Query 013396
Match_columns 444
No_of_seqs 240 out of 1521
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:26:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12861 zf-Apc11: Anaphase-pr 99.4 1.3E-13 2.8E-18 115.6 4.2 63 25-104 19-84 (85)
2 PF12678 zf-rbx1: RING-H2 zinc 99.3 8.1E-13 1.7E-17 106.5 3.0 55 27-98 19-73 (73)
3 PF13639 zf-RING_2: Ring finge 99.2 1.2E-12 2.6E-17 94.9 0.6 44 28-98 1-44 (44)
4 COG5194 APC11 Component of SCF 99.2 3.9E-12 8.5E-17 106.0 2.9 76 13-105 9-84 (88)
5 KOG1493 Anaphase-promoting com 99.2 2.4E-12 5.2E-17 106.6 1.5 62 26-104 19-83 (84)
6 PHA02929 N1R/p28-like protein; 99.1 5E-11 1.1E-15 115.9 4.7 72 10-103 154-228 (238)
7 KOG4628 Predicted E3 ubiquitin 99.0 8.7E-11 1.9E-15 119.5 3.3 51 28-105 230-281 (348)
8 COG5243 HRD1 HRD ubiquitin lig 99.0 1.5E-10 3.3E-15 118.5 4.1 76 4-101 268-344 (491)
9 PLN03208 E3 ubiquitin-protein 98.9 1.2E-09 2.6E-14 103.7 4.4 52 24-105 15-82 (193)
10 smart00504 Ubox Modified RING 98.9 2.7E-09 6E-14 81.2 4.6 53 27-109 1-53 (63)
11 KOG2930 SCF ubiquitin ligase, 98.8 4E-10 8.6E-15 98.0 -0.8 78 10-103 32-109 (114)
12 PF13920 zf-C3HC4_3: Zinc fing 98.8 3.2E-09 6.9E-14 79.1 3.1 46 27-102 2-48 (50)
13 PF15227 zf-C3HC4_4: zinc fing 98.8 5.1E-09 1.1E-13 76.7 3.3 38 30-97 1-42 (42)
14 PHA02926 zinc finger-like prot 98.8 4.9E-09 1.1E-13 101.6 4.0 63 23-107 166-235 (242)
15 KOG0317 Predicted E3 ubiquitin 98.7 7.3E-09 1.6E-13 103.2 4.3 53 23-105 235-287 (293)
16 PF13923 zf-C3HC4_2: Zinc fing 98.7 8.1E-09 1.7E-13 73.5 2.7 38 30-97 1-39 (39)
17 cd00162 RING RING-finger (Real 98.7 1.3E-08 2.9E-13 70.5 3.0 28 74-101 17-45 (45)
18 TIGR00599 rad18 DNA repair pro 98.7 2.4E-08 5.1E-13 103.5 5.4 59 26-114 25-83 (397)
19 KOG0320 Predicted E3 ubiquitin 98.6 1.2E-08 2.7E-13 95.9 2.6 50 28-105 132-181 (187)
20 KOG0823 Predicted E3 ubiquitin 98.6 1.7E-08 3.7E-13 97.9 3.4 55 23-107 43-100 (230)
21 COG5540 RING-finger-containing 98.6 1.3E-08 2.7E-13 102.5 2.2 49 28-103 324-373 (374)
22 KOG0802 E3 ubiquitin ligase [P 98.6 2E-08 4.3E-13 106.8 2.1 54 25-103 289-342 (543)
23 PF04564 U-box: U-box domain; 98.5 1E-07 2.3E-12 76.5 4.7 65 27-121 4-70 (73)
24 PF00097 zf-C3HC4: Zinc finger 98.5 6.1E-08 1.3E-12 68.8 2.8 38 30-97 1-41 (41)
25 smart00184 RING Ring finger. E 98.5 1.3E-07 2.8E-12 63.2 3.7 24 74-97 15-39 (39)
26 KOG2164 Predicted E3 ubiquitin 98.4 1.5E-07 3.3E-12 99.7 2.6 50 27-106 186-240 (513)
27 KOG0287 Postreplication repair 98.4 2.1E-07 4.5E-12 95.0 3.0 59 27-115 23-81 (442)
28 PF14634 zf-RING_5: zinc-RING 98.3 3.6E-07 7.8E-12 66.9 3.1 44 29-99 1-44 (44)
29 KOG0828 Predicted E3 ubiquitin 98.2 4.4E-07 9.5E-12 96.1 2.6 33 70-102 601-634 (636)
30 COG5574 PEX10 RING-finger-cont 98.2 6.2E-07 1.3E-11 88.8 3.0 51 25-105 213-265 (271)
31 KOG2177 Predicted E3 ubiquitin 98.2 4.6E-07 1E-11 81.4 1.9 45 25-99 11-55 (386)
32 PF13445 zf-RING_UBOX: RING-ty 98.0 2.9E-06 6.2E-11 63.1 2.6 39 30-95 1-43 (43)
33 COG5432 RAD18 RING-finger-cont 97.9 5.6E-06 1.2E-10 83.5 3.3 52 27-108 25-76 (391)
34 PF11793 FANCL_C: FANCL C-term 97.8 2.5E-06 5.4E-11 68.8 -0.8 30 74-103 27-67 (70)
35 TIGR00570 cdk7 CDK-activating 97.8 1.5E-05 3.3E-10 80.7 4.5 33 74-106 25-58 (309)
36 KOG1734 Predicted RING-contain 97.8 4.1E-06 8.8E-11 83.7 0.3 61 25-105 222-284 (328)
37 PF14835 zf-RING_6: zf-RING of 97.7 1.2E-05 2.5E-10 65.1 1.4 54 28-112 8-61 (65)
38 KOG1039 Predicted E3 ubiquitin 97.7 2.2E-05 4.9E-10 80.5 3.7 64 21-106 155-225 (344)
39 KOG0827 Predicted E3 ubiquitin 97.7 1.9E-05 4.1E-10 82.1 2.5 29 71-99 22-53 (465)
40 COG5219 Uncharacterized conser 97.6 1.6E-05 3.5E-10 89.4 0.7 54 23-102 1465-1523(1525)
41 smart00744 RINGv The RING-vari 97.5 9.3E-05 2E-09 56.1 2.9 25 74-98 18-49 (49)
42 KOG1002 Nucleotide excision re 97.4 6E-05 1.3E-09 81.0 2.4 117 23-176 532-665 (791)
43 KOG0804 Cytoplasmic Zn-finger 97.4 9E-05 1.9E-09 78.2 2.2 50 25-102 173-222 (493)
44 KOG0824 Predicted E3 ubiquitin 97.3 0.00011 2.3E-09 74.5 2.6 48 27-104 7-55 (324)
45 KOG0311 Predicted E3 ubiquitin 97.3 3.9E-05 8.5E-10 78.9 -0.9 50 27-105 43-93 (381)
46 KOG0825 PHD Zn-finger protein 97.3 4.6E-05 1E-09 84.6 -0.6 85 21-106 90-175 (1134)
47 KOG4159 Predicted E3 ubiquitin 97.2 0.00022 4.7E-09 74.6 2.7 60 14-103 71-130 (398)
48 KOG0978 E3 ubiquitin ligase in 97.2 0.00013 2.9E-09 80.5 1.0 49 27-105 643-692 (698)
49 KOG4172 Predicted E3 ubiquitin 97.1 0.00014 3.1E-09 57.7 0.6 29 74-102 24-54 (62)
50 KOG1645 RING-finger-containing 96.9 0.00066 1.4E-08 71.2 3.4 50 26-100 3-54 (463)
51 KOG2660 Locus-specific chromos 96.7 0.00063 1.4E-08 69.6 1.4 51 27-106 15-65 (331)
52 PF11789 zf-Nse: Zinc-finger o 96.7 0.0011 2.3E-08 52.0 2.3 41 27-96 11-53 (57)
53 KOG0297 TNF receptor-associate 96.7 0.00078 1.7E-08 69.9 1.8 52 25-105 19-70 (391)
54 KOG4265 Predicted E3 ubiquitin 96.6 0.0016 3.4E-08 67.2 3.4 46 27-102 290-336 (349)
55 KOG1428 Inhibitor of type V ad 96.5 0.0014 3.1E-08 76.8 2.5 30 74-103 3506-3545(3738)
56 KOG4445 Uncharacterized conser 96.4 0.00079 1.7E-08 68.5 0.1 52 27-105 115-189 (368)
57 KOG3970 Predicted E3 ubiquitin 96.1 0.0076 1.6E-07 59.7 5.0 69 26-122 49-125 (299)
58 COG5152 Uncharacterized conser 96.1 0.0028 6.1E-08 61.6 1.9 45 27-101 196-240 (259)
59 KOG1813 Predicted E3 ubiquitin 96.1 0.002 4.3E-08 65.4 0.8 45 28-102 242-286 (313)
60 PHA03096 p28-like protein; Pro 96.0 0.0032 6.9E-08 63.4 1.9 50 28-99 179-231 (284)
61 KOG1785 Tyrosine kinase negati 95.7 0.0054 1.2E-07 64.7 2.1 32 74-105 386-419 (563)
62 KOG1941 Acetylcholine receptor 95.6 0.0047 1E-07 64.9 1.1 50 26-101 364-415 (518)
63 KOG3268 Predicted E3 ubiquitin 95.2 0.013 2.8E-07 56.4 2.7 32 74-105 189-231 (234)
64 PF14570 zf-RING_4: RING/Ubox 95.1 0.02 4.4E-07 44.0 3.0 28 74-101 19-47 (48)
65 COG5175 MOT2 Transcriptional r 95.0 0.019 4.1E-07 59.8 3.4 56 24-105 11-67 (480)
66 PF04641 Rtf2: Rtf2 RING-finge 94.8 0.036 7.8E-07 54.5 4.6 54 25-105 111-164 (260)
67 KOG2879 Predicted E3 ubiquitin 94.7 0.025 5.5E-07 57.2 3.3 32 71-102 254-287 (298)
68 PHA02862 5L protein; Provision 94.7 0.025 5.3E-07 52.7 2.9 29 77-105 26-56 (156)
69 COG5222 Uncharacterized conser 94.6 0.045 9.8E-07 56.2 4.7 53 28-109 275-329 (427)
70 PF05883 Baculo_RING: Baculovi 94.4 0.013 2.9E-07 53.5 0.5 35 27-88 26-66 (134)
71 KOG4692 Predicted E3 ubiquitin 94.4 0.03 6.4E-07 58.6 3.0 53 20-102 415-467 (489)
72 KOG1571 Predicted E3 ubiquitin 94.4 0.022 4.7E-07 59.2 2.0 45 25-102 303-347 (355)
73 PHA02825 LAP/PHD finger-like p 94.1 0.049 1.1E-06 51.3 3.6 31 74-104 26-61 (162)
74 KOG0298 DEAD box-containing he 94.1 0.042 9.1E-07 64.6 3.8 55 74-129 1171-1225(1394)
75 KOG3039 Uncharacterized conser 94.1 0.044 9.5E-07 55.0 3.5 54 53-106 221-274 (303)
76 KOG4185 Predicted E3 ubiquitin 94.1 0.05 1.1E-06 53.5 3.7 53 28-104 4-57 (296)
77 COG5236 Uncharacterized conser 94.0 0.052 1.1E-06 56.7 3.8 69 5-103 37-109 (493)
78 PF10367 Vps39_2: Vacuolar sor 93.8 0.026 5.7E-07 46.6 1.1 33 25-85 76-108 (109)
79 KOG2114 Vacuolar assembly/sort 93.6 0.025 5.5E-07 64.0 0.8 23 74-99 858-880 (933)
80 KOG1814 Predicted E3 ubiquitin 92.6 0.064 1.4E-06 56.8 2.0 45 29-100 186-238 (445)
81 KOG4275 Predicted E3 ubiquitin 92.6 0.021 4.5E-07 58.3 -1.6 41 27-101 300-341 (350)
82 PF10272 Tmpp129: Putative tra 92.0 0.12 2.7E-06 53.8 3.2 32 74-105 310-354 (358)
83 KOG1952 Transcription factor N 91.9 0.078 1.7E-06 60.3 1.7 48 26-99 190-244 (950)
84 KOG4739 Uncharacterized protei 91.8 0.041 8.9E-07 54.3 -0.4 32 72-105 20-51 (233)
85 KOG0826 Predicted E3 ubiquitin 91.8 0.15 3.3E-06 52.8 3.4 53 19-100 292-344 (357)
86 KOG1001 Helicase-like transcri 91.3 0.11 2.3E-06 58.1 2.1 32 74-105 470-503 (674)
87 PF12906 RINGv: RING-variant d 90.9 0.12 2.7E-06 38.9 1.4 20 78-97 26-47 (47)
88 KOG1940 Zn-finger protein [Gen 89.7 0.22 4.8E-06 50.4 2.4 48 26-99 157-204 (276)
89 COG5183 SSM4 Protein involved 88.8 0.35 7.6E-06 55.2 3.4 54 24-105 9-69 (1175)
90 PF08746 zf-RING-like: RING-li 88.7 0.26 5.7E-06 36.6 1.6 24 74-97 18-43 (43)
91 KOG0309 Conserved WD40 repeat- 86.8 0.34 7.4E-06 55.0 1.8 40 52-96 1030-1069(1081)
92 KOG2034 Vacuolar sorting prote 86.3 0.29 6.3E-06 56.0 1.0 37 24-88 814-850 (911)
93 PF03854 zf-P11: P-11 zinc fin 84.8 0.33 7.1E-06 37.8 0.4 30 74-103 17-47 (50)
94 KOG0827 Predicted E3 ubiquitin 84.1 0.069 1.5E-06 56.4 -4.8 32 74-105 217-248 (465)
95 KOG4362 Transcriptional regula 83.8 0.41 8.8E-06 53.7 0.7 49 27-105 21-72 (684)
96 KOG3161 Predicted E3 ubiquitin 82.6 0.6 1.3E-05 52.3 1.4 43 28-99 12-54 (861)
97 KOG3899 Uncharacterized conser 81.9 0.67 1.5E-05 47.8 1.3 32 74-105 324-368 (381)
98 KOG3053 Uncharacterized conser 81.7 1.2 2.7E-05 45.1 3.0 39 77-115 49-95 (293)
99 KOG1812 Predicted E3 ubiquitin 81.0 0.72 1.6E-05 48.3 1.2 17 74-90 167-183 (384)
100 KOG1609 Protein involved in mR 80.3 1.2 2.7E-05 43.2 2.5 28 77-104 107-136 (323)
101 KOG2932 E3 ubiquitin ligase in 80.2 0.89 1.9E-05 47.2 1.5 29 71-101 105-133 (389)
102 KOG3039 Uncharacterized conser 79.5 1.1 2.4E-05 45.4 1.8 32 27-88 43-74 (303)
103 PF07800 DUF1644: Protein of u 78.6 2.8 6E-05 39.8 4.1 11 26-36 1-11 (162)
104 KOG0825 PHD Zn-finger protein 78.5 1.7 3.6E-05 49.9 3.0 28 74-101 120-153 (1134)
105 KOG4367 Predicted Zn-finger pr 78.0 1.2 2.6E-05 48.2 1.7 34 26-89 3-36 (699)
106 KOG3800 Predicted E3 ubiquitin 76.3 2.2 4.7E-05 43.8 2.9 34 71-104 19-53 (300)
107 KOG3002 Zn finger protein [Gen 75.1 2 4.3E-05 43.9 2.4 43 26-102 47-91 (299)
108 KOG0269 WD40 repeat-containing 74.1 1.8 4E-05 49.2 1.9 23 74-96 798-820 (839)
109 KOG2066 Vacuolar assembly/sort 73.7 1.4 3E-05 50.3 0.9 51 23-97 780-830 (846)
110 PF02891 zf-MIZ: MIZ/SP-RING z 71.8 4.7 0.0001 30.8 3.1 26 74-100 20-50 (50)
111 PF14447 Prok-RING_4: Prokaryo 71.5 1.9 4.2E-05 34.3 1.0 30 74-105 24-53 (55)
112 KOG4718 Non-SMC (structural ma 70.5 2.3 4.9E-05 42.2 1.4 28 74-101 199-226 (235)
113 PF05290 Baculo_IE-1: Baculovi 69.2 4.5 9.8E-05 37.5 3.0 31 74-104 101-134 (140)
114 KOG3113 Uncharacterized conser 65.8 9.3 0.0002 39.0 4.6 30 74-105 132-161 (293)
115 KOG2817 Predicted E3 ubiquitin 63.1 5.9 0.00013 42.2 2.8 50 50-100 331-383 (394)
116 KOG1815 Predicted E3 ubiquitin 60.2 6.9 0.00015 41.5 2.8 39 23-90 66-104 (444)
117 COG5220 TFB3 Cdk activating ki 60.0 4 8.7E-05 41.4 0.9 31 71-101 30-63 (314)
118 KOG3579 Predicted E3 ubiquitin 59.4 4.4 9.4E-05 41.9 1.1 42 20-91 261-306 (352)
119 KOG2068 MOT2 transcription fac 51.3 13 0.00028 38.9 2.9 49 28-102 250-298 (327)
120 PF14446 Prok-RING_1: Prokaryo 50.8 15 0.00032 29.3 2.5 33 27-85 5-37 (54)
121 KOG1812 Predicted E3 ubiquitin 48.8 7 0.00015 41.1 0.6 26 74-99 328-353 (384)
122 KOG3005 GIY-YIG type nuclease 47.5 11 0.00023 38.6 1.6 51 28-101 183-242 (276)
123 PF09397 Ftsk_gamma: Ftsk gamm 47.1 12 0.00027 30.4 1.7 25 370-394 24-48 (65)
124 PLN02189 cellulose synthase 45.6 17 0.00038 43.0 3.2 54 26-102 33-87 (1040)
125 TIGR00622 ssl1 transcription f 42.8 30 0.00065 31.1 3.5 26 73-98 85-110 (112)
126 KOG3842 Adaptor protein Pellin 42.3 25 0.00055 37.1 3.4 34 71-104 374-416 (429)
127 KOG1100 Predicted E3 ubiquitin 42.1 12 0.00027 36.3 1.2 24 74-101 175-199 (207)
128 COG5109 Uncharacterized conser 41.2 18 0.00039 38.1 2.2 49 49-98 332-383 (396)
129 PF13901 DUF4206: Domain of un 41.1 18 0.00038 34.7 2.0 21 74-99 177-197 (202)
130 KOG2807 RNA polymerase II tran 40.9 20 0.00044 37.8 2.5 25 74-98 350-374 (378)
131 PF14569 zf-UDP: Zinc-binding 40.3 38 0.00082 29.0 3.6 56 26-104 8-64 (80)
132 smart00249 PHD PHD zinc finger 39.7 16 0.00036 25.1 1.2 13 74-86 19-31 (47)
133 PLN02436 cellulose synthase A 39.6 25 0.00053 42.0 3.2 29 74-102 60-89 (1094)
134 PLN02638 cellulose synthase A 39.0 26 0.00055 41.9 3.2 54 26-102 16-70 (1079)
135 KOG0802 E3 ubiquitin ligase [P 38.2 15 0.00034 39.9 1.2 29 74-105 495-523 (543)
136 PLN02195 cellulose synthase A 37.2 41 0.00088 39.9 4.4 54 26-103 5-60 (977)
137 PF04710 Pellino: Pellino; In 36.7 12 0.00025 40.3 0.0 30 69-101 303-338 (416)
138 PF06844 DUF1244: Protein of u 36.0 19 0.00042 29.9 1.2 13 78-90 11-23 (68)
139 smart00843 Ftsk_gamma This dom 34.4 25 0.00054 28.6 1.6 26 370-395 23-48 (63)
140 PLN02400 cellulose synthase 33.3 29 0.00063 41.4 2.5 54 26-102 35-89 (1085)
141 KOG0824 Predicted E3 ubiquitin 32.8 15 0.00031 38.3 -0.0 29 74-102 123-151 (324)
142 PLN02915 cellulose synthase A 31.5 42 0.00092 40.0 3.4 54 26-102 14-68 (1044)
143 KOG2231 Predicted E3 ubiquitin 30.9 35 0.00077 38.8 2.6 31 71-101 14-51 (669)
144 KOG1829 Uncharacterized conser 30.5 16 0.00036 40.7 -0.1 23 74-99 536-558 (580)
145 smart00132 LIM Zinc-binding do 28.1 26 0.00056 23.4 0.6 19 75-101 19-37 (39)
146 KOG4185 Predicted E3 ubiquitin 28.0 6.4 0.00014 38.8 -3.4 53 25-100 205-265 (296)
147 PF07975 C1_4: TFIIH C1-like d 27.0 39 0.00084 26.5 1.5 26 72-97 24-49 (51)
148 smart00647 IBR In Between Ring 26.9 11 0.00024 28.3 -1.5 15 74-88 45-59 (64)
149 KOG1815 Predicted E3 ubiquitin 25.9 34 0.00074 36.4 1.3 14 74-87 183-196 (444)
150 PF10571 UPF0547: Uncharacteri 25.1 45 0.00097 22.7 1.3 11 29-39 2-12 (26)
151 COG5627 MMS21 DNA repair prote 23.8 65 0.0014 32.8 2.7 31 74-104 207-241 (275)
152 PF10497 zf-4CXXC_R1: Zinc-fin 23.1 79 0.0017 27.7 2.8 25 76-100 37-70 (105)
153 KOG2979 Protein involved in DN 22.4 51 0.0011 33.7 1.7 25 74-98 194-220 (262)
154 KOG1973 Chromatin remodeling p 21.0 32 0.0007 34.5 0.0 28 74-101 239-269 (274)
155 KOG0956 PHD finger protein AF1 20.9 65 0.0014 37.2 2.3 56 29-99 7-70 (900)
156 PF04216 FdhE: Protein involve 20.7 22 0.00047 35.5 -1.3 25 75-99 195-219 (290)
157 PF01363 FYVE: FYVE zinc finge 20.6 22 0.00049 27.7 -1.0 39 24-88 6-44 (69)
158 smart00064 FYVE Protein presen 20.1 1E+02 0.0022 23.9 2.7 16 74-89 31-46 (68)
No 1
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.41 E-value=1.3e-13 Score=115.61 Aligned_cols=63 Identities=41% Similarity=0.870 Sum_probs=52.0
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc---CCCCCCcccCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR---SSQCPMCWQPI 101 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~---sssCP~CRq~i 101 (444)
.+|+.|.||+..|...++.+..++| .++++++.|+|.||.+||.+|++. ..+|||||+++
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd-----------------~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGD-----------------DCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCC-----------------CCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 3489999999999998888777433 235667799999999999999976 35899999998
Q ss_pred CCC
Q 013396 102 SLK 104 (444)
Q Consensus 102 ~~k 104 (444)
..+
T Consensus 82 ~~k 84 (85)
T PF12861_consen 82 KFK 84 (85)
T ss_pred eeC
Confidence 765
No 2
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.32 E-value=8.1e-13 Score=106.55 Aligned_cols=55 Identities=33% Similarity=0.847 Sum_probs=41.7
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcc
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCW 98 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CR 98 (444)
++.|+||++.|.+.++....+. ..+.++++.|||.||.+||.+|++...+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~-----------------~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQ-----------------DECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCT-----------------TTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCc-----------------cccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 5569999999987665443311 123445568999999999999999999999997
No 3
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.25 E-value=1.2e-12 Score=94.93 Aligned_cols=44 Identities=50% Similarity=1.180 Sum_probs=36.2
Q ss_pred CcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcc
Q 013396 28 DACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCW 98 (444)
Q Consensus 28 d~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CR 98 (444)
+.|+||++.|..+.. ++.| +|||.||..||.+|++.+..||+||
T Consensus 1 d~C~IC~~~~~~~~~--------------~~~l-------------~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEK--------------VVKL-------------PCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSC--------------EEEE-------------TTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCe--------------EEEc-------------cCCCeeCHHHHHHHHHhCCcCCccC
Confidence 479999999976443 3444 7999999999999999999999997
No 4
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.23 E-value=3.9e-12 Score=106.05 Aligned_cols=76 Identities=24% Similarity=0.440 Sum_probs=62.7
Q ss_pred CchhhhcCCCCCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCC
Q 013396 13 SPAAFVEGGIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSS 92 (444)
Q Consensus 13 S~~a~ve~~iqd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~ss 92 (444)
.+.+++..++. -+.|+||+..|.+.++++...- .-.++++++++.|+|.||.+||.+||++..
T Consensus 9 ~aVa~Wswdi~---id~CaICRnhim~~C~eCq~~~--------------~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~ 71 (88)
T COG5194 9 HAVALWSWDIP---IDVCAICRNHIMGTCPECQFGM--------------TPGDECPVVWGVCNHAFHDHCIYRWLDTKG 71 (88)
T ss_pred eEEEEEecccc---cchhhhhhccccCcCcccccCC--------------CCCCcceEEEEecchHHHHHHHHHHHhhCC
Confidence 34677777776 4899999999999998886610 124567889999999999999999999999
Q ss_pred CCCCcccCCCCCC
Q 013396 93 QCPMCWQPISLKD 105 (444)
Q Consensus 93 sCP~CRq~i~~k~ 105 (444)
.||+||+.+...+
T Consensus 72 ~CPld~q~w~~~~ 84 (88)
T COG5194 72 VCPLDRQTWVLAD 84 (88)
T ss_pred CCCCCCceeEEec
Confidence 9999999987654
No 5
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.4e-12 Score=106.55 Aligned_cols=62 Identities=37% Similarity=0.778 Sum_probs=52.0
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC---CCCCCcccCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS---SQCPMCWQPIS 102 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s---ssCP~CRq~i~ 102 (444)
.+++|.||+-.|...++.++.++| .++++++.|.|.||.+||.+|+... .+|||||+.|.
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgD-----------------dCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGD-----------------DCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCC-----------------CCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 356999999999999999988544 3466788999999999999999653 47999999986
Q ss_pred CC
Q 013396 103 LK 104 (444)
Q Consensus 103 ~k 104 (444)
.+
T Consensus 82 ~~ 83 (84)
T KOG1493|consen 82 FK 83 (84)
T ss_pred ec
Confidence 54
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.11 E-value=5e-11 Score=115.91 Aligned_cols=72 Identities=24% Similarity=0.575 Sum_probs=49.0
Q ss_pred hhcCchhhhc---CCCCCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHH
Q 013396 10 RLTSPAAFVE---GGIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLE 86 (444)
Q Consensus 10 ~l~S~~a~ve---~~iqd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~ 86 (444)
-+.+.+.++. .......+..|+||++.+.+...... + ..++++|+|.||..||.+
T Consensus 154 ~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~----------~------------~~vl~~C~H~FC~~CI~~ 211 (238)
T PHA02929 154 FLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNM----------Y------------FGILSNCNHVFCIECIDI 211 (238)
T ss_pred HHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccc----------c------------ceecCCCCCcccHHHHHH
Confidence 3444455542 22234557899999999876321100 0 112338999999999999
Q ss_pred HhccCCCCCCcccCCCC
Q 013396 87 WCQRSSQCPMCWQPISL 103 (444)
Q Consensus 87 Wlk~sssCP~CRq~i~~ 103 (444)
|++...+||+||..+..
T Consensus 212 Wl~~~~tCPlCR~~~~~ 228 (238)
T PHA02929 212 WKKEKNTCPVCRTPFIS 228 (238)
T ss_pred HHhcCCCCCCCCCEeeE
Confidence 99999999999998753
No 7
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=8.7e-11 Score=119.51 Aligned_cols=51 Identities=37% Similarity=0.969 Sum_probs=43.0
Q ss_pred CcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC-CCCCCcccCCCCCC
Q 013396 28 DACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS-SQCPMCWQPISLKD 105 (444)
Q Consensus 28 d~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s-ssCP~CRq~i~~k~ 105 (444)
+.|+||+|.|..++... +| +|+|.||..||..|+... ..||+||+.+....
T Consensus 230 ~~CaIClEdY~~GdklR--------------iL-------------PC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLR--------------IL-------------PCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred ceEEEeecccccCCeee--------------Ee-------------cCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 59999999999988643 34 899999999999999775 56999999876544
No 8
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.5e-10 Score=118.54 Aligned_cols=76 Identities=26% Similarity=0.658 Sum_probs=51.4
Q ss_pred ccchhhhhcCchhhhcCCCCCCCCCcccccccCCCCCC-CCcccccccccceeeeeeeccCCccccccccCCCCChhcHH
Q 013396 4 NKQCDARLTSPAAFVEGGIQDACDDACSICLEPFSDSD-PSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQ 82 (444)
Q Consensus 4 ~~~~~~~l~S~~a~ve~~iqd~~Dd~CsICLE~F~~~~-~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~ 82 (444)
+|+.++.+..+.... ...+|..|.||||.+-..+ ......+| +-|..| +|||+||.+
T Consensus 268 ~kdl~~~~~t~t~eq----l~n~D~~C~ICmde~~h~~~~~~~~~~~-----~~pKrL-------------pCGHilHl~ 325 (491)
T COG5243 268 TKDLNAMYPTATEEQ----LTNSDRTCTICMDEMFHPDHEPLPRGLD-----MTPKRL-------------PCGHILHLH 325 (491)
T ss_pred hhHHHhhcchhhhhh----hcCCCCeEEEecccccCCCCccCccccc-----CCcccc-------------cccceeeHH
Confidence 355555554332221 2456889999999955443 22211111 225556 899999999
Q ss_pred HHHHHhccCCCCCCcccCC
Q 013396 83 CVLEWCQRSSQCPMCWQPI 101 (444)
Q Consensus 83 CI~~Wlk~sssCP~CRq~i 101 (444)
|++.|++++++||+||.++
T Consensus 326 CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 326 CLKNWLERQQTCPICRRPV 344 (491)
T ss_pred HHHHHHHhccCCCcccCcc
Confidence 9999999999999999984
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.89 E-value=1.2e-09 Score=103.68 Aligned_cols=52 Identities=31% Similarity=0.741 Sum_probs=41.6
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc-------------
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR------------- 90 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~------------- 90 (444)
..++..|+||++.+.+ ||++ .|||.||..||.+|+..
T Consensus 15 ~~~~~~CpICld~~~d-----------------PVvT-------------~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~ 64 (193)
T PLN03208 15 SGGDFDCNICLDQVRD-----------------PVVT-------------LCGHLFCWPCIHKWTYASNNSRQRVDQYDH 64 (193)
T ss_pred CCCccCCccCCCcCCC-----------------cEEc-------------CCCchhHHHHHHHHHHhccccccccccccc
Confidence 3456789999998866 5556 89999999999999842
Q ss_pred ---CCCCCCcccCCCCCC
Q 013396 91 ---SSQCPMCWQPISLKD 105 (444)
Q Consensus 91 ---sssCP~CRq~i~~k~ 105 (444)
...||+||..+....
T Consensus 65 ~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 65 KREPPKCPVCKSDVSEAT 82 (193)
T ss_pred cCCCCcCCCCCCcCChhc
Confidence 237999999986544
No 10
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.86 E-value=2.7e-09 Score=81.20 Aligned_cols=53 Identities=25% Similarity=0.419 Sum_probs=44.5
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDP 106 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~~ 106 (444)
+..|+||++.|.+ ||++ +|||.|++.||.+|++....||+|++.+...+.
T Consensus 1 ~~~Cpi~~~~~~~-----------------Pv~~-------------~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l 50 (63)
T smart00504 1 EFLCPISLEVMKD-----------------PVIL-------------PSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDL 50 (63)
T ss_pred CcCCcCCCCcCCC-----------------CEEC-------------CCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhc
Confidence 3579999999887 6666 899999999999999888899999999866554
Q ss_pred Ccc
Q 013396 107 TRF 109 (444)
Q Consensus 107 ~~~ 109 (444)
.++
T Consensus 51 ~~~ 53 (63)
T smart00504 51 IPN 53 (63)
T ss_pred eeC
Confidence 443
No 11
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4e-10 Score=98.03 Aligned_cols=78 Identities=19% Similarity=0.374 Sum_probs=60.9
Q ss_pred hhcCchhhhcCCCCCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhc
Q 013396 10 RLTSPAAFVEGGIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQ 89 (444)
Q Consensus 10 ~l~S~~a~ve~~iqd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk 89 (444)
|.=.+.|++.++|. -+.|+||+..+.+.|..+... . .....++.+++|.|+|.||.+||.+|++
T Consensus 32 KKWnAvAlWaWDi~---vDnCAICRnHIMd~CieCQa~------------~-~~~~~EC~VaWG~CNHaFH~hCisrWlk 95 (114)
T KOG2930|consen 32 KKWNAVALWAWDIV---VDNCAICRNHIMDLCIECQAN------------Q-SATSEECTVAWGVCNHAFHFHCISRWLK 95 (114)
T ss_pred eeeeeeeeeeeeee---echhHHHHHHHHHHHHhhccC------------C-CCCCCceEEEeeecchHHHHHHHHHHHh
Confidence 34456788877775 578999999998876555441 0 0134567889999999999999999999
Q ss_pred cCCCCCCcccCCCC
Q 013396 90 RSSQCPMCWQPISL 103 (444)
Q Consensus 90 ~sssCP~CRq~i~~ 103 (444)
+...||+|.+.+..
T Consensus 96 tr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 96 TRNVCPLDNKEWVF 109 (114)
T ss_pred hcCcCCCcCcceeE
Confidence 99999999888754
No 12
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.80 E-value=3.2e-09 Score=79.10 Aligned_cols=46 Identities=43% Similarity=0.966 Sum_probs=38.6
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCCh-hcHHHHHHHhccCCCCCCcccCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHE-FHLQCVLEWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~-FH~~CI~~Wlk~sssCP~CRq~i~ 102 (444)
+..|.||++...+ ++++ +|||. ||..|+.+|++....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~-----------------~~~~-------------pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD-----------------VVLL-------------PCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS-----------------EEEE-------------TTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc-----------------eEEe-------------CCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5789999998655 4555 89999 999999999999999999999875
No 13
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.77 E-value=5.1e-09 Score=76.74 Aligned_cols=38 Identities=39% Similarity=0.926 Sum_probs=30.2
Q ss_pred ccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC----CCCCCc
Q 013396 30 CSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS----SQCPMC 97 (444)
Q Consensus 30 CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s----ssCP~C 97 (444)
|+||++.|.+ ||+| +|||.||..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~-----------------Pv~l-------------~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD-----------------PVSL-------------PCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS-----------------EEE--------------SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC-----------------cccc-------------CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999988 8999 899999999999999764 369998
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=98.76 E-value=4.9e-09 Score=101.64 Aligned_cols=63 Identities=22% Similarity=0.524 Sum_probs=44.1
Q ss_pred CCCCCCcccccccCCCCCC-CCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC------CCCC
Q 013396 23 QDACDDACSICLEPFSDSD-PSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS------SQCP 95 (444)
Q Consensus 23 qd~~Dd~CsICLE~F~~~~-~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s------ssCP 95 (444)
+...|..|+||||...+.. +... ++. .+++|+|.||..||..|.+.. ..||
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eR----------rFG------------IL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCP 223 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDR----------YFG------------LLDSCNHIFCITCINIWHRTRRETGASDNCP 223 (242)
T ss_pred hccCCCCCccCccccccccccccc----------ccc------------ccCCCCchHHHHHHHHHHHhccccCcCCcCC
Confidence 4456789999999875431 1100 122 234899999999999999753 3699
Q ss_pred CcccCCCCCCCC
Q 013396 96 MCWQPISLKDPT 107 (444)
Q Consensus 96 ~CRq~i~~k~~~ 107 (444)
+||+.+....+.
T Consensus 224 iCR~~f~~I~pS 235 (242)
T PHA02926 224 ICRTRFRNITMS 235 (242)
T ss_pred CCcceeeeeccc
Confidence 999988765543
No 15
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=7.3e-09 Score=103.16 Aligned_cols=53 Identities=34% Similarity=0.871 Sum_probs=42.7
Q ss_pred CCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCC
Q 013396 23 QDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 23 qd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~ 102 (444)
....+..|.||||...+.. .++|||+||..||.+|+.....||+||+.+.
T Consensus 235 i~~a~~kC~LCLe~~~~pS------------------------------aTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPS------------------------------ATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCCCCCceEEEecCCCCCC------------------------------cCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 3455678999999865521 2289999999999999999999999999886
Q ss_pred CCC
Q 013396 103 LKD 105 (444)
Q Consensus 103 ~k~ 105 (444)
...
T Consensus 285 psk 287 (293)
T KOG0317|consen 285 PSK 287 (293)
T ss_pred Ccc
Confidence 543
No 16
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.71 E-value=8.1e-09 Score=73.53 Aligned_cols=38 Identities=34% Similarity=1.059 Sum_probs=31.5
Q ss_pred ccccccCCCCCCCCcccccccccceeee-eeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCc
Q 013396 30 CSICLEPFSDSDPSTVTSFDFHVRFFRV-VILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMC 97 (444)
Q Consensus 30 CsICLE~F~~~~~~~~~~~~~~~~~~~p-ViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~C 97 (444)
|+||++.+.+ | |++ +|||.||..||.+|++....||+|
T Consensus 1 C~iC~~~~~~-----------------~~~~~-------------~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----------------PVVVT-------------PCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----------------EEEEC-------------TTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC-----------------cCEEC-------------CCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998776 4 344 899999999999999888899998
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.68 E-value=1.3e-08 Score=70.50 Aligned_cols=28 Identities=36% Similarity=1.057 Sum_probs=25.1
Q ss_pred CCCChhcHHHHHHHhcc-CCCCCCcccCC
Q 013396 74 SCRHEFHLQCVLEWCQR-SSQCPMCWQPI 101 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~-sssCP~CRq~i 101 (444)
+|+|.||..|+..|++. ...||+|+..+
T Consensus 17 ~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 17 PCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 69999999999999987 67899998754
No 18
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=2.4e-08 Score=103.55 Aligned_cols=59 Identities=22% Similarity=0.432 Sum_probs=46.6
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKD 105 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~ 105 (444)
.+..|+||++.|.. ||++ +|||.||..||..|+.....||+|+..+....
T Consensus 25 ~~l~C~IC~d~~~~-----------------Pvit-------------pCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~ 74 (397)
T TIGR00599 25 TSLRCHICKDFFDV-----------------PVLT-------------SCSHTFCSLCIRRCLSNQPKCPLCRAEDQESK 74 (397)
T ss_pred cccCCCcCchhhhC-----------------ccCC-------------CCCCchhHHHHHHHHhCCCCCCCCCCcccccc
Confidence 46789999999876 5555 89999999999999988888999999987654
Q ss_pred CCccchHHH
Q 013396 106 PTRFCVNFA 114 (444)
Q Consensus 106 ~~~~~~~~a 114 (444)
...+..+..
T Consensus 75 Lr~N~~L~~ 83 (397)
T TIGR00599 75 LRSNWLVSE 83 (397)
T ss_pred CccchHHHH
Confidence 444443333
No 19
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.2e-08 Score=95.89 Aligned_cols=50 Identities=32% Similarity=0.705 Sum_probs=42.0
Q ss_pred CcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCCC
Q 013396 28 DACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKD 105 (444)
Q Consensus 28 d~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~ 105 (444)
-.|+|||+.|.... ||.. +|||+||..||+.-++....||+|++.+..+.
T Consensus 132 ~~CPiCl~~~sek~---------------~vsT-------------kCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 132 YKCPICLDSVSEKV---------------PVST-------------KCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred cCCCceecchhhcc---------------cccc-------------ccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 56999999988732 2333 89999999999999999999999999877664
No 20
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.7e-08 Score=97.87 Aligned_cols=55 Identities=31% Similarity=0.707 Sum_probs=44.0
Q ss_pred CCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC---CCCCCccc
Q 013396 23 QDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS---SQCPMCWQ 99 (444)
Q Consensus 23 qd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s---ssCP~CRq 99 (444)
.+...-.|.||||.-.+ ||++ .|||.||.-||.+|+..+ ..||+||.
T Consensus 43 ~~~~~FdCNICLd~akd-----------------PVvT-------------lCGHLFCWpClyqWl~~~~~~~~cPVCK~ 92 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKD-----------------PVVT-------------LCGHLFCWPCLYQWLQTRPNSKECPVCKA 92 (230)
T ss_pred CCCCceeeeeeccccCC-----------------CEEe-------------ecccceehHHHHHHHhhcCCCeeCCcccc
Confidence 35567789999998555 6666 799999999999999764 47999999
Q ss_pred CCCCCCCC
Q 013396 100 PISLKDPT 107 (444)
Q Consensus 100 ~i~~k~~~ 107 (444)
.+..+...
T Consensus 93 ~Vs~~~vv 100 (230)
T KOG0823|consen 93 EVSIDTVV 100 (230)
T ss_pred ccccceEE
Confidence 88765543
No 21
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.3e-08 Score=102.50 Aligned_cols=49 Identities=39% Similarity=0.958 Sum_probs=40.3
Q ss_pred CcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhc-cCCCCCCcccCCCC
Q 013396 28 DACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQ-RSSQCPMCWQPISL 103 (444)
Q Consensus 28 d~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk-~sssCP~CRq~i~~ 103 (444)
-.|+|||+.|...+ +.++| +|.|.||..||.+|+. -+..||+||..+..
T Consensus 324 veCaICms~fiK~d--------------~~~vl-------------PC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKND--------------RLRVL-------------PCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccc--------------eEEEe-------------ccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 57999999996433 34556 9999999999999997 46799999998753
No 22
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2e-08 Score=106.80 Aligned_cols=54 Identities=33% Similarity=0.721 Sum_probs=43.5
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
..++.|+||+|.+..+... . |.+| +|+|+||..|+..|+++.++||+||..+..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~--~----------~~rL-------------~C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNI--T----------PKRL-------------PCGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred hcCCeeeeechhhcccccc--c----------ccee-------------ecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 4478999999999875431 1 2344 799999999999999999999999995443
No 23
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.53 E-value=1e-07 Score=76.54 Aligned_cols=65 Identities=23% Similarity=0.334 Sum_probs=48.0
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc-CCCCCCcccCCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR-SSQCPMCWQPISLKD 105 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~-sssCP~CRq~i~~k~ 105 (444)
+..|+||.+.|.+ ||++ +|||.|.+.||.+|++. ...||+|++.+...+
T Consensus 4 ~f~CpIt~~lM~d-----------------PVi~-------------~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~ 53 (73)
T PF04564_consen 4 EFLCPITGELMRD-----------------PVIL-------------PSGHTYERSAIERWLEQNGGTDPFTRQPLSESD 53 (73)
T ss_dssp GGB-TTTSSB-SS-----------------EEEE-------------TTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGG
T ss_pred ccCCcCcCcHhhC-----------------ceeC-------------CcCCEEcHHHHHHHHHcCCCCCCCCCCcCCccc
Confidence 5689999999988 8999 89999999999999988 789999999998877
Q ss_pred CCccchHHHH-HHHHHh
Q 013396 106 PTRFCVNFAA-RNYLRR 121 (444)
Q Consensus 106 ~~~~~~~~av-r~~lR~ 121 (444)
..++..+... ..++..
T Consensus 54 l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 54 LIPNRALKSAIEEWCAE 70 (73)
T ss_dssp SEE-HHHHHHHHHHHHH
T ss_pred ceECHHHHHHHHHHHHH
Confidence 7666555443 444443
No 24
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.52 E-value=6.1e-08 Score=68.81 Aligned_cols=38 Identities=50% Similarity=1.281 Sum_probs=32.0
Q ss_pred ccccccCCCCCCCCcccccccccceeeee-eeccCCccccccccCCCCChhcHHHHHHHhc--cCCCCCCc
Q 013396 30 CSICLEPFSDSDPSTVTSFDFHVRFFRVV-ILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQ--RSSQCPMC 97 (444)
Q Consensus 30 CsICLE~F~~~~~~~~~~~~~~~~~~~pV-iL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk--~sssCP~C 97 (444)
|+||++.+.. ++ ++ +|||.||..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~-----------------~~~~~-------------~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED-----------------PVILL-------------PCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS-----------------EEEET-------------TTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC-----------------CCEEe-------------cCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999877 34 33 8999999999999998 45579998
No 25
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.49 E-value=1.3e-07 Score=63.23 Aligned_cols=24 Identities=33% Similarity=1.140 Sum_probs=21.7
Q ss_pred CCCChhcHHHHHHHhc-cCCCCCCc
Q 013396 74 SCRHEFHLQCVLEWCQ-RSSQCPMC 97 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk-~sssCP~C 97 (444)
+|+|.||..|+..|++ ....||+|
T Consensus 15 ~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 15 PCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred cCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8999999999999998 55679998
No 26
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.5e-07 Score=99.65 Aligned_cols=50 Identities=46% Similarity=0.858 Sum_probs=40.4
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC-----CCCCCcccCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS-----SQCPMCWQPI 101 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s-----ssCP~CRq~i 101 (444)
+..|+|||+.... |++ +.|||+||..||..+|... ..||+||..+
T Consensus 186 ~~~CPICL~~~~~-----------------p~~-------------t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I 235 (513)
T KOG2164|consen 186 DMQCPICLEPPSV-----------------PVR-------------TNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTI 235 (513)
T ss_pred CCcCCcccCCCCc-----------------ccc-------------cccCceeeHHHHHHHHhhhcccCCccCCchhhhc
Confidence 7899999998543 233 3799999999999988654 4799999999
Q ss_pred CCCCC
Q 013396 102 SLKDP 106 (444)
Q Consensus 102 ~~k~~ 106 (444)
.+++.
T Consensus 236 ~~kdl 240 (513)
T KOG2164|consen 236 TLKDL 240 (513)
T ss_pred cccce
Confidence 88664
No 27
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.35 E-value=2.1e-07 Score=95.04 Aligned_cols=59 Identities=25% Similarity=0.488 Sum_probs=49.9
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDP 106 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~~ 106 (444)
-..|.||.|.|.. |||+ +|+|.||.-||..+|..+..||.|+..+...+.
T Consensus 23 lLRC~IC~eyf~i-----------------p~it-------------pCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 23 LLRCGICFEYFNI-----------------PMIT-------------PCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHhHHHHHhcC-----------------ceec-------------cccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 3579999999987 5666 999999999999999999999999999988776
Q ss_pred CccchHHHH
Q 013396 107 TRFCVNFAA 115 (444)
Q Consensus 107 ~~~~~~~av 115 (444)
..+..+..+
T Consensus 73 r~n~il~Ei 81 (442)
T KOG0287|consen 73 RNNRILDEI 81 (442)
T ss_pred hhhhHHHHH
Confidence 666555544
No 28
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.34 E-value=3.6e-07 Score=66.87 Aligned_cols=44 Identities=34% Similarity=0.841 Sum_probs=35.2
Q ss_pred cccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCccc
Q 013396 29 ACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQ 99 (444)
Q Consensus 29 ~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq 99 (444)
.|.||++.|.... .|++| +|||+||..||..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~--------------~~~l~-------------~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEER--------------RPRLT-------------SCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCC--------------CeEEc-------------ccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999993321 14555 89999999999999966778999985
No 29
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=4.4e-07 Score=96.09 Aligned_cols=33 Identities=42% Similarity=1.038 Sum_probs=29.3
Q ss_pred cccCCCCChhcHHHHHHHhcc-CCCCCCcccCCC
Q 013396 70 LQLTSCRHEFHLQCVLEWCQR-SSQCPMCWQPIS 102 (444)
Q Consensus 70 ~~l~~CgH~FH~~CI~~Wlk~-sssCP~CRq~i~ 102 (444)
+++++|+|+||..|++.|+.+ ...||+||+++.
T Consensus 601 Ym~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 601 YMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred ccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 577899999999999999995 559999999875
No 30
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=6.2e-07 Score=88.76 Aligned_cols=51 Identities=31% Similarity=0.714 Sum_probs=41.2
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHH-HhccCCC-CCCcccCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLE-WCQRSSQ-CPMCWQPIS 102 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~-Wlk~sss-CP~CRq~i~ 102 (444)
..|..|.||++.... |+.+ +|||+||..||.. |-++... ||+||+...
T Consensus 213 ~~d~kC~lC~e~~~~-----------------ps~t-------------~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEV-----------------PSCT-------------PCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCC-----------------cccc-------------cccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 457889999998554 3333 8999999999999 8877665 999999887
Q ss_pred CCC
Q 013396 103 LKD 105 (444)
Q Consensus 103 ~k~ 105 (444)
++.
T Consensus 263 pk~ 265 (271)
T COG5574 263 PKK 265 (271)
T ss_pred chh
Confidence 665
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.6e-07 Score=81.39 Aligned_cols=45 Identities=33% Similarity=0.792 Sum_probs=38.1
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCccc
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQ 99 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq 99 (444)
.++..|+||++.|... ++| +|+|.||..||..|+.....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p-----------------~~l-------------~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP-----------------VLL-------------PCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC-----------------ccc-------------cccchHhHHHHHHhcCCCcCCcccCC
Confidence 3577899999999883 344 89999999999999885568999995
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.04 E-value=2.9e-06 Score=63.09 Aligned_cols=39 Identities=36% Similarity=0.872 Sum_probs=22.6
Q ss_pred ccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC----CCCC
Q 013396 30 CSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS----SQCP 95 (444)
Q Consensus 30 CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s----ssCP 95 (444)
|+||+| |.+.+- -|++| +|||.||.+||.+|+++. ..||
T Consensus 1 CpIc~e-~~~~~n-------------~P~~L-------------~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEEN-------------PPMVL-------------PCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS--------------EEE--------------SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCC-------------CCEEE-------------eCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 765432 17777 899999999999999754 2576
No 33
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.94 E-value=5.6e-06 Score=83.51 Aligned_cols=52 Identities=21% Similarity=0.352 Sum_probs=43.2
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDP 106 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~~ 106 (444)
-+.|-||-+.|.. |+++ +|||.||.-||...|..+.-||+||.+......
T Consensus 25 ~lrC~IC~~~i~i-----------------p~~T-------------tCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrl 74 (391)
T COG5432 25 MLRCRICDCRISI-----------------PCET-------------TCGHTFCSLCIRRHLGTQPFCPVCREDPCESRL 74 (391)
T ss_pred HHHhhhhhheeec-----------------ceec-------------ccccchhHHHHHHHhcCCCCCccccccHHhhhc
Confidence 3579999998887 4444 899999999999999999999999998765544
Q ss_pred Cc
Q 013396 107 TR 108 (444)
Q Consensus 107 ~~ 108 (444)
..
T Consensus 75 r~ 76 (391)
T COG5432 75 RG 76 (391)
T ss_pred cc
Confidence 33
No 34
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.84 E-value=2.5e-06 Score=68.77 Aligned_cols=30 Identities=50% Similarity=1.121 Sum_probs=18.0
Q ss_pred CCCChhcHHHHHHHhcc---C--------CCCCCcccCCCC
Q 013396 74 SCRHEFHLQCVLEWCQR---S--------SQCPMCWQPISL 103 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~---s--------ssCP~CRq~i~~ 103 (444)
.|++.||..||.+|+.. . ..||.|+.++..
T Consensus 27 ~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 27 SCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp T----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred ccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 79999999999999953 1 259999998754
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=1.5e-05 Score=80.70 Aligned_cols=33 Identities=27% Similarity=0.547 Sum_probs=27.5
Q ss_pred CCCChhcHHHHHHHh-ccCCCCCCcccCCCCCCC
Q 013396 74 SCRHEFHLQCVLEWC-QRSSQCPMCWQPISLKDP 106 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wl-k~sssCP~CRq~i~~k~~ 106 (444)
.|||.||..||...| .....||.|+.++.....
T Consensus 25 ~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 25 VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence 799999999999955 545689999998876653
No 36
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=4.1e-06 Score=83.68 Aligned_cols=61 Identities=30% Similarity=0.679 Sum_probs=42.5
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHh--ccCCCCCCcccCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWC--QRSSQCPMCWQPIS 102 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wl--k~sssCP~CRq~i~ 102 (444)
.+|..|+||-..|..+...... ++---.| .|+|.||..||..|+ .+.++||.|+..+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegv-------ienty~L-------------sCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGV-------IENTYKL-------------SCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhh-------hhhheee-------------ecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 4578899999988764311100 0111122 699999999999998 44678999999887
Q ss_pred CCC
Q 013396 103 LKD 105 (444)
Q Consensus 103 ~k~ 105 (444)
.+.
T Consensus 282 l~r 284 (328)
T KOG1734|consen 282 LKR 284 (328)
T ss_pred Hhh
Confidence 654
No 37
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.73 E-value=1.2e-05 Score=65.08 Aligned_cols=54 Identities=30% Similarity=0.613 Sum_probs=26.3
Q ss_pred CcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCCCCC
Q 013396 28 DACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDPT 107 (444)
Q Consensus 28 d~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~~~ 107 (444)
..|+||.+.|.. ||.| +.|.|+||..||..-+. ..||+|..+...++..
T Consensus 8 LrCs~C~~~l~~-----------------pv~l------------~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 8 LRCSICFDILKE-----------------PVCL------------GGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TS-SSS-S--SS------------------B---------------SSS--B-TTTGGGGTT--TB-SSS--B-S-SS--
T ss_pred cCCcHHHHHhcC-----------------Ccee------------ccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHH
Confidence 479999999887 5554 38999999999987554 3599999988777654
Q ss_pred ccchH
Q 013396 108 RFCVN 112 (444)
Q Consensus 108 ~~~~~ 112 (444)
.+.++
T Consensus 57 ~NrqL 61 (65)
T PF14835_consen 57 INRQL 61 (65)
T ss_dssp --HHH
T ss_pred hhhhh
Confidence 44443
No 38
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=2.2e-05 Score=80.47 Aligned_cols=64 Identities=33% Similarity=0.822 Sum_probs=45.5
Q ss_pred CCCCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHh--cc-----CCC
Q 013396 21 GIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWC--QR-----SSQ 93 (444)
Q Consensus 21 ~iqd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wl--k~-----sss 93 (444)
..+...|..|.||||...+.-+ +.-|..| +++|.|.||..||..|- .+ ...
T Consensus 155 a~~~s~~k~CGICme~i~ek~~----------~~~rfgi------------lpnC~H~~Cl~Cir~wr~~~q~~~~~sks 212 (344)
T KOG1039|consen 155 ALQKSSEKECGICMETINEKAA----------SERRFGI------------LPNCNHSFCLNCIRKWRQATQFESKTSKS 212 (344)
T ss_pred CcCccccccceehhhhccccch----------hhhhccc------------CCCcchhhhhcHhHhhhhhhccccccccC
Confidence 4456778999999999776321 0112222 34799999999999998 33 458
Q ss_pred CCCcccCCCCCCC
Q 013396 94 CPMCWQPISLKDP 106 (444)
Q Consensus 94 CP~CRq~i~~k~~ 106 (444)
||.||.......+
T Consensus 213 CP~CRv~s~~v~p 225 (344)
T KOG1039|consen 213 CPFCRVPSSFVNP 225 (344)
T ss_pred CCcccCccccccc
Confidence 9999998765543
No 39
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.9e-05 Score=82.12 Aligned_cols=29 Identities=31% Similarity=0.966 Sum_probs=24.3
Q ss_pred ccCCCCChhcHHHHHHHhccC---CCCCCccc
Q 013396 71 QLTSCRHEFHLQCVLEWCQRS---SQCPMCWQ 99 (444)
Q Consensus 71 ~l~~CgH~FH~~CI~~Wlk~s---ssCP~CRq 99 (444)
.++.|||+||..|+..|+... ..||+|+-
T Consensus 22 ~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 22 PIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred cccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 444699999999999999873 47999983
No 40
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.61 E-value=1.6e-05 Score=89.40 Aligned_cols=54 Identities=30% Similarity=0.835 Sum_probs=40.7
Q ss_pred CCCCCCcccccccCCCCCC---CCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc--CCCCCCc
Q 013396 23 QDACDDACSICLEPFSDSD---PSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR--SSQCPMC 97 (444)
Q Consensus 23 qd~~Dd~CsICLE~F~~~~---~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~--sssCP~C 97 (444)
+-.+-+.|+||+..+..-+ |...+ +.|.|.||..|+.+|+.. +..||+|
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC--------------------------~TCknKFH~~CLyKWf~Ss~~s~CPlC 1518 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRC--------------------------ATCKNKFHTRCLYKWFASSARSNCPLC 1518 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCcccc--------------------------chhhhhhhHHHHHHHHHhcCCCCCCcc
Confidence 4466789999998877221 33222 269999999999999976 4689999
Q ss_pred ccCCC
Q 013396 98 WQPIS 102 (444)
Q Consensus 98 Rq~i~ 102 (444)
|..+.
T Consensus 1519 Rseit 1523 (1525)
T COG5219 1519 RSEIT 1523 (1525)
T ss_pred ccccc
Confidence 97764
No 41
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.46 E-value=9.3e-05 Score=56.11 Aligned_cols=25 Identities=32% Similarity=0.927 Sum_probs=21.0
Q ss_pred CCC-----ChhcHHHHHHHhccC--CCCCCcc
Q 013396 74 SCR-----HEFHLQCVLEWCQRS--SQCPMCW 98 (444)
Q Consensus 74 ~Cg-----H~FH~~CI~~Wlk~s--ssCP~CR 98 (444)
+|. |.+|..||.+|+..+ ..||+|+
T Consensus 18 PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 18 PCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 675 899999999999554 4899995
No 42
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.45 E-value=6e-05 Score=81.01 Aligned_cols=117 Identities=21% Similarity=0.402 Sum_probs=71.0
Q ss_pred CCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc-----CCCCCCc
Q 013396 23 QDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR-----SSQCPMC 97 (444)
Q Consensus 23 qd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~-----sssCP~C 97 (444)
.+.++..|.+|.++-.+ ++.. .|+|.||+.||.++... .-+||.|
T Consensus 532 enk~~~~C~lc~d~aed-----------------~i~s-------------~ChH~FCrlCi~eyv~~f~~~~nvtCP~C 581 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAED-----------------YIES-------------SCHHKFCRLCIKEYVESFMENNNVTCPVC 581 (791)
T ss_pred cccCceeecccCChhhh-----------------hHhh-------------hhhHHHHHHHHHHHHHhhhcccCCCCccc
Confidence 44567789999987544 2222 89999999999998754 3589999
Q ss_pred ccCCCCCCCCccchHHHHHHHHHhcccCCCeeeeeecCChh----HHHHHhhh--------cccchhhhhhhhhhhhhhh
Q 013396 98 WQPISLKDPTRFCVNFAARNYLRRSNKRGALVLIRLEIPPY----FIIRLWET--------LSYRVFVFCLWASFRQQYQ 165 (444)
Q Consensus 98 Rq~i~~k~~~~~~~~~avr~~lR~~~~r~A~IliRleipp~----fi~rl~e~--------~~~~~f~~~lw~sfr~~yq 165 (444)
-..+......+. ++.. .....+++.|+-|+++..+ .|..|.|+ -+.+.++|+.+.||.++..
T Consensus 582 ~i~LsiDlse~a--lek~----~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~ 655 (791)
T KOG1002|consen 582 HIGLSIDLSEPA--LEKT----DLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIE 655 (791)
T ss_pred cccccccccchh--hhhc----chhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHH
Confidence 877765432222 1111 0111223445555555432 23334333 3478899999999999876
Q ss_pred hhcccCcceee
Q 013396 166 VSLILSGGFIL 176 (444)
Q Consensus 166 ~s~~~~g~f~~ 176 (444)
--+-- .+|.-
T Consensus 656 ~rL~k-aGfsc 665 (791)
T KOG1002|consen 656 WRLGK-AGFSC 665 (791)
T ss_pred HHhhc-cCceE
Confidence 53333 34443
No 43
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.35 E-value=9e-05 Score=78.21 Aligned_cols=50 Identities=30% Similarity=0.780 Sum_probs=36.8
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~ 102 (444)
.+-.+|+||||.+...-.- . +. ..|.|.||-.|+.+|+.. +||+||--..
T Consensus 173 tELPTCpVCLERMD~s~~g--i-----------~t-------------~~c~Hsfh~~cl~~w~~~--scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTG--I-----------LT-------------ILCNHSFHCSCLMKWWDS--SCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccc--e-----------ee-------------eecccccchHHHhhcccC--cChhhhhhcC
Confidence 3456899999998764211 1 11 169999999999999865 5999987543
No 44
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00011 Score=74.46 Aligned_cols=48 Identities=27% Similarity=0.568 Sum_probs=38.1
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC-CCCCCcccCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS-SQCPMCWQPISLK 104 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s-ssCP~CRq~i~~k 104 (444)
+..|.||+.... +||+| .|+|.||..||+.-+++. ..|++||++|...
T Consensus 7 ~~eC~IC~nt~n-----------------~Pv~l-------------~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGN-----------------CPVNL-------------YCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCC-----------------cCccc-------------cccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 568999998633 26777 899999999999866554 5699999998654
No 45
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=3.9e-05 Score=78.90 Aligned_cols=50 Identities=24% Similarity=0.652 Sum_probs=39.6
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc-CCCCCCcccCCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR-SSQCPMCWQPISLKD 105 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~-sssCP~CRq~i~~k~ 105 (444)
+..|+|||+.+..... ...|.|.||.+||.+-+.. ...||.||+.+.-+.
T Consensus 43 ~v~c~icl~llk~tmt-----------------------------tkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMT-----------------------------TKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhccHHHHHHHHhhcc-----------------------------cHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 5689999999886321 1169999999999988755 668999999887654
No 46
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.30 E-value=4.6e-05 Score=84.61 Aligned_cols=85 Identities=20% Similarity=0.239 Sum_probs=49.8
Q ss_pred CCCCCCCCcccccccCCCCCC-CCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCccc
Q 013396 21 GIQDACDDACSICLEPFSDSD-PSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQ 99 (444)
Q Consensus 21 ~iqd~~Dd~CsICLE~F~~~~-~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq 99 (444)
++.....+.|.||.-.|.... ....++.+-++.-++|.-|.. ...-++..--+|+|+||.+||..|.....+||+||.
T Consensus 90 DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s-~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~ 168 (1134)
T KOG0825|consen 90 DEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKS-CNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRG 168 (1134)
T ss_pred CcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHH-HHHHhhccccccccccHHHHhhhhhhhcccCchhhh
Confidence 444555677888877777622 111111111122222222210 011123344479999999999999999999999999
Q ss_pred CCCCCCC
Q 013396 100 PISLKDP 106 (444)
Q Consensus 100 ~i~~k~~ 106 (444)
.|.....
T Consensus 169 EF~~v~V 175 (1134)
T KOG0825|consen 169 EFGEVKV 175 (1134)
T ss_pred hhheeee
Confidence 9875543
No 47
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00022 Score=74.59 Aligned_cols=60 Identities=23% Similarity=0.609 Sum_probs=49.1
Q ss_pred chhhhcCCCCCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCC
Q 013396 14 PAAFVEGGIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQ 93 (444)
Q Consensus 14 ~~a~ve~~iqd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sss 93 (444)
+.++..+..+...+..|.||+..|.. ||.+ +|||.||..||.+-+.....
T Consensus 71 ~~~~~s~~~~~~sef~c~vc~~~l~~-----------------pv~t-------------pcghs~c~~Cl~r~ld~~~~ 120 (398)
T KOG4159|consen 71 PKALLSGPEEIRSEFECCVCSRALYP-----------------PVVT-------------PCGHSFCLECLDRSLDQETE 120 (398)
T ss_pred hhhhhccCccccchhhhhhhHhhcCC-----------------Cccc-------------cccccccHHHHHHHhccCCC
Confidence 34555566666788899999888765 6666 99999999999998888889
Q ss_pred CCCcccCCCC
Q 013396 94 CPMCWQPISL 103 (444)
Q Consensus 94 CP~CRq~i~~ 103 (444)
||.||..+..
T Consensus 121 cp~Cr~~l~e 130 (398)
T KOG4159|consen 121 CPLCRDELVE 130 (398)
T ss_pred Cccccccccc
Confidence 9999998865
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00013 Score=80.54 Aligned_cols=49 Identities=31% Similarity=0.649 Sum_probs=39.8
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc-CCCCCCcccCCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR-SSQCPMCWQPISLKD 105 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~-sssCP~CRq~i~~k~ 105 (444)
-..|+.|...+.+ .||+ .|+|.||..||..-+.. ...||.|-..|..-+
T Consensus 643 ~LkCs~Cn~R~Kd-----------------~vI~-------------kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD-----------------AVIT-------------KCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred ceeCCCccCchhh-----------------HHHH-------------hcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 4579999977666 3444 89999999999998865 568999999987655
No 49
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00014 Score=57.69 Aligned_cols=29 Identities=31% Similarity=0.751 Sum_probs=24.0
Q ss_pred CCCCh-hcHHHHHHHhc-cCCCCCCcccCCC
Q 013396 74 SCRHE-FHLQCVLEWCQ-RSSQCPMCWQPIS 102 (444)
Q Consensus 74 ~CgH~-FH~~CI~~Wlk-~sssCP~CRq~i~ 102 (444)
.|||+ .|..|-.+-++ .+.+||+||+++.
T Consensus 24 tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 24 TCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred HcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 59997 79999887555 6789999999864
No 50
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00066 Score=71.24 Aligned_cols=50 Identities=36% Similarity=0.961 Sum_probs=38.7
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc--CCCCCCcccC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR--SSQCPMCWQP 100 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~--sssCP~CRq~ 100 (444)
+-.+|+||++.+...-. +|-|+| .|||.|..+||.+|+-+ ...||.|...
T Consensus 3 ~g~tcpiclds~~~~g~------------hr~vsl-------------~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGN------------HRIVSL-------------QCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCc------------eEEeee-------------cccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 45689999999875321 356677 79999999999999953 2479999754
No 51
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.71 E-value=0.00063 Score=69.57 Aligned_cols=51 Identities=29% Similarity=0.664 Sum_probs=41.6
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDP 106 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~~ 106 (444)
-.+|.+|-..|.+.. ++. .|-|.||..||.+++.....||+|...+....+
T Consensus 15 ~itC~LC~GYliDAT--TI~---------------------------eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 15 HITCRLCGGYLIDAT--TIT---------------------------ECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHP 65 (331)
T ss_pred ceehhhccceeecch--hHH---------------------------HHHHHHHHHHHHHHHHHhccCCccceeccCccc
Confidence 358999999888732 222 799999999999999999999999988765543
No 52
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.70 E-value=0.0011 Score=51.98 Aligned_cols=41 Identities=39% Similarity=0.849 Sum_probs=28.4
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc--CCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR--SSQCPM 96 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~--sssCP~ 96 (444)
...|+|.+..|.+ ||.-+ .|||.|-+..|.+|+++ ...||+
T Consensus 11 ~~~CPiT~~~~~~-----------------PV~s~------------~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFED-----------------PVKSK------------KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SS-----------------EEEES------------SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhC-----------------CcCcC------------CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 5689999999887 66653 89999999999999944 347998
No 53
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.67 E-value=0.00078 Score=69.92 Aligned_cols=52 Identities=29% Similarity=0.692 Sum_probs=42.6
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLK 104 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k 104 (444)
.++..|+||+..+.+.-.. +.|||.||..||..|+..+..||.|++.+...
T Consensus 19 ~~~l~C~~C~~vl~~p~~~-----------------------------~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT-----------------------------TTCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccccCccccccccCCCCC-----------------------------CCCCCcccccccchhhccCcCCcccccccchh
Confidence 4578899999998873211 27999999999999999989999999887655
Q ss_pred C
Q 013396 105 D 105 (444)
Q Consensus 105 ~ 105 (444)
.
T Consensus 70 ~ 70 (391)
T KOG0297|consen 70 E 70 (391)
T ss_pred h
Confidence 4
No 54
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0016 Score=67.25 Aligned_cols=46 Identities=37% Similarity=0.837 Sum_probs=38.0
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCCh-hcHHHHHHHhccCCCCCCcccCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHE-FHLQCVLEWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~-FH~~CI~~Wlk~sssCP~CRq~i~ 102 (444)
-..|.|||..-.+ .|+| +|.|. .|..|-+...-....||+||+++.
T Consensus 290 gkeCVIClse~rd-----------------t~vL-------------PCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRD-----------------TVVL-------------PCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcc-----------------eEEe-------------cchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 4579999998666 5677 99997 799999887666778999999874
No 55
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.49 E-value=0.0014 Score=76.81 Aligned_cols=30 Identities=37% Similarity=0.814 Sum_probs=24.1
Q ss_pred CCCChhcHHHHHHHhccC----------CCCCCcccCCCC
Q 013396 74 SCRHEFHLQCVLEWCQRS----------SQCPMCWQPISL 103 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~s----------ssCP~CRq~i~~ 103 (444)
.|+|+||++|...-+++. -+||+|++++..
T Consensus 3506 ~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3506 DCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred CCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 699999999998766543 279999998753
No 56
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.43 E-value=0.00079 Score=68.53 Aligned_cols=52 Identities=33% Similarity=0.809 Sum_probs=40.4
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc----------------
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR---------------- 90 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~---------------- 90 (444)
...|.|||.-|.+++..+++ .|-|.||..|+.++|..
T Consensus 115 ~gqCvICLygfa~~~~ft~T---------------------------~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~ 167 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVT---------------------------ACDHYMHFACLARYLTECLTGLRQEIQDAQKER 167 (368)
T ss_pred CCceEEEEEeecCCCceeee---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999987765555 89999999999877632
Q ss_pred -------CCCCCCcccCCCCCC
Q 013396 91 -------SSQCPMCWQPISLKD 105 (444)
Q Consensus 91 -------sssCP~CRq~i~~k~ 105 (444)
...||+||..+....
T Consensus 168 qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 168 QHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred HHhhhhHhhhhhHhhhhccccc
Confidence 125999999886543
No 57
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0076 Score=59.68 Aligned_cols=69 Identities=30% Similarity=0.518 Sum_probs=50.2
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc--------CCCCCCc
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR--------SSQCPMC 97 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~--------sssCP~C 97 (444)
-+..|..|--.+..++.. .| -|-|.||..|+.+|-.. ..+||.|
T Consensus 49 Y~pNC~LC~t~La~gdt~---------------RL-------------vCyhlfHW~ClneraA~lPanTAPaGyqCP~C 100 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTT---------------RL-------------VCYHLFHWKCLNERAANLPANTAPAGYQCPCC 100 (299)
T ss_pred CCCCCceeCCccccCcce---------------ee-------------hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCC
Confidence 356799998888876532 33 59999999999999754 2389999
Q ss_pred ccCCCCCCCCccchHHHHHHHHHhc
Q 013396 98 WQPISLKDPTRFCVNFAARNYLRRS 122 (444)
Q Consensus 98 Rq~i~~k~~~~~~~~~avr~~lR~~ 122 (444)
-++|....-...++.++++..+...
T Consensus 101 s~eiFPp~NlvsPva~aLre~L~qv 125 (299)
T KOG3970|consen 101 SQEIFPPINLVSPVAEALREQLKQV 125 (299)
T ss_pred CCccCCCccccchhHHHHHHHHHhh
Confidence 9998766555556666666555543
No 58
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.11 E-value=0.0028 Score=61.63 Aligned_cols=45 Identities=24% Similarity=0.641 Sum_probs=38.3
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPI 101 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i 101 (444)
--.|.||-+.|.. ||+. .|||.||..|...-++....|-+|-...
T Consensus 196 PF~C~iCKkdy~s-----------------pvvt-------------~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYES-----------------PVVT-------------ECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccc-----------------hhhh-------------hcchhHHHHHHHHHhccCCcceecchhh
Confidence 3479999999887 5555 7999999999999999999999997653
No 59
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.002 Score=65.35 Aligned_cols=45 Identities=31% Similarity=0.574 Sum_probs=39.4
Q ss_pred CcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCC
Q 013396 28 DACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 28 d~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~ 102 (444)
..|-||.+.|.. ||+. .|+|.||..|-..-+++...|++|-+.+.
T Consensus 242 f~c~icr~~f~~-----------------pVvt-------------~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYR-----------------PVVT-------------KCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred cccccccccccc-----------------chhh-------------cCCceeehhhhccccccCCcceecccccc
Confidence 459999999887 6666 89999999999999999999999987654
No 60
>PHA03096 p28-like protein; Provisional
Probab=96.02 E-value=0.0032 Score=63.39 Aligned_cols=50 Identities=28% Similarity=0.494 Sum_probs=33.8
Q ss_pred CcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC---CCCCCccc
Q 013396 28 DACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS---SQCPMCWQ 99 (444)
Q Consensus 28 d~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s---ssCP~CRq 99 (444)
-.|.||||......... .+..+| +.|.|.||..||..|.... ..||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~----------~~fgil------------~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIK----------KYYGIL------------SEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhcccc----------cccccc------------ccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 57999999877532111 112334 4899999999999998653 25666654
No 61
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.72 E-value=0.0054 Score=64.70 Aligned_cols=32 Identities=25% Similarity=0.720 Sum_probs=27.0
Q ss_pred CCCChhcHHHHHHHhcc--CCCCCCcccCCCCCC
Q 013396 74 SCRHEFHLQCVLEWCQR--SSQCPMCWQPISLKD 105 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~--sssCP~CRq~i~~k~ 105 (444)
+|||..|..|+..|... .+.||.||..|.-..
T Consensus 386 PCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 386 PCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred cccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 89999999999999844 468999999885443
No 62
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.57 E-value=0.0047 Score=64.94 Aligned_cols=50 Identities=30% Similarity=0.675 Sum_probs=36.6
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC--CCCCCcccCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS--SQCPMCWQPI 101 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s--ssCP~CRq~i 101 (444)
-+..|..|-|.+..... +--.| +|.|+||..|+.+++.++ .+||.||...
T Consensus 364 ~~L~Cg~CGe~~Glk~e-------------~LqAL-------------pCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNE-------------RLQAL-------------PCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HhhhhhhhhhhhcCCcc-------------ccccc-------------chhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 35679999998765331 11122 799999999999999664 5899998543
No 63
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.013 Score=56.38 Aligned_cols=32 Identities=41% Similarity=1.014 Sum_probs=26.8
Q ss_pred CCCChhcHHHHHHHhcc---C--------CCCCCcccCCCCCC
Q 013396 74 SCRHEFHLQCVLEWCQR---S--------SQCPMCWQPISLKD 105 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~---s--------ssCP~CRq~i~~k~ 105 (444)
+||.-||.-|+..||.. + ..||.|-.++..|.
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 79999999999999954 1 26999999887664
No 64
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.12 E-value=0.02 Score=44.02 Aligned_cols=28 Identities=21% Similarity=0.638 Sum_probs=16.4
Q ss_pred CCCChhcHHHHHHHhc-cCCCCCCcccCC
Q 013396 74 SCRHEFHLQCVLEWCQ-RSSQCPMCWQPI 101 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk-~sssCP~CRq~i 101 (444)
+||+..|+.|...-++ ....||-||+++
T Consensus 19 ~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 19 ECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp TTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred cCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 6999999999988886 467899999876
No 65
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.02 E-value=0.019 Score=59.76 Aligned_cols=56 Identities=21% Similarity=0.549 Sum_probs=38.7
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc-CCCCCCcccCCC
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR-SSQCPMCWQPIS 102 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~-sssCP~CRq~i~ 102 (444)
+++|+.|+.|+|++...+.-... | +||...|.-|-..--+. +..||-||+.+.
T Consensus 11 edeed~cplcie~mditdknf~p--------------------c------~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFP--------------------C------PCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccccccCcccccccccccCCccc--------------------C------CcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 45577799999998875532211 1 79988777775543332 557999999987
Q ss_pred CCC
Q 013396 103 LKD 105 (444)
Q Consensus 103 ~k~ 105 (444)
..+
T Consensus 65 den 67 (480)
T COG5175 65 DEN 67 (480)
T ss_pred ccc
Confidence 655
No 66
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.82 E-value=0.036 Score=54.48 Aligned_cols=54 Identities=26% Similarity=0.546 Sum_probs=39.9
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLK 104 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k 104 (444)
.....|+|+...|... .++|+|+ +|||+|...||.+-- ....||+|-.+|...
T Consensus 111 ~~~~~CPvt~~~~~~~--------------~~fv~l~------------~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGK--------------HKFVYLR------------PCGCVFSEKALKELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCc--------------eeEEEEc------------CCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence 3455788888887542 2355554 899999999999983 456799999998744
Q ss_pred C
Q 013396 105 D 105 (444)
Q Consensus 105 ~ 105 (444)
+
T Consensus 164 D 164 (260)
T PF04641_consen 164 D 164 (260)
T ss_pred C
Confidence 3
No 67
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.025 Score=57.17 Aligned_cols=32 Identities=22% Similarity=0.570 Sum_probs=25.0
Q ss_pred ccCCCCChhcHHHHHHHhc--cCCCCCCcccCCC
Q 013396 71 QLTSCRHEFHLQCVLEWCQ--RSSQCPMCWQPIS 102 (444)
Q Consensus 71 ~l~~CgH~FH~~CI~~Wlk--~sssCP~CRq~i~ 102 (444)
++++|+|+||.-||..=+. .+-.||.|-....
T Consensus 254 ~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 254 VIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred eeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3448999999999998654 3568999977654
No 68
>PHA02862 5L protein; Provisional
Probab=94.68 E-value=0.025 Score=52.70 Aligned_cols=29 Identities=24% Similarity=0.705 Sum_probs=23.8
Q ss_pred ChhcHHHHHHHhccC--CCCCCcccCCCCCC
Q 013396 77 HEFHLQCVLEWCQRS--SQCPMCWQPISLKD 105 (444)
Q Consensus 77 H~FH~~CI~~Wlk~s--ssCP~CRq~i~~k~ 105 (444)
..-|..|+.+|++.+ ..|++|+.++..+.
T Consensus 26 K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 26 KVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred hhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 578999999999664 47999999886543
No 69
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.56 E-value=0.045 Score=56.25 Aligned_cols=53 Identities=21% Similarity=0.412 Sum_probs=37.8
Q ss_pred CcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHh-ccCCCCCCccc-CCCCCC
Q 013396 28 DACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWC-QRSSQCPMCWQ-PISLKD 105 (444)
Q Consensus 28 d~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wl-k~sssCP~CRq-~i~~k~ 105 (444)
+.|+.|...+...+. + +.|+|.||.+||..-| .....||.|-+ .+.+..
T Consensus 275 LkCplc~~Llrnp~k-----------------T------------~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~ 325 (427)
T COG5222 275 LKCPLCHCLLRNPMK-----------------T------------PCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDG 325 (427)
T ss_pred ccCcchhhhhhCccc-----------------C------------ccccchHHHHHHhhhhhhccccCCCcccccchhhc
Confidence 789999888776331 1 2699999999999766 45568999954 454444
Q ss_pred CCcc
Q 013396 106 PTRF 109 (444)
Q Consensus 106 ~~~~ 109 (444)
.++.
T Consensus 326 l~pD 329 (427)
T COG5222 326 LTPD 329 (427)
T ss_pred cCcc
Confidence 4444
No 70
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.39 E-value=0.013 Score=53.46 Aligned_cols=35 Identities=26% Similarity=0.609 Sum_probs=26.8
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCC------ChhcHHHHHHHh
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCR------HEFHLQCVLEWC 88 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~Cg------H~FH~~CI~~Wl 88 (444)
...|.||++.+.+.++ +|.+ .|| |+||..|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~G--------------vV~v-------------t~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDG--------------VVYV-------------TDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCC--------------EEEE-------------ecCCeehHHHHHHHHHHHHHH
Confidence 4579999999987333 3444 454 999999999994
No 71
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.03 Score=58.59 Aligned_cols=53 Identities=19% Similarity=0.458 Sum_probs=42.1
Q ss_pred CCCCCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCccc
Q 013396 20 GGIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQ 99 (444)
Q Consensus 20 ~~iqd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq 99 (444)
.+..+.+|+.|+||+..=. -.+..+|+|.-|..||.+-+.+.+.|=.|+.
T Consensus 415 ~~lp~sEd~lCpICyA~pi------------------------------~Avf~PC~H~SC~~CI~qHlmN~k~CFfCkt 464 (489)
T KOG4692|consen 415 KDLPDSEDNLCPICYAGPI------------------------------NAVFAPCSHRSCYGCITQHLMNCKRCFFCKT 464 (489)
T ss_pred CCCCCcccccCcceecccc------------------------------hhhccCCCCchHHHHHHHHHhcCCeeeEecc
Confidence 3456788999999985411 1234499999999999999999999999988
Q ss_pred CCC
Q 013396 100 PIS 102 (444)
Q Consensus 100 ~i~ 102 (444)
.+.
T Consensus 465 Tv~ 467 (489)
T KOG4692|consen 465 TVI 467 (489)
T ss_pred eee
Confidence 765
No 72
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.022 Score=59.17 Aligned_cols=45 Identities=33% Similarity=0.687 Sum_probs=32.7
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~ 102 (444)
+..+.|.||++...+ -+.+ +|||.-| |+..-... .+||+||+.+.
T Consensus 303 ~~p~lcVVcl~e~~~-----------------~~fv-------------pcGh~cc--ct~cs~~l-~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS-----------------AVFV-------------PCGHVCC--CTLCSKHL-PQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccc-----------------eeee-------------cCCcEEE--chHHHhhC-CCCchhHHHHH
Confidence 446789999998776 2334 8999977 77654433 35999999764
No 73
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.13 E-value=0.049 Score=51.26 Aligned_cols=31 Identities=32% Similarity=0.898 Sum_probs=24.2
Q ss_pred CCCC---hhcHHHHHHHhccC--CCCCCcccCCCCC
Q 013396 74 SCRH---EFHLQCVLEWCQRS--SQCPMCWQPISLK 104 (444)
Q Consensus 74 ~CgH---~FH~~CI~~Wlk~s--ssCP~CRq~i~~k 104 (444)
.|.. .-|..|+.+|+..+ ..|++|.+++..+
T Consensus 26 ~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 26 NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 4555 56999999999664 4799999987654
No 74
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.13 E-value=0.042 Score=64.58 Aligned_cols=55 Identities=25% Similarity=0.401 Sum_probs=35.5
Q ss_pred CCCChhcHHHHHHHhccCCCCCCcccCCCCCCCCccchHHHHHHHHHhcccCCCee
Q 013396 74 SCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDPTRFCVNFAARNYLRRSNKRGALV 129 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~~~~~~~~~avr~~lR~~~~r~A~I 129 (444)
.|||.||..|+..|+..+..||+|+.....-...-..+... ..+++-.+...+.|
T Consensus 1171 ~cgh~~c~~c~~~~l~~~s~~~~~ksi~~dfg~kI~~v~~~-il~iK~k~~qekvI 1225 (1394)
T KOG0298|consen 1171 GCGHEPCCRCDELWLYASSRCPICKSIKGDFGTKIDSVVIA-ILYIKFKNEQEKVI 1225 (1394)
T ss_pred eechhHhhhHHHHHHHHhccCcchhhhhhhhccCchhHHHH-HHHHhccCcCceEE
Confidence 69999999999999999999999985433222111111111 25555555555544
No 75
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=0.044 Score=54.99 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=38.5
Q ss_pred ceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCCCC
Q 013396 53 RFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDP 106 (444)
Q Consensus 53 ~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~~ 106 (444)
||.|||.-..+.|.--.+++.+|||.|+++|..+.+.....||+|-.++...+.
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence 444444433333322234555999999999999999999999999988876653
No 76
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.05 Score=53.47 Aligned_cols=53 Identities=26% Similarity=0.631 Sum_probs=40.0
Q ss_pred CcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC-CCCCCcccCCCCC
Q 013396 28 DACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS-SQCPMCWQPISLK 104 (444)
Q Consensus 28 d~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s-ssCP~CRq~i~~k 104 (444)
..|-||-++|...++... |-+| .|||.||..|+.+-+... ..||.||......
T Consensus 4 ~~c~~c~~~~s~~~~~~~-----------p~~l-------------~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~ 57 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHI-----------PRVL-------------KCGHTICQNCASKLLGNSRILCPFCRETTEIP 57 (296)
T ss_pred CceeecCccccccCcccC-----------Cccc-------------ccCceehHhHHHHHhcCceeeccCCCCcccCC
Confidence 479999999998643321 2333 699999999998888665 4799999996433
No 77
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.99 E-value=0.052 Score=56.74 Aligned_cols=69 Identities=20% Similarity=0.408 Sum_probs=46.9
Q ss_pred cchhhhhcCchhhhcCC--CCCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHH
Q 013396 5 KQCDARLTSPAAFVEGG--IQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQ 82 (444)
Q Consensus 5 ~~~~~~l~S~~a~ve~~--iqd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~ 82 (444)
||.+..|..-+.++... .+|.++..|-||-+.+.-.+ ++ +|+|..|.-
T Consensus 37 kqkKNnlsaEPnlttsSaddtDEen~~C~ICA~~~TYs~-----------------~~-------------PC~H~~CH~ 86 (493)
T COG5236 37 KQKKNNLSAEPNLTTSSADDTDEENMNCQICAGSTTYSA-----------------RY-------------PCGHQICHA 86 (493)
T ss_pred hccccccccCCccccccccccccccceeEEecCCceEEE-----------------ec-------------cCCchHHHH
Confidence 34445555555555443 34566677999988765421 22 899999999
Q ss_pred HHHHH--hccCCCCCCcccCCCC
Q 013396 83 CVLEW--CQRSSQCPMCWQPISL 103 (444)
Q Consensus 83 CI~~W--lk~sssCP~CRq~i~~ 103 (444)
|-.+. |-....||+||..+..
T Consensus 87 Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 87 CAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred HHHHHHHHHhccCCCccccccce
Confidence 98763 4556789999998753
No 78
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.83 E-value=0.026 Score=46.59 Aligned_cols=33 Identities=30% Similarity=0.775 Sum_probs=24.7
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHH
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVL 85 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~ 85 (444)
..+..|+||-..|..+. +++. ||||.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~---------------f~~~-------------p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSV---------------FVVF-------------PCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCce---------------EEEe-------------CCCeEEeccccc
Confidence 44678999999987621 2233 899999999974
No 79
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.57 E-value=0.025 Score=64.04 Aligned_cols=23 Identities=30% Similarity=1.012 Sum_probs=20.2
Q ss_pred CCCChhcHHHHHHHhccCCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQRSSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssCP~CRq 99 (444)
.|||.||.+|+. .+...||.|+.
T Consensus 858 ~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 858 LCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred ecccHHHHHhhc---cCcccCCccch
Confidence 699999999998 55678999977
No 80
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=0.064 Score=56.83 Aligned_cols=45 Identities=24% Similarity=0.513 Sum_probs=33.7
Q ss_pred cccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc--------CCCCCCcccC
Q 013396 29 ACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR--------SSQCPMCWQP 100 (444)
Q Consensus 29 ~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~--------sssCP~CRq~ 100 (444)
.|.||++...... +.+.| +|+|.||+.|+..++.. ...||-|...
T Consensus 186 ~C~ICf~e~~G~~--------------c~~~l-------------pC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 186 DCCICFEEQMGQH--------------CFKFL-------------PCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cceeeehhhcCcc--------------eeeec-------------ccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 6999999977632 23444 89999999999999843 1268877654
No 81
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.021 Score=58.32 Aligned_cols=41 Identities=34% Similarity=0.761 Sum_probs=30.3
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCCh-hcHHHHHHHhccCCCCCCcccCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHE-FHLQCVLEWCQRSSQCPMCWQPI 101 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~-FH~~CI~~Wlk~sssCP~CRq~i 101 (444)
+..|.|||+.-.+ | |.| +|||. -|.+|-... ..||+||+.+
T Consensus 300 ~~LC~ICmDaP~D-------------C----vfL-------------eCGHmVtCt~CGkrm----~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRD-------------C----VFL-------------ECGHMVTCTKCGKRM----NECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcc-------------e----EEe-------------ecCcEEeehhhcccc----ccCchHHHHH
Confidence 6789999997444 2 344 89997 588886544 3899999865
No 82
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.04 E-value=0.12 Score=53.83 Aligned_cols=32 Identities=28% Similarity=0.790 Sum_probs=24.1
Q ss_pred CCCChhcHHHHHHHhccC-------------CCCCCcccCCCCCC
Q 013396 74 SCRHEFHLQCVLEWCQRS-------------SQCPMCWQPISLKD 105 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~s-------------ssCP~CRq~i~~k~ 105 (444)
-|.=+.|..|+-+|+... -.||+||+.|..-+
T Consensus 310 ~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 310 YCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred cccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 355677999999998331 27999999987544
No 83
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=91.90 E-value=0.078 Score=60.27 Aligned_cols=48 Identities=35% Similarity=0.815 Sum_probs=35.8
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC-------CCCCCcc
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS-------SQCPMCW 98 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s-------ssCP~CR 98 (444)
.-..|.||++.+....+.--. ..|=|+||+.||.+|.... -.||.|.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC--------------------------~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSC--------------------------KSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred CceEEEEeeeeccccCCceec--------------------------chhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 456899999999876543211 1588999999999998542 2699997
Q ss_pred c
Q 013396 99 Q 99 (444)
Q Consensus 99 q 99 (444)
.
T Consensus 244 s 244 (950)
T KOG1952|consen 244 S 244 (950)
T ss_pred c
Confidence 3
No 84
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.85 E-value=0.041 Score=54.35 Aligned_cols=32 Identities=34% Similarity=0.777 Sum_probs=24.0
Q ss_pred cCCCCChhcHHHHHHHhccCCCCCCcccCCCCCC
Q 013396 72 LTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKD 105 (444)
Q Consensus 72 l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~ 105 (444)
|+.|+|+||..|...-.. ..||+|++.+....
T Consensus 20 LTaC~HvfC~~C~k~~~~--~~C~lCkk~ir~i~ 51 (233)
T KOG4739|consen 20 LTACRHVFCEPCLKASSP--DVCPLCKKSIRIIQ 51 (233)
T ss_pred eeechhhhhhhhcccCCc--cccccccceeeeee
Confidence 348999999999754322 28999999876544
No 85
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.15 Score=52.82 Aligned_cols=53 Identities=19% Similarity=0.488 Sum_probs=39.4
Q ss_pred cCCCCCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcc
Q 013396 19 EGGIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCW 98 (444)
Q Consensus 19 e~~iqd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CR 98 (444)
|+.+.......|+||+.....++ ++. --|-.||..||..++.+...||+=-
T Consensus 292 e~e~l~~~~~~CpvClk~r~Npt---------------vl~--------------vSGyVfCY~Ci~~Yv~~~~~CPVT~ 342 (357)
T KOG0826|consen 292 ESELLPPDREVCPVCLKKRQNPT---------------VLE--------------VSGYVFCYPCIFSYVVNYGHCPVTG 342 (357)
T ss_pred ccccCCCccccChhHHhccCCCc---------------eEE--------------ecceEEeHHHHHHHHHhcCCCCccC
Confidence 33445566788999998866532 111 3589999999999999999999865
Q ss_pred cC
Q 013396 99 QP 100 (444)
Q Consensus 99 q~ 100 (444)
.+
T Consensus 343 ~p 344 (357)
T KOG0826|consen 343 YP 344 (357)
T ss_pred Cc
Confidence 44
No 86
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.34 E-value=0.11 Score=58.08 Aligned_cols=32 Identities=31% Similarity=0.812 Sum_probs=25.8
Q ss_pred CCCChhcHHHHHHHhccC--CCCCCcccCCCCCC
Q 013396 74 SCRHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 105 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~s--ssCP~CRq~i~~k~ 105 (444)
.|+|.||..|+.+-+... ..||+||..+..+.
T Consensus 470 ~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 470 RCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 799999999999987553 36999998765443
No 87
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=90.91 E-value=0.12 Score=38.86 Aligned_cols=20 Identities=25% Similarity=0.908 Sum_probs=15.4
Q ss_pred hhcHHHHHHHhcc--CCCCCCc
Q 013396 78 EFHLQCVLEWCQR--SSQCPMC 97 (444)
Q Consensus 78 ~FH~~CI~~Wlk~--sssCP~C 97 (444)
..|..||.+|+.. ...|++|
T Consensus 26 ~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 26 YVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp SEECCHHHHHHHHHT-SB-TTT
T ss_pred hhHHHHHHHHHHhcCCCcCCCC
Confidence 7899999999964 4579987
No 88
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=89.67 E-value=0.22 Score=50.36 Aligned_cols=48 Identities=29% Similarity=0.553 Sum_probs=37.5
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCccc
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQ 99 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq 99 (444)
.+..|+||.+.+....+. |..+ +|||.-|..|+.+.....-.||+|..
T Consensus 157 ~~~ncPic~e~l~~s~~~-------------~~~~-------------~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFED-------------AGVL-------------KCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhcccccc-------------CCcc-------------CcccchHHHHHHHHhccCCCCCcccc
Confidence 345599999987765422 2333 89999999999999877799999977
No 89
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.81 E-value=0.35 Score=55.21 Aligned_cols=54 Identities=30% Similarity=0.732 Sum_probs=38.8
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCC-----ChhcHHHHHHHhccC--CCCCC
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCR-----HEFHLQCVLEWCQRS--SQCPM 96 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~Cg-----H~FH~~CI~~Wlk~s--ssCP~ 96 (444)
.+++..|-||...=..++|.. | ||+ -..|.+|+.+|+.-+ ..|-+
T Consensus 9 N~d~~~CRICr~e~~~d~pLf------h----------------------PCKC~GSIkYiH~eCL~eW~~~s~~~kCdi 60 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLF------H----------------------PCKCSGSIKYIHRECLMEWMECSGTKKCDI 60 (1175)
T ss_pred CccchhceeecCCCCCCCcCc------c----------------------cccccchhHHHHHHHHHHHHhcCCCcceee
Confidence 345688999998755544432 1 455 358999999999754 46999
Q ss_pred cccCCCCCC
Q 013396 97 CWQPISLKD 105 (444)
Q Consensus 97 CRq~i~~k~ 105 (444)
|..++..|+
T Consensus 61 Chy~~~Fk~ 69 (1175)
T COG5183 61 CHYEYKFKD 69 (1175)
T ss_pred ecceeeeee
Confidence 998876554
No 90
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.73 E-value=0.26 Score=36.63 Aligned_cols=24 Identities=29% Similarity=0.883 Sum_probs=15.9
Q ss_pred CCCChhcHHHHHHHhccCC--CCCCc
Q 013396 74 SCRHEFHLQCVLEWCQRSS--QCPMC 97 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~ss--sCP~C 97 (444)
.|+=.+|..|+..++.... .||.|
T Consensus 18 ~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 18 DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 5888999999999997754 69988
No 91
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.79 E-value=0.34 Score=54.96 Aligned_cols=40 Identities=28% Similarity=0.614 Sum_probs=31.5
Q ss_pred cceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCC
Q 013396 52 VRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPM 96 (444)
Q Consensus 52 ~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~ 96 (444)
.|.+|=+.+++...+| +.|+|.-|..|..+|+.....||.
T Consensus 1030 ~C~~C~l~V~gss~~C-----g~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVRGSSNFC-----GTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeEeeEeeccchhh-----ccccccccHHHHHHHHhcCCcCCC
Confidence 3566666666555554 469999999999999999989985
No 92
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.29 E-value=0.29 Score=56.01 Aligned_cols=37 Identities=27% Similarity=0.664 Sum_probs=27.1
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHh
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWC 88 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wl 88 (444)
-.-++.|.||.-.|... + +++. +|||.||..||.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~~-p--------------F~vf-------------~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-P--------------FYVF-------------PCGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcC-c--------------ceee-------------eccchHHHHHHHHHH
Confidence 34567999999887752 1 1222 899999999998754
No 93
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=84.83 E-value=0.33 Score=37.80 Aligned_cols=30 Identities=33% Similarity=0.844 Sum_probs=22.4
Q ss_pred CCC-ChhcHHHHHHHhccCCCCCCcccCCCC
Q 013396 74 SCR-HEFHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 74 ~Cg-H~FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
.|. |..|+.|+...+..+..||+|+.++..
T Consensus 17 ~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 17 KCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp E-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred eecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 575 999999999999999999999988754
No 94
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.09 E-value=0.069 Score=56.39 Aligned_cols=32 Identities=19% Similarity=0.526 Sum_probs=28.2
Q ss_pred CCCChhcHHHHHHHhccCCCCCCcccCCCCCC
Q 013396 74 SCRHEFHLQCVLEWCQRSSQCPMCWQPISLKD 105 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~ 105 (444)
.|||.+|..||.+|+.....||.|+..+....
T Consensus 217 ~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 217 VCGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred hhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 59999999999999998889999999876443
No 95
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.78 E-value=0.41 Score=53.68 Aligned_cols=49 Identities=29% Similarity=0.607 Sum_probs=37.3
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHh--c-cCCCCCCcccCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWC--Q-RSSQCPMCWQPISL 103 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wl--k-~sssCP~CRq~i~~ 103 (444)
+..|+||+..+.+ |+.+ .|.|.||.-|+..-+ + ....||+|+..+..
T Consensus 21 ~lEc~ic~~~~~~-----------------p~~~-------------kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKE-----------------PSLL-------------KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeec-----------------cchh-------------hhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 6689999998776 4445 899999999998633 3 36689999976654
Q ss_pred CC
Q 013396 104 KD 105 (444)
Q Consensus 104 k~ 105 (444)
..
T Consensus 71 ~s 72 (684)
T KOG4362|consen 71 RS 72 (684)
T ss_pred hh
Confidence 43
No 96
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.61 E-value=0.6 Score=52.26 Aligned_cols=43 Identities=30% Similarity=0.547 Sum_probs=33.2
Q ss_pred CcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCccc
Q 013396 28 DACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQ 99 (444)
Q Consensus 28 d~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq 99 (444)
..|.||+..|... -++||.| .|||..|.+|+..-+.. +|| |+.
T Consensus 12 l~c~ic~n~f~~~-------------~~~Pvsl-------------~cghtic~~c~~~lyn~--scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQ-------------RLEPVSL-------------QCGHTICGHCVQLLYNA--SCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHH-------------hcCcccc-------------cccchHHHHHHHhHhhc--cCC-CCc
Confidence 5799998887653 2458888 89999999999887755 577 543
No 97
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.90 E-value=0.67 Score=47.79 Aligned_cols=32 Identities=28% Similarity=0.681 Sum_probs=25.1
Q ss_pred CCCChhcHHHHHHHhcc-------------CCCCCCcccCCCCCC
Q 013396 74 SCRHEFHLQCVLEWCQR-------------SSQCPMCWQPISLKD 105 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~-------------sssCP~CRq~i~~k~ 105 (444)
-|.-..|..|+-+|+-. +-+||+||+.+...+
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 47788999999999843 238999999886544
No 98
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.66 E-value=1.2 Score=45.10 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=28.2
Q ss_pred ChhcHHHHHHHhccC--------CCCCCcccCCCCCCCCccchHHHH
Q 013396 77 HEFHLQCVLEWCQRS--------SQCPMCWQPISLKDPTRFCVNFAA 115 (444)
Q Consensus 77 H~FH~~CI~~Wlk~s--------ssCP~CRq~i~~k~~~~~~~~~av 115 (444)
|.-|..||..|+... -.||.|++.+...-+.......++
T Consensus 49 KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~~~~~~L 95 (293)
T KOG3053|consen 49 KWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLGPFDRVL 95 (293)
T ss_pred HHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccChHHHHH
Confidence 899999999999442 169999998876655544444443
No 99
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.02 E-value=0.72 Score=48.29 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=15.4
Q ss_pred CCCChhcHHHHHHHhcc
Q 013396 74 SCRHEFHLQCVLEWCQR 90 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~ 90 (444)
.|+|.||.+|+.+.++.
T Consensus 167 ~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 167 KCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccchhhhHHhHHHhhh
Confidence 69999999999998864
No 100
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=80.32 E-value=1.2 Score=43.18 Aligned_cols=28 Identities=18% Similarity=0.434 Sum_probs=22.5
Q ss_pred ChhcHHHHHHHhc--cCCCCCCcccCCCCC
Q 013396 77 HEFHLQCVLEWCQ--RSSQCPMCWQPISLK 104 (444)
Q Consensus 77 H~FH~~CI~~Wlk--~sssCP~CRq~i~~k 104 (444)
+..|..|+..|+. ....|.+|+..+...
T Consensus 107 ~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 107 AYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred HHHHHHHHHhhhccccCeeeecccccceec
Confidence 6679999999997 456899998866543
No 101
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=80.20 E-value=0.89 Score=47.22 Aligned_cols=29 Identities=28% Similarity=0.851 Sum_probs=21.1
Q ss_pred ccCCCCChhcHHHHHHHhccCCCCCCcccCC
Q 013396 71 QLTSCRHEFHLQCVLEWCQRSSQCPMCWQPI 101 (444)
Q Consensus 71 ~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i 101 (444)
.+-+|+|.||++|... ...+.||.|-..+
T Consensus 105 RmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 105 RMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred cccccchhhhhhhhhc--CccccCcCcccHH
Confidence 4557999999999643 3355899995543
No 102
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.52 E-value=1.1 Score=45.38 Aligned_cols=32 Identities=34% Similarity=0.525 Sum_probs=27.8
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHh
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWC 88 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wl 88 (444)
-+.|+.||.++.+ ||+. +=||.|+++||++++
T Consensus 43 FdcCsLtLqPc~d-----------------Pvit-------------~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 43 FDCCSLTLQPCRD-----------------PVIT-------------PDGYLFDREAILEYI 74 (303)
T ss_pred cceeeeecccccC-----------------CccC-------------CCCeeeeHHHHHHHH
Confidence 5789999999877 6666 889999999999976
No 103
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=78.60 E-value=2.8 Score=39.78 Aligned_cols=11 Identities=45% Similarity=0.972 Sum_probs=9.2
Q ss_pred CCCcccccccC
Q 013396 26 CDDACSICLEP 36 (444)
Q Consensus 26 ~Dd~CsICLE~ 36 (444)
+|..|+||||.
T Consensus 1 ed~~CpICme~ 11 (162)
T PF07800_consen 1 EDVTCPICMEH 11 (162)
T ss_pred CCccCceeccC
Confidence 36789999996
No 104
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=78.49 E-value=1.7 Score=49.93 Aligned_cols=28 Identities=7% Similarity=0.147 Sum_probs=22.0
Q ss_pred CCCChhcHHHHHHHhcc------CCCCCCcccCC
Q 013396 74 SCRHEFHLQCVLEWCQR------SSQCPMCWQPI 101 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~------sssCP~CRq~i 101 (444)
.|+|.||..||..|..+ .-.|+.|..-|
T Consensus 120 ~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 120 THVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred hhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 49999999999999865 23578886544
No 105
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=77.98 E-value=1.2 Score=48.24 Aligned_cols=34 Identities=21% Similarity=0.527 Sum_probs=29.3
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhc
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQ 89 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk 89 (444)
++..|+||...|.+ |+|| +|+|..|.-|...-+.
T Consensus 3 eelkc~vc~~f~~e-----------------piil-------------~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE-----------------PIIL-------------PCSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhccC-----------------ceEe-------------ecccHHHHHHHHhhcc
Confidence 57789999998887 8899 8999999999986553
No 106
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=76.28 E-value=2.2 Score=43.84 Aligned_cols=34 Identities=24% Similarity=0.522 Sum_probs=26.9
Q ss_pred ccCCCCChhcHHHHHHHhcc-CCCCCCcccCCCCC
Q 013396 71 QLTSCRHEFHLQCVLEWCQR-SSQCPMCWQPISLK 104 (444)
Q Consensus 71 ~l~~CgH~FH~~CI~~Wlk~-sssCP~CRq~i~~k 104 (444)
+..+|+|..|..|+..-+.. ...||.|-..+...
T Consensus 19 ~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 19 MINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred eeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 44489999999999998755 56999997765433
No 107
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=75.11 E-value=2 Score=43.95 Aligned_cols=43 Identities=30% Similarity=0.675 Sum_probs=32.8
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCC--CChhcHHHHHHHhccCCCCCCcccCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSC--RHEFHLQCVLEWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~C--gH~FH~~CI~~Wlk~sssCP~CRq~i~ 102 (444)
+-..|+||.+.+...- . +| ||.-|..|-. +....||.||.++.
T Consensus 47 ~lleCPvC~~~l~~Pi------------------~-------------QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPI------------------F-------------QCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCcccc------------------e-------------ecCCCcEehhhhhh---hhcccCCccccccc
Confidence 3467999999987631 1 46 6899888865 45667999999987
No 108
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.11 E-value=1.8 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.3
Q ss_pred CCCChhcHHHHHHHhccCCCCCC
Q 013396 74 SCRHEFHLQCVLEWCQRSSQCPM 96 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssCP~ 96 (444)
.|+|.-|..|+.+|+....-||.
T Consensus 798 ~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 798 VCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cccccccHHHHHHHHhcCCCCcc
Confidence 69999999999999999888877
No 109
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.67 E-value=1.4 Score=50.26 Aligned_cols=51 Identities=29% Similarity=0.642 Sum_probs=35.3
Q ss_pred CCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCc
Q 013396 23 QDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMC 97 (444)
Q Consensus 23 qd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~C 97 (444)
.-..+..|.-|.+....... + ++.+|++ .|+|+||..|+.--..++. |-.|
T Consensus 780 ~v~~e~rc~~c~~~~l~~~~--------~--~~~~~v~-------------~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 780 LVSVEERCSSCFEPNLPSGA--------A--FDSVVVF-------------HCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred eEeehhhhhhhcccccccCc--------c--cceeeEE-------------EccchhhhcccccHHHhcc-cChh
Confidence 33446689999998664321 1 4567777 8999999999987654443 6555
No 110
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=71.84 E-value=4.7 Score=30.81 Aligned_cols=26 Identities=27% Similarity=0.793 Sum_probs=9.2
Q ss_pred CCCChhcHHHHHHHhc---c--CCCCCCcccC
Q 013396 74 SCRHEFHLQCVLEWCQ---R--SSQCPMCWQP 100 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk---~--sssCP~CRq~ 100 (444)
.|.|.-|.+ +..|++ + .-.||+|.++
T Consensus 20 ~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 20 NCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp T--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred cCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 799985433 223442 2 2379999764
No 111
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=71.50 E-value=1.9 Score=34.30 Aligned_cols=30 Identities=30% Similarity=0.685 Sum_probs=23.1
Q ss_pred CCCChhcHHHHHHHhccCCCCCCcccCCCCCC
Q 013396 74 SCRHEFHLQCVLEWCQRSSQCPMCWQPISLKD 105 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~ 105 (444)
+|+|..|..|..-+ +-+-||.|-+++...+
T Consensus 24 pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 24 PCGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred cccceeeccccChh--hccCCCCCCCcccCCC
Confidence 89999999996543 3457999998886543
No 112
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=70.47 E-value=2.3 Score=42.20 Aligned_cols=28 Identities=32% Similarity=0.771 Sum_probs=24.9
Q ss_pred CCCChhcHHHHHHHhccCCCCCCcccCC
Q 013396 74 SCRHEFHLQCVLEWCQRSSQCPMCWQPI 101 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssCP~CRq~i 101 (444)
.|+-.||..|+..+++....||.|.--|
T Consensus 199 ~c~i~~h~~c~qty~q~~~~cphc~d~w 226 (235)
T KOG4718|consen 199 SCNIQYHRGCIQTYLQRRDICPHCGDLW 226 (235)
T ss_pred cccchhhhHHHHHHhcccCcCCchhccc
Confidence 6899999999999999999999995544
No 113
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=69.18 E-value=4.5 Score=37.54 Aligned_cols=31 Identities=16% Similarity=0.399 Sum_probs=25.2
Q ss_pred CCCChhcHHHHHHHhcc---CCCCCCcccCCCCC
Q 013396 74 SCRHEFHLQCVLEWCQR---SSQCPMCWQPISLK 104 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~---sssCP~CRq~i~~k 104 (444)
-||-..|.-|-...|+. ...||+|+..+...
T Consensus 101 CCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 101 CCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 59999999999886655 45899999988643
No 114
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.81 E-value=9.3 Score=38.98 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=24.9
Q ss_pred CCCChhcHHHHHHHhccCCCCCCcccCCCCCC
Q 013396 74 SCRHEFHLQCVLEWCQRSSQCPMCWQPISLKD 105 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~ 105 (444)
+|||.|-..-+.+.- ...|++|-+.+...+
T Consensus 132 ~CGcV~SerAlKeik--as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 132 CCGCVFSERALKEIK--ASVCHVCGAAYQEDD 161 (293)
T ss_pred ccceeccHHHHHHhh--hccccccCCcccccC
Confidence 899999998887753 668999999887665
No 115
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.14 E-value=5.9 Score=42.19 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=34.7
Q ss_pred cccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC---CCCCCcccC
Q 013396 50 FHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS---SQCPMCWQP 100 (444)
Q Consensus 50 ~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s---ssCP~CRq~ 100 (444)
||.-|-|||.- ..+..+-+++.-.|||+.+++-|.+..++. ..||.|-..
T Consensus 331 fHSvF~CPVlK-eqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 331 FHSVFICPVLK-EQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ccceeecccch-hhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 56666666654 333333455555799999999999998764 369999544
No 116
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.18 E-value=6.9 Score=41.47 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=29.3
Q ss_pred CCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc
Q 013396 23 QDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR 90 (444)
Q Consensus 23 qd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~ 90 (444)
.+..+..|.||.+.+.. .. ....|+|.||..|...++.+
T Consensus 66 ~~~~~~~c~ic~~~~~~--~~---------------------------~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 66 KKKGDVQCGICVESYDG--EI---------------------------IGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCCccccCCcccCCCcc--hh---------------------------hhcCCCcHHHHHHHHHHhhh
Confidence 34567789999998765 11 11279999999999999865
No 117
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=59.96 E-value=4 Score=41.36 Aligned_cols=31 Identities=29% Similarity=0.558 Sum_probs=24.6
Q ss_pred ccCCCCChhcHHHHHHHhcc-CCCCC--CcccCC
Q 013396 71 QLTSCRHEFHLQCVLEWCQR-SSQCP--MCWQPI 101 (444)
Q Consensus 71 ~l~~CgH~FH~~CI~~Wlk~-sssCP--~CRq~i 101 (444)
..+.|-|..|..|+.+-+.. ..+|| -|-+.+
T Consensus 30 inPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 30 INPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred ECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 34469999999999998876 45899 886544
No 118
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.39 E-value=4.4 Score=41.91 Aligned_cols=42 Identities=24% Similarity=0.570 Sum_probs=31.3
Q ss_pred CCCCCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCC----CChhcHHHHHHHhccC
Q 013396 20 GGIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSC----RHEFHLQCVLEWCQRS 91 (444)
Q Consensus 20 ~~iqd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~C----gH~FH~~CI~~Wlk~s 91 (444)
.++....-+.|.+|.|.+.+..-+ +| .|.||+-|-.+-++..
T Consensus 261 s~~A~~apLcCTLC~ERLEDTHFV------------------------------QCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 261 SGAAPSAPLCCTLCHERLEDTHFV------------------------------QCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred cccCCCCceeehhhhhhhccCcee------------------------------ecCCCcccceecccCHHHHHhh
Confidence 344455568999999999885411 45 5999999999988764
No 119
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=51.29 E-value=13 Score=38.89 Aligned_cols=49 Identities=24% Similarity=0.621 Sum_probs=37.1
Q ss_pred CcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCC
Q 013396 28 DACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 28 d~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~ 102 (444)
..|+||.+.....+-...+ -+|+|.-|+.|+..-...+..||.||.++.
T Consensus 250 ~s~p~~~~~~~~~d~~~lP--------------------------~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLP--------------------------CPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCccccccccccc--------------------------ccccccchhhhhhcccccCCCCCccCCccc
Confidence 6899999987544322111 168999999999888888899999997654
No 120
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=50.76 E-value=15 Score=29.26 Aligned_cols=33 Identities=27% Similarity=0.626 Sum_probs=24.7
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHH
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVL 85 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~ 85 (444)
...|.+|-+.|.+++...+. +.||-.||+.|-.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvC--------------------------p~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVC--------------------------PECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEEC--------------------------CCCCCcccHHHHh
Confidence 45799999999865543333 2799999999953
No 121
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.78 E-value=7 Score=41.09 Aligned_cols=26 Identities=27% Similarity=0.802 Sum_probs=21.7
Q ss_pred CCCChhcHHHHHHHhccCCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQRSSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssCP~CRq 99 (444)
.|||.||..|...|......|..|-.
T Consensus 328 rC~~~fcy~C~~~~~~~~~~~~~~~r 353 (384)
T KOG1812|consen 328 RCGHQFCYMCGGDWKTHNGECYECCR 353 (384)
T ss_pred eccccchhhcCcchhhCCccccCccc
Confidence 59999999999999988877766633
No 122
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=47.52 E-value=11 Score=38.62 Aligned_cols=51 Identities=25% Similarity=0.476 Sum_probs=34.0
Q ss_pred CcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc---------CCCCCCcc
Q 013396 28 DACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR---------SSQCPMCW 98 (444)
Q Consensus 28 d~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~---------sssCP~CR 98 (444)
..|-||.+.+.+.+..... + .-+.|+-.+|..|+-..+.. ...||.|+
T Consensus 183 ~~celc~~ei~e~~~~~a~-----------------c------~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~ 239 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRAT-----------------C------PNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCE 239 (276)
T ss_pred hhhHHHHHHhccccceecc-----------------C------CCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchh
Confidence 4799999998654322111 1 11259999999999985432 23799998
Q ss_pred cCC
Q 013396 99 QPI 101 (444)
Q Consensus 99 q~i 101 (444)
+.+
T Consensus 240 ~~~ 242 (276)
T KOG3005|consen 240 KFL 242 (276)
T ss_pred cee
Confidence 854
No 123
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=47.11 E-value=12 Score=30.38 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=20.6
Q ss_pred hhhhhhhcchhhHHHHhhhhhcccC
Q 013396 370 SEVRREDDAGIERVSGMMERLETRD 394 (444)
Q Consensus 370 ~~~~re~~agi~~v~~m~e~l~~~~ 394 (444)
|-+||.+.-|-.+.+|+||+||..+
T Consensus 24 S~lQR~~rIGynrAariid~LE~~G 48 (65)
T PF09397_consen 24 SLLQRKFRIGYNRAARIIDQLEEEG 48 (65)
T ss_dssp HHHHHHHT--HHHHHHHHHHHHHCT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 5679999999999999999999765
No 124
>PLN02189 cellulose synthase
Probab=45.56 E-value=17 Score=43.01 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=35.7
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHH-HhccCCCCCCcccCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLE-WCQRSSQCPMCWQPIS 102 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~-Wlk~sssCP~CRq~i~ 102 (444)
....|.||-|.+..+.. ++ -+|.. ..|+---|.-|..- .-+.++.||.|++.+.
T Consensus 33 ~~~~C~iCgd~vg~~~~-----g~------~fvaC------------~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVD-----GD------LFVAC------------NECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCC-----CC------EEEee------------ccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 44589999998764321 00 01222 26888899999842 3345778999999886
No 125
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.84 E-value=30 Score=31.15 Aligned_cols=26 Identities=23% Similarity=0.593 Sum_probs=22.5
Q ss_pred CCCCChhcHHHHHHHhccCCCCCCcc
Q 013396 73 TSCRHEFHLQCVLEWCQRSSQCPMCW 98 (444)
Q Consensus 73 ~~CgH~FH~~CI~~Wlk~sssCP~CR 98 (444)
+.|++.||.+|-.-+-+.-..||-|-
T Consensus 85 ~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 85 AVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCCCCccccccchhhhhhccCCcCCC
Confidence 38999999999888877777899995
No 126
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=42.31 E-value=25 Score=37.09 Aligned_cols=34 Identities=24% Similarity=0.570 Sum_probs=25.3
Q ss_pred ccCCCCChhcHHHHHHHhccC---------CCCCCcccCCCCC
Q 013396 71 QLTSCRHEFHLQCVLEWCQRS---------SQCPMCWQPISLK 104 (444)
Q Consensus 71 ~l~~CgH~FH~~CI~~Wlk~s---------ssCP~CRq~i~~k 104 (444)
+..+|||+--.+=..-|.+.. ..||.|-+.+.-.
T Consensus 374 aF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 374 AFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred ccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 445999998888888887652 3699998776433
No 127
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.15 E-value=12 Score=36.28 Aligned_cols=24 Identities=33% Similarity=0.736 Sum_probs=17.0
Q ss_pred CCCC-hhcHHHHHHHhccCCCCCCcccCC
Q 013396 74 SCRH-EFHLQCVLEWCQRSSQCPMCWQPI 101 (444)
Q Consensus 74 ~CgH-~FH~~CI~~Wlk~sssCP~CRq~i 101 (444)
||.| .+|..|-.. -..||+|+.+.
T Consensus 175 PCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 175 PCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred cccceEeccccccc----CccCCCCcChh
Confidence 8986 478888533 33599998764
No 128
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=41.18 E-value=18 Score=38.06 Aligned_cols=49 Identities=22% Similarity=0.355 Sum_probs=36.8
Q ss_pred ccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC---CCCCCcc
Q 013396 49 DFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS---SQCPMCW 98 (444)
Q Consensus 49 ~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s---ssCP~CR 98 (444)
+||..|-|||.. ..+-.+-++++-.|||+.-.+-+....++. ..||.|-
T Consensus 332 hfHs~FiCPVlK-e~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 332 HFHSLFICPVLK-ELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred cccceeeccccH-hhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 588888899876 344445566666899999999988877653 3699993
No 129
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=41.12 E-value=18 Score=34.73 Aligned_cols=21 Identities=33% Similarity=0.972 Sum_probs=17.5
Q ss_pred CCCChhcHHHHHHHhccCCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQRSSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssCP~CRq 99 (444)
.|+-.||..|..+ ..||.|-+
T Consensus 177 ~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 177 KCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred cCccccchhhcCC-----CCCCCcHh
Confidence 7999999999762 56999954
No 130
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=40.86 E-value=20 Score=37.76 Aligned_cols=25 Identities=32% Similarity=0.699 Sum_probs=19.4
Q ss_pred CCCChhcHHHHHHHhccCCCCCCcc
Q 013396 74 SCRHEFHLQCVLEWCQRSSQCPMCW 98 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssCP~CR 98 (444)
.|.|.||.+|-.---+.-..||-|-
T Consensus 350 ~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 350 SCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred hccceeeccchHHHHhhhhcCCCcC
Confidence 7999999999654444445799995
No 131
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=40.33 E-value=38 Score=29.03 Aligned_cols=56 Identities=14% Similarity=0.313 Sum_probs=21.1
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHH-HhccCCCCCCcccCCCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLE-WCQRSSQCPMCWQPISLK 104 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~-Wlk~sssCP~CRq~i~~k 104 (444)
+--.|.||-+.+..... ..+.++-..|+--.|+-|..- .-..++.||.|+..+...
T Consensus 8 ~~qiCqiCGD~VGl~~~-----------------------Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTEN-----------------------GEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SS-----------------------SSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred CCcccccccCccccCCC-----------------------CCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 34589999988664321 111222236888899999874 345577899999887643
No 132
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PLN02436 cellulose synthase A
Probab=39.59 E-value=25 Score=42.01 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=22.6
Q ss_pred CCCChhcHHHHHH-HhccCCCCCCcccCCC
Q 013396 74 SCRHEFHLQCVLE-WCQRSSQCPMCWQPIS 102 (444)
Q Consensus 74 ~CgH~FH~~CI~~-Wlk~sssCP~CRq~i~ 102 (444)
.|+---|.-|..- .-+.++.||.|++.+.
T Consensus 60 ~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 60 ECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cCCCccccchhhhhhhcCCccCcccCCchh
Confidence 6888899999842 2344678999999886
No 134
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=38.95 E-value=26 Score=41.86 Aligned_cols=54 Identities=19% Similarity=0.366 Sum_probs=36.2
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHH-HHhccCCCCCCcccCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVL-EWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~-~Wlk~sssCP~CRq~i~ 102 (444)
+-..|.||-|.+..+.. ++ .+|.. ..|+---|+-|.. +.-+.++.||.|++.+.
T Consensus 16 ~~qiCqICGD~vg~~~~-----Ge------~FVAC------------~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVD-----GE------PFVAC------------DVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCC-----CC------EEEEe------------ccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34489999998765321 11 11222 2788889999984 23455789999999886
No 135
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.18 E-value=15 Score=39.91 Aligned_cols=29 Identities=28% Similarity=0.800 Sum_probs=24.4
Q ss_pred CCCChhcHHHHHHHhccCCCCCCcccCCCCCC
Q 013396 74 SCRHEFHLQCVLEWCQRSSQCPMCWQPISLKD 105 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~ 105 (444)
.|. |.-|+.+|+.....||+|+..+...+
T Consensus 495 ~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 495 PCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred ccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 677 89999999999999999988765443
No 136
>PLN02195 cellulose synthase A
Probab=37.23 E-value=41 Score=39.87 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=36.1
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHh--ccCCCCCCcccCCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWC--QRSSQCPMCWQPISL 103 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wl--k~sssCP~CRq~i~~ 103 (444)
....|.||-+.+..+.. ++ .+|.. ..|+---|+-|. ++= +.++.||.|++.+..
T Consensus 5 ~~~~c~~cgd~~~~~~~-----g~------~fvaC------------~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 5 GAPICATCGEEVGVDSN-----GE------AFVAC------------HECSYPLCKACL-EYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CCccceecccccCcCCC-----CC------eEEEe------------ccCCCccccchh-hhhhhcCCccCCccCCcccc
Confidence 34589999998765321 01 01222 278888999998 443 346789999999983
No 137
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=36.66 E-value=12 Score=40.25 Aligned_cols=30 Identities=30% Similarity=0.613 Sum_probs=0.0
Q ss_pred ccccCCCCChhcHHHHHHHhcc------CCCCCCcccCC
Q 013396 69 LLQLTSCRHEFHLQCVLEWCQR------SSQCPMCWQPI 101 (444)
Q Consensus 69 ~~~l~~CgH~FH~~CI~~Wlk~------sssCP~CRq~i 101 (444)
+.++..|||++..+ .|-.. ...||+||+.=
T Consensus 303 P~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 303 PWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp ---------------------------------------
T ss_pred ceeeccccceeeec---ccccccccccccccCCCccccC
Confidence 44555899998754 67532 34799999863
No 138
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=35.98 E-value=19 Score=29.86 Aligned_cols=13 Identities=23% Similarity=0.805 Sum_probs=9.1
Q ss_pred hhcHHHHHHHhcc
Q 013396 78 EFHLQCVLEWCQR 90 (444)
Q Consensus 78 ~FH~~CI~~Wlk~ 90 (444)
-||+.||.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999854
No 139
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=34.43 E-value=25 Score=28.63 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.0
Q ss_pred hhhhhhhcchhhHHHHhhhhhcccCC
Q 013396 370 SEVRREDDAGIERVSGMMERLETRDN 395 (444)
Q Consensus 370 ~~~~re~~agi~~v~~m~e~l~~~~~ 395 (444)
|-+||.+.-|..+-+|+||+||..+=
T Consensus 23 S~lQR~~~IGynrAariid~lE~~Gi 48 (63)
T smart00843 23 SLLQRRLRIGYNRAARLIDQLEEEGI 48 (63)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHCcC
Confidence 56799999999999999999997653
No 140
>PLN02400 cellulose synthase
Probab=33.34 E-value=29 Score=41.43 Aligned_cols=54 Identities=20% Similarity=0.381 Sum_probs=35.4
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHH-HHhccCCCCCCcccCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVL-EWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~-~Wlk~sssCP~CRq~i~ 102 (444)
+...|.||-|.+..+.. ++ .+|.. ..|+---|+-|.. +.-+.++.||.|++.+.
T Consensus 35 ~gqiCqICGD~VG~t~d-----Ge------~FVAC------------~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTET-----GD------VFVAC------------NECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCC-----CC------EEEEE------------ccCCCccccchhheecccCCccCcccCCccc
Confidence 34489999998765321 11 01222 2688889999984 23345778999999886
No 141
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.78 E-value=15 Score=38.34 Aligned_cols=29 Identities=31% Similarity=0.650 Sum_probs=26.5
Q ss_pred CCCChhcHHHHHHHhccCCCCCCcccCCC
Q 013396 74 SCRHEFHLQCVLEWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssCP~CRq~i~ 102 (444)
.|.|.|+.+|...|......||.|+....
T Consensus 123 g~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 123 GCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CceeeeeecCCchhhhhhhccchhhcCcC
Confidence 59999999999999999999999988764
No 142
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=31.50 E-value=42 Score=40.00 Aligned_cols=54 Identities=15% Similarity=0.306 Sum_probs=35.8
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHH-HhccCCCCCCcccCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLE-WCQRSSQCPMCWQPIS 102 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~-Wlk~sssCP~CRq~i~ 102 (444)
....|.||-|.+..+.. ++ .+|.. ..|+---|+-|..- .-+.++.||.|++.+.
T Consensus 14 ~~~~c~iCGd~vg~~~~-----Ge------~FVAC------------~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKED-----GQ------PFVAC------------HVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCC-----CC------EEEEe------------ccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 44589999998765321 11 01222 26888899999942 3345778999999886
No 143
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.87 E-value=35 Score=38.81 Aligned_cols=31 Identities=32% Similarity=0.731 Sum_probs=23.6
Q ss_pred ccCCCCC-hhcHHHHHHHh--cc----CCCCCCcccCC
Q 013396 71 QLTSCRH-EFHLQCVLEWC--QR----SSQCPMCWQPI 101 (444)
Q Consensus 71 ~l~~CgH-~FH~~CI~~Wl--k~----sssCP~CRq~i 101 (444)
.++.||| .-|..|..+.. .. +..||+||..+
T Consensus 14 ~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 14 GRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred ccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 3448999 99999998864 23 45789999855
No 144
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=30.48 E-value=16 Score=40.72 Aligned_cols=23 Identities=35% Similarity=0.884 Sum_probs=17.3
Q ss_pred CCCChhcHHHHHHHhccCCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQRSSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssCP~CRq 99 (444)
.|++.||..|+.. .+..||.|-+
T Consensus 536 ~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 536 TCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred HHHHHHHHHHHhc---cCCCCCchHH
Confidence 6999999999643 3445999943
No 145
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=28.08 E-value=26 Score=23.37 Aligned_cols=19 Identities=26% Similarity=0.845 Sum_probs=14.3
Q ss_pred CCChhcHHHHHHHhccCCCCCCcccCC
Q 013396 75 CRHEFHLQCVLEWCQRSSQCPMCWQPI 101 (444)
Q Consensus 75 CgH~FH~~CI~~Wlk~sssCP~CRq~i 101 (444)
=+..||..|+ .|..|...+
T Consensus 19 ~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 19 LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CCccccccCC--------CCcccCCcC
Confidence 3678888886 688887765
No 146
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.02 E-value=6.4 Score=38.81 Aligned_cols=53 Identities=21% Similarity=0.500 Sum_probs=37.3
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCC-------CCChhcHHHHHHHhccC-CCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTS-------CRHEFHLQCVLEWCQRS-SQCPM 96 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~-------CgH~FH~~CI~~Wlk~s-ssCP~ 96 (444)
..+..|.||...|...+.... |-++ .. |+|..|..|+..-+.+. -.||.
T Consensus 205 ~~~~~c~ic~~~~~~n~~~~~-----------p~vl------------~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~ 261 (296)
T KOG4185|consen 205 IIEKLCEICERIYSENDEKLA-----------PLVL------------SLSRLKEKIEGHTLCKECIDTILLQAGIKCPF 261 (296)
T ss_pred HHHHHHHHHHHHhhccccccc-----------hhHH------------HHHHHHHHHHHHHHHhcchHHHHHHhhhcCCc
Confidence 445789999999985432211 1122 13 99999999999987654 48999
Q ss_pred cccC
Q 013396 97 CWQP 100 (444)
Q Consensus 97 CRq~ 100 (444)
|+..
T Consensus 262 ~~~~ 265 (296)
T KOG4185|consen 262 CTWS 265 (296)
T ss_pred ccce
Confidence 9874
No 147
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=26.95 E-value=39 Score=26.51 Aligned_cols=26 Identities=23% Similarity=0.696 Sum_probs=14.8
Q ss_pred cCCCCChhcHHHHHHHhccCCCCCCc
Q 013396 72 LTSCRHEFHLQCVLEWCQRSSQCPMC 97 (444)
Q Consensus 72 l~~CgH~FH~~CI~~Wlk~sssCP~C 97 (444)
=+.|++.||.+|=.=--+.-..||-|
T Consensus 24 C~~C~~~FC~dCD~fiHE~LH~CPGC 49 (51)
T PF07975_consen 24 CPKCKNHFCIDCDVFIHETLHNCPGC 49 (51)
T ss_dssp -TTTT--B-HHHHHTTTTTS-SSSTT
T ss_pred CCCCCCccccCcChhhhccccCCcCC
Confidence 34899999999954322444579988
No 148
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=26.85 E-value=11 Score=28.28 Aligned_cols=15 Identities=27% Similarity=0.975 Sum_probs=13.1
Q ss_pred CCCChhcHHHHHHHh
Q 013396 74 SCRHEFHLQCVLEWC 88 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wl 88 (444)
.|+|.||..|...|-
T Consensus 45 ~C~~~fC~~C~~~~H 59 (64)
T smart00647 45 KCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCeECCCCCCcCC
Confidence 699999999988883
No 149
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.95 E-value=34 Score=36.37 Aligned_cols=14 Identities=43% Similarity=0.802 Sum_probs=12.2
Q ss_pred CCCChhcHHHHHHH
Q 013396 74 SCRHEFHLQCVLEW 87 (444)
Q Consensus 74 ~CgH~FH~~CI~~W 87 (444)
.|||.||..|...|
T Consensus 183 ~~g~~FC~~C~~~~ 196 (444)
T KOG1815|consen 183 GCGHEFCFACGEES 196 (444)
T ss_pred CCCchhHhhccccc
Confidence 79999999998665
No 150
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=25.07 E-value=45 Score=22.68 Aligned_cols=11 Identities=18% Similarity=0.594 Sum_probs=7.2
Q ss_pred cccccccCCCC
Q 013396 29 ACSICLEPFSD 39 (444)
Q Consensus 29 ~CsICLE~F~~ 39 (444)
.|+-|...+..
T Consensus 2 ~CP~C~~~V~~ 12 (26)
T PF10571_consen 2 TCPECGAEVPE 12 (26)
T ss_pred cCCCCcCCchh
Confidence 47777776654
No 151
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=23.76 E-value=65 Score=32.83 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=22.9
Q ss_pred CCCChhcHHHHHHHhccC--CCCCC--cccCCCCC
Q 013396 74 SCRHEFHLQCVLEWCQRS--SQCPM--CWQPISLK 104 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~s--ssCP~--CRq~i~~k 104 (444)
.|+|.|-++-|...++.. ..||. |-+.....
T Consensus 207 kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~ 241 (275)
T COG5627 207 KCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVD 241 (275)
T ss_pred hhcccccHHHHHHHhcCCceeecchhhcchheecc
Confidence 899999999999999864 35763 54444333
No 152
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=23.08 E-value=79 Score=27.72 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=19.8
Q ss_pred CChhcHHHHHHHhcc---------CCCCCCcccC
Q 013396 76 RHEFHLQCVLEWCQR---------SSQCPMCWQP 100 (444)
Q Consensus 76 gH~FH~~CI~~Wlk~---------sssCP~CRq~ 100 (444)
.=.||..||..++.. .-.||.||-.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 778999999988743 2369999874
No 153
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=22.39 E-value=51 Score=33.67 Aligned_cols=25 Identities=16% Similarity=0.494 Sum_probs=20.3
Q ss_pred CCCChhcHHHHHHHhcc--CCCCCCcc
Q 013396 74 SCRHEFHLQCVLEWCQR--SSQCPMCW 98 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~--sssCP~CR 98 (444)
.|||+|-+.=|...+.. .-.||+=-
T Consensus 194 kC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 194 KCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred CcCcchhhhhHHHHhccCceeeccccc
Confidence 89999999999999866 34588743
No 154
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=21.05 E-value=32 Score=34.54 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=19.1
Q ss_pred CCC-ChhcHHHHHHHh--ccCCCCCCcccCC
Q 013396 74 SCR-HEFHLQCVLEWC--QRSSQCPMCWQPI 101 (444)
Q Consensus 74 ~Cg-H~FH~~CI~~Wl--k~sssCP~CRq~i 101 (444)
.|. -.||+.|+---. +..-.||-|+...
T Consensus 239 ~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 239 GCPIEWFHFTCVGLKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred CCCcceEEEeccccccCCCCcccchhhhhhh
Confidence 599 999999985321 1123699998753
No 155
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=20.94 E-value=65 Score=37.20 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=33.0
Q ss_pred cccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccC--------CCCChhcHHHHHHHhccCCCCCCccc
Q 013396 29 ACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLT--------SCRHEFHLQCVLEWCQRSSQCPMCWQ 99 (444)
Q Consensus 29 ~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~--------~CgH~FH~~CI~~Wlk~sssCP~CRq 99 (444)
-|++|-|+-.-.+ -|.+- |+|+.|-+.+-- +=|-+||++|-.+=-...-.|-+|-.
T Consensus 7 GCCVCSDErGWae--------------NPLVY-CDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~ 70 (900)
T KOG0956|consen 7 GCCVCSDERGWAE--------------NPLVY-CDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPH 70 (900)
T ss_pred ceeeecCcCCCcc--------------Cceee-ecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccC
Confidence 4999988643221 23333 466655544433 44789999997654433456777743
No 156
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=20.73 E-value=22 Score=35.52 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=15.8
Q ss_pred CCChhcHHHHHHHhccCCCCCCccc
Q 013396 75 CRHEFHLQCVLEWCQRSSQCPMCWQ 99 (444)
Q Consensus 75 CgH~FH~~CI~~Wlk~sssCP~CRq 99 (444)
=.|.+|..|-.+|--....||.|-.
T Consensus 195 ~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 195 KRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp EEEEEETTT--EEE--TTS-TTT--
T ss_pred cEEEEcCCCCCeeeecCCCCcCCCC
Confidence 3688999999999888889999954
No 157
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=20.61 E-value=22 Score=27.69 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=18.1
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHh
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWC 88 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wl 88 (444)
+.+...|.+|...|.--.. +.+ +. .||++||..|.....
T Consensus 6 d~~~~~C~~C~~~F~~~~r----------rhh--------Cr--------~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 6 DSEASNCMICGKKFSLFRR----------RHH--------CR--------NCGRVVCSSCSSQRI 44 (69)
T ss_dssp GGG-SB-TTT--B-BSSS-----------EEE---------T--------TT--EEECCCS-EEE
T ss_pred CCCCCcCcCcCCcCCCcee----------eEc--------cC--------CCCCEECCchhCCEE
Confidence 3445689999999964210 001 11 699999999986544
No 158
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the