..=.|.-.||..|+..=+.. ..-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 89776655544444448899999998753322 1346999963
No 118
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=64.24 E-value=1 Score=34.91 Aligned_cols=47 Identities=30% Similarity=0.679 Sum_probs=28.6
Q ss_pred ccccccccccccCceeEEeccCCeecHhHHHHHHhc---CC-CCCCccccC
Q 013394 230 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WR-TFCPVCKRD 276 (444)
Q Consensus 230 ~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~-~~CP~CR~~ 276 (444)
-.|.||.+.-..++.+..=.|...||..|+++-|.. .. -.||.|+.+
T Consensus 27 C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 27 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp TSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred CcCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 367778765333222222238899999999976654 12 469999753
No 119
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=63.36 E-value=5.9 Score=27.24 Aligned_cols=8 Identities=13% Similarity=0.414 Sum_probs=3.2
Q ss_pred hhhhcccc
Q 013394 181 TCFFVRRH 188 (444)
Q Consensus 181 ~~~~~~~~ 188 (444)
+.++++|+
T Consensus 31 ~~~~~RRR 38 (44)
T 2jwa_A 31 FGILIKRR 38 (44)
T ss_dssp HHHHHHHH
T ss_pred HHhheehh
Confidence 33444443
No 120
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=63.34 E-value=8.3 Score=29.96 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=28.9
Q ss_pred CCccccccccccccCceeEEec--cCCeecHhHHHHHHhc
Q 013394 228 TSRTCAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTS 265 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lp--C~H~FH~~Ci~~Wl~~ 265 (444)
....|.+|.|.+++..-+. -| =.|.||..|-+..+++
T Consensus 14 a~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceee-CCCccCCeeeccccHHHHHh
Confidence 3578999999988765443 23 3799999999999876
No 121
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=62.46 E-value=2.3 Score=32.68 Aligned_cols=48 Identities=17% Similarity=0.353 Sum_probs=30.9
Q ss_pred CccccccccccccCceeEEe--ccCCeecHhHHHHHHhc--------CCCCCCccccCC
Q 013394 229 SRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLTS--------WRTFCPVCKRDA 277 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~l--pC~H~FH~~Ci~~Wl~~--------~~~~CP~CR~~i 277 (444)
...| ||......+..+..= -|...||..|+.---.. .+-.||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 4567 898875455444444 58899999998532211 234699997643
No 122
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=61.37 E-value=1.5 Score=33.12 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=30.8
Q ss_pred CccccccccccccCc-eeEEeccCCeecHhHHHHHHh---cCCCCCCccccCC
Q 013394 229 SRTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLT---SWRTFCPVCKRDA 277 (444)
Q Consensus 229 ~~~C~ICle~~~~~~-~~~~lpC~H~FH~~Ci~~Wl~---~~~~~CP~CR~~i 277 (444)
...| ||......++ .+..=.|.-.||..|+..--. ...-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 4568 7988765554 333334888999999864321 1234599997643
No 123
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.22 E-value=1.7 Score=33.63 Aligned_cols=47 Identities=26% Similarity=0.586 Sum_probs=30.6
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhc---C-CCCCCcccc
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---W-RTFCPVCKR 275 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~-~~~CP~CR~ 275 (444)
+..|.||...-..++.+..=.|...||..|+++=|.. . .-.||.|+.
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 4578999865333333333348899999999865443 2 346999965
No 124
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=60.65 E-value=2.6 Score=34.87 Aligned_cols=45 Identities=24% Similarity=0.525 Sum_probs=28.0
Q ss_pred cccccccccccc-------CceeEEeccCCeecHhHHHHHH------hcCCCCCCccc
Q 013394 230 RTCAICLEDYSV-------GEKLRILPCRHKFHAFCVDSWL------TSWRTFCPVCK 274 (444)
Q Consensus 230 ~~C~ICle~~~~-------~~~~~~lpC~H~FH~~Ci~~Wl------~~~~~~CP~CR 274 (444)
+.|.||+..-.. ++-+..-.|+..||..|++.+. ....-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 569999875421 1234444589999999998652 22344466663
No 125
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=60.56 E-value=1.8 Score=32.73 Aligned_cols=45 Identities=29% Similarity=0.696 Sum_probs=28.0
Q ss_pred cccccccccccCceeEEeccCCeecHhHHHHHHhc---C-CCCCCcccc
Q 013394 231 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---W-RTFCPVCKR 275 (444)
Q Consensus 231 ~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~-~~~CP~CR~ 275 (444)
.|.||...-..++.+.-=.|...||..|+++=|.. . .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 57788754222322222238899999999865543 2 346999975
No 126
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=59.39 E-value=6.7 Score=29.10 Aligned_cols=33 Identities=21% Similarity=0.602 Sum_probs=24.3
Q ss_pred CCccccccccccccCceeEEe--ccCCeecHhHHH
Q 013394 228 TSRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVD 260 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~l--pC~H~FH~~Ci~ 260 (444)
....|.+|...+..++..+.- .|.-.||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 347899999998776544433 588899999984
No 127
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=58.17 E-value=14 Score=29.23 Aligned_cols=56 Identities=21% Similarity=0.401 Sum_probs=40.0
Q ss_pred CccccccccccccCc--ee--EEeccCCeecHhHHHHHHhcCCCCCCccccCCcCCCCCC
Q 013394 229 SRTCAICLEDYSVGE--KL--RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEP 284 (444)
Q Consensus 229 ~~~C~ICle~~~~~~--~~--~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~ 284 (444)
...|.||-++..... ++ ..--|+--.|..|.+-=....+..||-|+......++.|
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCC
Confidence 478999999864332 12 223377778999998777766667999999887655554
No 128
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=57.14 E-value=7 Score=32.04 Aligned_cols=45 Identities=29% Similarity=0.582 Sum_probs=29.1
Q ss_pred CCCccccccccccccCceeEEe---ccCCeecHhHHHHHHhc---CCCCCCccccCC
Q 013394 227 CTSRTCAICLEDYSVGEKLRIL---PCRHKFHAFCVDSWLTS---WRTFCPVCKRDA 277 (444)
Q Consensus 227 ~~~~~C~ICle~~~~~~~~~~l---pC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~i 277 (444)
.+++.|.+|.+ .++ +..= .|...||..|+. |.. ..-.||.|+-.+
T Consensus 13 ~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 13 MHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 34688999984 243 3333 377899999998 543 233588776544
No 129
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=56.48 E-value=2.7 Score=39.20 Aligned_cols=47 Identities=28% Similarity=0.644 Sum_probs=27.5
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhc---C-CCCCCcccc
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---W-RTFCPVCKR 275 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~-~~~CP~CR~ 275 (444)
+..|.+|...=..++-+..=.|...||..|+++=|.. . .-.||.|+.
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 4578999864323333333348899999999965543 2 346999975
No 130
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=56.30 E-value=9.1 Score=26.29 Aligned_cols=10 Identities=40% Similarity=0.750 Sum_probs=4.3
Q ss_pred HHhhhhcccc
Q 013394 179 LATCFFVRRH 188 (444)
Q Consensus 179 l~~~~~~~~~ 188 (444)
++++++++|+
T Consensus 29 ~~~~~~~RRr 38 (44)
T 2ks1_B 29 LGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3334444443
No 131
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=55.51 E-value=2.2 Score=32.07 Aligned_cols=46 Identities=17% Similarity=0.434 Sum_probs=29.2
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhc--CCCCCCcccc
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVCKR 275 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~--~~~~CP~CR~ 275 (444)
...| ||...+..+..+..-.|.-.||..|+..--.. ..-.||.|+.
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 4678 99887653223443448999999998643211 2345999864
No 132
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=53.13 E-value=8.6 Score=38.40 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=32.1
Q ss_pred CccccccccccccCceeEEeccCCe--ecHhHHHHHHh-cCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHK--FHAFCVDSWLT-SWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~--FH~~Ci~~Wl~-~~~~~CP~CR~~i~~ 279 (444)
...|+|-...|..+ +|-..|.|. |-..-+-.... .....||+|.+.+..
T Consensus 249 SL~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 36899888777665 788889998 54333322222 234569999887643
No 133
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=49.34 E-value=3.4 Score=30.04 Aligned_cols=43 Identities=37% Similarity=0.750 Sum_probs=26.3
Q ss_pred CccccccccccccCceeEEec--cC-CeecHhHHHHHHhc---CCCCCCcccc
Q 013394 229 SRTCAICLEDYSVGEKLRILP--CR-HKFHAFCVDSWLTS---WRTFCPVCKR 275 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lp--C~-H~FH~~Ci~~Wl~~---~~~~CP~CR~ 275 (444)
..-| ||.+.. .++.+..=. |. ..||..|+. |.. .+-.||.|++
T Consensus 9 ~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3556 998764 243222222 55 589999998 333 2346999965
No 134
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.74 E-value=12 Score=27.77 Aligned_cols=40 Identities=23% Similarity=0.605 Sum_probs=30.2
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
...|+.|-+.+..++.+. .-+..||..|. .|-.|+.++..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFCL---------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTTC---------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCCC---------CCCCCCCccCC
Confidence 468999999888766544 35788999882 39999887764
No 135
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=48.71 E-value=5.5 Score=29.16 Aligned_cols=43 Identities=23% Similarity=0.396 Sum_probs=28.1
Q ss_pred ccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCcc
Q 013394 230 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 273 (444)
Q Consensus 230 ~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~C 273 (444)
..|--|+..|......+.-.|++.|+.+|=.---++-+. ||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~-CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHS-CPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCS-SSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccC-CcCC
Confidence 469999998864432333349999999994332233343 9988
No 136
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=48.70 E-value=3.4 Score=30.12 Aligned_cols=43 Identities=35% Similarity=0.733 Sum_probs=25.7
Q ss_pred CccccccccccccCceeEEec--cC-CeecHhHHHHHHhc---CCCCCCcccc
Q 013394 229 SRTCAICLEDYSVGEKLRILP--CR-HKFHAFCVDSWLTS---WRTFCPVCKR 275 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lp--C~-H~FH~~Ci~~Wl~~---~~~~CP~CR~ 275 (444)
...| ||.... .++.+..=. |. ..||..|+. |.. .+-.||.|+.
T Consensus 10 ~~~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3556 898763 232222112 44 579999998 443 2346999964
No 137
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=48.37 E-value=9.5 Score=28.38 Aligned_cols=41 Identities=10% Similarity=0.064 Sum_probs=19.2
Q ss_pred CccccccccccccCceeEEeccCCeecH-hHHHHHHhcCCCCCCccc
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHA-FCVDSWLTSWRTFCPVCK 274 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~-~Ci~~Wl~~~~~~CP~CR 274 (444)
-..|..|...+..+. .. ..=+.+|+. .|..+-+. ..|-.|.
T Consensus 27 CF~C~~C~~~L~~~~-~~-~~~g~~yC~~~cy~~~f~---~~C~~C~ 68 (76)
T 1iml_A 27 CLKCEKCGKTLTSGG-HA-EHEGKPYCNHPCYSAMFG---PKGFGRG 68 (76)
T ss_dssp TCBCTTTCCBCCTTT-EE-EETTEEEETTTHHHHHSS---CCCSSCC
T ss_pred CCCccccCccCCCCc-eE-CcCCeEeeCHHHHHHHhC---ccCCCcC
Confidence 356666666655442 11 113445555 36544322 2366553
No 138
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=47.84 E-value=12 Score=37.26 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=32.5
Q ss_pred CccccccccccccCceeEEeccCCe--ecHhHHHHHHhc-CCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHK--FHAFCVDSWLTS-WRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~--FH~~Ci~~Wl~~-~~~~CP~CR~~i~~ 279 (444)
...|+|-...|..+ +|-..|.|. |-..-+-....+ ....||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 35799888777665 788889998 554333333222 34569999987753
No 139
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=45.11 E-value=3.1 Score=33.99 Aligned_cols=46 Identities=22% Similarity=0.457 Sum_probs=29.2
Q ss_pred cccccccccccCceeEEeccCCeecHhHHHHHHhc---CCCCCCccccC
Q 013394 231 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 276 (444)
Q Consensus 231 ~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~ 276 (444)
.|.||.+.-...+.+..-.|...||..|+++=|.. ..-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57788765333323333348899999999865443 23469998653
No 140
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=43.63 E-value=15 Score=27.48 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=24.8
Q ss_pred CCccccccccccccCceeEEecc-CCeecHhHHHHH
Q 013394 228 TSRTCAICLEDYSVGEKLRILPC-RHKFHAFCVDSW 262 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC-~H~FH~~Ci~~W 262 (444)
+..-|.||.++ -.+|.+.| +-+||..|..+-
T Consensus 7 e~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 35789999987 34899999 789999996654
No 141
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=43.22 E-value=16 Score=27.21 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhh
Q 013394 162 WSIMAISFISLLAMSAVLATCFF 184 (444)
Q Consensus 162 ~~i~~IsfI~ll~l~~vl~~~~~ 184 (444)
|+.++|++...+.++++.++|+|
T Consensus 7 ~p~~LivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 7 GSMALIVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333444444444444444444
No 142
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=43.11 E-value=21 Score=24.46 Aligned_cols=9 Identities=33% Similarity=0.619 Sum_probs=3.8
Q ss_pred hhhhccccc
Q 013394 181 TCFFVRRHR 189 (444)
Q Consensus 181 ~~~~~~~~r 189 (444)
++++++|++
T Consensus 30 ~~~~~RRRr 38 (44)
T 2l2t_A 30 FAVYVRRKS 38 (44)
T ss_dssp HHHHHHTTC
T ss_pred HHHHhhhhh
Confidence 344444433
No 143
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.30 E-value=18 Score=27.44 Aligned_cols=39 Identities=26% Similarity=0.539 Sum_probs=29.8
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCc
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 278 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 278 (444)
...|.-|-+.+..++.+.. -+..||.+|+ .|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF---------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSCF---------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTTC---------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE--CCcccccccC---------CcCcCCCCcC
Confidence 4789999998877765544 4678999882 4999988775
No 144
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=41.10 E-value=10 Score=32.27 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=24.8
Q ss_pred CCcccccccccccc--CceeEEeccCCeecHhHHH
Q 013394 228 TSRTCAICLEDYSV--GEKLRILPCRHKFHAFCVD 260 (444)
Q Consensus 228 ~~~~C~ICle~~~~--~~~~~~lpC~H~FH~~Ci~ 260 (444)
+...|.+|...|.. +.......|+|.+|..|=.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 46899999999943 3345566699999999844
No 145
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=40.08 E-value=2.7 Score=31.37 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=26.0
Q ss_pred ccccccccccccCceeEEe---ccCCeecHhHHHHHH---hc----CCCCCCcccc
Q 013394 230 RTCAICLEDYSVGEKLRIL---PCRHKFHAFCVDSWL---TS----WRTFCPVCKR 275 (444)
Q Consensus 230 ~~C~ICle~~~~~~~~~~l---pC~H~FH~~Ci~~Wl---~~----~~~~CP~CR~ 275 (444)
..| ||......+. ++.- .|.-.||..|+.--- .. .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 446 8976655553 3333 278789999984211 00 1245999974
No 146
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=39.15 E-value=6.3 Score=28.94 Aligned_cols=43 Identities=33% Similarity=0.681 Sum_probs=25.8
Q ss_pred CccccccccccccCceeEEec--cC-CeecHhHHHHHHhc---CCCCCCcccc
Q 013394 229 SRTCAICLEDYSVGEKLRILP--CR-HKFHAFCVDSWLTS---WRTFCPVCKR 275 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lp--C~-H~FH~~Ci~~Wl~~---~~~~CP~CR~ 275 (444)
..-| ||.+.. .++.+..=. |. ..||..|+. |.. .+-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3556 998753 343222222 44 789999997 332 2346999965
No 147
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.40 E-value=15 Score=27.98 Aligned_cols=42 Identities=31% Similarity=0.546 Sum_probs=30.7
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
....|+-|-+.+...+.+. .-+..||..|+ .|-.|+..+...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF---------~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF---------RCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC---------BCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC---------EEcCCCCCcCCC
Confidence 3578999999887666554 34778999982 388888877543
No 148
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=38.37 E-value=35 Score=26.08 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 228 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
....|.-|.+.+.. +. +..-+..||.+|+ .|-.|++.+...
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF---------~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VKARDKYRHPECF---------VCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EESSSCEECTTTC---------CCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-cE--EEECCceECccCC---------EecCCCCCCCCC
Confidence 34789999988774 32 3346788999982 499998887643
No 149
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=36.32 E-value=21 Score=27.96 Aligned_cols=50 Identities=16% Similarity=0.426 Sum_probs=32.5
Q ss_pred CccccccccccccCc-eeEEeccCCeecHhHHHHHHh-----cCCCCCCccccCCc
Q 013394 229 SRTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLT-----SWRTFCPVCKRDAR 278 (444)
Q Consensus 229 ~~~C~ICle~~~~~~-~~~~lpC~H~FH~~Ci~~Wl~-----~~~~~CP~CR~~i~ 278 (444)
...|.+|...|..-. +--.-.||++|+..|...+.. .....|-.|-..+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 468999999997643 223334999999999776532 11123777755443
No 150
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=35.84 E-value=4 Score=33.67 Aligned_cols=48 Identities=17% Similarity=0.416 Sum_probs=31.1
Q ss_pred ccccccccccccCceeEEeccCCeecHhHHHHHHhc---CCCCCCccccCC
Q 013394 230 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRDA 277 (444)
Q Consensus 230 ~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~i 277 (444)
..|.||.+.-..++.+..-.|...||..|+++=|.. ..-.||.|+..+
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 368888875434443433348999999999864433 233599986543
No 151
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=35.63 E-value=24 Score=27.18 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=25.5
Q ss_pred CCccccccccccccCc-eeEEeccCCeecHhHHHHH
Q 013394 228 TSRTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSW 262 (444)
Q Consensus 228 ~~~~C~ICle~~~~~~-~~~~lpC~H~FH~~Ci~~W 262 (444)
+...|.+|...|..-. +--.--||++|+..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3478999999997653 2222349999999997654
No 152
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.52 E-value=32 Score=25.24 Aligned_cols=42 Identities=24% Similarity=0.522 Sum_probs=29.4
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
...|+-|.+.+...+.+.. .-+..||..|. .|-.|++++...
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF---------~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF---------VCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTTC---------CCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEE-eCccEeccccC---------eECCCCCCCCCC
Confidence 4789999998875544321 24678998882 388888877653
No 153
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=35.21 E-value=24 Score=27.09 Aligned_cols=33 Identities=21% Similarity=0.607 Sum_probs=24.2
Q ss_pred CccccccccccccCce-eEEeccCCeecHhHHHH
Q 013394 229 SRTCAICLEDYSVGEK-LRILPCRHKFHAFCVDS 261 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~-~~~lpC~H~FH~~Ci~~ 261 (444)
...|.+|...|..-.+ --.--||.+|+..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4689999999986532 22234999999999754
No 154
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=34.24 E-value=24 Score=30.94 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=32.4
Q ss_pred cccCCCccccccccccccCceeEEec---cCCeecHhHHHHHHhc---------CCCCCCccc
Q 013394 224 EDNCTSRTCAICLEDYSVGEKLRILP---CRHKFHAFCVDSWLTS---------WRTFCPVCK 274 (444)
Q Consensus 224 ~~~~~~~~C~ICle~~~~~~~~~~lp---C~H~FH~~Ci~~Wl~~---------~~~~CP~CR 274 (444)
++++.+..|.||-+. .++..-. |...||..||+.++-. ..-.|=+|.
T Consensus 74 DeDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp CTTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 344557899999863 3343333 8889999999988643 233588884
No 155
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=33.64 E-value=27 Score=26.13 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=23.1
Q ss_pred ccccccccccccCce-eEEeccCCeecHhHHHH
Q 013394 230 RTCAICLEDYSVGEK-LRILPCRHKFHAFCVDS 261 (444)
Q Consensus 230 ~~C~ICle~~~~~~~-~~~lpC~H~FH~~Ci~~ 261 (444)
..|.+|...|..-.+ --.--||.+|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 589999999976432 22224999999999643
No 156
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=33.34 E-value=24 Score=29.47 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=23.9
Q ss_pred CccccccccccccCc-eeEEeccCCeecHhHHHH
Q 013394 229 SRTCAICLEDYSVGE-KLRILPCRHKFHAFCVDS 261 (444)
Q Consensus 229 ~~~C~ICle~~~~~~-~~~~lpC~H~FH~~Ci~~ 261 (444)
...|.+|...|..-. +--.-.||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 468999999997643 222334999999999544
No 157
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=32.49 E-value=6.7 Score=27.51 Aligned_cols=42 Identities=14% Similarity=0.397 Sum_probs=25.5
Q ss_pred ccccccccCceeEEeccCCeecHhHHHHHHhc--CCCCCCcccc
Q 013394 234 ICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVCKR 275 (444)
Q Consensus 234 ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~--~~~~CP~CR~ 275 (444)
||......+..+..-.|+--||..|+.---.. ..-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 67765543233333348889999998643221 2345999864
No 158
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=32.47 E-value=11 Score=23.50 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=20.1
Q ss_pred ccccccccccccCceeEEeccCCeecHhHH
Q 013394 230 RTCAICLEDYSVGEKLRILPCRHKFHAFCV 259 (444)
Q Consensus 230 ~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci 259 (444)
..|+.|-...-..|++. .=+..||+.|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 57999988877665443 34788998883
No 159
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.47 E-value=43 Score=24.89 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=29.7
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
...|+.|-+.+..++++. ..=+..||..|. .|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF---------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDCF---------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTTC---------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEE-EECccccccccC---------chhhCCCccCCC
Confidence 368999999887665432 234778998883 388898877543
No 160
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.80 E-value=29 Score=26.74 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=23.1
Q ss_pred CccccccccccccCc-eeEEeccCCeecHhHHH
Q 013394 229 SRTCAICLEDYSVGE-KLRILPCRHKFHAFCVD 260 (444)
Q Consensus 229 ~~~C~ICle~~~~~~-~~~~lpC~H~FH~~Ci~ 260 (444)
...|.+|...|..-. +--.--||.+|+..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 468999999997643 22223499999999944
No 161
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=29.79 E-value=32 Score=34.46 Aligned_cols=48 Identities=25% Similarity=0.429 Sum_probs=33.5
Q ss_pred ccCCCccccccccccccCceeEEe--ccCCeecHhHHHHHHhc---------CCCCCCcccc
Q 013394 225 DNCTSRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLTS---------WRTFCPVCKR 275 (444)
Q Consensus 225 ~~~~~~~C~ICle~~~~~~~~~~l--pC~H~FH~~Ci~~Wl~~---------~~~~CP~CR~ 275 (444)
++..+..|.||-+. ++-+..= .|...||..||+.++-. ..-.|=+|.-
T Consensus 89 ~DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 89 DDGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 44557899999864 3333333 48899999999998732 2345999954
No 162
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.51 E-value=22 Score=30.88 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=30.6
Q ss_pred CCcccccccccccc--CceeEEeccCCeecHhHHHHHHhc-CCCCCCcccc
Q 013394 228 TSRTCAICLEDYSV--GEKLRILPCRHKFHAFCVDSWLTS-WRTFCPVCKR 275 (444)
Q Consensus 228 ~~~~C~ICle~~~~--~~~~~~lpC~H~FH~~Ci~~Wl~~-~~~~CP~CR~ 275 (444)
++..|++|...|.. +.......|+|.+|..|=. |+.. ..-.|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 35899999998744 3455666799999999962 3221 1123666644
No 163
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.36 E-value=39 Score=25.84 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=28.6
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
...|+-|-+.+. ++.+ ..-+..||..|+ .|-.|++.+..
T Consensus 25 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFL--VALGKSWHPEEF---------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEE--EETTEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEE--EECCccccccCC---------ccCCCCCCCCC
Confidence 478999999874 3333 345788999983 49999888764
No 164
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.29 E-value=54 Score=23.62 Aligned_cols=39 Identities=26% Similarity=0.535 Sum_probs=22.8
Q ss_pred ccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCc
Q 013394 230 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 278 (444)
Q Consensus 230 ~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 278 (444)
..|..|-+.+...+.+ +..=+..||..|+ .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAG-VVALDRVFHVGCF---------VCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCC-EECSSSEECTTTC---------BCSSSCCBCT
T ss_pred CCCccCCCccCCCceE-EEECCCeEcccCC---------cccccCCcCC
Confidence 5677777766543321 2223567777772 3777777663
No 165
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.26 E-value=41 Score=24.21 Aligned_cols=40 Identities=20% Similarity=0.411 Sum_probs=26.4
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
...|.-|-+.+.. +.+. .-+..||.+|+ .|-.|++++...
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a~~~~~H~~CF---------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK--AMNNSWHPECF---------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE--ETTEEECTTTS---------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEE--ECcccccccCC---------EeCCCCCcCCCC
Confidence 4678888887763 3332 34678888883 388888777653
No 166
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.08 E-value=39 Score=24.37 Aligned_cols=41 Identities=22% Similarity=0.539 Sum_probs=27.1
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
...|.-|-+.+...+++ +..-+..||..|. .|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEYGGQTWHEHCF---------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECSTTCCEETTTC---------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccE-EEECccccCcccC---------eECCCCCcCCC
Confidence 36788888887764332 2335778888882 38888777654
No 167
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.99 E-value=27 Score=26.16 Aligned_cols=40 Identities=15% Similarity=0.341 Sum_probs=27.3
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
...|+-|-+.+. ++.+ ..-+..||..|. .|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF---------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDHF---------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTTS---------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCCC---------EeCCCCCccCCC
Confidence 467999988877 3332 235778888882 388888877643
No 168
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.93 E-value=46 Score=25.44 Aligned_cols=41 Identities=27% Similarity=0.550 Sum_probs=29.7
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
...|+-|-+.+...+.+ ..-+..||..|+ .|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF---------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISCF---------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTTC---------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCCC---------eeCCCCCCCCCC
Confidence 46899999988766543 456788998883 388887777654
No 169
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.70 E-value=46 Score=23.97 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=27.1
Q ss_pred ccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 230 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 230 ~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
..|+.|-+.+...+.+. ..-+..||..|. .|-.|++++..
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKM-EYKGSSWHETCF---------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEE-EETTEEEETTTT---------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEE-EECcCeecccCC---------cccccCCccCC
Confidence 57888988877654332 224678888883 38888877654
No 170
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.40 E-value=27 Score=32.17 Aligned_cols=34 Identities=18% Similarity=0.485 Sum_probs=25.2
Q ss_pred CccccccccccccCce-eEEeccCCeecHhHHHHH
Q 013394 229 SRTCAICLEDYSVGEK-LRILPCRHKFHAFCVDSW 262 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~-~~~lpC~H~FH~~Ci~~W 262 (444)
+..|.+|...|..-.+ --.-.||++||..|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 4699999999986532 223349999999997654
No 171
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.74 E-value=26 Score=31.93 Aligned_cols=34 Identities=21% Similarity=0.490 Sum_probs=24.6
Q ss_pred CccccccccccccCc-eeEEeccCCeecHhHHHHH
Q 013394 229 SRTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSW 262 (444)
Q Consensus 229 ~~~C~ICle~~~~~~-~~~~lpC~H~FH~~Ci~~W 262 (444)
+..|.+|...|..-. +--.--||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 579999999997643 2223349999999996543
No 172
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=27.26 E-value=34 Score=26.74 Aligned_cols=51 Identities=14% Similarity=0.305 Sum_probs=32.6
Q ss_pred CccccccccccccCc-eeEEeccCCeecHhHHHHHHh------cCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLT------SWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~-~~~~lpC~H~FH~~Ci~~Wl~------~~~~~CP~CR~~i~~ 279 (444)
...|.+|...|..-. +--.--||++|+..|....+. .....|-.|-..+..
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 468999999997653 222334999999999765321 111237777665543
No 173
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=27.20 E-value=24 Score=26.42 Aligned_cols=40 Identities=23% Similarity=0.611 Sum_probs=26.2
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
...|..|-+.+..++.+. .-+..||..|. .|-.|++++..
T Consensus 7 ~~~C~~C~~~I~~~~~~~--a~~~~~H~~CF---------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ--CDGRSFHRCCF---------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE--ETTEEEESSSE---------ECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEE--eCCcccccccC---------ccCCCCCCCCC
Confidence 367888888876665433 35677888773 37777776644
No 174
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.02 E-value=43 Score=23.95 Aligned_cols=42 Identities=24% Similarity=0.522 Sum_probs=30.6
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
...|+-|.+.+...+.+.. .=+..||..|. .|-.|++++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF---------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF---------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS---------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC---------cccCCCCCCCCC
Confidence 4689999999887665432 34677999984 388998877654
No 175
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=26.68 E-value=8.3 Score=32.28 Aligned_cols=46 Identities=24% Similarity=0.566 Sum_probs=29.4
Q ss_pred CccccccccccccCc-eeEEeccCCeecHhHHHHHHhcCCCCCCcccc
Q 013394 229 SRTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 275 (444)
Q Consensus 229 ~~~C~ICle~~~~~~-~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~ 275 (444)
...|..|...|..-. +--.-.||.+||..|........+ .|-.|-.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vR-VC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPR-LCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CC-EEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCce-ECHHHHH
Confidence 468999999997642 223345999999999776554323 3777744
No 176
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.43 E-value=44 Score=24.18 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=28.5
Q ss_pred Ccccccccccccc--CceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSV--GEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~--~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
...|.-|-+.+.. .+++ +..-+..||.+|+ .|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF---------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDCF---------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTTC---------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCcccC---------EeccCCCcCCC
Confidence 3679999988775 2232 2335788999883 48899887753
No 177
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=25.60 E-value=15 Score=38.14 Aligned_cols=46 Identities=26% Similarity=0.497 Sum_probs=29.0
Q ss_pred ccccccccccccCc-eeEEeccCCeecHhHHHHHHhc----CCCCCCccccC
Q 013394 230 RTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLTS----WRTFCPVCKRD 276 (444)
Q Consensus 230 ~~C~ICle~~~~~~-~~~~lpC~H~FH~~Ci~~Wl~~----~~~~CP~CR~~ 276 (444)
..| ||...+..+. .+.+--|.-.||..|+.---.. ..-.||.|+..
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 345 9988775333 3333348989999999532211 23469999754
No 178
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=25.20 E-value=15 Score=36.77 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=0.0
Q ss_pred CccccccccccccCc-eeEEeccCCeecHhHHHHHH
Q 013394 229 SRTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSWL 263 (444)
Q Consensus 229 ~~~C~ICle~~~~~~-~~~~lpC~H~FH~~Ci~~Wl 263 (444)
...|.+|...|..-. +-..-.||++||..|-..++
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 478999999987542 22333599999999997764
No 179
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=25.14 E-value=21 Score=26.86 Aligned_cols=46 Identities=24% Similarity=0.468 Sum_probs=28.6
Q ss_pred cccccccccccCcee-EEeccCCeecHhHHHHHHh----cCCCCCCccccC
Q 013394 231 TCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLT----SWRTFCPVCKRD 276 (444)
Q Consensus 231 ~C~ICle~~~~~~~~-~~lpC~H~FH~~Ci~~Wl~----~~~~~CP~CR~~ 276 (444)
.-.||...+..++.+ ..--|.-.||..|+.---. ...-.||.|+..
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 344898776543333 3334888999999964321 123469999764
No 180
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.13 E-value=60 Score=23.20 Aligned_cols=39 Identities=18% Similarity=0.521 Sum_probs=26.8
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcC
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 279 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 279 (444)
...|+-|-+.+.. +. +..-+..||..|. .|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF---------~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GG--VTYREQPWHKECF---------VCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCS-SE--EESSSSEEETTTS---------BCSSSCCBCTT
T ss_pred CCCCcccCCeecc-ce--EEECccccCCCCC---------ccCCCCCcCCc
Confidence 3578888888764 32 3345788998883 38888887743
No 181
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.66 E-value=53 Score=24.38 Aligned_cols=39 Identities=23% Similarity=0.532 Sum_probs=27.4
Q ss_pred ccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCcCC
Q 013394 230 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 280 (444)
Q Consensus 230 ~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 280 (444)
..|+-|-+... ++.+. .-+..||..|. .|-.|++++...
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~CF---------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDCF---------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTTS---------SCSSSCCCCCSS
T ss_pred CcCccccCEec-cceEE--ECCceeCccCC---------ccccCCCCCCCC
Confidence 57999998876 33333 35788999883 388888877643
No 182
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.64 E-value=60 Score=23.78 Aligned_cols=39 Identities=26% Similarity=0.489 Sum_probs=27.4
Q ss_pred cccccccccccc--CceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCc
Q 013394 230 RTCAICLEDYSV--GEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 278 (444)
Q Consensus 230 ~~C~ICle~~~~--~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 278 (444)
..|+-|-+.+.. .++. +..-+..||.+|. .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~CF---------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-ICFQDSQWHSECF---------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EEETTEEEEGGGC---------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCcee-EEECCcccCcccC---------ChhhCCCcCC
Confidence 679999988774 2222 3335778999983 3888988775
No 183
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=23.65 E-value=67 Score=21.09 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 013394 166 AISFISLLAMSAVLATCFF 184 (444)
Q Consensus 166 ~IsfI~ll~l~~vl~~~~~ 184 (444)
.+.+..++.+.++....+|
T Consensus 15 GiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 15 AVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHH
Confidence 3444444333333333333
No 184
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=23.64 E-value=15 Score=29.16 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=25.2
Q ss_pred CccccccccccccCceeEEeccC---CeecHhHHHHHHhc---CCCCCCc-ccc
Q 013394 229 SRTCAICLEDYSVGEKLRILPCR---HKFHAFCVDSWLTS---WRTFCPV-CKR 275 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~---H~FH~~Ci~~Wl~~---~~~~CP~-CR~ 275 (444)
...| ||..... ++.+..=-|. -.||..|+. |.. ..-.||. |+.
T Consensus 26 ~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 26 EVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 4567 9987432 3322211244 579999996 332 2446999 964
No 185
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=21.82 E-value=44 Score=27.52 Aligned_cols=39 Identities=21% Similarity=0.381 Sum_probs=29.1
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCc
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 278 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 278 (444)
...|+-|-+.......+. .-+..||..|+ .|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~CF---------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--AMDSYWHSRCL---------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--ETTEEEETTTS---------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE--eCCcEEccccc---------CcCcCCCccc
Confidence 368999999877543333 35788999992 4999998886
No 186
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=21.65 E-value=35 Score=27.53 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=10.9
Q ss_pred ecHhHHHHHHhc
Q 013394 254 FHAFCVDSWLTS 265 (444)
Q Consensus 254 FH~~Ci~~Wl~~ 265 (444)
||..|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 187
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=21.51 E-value=35 Score=27.46 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=10.8
Q ss_pred ecHhHHHHHHhc
Q 013394 254 FHAFCVDSWLTS 265 (444)
Q Consensus 254 FH~~Ci~~Wl~~ 265 (444)
||..|+.+|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 188
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.50 E-value=54 Score=24.32 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=27.3
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhcCCCCCCccccCCc
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 278 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 278 (444)
...|.-|-+.+.. + .+..-+..||..|+ .|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF---------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPECY---------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTTT---------SCSSSCCCHH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCcC---------eeCCCCCCCC
Confidence 4689999988764 3 23345788999983 3888887764
No 189
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=21.27 E-value=38 Score=27.66 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=20.3
Q ss_pred CccccccccccccCceeEEeccCCeecHhHHHHHHhc
Q 013394 229 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS 265 (444)
Q Consensus 229 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~ 265 (444)
...|..|...+..++..... =+..||..|..+.+..
T Consensus 36 CF~C~~C~~~L~~g~~f~~~-~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLLI-NSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEEC-SSSEEEGGGHHHHHHH
T ss_pred cCccccCCCCCCCCCcEEee-CCEEEcHHHhHHHhcc
Confidence 45677776666544433222 3556677776666543
Done!