Query 013397
Match_columns 444
No_of_seqs 226 out of 886
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 03:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03133 beta-1,3-galactosyltr 100.0 2E-117 3E-122 948.7 38.8 429 1-430 1-437 (636)
2 smart00276 GLECT Galectin. Gal 100.0 6.7E-33 1.4E-37 243.4 17.5 127 164-349 1-127 (128)
3 PF00337 Gal-bind_lectin: Gala 100.0 4.9E-33 1.1E-37 243.5 14.9 132 163-349 1-133 (133)
4 cd00070 GLECT Galectin/galacto 100.0 2.3E-32 5E-37 239.1 16.4 126 163-347 1-126 (127)
5 KOG3587 Galectin, galactose-bi 99.9 3.2E-27 7E-32 212.5 16.2 137 161-351 3-140 (143)
6 KOG2287 Galactosyltransferases 99.5 1E-14 2.3E-19 148.4 6.0 144 288-432 5-150 (349)
7 PLN03193 beta-1,3-galactosyltr 99.0 9E-11 2E-15 121.9 3.4 89 327-430 103-198 (408)
8 PTZ00210 UDP-GlcNAc-dependent 98.6 8E-09 1.7E-13 106.6 1.5 55 376-430 78-142 (382)
9 KOG2288 Galactosyltransferases 90.9 0.29 6.3E-06 49.3 4.4 45 376-420 9-58 (274)
10 KOG2336 Molybdopterin biosynth 77.3 1.7 3.7E-05 44.8 2.5 39 365-406 171-216 (422)
11 PTZ00334 trans-sialidase; Prov 45.9 2.2E+02 0.0048 33.3 11.8 51 292-342 639-691 (780)
12 KOG1594 Uncharacterized enzyme 39.6 80 0.0017 32.6 6.4 54 288-345 129-188 (305)
13 PF06439 DUF1080: Domain of Un 39.1 80 0.0017 28.4 5.9 39 288-326 119-157 (185)
14 PF13385 Laminin_G_3: Concanav 30.6 1.4E+02 0.0031 24.8 5.7 51 290-340 79-129 (157)
15 PF00853 Runt: Runt domain; I 25.2 88 0.0019 28.8 3.6 23 295-317 95-126 (135)
16 PF09680 Tiny_TM_bacill: Prote 23.3 67 0.0015 21.5 1.8 14 6-19 5-18 (24)
17 TIGR01732 tiny_TM_bacill conse 21.0 83 0.0018 21.5 1.9 14 6-19 7-20 (26)
No 1
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.5e-117 Score=948.73 Aligned_cols=429 Identities=76% Similarity=1.198 Sum_probs=412.3
Q ss_pred CccccchHHHHHHHHHHHHHHhcccCCCCCcccccccccCCCCCCcccccCCCCCCCCCCCCcceeeccccccCcccCCC
Q 013397 1 MKKWYGGVLIASLFMLLLLRYGFMKNPIGESYLTSLISSNASNPLEWTHTAAAPGVQDPENSSQVISIDAITFGLFAQRN 80 (444)
Q Consensus 1 m~k~~~~~~i~~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~i~~~~~~~~l~~~~n 80 (444)
|||||||++|++|||+|+|||.++++|.++++++.++..|+|+||+|++++.++++++|+|++++|+.++++|+||+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (636)
T PLN03133 1 MKKWYGGVLVVSLFMLLVLRYVLLKNPIGESYLQSVFPSNTTNPLEWLDPTNPPAVQNPENSSQVISTDTIVSSLFATRN 80 (636)
T ss_pred CceeeeeehHHHHHHHHHHHHHHhcCCCCCCCcccccccccCCchhhcccCCCccccCCCccceeeccccchhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhhhhhhHhhhhhccccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcccccccCcccccccccCCCCCC
Q 013397 81 ISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIKEAGSAWNNLMASVEEEKLGYTNRSSVRKAKEKQCPHFLNKMNTTDLD 160 (444)
Q Consensus 81 ~s~~~~~~l~~w~~l~~l~~~s~~l~~a~~a~~~~~~aw~~l~~~~~~~~~~~~~~~~~~~~~~~~CP~sv~~~~~~~~~ 160 (444)
+|+|++|+|++|||||+|++|||+||+|+|||+||+.||++|+++++++++++.++++..+.++.+||++|+.|+++++.
T Consensus 81 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~ 160 (636)
T PLN03133 81 ISNEEQQSLLTWNHLKHLVDHAQVLPNGVEAIKEAGVAWESLMASVEEEKLGYTNESSLRKSKEKQCPYFLNKMNATELG 160 (636)
T ss_pred CchhhhhhhhHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCchhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999889988888877777889999999999999998
Q ss_pred CCCeeeeeCCCCCCCcEEEEEEEeCCCCCeEEEEccCCCCCCCCCCCeEEEEEeEeCCCCCCCCCEEEEcCcc-CCCCcc
Q 013397 161 RSSFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWT-LAHDWG 239 (444)
Q Consensus 161 ~~p~~~~LPcGL~~GssItVvG~p~~~a~rF~InL~g~~~~~~~~p~I~LHfNPRf~gd~~s~~pvIV~NT~~-~~g~WG 239 (444)
...|.+.|||||.+|++|||+|+|+.++++|+|||+|+..++++++||+|||||||++||++++|+||||||+ + |+||
T Consensus 161 ~~~~~~~iP~GL~~Gs~ItI~G~p~~~~~~F~InL~g~~~~g~~~~~iaLHfNpRf~gd~~t~~~vIV~NT~~~~-~~WG 239 (636)
T PLN03133 161 DSGYKLKIPCGLTQGSSITIIGIPDGLLGNFRIDLTGEPLPGEPDPPIILHYNVRLLGDKITEDPVIVQNTWTAA-HDWG 239 (636)
T ss_pred CCceEEecCCcCCCCCEEEEEEEeCCCCCeEEEEEeecCcCCCCCCCEEEEEcCccCCCccccCCEEEeCCCcCC-Cccc
Confidence 8999999999999999999999999999999999999977777789999999999999998999999999999 6 8999
Q ss_pred cceecCCCCCCccccccchhhhccccCCCCCCCCcc--cccccc-----ccCCCCccCCCCCCCCeEEEEEEEcCceEEE
Q 013397 240 EEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTV--STRLNN-----SRTSKTKRFFPFKQGHLFVATIRVGSEGIQT 312 (444)
Q Consensus 240 ~EERc~~~~s~~~~~Vdg~~~c~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~fPF~~G~~F~LtI~ag~egfhV 312 (444)
.||||++|+|+++++||||++||||+|+|+++++++ .||+|| +++.+..++|||++|++|++||+|+.|||||
T Consensus 240 ~EERc~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v 319 (636)
T PLN03133 240 EEERCPSPDPDKNKKVDDLDQCNKMVGRDDKRVLSTSLHSNGSRRSPMSQEATKARRYFPFKQGYLSVATLRVGTEGIQM 319 (636)
T ss_pred HhhhcCCCCccccccccchhhhhhhhcccccccccccccccccccccccccccccccCCCCCCCCcEEEEEEecCCEEEE
Confidence 999999999999999999999999999999887665 478886 6778888999999999999999999999999
Q ss_pred EeCCeeeeeeccCCCCCCCCccEEEEEccEEEEEEEeccCCCCCCCCCCcchhhhhcCCCCCCCcEEEEEeeeeccccch
Q 013397 313 TVDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFK 392 (444)
Q Consensus 313 ~VNGkHvtsF~yR~~l~~~~Vt~L~I~GDv~l~SV~a~~lP~s~p~~~~~~~e~~ka~pLpp~~~i~LfiGi~S~~N~F~ 392 (444)
+|||+|+++|+||++++||.|++|+|+|||+|+||.|.++|++||+++.+|+|.|+|+||+++++++|+|||.|+.+||+
T Consensus 320 ~VnG~H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~~p~~~~~~~~~d~e~lkAppL~~~~~~~LlI~V~Sap~nf~ 399 (636)
T PLN03133 320 TVDGKHITSFAYRETLEPWLVSEVRISGDLKLISVLASGLPTSEDSEHVIDLEALKSPPLSPKKPLDLFIGVFSTANNFK 399 (636)
T ss_pred EECCeEEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeCCCCCCchhcccchHHhcCCCCCCCCceEEEEEEeCCcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhccceeeccCceEEEEeecccCCCccchhh
Q 013397 393 RRMAVRRTWMQYTEVRSGTVAVRFFVGLVSFTEPYLLL 430 (444)
Q Consensus 393 ~RMavRrtwmq~~~v~s~~v~~RFFv~L~~~~e~~~~~ 430 (444)
+|||||+|||++..++++.|.+|||+|++..++++.+|
T Consensus 400 rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L 437 (636)
T PLN03133 400 RRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEEL 437 (636)
T ss_pred HHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHH
Confidence 99999999999999999999999999999888777655
No 2
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=100.00 E-value=6.7e-33 Score=243.38 Aligned_cols=127 Identities=36% Similarity=0.502 Sum_probs=118.5
Q ss_pred eeeeeCCCCCCCcEEEEEEEeCCCCCeEEEEccCCCCCCCCCCCeEEEEEeEeCCCCCCCCCEEEEcCccCCCCccccee
Q 013397 164 FKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEEVR 243 (444)
Q Consensus 164 ~~~~LPcGL~~GssItVvG~p~~~a~rF~InL~g~~~~~~~~p~I~LHfNPRf~gd~~s~~pvIV~NT~~~~g~WG~EER 243 (444)
|+..||+||.+|+.|+|+|++..++++|.|||+.+ .++|+|||||||+++ +||+||+.+ |.||.|||
T Consensus 1 ~~~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~------~~di~lH~n~rf~~~------~iV~Ns~~~-g~Wg~Eer 67 (128)
T smart00276 1 FTLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTG------GDDIALHFNPRFNEN------KIVCNSKLN-GSWGSEER 67 (128)
T ss_pred CcccCCCCCCCCCEEEEEEEECCCCCEEEEEeecC------CCCEEEEEeccCCCC------EEEEeCccC-CccchheE
Confidence 46789999999999999999999999999999985 258999999999976 899999998 89999999
Q ss_pred cCCCCCCccccccchhhhccccCCCCCCCCccccccccccCCCCccCCCCCCCCeEEEEEEEcCceEEEEeCCeeeeeec
Q 013397 244 CPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFA 323 (444)
Q Consensus 244 c~~~~s~~~~~Vdg~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~LtI~ag~egfhV~VNGkHvtsF~ 323 (444)
+ ..|||.+|++|+|+|.++.++|+|+|||+|+++|+
T Consensus 68 ~--------------------------------------------~~~Pf~~g~~F~l~i~~~~~~f~i~vng~~~~~f~ 103 (128)
T smart00276 68 E--------------------------------------------GGFPFQPGQPFDLTIIVQPDHFQIFVNGVHITTFP 103 (128)
T ss_pred c--------------------------------------------CCCCCCCCCEEEEEEEEcCCEEEEEECCEeEEEec
Confidence 5 47999999999999999999999999999999999
Q ss_pred cCCCCCCCCccEEEEEccEEEEEEEe
Q 013397 324 YRETLEPWLVNEVRISGDLKLISVLA 349 (444)
Q Consensus 324 yR~~l~~~~Vt~L~I~GDv~l~SV~a 349 (444)
||.+ +++|+.|.|.||++|++|.+
T Consensus 104 ~R~~--~~~i~~l~v~Gdv~l~~v~~ 127 (128)
T smart00276 104 HRLP--LESIDYLSINGDVQLTSVSF 127 (128)
T ss_pred CCCC--cccEeEEEEeCCEEEEEEEE
Confidence 9974 67999999999999999976
No 3
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=100.00 E-value=4.9e-33 Score=243.50 Aligned_cols=132 Identities=37% Similarity=0.596 Sum_probs=121.1
Q ss_pred CeeeeeCCCCCCCcEEEEEEEeCCCCCeEEEEccCCCCCCCCCCCeEEEEEeEeCC-CCCCCCCEEEEcCccCCCCcccc
Q 013397 163 SFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLG-DKITENPVIVQNTWTLAHDWGEE 241 (444)
Q Consensus 163 p~~~~LPcGL~~GssItVvG~p~~~a~rF~InL~g~~~~~~~~p~I~LHfNPRf~g-d~~s~~pvIV~NT~~~~g~WG~E 241 (444)
||++.||+||.+|++|+|+|++..++++|.|||+++. .++.++++|||||||++ + +||+||+.+ |.||.|
T Consensus 1 pf~~~l~~~l~~G~~i~i~G~~~~~~~~f~inl~~~~--~~~~~~i~lH~~~rf~~~~------~iv~Ns~~~-g~Wg~E 71 (133)
T PF00337_consen 1 PFTARLPGGLSPGDSIIIRGTVPPDAKRFSINLQTGP--NDPDDDIALHFNPRFDEQN------VIVRNSRIN-GKWGQE 71 (133)
T ss_dssp SEEEEETTEEETTEEEEEEEEEBTTSSBEEEEEEES---STTTTEEEEEEEEECTTEE------EEEEEEEET-TEE-SE
T ss_pred CceEEcCCCCCCCcEEEEEEEECCCCCEEEEEecCCC--cCCCCCEEEEEEEEeCCCc------eEEEeceEC-CEeccc
Confidence 8999999999999999999999999999999999974 34578999999999998 5 899999998 899999
Q ss_pred eecCCCCCCccccccchhhhccccCCCCCCCCccccccccccCCCCccCCCCCCCCeEEEEEEEcCceEEEEeCCeeeee
Q 013397 242 VRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITS 321 (444)
Q Consensus 242 ERc~~~~s~~~~~Vdg~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~LtI~ag~egfhV~VNGkHvts 321 (444)
||+ ..|||.+|++|+|+|.++.++|+|+|||+|+++
T Consensus 72 e~~--------------------------------------------~~~pf~~g~~F~i~I~~~~~~f~I~vng~~~~~ 107 (133)
T PF00337_consen 72 ERE--------------------------------------------SPFPFQPGQPFEIRIRVEEDGFKIYVNGKHFCS 107 (133)
T ss_dssp EEE--------------------------------------------SSTSSTTTSEEEEEEEEESSEEEEEETTEEEEE
T ss_pred eee--------------------------------------------eeeeecCCceEEEEEEEecCeeEEEECCeEEEE
Confidence 994 479999999999999999999999999999999
Q ss_pred eccCCCCCCCCccEEEEEccEEEEEEEe
Q 013397 322 FAYRETLEPWLVNEVRISGDLKLISVLA 349 (444)
Q Consensus 322 F~yR~~l~~~~Vt~L~I~GDv~l~SV~a 349 (444)
|+||. ++++|++|.|.||++|++|.+
T Consensus 108 F~~R~--~~~~i~~l~i~Gdv~i~~v~~ 133 (133)
T PF00337_consen 108 FPHRL--PLSSIDYLQIQGDVQIYSVEF 133 (133)
T ss_dssp EE-SS--CGGGEEEEEEEESEEEEEEEE
T ss_pred eeCcC--CHHHcCEEEEECCEEEEEEEC
Confidence 99996 457999999999999999975
No 4
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=100.00 E-value=2.3e-32 Score=239.11 Aligned_cols=126 Identities=37% Similarity=0.554 Sum_probs=118.5
Q ss_pred CeeeeeCCCCCCCcEEEEEEEeCCCCCeEEEEccCCCCCCCCCCCeEEEEEeEeCCCCCCCCCEEEEcCccCCCCcccce
Q 013397 163 SFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEEV 242 (444)
Q Consensus 163 p~~~~LPcGL~~GssItVvG~p~~~a~rF~InL~g~~~~~~~~p~I~LHfNPRf~gd~~s~~pvIV~NT~~~~g~WG~EE 242 (444)
||...|||+|.+|+.|+|+|++..++++|.|||+++. .+++|||||||.++ +||+||+.+ |.||.||
T Consensus 1 p~~~~l~~~l~~G~~i~i~G~~~~~~~~f~Inl~~~~------~~i~lH~n~rf~~~------~IV~Ns~~~-g~Wg~Ee 67 (127)
T cd00070 1 PYKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLGTGS------SDIALHFNPRFDEN------VIVRNSFLN-GNWGPEE 67 (127)
T ss_pred CcccccCCCCcCCCEEEEEEEECCCCCEEEEEEecCC------CCEEEEEeeeCCCC------EEEEcCCCC-CEecHhh
Confidence 6888999999999999999999999999999999853 38999999999986 899999998 8999999
Q ss_pred ecCCCCCCccccccchhhhccccCCCCCCCCccccccccccCCCCccCCCCCCCCeEEEEEEEcCceEEEEeCCeeeeee
Q 013397 243 RCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSF 322 (444)
Q Consensus 243 Rc~~~~s~~~~~Vdg~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~LtI~ag~egfhV~VNGkHvtsF 322 (444)
|+ ..|||.+|++|+|+|.++.++|+|+|||+|+++|
T Consensus 68 r~--------------------------------------------~~~pf~~g~~F~l~i~~~~~~f~i~vng~~~~~F 103 (127)
T cd00070 68 RS--------------------------------------------GGFPFQPGQPFELTILVEEDKFQIFVNGQHFFSF 103 (127)
T ss_pred cc--------------------------------------------CCCCCCCCCeEEEEEEEcCCEEEEEECCEeEEEe
Confidence 97 3799999999999999999999999999999999
Q ss_pred ccCCCCCCCCccEEEEEccEEEEEE
Q 013397 323 AYRETLEPWLVNEVRISGDLKLISV 347 (444)
Q Consensus 323 ~yR~~l~~~~Vt~L~I~GDv~l~SV 347 (444)
+||. ++++|+.|.|.||+.+++|
T Consensus 104 ~~R~--~~~~i~~l~v~Gdv~i~~v 126 (127)
T cd00070 104 PHRL--PLESIDYLSINGDVSLTSV 126 (127)
T ss_pred cCcC--ChhhEEEEEEeCCEEEEEe
Confidence 9997 5589999999999999987
No 5
>KOG3587 consensus Galectin, galactose-binding lectin [Extracellular structures]
Probab=99.95 E-value=3.2e-27 Score=212.54 Aligned_cols=137 Identities=31% Similarity=0.439 Sum_probs=124.1
Q ss_pred CCCeeeeeCCCCCCCcEEEEEEEeCCC-CCeEEEEccCCCCCCCCCCCeEEEEEeEeCCCCCCCCCEEEEcCccCCCCcc
Q 013397 161 RSSFKLQVPCGLTQGSSITIIGIPNGL-LGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWG 239 (444)
Q Consensus 161 ~~p~~~~LPcGL~~GssItVvG~p~~~-a~rF~InL~g~~~~~~~~p~I~LHfNPRf~gd~~s~~pvIV~NT~~~~g~WG 239 (444)
.+||...++++|.+|..+++.|.+..+ .++|.++++.+-..+. +.+|+|||||||+++ .|||||+.+ |.||
T Consensus 3 ~~p~~~~~~~~l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~dia~Hfnprf~~~------~VVrNs~~~-g~Wg 74 (143)
T KOG3587|consen 3 GVPFPVPIPSGLPPGSQVTIKGLVLYGIPKRFAVNLRFGTNLDS-DSDIALHFNPRFDEK------GVVRNSLIN-GEWG 74 (143)
T ss_pred CcccccccccCcCCCcEEEEEEEEcccCCCcceeeeEeecccCC-CCcEEEEEeccCCCC------eEEEecccC-CccC
Confidence 467888889999999999999999865 6789999988755544 677999999999998 599999988 9999
Q ss_pred cceecCCCCCCccccccchhhhccccCCCCCCCCccccccccccCCCCccCCCCCCCCeEEEEEEEcCceEEEEeCCeee
Q 013397 240 EEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHI 319 (444)
Q Consensus 240 ~EERc~~~~s~~~~~Vdg~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~LtI~ag~egfhV~VNGkHv 319 (444)
.|||. ..+||+.|++|.|+|.++.+.|+|.|||.|+
T Consensus 75 ~eE~~--------------------------------------------~~~PF~~g~~F~l~I~~~~~~~~I~VNg~~f 110 (143)
T KOG3587|consen 75 LEERE--------------------------------------------GGNPFQPGQPFDLTILVEEDKFQIFVNGVHF 110 (143)
T ss_pred chhhc--------------------------------------------CCCCCCCCCeEEEEEEEccCeEEEEECCEEE
Confidence 99995 5899999999999999999999999999999
Q ss_pred eeeccCCCCCCCCccEEEEEccEEEEEEEecc
Q 013397 320 TSFAYRETLEPWLVNEVRISGDLKLISVLASG 351 (444)
Q Consensus 320 tsF~yR~~l~~~~Vt~L~I~GDv~l~SV~a~~ 351 (444)
++|+||. ++..+..|.|.||++|.+|.+..
T Consensus 111 ~~y~HR~--p~~~v~~l~i~Gdv~i~~i~~~~ 140 (143)
T KOG3587|consen 111 ADYPHRI--PPSSVQTLQINGDVQITSIEFSN 140 (143)
T ss_pred EeecCCC--CChheeEEEEeeeEEEEEEEEEc
Confidence 9999997 56799999999999999998865
No 6
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1e-14 Score=148.44 Aligned_cols=144 Identities=32% Similarity=0.383 Sum_probs=117.7
Q ss_pred ccCCCCCCCCeEEEEEEEcCceEEEEeCCeeeeeeccCCCCCCCCccEEEEEccEEEEEEEeccCCCCCCCCCCcchhhh
Q 013397 288 KRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEAL 367 (444)
Q Consensus 288 ~~~fPF~~G~~F~LtI~ag~egfhV~VNGkHvtsF~yR~~l~~~~Vt~L~I~GDv~l~SV~a~~lP~s~p~~~~~~~e~~ 367 (444)
.+.+|+..+..|+.++.+..+++++.+++++..+|.++..++.+..++...++.+..+.......+.+......... .+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 83 (349)
T KOG2287|consen 5 EFLFPLLPGKRFVSTLRLVLEGLQISEPLRLLTSFLLLPTIKNCLATGWAFSTPLLLTGDFGSSFPLSFADFQKFFY-LL 83 (349)
T ss_pred cccccccccchhhhhhhhhheeeeeccccccCCcccccCCCcccccccccccCCccccCcccccccccchhhccChh-hh
Confidence 56799999999999999999999999999999999999987888999999999997777777777776665332111 11
Q ss_pred hcCCCCCC-CcEEEEEeeeeccccchhhHHHhhhhccceeeccCceEEEEeecccCCCc-cchhhhh
Q 013397 368 RSYPLSLH-KPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLVSFTE-PYLLLLW 432 (444)
Q Consensus 368 ka~pLpp~-~~i~LfiGi~S~~N~F~~RMavRrtwmq~~~v~s~~v~~RFFv~L~~~~e-~~~~~~~ 432 (444)
-.|+.... .+++|+|+|.|+++||+||||+|+||||+..|++++|.++|++|++++++ ++.++.+
T Consensus 84 ~~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~ 150 (349)
T KOG2287|consen 84 YLPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLAD 150 (349)
T ss_pred cCChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHH
Confidence 11222212 25899999999999999999999999999999999999999999999884 4445443
No 7
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=99.04 E-value=9e-11 Score=121.93 Aligned_cols=89 Identities=26% Similarity=0.288 Sum_probs=71.0
Q ss_pred CCCCCCccEEEEEccEEEEEEEeccCCCCCCCCCCcchhhhhcCCCCCCCcEEEEEeeeeccccchhhHHHhhhhcccee
Q 013397 327 TLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTE 406 (444)
Q Consensus 327 ~l~~~~Vt~L~I~GDv~l~SV~a~~lP~s~p~~~~~~~e~~ka~pLpp~~~i~LfiGi~S~~N~F~~RMavRrtwmq~~~ 406 (444)
.+++|.++..+ +.++.++++|+++|++. + +++.++++.|+|||.|+.+||+||+|||+|||++..
T Consensus 103 ~le~el~~~~~------~~~~~~~~~~~~~~~~~------~---~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~ 167 (408)
T PLN03193 103 NLEMELAAARA------AQESILNGSPISEDLKK------T---QSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGE 167 (408)
T ss_pred HHhHHHHHHHh------hhhhhccCCCccccccc------c---CCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcc
Confidence 45666777666 67777889998888643 2 777678899999999999999999999999999866
Q ss_pred ec-----cCceEEEEeecccC--CCccchhh
Q 013397 407 VR-----SGTVAVRFFVGLVS--FTEPYLLL 430 (444)
Q Consensus 407 v~-----s~~v~~RFFv~L~~--~~e~~~~~ 430 (444)
.+ ...+++||++|.++ .++++..|
T Consensus 168 ~~~kle~~~gv~vrFVIG~s~~~~~~ldr~L 198 (408)
T PLN03193 168 KRKKLEEEKGIIIRFVIGHSATSGGILDRAI 198 (408)
T ss_pred cccccccCCcEEEEEEeecCCCcchHHHHHH
Confidence 54 26799999999987 44565554
No 8
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=98.64 E-value=8e-09 Score=106.55 Aligned_cols=55 Identities=22% Similarity=0.224 Sum_probs=50.7
Q ss_pred CcEEEEEeeeecccc--chhhHHHhhhhccceeec------cCceEEEEeecccCCC--ccchhh
Q 013397 376 KPVDLFIGVFSTANN--FKRRMAVRRTWMQYTEVR------SGTVAVRFFVGLVSFT--EPYLLL 430 (444)
Q Consensus 376 ~~i~LfiGi~S~~N~--F~~RMavRrtwmq~~~v~------s~~v~~RFFv~L~~~~--e~~~~~ 430 (444)
+.--+++||+|+.|+ |.|||+.|+|||||+.|+ +|++++|||+|+|+++ |++..+
T Consensus 78 ~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L 142 (382)
T PTZ00210 78 QRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSL 142 (382)
T ss_pred CCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHH
Confidence 445678999999999 999999999999999999 9999999999999999 888765
No 9
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=90.92 E-value=0.29 Score=49.27 Aligned_cols=45 Identities=36% Similarity=0.543 Sum_probs=38.7
Q ss_pred CcEEEEEeeeeccccchhhHHHhhhhccc-----eeeccCceEEEEeecc
Q 013397 376 KPVDLFIGVFSTANNFKRRMAVRRTWMQY-----TEVRSGTVAVRFFVGL 420 (444)
Q Consensus 376 ~~i~LfiGi~S~~N~F~~RMavRrtwmq~-----~~v~s~~v~~RFFv~L 420 (444)
+.+.++|||.++-+.=+||=+||.|||-. ..=....|++||-+|=
T Consensus 9 ~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~ 58 (274)
T KOG2288|consen 9 RKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT 58 (274)
T ss_pred cceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc
Confidence 47889999999999999999999999976 2224778999999986
No 10
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=77.34 E-value=1.7 Score=44.78 Aligned_cols=39 Identities=44% Similarity=0.688 Sum_probs=32.4
Q ss_pred hhhhcCCCCCCCcEEEEEeeeeccccchhhHHH-------hhhhcccee
Q 013397 365 EALRSYPLSLHKPVDLFIGVFSTANNFKRRMAV-------RRTWMQYTE 406 (444)
Q Consensus 365 e~~ka~pLpp~~~i~LfiGi~S~~N~F~~RMav-------Rrtwmq~~~ 406 (444)
.+.....+-+||+|+| |+|...||.-|||| +.+||....
T Consensus 171 ~~is~g~~~~gkpvDL---VLSCVDNfEARMavN~ACNE~~q~WmESGV 216 (422)
T KOG2336|consen 171 DRISNGSLCPGKPVDL---VLSCVDNFEARMAVNQACNELNQTWMESGV 216 (422)
T ss_pred HHhhcCCCCCCCcceE---EeeehhhHHHHHHHHHHHHHhhhHHHHccC
Confidence 4566788888999999 68999999999998 568997543
No 11
>PTZ00334 trans-sialidase; Provisional
Probab=45.85 E-value=2.2e+02 Score=33.28 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=37.6
Q ss_pred CCCCCCeEEEEEEEcC-ceEEEEeCCeeeeeeccCCC-CCCCCccEEEEEccE
Q 013397 292 PFKQGHLFVATIRVGS-EGIQTTVDGKHITSFAYRET-LEPWLVNEVRISGDL 342 (444)
Q Consensus 292 PF~~G~~F~LtI~ag~-egfhV~VNGkHvtsF~yR~~-l~~~~Vt~L~I~GDv 342 (444)
+...|+...+.|.... ..-.++|||+.+.+-..-.. -.+..|+++.|-||-
T Consensus 639 tWe~~k~yqVal~L~~G~~gsvYVDG~~vg~~~~~l~~~~~~~IshFyiGgdg 691 (780)
T PTZ00334 639 NWEPETTHQVAIVLRNGKQGSAYVDGQRVGDASCELKNTDSKGISHFYIGGDG 691 (780)
T ss_pred cccCCCeEEEEEEEeCCCeEEEEECCEEecCcccccCCCCCcccceEEECCCc
Confidence 5668899999998854 57899999999976443221 135689999998764
No 12
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=39.58 E-value=80 Score=32.57 Aligned_cols=54 Identities=24% Similarity=0.233 Sum_probs=37.6
Q ss_pred ccCCCCCCCCeEEEEEEEcCceEEEEe-----CCeee-eeeccCCCCCCCCccEEEEEccEEEE
Q 013397 288 KRFFPFKQGHLFVATIRVGSEGIQTTV-----DGKHI-TSFAYRETLEPWLVNEVRISGDLKLI 345 (444)
Q Consensus 288 ~~~fPF~~G~~F~LtI~ag~egfhV~V-----NGkHv-tsF~yR~~l~~~~Vt~L~I~GDv~l~ 345 (444)
.|+|-| .|.++|..+.+..+.+. |++.+ .+|+|++=|...+|++++|.|=-.++
T Consensus 129 iWp~~F----e~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtYf~vsdisevrveGL~tld 188 (305)
T KOG1594|consen 129 IWPHSF----ELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTYFRVSDISEVRVEGLETLD 188 (305)
T ss_pred hCCcce----EEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeeeEeecccceEEEecccccc
Confidence 455544 46677777766555443 77777 68999987777899999998844333
No 13
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=39.14 E-value=80 Score=28.37 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=31.2
Q ss_pred ccCCCCCCCCeEEEEEEEcCceEEEEeCCeeeeeeccCC
Q 013397 288 KRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRE 326 (444)
Q Consensus 288 ~~~fPF~~G~~F~LtI~ag~egfhV~VNGkHvtsF~yR~ 326 (444)
.....+..|+=..++|.|..+.+.++|||+.+.+|.-..
T Consensus 119 ~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~~ 157 (185)
T PF06439_consen 119 SVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDPS 157 (185)
T ss_dssp SS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETTS
T ss_pred cccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcCC
Confidence 345677899999999999999999999999999887554
No 14
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=30.57 E-value=1.4e+02 Score=24.84 Aligned_cols=51 Identities=10% Similarity=0.052 Sum_probs=34.7
Q ss_pred CCCCCCCCeEEEEEEEcCceEEEEeCCeeeeeeccCCCCCCCCccEEEEEc
Q 013397 290 FFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISG 340 (444)
Q Consensus 290 ~fPF~~G~~F~LtI~ag~egfhV~VNGkHvtsF~yR~~l~~~~Vt~L~I~G 340 (444)
..++..++-..+++........++|||+.+.+...-.......-..+.|-+
T Consensus 79 ~~~~~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~~~~~~~~~~iG~ 129 (157)
T PF13385_consen 79 DSNLPDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNISLNSNGPLFIGG 129 (157)
T ss_dssp BS---TT-EEEEEEEEETTEEEEEETTEEETTCTEESSSSTTSCCEEEESS
T ss_pred CcccCCCCEEEEEEEEECCeEEEEECCEEEEeEeccCCcCCCCcceEEEee
Confidence 457778999999999999999999999999887765432323444555543
No 15
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=25.15 E-value=88 Score=28.83 Aligned_cols=23 Identities=43% Similarity=0.600 Sum_probs=16.6
Q ss_pred CCCeEEEEEEEcC---------ceEEEEeCCe
Q 013397 295 QGHLFVATIRVGS---------EGIQTTVDGK 317 (444)
Q Consensus 295 ~G~~F~LtI~ag~---------egfhV~VNGk 317 (444)
+|+.|+|+|.+.. +.++|+|||-
T Consensus 95 RGKsFtltItv~t~PpqvAty~~AIKVTVDGP 126 (135)
T PF00853_consen 95 RGKSFTLTITVFTNPPQVATYHRAIKVTVDGP 126 (135)
T ss_dssp TTSEEEEEEEE-SSS-EEEEECCEEEEESS-S
T ss_pred CccceEEEEEEeCCCchHHhheeeEEEEecCC
Confidence 6999999999875 4566777774
No 16
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=23.32 E-value=67 Score=21.55 Aligned_cols=14 Identities=50% Similarity=0.849 Sum_probs=11.7
Q ss_pred chHHHHHHHHHHHH
Q 013397 6 GGVLIASLFMLLLL 19 (444)
Q Consensus 6 ~~~~i~~l~~~l~~ 19 (444)
|-.||+.||++|++
T Consensus 5 ~FalivVLFILLiI 18 (24)
T PF09680_consen 5 GFALIVVLFILLII 18 (24)
T ss_pred cchhHHHHHHHHHH
Confidence 55788999999987
No 17
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=20.99 E-value=83 Score=21.48 Aligned_cols=14 Identities=50% Similarity=0.826 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHH
Q 013397 6 GGVLIASLFMLLLL 19 (444)
Q Consensus 6 ~~~~i~~l~~~l~~ 19 (444)
|-.+|+.||++|++
T Consensus 7 gf~livVLFILLII 20 (26)
T TIGR01732 7 GFALIVVLFILLVI 20 (26)
T ss_pred chHHHHHHHHHHHH
Confidence 55788889999987
Done!