Query 013396
Match_columns 444
No_of_seqs 240 out of 1521
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 09:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ecl_A Ring-box protein 2; RNF 99.4 5.3E-14 1.8E-18 112.3 3.6 65 25-104 13-77 (81)
2 1v87_A Deltex protein 2; ring- 99.4 5.6E-13 1.9E-17 110.7 6.0 73 25-109 23-100 (114)
3 1t1h_A Gspef-atpub14, armadill 99.3 1.3E-12 4.4E-17 101.8 7.0 67 24-120 5-73 (78)
4 2kiz_A E3 ubiquitin-protein li 99.3 7.8E-13 2.7E-17 100.8 5.2 55 24-105 11-65 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.3 5.4E-13 1.9E-17 97.4 4.1 51 26-102 4-54 (55)
6 2l0b_A E3 ubiquitin-protein li 99.3 3.2E-13 1.1E-17 109.5 3.1 70 7-103 18-89 (91)
7 3dpl_R Ring-box protein 1; ubi 99.3 5.6E-13 1.9E-17 113.0 4.3 67 26-104 36-102 (106)
8 2ect_A Ring finger protein 126 99.3 6.7E-13 2.3E-17 103.4 4.3 56 25-107 13-68 (78)
9 2ep4_A Ring finger protein 24; 99.3 1.4E-12 4.7E-17 100.7 4.6 54 25-105 13-66 (74)
10 1x4j_A Ring finger protein 38; 99.3 6.1E-13 2.1E-17 103.4 2.5 54 24-104 20-73 (75)
11 2ea6_A Ring finger protein 4; 99.3 1.4E-12 4.9E-17 98.2 4.3 57 24-103 12-68 (69)
12 4a0k_B E3 ubiquitin-protein li 99.3 1.9E-13 6.3E-18 118.4 -1.3 77 13-104 37-113 (117)
13 3ng2_A RNF4, snurf, ring finge 99.3 1.1E-12 3.9E-17 99.8 3.2 61 23-106 6-66 (71)
14 2ecm_A Ring finger and CHY zin 99.3 2.4E-12 8.3E-17 93.7 4.8 51 26-102 4-54 (55)
15 3lrq_A E3 ubiquitin-protein li 99.2 3.5E-12 1.2E-16 105.0 4.7 63 27-119 22-86 (100)
16 2djb_A Polycomb group ring fin 99.2 3.8E-12 1.3E-16 98.4 4.5 54 26-108 14-67 (72)
17 2d8t_A Dactylidin, ring finger 99.2 4E-12 1.4E-16 98.0 4.5 50 24-103 12-61 (71)
18 2csy_A Zinc finger protein 183 99.2 8.2E-12 2.8E-16 98.3 5.6 49 24-102 12-60 (81)
19 4ayc_A E3 ubiquitin-protein li 99.2 5.1E-12 1.8E-16 109.3 3.9 48 27-104 53-100 (138)
20 2xeu_A Ring finger protein 4; 99.2 4E-12 1.4E-16 94.4 2.7 57 26-105 2-58 (64)
21 2ysl_A Tripartite motif-contai 99.2 1.2E-11 4E-16 94.8 5.3 51 25-105 18-71 (73)
22 3ztg_A E3 ubiquitin-protein li 99.2 2.6E-11 8.8E-16 97.1 6.5 61 25-115 11-75 (92)
23 2yur_A Retinoblastoma-binding 99.2 1.1E-11 3.8E-16 96.6 4.1 50 26-105 14-66 (74)
24 2y43_A E3 ubiquitin-protein li 99.2 1.5E-11 5.1E-16 100.2 4.9 60 27-115 22-81 (99)
25 2ct2_A Tripartite motif protei 99.2 2.9E-11 9.9E-16 95.3 5.8 55 25-105 13-70 (88)
26 2ecw_A Tripartite motif-contai 99.2 2.2E-11 7.4E-16 94.7 4.9 52 25-106 17-74 (85)
27 2ecy_A TNF receptor-associated 99.2 1.5E-11 5.3E-16 93.3 3.9 51 25-105 13-64 (66)
28 2kre_A Ubiquitin conjugation f 99.2 4.9E-11 1.7E-15 99.6 7.0 66 25-120 27-93 (100)
29 1chc_A Equine herpes virus-1 r 99.1 1.4E-11 4.9E-16 93.3 3.3 49 26-103 4-52 (68)
30 1wgm_A Ubiquitin conjugation f 99.1 6E-11 2E-15 98.8 7.3 67 25-121 20-88 (98)
31 3fl2_A E3 ubiquitin-protein li 99.1 3.9E-11 1.3E-15 101.5 6.0 57 27-113 52-110 (124)
32 2kr4_A Ubiquitin conjugation f 99.1 3.8E-11 1.3E-15 97.0 5.4 61 25-115 12-72 (85)
33 2ecv_A Tripartite motif-contai 99.1 3E-11 1E-15 93.9 4.6 52 25-106 17-74 (85)
34 2egp_A Tripartite motif-contai 99.1 1E-11 3.4E-16 96.3 1.5 51 25-105 10-67 (79)
35 2ecn_A Ring finger protein 141 99.1 1.5E-11 5E-16 94.0 2.0 51 24-105 12-62 (70)
36 2ckl_A Polycomb group ring fin 99.1 7.3E-11 2.5E-15 97.7 5.3 49 27-104 15-63 (108)
37 2d8s_A Cellular modulator of i 99.1 5.7E-11 1.9E-15 96.1 4.4 58 21-106 9-73 (80)
38 4ap4_A E3 ubiquitin ligase RNF 99.1 4.1E-11 1.4E-15 99.8 3.2 59 25-106 5-63 (133)
39 1z6u_A NP95-like ring finger p 99.1 1.3E-10 4.4E-15 103.0 6.1 58 27-114 78-137 (150)
40 2ysj_A Tripartite motif-contai 99.1 9.1E-11 3.1E-15 88.1 4.4 43 25-97 18-63 (63)
41 1jm7_A BRCA1, breast cancer ty 99.1 6.6E-11 2.3E-15 97.2 3.9 52 27-108 21-75 (112)
42 2c2l_A CHIP, carboxy terminus 99.0 1.7E-10 5.7E-15 106.9 5.6 63 23-115 204-267 (281)
43 2ecj_A Tripartite motif-contai 99.0 2E-10 6.8E-15 84.1 4.0 43 25-97 13-58 (58)
44 2yu4_A E3 SUMO-protein ligase 99.0 2.9E-10 1E-14 93.1 5.4 61 25-115 5-75 (94)
45 1g25_A CDK-activating kinase a 99.0 1.9E-10 6.5E-15 87.0 3.4 55 26-106 2-58 (65)
46 3hct_A TNF receptor-associated 99.0 2.3E-10 7.8E-15 96.4 3.5 50 26-105 17-67 (118)
47 2ckl_B Ubiquitin ligase protei 99.0 3E-10 1E-14 100.4 4.3 49 27-104 54-103 (165)
48 1jm7_B BARD1, BRCA1-associated 98.9 3.2E-10 1.1E-14 95.4 3.5 58 27-115 22-79 (117)
49 3l11_A E3 ubiquitin-protein li 98.9 1.1E-10 3.6E-15 97.5 0.4 48 26-103 14-62 (115)
50 1rmd_A RAG1; V(D)J recombinati 98.9 4.6E-10 1.6E-14 93.7 4.1 50 27-106 23-73 (116)
51 2ct0_A Non-SMC element 1 homol 98.9 8.5E-10 2.9E-14 88.8 4.8 52 26-106 14-67 (74)
52 4ap4_A E3 ubiquitin ligase RNF 98.9 3.7E-10 1.3E-14 94.1 2.1 59 24-105 69-127 (133)
53 1e4u_A Transcriptional repress 98.9 1.9E-09 6.5E-14 86.5 5.7 55 25-105 9-64 (78)
54 1bor_A Transcription factor PM 98.9 4.5E-10 1.5E-14 83.8 1.4 49 24-105 3-51 (56)
55 2f42_A STIP1 homology and U-bo 98.8 3.8E-09 1.3E-13 97.5 5.4 61 25-115 104-165 (179)
56 3knv_A TNF receptor-associated 98.8 1.4E-09 4.8E-14 95.6 2.1 50 25-104 29-79 (141)
57 2y1n_A E3 ubiquitin-protein li 98.7 5.6E-09 1.9E-13 106.4 5.0 48 27-104 332-380 (389)
58 3hcs_A TNF receptor-associated 98.7 5.3E-09 1.8E-13 92.6 3.5 51 26-106 17-68 (170)
59 2vje_A E3 ubiquitin-protein li 98.7 6.2E-09 2.1E-13 79.9 3.0 50 25-102 6-56 (64)
60 4ic3_A E3 ubiquitin-protein li 98.7 5E-09 1.7E-13 82.1 2.3 43 27-103 24-67 (74)
61 2vje_B MDM4 protein; proto-onc 98.6 1.4E-08 4.8E-13 77.7 3.0 48 27-102 7-55 (63)
62 3htk_C E3 SUMO-protein ligase 98.5 3.1E-08 1.1E-12 96.7 4.0 61 26-115 180-244 (267)
63 2ecg_A Baculoviral IAP repeat- 98.5 5.8E-08 2E-12 75.9 3.1 43 27-103 25-68 (75)
64 2ea5_A Cell growth regulator w 98.4 1.6E-07 5.4E-12 73.2 4.1 47 23-103 11-58 (68)
65 3k1l_B Fancl; UBC, ring, RWD, 98.4 5.6E-08 1.9E-12 98.5 1.8 55 24-102 305-372 (381)
66 2bay_A PRE-mRNA splicing facto 98.4 1.1E-07 3.7E-12 73.1 2.9 51 28-107 4-54 (61)
67 2yho_A E3 ubiquitin-protein li 98.4 8.2E-08 2.8E-12 76.7 1.9 43 27-103 18-61 (79)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.3 2.7E-07 9.3E-12 70.9 3.4 26 78-103 32-59 (60)
69 3t6p_A Baculoviral IAP repeat- 98.3 1.9E-07 6.5E-12 93.4 1.7 44 26-103 294-338 (345)
70 1wim_A KIAA0161 protein; ring 98.3 1.3E-07 4.4E-12 76.6 0.1 48 26-100 4-61 (94)
71 3nw0_A Non-structural maintena 97.6 3.9E-05 1.3E-09 73.1 4.7 52 27-107 180-233 (238)
72 3vk6_A E3 ubiquitin-protein li 97.4 0.00011 3.9E-09 62.7 4.2 32 73-104 18-50 (101)
73 2jun_A Midline-1; B-BOX, TRIM, 92.8 0.042 1.5E-06 44.4 1.9 15 74-88 23-37 (101)
74 2ko5_A Ring finger protein Z; 92.7 0.064 2.2E-06 45.7 3.0 30 75-104 45-74 (99)
75 3m62_A Ubiquitin conjugation f 91.3 0.19 6.3E-06 56.8 5.5 67 25-121 889-957 (968)
76 2lri_C Autoimmune regulator; Z 91.1 0.2 6.7E-06 39.2 3.9 28 74-101 29-60 (66)
77 1wil_A KIAA1045 protein; ring 86.7 0.93 3.2E-05 37.9 5.1 14 74-87 34-47 (89)
78 3o36_A Transcription intermedi 83.7 0.24 8.3E-06 44.5 0.3 28 74-101 21-52 (184)
79 3u5n_A E3 ubiquitin-protein li 83.1 0.27 9.1E-06 45.2 0.4 28 74-101 24-55 (207)
80 2l5u_A Chromodomain-helicase-D 80.2 0.86 2.9E-05 34.6 2.2 26 74-99 28-57 (61)
81 1weu_A Inhibitor of growth fam 79.6 1.6 5.4E-05 36.3 3.8 25 75-101 57-86 (91)
82 1we9_A PHD finger family prote 78.4 0.3 1E-05 36.9 -0.8 50 25-100 4-58 (64)
83 2lbm_A Transcriptional regulat 77.3 0.98 3.3E-05 40.4 2.0 26 74-99 80-116 (142)
84 2ysm_A Myeloid/lymphoid or mix 76.8 0.79 2.7E-05 38.1 1.2 25 74-98 27-55 (111)
85 1xwh_A Autoimmune regulator; P 76.2 0.45 1.5E-05 36.6 -0.4 28 74-101 25-56 (66)
86 1mm2_A MI2-beta; PHD, zinc fin 75.4 0.81 2.8E-05 34.8 0.8 27 74-100 26-56 (61)
87 2k16_A Transcription initiatio 71.0 0.8 2.7E-05 35.6 -0.1 29 74-102 38-70 (75)
88 1wen_A Inhibitor of growth fam 70.4 3 0.0001 32.8 3.0 25 75-101 37-66 (71)
89 1fp0_A KAP-1 corepressor; PHD 70.0 2 7E-05 35.5 2.1 31 74-104 42-76 (88)
90 3lqh_A Histone-lysine N-methyl 66.4 1.7 5.7E-05 40.1 1.0 51 28-101 3-64 (183)
91 3i2d_A E3 SUMO-protein ligase 66.2 4.9 0.00017 41.0 4.4 37 74-110 267-307 (371)
92 2ri7_A Nucleosome-remodeling f 65.5 1.5 5.3E-05 38.7 0.5 27 74-100 28-59 (174)
93 1weo_A Cellulose synthase, cat 64.9 12 0.00043 31.4 5.8 54 26-102 15-69 (93)
94 1f62_A Transcription factor WS 62.3 4.1 0.00014 29.3 2.2 26 74-99 20-49 (51)
95 2puy_A PHD finger protein 21A; 61.5 1.3 4.3E-05 33.3 -0.7 27 74-100 22-52 (60)
96 1wem_A Death associated transc 61.2 2.3 7.8E-05 33.2 0.7 28 74-101 35-71 (76)
97 4fo9_A E3 SUMO-protein ligase 61.0 7 0.00024 39.7 4.4 36 74-109 233-272 (360)
98 2cs3_A Protein C14ORF4, MY039 60.2 8.3 0.00028 32.2 3.9 36 25-90 13-52 (93)
99 2yql_A PHD finger protein 21A; 60.1 0.87 3E-05 33.8 -1.8 26 74-99 26-55 (56)
100 3ql9_A Transcriptional regulat 59.2 7.8 0.00027 34.1 3.8 26 74-99 74-110 (129)
101 2e6r_A Jumonji/ARID domain-con 59.1 0.87 3E-05 37.4 -2.1 26 74-99 36-65 (92)
102 2lv9_A Histone-lysine N-methyl 56.2 3.2 0.00011 34.3 0.8 26 74-99 47-75 (98)
103 1wep_A PHF8; structural genomi 54.8 9.1 0.00031 30.1 3.2 28 74-101 32-64 (79)
104 2ro1_A Transcription intermedi 53.7 4.2 0.00014 37.1 1.2 28 74-101 19-50 (189)
105 2e6s_A E3 ubiquitin-protein li 47.4 2.9 9.9E-05 33.4 -0.8 26 74-99 46-76 (77)
106 2l43_A N-teminal domain from h 46.8 3.3 0.00011 33.7 -0.6 31 74-104 47-79 (88)
107 2vpb_A Hpygo1, pygopus homolog 46.5 9.1 0.00031 29.6 1.9 36 25-85 6-41 (65)
108 2yt5_A Metal-response element- 45.8 5.4 0.00019 30.0 0.6 28 74-101 28-62 (66)
109 3v43_A Histone acetyltransfera 45.1 6.3 0.00021 32.9 0.9 26 74-99 82-111 (112)
110 1wew_A DNA-binding family prot 44.8 6.8 0.00023 30.9 1.0 28 74-101 37-73 (78)
111 3ask_A E3 ubiquitin-protein li 43.5 4.1 0.00014 39.0 -0.6 26 74-99 194-224 (226)
112 3v43_A Histone acetyltransfera 42.5 25 0.00085 29.2 4.2 25 74-98 31-62 (112)
113 2g6q_A Inhibitor of growth pro 40.1 2.6 8.8E-05 32.4 -2.1 23 75-99 32-59 (62)
114 2xb1_A Pygopus homolog 2, B-ce 40.0 9.7 0.00033 31.8 1.3 28 74-101 25-62 (105)
115 1wev_A Riken cDNA 1110020M19; 38.0 1.8 6E-05 35.2 -3.5 29 74-102 38-74 (88)
116 1z60_A TFIIH basal transcripti 38.0 11 0.00039 29.0 1.3 24 74-97 35-58 (59)
117 2vnf_A ING 4, P29ING4, inhibit 37.7 2.8 9.6E-05 31.8 -2.2 23 75-99 31-58 (60)
118 2kgg_A Histone demethylase jar 36.2 8 0.00027 28.2 0.1 25 74-98 24-52 (52)
119 3asl_A E3 ubiquitin-protein li 34.2 5.3 0.00018 31.2 -1.2 26 74-99 38-68 (70)
120 1z2q_A LM5-1; membrane protein 33.0 23 0.00078 28.2 2.3 39 23-87 17-55 (84)
121 2rsd_A E3 SUMO-protein ligase 33.0 2.6 9E-05 32.5 -3.1 26 74-99 31-64 (68)
122 3mpx_A FYVE, rhogef and PH dom 32.3 9.5 0.00033 37.6 0.0 27 74-100 396-429 (434)
123 2ku3_A Bromodomain-containing 32.0 31 0.0011 27.0 2.9 26 74-99 38-65 (71)
124 1joc_A EEA1, early endosomal a 31.4 19 0.00065 30.9 1.8 38 24-87 66-103 (125)
125 2yw8_A RUN and FYVE domain-con 30.4 22 0.00076 28.1 1.9 39 23-87 15-53 (82)
126 2o35_A Hypothetical protein DU 30.1 17 0.00058 31.2 1.2 13 78-90 42-54 (105)
127 3fyb_A Protein of unknown func 29.6 18 0.0006 31.1 1.2 13 78-90 41-53 (104)
128 3c6w_A P28ING5, inhibitor of g 29.4 5.3 0.00018 30.2 -1.8 23 75-99 30-57 (59)
129 3t7l_A Zinc finger FYVE domain 28.3 24 0.00082 28.5 1.8 15 74-88 41-55 (90)
130 2kwj_A Zinc finger protein DPF 28.3 27 0.00092 29.2 2.1 25 74-98 28-59 (114)
131 1x4u_A Zinc finger, FYVE domai 27.8 23 0.00078 28.1 1.5 38 23-86 10-47 (84)
132 4gne_A Histone-lysine N-methyl 26.9 28 0.00097 29.4 2.0 29 74-104 34-66 (107)
133 3shb_A E3 ubiquitin-protein li 26.6 8.1 0.00028 30.9 -1.3 26 74-99 46-76 (77)
134 1dvp_A HRS, hepatocyte growth 25.7 19 0.00065 33.0 0.8 35 27-87 161-195 (220)
135 2zet_C Melanophilin; complex, 24.3 26 0.0009 31.3 1.4 50 24-99 65-116 (153)
136 3zyq_A Hepatocyte growth facto 24.3 25 0.00086 32.7 1.3 35 27-87 164-198 (226)
137 2ve8_A FTSK, DNA translocase F 23.9 40 0.0014 27.1 2.3 29 370-398 28-56 (73)
138 3kv5_D JMJC domain-containing 22.9 12 0.00043 39.0 -1.1 26 74-99 57-87 (488)
139 2gmg_A Hypothetical protein PF 22.1 23 0.0008 30.3 0.6 26 74-104 72-97 (105)
140 1vfy_A Phosphatidylinositol-3- 21.9 40 0.0014 26.1 1.8 13 74-86 32-44 (73)
141 2jmi_A Protein YNG1, ING1 homo 21.8 24 0.00082 29.1 0.6 25 75-99 47-75 (90)
142 1zbd_B Rabphilin-3A; G protein 21.5 25 0.00086 30.7 0.7 14 25-38 53-66 (134)
143 2jmo_A Parkin; IBR, E3 ligase, 20.6 9.9 0.00034 30.1 -1.9 19 74-94 55-73 (80)
No 1
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=5.3e-14 Score=112.32 Aligned_cols=65 Identities=23% Similarity=0.523 Sum_probs=48.3
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLK 104 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k 104 (444)
.+++.|+||++.|.+.++.+..... ....++++++|+|.||..||.+|++.+.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~---------------~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENK---------------QEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTC---------------TTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccC---------------CCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 4578899999999887655433100 1112334447999999999999999999999999988643
No 2
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.36 E-value=5.6e-13 Score=110.68 Aligned_cols=73 Identities=29% Similarity=0.476 Sum_probs=47.8
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHh-----ccCCCCCCccc
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWC-----QRSSQCPMCWQ 99 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wl-----k~sssCP~CRq 99 (444)
..++.|+||++.|.................. .+..+.+|+|.||..||..|+ +....||+||.
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~ 90 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPM------------VVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSS------------CCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcc------------cceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCC
Confidence 3467999999999875422111000000000 112234899999999999999 45678999999
Q ss_pred CCCCCCCCcc
Q 013396 100 PISLKDPTRF 109 (444)
Q Consensus 100 ~i~~k~~~~~ 109 (444)
.+..+..+++
T Consensus 91 ~~~~~~g~qp 100 (114)
T 1v87_A 91 IYGEKTGTQP 100 (114)
T ss_dssp BSSSCSSSCT
T ss_pred ccCCCCCCCC
Confidence 9987765544
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.35 E-value=1.3e-12 Score=101.82 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=53.0
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc-CCCCCCcccCCC
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR-SSQCPMCWQPIS 102 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~-sssCP~CRq~i~ 102 (444)
-..+..|+||++.|.+ ||++ +|||.||..||.+|++. ...||+||+.+.
T Consensus 5 ~~~~~~C~IC~~~~~~-----------------Pv~~-------------~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD-----------------PVIV-------------STGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSS-----------------EEEE-------------TTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccC-----------------CEEc-------------CCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 3457899999999877 7788 89999999999999987 678999999998
Q ss_pred CCCCCccchHHHH-HHHHH
Q 013396 103 LKDPTRFCVNFAA-RNYLR 120 (444)
Q Consensus 103 ~k~~~~~~~~~av-r~~lR 120 (444)
..+..++..+..+ ..+.+
T Consensus 55 ~~~l~~n~~l~~~i~~~~~ 73 (78)
T 1t1h_A 55 HAGLTPNYVLKSLIALWCE 73 (78)
T ss_dssp SCCCEECTTTHHHHHHHHH
T ss_pred hhhCccCHHHHHHHHHHHH
Confidence 7766555544444 34433
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=7.8e-13 Score=100.82 Aligned_cols=55 Identities=31% Similarity=0.764 Sum_probs=45.0
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCC
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
...+..|+||++.|..+.. +++| +|||.||..||.+|++....||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~--------------~~~~-------------~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGED--------------VRRL-------------PCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSC--------------EEEC-------------TTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCc--------------EEEe-------------CCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 4456789999999876432 3444 899999999999999998899999999876
Q ss_pred CC
Q 013396 104 KD 105 (444)
Q Consensus 104 k~ 105 (444)
..
T Consensus 64 ~~ 65 (69)
T 2kiz_A 64 QL 65 (69)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.34 E-value=5.4e-13 Score=97.35 Aligned_cols=51 Identities=31% Similarity=0.799 Sum_probs=41.7
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~ 102 (444)
++..|+||++.|..++.. +++ +.|||.||..||.+|++.+..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~--------------~~~------------~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEA--------------RFL------------PRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCC--------------EEC------------SSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCce--------------EEC------------CCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 467899999999875432 223 249999999999999999999999999874
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.34 E-value=3.2e-13 Score=109.53 Aligned_cols=70 Identities=24% Similarity=0.530 Sum_probs=52.0
Q ss_pred hhhhhcCchhhhcCCCC--CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHH
Q 013396 7 CDARLTSPAAFVEGGIQ--DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCV 84 (444)
Q Consensus 7 ~~~~l~S~~a~ve~~iq--d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI 84 (444)
.++.+.+.+.++..... ...+..|+||++.|..+.. +++| +|||.||..||
T Consensus 18 s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~--------------~~~l-------------~C~H~Fh~~Ci 70 (91)
T 2l0b_A 18 SKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDV--------------ATEL-------------PCHHYFHKPCV 70 (91)
T ss_dssp CHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCE--------------EEEE-------------TTTEEEEHHHH
T ss_pred CHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCc--------------EEec-------------CCCChHHHHHH
Confidence 44555555555543322 3456789999999987432 3445 79999999999
Q ss_pred HHHhccCCCCCCcccCCCC
Q 013396 85 LEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 85 ~~Wlk~sssCP~CRq~i~~ 103 (444)
.+|++.+..||+||+.+..
T Consensus 71 ~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 71 SIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp HHHHTTTCBCTTTCCBSSC
T ss_pred HHHHHcCCcCcCcCccCCC
Confidence 9999999999999998753
No 7
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.33 E-value=5.6e-13 Score=113.00 Aligned_cols=67 Identities=19% Similarity=0.427 Sum_probs=47.3
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLK 104 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k 104 (444)
+++.|+||++.|.+.++.+....... .| ..+++++.+|+|.||..||.+|++.+.+||+||+.|..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~-----------~~-~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASA-----------TS-EECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---------------CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCccCChhHhCcCchhhcccccc-----------CC-ccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 47899999999998776443200000 00 011223338999999999999999999999999997643
No 8
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.33 E-value=6.7e-13 Score=103.41 Aligned_cols=56 Identities=25% Similarity=0.755 Sum_probs=45.6
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLK 104 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k 104 (444)
..+..|+||++.|..... +++| +|+|.||..||.+|++....||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~--------------~~~~-------------~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGES--------------VRQL-------------PCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSC--------------EEEC-------------TTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCC--------------EEEe-------------CCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 446789999999986432 2333 7999999999999999989999999999876
Q ss_pred CCC
Q 013396 105 DPT 107 (444)
Q Consensus 105 ~~~ 107 (444)
+..
T Consensus 66 ~~~ 68 (78)
T 2ect_A 66 NTA 68 (78)
T ss_dssp CSC
T ss_pred ccC
Confidence 543
No 9
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=100.69 Aligned_cols=54 Identities=31% Similarity=0.864 Sum_probs=44.1
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLK 104 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k 104 (444)
..+..|+||++.|..... .++| +|+|.||..||.+|++....||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~--------------~~~~-------------~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDE--------------LGIC-------------PCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSC--------------EEEE-------------TTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCc--------------EEEc-------------CCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 446789999999987432 2334 7999999999999999888999999998654
Q ss_pred C
Q 013396 105 D 105 (444)
Q Consensus 105 ~ 105 (444)
.
T Consensus 66 ~ 66 (74)
T 2ep4_A 66 A 66 (74)
T ss_dssp C
T ss_pred c
Confidence 3
No 10
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=6.1e-13 Score=103.37 Aligned_cols=54 Identities=28% Similarity=0.768 Sum_probs=44.4
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCC
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
..++..|+||++.|..+.. +++| +|+|.||..||.+|++.+..||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~--------------~~~l-------------~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQL--------------LRVL-------------PCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCE--------------EEEE-------------TTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCe--------------EEEE-------------CCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3457789999999887432 3444 799999999999999999999999998865
Q ss_pred C
Q 013396 104 K 104 (444)
Q Consensus 104 k 104 (444)
.
T Consensus 73 ~ 73 (75)
T 1x4j_A 73 S 73 (75)
T ss_dssp C
T ss_pred C
Confidence 3
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=98.24 Aligned_cols=57 Identities=25% Similarity=0.575 Sum_probs=44.1
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCC
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
..++..|+||++.|.+...... .++++ +|||.||..||.+|++....||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~----------~~~~~-------------~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGR----------LIVST-------------ECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTC----------CEEEC-------------SSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccC----------CeEeC-------------CCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3457789999999876321111 13445 899999999999999998899999998754
No 12
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.28 E-value=1.9e-13 Score=118.44 Aligned_cols=77 Identities=19% Similarity=0.380 Sum_probs=6.5
Q ss_pred CchhhhcCCCCCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCC
Q 013396 13 SPAAFVEGGIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSS 92 (444)
Q Consensus 13 S~~a~ve~~iqd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~ss 92 (444)
.+.+++.+++. ++.|+||++.|.+.++.+...... .....+.+++++|+|.||.+||.+|++.+.
T Consensus 37 ~ava~w~wd~~---~d~CaICl~~~~~~c~~C~~~~~~------------~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~ 101 (117)
T 4a0k_B 37 NAVALWAWDIV---VDNCAICRNHIMDLCIECQANQAS------------ATSEECTVAWGVCNHAFHFHCISRWLKTRQ 101 (117)
T ss_dssp EEEEEEEECCC---C-----------------------------------------------------------------
T ss_pred EEEEEEeecCC---CCcCeECChhhcCcChhhhccccc------------ccccccccccCCcCceEcHHHHHHHHHcCC
Confidence 34555665553 689999999999876544331000 001123344558999999999999999999
Q ss_pred CCCCcccCCCCC
Q 013396 93 QCPMCWQPISLK 104 (444)
Q Consensus 93 sCP~CRq~i~~k 104 (444)
+||+||+.|..+
T Consensus 102 ~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 102 VCPLDNREWEFQ 113 (117)
T ss_dssp ------------
T ss_pred cCCCCCCeeeee
Confidence 999999997643
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.28 E-value=1.1e-12 Score=99.76 Aligned_cols=61 Identities=25% Similarity=0.538 Sum_probs=46.5
Q ss_pred CCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCC
Q 013396 23 QDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 23 qd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~ 102 (444)
...++..|+||++.|.+..... ..++++ +|||.||..||.+|++....||+||+.+.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~----------~~~~~~-------------~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNG----------RLIVST-------------ECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTT----------CCEEEC-------------TTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCcccChhhhcccccc----------CCeEeC-------------CCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 4456789999999987631000 012444 89999999999999999999999999987
Q ss_pred CCCC
Q 013396 103 LKDP 106 (444)
Q Consensus 103 ~k~~ 106 (444)
..+.
T Consensus 63 ~~~~ 66 (71)
T 3ng2_A 63 HKRY 66 (71)
T ss_dssp CCSC
T ss_pred hhhe
Confidence 6653
No 14
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.28 E-value=2.4e-12 Score=93.67 Aligned_cols=51 Identities=33% Similarity=0.696 Sum_probs=41.8
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~ 102 (444)
.+..|+||++.|.+.... ++++ +|+|.||..||.+|++....||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~-------------~~~~-------------~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVV-------------AHVL-------------PCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSC-------------EEEC-------------TTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcC-------------eEec-------------CCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 467899999998754311 3444 89999999999999998899999999864
No 15
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.25 E-value=3.5e-12 Score=105.03 Aligned_cols=63 Identities=24% Similarity=0.554 Sum_probs=50.9
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeee-eccCCccccccccCCCCChhcHHHHHHHhccC-CCCCCcccCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVI-LRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS-SQCPMCWQPISLK 104 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pVi-L~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s-ssCP~CRq~i~~k 104 (444)
+..|+||++.|.+ ||+ + +|||.||..||.+|++.. ..||+||..+...
T Consensus 22 ~~~C~IC~~~~~~-----------------p~~~~-------------~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 22 VFRCFICMEKLRD-----------------ARLCP-------------HCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HTBCTTTCSBCSS-----------------EEECT-------------TTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCccCCccccC-----------------ccccC-------------CCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 5689999999876 566 5 899999999999999887 6999999999877
Q ss_pred CCCccchHHHHHHHH
Q 013396 105 DPTRFCVNFAARNYL 119 (444)
Q Consensus 105 ~~~~~~~~~avr~~l 119 (444)
+.........+...+
T Consensus 72 ~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 72 ELVNCRWAEEVTQQL 86 (100)
T ss_dssp GCEECTTHHHHHHHH
T ss_pred HhHhhHHHHHHHHHH
Confidence 666666555553333
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.8e-12 Score=98.36 Aligned_cols=54 Identities=28% Similarity=0.543 Sum_probs=44.6
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKD 105 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~ 105 (444)
.+..|+||++.|.+ ||++ ++|||.||..||.+|++....||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~~~-----------------p~~~------------~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 14 PYILCSICKGYLID-----------------ATTI------------TECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GGGSCTTTSSCCSS-----------------CEEC------------SSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCChHHHC-----------------cCEE------------CCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 36789999999876 3333 289999999999999998889999999998766
Q ss_pred CCc
Q 013396 106 PTR 108 (444)
Q Consensus 106 ~~~ 108 (444)
+..
T Consensus 65 ~~~ 67 (72)
T 2djb_A 65 PLS 67 (72)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4e-12 Score=97.99 Aligned_cols=50 Identities=30% Similarity=0.589 Sum_probs=43.5
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCC
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
..++..|+||++.|.+ ||++ +|||.||..||.+|++....||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~-----------------~~~~-------------~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH-----------------PVSL-------------PCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSS-----------------EEEE-------------TTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCC-----------------CEEc-------------cCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4456789999999866 6667 899999999999999988999999998864
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=8.2e-12 Score=98.29 Aligned_cols=49 Identities=33% Similarity=0.711 Sum_probs=43.0
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCC
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~ 102 (444)
...+..|+||++.|.+ ||++ +|||.||..||.+|++....||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~-----------------p~~~-------------~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN-----------------PVVT-------------KCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS-----------------EEEC-------------TTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC-----------------eeEc-------------cCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3456789999999876 6666 89999999999999998889999999986
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.21 E-value=5.1e-12 Score=109.35 Aligned_cols=48 Identities=40% Similarity=0.895 Sum_probs=42.9
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLK 104 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k 104 (444)
+..|+||++.|.+ ||+| +|||.||..||..|+.....||+||+++...
T Consensus 53 ~~~C~iC~~~~~~-----------------~~~~-------------~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIE-----------------AVTL-------------NCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSS-----------------EEEE-------------TTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCC-----------------ceEC-------------CCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 5679999999876 7778 8999999999999999999999999998644
No 20
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.21 E-value=4e-12 Score=94.45 Aligned_cols=57 Identities=26% Similarity=0.579 Sum_probs=44.0
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKD 105 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~ 105 (444)
++..|+||++.|.+..... ..++++ +|||.||..||.+|++.+..||+||+.+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~----------~~~~~~-------------~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNG----------RLIVST-------------ECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTT----------CCEEEE-------------TTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccC----------CCEEeC-------------CCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 3678999999987631000 013455 89999999999999999889999999987654
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=94.78 Aligned_cols=51 Identities=25% Similarity=0.669 Sum_probs=42.9
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhc---cCCCCCCcccCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQ---RSSQCPMCWQPI 101 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk---~sssCP~CRq~i 101 (444)
..+..|+||++.|.+ ||+| +|||.||..||.+|++ ....||+||+.+
T Consensus 18 ~~~~~C~IC~~~~~~-----------------~~~~-------------~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 18 QEEVICPICLDILQK-----------------PVTI-------------DCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCBCTTTCSBCSS-----------------EEEC-------------TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred ccCCEeccCCcccCC-----------------eEEc-------------CCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 446789999999876 6666 8999999999999997 345899999998
Q ss_pred CCCC
Q 013396 102 SLKD 105 (444)
Q Consensus 102 ~~k~ 105 (444)
...+
T Consensus 68 ~~~~ 71 (73)
T 2ysl_A 68 RKNA 71 (73)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7654
No 22
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.18 E-value=2.6e-11 Score=97.14 Aligned_cols=61 Identities=21% Similarity=0.369 Sum_probs=46.6
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCC-CCChhcHHHHHHHhccC--CCCCCcccCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTS-CRHEFHLQCVLEWCQRS--SQCPMCWQPI 101 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~-CgH~FH~~CI~~Wlk~s--ssCP~CRq~i 101 (444)
.++..|+||++.|.+ ||+| + |||.||..||..|+... ..||+||+.+
T Consensus 11 ~~~~~C~IC~~~~~~-----------------p~~~-------------~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTD-----------------AVVI-------------PCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSS-----------------CEEC-------------TTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcC-----------------ceEC-------------CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 346789999999886 6667 7 99999999999999654 5899999997
Q ss_pred C-CCCCCccchHHHH
Q 013396 102 S-LKDPTRFCVNFAA 115 (444)
Q Consensus 102 ~-~k~~~~~~~~~av 115 (444)
. ......+..+..+
T Consensus 61 ~~~~~~~~n~~l~~~ 75 (92)
T 3ztg_A 61 VSPDALIANKFLRQA 75 (92)
T ss_dssp CCTTSCEECHHHHHH
T ss_pred CCccccCcCHHHHHH
Confidence 4 4444444444444
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=96.57 Aligned_cols=50 Identities=26% Similarity=0.563 Sum_probs=41.9
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCC-CCChhcHHHHHHHhccC--CCCCCcccCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTS-CRHEFHLQCVLEWCQRS--SQCPMCWQPIS 102 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~-CgH~FH~~CI~~Wlk~s--ssCP~CRq~i~ 102 (444)
++..|+||++.|.+ ||+| + |||.||..||..|++.. ..||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~-----------------p~~~-------------~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMTD-----------------AVVI-------------PCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCTT-----------------CEEC-------------SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHhC-----------------CeEc-------------CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 46789999999876 5666 7 99999999999999765 58999999865
Q ss_pred CCC
Q 013396 103 LKD 105 (444)
Q Consensus 103 ~k~ 105 (444)
..+
T Consensus 64 ~~~ 66 (74)
T 2yur_A 64 SPD 66 (74)
T ss_dssp CTT
T ss_pred Ccc
Confidence 544
No 24
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=100.17 Aligned_cols=60 Identities=23% Similarity=0.510 Sum_probs=48.4
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDP 106 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~~ 106 (444)
+..|+||++.|.+ ||++ .+|||.||..||..|+.....||+||..+...+.
T Consensus 22 ~~~C~IC~~~~~~-----------------p~~~------------~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l 72 (99)
T 2y43_A 22 LLRCGICFEYFNI-----------------AMII------------PQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDL 72 (99)
T ss_dssp HTBCTTTCSBCSS-----------------EEEC------------TTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred CCCcccCChhhCC-----------------cCEE------------CCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhC
Confidence 5689999999876 4444 2799999999999999988899999999987665
Q ss_pred CccchHHHH
Q 013396 107 TRFCVNFAA 115 (444)
Q Consensus 107 ~~~~~~~av 115 (444)
..+..+..+
T Consensus 73 ~~n~~l~~~ 81 (99)
T 2y43_A 73 KNNRILDEL 81 (99)
T ss_dssp EECHHHHHH
T ss_pred CcCHHHHHH
Confidence 555555544
No 25
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.9e-11 Score=95.25 Aligned_cols=55 Identities=27% Similarity=0.608 Sum_probs=44.4
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC---CCCCCcccCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS---SQCPMCWQPI 101 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s---ssCP~CRq~i 101 (444)
.++..|+||++.|.+... .|++| +|||.||..||.+|++.. ..||+||+.+
T Consensus 13 ~~~~~C~IC~~~~~~~~~-------------~~~~~-------------~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 13 REVLECPICMESFTEEQL-------------RPKLL-------------HCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp CSCCBCTTTCCBCCTTSS-------------CEEEC-------------SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred cCCCCCccCCccccccCC-------------CeEEC-------------CCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 346789999999987431 15666 899999999999999875 6899999988
Q ss_pred CCCC
Q 013396 102 SLKD 105 (444)
Q Consensus 102 ~~k~ 105 (444)
...+
T Consensus 67 ~~~~ 70 (88)
T 2ct2_A 67 RITS 70 (88)
T ss_dssp CCSS
T ss_pred cchh
Confidence 7654
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.16 E-value=2.2e-11 Score=94.70 Aligned_cols=52 Identities=27% Similarity=0.649 Sum_probs=43.4
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc------CCCCCCcc
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR------SSQCPMCW 98 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~------sssCP~CR 98 (444)
.++..|+||++.|.+ ||++ +|||.||..||..|+.. ...||+||
T Consensus 17 ~~~~~C~IC~~~~~~-----------------p~~~-------------~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr 66 (85)
T 2ecw_A 17 KEEVTCPICLELLKE-----------------PVSA-------------DCNHSFCRACITLNYESNRNTDGKGNCPVCR 66 (85)
T ss_dssp CTTTSCTTTCSCCSS-----------------CEEC-------------TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTC
T ss_pred ccCCCCcCCChhhCc-----------------ceeC-------------CCCCHHHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 346789999999876 4555 89999999999999977 56899999
Q ss_pred cCCCCCCC
Q 013396 99 QPISLKDP 106 (444)
Q Consensus 99 q~i~~k~~ 106 (444)
+.+...+.
T Consensus 67 ~~~~~~~~ 74 (85)
T 2ecw_A 67 VPYPFGNL 74 (85)
T ss_dssp CCCCTTCC
T ss_pred CcCCHHhC
Confidence 99876543
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.5e-11 Score=93.26 Aligned_cols=51 Identities=20% Similarity=0.408 Sum_probs=41.7
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhc-cCCCCCCcccCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQ-RSSQCPMCWQPISL 103 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk-~sssCP~CRq~i~~ 103 (444)
.++..|+||++.|.+ ||++ +|||.||..||.+|++ ....||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~-----------------p~~~-------------~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS-----------------PKQT-------------ECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESS-----------------CCCC-------------SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcC-----------------eeEC-------------CCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 346789999999876 3444 8999999999999995 56689999999875
Q ss_pred CC
Q 013396 104 KD 105 (444)
Q Consensus 104 k~ 105 (444)
.+
T Consensus 63 ~~ 64 (66)
T 2ecy_A 63 DK 64 (66)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 28
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.15 E-value=4.9e-11 Score=99.62 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=54.6
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLK 104 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k 104 (444)
..+..|+||++.|.+ ||++ +|||.||+.||.+|+.....||+|++++...
T Consensus 27 p~~~~CpI~~~~m~d-----------------PV~~-------------~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-----------------PVRL-------------PSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSS-----------------EEEE-------------TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccC-----------------CeEC-------------CCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 457889999999998 8999 8999999999999999888999999999887
Q ss_pred CCCccchHHHH-HHHHH
Q 013396 105 DPTRFCVNFAA-RNYLR 120 (444)
Q Consensus 105 ~~~~~~~~~av-r~~lR 120 (444)
+..++..+... ..+..
T Consensus 77 ~L~pn~~Lk~~I~~~~~ 93 (100)
T 2kre_A 77 MLEPVPELKEQIQAWMR 93 (100)
T ss_dssp SSEECHHHHHHHHHHHH
T ss_pred hceECHHHHHHHHHHHH
Confidence 76666555444 34443
No 29
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.15 E-value=1.4e-11 Score=93.34 Aligned_cols=49 Identities=33% Similarity=0.862 Sum_probs=41.0
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
.+..|+||++.|.+. ++++ +|||.||..||.+|++....||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~~~----------------~~~~-------------~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY----------------SMAL-------------PCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC----------------EEET-------------TTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC----------------cEec-------------CCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 467899999998651 2334 899999999999999988999999998753
No 30
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.15 E-value=6e-11 Score=98.76 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=55.2
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCC-ChhcHHHHHHHhccCCCCCCcccCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCR-HEFHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~Cg-H~FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
..+..|+||++.|.+ ||++ +|| |.||+.||.+||.....||+||+++..
T Consensus 20 p~~~~CpI~~~~m~d-----------------PV~~-------------~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-----------------PVVL-------------PSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS-----------------EEEC-------------TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC-----------------CeEC-------------CCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 457889999999998 8888 899 999999999999888899999999988
Q ss_pred CCCCccchHHHH-HHHHHh
Q 013396 104 KDPTRFCVNFAA-RNYLRR 121 (444)
Q Consensus 104 k~~~~~~~~~av-r~~lR~ 121 (444)
.+..++..+..+ ..+++.
T Consensus 70 ~~L~pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 70 DQIRPNTELKEKIQRWLAE 88 (98)
T ss_dssp TTSEECHHHHHHHHHHHHH
T ss_pred hhceEcHHHHHHHHHHHHH
Confidence 777666555544 444443
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.14 E-value=3.9e-11 Score=101.55 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=45.4
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCC-CCCCcccCCCC-C
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSS-QCPMCWQPISL-K 104 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~ss-sCP~CRq~i~~-k 104 (444)
+..|+||++.|.+ ||++ +|||.||..||..|+.... .||+||+.+.. .
T Consensus 52 ~~~C~IC~~~~~~-----------------p~~~-------------~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 101 (124)
T 3fl2_A 52 TFQCICCQELVFR-----------------PITT-------------VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSY 101 (124)
T ss_dssp HTBCTTTSSBCSS-----------------EEEC-------------TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTC
T ss_pred CCCCCcCChHHcC-----------------cEEe-------------eCCCcccHHHHHHHHhHCcCCCCCCCccCCCCC
Confidence 5689999999886 7777 8999999999999998544 89999999976 3
Q ss_pred CCCccchHH
Q 013396 105 DPTRFCVNF 113 (444)
Q Consensus 105 ~~~~~~~~~ 113 (444)
....+..+.
T Consensus 102 ~~~~n~~l~ 110 (124)
T 3fl2_A 102 AMQVNQPLQ 110 (124)
T ss_dssp CCCCCHHHH
T ss_pred CCCCCHHHH
Confidence 434443333
No 32
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.13 E-value=3.8e-11 Score=96.99 Aligned_cols=61 Identities=11% Similarity=-0.063 Sum_probs=51.7
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLK 104 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k 104 (444)
..+..|+||++.|.+ ||++ +|||.||+.||.+|+.....||+|++.+...
T Consensus 12 p~~~~CpI~~~~m~d-----------------PV~~-------------~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-----------------PVRL-------------PSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSS-----------------EEEC-------------TTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcC-----------------CeEC-------------CCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 347789999999998 8888 8999999999999999888999999999877
Q ss_pred CCCccchHHHH
Q 013396 105 DPTRFCVNFAA 115 (444)
Q Consensus 105 ~~~~~~~~~av 115 (444)
+..++..+..+
T Consensus 62 ~l~pn~~L~~~ 72 (85)
T 2kr4_A 62 MLEPVPELKEQ 72 (85)
T ss_dssp GCEECHHHHHH
T ss_pred hcchHHHHHHH
Confidence 66666554443
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3e-11 Score=93.89 Aligned_cols=52 Identities=27% Similarity=0.631 Sum_probs=43.2
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc------CCCCCCcc
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR------SSQCPMCW 98 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~------sssCP~CR 98 (444)
..+..|+||++.|.+ |++| +|||.||..||..|+.. ...||+||
T Consensus 17 ~~~~~C~IC~~~~~~-----------------p~~~-------------~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr 66 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ-----------------PLSL-------------DCGHSFCQACLTANHKKSMLDKGESSCPVCR 66 (85)
T ss_dssp CCCCCCTTTCSCCSS-----------------CBCC-------------SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTC
T ss_pred cCCCCCCCCCcccCC-----------------ceeC-------------CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCC
Confidence 346789999999876 4444 89999999999999977 67899999
Q ss_pred cCCCCCCC
Q 013396 99 QPISLKDP 106 (444)
Q Consensus 99 q~i~~k~~ 106 (444)
+.+...+.
T Consensus 67 ~~~~~~~~ 74 (85)
T 2ecv_A 67 ISYQPENI 74 (85)
T ss_dssp CSSCSSSC
T ss_pred CccCHHhc
Confidence 99876543
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.12 E-value=1e-11 Score=96.29 Aligned_cols=51 Identities=27% Similarity=0.630 Sum_probs=42.3
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc-------CCCCCCc
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR-------SSQCPMC 97 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~-------sssCP~C 97 (444)
.++..|+||++.|.+ ||+| +|||.||..||.+|++. ...||+|
T Consensus 10 ~~~~~C~IC~~~~~~-----------------p~~l-------------~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~C 59 (79)
T 2egp_A 10 QEEVTCPICLELLTE-----------------PLSL-------------DCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59 (79)
T ss_dssp CCCCEETTTTEECSS-----------------CCCC-------------SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSS
T ss_pred ccCCCCcCCCcccCC-----------------eeEC-------------CCCCHHHHHHHHHHHHhcccCCCCCCcCCCC
Confidence 346789999999876 4445 89999999999999976 5689999
Q ss_pred ccCCCCCC
Q 013396 98 WQPISLKD 105 (444)
Q Consensus 98 Rq~i~~k~ 105 (444)
|+.+...+
T Consensus 60 r~~~~~~~ 67 (79)
T 2egp_A 60 GISYSFEH 67 (79)
T ss_dssp CCCCCSSG
T ss_pred CCcCCHhh
Confidence 99987643
No 35
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.5e-11 Score=93.99 Aligned_cols=51 Identities=29% Similarity=0.839 Sum_probs=42.7
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCC
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
..++..|+||++.|.+ +++ +|||.||..||.+|++....||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~------------------~~~-------------~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD------------------LIL-------------PCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS------------------EEE-------------TTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC------------------ccc-------------CCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 3456789999998765 233 899999999999999998999999999875
Q ss_pred CC
Q 013396 104 KD 105 (444)
Q Consensus 104 k~ 105 (444)
.+
T Consensus 61 ~~ 62 (70)
T 2ecn_A 61 AN 62 (70)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.09 E-value=7.3e-11 Score=97.66 Aligned_cols=49 Identities=24% Similarity=0.612 Sum_probs=42.7
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLK 104 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k 104 (444)
+..|+||++.|.+ ||++. +|||.||..||..|++....||+||..+...
T Consensus 15 ~~~C~IC~~~~~~-----------------p~~~~------------~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFID-----------------ATTII------------ECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCSS-----------------EEEET------------TTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCCccCChHHhC-----------------cCEeC------------CCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 6689999999876 55542 7999999999999999989999999998765
No 37
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=5.7e-11 Score=96.09 Aligned_cols=58 Identities=26% Similarity=0.592 Sum_probs=44.9
Q ss_pred CCCCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCC-----ChhcHHHHHHHhccC--CC
Q 013396 21 GIQDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCR-----HEFHLQCVLEWCQRS--SQ 93 (444)
Q Consensus 21 ~iqd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~Cg-----H~FH~~CI~~Wlk~s--ss 93 (444)
...+.+++.|.||++.|.+++ ++++ +|+ |.||..||.+|+..+ ..
T Consensus 9 s~~~~~~~~C~IC~~~~~~~~---------------~l~~-------------pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~ 60 (80)
T 2d8s_A 9 SITPSSQDICRICHCEGDDES---------------PLIT-------------PCHCTGSLHFVHQACLQQWIKSSDTRC 60 (80)
T ss_dssp CCCCTTSCCCSSSCCCCCSSS---------------CEEC-------------SSSCCSSSCCEETTHHHHHHHHHCCSB
T ss_pred CCCCCCCCCCeEcCccccCCC---------------eeEe-------------ccccCCcCCeeCHHHHHHHHhhCCCCC
Confidence 334556789999999987643 2233 786 999999999999775 48
Q ss_pred CCCcccCCCCCCC
Q 013396 94 CPMCWQPISLKDP 106 (444)
Q Consensus 94 CP~CRq~i~~k~~ 106 (444)
||+||..+.....
T Consensus 61 CplCr~~~~~~~~ 73 (80)
T 2d8s_A 61 CELCKYEFIMETK 73 (80)
T ss_dssp CSSSCCBCCCCCC
T ss_pred CCCCCCeeecCcc
Confidence 9999999876654
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.07 E-value=4.1e-11 Score=99.82 Aligned_cols=59 Identities=25% Similarity=0.528 Sum_probs=45.3
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLK 104 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k 104 (444)
.++..|+||++.|.+.... ...+|++ +|||.||..||.+|++....||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~----------~~~~~~~-------------~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQN----------GRLIVST-------------ECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHT----------TCCEEEE-------------TTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCcccc----------ccCeEec-------------CCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 4577899999998762000 0013555 8999999999999999999999999998765
Q ss_pred CC
Q 013396 105 DP 106 (444)
Q Consensus 105 ~~ 106 (444)
..
T Consensus 62 ~l 63 (133)
T 4ap4_A 62 RY 63 (133)
T ss_dssp CE
T ss_pred cc
Confidence 53
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.06 E-value=1.3e-10 Score=103.02 Aligned_cols=58 Identities=17% Similarity=0.297 Sum_probs=46.6
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCC-CCCCcccCCCCC-
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSS-QCPMCWQPISLK- 104 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~ss-sCP~CRq~i~~k- 104 (444)
+..|+||++.|.+ ||+| +|||.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~~-----------------pv~~-------------~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 127 (150)
T 1z6u_A 78 SFMCVCCQELVYQ-----------------PVTT-------------ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNY 127 (150)
T ss_dssp HTBCTTTSSBCSS-----------------EEEC-------------TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTC
T ss_pred CCEeecCChhhcC-----------------CEEc-------------CCCCchhHHHHHHHHHhCCCcCCCCCccCCCCC
Confidence 5789999999876 6777 8999999999999998754 899999999876
Q ss_pred CCCccchHHH
Q 013396 105 DPTRFCVNFA 114 (444)
Q Consensus 105 ~~~~~~~~~a 114 (444)
....+..+..
T Consensus 128 ~l~~n~~l~~ 137 (150)
T 1z6u_A 128 IMIPNEILQT 137 (150)
T ss_dssp CCCBCHHHHH
T ss_pred CCCCCHHHHH
Confidence 4444433333
No 40
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=9.1e-11 Score=88.05 Aligned_cols=43 Identities=30% Similarity=0.807 Sum_probs=36.7
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhc---cCCCCCCc
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQ---RSSQCPMC 97 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk---~sssCP~C 97 (444)
.++..|+||++.|.+ ||+| +|||.||..||.+|++ ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~-----------------p~~~-------------~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK-----------------PVTI-------------DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS-----------------CEEC-------------TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC-----------------eEEe-------------CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 447789999999876 5666 8999999999999997 34589998
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=6.6e-11 Score=97.25 Aligned_cols=52 Identities=31% Similarity=0.632 Sum_probs=42.6
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCC---CCCCcccCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSS---QCPMCWQPISL 103 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~ss---sCP~CRq~i~~ 103 (444)
+..|+||++.|.+ ||++ +|||.||..||..|+.... .||+||..+..
T Consensus 21 ~~~C~IC~~~~~~-----------------p~~~-------------~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKE-----------------PVST-------------KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSS-----------------CCBC-------------TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcC-----------------eEEC-------------CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4589999999876 4445 8999999999999998653 89999999887
Q ss_pred CCCCc
Q 013396 104 KDPTR 108 (444)
Q Consensus 104 k~~~~ 108 (444)
.+...
T Consensus 71 ~~~~~ 75 (112)
T 1jm7_A 71 RSLQE 75 (112)
T ss_dssp TTCBC
T ss_pred hhcCc
Confidence 65443
No 42
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.03 E-value=1.7e-10 Score=106.90 Aligned_cols=63 Identities=13% Similarity=0.037 Sum_probs=51.4
Q ss_pred CCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC-CCCCCcccCC
Q 013396 23 QDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS-SQCPMCWQPI 101 (444)
Q Consensus 23 qd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s-ssCP~CRq~i 101 (444)
....+..|+||++.|.+ ||++ +|||.||..||.+|+... ..||+||.++
T Consensus 204 ~~~~~~~c~i~~~~~~d-----------------Pv~~-------------~~gh~f~~~~i~~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE-----------------PCIT-------------PSGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp CCCSTTBCTTTCSBCSS-----------------EEEC-------------SSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred CCCcccCCcCcCCHhcC-----------------CeEC-------------CCCCEECHHHHHHHHHHCCCCCcCCCCCC
Confidence 34567889999999988 8888 899999999999999764 4599999999
Q ss_pred CCCCCCccchHHHH
Q 013396 102 SLKDPTRFCVNFAA 115 (444)
Q Consensus 102 ~~k~~~~~~~~~av 115 (444)
...+..++..+..+
T Consensus 254 ~~~~l~~n~~l~~~ 267 (281)
T 2c2l_A 254 TQEQLIPNLAMKEV 267 (281)
T ss_dssp CGGGCEECHHHHHH
T ss_pred chhcCcccHHHHHH
Confidence 87766666555444
No 43
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2e-10 Score=84.13 Aligned_cols=43 Identities=37% Similarity=1.032 Sum_probs=35.4
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhc---cCCCCCCc
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQ---RSSQCPMC 97 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk---~sssCP~C 97 (444)
.++..|+||++.|.+ ||+| +|||.||..||.+|+. ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~-----------------p~~~-------------~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE-----------------PVII-------------ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS-----------------CCCC-------------SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc-----------------cEeC-------------CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 346789999999876 3444 8999999999999964 45689998
No 44
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=2.9e-10 Score=93.08 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=48.6
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCC-CCChhcHHHHHHHhccC------CCCCC-
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTS-CRHEFHLQCVLEWCQRS------SQCPM- 96 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~-CgH~FH~~CI~~Wlk~s------ssCP~- 96 (444)
..+..|+||++.|.+ ||++ + |||.||+.||.+||... ..||+
T Consensus 5 ~~~~~CPI~~~~~~d-----------------PV~~-------------~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~t 54 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK-----------------PVKN-------------KVCGHTYEEDAIVRMIESRQKRKKKAYCPQI 54 (94)
T ss_dssp SSCCBCTTTCSBCSS-----------------EEEE-------------SSSCCEEEHHHHHHHHHHHHTTTCCBCCCST
T ss_pred CcEeECcCcCchhcC-----------------CEEc-------------CCCCCeecHHHHHHHHHHccCcCCCCCCCcC
Confidence 346789999999988 8888 5 99999999999999753 48999
Q ss_pred -cccC-CCCCCCCccchHHHH
Q 013396 97 -CWQP-ISLKDPTRFCVNFAA 115 (444)
Q Consensus 97 -CRq~-i~~k~~~~~~~~~av 115 (444)
|+.. +...+..++..+..+
T Consensus 55 gc~~~~l~~~~L~pn~~L~~~ 75 (94)
T 2yu4_A 55 GCSHTDIRKSDLIQDEALRRA 75 (94)
T ss_dssp TCCCCCBCGGGEEECHHHHHH
T ss_pred cCcccccCHhhCcCCHHHHHH
Confidence 9877 666666565555544
No 45
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=1.9e-10 Score=86.98 Aligned_cols=55 Identities=22% Similarity=0.544 Sum_probs=41.7
Q ss_pred CCCccccccc-CCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc-CCCCCCcccCCCC
Q 013396 26 CDDACSICLE-PFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR-SSQCPMCWQPISL 103 (444)
Q Consensus 26 ~Dd~CsICLE-~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~-sssCP~CRq~i~~ 103 (444)
++..|+||++ .|.+... .+|++ +|||.||..||.+|+.. ...||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~-------------~~~~~-------------~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSL-------------KLMVN-------------VCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSC-------------CEEEC-------------TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCcc-------------CeecC-------------CCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3678999999 7766321 12334 89999999999999755 4689999999876
Q ss_pred CCC
Q 013396 104 KDP 106 (444)
Q Consensus 104 k~~ 106 (444)
.+.
T Consensus 56 ~~~ 58 (65)
T 1g25_A 56 SNF 58 (65)
T ss_dssp CCC
T ss_pred ccc
Confidence 553
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.96 E-value=2.3e-10 Score=96.42 Aligned_cols=50 Identities=22% Similarity=0.561 Sum_probs=42.7
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCC-CCCCcccCCCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSS-QCPMCWQPISLK 104 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~ss-sCP~CRq~i~~k 104 (444)
.+..|+||++.|.+ ||++ +|||.||..||.+|++... .||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~-----------------p~~~-------------~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 17 SKYECPICLMALRE-----------------AVQT-------------PCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GGGBCTTTCSBCSS-----------------EEEC-------------TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCcCChhhcC-----------------eEEC-------------CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 35789999999876 6666 8999999999999998765 899999998764
Q ss_pred C
Q 013396 105 D 105 (444)
Q Consensus 105 ~ 105 (444)
.
T Consensus 67 ~ 67 (118)
T 3hct_A 67 Q 67 (118)
T ss_dssp G
T ss_pred h
Confidence 4
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.96 E-value=3e-10 Score=100.43 Aligned_cols=49 Identities=24% Similarity=0.722 Sum_probs=40.8
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc-CCCCCCcccCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR-SSQCPMCWQPISLK 104 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~-sssCP~CRq~i~~k 104 (444)
+..|+||++.|.+ ||++. +|||.||..||.+|+.. ...||+||..+...
T Consensus 54 ~~~C~IC~~~~~~-----------------p~~~~------------~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 54 ELMCPICLDMLKN-----------------TMTTK------------ECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHBCTTTSSBCSS-----------------EEEET------------TTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCcccChHhhC-----------------cCEeC------------CCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 4589999999886 44442 89999999999999987 67899999998643
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=3.2e-10 Score=95.41 Aligned_cols=58 Identities=26% Similarity=0.473 Sum_probs=45.8
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDP 106 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~~ 106 (444)
+..|+||++.|.+ ||++ .+|||.||..||..|+. ..||+||..+...+.
T Consensus 22 ~~~C~IC~~~~~~-----------------pv~~------------~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 22 LLRCSRCTNILRE-----------------PVCL------------GGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDL 70 (117)
T ss_dssp TTSCSSSCSCCSS-----------------CBCC------------CSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSC
T ss_pred CCCCCCCChHhhC-----------------ccEe------------CCCCCHHHHHHHHHHhc--CCCcCCCCcCccccc
Confidence 6789999999876 3333 27999999999999998 789999999976665
Q ss_pred CccchHHHH
Q 013396 107 TRFCVNFAA 115 (444)
Q Consensus 107 ~~~~~~~av 115 (444)
..+..+..+
T Consensus 71 ~~n~~l~~l 79 (117)
T 1jm7_B 71 KINRQLDSM 79 (117)
T ss_dssp CCCHHHHHH
T ss_pred cccHHHHHH
Confidence 555544444
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.94 E-value=1.1e-10 Score=97.48 Aligned_cols=48 Identities=29% Similarity=0.688 Sum_probs=41.3
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc-CCCCCCcccCCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR-SSQCPMCWQPISL 103 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~-sssCP~CRq~i~~ 103 (444)
++..|+||++.|.+ ||+| +|||.||..||..|+.. ...||+||+.+..
T Consensus 14 ~~~~C~iC~~~~~~-----------------p~~~-------------~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE-----------------PVTL-------------PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS-----------------CEEC-------------TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc-----------------eeEc-------------CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 36789999999876 6667 89999999999999976 5689999998853
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.93 E-value=4.6e-10 Score=93.75 Aligned_cols=50 Identities=34% Similarity=0.622 Sum_probs=43.2
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc-CCCCCCcccCCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR-SSQCPMCWQPISLKD 105 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~-sssCP~CRq~i~~k~ 105 (444)
+..|+||++.|.+ ||++ +|||.||..||.+|+.. ...||+||..+...+
T Consensus 23 ~~~C~IC~~~~~~-----------------p~~~-------------~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILAD-----------------PVET-------------SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSS-----------------EEEC-------------TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcC-----------------cEEc-------------CCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 5689999999876 6666 89999999999999987 678999999987655
Q ss_pred C
Q 013396 106 P 106 (444)
Q Consensus 106 ~ 106 (444)
.
T Consensus 73 ~ 73 (116)
T 1rmd_A 73 L 73 (116)
T ss_dssp C
T ss_pred c
Confidence 3
No 51
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=8.5e-10 Score=88.78 Aligned_cols=52 Identities=25% Similarity=0.592 Sum_probs=41.5
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC--CCCCCcccCCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS--SQCPMCWQPISL 103 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s--ssCP~CRq~i~~ 103 (444)
..+.|+||++.|..+. .. ..|+|.||.+||.+||+++ .+||+||+.|..
T Consensus 14 ~i~~C~IC~~~i~~g~---~C--------------------------~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ---SC--------------------------ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSE---EC--------------------------SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCC---cc--------------------------CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3468999999987421 11 1699999999999999887 789999999976
Q ss_pred CCC
Q 013396 104 KDP 106 (444)
Q Consensus 104 k~~ 106 (444)
..+
T Consensus 65 ~~~ 67 (74)
T 2ct0_A 65 EIP 67 (74)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.89 E-value=3.7e-10 Score=94.06 Aligned_cols=59 Identities=25% Similarity=0.569 Sum_probs=44.2
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCC
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
..++..|+||++.|.+..... ..+|++ +|||.||..||.+|++....||+||..+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~----------~~~~~~-------------~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNG----------RLIVST-------------ECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTT----------CCEEEE-------------TTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccC----------cceEeC-------------CCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 345677999998877521100 113455 899999999999999999999999999875
Q ss_pred CC
Q 013396 104 KD 105 (444)
Q Consensus 104 k~ 105 (444)
.+
T Consensus 126 ~~ 127 (133)
T 4ap4_A 126 KR 127 (133)
T ss_dssp GG
T ss_pred hc
Confidence 54
No 53
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.88 E-value=1.9e-09 Score=86.53 Aligned_cols=55 Identities=20% Similarity=0.456 Sum_probs=40.9
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc-CCCCCCcccCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR-SSQCPMCWQPISL 103 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~-sssCP~CRq~i~~ 103 (444)
.++..|+||++.|...+..... + +|||.||..||.+|++. ...||+||+.+..
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p-------------~-------------~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFP-------------C-------------TCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCS-------------S-------------TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCccccccccc-------------c-------------CCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 4567899999988653321100 1 49999999999998854 5689999999876
Q ss_pred CC
Q 013396 104 KD 105 (444)
Q Consensus 104 k~ 105 (444)
..
T Consensus 63 ~~ 64 (78)
T 1e4u_A 63 DP 64 (78)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=4.5e-10 Score=83.76 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=39.9
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCC
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
+.++..|+||++.|.+ |++| +|||.||..||..| ...||+||+.+..
T Consensus 3 e~~~~~C~IC~~~~~~-----------------p~~l-------------~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKC-----------------PKLL-------------PCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBC-----------------CSCS-------------TTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCC-----------------eEEc-------------CCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 4457789999999876 4455 89999999999884 5579999999876
Q ss_pred CC
Q 013396 104 KD 105 (444)
Q Consensus 104 k~ 105 (444)
..
T Consensus 50 ~~ 51 (56)
T 1bor_A 50 GA 51 (56)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 55
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.79 E-value=3.8e-09 Score=97.46 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=50.9
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC-CCCCCcccCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS-SQCPMCWQPISL 103 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s-ssCP~CRq~i~~ 103 (444)
..+..|+||++.|.+ ||++ +|||.||..||..|+... .+||+|+.++..
T Consensus 104 p~~f~CPI~~elm~D-----------------PV~~-------------~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE-----------------PCIT-------------PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS-----------------EEEC-------------TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC-----------------CeEC-------------CCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 457889999999988 8888 899999999999999764 469999999987
Q ss_pred CCCCccchHHHH
Q 013396 104 KDPTRFCVNFAA 115 (444)
Q Consensus 104 k~~~~~~~~~av 115 (444)
.+..++..+..+
T Consensus 154 ~~L~pN~~Lk~~ 165 (179)
T 2f42_A 154 DQLIPNLAMKEV 165 (179)
T ss_dssp GGCEECHHHHHH
T ss_pred hhCcchHHHHHH
Confidence 776666555444
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.78 E-value=1.4e-09 Score=95.59 Aligned_cols=50 Identities=16% Similarity=0.383 Sum_probs=42.2
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCC-CCCCcccCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSS-QCPMCWQPISL 103 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~ss-sCP~CRq~i~~ 103 (444)
..+..|+||++.|.+ ||.+ +|||.||..||.+|++... .||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~-----------------pv~~-------------~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRR-----------------PFQA-------------QCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSS-----------------EEEC-------------TTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcC-----------------cEEC-------------CCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 346789999999887 6666 8999999999999998654 89999998754
Q ss_pred C
Q 013396 104 K 104 (444)
Q Consensus 104 k 104 (444)
.
T Consensus 79 ~ 79 (141)
T 3knv_A 79 E 79 (141)
T ss_dssp C
T ss_pred c
Confidence 4
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.73 E-value=5.6e-09 Score=106.40 Aligned_cols=48 Identities=31% Similarity=0.650 Sum_probs=41.4
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhc-cCCCCCCcccCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQ-RSSQCPMCWQPISLK 104 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk-~sssCP~CRq~i~~k 104 (444)
+..|+||++.+.+ ||++ +|||.||..||..|+. ....||+||+.+...
T Consensus 332 ~~~C~ICle~~~~-----------------pv~l-------------pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD-----------------VKIE-------------PCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC-----------------EEEE-------------TTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC-----------------eEEe-------------CCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3689999999865 6777 8999999999999998 678999999988643
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.71 E-value=5.3e-09 Score=92.62 Aligned_cols=51 Identities=22% Similarity=0.531 Sum_probs=43.0
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC-CCCCCcccCCCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS-SQCPMCWQPISLK 104 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s-ssCP~CRq~i~~k 104 (444)
++..|+||++.|.+ ||.+ +|||.||..||.+|+... ..||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~-----------------pv~~-------------~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALRE-----------------AVQT-------------PCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSS-----------------EEEC-------------TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcC-----------------cEEC-------------CCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 46789999999877 6666 899999999999999764 4899999998765
Q ss_pred CC
Q 013396 105 DP 106 (444)
Q Consensus 105 ~~ 106 (444)
+.
T Consensus 67 ~~ 68 (170)
T 3hcs_A 67 QL 68 (170)
T ss_dssp GC
T ss_pred hh
Confidence 43
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.69 E-value=6.2e-09 Score=79.91 Aligned_cols=50 Identities=26% Similarity=0.531 Sum_probs=40.2
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCCh-hcHHHHHHHhccCCCCCCcccCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHE-FHLQCVLEWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~-FH~~CI~~Wlk~sssCP~CRq~i~ 102 (444)
.++..|.||++.+.+ +|++ ..+|||. ||..|+..|++....||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~-----------------~~~~-----------~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN-----------------GCIV-----------HGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC-----------------EEEE-----------ETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC-----------------EEEE-----------CCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456789999998765 2221 1279999 899999999998889999999874
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.69 E-value=5e-09 Score=82.11 Aligned_cols=43 Identities=30% Similarity=0.790 Sum_probs=37.6
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCCh-hcHHHHHHHhccCCCCCCcccCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHE-FHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~-FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
+..|.||++.+.+ ||++ +|||. ||..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~~~-----------------~~~~-------------pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA-----------------IVFV-------------PCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC-----------------EEEE-------------TTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC-----------------EEEc-------------CCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 5689999998776 6777 89999 999999999 789999998753
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.62 E-value=1.4e-08 Score=77.73 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=38.9
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCCh-hcHHHHHHHhccCCCCCCcccCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHE-FHLQCVLEWCQRSSQCPMCWQPIS 102 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~-FH~~CI~~Wlk~sssCP~CRq~i~ 102 (444)
+..|.||++.+.+ ++++ ..+|||. ||..|+..|++....||+||+++.
T Consensus 7 ~~~C~IC~~~~~~-----------------~~~~-----------~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRD-----------------GNII-----------HGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSC-----------------EEEE-----------ETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCC-----------------eEEE-----------ecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 5689999998665 2211 2289998 999999999988889999999874
No 62
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.55 E-value=3.1e-08 Score=96.71 Aligned_cols=61 Identities=26% Similarity=0.489 Sum_probs=49.3
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC--CCCCC--cccCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS--SQCPM--CWQPI 101 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s--ssCP~--CRq~i 101 (444)
.+..|+||++.|.+ ||+.. .|||.||+.||..|+... ..||+ |++.+
T Consensus 180 ~el~CPIcl~~f~D-----------------PVts~------------~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l 230 (267)
T 3htk_C 180 IELTCPITCKPYEA-----------------PLISR------------KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV 230 (267)
T ss_dssp CCSBCTTTSSBCSS-----------------EEEES------------SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEE
T ss_pred eeeECcCccCcccC-----------------CeeeC------------CCCCcccHHHHHHHHHhCCCCCCCcccccCcC
Confidence 46789999999988 77642 799999999999999764 47999 99998
Q ss_pred CCCCCCccchHHHH
Q 013396 102 SLKDPTRFCVNFAA 115 (444)
Q Consensus 102 ~~k~~~~~~~~~av 115 (444)
...+..++..+..+
T Consensus 231 ~~~dL~pN~~L~~l 244 (267)
T 3htk_C 231 SMRDFVRDPIMELR 244 (267)
T ss_dssp CGGGEEECHHHHHH
T ss_pred chhhCCcCHHHHHH
Confidence 87777666555443
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=5.8e-08 Score=75.93 Aligned_cols=43 Identities=30% Similarity=0.790 Sum_probs=35.2
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCCh-hcHHHHHHHhccCCCCCCcccCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHE-FHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~-FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
+..|.||++.+.+ ||++ +|||. ||..|+..+ ..||+||+.+..
T Consensus 25 ~~~C~IC~~~~~~-----------------~~~~-------------pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA-----------------IVFV-------------PCGHLVTCKQCAEAV----DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC-----------------BCCS-------------SSCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC-----------------EEEe-------------cCCCHHHHHHHhhCC----CCCccCCceecC
Confidence 4579999998766 4555 89999 999999643 689999998864
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.6e-07 Score=73.20 Aligned_cols=47 Identities=32% Similarity=0.655 Sum_probs=37.8
Q ss_pred CCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCCh-hcHHHHHHHhccCCCCCCcccCC
Q 013396 23 QDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHE-FHLQCVLEWCQRSSQCPMCWQPI 101 (444)
Q Consensus 23 qd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~-FH~~CI~~Wlk~sssCP~CRq~i 101 (444)
.+.++..|.||++.+.+ +|+| +|||. ||..|+.. ...||+||+.+
T Consensus 11 ~~~~~~~C~IC~~~~~~-----------------~v~~-------------pCgH~~~C~~C~~~----~~~CP~CR~~i 56 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVN-----------------WVLL-------------PCRHTCLCDGCVKY----FQQCPMCRQFV 56 (68)
T ss_dssp SCCCSSCCSSSSSSCCC-----------------CEET-------------TTTBCCSCTTHHHH----CSSCTTTCCCC
T ss_pred cCCCCCCCCCcCcCCCC-----------------EEEE-------------CCCChhhhHHHHhc----CCCCCCCCcch
Confidence 34557789999998665 4556 89999 99999984 46899999988
Q ss_pred CC
Q 013396 102 SL 103 (444)
Q Consensus 102 ~~ 103 (444)
..
T Consensus 57 ~~ 58 (68)
T 2ea5_A 57 QE 58 (68)
T ss_dssp CC
T ss_pred hc
Confidence 64
No 65
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.41 E-value=5.6e-08 Score=98.46 Aligned_cols=55 Identities=29% Similarity=0.623 Sum_probs=40.2
Q ss_pred CCCCCcccccccCCCCCC--CCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC----------
Q 013396 24 DACDDACSICLEPFSDSD--PSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS---------- 91 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~--~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s---------- 91 (444)
+.....|+||++.+.++. +...+ ..+.|+|.||..||.+|++..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C------------------------~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi 360 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSC------------------------DNAKCVLKCHAVCLEEWFKTLMDGKTFLEVS 360 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCC------------------------SCTTCCCCBCSGGGHHHHHHHHSSSCTTTCC
T ss_pred ccCCccCcccceeecCCCCCccccc------------------------cCCccCCccchHHHHHHHHhCCCcccccccc
Confidence 345678999999998732 11111 123799999999999999652
Q ss_pred -CCCCCcccCCC
Q 013396 92 -SQCPMCWQPIS 102 (444)
Q Consensus 92 -ssCP~CRq~i~ 102 (444)
..||.||+++.
T Consensus 361 ~G~CPyCr~pIs 372 (381)
T 3k1l_B 361 FGQCPFCKAKLS 372 (381)
T ss_dssp EEECTTTCCEEE
T ss_pred CCCCCCCCCcCC
Confidence 36999999875
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.40 E-value=1.1e-07 Score=73.14 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=43.7
Q ss_pred CcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCCCCCCcccCCCCCCCC
Q 013396 28 DACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDPT 107 (444)
Q Consensus 28 d~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k~~~ 107 (444)
..|+||++.|.+ ||++. +|||.|.+.||.+|++.+..||++++++...+..
T Consensus 4 ~~CpIs~~~m~d-----------------PV~~~------------~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 4 MLCAISGKVPRR-----------------PVLSP------------KSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp CCCTTTCSCCSS-----------------EEEET------------TTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred EEecCCCCCCCC-----------------CEEeC------------CCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence 479999999987 66662 6999999999999998888899999998766643
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.39 E-value=8.2e-08 Score=76.73 Aligned_cols=43 Identities=21% Similarity=0.539 Sum_probs=36.5
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCCh-hcHHHHHHHhccCCCCCCcccCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHE-FHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~-FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
+..|.||++.+.+ +|++ +|||. ||..|+..|. .||+||+.+..
T Consensus 18 ~~~C~IC~~~~~~-----------------~v~~-------------pCgH~~~C~~C~~~~~----~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN-----------------STFC-------------PCGHTVCCESCAAQLQ----SCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC-----------------EEEE-------------TTCBCCBCHHHHTTCS----BCTTTCCBCCE
T ss_pred CCEeEEeCcccCc-----------------EEEE-------------CCCCHHHHHHHHHhcC----cCCCCCchhhC
Confidence 4589999998766 6777 89999 9999999873 89999998753
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.32 E-value=2.7e-07 Score=70.89 Aligned_cols=26 Identities=19% Similarity=0.584 Sum_probs=22.8
Q ss_pred hhcHHHHHHHhcc--CCCCCCcccCCCC
Q 013396 78 EFHLQCVLEWCQR--SSQCPMCWQPISL 103 (444)
Q Consensus 78 ~FH~~CI~~Wlk~--sssCP~CRq~i~~ 103 (444)
.||..||.+|+.. +..||+|+..|..
T Consensus 32 ~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 32 NVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred hhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 9999999999964 5689999998864
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.27 E-value=1.9e-07 Score=93.42 Aligned_cols=44 Identities=25% Similarity=0.667 Sum_probs=38.3
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCCh-hcHHHHHHHhccCCCCCCcccCCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHE-FHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~-FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
++..|+||++.+.+ ||+| +|||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~-----------------~v~l-------------pCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS-----------------VVFI-------------PCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC-----------------EEEE-------------TTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc-----------------eEEc-------------CCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 36789999999876 7778 89999 999999998 689999998753
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.25 E-value=1.3e-07 Score=76.63 Aligned_cols=48 Identities=19% Similarity=0.614 Sum_probs=35.8
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhcc--------CCCCCC-
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQR--------SSQCPM- 96 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~--------sssCP~- 96 (444)
++..|+||++.|.... . +.+.+|||.||..||..|+.. ...||.
T Consensus 4 ~~~~C~IC~~~~~~~~-----------------~----------~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~ 56 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQ-----------------M----------TTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDA 56 (94)
T ss_dssp SBCCCSSSCCCCBGGG-----------------E----------EEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCT
T ss_pred CCcCCcccCccccccc-----------------c----------eEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccc
Confidence 3568999999987522 1 112279999999999999853 137999
Q ss_pred -cccC
Q 013396 97 -CWQP 100 (444)
Q Consensus 97 -CRq~ 100 (444)
|+..
T Consensus 57 ~C~~~ 61 (94)
T 1wim_A 57 ACPKQ 61 (94)
T ss_dssp TCSSC
T ss_pred cCCCC
Confidence 9987
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.62 E-value=3.9e-05 Score=73.14 Aligned_cols=52 Identities=25% Similarity=0.588 Sum_probs=40.5
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccCC--CCCCcccCCCCC
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRSS--QCPMCWQPISLK 104 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~ss--sCP~CRq~i~~k 104 (444)
-..|.||.+.+..+ ..+ +.|+|.||.+|+.+|++... .||.|+..|...
T Consensus 180 i~~C~iC~~iv~~g---~~C--------------------------~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSC--------------------------ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC---EEC--------------------------SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC---ccc--------------------------CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 45799999987753 111 14999999999999997754 899999999766
Q ss_pred CCC
Q 013396 105 DPT 107 (444)
Q Consensus 105 ~~~ 107 (444)
.+.
T Consensus 231 ~~~ 233 (238)
T 3nw0_A 231 IPK 233 (238)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.40 E-value=0.00011 Score=62.70 Aligned_cols=32 Identities=25% Similarity=0.704 Sum_probs=27.2
Q ss_pred CCCCChhcHHHHHHHhcc-CCCCCCcccCCCCC
Q 013396 73 TSCRHEFHLQCVLEWCQR-SSQCPMCWQPISLK 104 (444)
Q Consensus 73 ~~CgH~FH~~CI~~Wlk~-sssCP~CRq~i~~k 104 (444)
-+|+|.||..|+..|.++ ...||+|+.++...
T Consensus 18 IPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 18 IPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp ETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 389999999999999855 67899999987543
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.75 E-value=0.042 Score=44.35 Aligned_cols=15 Identities=13% Similarity=0.434 Sum_probs=13.3
Q ss_pred CCCChhcHHHHHHHh
Q 013396 74 SCRHEFHLQCVLEWC 88 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wl 88 (444)
.|+|.||..|+..|.
T Consensus 23 ~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 23 TCEVSYCDECLKATH 37 (101)
T ss_dssp TTTEEECHHHHHHHS
T ss_pred cCChHHhHHHCHHHh
Confidence 799999999999843
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.71 E-value=0.064 Score=45.65 Aligned_cols=30 Identities=30% Similarity=0.648 Sum_probs=27.0
Q ss_pred CCChhcHHHHHHHhccCCCCCCcccCCCCC
Q 013396 75 CRHEFHLQCVLEWCQRSSQCPMCWQPISLK 104 (444)
Q Consensus 75 CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k 104 (444)
..|.+|+.|+...+..+..||+|+.++..+
T Consensus 45 ~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 45 NNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp SSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 459999999999999999999999987654
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=91.30 E-value=0.19 Score=56.77 Aligned_cols=67 Identities=15% Similarity=0.079 Sum_probs=54.4
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCC-ChhcHHHHHHHhccCCCCCCcccCCCC
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCR-HEFHLQCVLEWCQRSSQCPMCWQPISL 103 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~Cg-H~FH~~CI~~Wlk~sssCP~CRq~i~~ 103 (444)
+++-.|+|-++.+.+ ||++ +.| +.|-+.+|.+|+..+.+||+=|+++..
T Consensus 889 P~~F~cPIs~~lM~D-----------------PVil-------------psG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD-----------------PVIL-------------PASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCSS-----------------EEEC-------------TTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHhC-----------------CeEc-------------CCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 457789999999988 8999 787 689999999999988899999999988
Q ss_pred CCCCccchHHHH-HHHHHh
Q 013396 104 KDPTRFCVNFAA-RNYLRR 121 (444)
Q Consensus 104 k~~~~~~~~~av-r~~lR~ 121 (444)
.+..++..+... ...+..
T Consensus 939 ~~liPN~~Lk~~I~~w~~~ 957 (968)
T 3m62_A 939 EDVTPNEELRQKILCFKKQ 957 (968)
T ss_dssp GGCEECHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHH
Confidence 777776555444 444443
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.06 E-value=0.2 Score=39.17 Aligned_cols=28 Identities=21% Similarity=0.566 Sum_probs=22.4
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCcccCC
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCWQPI 101 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CRq~i 101 (444)
.|...||..|+...+.. .-.||.|....
T Consensus 29 ~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 29 HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 69999999999887754 23799997643
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.66 E-value=0.93 Score=37.92 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=12.8
Q ss_pred CCCChhcHHHHHHH
Q 013396 74 SCRHEFHLQCVLEW 87 (444)
Q Consensus 74 ~CgH~FH~~CI~~W 87 (444)
-|+-.||..|+.+.
T Consensus 34 vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 34 VCTRVFHDGCLRRM 47 (89)
T ss_dssp SSSSCCCHHHHHHH
T ss_pred cccccccHhhcccc
Confidence 49999999999996
No 78
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=83.65 E-value=0.24 Score=44.54 Aligned_cols=28 Identities=25% Similarity=0.567 Sum_probs=21.7
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCcccCC
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCWQPI 101 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CRq~i 101 (444)
.|.-.||..|+...+.. .-.||.|+..-
T Consensus 21 ~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 21 KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 69999999999776543 24799998754
No 79
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=83.11 E-value=0.27 Score=45.22 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=21.7
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCcccCC
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCWQPI 101 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CRq~i 101 (444)
.|...||..|+...+.. .-.||.|+..-
T Consensus 24 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 24 KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 69999999999776643 23799998653
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=80.19 E-value=0.86 Score=34.64 Aligned_cols=26 Identities=23% Similarity=0.714 Sum_probs=20.2
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CRq 99 (444)
.|...||..|+..-+.. .-.||.|..
T Consensus 28 ~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 28 TCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCChhhhhhccCCCCCCCCCCceECccccc
Confidence 69999999999875533 237999965
No 81
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.59 E-value=1.6 Score=36.29 Aligned_cols=25 Identities=36% Similarity=0.683 Sum_probs=18.2
Q ss_pred CC-ChhcHHHHHHHhcc----CCCCCCcccCC
Q 013396 75 CR-HEFHLQCVLEWCQR----SSQCPMCWQPI 101 (444)
Q Consensus 75 Cg-H~FH~~CI~~Wlk~----sssCP~CRq~i 101 (444)
|. ..||..|+. +.. .-.||.|+...
T Consensus 57 C~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 57 CSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 76 789999996 322 33799997654
No 82
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.43 E-value=0.3 Score=36.94 Aligned_cols=50 Identities=22% Similarity=0.446 Sum_probs=32.4
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhc-----cCCCCCCccc
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQ-----RSSQCPMCWQ 99 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk-----~sssCP~CRq 99 (444)
.++..|+||...+.+..... +=-.|...||..|+.--.. ..-.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI--------------------------~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWI--------------------------CCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEE--------------------------ECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEE--------------------------EccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 45677999998875432111 1116999999999864321 2347999976
Q ss_pred C
Q 013396 100 P 100 (444)
Q Consensus 100 ~ 100 (444)
.
T Consensus 58 k 58 (64)
T 1we9_A 58 K 58 (64)
T ss_dssp T
T ss_pred c
Confidence 4
No 83
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=77.28 E-value=0.98 Score=40.37 Aligned_cols=26 Identities=23% Similarity=0.582 Sum_probs=20.2
Q ss_pred CCCChhcHHHHHHHhc-----------cCCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQ-----------RSSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk-----------~sssCP~CRq 99 (444)
.|...||..||..-+. ..-.||+|+.
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 6999999999996552 1237999964
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=76.77 E-value=0.79 Score=38.05 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=18.7
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCcc
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCW 98 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CR 98 (444)
.|+..||..||...+.. .-.||.|+
T Consensus 27 ~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 27 TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcChHHhCCccccccccCccCCcCC
Confidence 79999999999876642 23677764
No 85
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=76.22 E-value=0.45 Score=36.61 Aligned_cols=28 Identities=29% Similarity=0.689 Sum_probs=20.4
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCcccCC
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCWQPI 101 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CRq~i 101 (444)
.|.-.||..|+..-+.. .-.||.|...-
T Consensus 25 ~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 25 GCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 69999999999854432 23699996543
No 86
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=75.37 E-value=0.81 Score=34.77 Aligned_cols=27 Identities=26% Similarity=0.699 Sum_probs=20.3
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCcccC
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCWQP 100 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CRq~ 100 (444)
.|...||..|+..-+.. .-.||.|...
T Consensus 26 ~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 26 TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 69999999999864433 2369999764
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=71.02 E-value=0.8 Score=35.63 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=21.1
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCcccCCC
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCWQPIS 102 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CRq~i~ 102 (444)
.|.-.||..|+..-... .-.||.|+..+.
T Consensus 38 ~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 38 DCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 69999999999754432 347999976543
No 88
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=70.36 E-value=3 Score=32.82 Aligned_cols=25 Identities=36% Similarity=0.683 Sum_probs=18.3
Q ss_pred CC-ChhcHHHHHHHhcc----CCCCCCcccCC
Q 013396 75 CR-HEFHLQCVLEWCQR----SSQCPMCWQPI 101 (444)
Q Consensus 75 Cg-H~FH~~CI~~Wlk~----sssCP~CRq~i 101 (444)
|. ..||..|+. +.. .-.||.|+..-
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 77 699999997 322 23799997654
No 89
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=70.04 E-value=2 Score=35.53 Aligned_cols=31 Identities=35% Similarity=0.656 Sum_probs=22.7
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCcccCCCCC
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCWQPISLK 104 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CRq~i~~k 104 (444)
.|.-.||..|+..=+.. .-.||.|...-..+
T Consensus 42 ~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~k 76 (88)
T 1fp0_A 42 QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLK 76 (88)
T ss_dssp TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSC
T ss_pred CCCCceecccCCCCCCCCcCCCcCCccccCCCccc
Confidence 69999999999765543 23799998654443
No 90
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=66.42 E-value=1.7 Score=40.06 Aligned_cols=51 Identities=20% Similarity=0.408 Sum_probs=32.6
Q ss_pred CcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHH------Hhc-----cCCCCCC
Q 013396 28 DACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLE------WCQ-----RSSQCPM 96 (444)
Q Consensus 28 d~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~------Wlk-----~sssCP~ 96 (444)
..|+||...|.+++... ++ + .=..|...||..|+.- -++ ..-.||.
T Consensus 3 ~~CpiC~k~Y~~~~~~~------------~M-I----------qCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~ 59 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYES------------KM-M----------QCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN 59 (183)
T ss_dssp CBCTTTCCBCTTCCTTC------------CE-E----------ECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT
T ss_pred CcCCCCcCccCCcccCC------------Ce-E----------ECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC
Confidence 36999999988754200 01 1 1116999999999842 111 1458999
Q ss_pred cccCC
Q 013396 97 CWQPI 101 (444)
Q Consensus 97 CRq~i 101 (444)
|+...
T Consensus 60 C~~~~ 64 (183)
T 3lqh_A 60 CTERH 64 (183)
T ss_dssp TCCSS
T ss_pred CCCCC
Confidence 98754
No 91
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=66.25 E-value=4.9 Score=40.99 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=25.1
Q ss_pred CCCCh--hcHHHHHHHhcc--CCCCCCcccCCCCCCCCccc
Q 013396 74 SCRHE--FHLQCVLEWCQR--SSQCPMCWQPISLKDPTRFC 110 (444)
Q Consensus 74 ~CgH~--FH~~CI~~Wlk~--sssCP~CRq~i~~k~~~~~~ 110 (444)
.|.|. |-+.=++.+..+ .-.||+|.+.+...+.....
T Consensus 267 ~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~ 307 (371)
T 3i2d_A 267 NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISE 307 (371)
T ss_dssp TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBH
T ss_pred cCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcH
Confidence 79998 555555555433 34799999988776654443
No 92
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=65.45 E-value=1.5 Score=38.66 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=19.3
Q ss_pred CCCChhcHHHHHHHh-----ccCCCCCCcccC
Q 013396 74 SCRHEFHLQCVLEWC-----QRSSQCPMCWQP 100 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wl-----k~sssCP~CRq~ 100 (444)
.|...||..|+.--. ...-.||.|+..
T Consensus 28 ~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 28 RCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 699999999995211 123479999764
No 93
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=64.92 E-value=12 Score=31.44 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=37.2
Q ss_pred CCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHH-HhccCCCCCCcccCCC
Q 013396 26 CDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLE-WCQRSSQCPMCWQPIS 102 (444)
Q Consensus 26 ~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~-Wlk~sssCP~CRq~i~ 102 (444)
..-.|.||-+.+..... ..+.++-..|+--.|+-|..- +-+.++.||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~-----------------------Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVE-----------------------GDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSS-----------------------SSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCC-----------------------CCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34589999998664321 011122236888999999985 4456789999999986
No 94
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=62.26 E-value=4.1 Score=29.34 Aligned_cols=26 Identities=35% Similarity=0.741 Sum_probs=19.2
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CRq 99 (444)
.|...||..|+..=+.. .-.||.|+.
T Consensus 20 ~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 20 ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 69999999999653332 236999964
No 95
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=61.51 E-value=1.3 Score=33.34 Aligned_cols=27 Identities=26% Similarity=0.635 Sum_probs=19.5
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCcccC
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCWQP 100 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CRq~ 100 (444)
.|.-.||..|+..-+.. .-.||.|...
T Consensus 22 ~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 22 TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp SSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 69999999999854432 2369888543
No 96
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.20 E-value=2.3 Score=33.24 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=20.0
Q ss_pred CCCChhcHHHHHHH---------hccCCCCCCcccCC
Q 013396 74 SCRHEFHLQCVLEW---------CQRSSQCPMCWQPI 101 (444)
Q Consensus 74 ~CgH~FH~~CI~~W---------lk~sssCP~CRq~i 101 (444)
.|...||..|+.-- ....-.||.|+...
T Consensus 35 ~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 35 RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 69999999998421 12356899997643
No 97
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=61.01 E-value=7 Score=39.72 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=25.1
Q ss_pred CCCCh--hcHHHHHHHhcc--CCCCCCcccCCCCCCCCcc
Q 013396 74 SCRHE--FHLQCVLEWCQR--SSQCPMCWQPISLKDPTRF 109 (444)
Q Consensus 74 ~CgH~--FH~~CI~~Wlk~--sssCP~CRq~i~~k~~~~~ 109 (444)
.|.|. |-..=+..+..+ .-.||+|.+.+...+....
T Consensus 233 ~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID 272 (360)
T 4fo9_A 233 TCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILD 272 (360)
T ss_dssp TCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEB
T ss_pred CCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEc
Confidence 79999 666656665543 3479999998876664443
No 98
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=60.24 E-value=8.3 Score=32.20 Aligned_cols=36 Identities=28% Similarity=0.582 Sum_probs=27.8
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCC----CChhcHHHHHHHhcc
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSC----RHEFHLQCVLEWCQR 90 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~C----gH~FH~~CI~~Wlk~ 90 (444)
.....|.+|.|.+.+..-+ +| +|.||.-|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFV------------------------------QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV------------------------------QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE------------------------------ECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCcee------------------------------eCCCccCCeeeccccHHHHHh
Confidence 3456899999999885421 34 599999999998865
No 99
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.12 E-value=0.87 Score=33.85 Aligned_cols=26 Identities=27% Similarity=0.662 Sum_probs=18.8
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CRq 99 (444)
.|...||..|+..-+.. .-.||.|..
T Consensus 26 ~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 26 TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 69999999999864433 236888853
No 100
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=59.25 E-value=7.8 Score=34.06 Aligned_cols=26 Identities=23% Similarity=0.595 Sum_probs=19.4
Q ss_pred CCCChhcHHHHHHHh------c-----cCCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWC------Q-----RSSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wl------k-----~sssCP~CRq 99 (444)
.|...||..||..-+ + ..-.|++|+-
T Consensus 74 ~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 74 FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 699999999999642 1 1247999943
No 101
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.13 E-value=0.87 Score=37.40 Aligned_cols=26 Identities=27% Similarity=0.729 Sum_probs=18.5
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CRq 99 (444)
.|...||..|+..=+.. .-.||.|..
T Consensus 36 ~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 36 GCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp TTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 69999999999743322 236999954
No 102
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=56.17 E-value=3.2 Score=34.28 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=18.9
Q ss_pred CCCChhcHHHHHHHhcc---CCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQR---SSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~---sssCP~CRq 99 (444)
.|.-.||..|+..=... .-.||.|+.
T Consensus 47 ~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 47 KCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp TTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 69999999998642222 237999964
No 103
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.80 E-value=9.1 Score=30.09 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=20.0
Q ss_pred CCCChhcHHHHHHHh---c--cCCCCCCcccCC
Q 013396 74 SCRHEFHLQCVLEWC---Q--RSSQCPMCWQPI 101 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wl---k--~sssCP~CRq~i 101 (444)
.|...||..|+.--. . ..-.||.|+...
T Consensus 32 ~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 32 LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 599999999995221 1 234799998754
No 104
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=53.75 E-value=4.2 Score=37.09 Aligned_cols=28 Identities=32% Similarity=0.635 Sum_probs=20.9
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCcccCC
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCWQPI 101 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CRq~i 101 (444)
.|...||..|+..=+.. .-.||.|+..-
T Consensus 19 ~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 19 QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 69999999999754432 23799998653
No 105
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.42 E-value=2.9 Score=33.42 Aligned_cols=26 Identities=23% Similarity=0.614 Sum_probs=19.3
Q ss_pred CCCChhcHHHHHHHhcc-----CCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQR-----SSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~-----sssCP~CRq 99 (444)
.|...||..|+..=+.. .-.||.|..
T Consensus 46 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 46 ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 69999999999854432 236999964
No 106
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=46.76 E-value=3.3 Score=33.75 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=21.3
Q ss_pred CCCChhcHHHHHHHh--ccCCCCCCcccCCCCC
Q 013396 74 SCRHEFHLQCVLEWC--QRSSQCPMCWQPISLK 104 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wl--k~sssCP~CRq~i~~k 104 (444)
.|.-.||..|+..-. ...-.||.|......+
T Consensus 47 ~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 47 MCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp SSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCchhhcccCCCCccCCCceECccccCccchh
Confidence 699999999997432 1233699997654433
No 107
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=46.50 E-value=9.1 Score=29.56 Aligned_cols=36 Identities=25% Similarity=0.509 Sum_probs=22.6
Q ss_pred CCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHH
Q 013396 25 ACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVL 85 (444)
Q Consensus 25 ~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~ 85 (444)
.....|.+|..++.+....... + +.|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~C------------------D-------~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILC------------------E-------ASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEB------------------T-------TTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEec------------------c-------cCccccCchhccC
Confidence 3456799999998764321111 0 1599999999984
No 108
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=45.83 E-value=5.4 Score=30.02 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=20.1
Q ss_pred CCCChhcHHHHHHHhc-------cCCCCCCcccCC
Q 013396 74 SCRHEFHLQCVLEWCQ-------RSSQCPMCWQPI 101 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk-------~sssCP~CRq~i 101 (444)
.|.-.||..|+..-+. ..-.||.|....
T Consensus 28 ~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 28 KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 7999999999875432 234799996543
No 109
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=45.13 E-value=6.3 Score=32.95 Aligned_cols=26 Identities=31% Similarity=0.677 Sum_probs=20.0
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CRq 99 (444)
.|...||..|+..-+.. .-.||.|+.
T Consensus 82 ~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 82 SCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 69999999999765543 237999975
No 110
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=44.78 E-value=6.8 Score=30.86 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=19.7
Q ss_pred CCCChhcHHHHHHHhc---------cCCCCCCcccCC
Q 013396 74 SCRHEFHLQCVLEWCQ---------RSSQCPMCWQPI 101 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk---------~sssCP~CRq~i 101 (444)
.|...||..|+.---. ....||.|+..-
T Consensus 37 ~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 37 RCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp TTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred cCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 5999999999953211 234799997653
No 111
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=43.47 E-value=4.1 Score=38.95 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=17.4
Q ss_pred CCCChhcHHHHHHHhcc-----CCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQR-----SSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~-----sssCP~CRq 99 (444)
.|...||..|+..=+.. .-.||.|..
T Consensus 194 ~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 194 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 69999999999854432 236999965
No 112
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=42.49 E-value=25 Score=29.24 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=17.4
Q ss_pred CCCChhcHHHHHH------Hh-ccCCCCCCcc
Q 013396 74 SCRHEFHLQCVLE------WC-QRSSQCPMCW 98 (444)
Q Consensus 74 ~CgH~FH~~CI~~------Wl-k~sssCP~CR 98 (444)
.|+..||..||.. .+ ...-.||.|+
T Consensus 31 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 31 DCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 6999999999952 22 2234677775
No 113
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=40.11 E-value=2.6 Score=32.35 Aligned_cols=23 Identities=35% Similarity=0.769 Sum_probs=16.5
Q ss_pred CC-ChhcHHHHHHHhcc----CCCCCCccc
Q 013396 75 CR-HEFHLQCVLEWCQR----SSQCPMCWQ 99 (444)
Q Consensus 75 Cg-H~FH~~CI~~Wlk~----sssCP~CRq 99 (444)
|. ..||..|+. +.. .-.||.|+.
T Consensus 32 C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 32 CPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcccEecccCC--cCcCCCCCEECcCccc
Confidence 66 899999997 222 236999965
No 114
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=40.03 E-value=9.7 Score=31.82 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=19.4
Q ss_pred CCCChhcHHHHHHH------h----ccCCCCCCcccCC
Q 013396 74 SCRHEFHLQCVLEW------C----QRSSQCPMCWQPI 101 (444)
Q Consensus 74 ~CgH~FH~~CI~~W------l----k~sssCP~CRq~i 101 (444)
.|.-.||..|+.-= + ...-.||.|+...
T Consensus 25 ~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 25 SCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp TTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 59999999998411 1 0234799998754
No 115
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.00 E-value=1.8 Score=35.24 Aligned_cols=29 Identities=17% Similarity=0.450 Sum_probs=21.3
Q ss_pred CCCChhcHHHHHHHhc--------cCCCCCCcccCCC
Q 013396 74 SCRHEFHLQCVLEWCQ--------RSSQCPMCWQPIS 102 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk--------~sssCP~CRq~i~ 102 (444)
.|...||..|+..-+. ..-.|+.|+....
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 38 ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 6999999999986543 1347999965443
No 116
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=37.96 E-value=11 Score=28.99 Aligned_cols=24 Identities=25% Similarity=0.667 Sum_probs=18.2
Q ss_pred CCCChhcHHHHHHHhccCCCCCCc
Q 013396 74 SCRHEFHLQCVLEWCQRSSQCPMC 97 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssCP~C 97 (444)
.|++.||.+|=.=--+.-..||-|
T Consensus 35 ~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 35 VCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp TTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred ccCcCcccchhHHHHhhccCCcCC
Confidence 899999999954333444589988
No 117
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=37.67 E-value=2.8 Score=31.76 Aligned_cols=23 Identities=39% Similarity=0.775 Sum_probs=16.4
Q ss_pred CC-ChhcHHHHHHHhcc----CCCCCCccc
Q 013396 75 CR-HEFHLQCVLEWCQR----SSQCPMCWQ 99 (444)
Q Consensus 75 Cg-H~FH~~CI~~Wlk~----sssCP~CRq 99 (444)
|. ..||..|+. +.. .-.||.|+.
T Consensus 31 C~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 31 CSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 66 689999997 432 236998864
No 118
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=36.16 E-value=8 Score=28.23 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=17.1
Q ss_pred CCCChhcHHHHHHHh----ccCCCCCCcc
Q 013396 74 SCRHEFHLQCVLEWC----QRSSQCPMCW 98 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wl----k~sssCP~CR 98 (444)
.|.-.||..|+.--. ...-.||.|+
T Consensus 24 ~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 24 GCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp TTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCccCcccccCCCccccCCCCEECCCCC
Confidence 488999999985211 2445799885
No 119
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=34.21 E-value=5.3 Score=31.16 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=19.5
Q ss_pred CCCChhcHHHHHHHhcc-----CCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQR-----SSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~-----sssCP~CRq 99 (444)
.|...||..|+..=+.. .-.||.|+.
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 69999999999854432 237999975
No 120
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=32.98 E-value=23 Score=28.19 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=25.9
Q ss_pred CCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHH
Q 013396 23 QDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEW 87 (444)
Q Consensus 23 qd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~W 87 (444)
.|.+...|.+|...|..-... | ++. .||++||..|....
T Consensus 17 pd~~~~~C~~C~~~Fs~~~Rr-------H-----------HCR--------~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRR-------H-----------HCR--------NCGYVLCGDCSRHR 55 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCC-------E-----------ECT--------TTCCEECTGGGCCE
T ss_pred cCCCCCCCcCcCCccccchhc-------c-----------ccc--------CCCcEEChHHhCCe
Confidence 444566899999998752110 0 112 69999999997654
No 121
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=32.97 E-value=2.6 Score=32.45 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=17.2
Q ss_pred CCCChhcHHHHHHH---hc-----cCCCCCCccc
Q 013396 74 SCRHEFHLQCVLEW---CQ-----RSSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~W---lk-----~sssCP~CRq 99 (444)
.|...||..|+.-- .. ..-.||.||.
T Consensus 31 ~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 31 RCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp TTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 48999999998321 11 1246999974
No 122
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=32.30 E-value=9.5 Score=37.55 Aligned_cols=27 Identities=15% Similarity=0.374 Sum_probs=0.0
Q ss_pred CCCChhcHHHHHHHhcc-------CCCCCCcccC
Q 013396 74 SCRHEFHLQCVLEWCQR-------SSQCPMCWQP 100 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~-------sssCP~CRq~ 100 (444)
.||+.||..|...++.. ...|-.|-..
T Consensus 396 ~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 396 ACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp ----------------------------------
T ss_pred cCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 69999999999765421 2357666543
No 123
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=31.95 E-value=31 Score=26.97 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=18.2
Q ss_pred CCCChhcHHHHHHHh--ccCCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWC--QRSSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wl--k~sssCP~CRq 99 (444)
.|.-.||..|+..-. +..-.||.|+.
T Consensus 38 ~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 38 MCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCccccccCCCCcCCCCCcCCccCcC
Confidence 699999999997432 12336888854
No 124
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.37 E-value=19 Score=30.86 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=24.5
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHH
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEW 87 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~W 87 (444)
+..-..|.+|...|.....- -++. .||++||..|....
T Consensus 66 d~~~~~C~~C~~~Fs~~~Rr------------------HHCR--------~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRR------------------HHCR--------QCGNIFCAECSAKN 103 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCC------------------EECT--------TTCCEECGGGSCEE
T ss_pred CCCCCCCcCcCCcccccccc------------------ccCC--------CCCeEEChHHhCCc
Confidence 33446799999988742100 0122 69999999996543
No 125
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=30.40 E-value=22 Score=28.11 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=25.2
Q ss_pred CCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHH
Q 013396 23 QDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEW 87 (444)
Q Consensus 23 qd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~W 87 (444)
.|.+-..|.+|...|.....- | ++. .||++||..|....
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~Rr-------H-----------HCR--------~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRK-------H-----------HCR--------NCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCC-------E-----------ECT--------TTCCEECSGGGCEE
T ss_pred cCccCCcccCcCCcccCcccc-------c-----------cCC--------CCCCEEChHHhCCe
Confidence 344456799999998742100 0 111 69999999997643
No 126
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.09 E-value=17 Score=31.20 Aligned_cols=13 Identities=23% Similarity=0.797 Sum_probs=11.1
Q ss_pred hhcHHHHHHHhcc
Q 013396 78 EFHLQCVLEWCQR 90 (444)
Q Consensus 78 ~FH~~CI~~Wlk~ 90 (444)
-||+.||.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999954
No 127
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=29.58 E-value=18 Score=31.07 Aligned_cols=13 Identities=23% Similarity=0.828 Sum_probs=11.1
Q ss_pred hhcHHHHHHHhcc
Q 013396 78 EFHLQCVLEWCQR 90 (444)
Q Consensus 78 ~FH~~CI~~Wlk~ 90 (444)
-||+.||.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999853
No 128
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=29.39 E-value=5.3 Score=30.23 Aligned_cols=23 Identities=39% Similarity=0.781 Sum_probs=16.6
Q ss_pred CC-ChhcHHHHHHHhcc----CCCCCCccc
Q 013396 75 CR-HEFHLQCVLEWCQR----SSQCPMCWQ 99 (444)
Q Consensus 75 Cg-H~FH~~CI~~Wlk~----sssCP~CRq 99 (444)
|. ..||..|+. +.. .-.||.|+.
T Consensus 30 C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 30 CPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEecccCC--cccCCCCCEECcCccC
Confidence 77 699999997 322 236998864
No 129
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=28.31 E-value=24 Score=28.52 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=12.4
Q ss_pred CCCChhcHHHHHHHh
Q 013396 74 SCRHEFHLQCVLEWC 88 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wl 88 (444)
.||++||..|...+.
T Consensus 41 ~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 41 ACGKVFCGVCCNRKC 55 (90)
T ss_dssp TTCCEECGGGSCEEE
T ss_pred CCCCEECCcccCCee
Confidence 699999999976543
No 130
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=28.30 E-value=27 Score=29.17 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=17.2
Q ss_pred CCCChhcHHHHHHHh-------ccCCCCCCcc
Q 013396 74 SCRHEFHLQCVLEWC-------QRSSQCPMCW 98 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wl-------k~sssCP~CR 98 (444)
.|+..||..||..+. +..-.||.|+
T Consensus 28 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 28 DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 699999999986442 1234677663
No 131
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.82 E-value=23 Score=28.13 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=24.5
Q ss_pred CCCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHH
Q 013396 23 QDACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLE 86 (444)
Q Consensus 23 qd~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~ 86 (444)
.|.+-..|.+|...|..-.. +-++. .||.+||..|...
T Consensus 10 pd~~~~~C~~C~~~F~~~~R------------------rHHCR--------~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKK------------------RRSCS--------NCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSC------------------CEECS--------SSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchh------------------hhhhc--------CCCcEEChhhcCC
Confidence 44455689999999864210 00122 6999999999543
No 132
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=26.91 E-value=28 Score=29.44 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=19.7
Q ss_pred CCCChhcHHHHHHHhcc----CCCCCCcccCCCCC
Q 013396 74 SCRHEFHLQCVLEWCQR----SSQCPMCWQPISLK 104 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----sssCP~CRq~i~~k 104 (444)
.|...||..|+. +.. .-.||.|.-.+-.+
T Consensus 34 ~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 34 DCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp TCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 488999999997 433 23688776555433
No 133
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=26.63 E-value=8.1 Score=30.90 Aligned_cols=26 Identities=27% Similarity=0.637 Sum_probs=19.5
Q ss_pred CCCChhcHHHHHHHhcc----C-CCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQR----S-SQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~----s-ssCP~CRq 99 (444)
.|...||..|+..-+.. . -.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 69999999999865533 2 37999975
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.65 E-value=19 Score=33.04 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=23.5
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHH
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEW 87 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~W 87 (444)
+..|.+|...|.--.. +-+++ .||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~r------------------rhhCr--------~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNR------------------KHHCR--------NCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSC------------------CEECT--------TTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCccc------------------ccccC--------CcCCEEChHHhCCe
Confidence 5789999998864210 00122 69999999996543
No 135
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=24.27 E-value=26 Score=31.31 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=30.2
Q ss_pred CCCCCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHHhccC--CCCCCccc
Q 013396 24 DACDDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEWCQRS--SQCPMCWQ 99 (444)
Q Consensus 24 d~~Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~Wlk~s--ssCP~CRq 99 (444)
..++..|.+|...|.--... |+ .=..|+|.+|..|-. |.... -.|=+|..
T Consensus 65 ~~~~~~C~~C~~~fg~l~~~--------------------g~-----~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 65 HLNETHCARCLQPYRLLLNS--------------------RR-----QCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp TGGGTBCTTTCCBGGGCSSC--------------------CE-----ECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred cCCCccchhhcCccccccCC--------------------CC-----cCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 34578999999987632111 10 011699999999972 44322 24777754
No 136
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.26 E-value=25 Score=32.66 Aligned_cols=35 Identities=17% Similarity=0.447 Sum_probs=23.7
Q ss_pred CCcccccccCCCCCCCCcccccccccceeeeeeeccCCccccccccCCCCChhcHHHHHHH
Q 013396 27 DDACSICLEPFSDSDPSTVTSFDFHVRFFRVVILRDLGNFSLLLQLTSCRHEFHLQCVLEW 87 (444)
Q Consensus 27 Dd~CsICLE~F~~~~~~~~~~~~~~~~~~~pViL~~~g~~~~~~~l~~CgH~FH~~CI~~W 87 (444)
+..|.+|...|.--.. +-++. .||++||..|...+
T Consensus 164 ~~~C~~C~~~F~~~~R------------------rhHCR--------~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTR------------------KHHCR--------ACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBC------------------CEECT--------TTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCcccc------------------ccccC--------CCcCEeChhhcCCc
Confidence 5689999998874210 00122 69999999997654
No 137
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=23.94 E-value=40 Score=27.11 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=24.5
Q ss_pred hhhhhhhcchhhHHHHhhhhhcccCCCCC
Q 013396 370 SEVRREDDAGIERVSGMMERLETRDNNSS 398 (444)
Q Consensus 370 ~~~~re~~agi~~v~~m~e~l~~~~~~~~ 398 (444)
|-+||.+.-|-.+.+|+||.||...--++
T Consensus 28 S~lQR~lrIGYnRAArlid~lE~~GiVgp 56 (73)
T 2ve8_A 28 SAVQRKLKIGYNRAARMIEAMEMAGVVTP 56 (73)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSBCC
T ss_pred HHHHHHHccChHHHHHHHHHHHHCCcCCc
Confidence 56799999999999999999997765443
No 138
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=22.93 E-value=12 Score=38.96 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=18.4
Q ss_pred CCCChhcHHHHHHHhc-----cCCCCCCccc
Q 013396 74 SCRHEFHLQCVLEWCQ-----RSSQCPMCWQ 99 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk-----~sssCP~CRq 99 (444)
.|.-.||..|+.---. ..-.||.|+.
T Consensus 57 ~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 57 ICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp TTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 5999999999953221 1247999974
No 139
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=22.06 E-value=23 Score=30.33 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=17.7
Q ss_pred CCCChhcHHHHHHHhccCCCCCCcccCCCCC
Q 013396 74 SCRHEFHLQCVLEWCQRSSQCPMCWQPISLK 104 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssCP~CRq~i~~k 104 (444)
.||+.| ..=+.....||.|+......
T Consensus 72 ~CG~~F-----~~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 72 KCGFVF-----KAEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TTCCBC-----CCCSSCCSSCSSSCCCCBCC
T ss_pred hCcCee-----cccCCCCCCCcCCCCCccCC
Confidence 799999 12224456899998876443
No 140
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=21.85 E-value=40 Score=26.06 Aligned_cols=13 Identities=23% Similarity=0.302 Sum_probs=11.0
Q ss_pred CCCChhcHHHHHH
Q 013396 74 SCRHEFHLQCVLE 86 (444)
Q Consensus 74 ~CgH~FH~~CI~~ 86 (444)
.||++||..|...
T Consensus 32 ~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 32 SCGGVFCQEHSSN 44 (73)
T ss_dssp TTCCEECGGGSCE
T ss_pred CCCEEEcccccCC
Confidence 6999999999643
No 141
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=21.76 E-value=24 Score=29.08 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=15.8
Q ss_pred CC-ChhcHHHHHHHh--ccCCCCCC-ccc
Q 013396 75 CR-HEFHLQCVLEWC--QRSSQCPM-CWQ 99 (444)
Q Consensus 75 Cg-H~FH~~CI~~Wl--k~sssCP~-CRq 99 (444)
|. ..||..|+.-=- ...-.||. |+.
T Consensus 47 C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 47 CPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CccccCcCccCCCCcCCCCCccCChhhcc
Confidence 55 689999995110 11336999 863
No 142
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=21.49 E-value=25 Score=30.73 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=11.6
Q ss_pred CCCCcccccccCCC
Q 013396 25 ACDDACSICLEPFS 38 (444)
Q Consensus 25 ~~Dd~CsICLE~F~ 38 (444)
.++..|.||...|.
T Consensus 53 ~~~~~C~~C~~~~g 66 (134)
T 1zbd_B 53 DGVNRCILCGEQLG 66 (134)
T ss_dssp CSSSBCSSSCCBCS
T ss_pred CCCccccccCCCcc
Confidence 45788999999984
No 143
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=20.59 E-value=9.9 Score=30.11 Aligned_cols=19 Identities=21% Similarity=0.721 Sum_probs=15.5
Q ss_pred CCCChhcHHHHHHHhccCCCC
Q 013396 74 SCRHEFHLQCVLEWCQRSSQC 94 (444)
Q Consensus 74 ~CgH~FH~~CI~~Wlk~sssC 94 (444)
.|+|.||..|...|-. ..|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 5999999999998855 445
Done!