BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013396
(444 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A
PE=2 SV=1
Length = 375
Score = 316 bits (809), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 204/442 (46%), Positives = 249/442 (56%), Gaps = 74/442 (16%)
Query: 3 ENKQCDARLTSPAAFVEGGIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRD 62
E + LTS AAFVEGGIQDACDDACSICLE F +SDPST
Sbjct: 6 ETTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPST------------------ 47
Query: 63 LGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDPTRFCVNFAARNYLRRS 122
LTSC+HE+HLQC+LEWCQRSSQCPMCWQ ISLKDPT
Sbjct: 48 ---------LTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPT--------------- 83
Query: 123 NKRGALVLIRLEIPPYFIIRLWETLSYRVFVFCLWASFRQQYQVSLILSGGFILILFPSM 182
+L +E F R T + +F F Q+
Sbjct: 84 ---SQELLEAVEQERNF--RFNPTRNATIFRHPTLGDFELQH------------------ 120
Query: 183 QLPVGATDAELEERIIQHLAAAAAMGRARHIGRRESQRNRSSAQARPQFFVFSTHPNTST 242
LPVG +AE+EERIIQHLAAAAAMGRARH RRE R+RSS+Q QF VFS+ PN S+
Sbjct: 121 -LPVGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSSSQGHQQFMVFSSQPNASS 179
Query: 243 ADPVSSSPTQREGEPTPTVTVPTPSSPAAAGEESPEQSTQLLSASASGSSALASSQHEST 302
P P+ P + A GE S + +TQ ++S + ++S
Sbjct: 180 PPPHPPMPSSPSQRDESDTVSNLPHN--ALGEGSHQSNTQPPTSSHPRQVSPSASD---- 233
Query: 303 LNNRRSPNQPSPNSQDRAGPSDFQSFSESLKSRFNAVSMRYKESISKSTRGWKERFFSRY 362
+N R NQ SP+ QDRAGPS+ QSFSESLKSR NAVS RYKESISK+TR WK+R FSR
Sbjct: 234 -SNSRPLNQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRYKESISKNTRNWKDRLFSRN 292
Query: 363 NTTSDLGSEVRREDDAGIERVSGMMERLETRDNNSSSTASVSNSPNNSVPESNNQQVSET 422
+ +DLGSEV+RE AGI VS MMERLETR+N+ STASVS+ N PE+NN+
Sbjct: 293 TSMADLGSEVKREVSAGIATVSRMMERLETRENSRPSTASVSDVSENHTPETNNEHNRAA 352
Query: 423 AHN-NPMNDTNAQGSCGASSGT 443
A + + +N+ + +C SG+
Sbjct: 353 AGDEHSVNERGVKETCATGSGS 374
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 27/80 (33%)
Query: 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLE 86
DDACSICLEPF+ DPSTVTS C+HE+HLQC++E
Sbjct: 43 DDACSICLEPFTLQDPSTVTS---------------------------CKHEYHLQCIIE 75
Query: 87 WCQRSSQCPMCWQPISLKDP 106
W QRS +CP+CWQ L+DP
Sbjct: 76 WSQRSKECPICWQLFVLRDP 95
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%)
Query: 327 SFSESLKSRFNAVSMRYKESISKSTRGWKERFFSRYNTTSDLGSEVRREDDAGIERVSGM 386
S E++KS+ A S +YKESISKS +G KE+ +R N+ +L V+RE +AGI V+ M
Sbjct: 252 SLPEAIKSKLAAASAKYKESISKSKQGLKEKLLARNNSVKELSKGVQREMNAGIAGVARM 311
Query: 387 MERLETRDNNSSSTASVSNS 406
+ER++ +A VS S
Sbjct: 312 IERMDFSSKRFGGSAHVSTS 331
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%)
Query: 58 VILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDPTRFCVNFAARN 117
V L + +L L CRH FH+ C+ +W ++ + CP+C +S+++ + N +
Sbjct: 125 VCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSMEEDSSVLTNGNSFR 184
Query: 118 YLRRSNKR 125
+L +S R
Sbjct: 185 FLNQSEIR 192
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 26/76 (34%)
Query: 30 CSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQ 89
CS+CL F D V ILR L CRH FH+ C+ +W +
Sbjct: 124 CSVCLSKFED-----------------VEILR---------LLPKCRHAFHIGCIDQWLE 157
Query: 90 RSSQCPMCWQPISLKD 105
+ + CP+C ++++D
Sbjct: 158 QHATCPLCRNRVNIED 173
>sp|O80927|ATL33_ARATH RING-H2 finger protein ATL33 OS=Arabidopsis thaliana GN=ATL33 PE=2
SV=2
Length = 235
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 26/79 (32%)
Query: 30 CSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQ 89
CS+CL F+DSD L QL+ C+H FH+ C+ W +
Sbjct: 142 CSVCLMVFTDSDE--------------------------LRQLSECKHAFHVLCIETWLK 175
Query: 90 RSSQCPMCWQPISLKDPTR 108
CP+C +S+K T
Sbjct: 176 DHPNCPICRTDVSVKQQTE 194
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 27/79 (34%)
Query: 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLE 86
+D C CLE ++ +P VT C H FHL C+ E
Sbjct: 178 EDVCPTCLEEYTSENPKIVTK---------------------------CSHHFHLSCIYE 210
Query: 87 WCQRSSQCPMCWQPISLKD 105
W +RS CP+C + + +
Sbjct: 211 WMERSENCPVCGKVMEFNE 229
>sp|Q9LUL6|ATL61_ARATH Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana
GN=ATL61 PE=3 SV=1
Length = 204
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 49 DFHVRFFR-----VVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISL 103
DF+ + F+ VV L +L + L SC H FH++C+ W Q +S CP+C + + L
Sbjct: 76 DFNTKDFKYVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCL 135
Query: 104 K 104
K
Sbjct: 136 K 136
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 43.9 bits (102), Expect = 0.003, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 71 QLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDP 106
++ C+HEFH +C+L W ++++ CP+C + DP
Sbjct: 84 RILPCKHEFHEECILLWLKKTNSCPLCRYELETDDP 119
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 63 LGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPI-SLKDPTRFCVNFAARNYLRR 121
L F + L C H+F +CV EW + ++CP+C QP S+ R +F + Y+ R
Sbjct: 107 LDRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDSIFHSVRAEDDF--KEYVLR 164
Query: 122 SNKRGALV 129
+ G+ V
Sbjct: 165 PSYNGSFV 172
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 63 LGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPI 101
L F + L C H+F +CV EW + ++CP+C QP
Sbjct: 108 LDRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPF 146
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 29/91 (31%)
Query: 18 VEGGIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRH 77
++G DD C+IC F+ S ++T C H
Sbjct: 535 IKGSHLQEIDDVCAICYHEFTTSA-----------------------------RITPCNH 565
Query: 78 EFHLQCVLEWCQRSSQCPMCWQPISLKDPTR 108
FH C+ +W CPMC Q + ++D +
Sbjct: 566 YFHALCLRKWLYIQDTCPMCHQKVYIEDEIK 596
>sp|O43085|DSC1_SCHPO DSC E3 ubiquitin ligase complex subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dsc1 PE=1 SV=2
Length = 695
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 17/81 (20%)
Query: 18 VEGGIQDACDDACSICLEPFS-DSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCR 76
+E ++DA + C IC++P S ST+ VR N+ LT C
Sbjct: 624 LEAFMRDA--NVCPICMQPIELVSTGSTLNPASMMVR----------RNY----MLTPCH 667
Query: 77 HEFHLQCVLEWCQRSSQCPMC 97
H +H QC+L+W + S CP+C
Sbjct: 668 HLYHRQCLLQWMETRSICPVC 688
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 75 CRHEFHLQCVLEWCQRSSQCPMCWQPI 101
C HEFH+ C+ W + CP+C QP+
Sbjct: 650 CMHEFHIHCIDRWLSENCTCPICRQPV 676
>sp|Q9LQM2|ATL81_ARATH RING-H2 finger protein ATL81 OS=Arabidopsis thaliana GN=ATL81 PE=2
SV=1
Length = 332
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 26/105 (24%)
Query: 3 ENKQCDARLTSPAAFVEGGIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRD 62
EN D+++ ++D D CSICL F D D +R
Sbjct: 127 ENLGLDSKIIESFPEYPYSVKDHGTDQCSICLTEFMDDDT---------IRL-------- 169
Query: 63 LGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDPT 107
+++C H FH C+ W + CP+C + + ++D T
Sbjct: 170 ---------ISTCNHSFHTICIDLWFEGHKTCPVCRRELDVEDRT 205
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 33/98 (33%), Gaps = 26/98 (26%)
Query: 14 PAAFVEGGIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLT 73
P GI D C ICL F D + V L
Sbjct: 98 PVGLYGSGIIDMKATECLICLGDFEDGEKVRV--------------------------LP 131
Query: 74 SCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDPTRFCV 111
C H FH++C+ W S CP C Q + L+ P+ V
Sbjct: 132 KCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSPMAV 169
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 28/77 (36%)
Query: 23 QDACDDA--CSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFH 80
QD+C D CSICL D + + L C H FH
Sbjct: 118 QDSCKDGLECSICLSELVKGDKARL--------------------------LPKCNHSFH 151
Query: 81 LQCVLEWCQRSSQCPMC 97
++C+ W Q S CP+C
Sbjct: 152 VECIDMWFQSHSTCPIC 168
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 58 VILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPI 101
+ L+D+ + L C H FHL CV +W R CP+C Q +
Sbjct: 178 ICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQAV 221
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 74 SCRHEFHLQCVLEWCQRSSQCPMCWQPIS 102
+C H F C+ EW R +CPMCWQ I+
Sbjct: 406 NCAHSFCQHCISEWRNRKDKCPMCWQNIT 434
>sp|Q54S31|PEX10_DICDI Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum
GN=pex10 PE=3 SV=2
Length = 374
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 73 TSCRHEFHLQCVLEWCQRSSQCPMCWQPISLK 104
T C H F C+ EWC QCP+C PIS++
Sbjct: 335 TICGHLFCWHCITEWCNNKEQCPVCRCPISIR 366
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 29/91 (31%)
Query: 18 VEGGIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRH 77
++G +D C+IC F+ S ++T C H
Sbjct: 535 IKGSRLQEINDVCAICYHEFTTSA-----------------------------RITPCNH 565
Query: 78 EFHLQCVLEWCQRSSQCPMCWQPISLKDPTR 108
FH C+ +W CPMC Q + ++D +
Sbjct: 566 YFHALCLRKWLYIQDTCPMCHQKVYIEDDIK 596
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 29/91 (31%)
Query: 18 VEGGIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRH 77
++G +D C+IC F+ S ++T C H
Sbjct: 535 IKGSRLQEINDVCAICYHEFTTSA-----------------------------RITPCNH 565
Query: 78 EFHLQCVLEWCQRSSQCPMCWQPISLKDPTR 108
FH C+ +W CPMC Q + ++D +
Sbjct: 566 YFHALCLRKWLYIQDTCPMCHQKVYIEDDIK 596
>sp|Q9M0R4|ATL37_ARATH Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana
GN=ATL37 PE=3 SV=1
Length = 357
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 32/90 (35%)
Query: 20 GGIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEF 79
GG++ C+ICL F D +P L + C H F
Sbjct: 116 GGVE------CAICLCEFEDEEP--------------------------LRWMPPCSHTF 143
Query: 80 HLQCVLEWCQRSSQCPMCWQPISLKDPTRF 109
H C+ EW S CP+C +SLK F
Sbjct: 144 HANCIDEWLSSRSTCPVCRANLSLKSGDSF 173
>sp|P38239|YBR2_YEAST Uncharacterized RING finger protein YBR062C OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YBR062C PE=1
SV=2
Length = 180
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 66 FSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMC 97
+ L+++L C H+F L+C+ W RS+ CP+C
Sbjct: 121 YPLVVELPHCHHKFDLECLSVWLSRSTTCPLC 152
>sp|Q84TF5|RHA4A_ARATH RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A
PE=2 SV=1
Length = 174
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 63 LGNFSL---LLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISL 103
LG F L L+++ C+H FHL C+ W + CP+C +S+
Sbjct: 109 LGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSVSI 152
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 26/80 (32%)
Query: 28 DACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEW 87
+ CS+CL F + D V L C H FH+ C+ W
Sbjct: 111 EECSVCLSEFEEDDEGRV--------------------------LPKCGHVFHVDCIDTW 144
Query: 88 CQRSSQCPMCWQPISLKDPT 107
+ S CP+C P+ P
Sbjct: 145 FRSRSSCPLCRAPVQPAQPV 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.127 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,225,659
Number of Sequences: 539616
Number of extensions: 6344691
Number of successful extensions: 66690
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 820
Number of HSP's that attempted gapping in prelim test: 48241
Number of HSP's gapped (non-prelim): 14069
length of query: 444
length of database: 191,569,459
effective HSP length: 121
effective length of query: 323
effective length of database: 126,275,923
effective search space: 40787123129
effective search space used: 40787123129
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)