Query 013398
Match_columns 444
No_of_seqs 285 out of 2078
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:27:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1.6E-42 3.6E-47 337.5 27.4 369 3-423 109-491 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 8.1E-40 1.8E-44 318.8 27.3 378 13-423 51-457 (966)
3 KOG4162 Predicted calmodulin-b 100.0 2.9E-36 6.2E-41 301.6 32.9 417 1-424 165-583 (799)
4 TIGR00990 3a0801s09 mitochondr 100.0 1.1E-32 2.4E-37 291.3 41.3 259 136-422 308-576 (615)
5 PRK15174 Vi polysaccharide exp 100.0 3.3E-31 7.1E-36 280.4 37.4 333 17-422 49-386 (656)
6 PRK11447 cellulose synthase su 100.0 9.9E-30 2.1E-34 285.6 39.5 353 15-416 274-739 (1157)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-29 4.7E-34 276.0 39.0 371 11-423 466-872 (899)
8 PRK11447 cellulose synthase su 100.0 6.8E-29 1.5E-33 278.9 38.4 326 10-383 303-742 (1157)
9 PRK15174 Vi polysaccharide exp 100.0 5.4E-29 1.2E-33 263.5 34.8 300 70-422 49-352 (656)
10 TIGR00990 3a0801s09 mitochondr 100.0 7.5E-29 1.6E-33 262.2 35.3 306 62-421 126-500 (615)
11 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-28 4.7E-33 268.1 39.2 370 11-421 23-430 (899)
12 PRK10049 pgaA outer membrane p 100.0 4.1E-25 8.8E-30 238.4 39.9 349 11-428 50-467 (765)
13 PRK09782 bacteriophage N4 rece 100.0 5E-25 1.1E-29 239.0 38.3 329 63-423 376-712 (987)
14 PRK11788 tetratricopeptide rep 100.0 6E-25 1.3E-29 219.9 35.6 299 70-422 42-354 (389)
15 PRK10049 pgaA outer membrane p 99.9 7.6E-25 1.6E-29 236.3 35.8 333 19-423 24-428 (765)
16 PRK09782 bacteriophage N4 rece 99.9 8.6E-25 1.9E-29 237.2 36.1 256 136-422 490-745 (987)
17 KOG1126 DNA-binding cell divis 99.9 2.9E-26 6.2E-31 227.5 20.8 248 153-423 345-626 (638)
18 KOG2002 TPR-containing nuclear 99.9 1.8E-24 3.9E-29 221.7 31.2 382 8-423 305-751 (1018)
19 PRK11788 tetratricopeptide rep 99.9 2.7E-24 5.8E-29 215.2 30.4 269 132-423 45-317 (389)
20 KOG0547 Translocase of outer m 99.9 6.4E-23 1.4E-27 196.6 36.0 240 161-423 326-572 (606)
21 KOG1126 DNA-binding cell divis 99.9 3E-23 6.4E-28 206.2 25.9 307 7-384 314-623 (638)
22 KOG1155 Anaphase-promoting com 99.9 2.3E-22 5E-27 191.8 29.2 364 13-436 167-555 (559)
23 KOG0547 Translocase of outer m 99.9 1.8E-21 3.8E-26 186.8 31.1 212 151-383 350-568 (606)
24 PF13429 TPR_15: Tetratricopep 99.9 8E-24 1.7E-28 202.4 13.6 263 128-417 14-277 (280)
25 KOG2002 TPR-containing nuclear 99.9 1.1E-20 2.5E-25 194.1 33.9 350 11-423 165-531 (1018)
26 KOG1155 Anaphase-promoting com 99.9 1.2E-20 2.7E-25 180.0 30.6 295 65-418 166-496 (559)
27 PRK12370 invasion protein regu 99.9 2.4E-21 5.1E-26 202.0 27.7 242 157-423 252-508 (553)
28 KOG1173 Anaphase-promoting com 99.9 1.7E-21 3.6E-26 190.2 23.7 251 150-423 267-524 (611)
29 KOG1125 TPR repeat-containing 99.9 6.4E-22 1.4E-26 193.9 19.7 242 165-423 289-533 (579)
30 KOG0624 dsRNA-activated protei 99.9 7E-21 1.5E-25 175.5 24.5 299 60-418 103-422 (504)
31 PRK11189 lipoprotein NlpI; Pro 99.9 1.9E-20 4.1E-25 180.1 26.6 239 134-403 38-286 (296)
32 PRK11189 lipoprotein NlpI; Pro 99.9 9.6E-21 2.1E-25 182.1 24.5 249 75-367 38-286 (296)
33 PRK12370 invasion protein regu 99.9 1.3E-20 2.8E-25 196.5 27.2 247 137-417 276-535 (553)
34 KOG1173 Anaphase-promoting com 99.9 1.9E-19 4E-24 176.0 28.8 342 3-398 134-533 (611)
35 TIGR02521 type_IV_pilW type IV 99.9 8.9E-20 1.9E-24 167.5 25.1 203 159-416 29-231 (234)
36 PRK14574 hmsH outer membrane p 99.9 1.4E-18 3E-23 185.6 37.4 174 10-235 34-207 (822)
37 KOG0548 Molecular co-chaperone 99.9 1.2E-19 2.6E-24 176.7 25.7 372 13-425 5-463 (539)
38 KOG1125 TPR repeat-containing 99.9 2.7E-20 5.8E-25 182.6 18.9 257 129-410 292-564 (579)
39 TIGR00540 hemY_coli hemY prote 99.8 4E-18 8.7E-23 171.5 32.4 302 69-419 90-401 (409)
40 PF13429 TPR_15: Tetratricopep 99.8 6.7E-21 1.5E-25 182.2 11.2 241 157-424 6-250 (280)
41 TIGR00540 hemY_coli hemY prote 99.8 7.9E-18 1.7E-22 169.4 33.9 301 13-381 87-399 (409)
42 PLN02789 farnesyltranstransfer 99.8 7.6E-19 1.6E-23 169.1 23.9 221 158-401 34-268 (320)
43 KOG2076 RNA polymerase III tra 99.8 1.6E-17 3.4E-22 170.2 32.9 99 315-415 412-510 (895)
44 KOG4162 Predicted calmodulin-b 99.8 1.8E-17 4E-22 167.2 31.8 264 151-422 468-788 (799)
45 KOG1174 Anaphase-promoting com 99.8 7E-18 1.5E-22 159.2 26.0 247 155-425 260-508 (564)
46 KOG0624 dsRNA-activated protei 99.8 6.6E-19 1.4E-23 162.6 18.4 265 134-426 50-379 (504)
47 KOG2003 TPR repeat-containing 99.8 9.5E-18 2.1E-22 159.8 26.2 257 130-414 427-686 (840)
48 PRK10747 putative protoheme IX 99.8 9.3E-17 2E-21 160.9 34.2 253 135-419 131-392 (398)
49 KOG1174 Anaphase-promoting com 99.8 1.2E-16 2.5E-21 151.0 30.8 282 64-398 233-515 (564)
50 PRK10747 putative protoheme IX 99.8 2.5E-16 5.5E-21 157.8 34.9 242 161-423 117-363 (398)
51 PLN02789 farnesyltranstransfer 99.8 1.3E-17 2.8E-22 160.7 24.4 235 138-393 53-312 (320)
52 PRK14574 hmsH outer membrane p 99.8 1.9E-16 4E-21 169.4 35.1 130 294-427 379-523 (822)
53 KOG1129 TPR repeat-containing 99.8 1.4E-18 2.9E-23 159.6 15.3 215 160-397 255-472 (478)
54 COG3063 PilF Tfp pilus assembl 99.8 2.9E-17 6.2E-22 144.8 22.6 207 162-389 36-242 (250)
55 TIGR02521 type_IV_pilW type IV 99.8 2.3E-17 5.1E-22 151.4 22.2 195 131-383 40-234 (234)
56 KOG2076 RNA polymerase III tra 99.8 9.6E-17 2.1E-21 164.5 27.5 307 69-424 145-485 (895)
57 KOG1129 TPR repeat-containing 99.8 2E-17 4.3E-22 152.0 17.3 242 160-424 222-465 (478)
58 KOG1840 Kinesin light chain [C 99.7 2.4E-16 5.2E-21 158.5 23.5 263 155-431 193-493 (508)
59 KOG0548 Molecular co-chaperone 99.7 5.2E-16 1.1E-20 151.5 24.8 303 70-423 9-427 (539)
60 KOG0550 Molecular chaperone (D 99.7 4.2E-17 9E-22 154.2 16.5 267 130-420 57-353 (486)
61 KOG1840 Kinesin light chain [C 99.7 6.4E-16 1.4E-20 155.4 26.1 253 12-380 201-478 (508)
62 COG3063 PilF Tfp pilus assembl 99.7 6.8E-16 1.5E-20 136.2 20.6 195 131-351 44-241 (250)
63 TIGR03302 OM_YfiO outer membra 99.7 6.6E-16 1.4E-20 143.7 20.9 196 157-416 29-231 (235)
64 cd05804 StaR_like StaR_like; a 99.7 3.3E-14 7.1E-19 140.5 33.7 324 62-431 5-349 (355)
65 KOG2003 TPR repeat-containing 99.7 4.2E-15 9.2E-20 141.9 25.0 300 72-422 428-733 (840)
66 PLN03218 maturation of RBCL 1; 99.7 5.6E-13 1.2E-17 146.5 44.1 257 130-416 515-782 (1060)
67 PLN03081 pentatricopeptide (PP 99.7 5.2E-14 1.1E-18 151.4 35.1 340 12-417 191-557 (697)
68 PRK15359 type III secretion sy 99.7 5E-16 1.1E-20 132.9 15.1 127 252-401 13-139 (144)
69 PLN03081 pentatricopeptide (PP 99.7 2.8E-14 6.1E-19 153.5 31.1 319 65-422 191-528 (697)
70 TIGR03302 OM_YfiO outer membra 99.7 2E-15 4.4E-20 140.4 19.1 162 189-421 27-199 (235)
71 PRK15359 type III secretion sy 99.7 3.6E-16 7.8E-21 133.8 12.8 116 302-424 13-128 (144)
72 cd05804 StaR_like StaR_like; a 99.7 2.6E-15 5.6E-20 148.4 20.8 210 157-383 2-217 (355)
73 COG2956 Predicted N-acetylgluc 99.7 1.9E-14 4.2E-19 132.5 23.9 266 131-421 44-315 (389)
74 KOG1127 TPR repeat-containing 99.7 1.5E-14 3.2E-19 149.4 25.2 338 61-420 490-916 (1238)
75 PRK10370 formate-dependent nit 99.7 1.3E-15 2.7E-20 137.5 15.5 124 296-423 53-179 (198)
76 PLN03218 maturation of RBCL 1; 99.7 1E-12 2.3E-17 144.4 40.7 261 129-416 479-747 (1060)
77 COG2956 Predicted N-acetylgluc 99.7 5.5E-14 1.2E-18 129.5 25.7 230 166-419 40-280 (389)
78 KOG0495 HAT repeat protein [RN 99.7 6.7E-13 1.4E-17 132.1 35.2 307 65-423 518-852 (913)
79 KOG0550 Molecular chaperone (D 99.6 7.8E-15 1.7E-19 139.0 18.1 175 200-383 174-352 (486)
80 PLN03077 Protein ECB2; Provisi 99.6 7.1E-13 1.5E-17 145.9 36.0 117 294-416 601-719 (857)
81 KOG0495 HAT repeat protein [RN 99.6 1.8E-12 3.9E-17 129.1 34.7 261 131-420 525-785 (913)
82 PRK10370 formate-dependent nit 99.6 5.7E-14 1.2E-18 126.7 19.7 150 203-384 24-176 (198)
83 PLN03077 Protein ECB2; Provisi 99.6 3.8E-12 8.2E-17 140.2 35.9 336 16-418 228-619 (857)
84 COG5010 TadD Flp pilus assembl 99.6 2.3E-13 4.9E-18 122.8 20.1 175 180-376 52-226 (257)
85 TIGR02552 LcrH_SycD type III s 99.6 2.8E-14 6E-19 120.7 13.5 117 303-423 4-120 (135)
86 PRK15179 Vi polysaccharide bio 99.6 1.3E-13 2.7E-18 145.3 20.9 160 169-383 57-219 (694)
87 KOG1128 Uncharacterized conser 99.6 1.7E-13 3.7E-18 138.1 20.6 227 158-422 395-621 (777)
88 PRK15179 Vi polysaccharide bio 99.5 2.3E-13 5E-18 143.3 19.3 134 271-419 86-219 (694)
89 PRK15363 pathogenicity island 99.5 1.3E-13 2.7E-18 116.7 12.4 109 311-422 28-137 (157)
90 COG5010 TadD Flp pilus assembl 99.5 1E-12 2.2E-17 118.6 18.9 172 153-345 59-230 (257)
91 KOG0553 TPR repeat-containing 99.5 8.6E-14 1.9E-18 127.7 12.2 109 293-405 92-200 (304)
92 PRK14720 transcript cleavage f 99.5 1.1E-12 2.4E-17 139.3 20.5 215 154-423 24-258 (906)
93 KOG1156 N-terminal acetyltrans 99.5 5.4E-11 1.2E-15 118.9 29.6 337 12-419 9-436 (700)
94 PF12569 NARP1: NMDA receptor- 99.5 3.7E-11 7.9E-16 122.5 28.8 269 131-422 13-339 (517)
95 TIGR02552 LcrH_SycD type III s 99.5 2.3E-12 5E-17 108.9 14.6 118 254-391 5-122 (135)
96 PF12569 NARP1: NMDA receptor- 99.4 4.9E-11 1.1E-15 121.6 26.7 248 161-414 4-288 (517)
97 KOG1156 N-terminal acetyltrans 99.4 2.9E-11 6.3E-16 120.8 24.0 258 137-425 22-287 (700)
98 KOG1127 TPR repeat-containing 99.4 8.7E-12 1.9E-16 129.3 20.1 228 173-419 470-702 (1238)
99 KOG3060 Uncharacterized conser 99.4 7.3E-11 1.6E-15 105.8 23.0 182 156-358 47-231 (289)
100 PRK04841 transcriptional regul 99.4 1.6E-10 3.5E-15 128.3 30.0 326 14-383 413-762 (903)
101 KOG0553 TPR repeat-containing 99.4 2.2E-12 4.8E-17 118.5 10.5 103 319-424 83-185 (304)
102 PRK14720 transcript cleavage f 99.4 3E-11 6.5E-16 128.5 20.4 232 131-421 40-310 (906)
103 PRK15363 pathogenicity island 99.3 3.4E-11 7.3E-16 102.0 14.2 98 272-382 36-133 (157)
104 KOG1130 Predicted G-alpha GTPa 99.3 6E-11 1.3E-15 112.7 17.3 233 165-426 99-353 (639)
105 KOG1915 Cell cycle control pro 99.3 3.1E-08 6.8E-13 96.1 35.8 262 137-422 298-590 (677)
106 PLN03088 SGT1, suppressor of 99.3 2E-11 4.3E-16 120.3 14.6 103 295-401 15-117 (356)
107 COG3071 HemY Uncharacterized e 99.3 1.2E-08 2.6E-13 97.3 30.7 267 134-417 96-390 (400)
108 COG4783 Putative Zn-dependent 99.3 4.8E-10 1E-14 109.3 21.6 137 192-383 303-439 (484)
109 KOG1130 Predicted G-alpha GTPa 99.3 1.7E-11 3.8E-16 116.3 11.3 256 167-426 23-313 (639)
110 KOG2376 Signal recognition par 99.3 3.4E-08 7.5E-13 98.2 33.9 348 14-424 83-494 (652)
111 TIGR02795 tol_pal_ybgF tol-pal 99.3 6.7E-11 1.4E-15 97.2 12.4 110 317-426 2-114 (119)
112 COG4235 Cytochrome c biogenesi 99.3 6.9E-11 1.5E-15 109.5 13.6 130 298-431 138-271 (287)
113 KOG1128 Uncharacterized conser 99.3 1.3E-10 2.7E-15 117.8 16.1 195 160-382 423-617 (777)
114 KOG3060 Uncharacterized conser 99.3 1.1E-09 2.4E-14 98.3 20.1 184 189-395 46-232 (289)
115 KOG3785 Uncharacterized conser 99.3 6.8E-09 1.5E-13 97.3 26.0 325 14-415 61-420 (557)
116 KOG1915 Cell cycle control pro 99.3 2.2E-07 4.8E-12 90.3 36.6 368 3-415 66-498 (677)
117 COG3071 HemY Uncharacterized e 99.2 4.3E-08 9.3E-13 93.5 30.9 294 12-381 86-390 (400)
118 PLN03088 SGT1, suppressor of 99.2 9.9E-11 2.2E-15 115.4 13.3 102 320-424 5-106 (356)
119 PF13414 TPR_11: TPR repeat; P 99.2 4.4E-11 9.5E-16 88.6 8.1 68 315-383 1-69 (69)
120 PF04733 Coatomer_E: Coatomer 99.2 3.2E-10 6.9E-15 108.2 16.0 254 135-424 14-272 (290)
121 KOG2376 Signal recognition par 99.2 2.3E-09 5E-14 106.4 21.7 220 131-384 21-256 (652)
122 PRK04841 transcriptional regul 99.2 8.5E-09 1.9E-13 114.6 28.8 289 10-350 452-764 (903)
123 PF04733 Coatomer_E: Coatomer 99.2 3.5E-10 7.6E-15 107.8 15.1 257 73-389 11-271 (290)
124 COG4235 Cytochrome c biogenesi 99.2 2.6E-10 5.6E-15 105.7 13.7 124 176-350 137-260 (287)
125 CHL00033 ycf3 photosystem I as 99.2 3.6E-10 7.9E-15 99.4 14.1 119 298-419 15-144 (168)
126 PRK02603 photosystem I assembl 99.2 8.3E-10 1.8E-14 97.5 15.9 112 259-383 23-151 (172)
127 PRK02603 photosystem I assembl 99.2 5.4E-10 1.2E-14 98.7 14.5 107 314-422 32-154 (172)
128 cd00189 TPR Tetratricopeptide 99.2 2E-10 4.4E-15 88.7 10.3 98 319-419 2-99 (100)
129 TIGR02795 tol_pal_ybgF tol-pal 99.2 6.1E-10 1.3E-14 91.4 13.4 106 272-391 3-113 (119)
130 PRK10153 DNA-binding transcrip 99.2 6.7E-10 1.5E-14 114.0 15.5 139 271-422 339-487 (517)
131 COG4783 Putative Zn-dependent 99.1 1.5E-09 3.2E-14 106.0 16.3 122 294-419 318-439 (484)
132 PF09976 TPR_21: Tetratricopep 99.1 2.5E-09 5.4E-14 91.7 16.1 116 296-415 25-145 (145)
133 cd00189 TPR Tetratricopeptide 99.1 6.6E-10 1.4E-14 85.8 11.3 98 273-383 2-99 (100)
134 PF13414 TPR_11: TPR repeat; P 99.1 5.8E-11 1.3E-15 87.9 4.8 68 159-228 1-69 (69)
135 CHL00033 ycf3 photosystem I as 99.1 1.9E-09 4.1E-14 94.8 15.2 101 270-383 34-151 (168)
136 PRK11906 transcriptional regul 99.1 2.3E-09 4.9E-14 105.2 17.0 156 247-413 273-432 (458)
137 PRK10153 DNA-binding transcrip 99.1 4.3E-09 9.2E-14 108.1 18.7 150 186-383 328-484 (517)
138 PF13432 TPR_16: Tetratricopep 99.1 2.3E-10 5E-15 83.6 6.0 64 166-231 2-65 (65)
139 KOG4340 Uncharacterized conser 99.1 5.8E-09 1.3E-13 95.7 16.2 257 134-422 22-310 (459)
140 PF12895 Apc3: Anaphase-promot 99.1 4.3E-10 9.4E-15 86.8 7.7 80 296-378 3-84 (84)
141 PF12895 Apc3: Anaphase-promot 99.1 6.4E-10 1.4E-14 85.8 8.5 83 329-414 1-84 (84)
142 PF13432 TPR_16: Tetratricopep 99.1 5.3E-10 1.2E-14 81.7 7.6 64 321-387 1-64 (65)
143 PRK10866 outer membrane biogen 99.1 2.6E-08 5.7E-13 92.7 20.7 201 159-413 30-237 (243)
144 PRK11906 transcriptional regul 99.1 9.7E-09 2.1E-13 100.8 18.0 181 156-382 243-437 (458)
145 COG0457 NrfG FOG: TPR repeat [ 99.0 3.2E-07 6.9E-12 82.3 26.7 207 160-383 58-267 (291)
146 PF12688 TPR_5: Tetratrico pep 99.0 7.9E-09 1.7E-13 84.7 12.8 98 317-416 1-103 (120)
147 KOG3785 Uncharacterized conser 99.0 6.8E-08 1.5E-12 90.7 19.7 84 135-222 35-118 (557)
148 PRK15331 chaperone protein Sic 99.0 4.1E-09 8.8E-14 89.8 10.5 107 306-416 27-133 (165)
149 PF13525 YfiO: Outer membrane 99.0 2.1E-07 4.6E-12 84.4 22.5 189 160-408 4-198 (203)
150 KOG2047 mRNA splicing factor [ 99.0 5.1E-06 1.1E-10 83.7 33.4 364 9-429 348-731 (835)
151 PRK10866 outer membrane biogen 99.0 1.6E-07 3.4E-12 87.5 21.8 177 193-422 30-209 (243)
152 KOG2047 mRNA splicing factor [ 99.0 2.7E-06 5.8E-11 85.8 30.9 255 150-416 338-614 (835)
153 PF09976 TPR_21: Tetratricopep 99.0 1.9E-08 4.2E-13 86.1 13.8 119 245-379 24-145 (145)
154 PRK10803 tol-pal system protei 98.9 1.3E-08 2.8E-13 95.5 12.9 106 317-422 142-251 (263)
155 COG0457 NrfG FOG: TPR repeat [ 98.9 1.7E-06 3.6E-11 77.5 26.7 224 174-420 36-268 (291)
156 PF14938 SNAP: Soluble NSF att 98.9 2.4E-08 5.2E-13 95.4 14.4 183 10-230 35-229 (282)
157 PF13525 YfiO: Outer membrane 98.9 4.5E-08 9.7E-13 88.8 14.9 180 127-371 10-197 (203)
158 PRK10803 tol-pal system protei 98.9 2.9E-08 6.2E-13 93.2 13.9 92 296-390 157-253 (263)
159 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 1.1E-08 2.4E-13 100.4 10.8 72 311-383 69-143 (453)
160 KOG0543 FKBP-type peptidyl-pro 98.9 3.4E-08 7.5E-13 94.8 13.2 125 294-422 220-360 (397)
161 KOG4340 Uncharacterized conser 98.9 9.2E-08 2E-12 87.9 15.2 216 172-412 21-265 (459)
162 KOG0543 FKBP-type peptidyl-pro 98.9 9.9E-08 2.2E-12 91.7 15.9 145 199-383 212-357 (397)
163 PF14559 TPR_19: Tetratricopep 98.8 1.2E-08 2.5E-13 75.1 7.6 64 329-395 3-66 (68)
164 COG4785 NlpI Lipoprotein NlpI, 98.8 1.2E-07 2.7E-12 83.4 14.5 179 151-347 89-267 (297)
165 PF13371 TPR_9: Tetratricopept 98.8 2E-08 4.4E-13 75.0 8.6 71 323-396 1-71 (73)
166 PF12688 TPR_5: Tetratrico pep 98.8 7.6E-08 1.6E-12 78.9 12.4 96 273-381 3-104 (120)
167 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 8.3E-08 1.8E-12 94.7 14.9 112 296-414 183-294 (395)
168 PF13371 TPR_9: Tetratricopept 98.8 1.3E-08 2.9E-13 76.0 6.6 69 167-237 1-69 (73)
169 PF14559 TPR_19: Tetratricopep 98.8 1.9E-08 4E-13 74.0 7.0 65 295-361 4-68 (68)
170 KOG1070 rRNA processing protei 98.8 1.1E-06 2.4E-11 95.0 22.5 220 175-417 1438-1663(1710)
171 KOG4234 TPR repeat-containing 98.8 6.3E-08 1.4E-12 84.1 10.3 97 324-422 102-202 (271)
172 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 3.8E-08 8.3E-13 96.6 9.5 70 345-417 69-141 (453)
173 PF06552 TOM20_plant: Plant sp 98.7 2.6E-07 5.6E-12 79.6 12.1 95 295-393 4-119 (186)
174 KOG4648 Uncharacterized conser 98.7 9.3E-09 2E-13 96.0 3.4 224 130-383 105-332 (536)
175 COG4785 NlpI Lipoprotein NlpI, 98.7 1E-06 2.2E-11 77.8 15.8 97 162-261 66-162 (297)
176 PRK15331 chaperone protein Sic 98.7 2.2E-07 4.8E-12 79.3 11.3 90 295-389 50-139 (165)
177 PF14938 SNAP: Soluble NSF att 98.7 1.3E-06 2.8E-11 83.5 17.6 102 318-419 115-227 (282)
178 COG4700 Uncharacterized protei 98.7 3.2E-06 6.9E-11 72.9 17.4 130 272-416 90-221 (251)
179 KOG3081 Vesicle coat complex C 98.6 2.5E-05 5.3E-10 71.3 22.1 222 159-411 39-264 (299)
180 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.2E-06 2.5E-11 86.6 14.2 115 243-378 180-294 (395)
181 KOG4555 TPR repeat-containing 98.6 1.1E-06 2.5E-11 71.2 11.4 88 295-383 56-146 (175)
182 KOG3081 Vesicle coat complex C 98.5 2.3E-05 5E-10 71.4 20.1 197 163-383 74-273 (299)
183 PF13424 TPR_12: Tetratricopep 98.5 1.4E-07 2.9E-12 71.5 5.1 67 353-419 6-77 (78)
184 PF13424 TPR_12: Tetratricopep 98.5 5.1E-07 1.1E-11 68.3 7.6 69 314-382 2-76 (78)
185 COG4700 Uncharacterized protei 98.5 1.9E-05 4.1E-10 68.2 16.9 157 167-379 62-220 (251)
186 PF13512 TPR_18: Tetratricopep 98.5 4E-06 8.7E-11 70.1 12.6 107 317-423 10-134 (142)
187 KOG4648 Uncharacterized conser 98.5 6E-07 1.3E-11 84.1 8.3 100 294-397 109-208 (536)
188 KOG1070 rRNA processing protei 98.4 0.00012 2.7E-09 79.8 25.7 247 153-423 1450-1706(1710)
189 KOG1941 Acetylcholine receptor 98.4 7.3E-05 1.6E-09 70.9 21.3 207 197-418 124-361 (518)
190 COG1729 Uncharacterized protei 98.4 4.1E-06 8.9E-11 77.1 12.6 105 320-424 144-251 (262)
191 KOG1941 Acetylcholine receptor 98.4 1.2E-05 2.6E-10 76.2 15.6 126 296-422 136-280 (518)
192 PF06552 TOM20_plant: Plant sp 98.4 3.7E-06 8.1E-11 72.5 11.2 111 177-323 7-120 (186)
193 KOG2053 Mitochondrial inherita 98.4 0.00025 5.5E-09 74.4 26.2 232 135-388 22-260 (932)
194 KOG4234 TPR repeat-containing 98.4 5.5E-06 1.2E-10 72.3 11.5 100 294-397 107-211 (271)
195 KOG4555 TPR repeat-containing 98.4 4.2E-06 9.2E-11 67.9 10.1 97 322-419 48-146 (175)
196 COG1729 Uncharacterized protei 98.4 8.6E-06 1.9E-10 75.0 13.1 96 295-393 154-254 (262)
197 PF13512 TPR_18: Tetratricopep 98.3 9.2E-06 2E-10 67.9 12.0 92 294-388 22-133 (142)
198 COG4105 ComL DNA uptake lipopr 98.3 0.00016 3.4E-09 66.3 20.4 72 160-233 33-107 (254)
199 KOG4642 Chaperone-dependent E3 98.3 1.8E-06 4E-11 77.2 7.3 101 295-397 23-126 (284)
200 PF13431 TPR_17: Tetratricopep 98.3 8.4E-07 1.8E-11 55.4 3.3 32 305-337 2-33 (34)
201 PF13428 TPR_14: Tetratricopep 98.3 1.6E-06 3.4E-11 57.8 4.8 43 317-360 1-43 (44)
202 COG4105 ComL DNA uptake lipopr 98.3 0.00027 5.8E-09 64.7 20.7 190 193-409 32-225 (254)
203 PF13428 TPR_14: Tetratricopep 98.3 1.2E-06 2.6E-11 58.4 4.2 42 162-203 2-43 (44)
204 PF13431 TPR_17: Tetratricopep 98.2 8.3E-07 1.8E-11 55.4 2.0 33 183-215 1-33 (34)
205 PF04184 ST7: ST7 protein; In 98.2 0.00016 3.5E-09 71.6 18.5 189 205-428 178-386 (539)
206 KOG3617 WD40 and TPR repeat-co 98.2 0.001 2.2E-08 69.3 24.5 191 11-260 758-995 (1416)
207 COG3898 Uncharacterized membra 98.2 0.0084 1.8E-07 57.9 29.8 256 71-381 128-392 (531)
208 KOG2053 Mitochondrial inherita 98.1 0.0007 1.5E-08 71.2 22.8 228 172-421 20-259 (932)
209 KOG4642 Chaperone-dependent E3 98.1 1E-05 2.2E-10 72.5 7.8 103 323-428 16-118 (284)
210 PF05843 Suf: Suppressor of fo 98.1 0.00015 3.3E-09 69.1 15.8 125 295-421 14-140 (280)
211 KOG2796 Uncharacterized conser 98.1 0.00066 1.4E-08 62.0 18.4 127 296-425 191-323 (366)
212 PF00515 TPR_1: Tetratricopept 98.0 8.1E-06 1.8E-10 50.9 4.3 32 318-349 2-33 (34)
213 KOG2471 TPR repeat-containing 98.0 0.00024 5.2E-09 69.9 16.2 107 131-243 249-381 (696)
214 PF13281 DUF4071: Domain of un 98.0 0.0017 3.8E-08 63.4 21.5 177 160-383 140-336 (374)
215 PF07719 TPR_2: Tetratricopept 98.0 1.6E-05 3.4E-10 49.5 5.0 34 317-350 1-34 (34)
216 PF04184 ST7: ST7 protein; In 97.9 0.00065 1.4E-08 67.5 16.9 217 173-424 180-421 (539)
217 KOG0545 Aryl-hydrocarbon recep 97.9 0.00011 2.5E-09 66.1 9.7 110 320-431 181-307 (329)
218 KOG3617 WD40 and TPR repeat-co 97.8 0.001 2.2E-08 69.3 17.6 227 130-415 736-994 (1416)
219 KOG2610 Uncharacterized conser 97.8 0.0012 2.6E-08 62.3 16.4 112 298-413 153-272 (491)
220 KOG0545 Aryl-hydrocarbon recep 97.8 0.00022 4.7E-09 64.4 10.2 122 63-232 178-299 (329)
221 KOG0376 Serine-threonine phosp 97.8 3.6E-05 7.8E-10 75.8 5.7 94 296-393 18-111 (476)
222 PF00515 TPR_1: Tetratricopept 97.7 6.2E-05 1.3E-09 46.8 4.6 31 353-383 2-32 (34)
223 PF07719 TPR_2: Tetratricopept 97.7 3.3E-05 7.2E-10 48.0 3.2 34 195-230 1-34 (34)
224 PF03704 BTAD: Bacterial trans 97.7 0.0017 3.6E-08 55.4 14.6 70 353-424 63-132 (146)
225 COG3898 Uncharacterized membra 97.7 0.06 1.3E-06 52.2 27.6 235 163-416 122-391 (531)
226 PF10300 DUF3808: Protein of u 97.7 0.0033 7E-08 64.5 18.7 192 217-423 179-382 (468)
227 PF12968 DUF3856: Domain of Un 97.7 0.0038 8.3E-08 50.1 14.5 105 319-425 9-137 (144)
228 KOG0376 Serine-threonine phosp 97.6 3.3E-05 7.1E-10 76.1 3.3 98 323-423 10-107 (476)
229 KOG2796 Uncharacterized conser 97.6 0.00065 1.4E-08 62.0 11.3 139 197-350 179-319 (366)
230 COG3118 Thioredoxin domain-con 97.6 0.0094 2E-07 55.7 19.0 135 161-349 134-268 (304)
231 COG3118 Thioredoxin domain-con 97.6 0.0019 4E-08 60.3 14.3 116 295-417 147-265 (304)
232 KOG1586 Protein required for f 97.6 0.013 2.9E-07 52.8 19.0 225 131-417 23-265 (288)
233 COG2976 Uncharacterized protei 97.6 0.0019 4.2E-08 56.6 13.4 114 301-418 71-189 (207)
234 KOG1586 Protein required for f 97.6 0.0058 1.3E-07 55.0 16.6 102 239-351 121-229 (288)
235 PF05843 Suf: Suppressor of fo 97.6 0.003 6.5E-08 60.3 15.9 42 197-240 3-44 (280)
236 COG0790 FOG: TPR repeat, SEL1 97.6 0.039 8.5E-07 52.8 23.3 169 196-383 74-268 (292)
237 KOG3616 Selective LIM binding 97.6 0.065 1.4E-06 55.8 25.1 52 163-222 767-818 (1636)
238 KOG1914 mRNA cleavage and poly 97.5 0.011 2.4E-07 59.3 18.8 239 183-441 267-529 (656)
239 PF13181 TPR_8: Tetratricopept 97.5 0.00021 4.5E-09 44.3 4.7 32 318-349 2-33 (34)
240 PF02259 FAT: FAT domain; Int 97.5 0.078 1.7E-06 52.0 24.9 154 158-329 143-304 (352)
241 KOG1308 Hsp70-interacting prot 97.5 8.7E-05 1.9E-09 70.0 3.2 117 295-416 127-243 (377)
242 PF14561 TPR_20: Tetratricopep 97.4 0.0019 4E-08 50.2 9.9 49 301-350 7-55 (90)
243 KOG0551 Hsp90 co-chaperone CNS 97.4 0.00088 1.9E-08 63.1 9.5 91 291-383 90-184 (390)
244 KOG0551 Hsp90 co-chaperone CNS 97.4 0.00068 1.5E-08 63.9 8.7 103 319-423 83-188 (390)
245 KOG2610 Uncharacterized conser 97.4 0.0075 1.6E-07 57.1 15.3 120 296-418 117-239 (491)
246 PF10300 DUF3808: Protein of u 97.3 0.0028 6.1E-08 64.9 12.4 119 136-261 247-376 (468)
247 KOG1585 Protein required for f 97.3 0.024 5.3E-07 51.5 16.6 199 162-412 32-251 (308)
248 KOG1585 Protein required for f 97.2 0.073 1.6E-06 48.5 18.9 167 236-415 35-217 (308)
249 PF13181 TPR_8: Tetratricopept 97.2 0.0007 1.5E-08 41.9 4.5 31 353-383 2-32 (34)
250 PF13281 DUF4071: Domain of un 97.2 0.014 2.9E-07 57.3 15.1 169 241-421 150-338 (374)
251 KOG0530 Protein farnesyltransf 97.2 0.009 2E-07 54.7 12.5 65 170-236 52-117 (318)
252 PF14561 TPR_20: Tetratricopep 97.1 0.0072 1.6E-07 46.9 10.2 80 336-416 7-86 (90)
253 COG0790 FOG: TPR repeat, SEL1 97.1 0.042 9.1E-07 52.6 17.4 184 135-349 54-269 (292)
254 KOG3616 Selective LIM binding 97.1 0.2 4.4E-06 52.3 22.4 27 65-91 546-572 (1636)
255 PF07079 DUF1347: Protein of u 97.0 0.4 8.7E-06 47.6 27.4 62 315-378 458-521 (549)
256 COG2909 MalT ATP-dependent tra 97.0 0.32 6.8E-06 52.1 24.2 295 105-420 327-650 (894)
257 PF04781 DUF627: Protein of un 97.0 0.0077 1.7E-07 48.0 9.6 107 201-347 2-108 (111)
258 PF03704 BTAD: Bacterial trans 97.0 0.046 9.9E-07 46.4 15.1 61 318-379 63-123 (146)
259 PF13174 TPR_6: Tetratricopept 97.0 0.0014 3E-08 40.1 4.0 31 319-349 2-32 (33)
260 PF13176 TPR_7: Tetratricopept 96.9 0.0022 4.7E-08 40.4 4.8 30 391-420 2-31 (36)
261 KOG1550 Extracellular protein 96.9 0.17 3.6E-06 53.2 21.0 235 159-418 242-505 (552)
262 KOG1308 Hsp70-interacting prot 96.9 0.00042 9E-09 65.6 1.4 88 330-420 127-214 (377)
263 KOG1550 Extracellular protein 96.9 0.074 1.6E-06 55.8 18.3 183 176-381 227-426 (552)
264 KOG0530 Protein farnesyltransf 96.9 0.072 1.6E-06 49.0 15.5 113 300-416 61-175 (318)
265 COG3914 Spy Predicted O-linked 96.8 0.018 3.9E-07 58.5 12.2 130 298-431 47-185 (620)
266 PF14853 Fis1_TPR_C: Fis1 C-te 96.8 0.0049 1.1E-07 42.5 5.8 42 318-360 2-43 (53)
267 KOG3824 Huntingtin interacting 96.8 0.0047 1E-07 57.7 7.5 65 294-360 128-192 (472)
268 PF13176 TPR_7: Tetratricopept 96.7 0.0032 7E-08 39.6 4.4 27 320-346 2-28 (36)
269 PF08631 SPO22: Meiosis protei 96.7 0.55 1.2E-05 44.7 24.6 75 1-80 26-101 (278)
270 PF08631 SPO22: Meiosis protei 96.7 0.56 1.2E-05 44.6 23.3 125 133-262 4-151 (278)
271 PF13174 TPR_6: Tetratricopept 96.7 0.0031 6.8E-08 38.4 4.1 31 353-383 1-31 (33)
272 PF08424 NRDE-2: NRDE-2, neces 96.7 0.087 1.9E-06 51.3 16.2 161 152-347 10-184 (321)
273 KOG0985 Vesicle coat protein c 96.6 1.5 3.3E-05 47.8 26.2 211 158-411 1101-1335(1666)
274 KOG3824 Huntingtin interacting 96.6 0.0075 1.6E-07 56.4 7.2 70 326-398 125-194 (472)
275 PF02259 FAT: FAT domain; Int 96.5 0.8 1.7E-05 44.8 22.3 124 294-420 158-341 (352)
276 PF04910 Tcf25: Transcriptiona 96.5 0.13 2.9E-06 50.7 16.4 106 318-423 104-228 (360)
277 PF14853 Fis1_TPR_C: Fis1 C-te 96.5 0.015 3.3E-07 40.1 6.9 45 353-399 2-46 (53)
278 smart00028 TPR Tetratricopepti 96.5 0.0041 9E-08 36.8 3.8 31 319-349 3-33 (34)
279 PRK10941 hypothetical protein; 96.5 0.029 6.3E-07 52.9 11.1 76 319-397 183-258 (269)
280 COG2976 Uncharacterized protei 96.5 0.23 5.1E-06 43.8 15.3 83 297-383 104-190 (207)
281 smart00028 TPR Tetratricopepti 96.4 0.0042 9.1E-08 36.7 3.3 32 196-229 2-33 (34)
282 KOG2300 Uncharacterized conser 96.4 0.78 1.7E-05 46.0 20.1 221 174-413 288-552 (629)
283 PF13374 TPR_10: Tetratricopep 96.2 0.008 1.7E-07 38.8 4.1 39 10-48 2-40 (42)
284 KOG3364 Membrane protein invol 96.2 0.1 2.2E-06 43.2 11.0 83 316-400 31-117 (149)
285 KOG1914 mRNA cleavage and poly 96.2 0.9 1.9E-05 46.2 19.6 215 150-383 268-503 (656)
286 KOG0985 Vesicle coat protein c 96.2 2.6 5.7E-05 46.1 25.8 288 71-423 992-1314(1666)
287 PF12968 DUF3856: Domain of Un 96.2 0.16 3.5E-06 41.0 11.7 98 272-380 8-128 (144)
288 KOG0529 Protein geranylgeranyl 96.1 0.25 5.5E-06 48.4 15.3 100 296-399 89-194 (421)
289 COG4976 Predicted methyltransf 96.1 0.0081 1.7E-07 54.0 4.5 61 170-232 4-64 (287)
290 PF08424 NRDE-2: NRDE-2, neces 96.1 0.32 7E-06 47.3 16.1 119 303-425 6-139 (321)
291 PRK10941 hypothetical protein; 96.0 0.037 8E-07 52.2 8.9 73 163-237 183-255 (269)
292 KOG2471 TPR repeat-containing 96.0 0.068 1.5E-06 53.2 10.8 142 204-361 215-378 (696)
293 KOG2396 HAT (Half-A-TPR) repea 95.9 0.081 1.8E-06 52.9 11.0 89 300-392 89-178 (568)
294 COG4976 Predicted methyltransf 95.9 0.014 3.1E-07 52.5 5.3 54 296-350 9-62 (287)
295 PF04910 Tcf25: Transcriptiona 95.9 0.24 5.3E-06 48.9 14.5 106 153-260 32-167 (360)
296 PF09613 HrpB1_HrpK: Bacterial 95.9 0.15 3.1E-06 43.8 11.1 110 294-410 22-131 (160)
297 KOG2300 Uncharacterized conser 95.9 2.3 5E-05 42.8 31.5 121 295-419 336-476 (629)
298 COG4649 Uncharacterized protei 95.9 0.88 1.9E-05 39.5 15.5 49 313-363 163-211 (221)
299 PF04781 DUF627: Protein of un 95.8 0.081 1.7E-06 42.3 8.6 45 371-417 63-107 (111)
300 KOG4507 Uncharacterized conser 95.7 0.065 1.4E-06 54.5 9.5 122 299-424 588-712 (886)
301 KOG4507 Uncharacterized conser 95.6 0.012 2.5E-07 59.6 4.0 100 296-399 621-721 (886)
302 PF09613 HrpB1_HrpK: Bacterial 95.5 0.48 1E-05 40.7 12.6 83 319-404 12-94 (160)
303 KOG1258 mRNA processing protei 95.3 2.6 5.5E-05 43.5 19.4 230 163-415 299-542 (577)
304 PF13374 TPR_10: Tetratricopep 95.2 0.045 9.8E-07 35.1 4.6 29 318-346 3-31 (42)
305 KOG2396 HAT (Half-A-TPR) repea 95.1 0.11 2.4E-06 52.0 8.8 84 150-235 94-178 (568)
306 KOG1310 WD40 repeat protein [G 95.1 0.13 2.9E-06 51.7 9.2 86 296-383 388-476 (758)
307 PF09986 DUF2225: Uncharacteri 95.0 0.2 4.3E-06 45.6 9.5 85 296-381 91-194 (214)
308 COG5107 RNA14 Pre-mRNA 3'-end 94.9 4.5 9.8E-05 40.4 19.9 241 150-419 291-533 (660)
309 COG3914 Spy Predicted O-linked 94.8 1.1 2.3E-05 46.1 15.0 65 174-240 44-110 (620)
310 TIGR02561 HrpB1_HrpK type III 94.6 0.52 1.1E-05 39.8 10.2 74 294-369 22-95 (153)
311 KOG3783 Uncharacterized conser 94.5 1.7 3.7E-05 44.3 15.4 67 154-222 260-330 (546)
312 KOG0529 Protein geranylgeranyl 94.5 0.93 2E-05 44.6 13.2 170 150-327 52-239 (421)
313 PRK15180 Vi polysaccharide bio 94.5 0.2 4.4E-06 49.9 8.7 123 296-422 303-425 (831)
314 PF09986 DUF2225: Uncharacteri 94.5 0.52 1.1E-05 42.9 11.0 88 135-222 90-192 (214)
315 COG4941 Predicted RNA polymera 94.5 1.4 3.1E-05 42.2 13.9 192 178-396 213-407 (415)
316 KOG3364 Membrane protein invol 94.5 0.28 6.1E-06 40.6 8.1 61 296-358 49-111 (149)
317 COG4649 Uncharacterized protei 94.4 2.4 5.1E-05 36.9 14.0 28 65-92 96-123 (221)
318 KOG1464 COP9 signalosome, subu 94.3 3.6 7.8E-05 38.4 15.8 208 174-431 40-270 (440)
319 PF04190 DUF410: Protein of un 94.3 4.8 0.0001 37.9 18.1 129 189-329 84-240 (260)
320 PF07720 TPR_3: Tetratricopept 94.2 0.15 3.4E-06 31.9 4.9 32 318-349 2-35 (36)
321 PF12862 Apc5: Anaphase-promot 94.1 0.35 7.6E-06 37.7 7.9 34 390-423 43-76 (94)
322 PF10345 Cohesin_load: Cohesin 94.0 9.9 0.00021 40.6 33.4 367 6-416 6-477 (608)
323 PF10602 RPN7: 26S proteasome 94.0 0.82 1.8E-05 40.3 11.1 99 317-415 36-140 (177)
324 TIGR02561 HrpB1_HrpK type III 93.7 0.4 8.6E-06 40.5 7.8 73 329-404 22-94 (153)
325 COG4941 Predicted RNA polymera 93.6 4.1 8.8E-05 39.2 15.0 125 296-423 270-400 (415)
326 PRK15180 Vi polysaccharide bio 93.4 0.58 1.2E-05 46.8 9.6 111 152-265 314-424 (831)
327 PF10345 Cohesin_load: Cohesin 93.4 13 0.00028 39.7 26.7 128 54-219 292-428 (608)
328 PF07721 TPR_4: Tetratricopept 93.0 0.13 2.8E-06 29.6 2.8 23 197-219 3-25 (26)
329 KOG1310 WD40 repeat protein [G 92.8 0.3 6.4E-06 49.3 6.8 87 330-419 387-476 (758)
330 COG5191 Uncharacterized conser 92.7 0.18 3.9E-06 47.6 4.8 86 304-393 95-181 (435)
331 PRK13184 pknD serine/threonine 92.7 2.4 5.2E-05 47.0 14.1 130 245-383 488-622 (932)
332 KOG2422 Uncharacterized conser 92.5 14 0.00031 38.1 18.0 168 244-420 250-451 (665)
333 COG2909 MalT ATP-dependent tra 92.4 19 0.00042 39.1 30.3 241 160-413 414-684 (894)
334 PF07721 TPR_4: Tetratricopept 92.3 0.19 4.2E-06 28.8 3.0 22 319-340 3-24 (26)
335 COG2912 Uncharacterized conser 92.3 0.97 2.1E-05 42.2 9.0 73 321-396 185-257 (269)
336 PF10373 EST1_DNA_bind: Est1 D 92.2 0.59 1.3E-05 44.1 8.0 62 301-364 1-62 (278)
337 COG5191 Uncharacterized conser 92.1 0.21 4.5E-06 47.1 4.4 78 156-235 102-180 (435)
338 PF12862 Apc5: Anaphase-promot 92.1 0.67 1.4E-05 36.1 6.7 56 328-383 9-72 (94)
339 PF10516 SHNi-TPR: SHNi-TPR; 91.9 0.41 9E-06 30.4 4.4 33 389-421 2-34 (38)
340 PF11207 DUF2989: Protein of u 91.8 1.1 2.3E-05 40.0 8.4 72 299-371 123-197 (203)
341 PF07720 TPR_3: Tetratricopept 91.7 0.26 5.5E-06 30.9 3.2 33 195-229 1-35 (36)
342 PF04053 Coatomer_WDAD: Coatom 91.6 11 0.00024 38.4 16.7 69 296-379 332-400 (443)
343 KOG0890 Protein kinase of the 91.6 39 0.00084 41.0 26.8 237 170-421 1458-1735(2382)
344 PF10373 EST1_DNA_bind: Est1 D 91.5 0.63 1.4E-05 43.9 7.3 62 336-400 1-62 (278)
345 KOG4814 Uncharacterized conser 91.3 2.3 5.1E-05 44.1 11.2 100 319-420 356-460 (872)
346 PF07079 DUF1347: Protein of u 91.2 18 0.00039 36.4 28.8 52 359-413 469-520 (549)
347 KOG1258 mRNA processing protei 91.1 21 0.00046 37.0 27.7 78 150-229 68-146 (577)
348 KOG2041 WD40 repeat protein [G 90.8 25 0.00054 37.3 21.1 172 154-343 686-878 (1189)
349 KOG2041 WD40 repeat protein [G 90.8 10 0.00022 40.1 15.1 185 177-411 679-875 (1189)
350 PRK13184 pknD serine/threonine 90.8 2.1 4.5E-05 47.4 11.1 124 295-423 488-626 (932)
351 KOG1839 Uncharacterized protei 90.7 2.4 5.3E-05 47.5 11.4 109 314-422 1012-1133(1236)
352 COG5107 RNA14 Pre-mRNA 3'-end 90.7 20 0.00044 36.0 17.2 207 183-419 290-497 (660)
353 COG2912 Uncharacterized conser 90.5 1.2 2.6E-05 41.5 7.8 69 166-236 186-254 (269)
354 KOG4014 Uncharacterized conser 90.4 12 0.00026 33.0 14.3 196 192-423 31-239 (248)
355 COG3629 DnrI DNA-binding trans 90.2 1.2 2.6E-05 42.1 7.6 60 163-222 155-214 (280)
356 PF10579 Rapsyn_N: Rapsyn N-te 90.0 4 8.8E-05 30.5 8.6 61 358-420 12-75 (80)
357 KOG4814 Uncharacterized conser 89.8 7.7 0.00017 40.5 13.3 87 293-381 365-457 (872)
358 PF10516 SHNi-TPR: SHNi-TPR; 88.7 0.83 1.8E-05 29.0 3.7 27 354-380 3-29 (38)
359 KOG0890 Protein kinase of the 88.2 71 0.0015 38.9 23.4 136 246-395 1643-1796(2382)
360 PF00244 14-3-3: 14-3-3 protei 88.1 10 0.00022 35.1 12.1 58 165-222 5-64 (236)
361 PRK11619 lytic murein transgly 88.1 41 0.00089 36.1 24.1 115 297-416 256-374 (644)
362 PF11207 DUF2989: Protein of u 87.8 8.8 0.00019 34.3 10.9 54 271-337 141-198 (203)
363 COG3629 DnrI DNA-binding trans 87.7 4 8.6E-05 38.6 9.2 64 316-380 152-215 (280)
364 PF10602 RPN7: 26S proteasome 87.5 5.3 0.00011 35.2 9.5 61 162-222 37-100 (177)
365 COG3947 Response regulator con 86.2 2.5 5.5E-05 39.8 6.8 54 167-220 285-338 (361)
366 PF04053 Coatomer_WDAD: Coatom 85.9 25 0.00053 35.9 14.4 29 194-222 346-374 (443)
367 PF10579 Rapsyn_N: Rapsyn N-te 85.7 4.1 9E-05 30.4 6.5 58 322-380 11-71 (80)
368 PF15015 NYD-SP12_N: Spermatog 85.3 6 0.00013 39.2 9.1 82 293-376 187-286 (569)
369 smart00386 HAT HAT (Half-A-TPR 84.8 1.3 2.8E-05 26.1 3.0 30 175-204 1-30 (33)
370 KOG1464 COP9 signalosome, subu 84.7 35 0.00076 32.0 14.7 202 133-381 38-260 (440)
371 KOG1538 Uncharacterized conser 84.3 18 0.00039 38.0 12.3 37 407-443 1031-1072(1081)
372 PF15015 NYD-SP12_N: Spermatog 83.8 6.4 0.00014 39.1 8.6 83 330-414 196-288 (569)
373 KOG1839 Uncharacterized protei 83.5 5.2 0.00011 45.1 8.8 119 299-419 955-1088(1236)
374 KOG3783 Uncharacterized conser 83.2 16 0.00035 37.4 11.5 129 299-431 250-389 (546)
375 PRK12798 chemotaxis protein; R 83.1 53 0.0012 32.8 20.9 29 319-347 259-287 (421)
376 COG3947 Response regulator con 82.8 4.4 9.5E-05 38.3 6.8 57 321-378 283-339 (361)
377 KOG1538 Uncharacterized conser 82.6 70 0.0015 33.9 16.1 24 199-222 636-659 (1081)
378 PF10255 Paf67: RNA polymerase 81.8 6.9 0.00015 39.1 8.3 57 166-222 127-191 (404)
379 KOG2581 26S proteasome regulat 80.9 56 0.0012 32.5 13.7 59 324-383 216-278 (493)
380 TIGR03504 FimV_Cterm FimV C-te 80.6 2.5 5.4E-05 27.8 3.2 25 198-222 2-26 (44)
381 KOG3807 Predicted membrane pro 80.3 59 0.0013 31.5 15.7 52 204-260 193-244 (556)
382 KOG3807 Predicted membrane pro 79.3 27 0.00059 33.7 10.8 84 297-383 199-306 (556)
383 smart00386 HAT HAT (Half-A-TPR 79.2 5.5 0.00012 23.2 4.4 26 332-358 2-27 (33)
384 KOG2422 Uncharacterized conser 78.6 59 0.0013 33.9 13.6 115 132-248 248-394 (665)
385 PF10952 DUF2753: Protein of u 78.4 17 0.00037 29.7 7.9 26 391-416 53-78 (140)
386 COG4455 ImpE Protein of avirul 78.0 12 0.00027 33.9 7.7 56 295-351 14-69 (273)
387 smart00299 CLH Clathrin heavy 77.8 38 0.00083 28.0 12.4 48 171-219 17-64 (140)
388 PF11846 DUF3366: Domain of un 77.7 22 0.00048 31.5 9.7 49 333-383 127-175 (193)
389 TIGR03504 FimV_Cterm FimV C-te 77.5 4.4 9.5E-05 26.6 3.7 25 321-345 3-27 (44)
390 PF12854 PPR_1: PPR repeat 77.4 5.4 0.00012 24.4 3.9 25 195-219 7-31 (34)
391 KOG0128 RNA-binding protein SA 76.8 1.2E+02 0.0026 33.1 22.1 107 153-262 105-220 (881)
392 PF13041 PPR_2: PPR repeat fam 75.6 9.5 0.00021 25.3 5.2 37 194-230 2-38 (50)
393 PF14863 Alkyl_sulf_dimr: Alky 75.3 21 0.00046 30.1 8.2 53 315-368 68-120 (141)
394 COG1747 Uncharacterized N-term 75.0 1.1E+02 0.0023 31.7 18.7 55 328-383 216-290 (711)
395 cd02682 MIT_AAA_Arch MIT: doma 74.0 7.4 0.00016 28.9 4.5 34 10-43 6-39 (75)
396 PF09670 Cas_Cas02710: CRISPR- 73.2 46 0.001 33.2 11.5 121 295-420 144-273 (379)
397 PF12854 PPR_1: PPR repeat 72.4 10 0.00022 23.1 4.3 24 353-376 8-31 (34)
398 COG4455 ImpE Protein of avirul 72.0 36 0.00078 31.0 9.1 57 326-383 10-66 (273)
399 PF11846 DUF3366: Domain of un 71.9 11 0.00024 33.5 6.2 52 296-349 125-176 (193)
400 KOG4014 Uncharacterized conser 71.1 75 0.0016 28.2 16.4 185 159-382 32-234 (248)
401 smart00299 CLH Clathrin heavy 70.3 60 0.0013 26.8 10.7 44 296-341 21-64 (140)
402 cd02681 MIT_calpain7_1 MIT: do 69.3 9.1 0.0002 28.5 4.1 32 11-42 7-38 (76)
403 PF13226 DUF4034: Domain of un 69.1 74 0.0016 30.1 11.1 132 170-334 9-150 (277)
404 PF04212 MIT: MIT (microtubule 68.4 9.3 0.0002 27.6 4.1 32 12-43 7-38 (69)
405 PF09205 DUF1955: Domain of un 68.0 40 0.00087 28.2 7.9 63 160-222 85-147 (161)
406 KOG0546 HSP90 co-chaperone CPR 67.8 4.4 9.6E-05 39.2 2.7 77 317-396 275-351 (372)
407 cd02679 MIT_spastin MIT: domai 67.6 12 0.00026 28.1 4.5 33 12-44 10-42 (79)
408 COG1747 Uncharacterized N-term 67.5 1.6E+02 0.0034 30.5 15.4 170 158-350 96-292 (711)
409 PF12309 KBP_C: KIF-1 binding 67.2 1.4E+02 0.003 29.7 14.1 120 296-423 196-344 (371)
410 PF00244 14-3-3: 14-3-3 protei 67.2 1.1E+02 0.0023 28.4 15.7 32 197-230 3-34 (236)
411 cd02682 MIT_AAA_Arch MIT: doma 66.9 28 0.0006 25.8 6.2 25 370-396 31-55 (75)
412 TIGR00756 PPR pentatricopeptid 65.9 13 0.00028 21.8 3.8 25 198-222 3-27 (35)
413 PF14863 Alkyl_sulf_dimr: Alky 65.7 29 0.00063 29.3 7.0 52 353-406 71-122 (141)
414 smart00101 14_3_3 14-3-3 homol 65.5 1.2E+02 0.0025 28.3 19.6 56 166-221 6-65 (244)
415 KOG2114 Vacuolar assembly/sort 65.4 70 0.0015 34.8 11.0 59 171-231 344-403 (933)
416 PF13041 PPR_2: PPR repeat fam 64.9 31 0.00068 22.7 5.9 29 353-381 4-32 (50)
417 cd02679 MIT_spastin MIT: domai 64.0 17 0.00036 27.3 4.6 33 297-345 4-36 (79)
418 cd02683 MIT_1 MIT: domain cont 64.0 12 0.00027 27.8 4.0 32 11-42 7-38 (77)
419 KOG0546 HSP90 co-chaperone CPR 62.8 7.6 0.00016 37.6 3.3 69 164-234 278-346 (372)
420 PF10255 Paf67: RNA polymerase 62.8 16 0.00035 36.5 5.7 51 295-345 135-192 (404)
421 KOG2581 26S proteasome regulat 62.1 57 0.0012 32.5 9.0 104 317-420 169-279 (493)
422 PF04212 MIT: MIT (microtubule 60.8 20 0.00043 25.8 4.6 29 393-421 10-38 (69)
423 PHA02537 M terminase endonucle 59.1 25 0.00055 32.3 5.9 21 241-261 92-112 (230)
424 KOG4279 Serine/threonine prote 58.9 92 0.002 33.6 10.3 187 194-396 200-405 (1226)
425 PF08238 Sel1: Sel1 repeat; I 58.4 21 0.00046 21.8 3.9 29 317-345 1-36 (39)
426 PF01535 PPR: PPR repeat; Int 58.2 15 0.00033 21.0 3.0 26 164-189 3-28 (31)
427 PF09670 Cas_Cas02710: CRISPR- 57.8 88 0.0019 31.2 10.0 61 199-261 135-198 (379)
428 smart00745 MIT Microtubule Int 56.6 26 0.00056 25.8 4.7 33 12-44 10-42 (77)
429 PF09797 NatB_MDM20: N-acetylt 56.3 80 0.0017 31.2 9.5 121 298-422 151-286 (365)
430 PF04348 LppC: LppC putative l 55.3 3.9 8.5E-05 42.8 0.0 115 304-420 11-130 (536)
431 cd02680 MIT_calpain7_2 MIT: do 53.9 22 0.00047 26.4 3.8 28 13-40 9-36 (75)
432 PF09205 DUF1955: Domain of un 53.8 66 0.0014 27.0 6.8 49 296-345 100-148 (161)
433 PF01239 PPTA: Protein prenylt 52.5 46 0.001 19.5 4.6 23 338-361 4-26 (31)
434 cd02681 MIT_calpain7_1 MIT: do 52.2 37 0.00081 25.2 4.8 26 395-420 13-38 (76)
435 cd02683 MIT_1 MIT: domain cont 52.2 30 0.00064 25.8 4.3 28 393-420 11-38 (77)
436 smart00671 SEL1 Sel1-like repe 51.9 30 0.00064 20.6 3.7 28 318-345 2-33 (36)
437 cd02678 MIT_VPS4 MIT: domain c 51.4 29 0.00062 25.6 4.1 32 11-42 7-38 (75)
438 PF11817 Foie-gras_1: Foie gra 49.1 1.4E+02 0.0031 27.6 9.4 72 6-90 174-245 (247)
439 PF11817 Foie-gras_1: Foie gra 49.0 97 0.0021 28.7 8.3 46 298-345 161-206 (247)
440 PF02184 HAT: HAT (Half-A-TPR) 48.7 38 0.00082 20.6 3.5 26 332-359 2-27 (32)
441 cd02684 MIT_2 MIT: domain cont 48.2 33 0.00071 25.4 4.0 31 12-42 8-38 (75)
442 KOG0292 Vesicle coat complex C 48.0 73 0.0016 35.0 7.7 89 294-383 1003-1115(1202)
443 cd02680 MIT_calpain7_2 MIT: do 47.9 40 0.00087 25.0 4.3 26 395-420 13-38 (75)
444 PF13812 PPR_3: Pentatricopept 47.3 40 0.00087 19.7 3.7 23 164-186 4-26 (34)
445 PRK15490 Vi polysaccharide bio 46.5 55 0.0012 34.4 6.6 56 163-220 44-99 (578)
446 KOG0276 Vesicle coat complex C 45.9 98 0.0021 32.5 8.1 98 133-256 648-745 (794)
447 COG4259 Uncharacterized protei 45.5 1.5E+02 0.0032 23.4 7.2 34 196-231 73-106 (121)
448 KOG0276 Vesicle coat complex C 45.4 1.7E+02 0.0036 30.9 9.6 72 298-380 623-694 (794)
449 KOG2997 F-box protein FBX9 [Ge 45.0 29 0.00063 33.3 4.0 38 297-350 15-52 (366)
450 PF09477 Type_III_YscG: Bacter 44.7 1.6E+02 0.0035 23.6 8.3 79 173-259 18-96 (116)
451 cd02656 MIT MIT: domain contai 44.4 42 0.00092 24.5 4.1 32 12-43 8-39 (75)
452 cd02678 MIT_VPS4 MIT: domain c 43.7 50 0.0011 24.3 4.4 28 393-420 11-38 (75)
453 COG5187 RPN7 26S proteasome re 42.7 3.1E+02 0.0068 26.3 11.6 117 299-415 92-219 (412)
454 smart00745 MIT Microtubule Int 42.2 57 0.0012 23.9 4.6 29 394-422 14-42 (77)
455 PF06957 COPI_C: Coatomer (COP 41.8 73 0.0016 32.2 6.4 24 199-222 208-231 (422)
456 COG5536 BET4 Protein prenyltra 41.7 2.3E+02 0.005 26.9 9.1 199 213-431 50-274 (328)
457 PF06957 COPI_C: Coatomer (COP 40.9 1.5E+02 0.0032 30.0 8.4 36 4-40 199-234 (422)
458 PF12739 TRAPPC-Trs85: ER-Golg 40.9 3.9E+02 0.0085 26.9 16.6 171 62-263 207-401 (414)
459 cd02656 MIT MIT: domain contai 40.8 71 0.0015 23.3 4.9 29 394-422 12-40 (75)
460 PF12739 TRAPPC-Trs85: ER-Golg 40.7 4E+02 0.0086 26.9 16.0 109 297-419 277-401 (414)
461 KOG4151 Myosin assembly protei 40.4 35 0.00075 36.7 4.1 87 295-383 66-158 (748)
462 cd02684 MIT_2 MIT: domain cont 39.8 74 0.0016 23.5 4.8 29 394-422 12-40 (75)
463 TIGR02710 CRISPR-associated pr 39.6 3.6E+02 0.0077 26.9 10.8 22 201-222 136-157 (380)
464 PF04190 DUF410: Protein of un 39.6 3.2E+02 0.007 25.5 18.3 81 298-381 73-170 (260)
465 COG5159 RPN6 26S proteasome re 39.1 3.6E+02 0.0077 25.9 16.7 205 167-416 9-234 (421)
466 COG4259 Uncharacterized protei 38.2 1.7E+02 0.0037 23.1 6.5 47 303-350 58-105 (121)
467 cd02677 MIT_SNX15 MIT: domain 37.5 82 0.0018 23.3 4.7 22 400-421 18-39 (75)
468 cd02677 MIT_SNX15 MIT: domain 37.4 55 0.0012 24.2 3.7 31 12-42 8-38 (75)
469 PF04097 Nic96: Nup93/Nic96; 37.0 5.5E+02 0.012 27.5 14.4 83 167-256 264-351 (613)
470 KOG2997 F-box protein FBX9 [Ge 36.5 39 0.00084 32.5 3.4 21 74-94 30-50 (366)
471 KOG2709 Uncharacterized conser 36.0 2E+02 0.0044 28.8 8.2 38 12-49 24-61 (560)
472 PRK15490 Vi polysaccharide bio 35.3 2.6E+02 0.0056 29.6 9.5 79 294-376 20-98 (578)
473 KOG0686 COP9 signalosome, subu 35.2 2.1E+02 0.0045 28.7 8.1 95 318-413 151-254 (466)
474 KOG1497 COP9 signalosome, subu 35.1 4.3E+02 0.0094 25.7 10.7 99 318-417 104-213 (399)
475 KOG4521 Nuclear pore complex, 35.0 7.7E+02 0.017 28.5 17.3 27 196-222 921-947 (1480)
476 PF07219 HemY_N: HemY protein 35.0 1.9E+02 0.0042 22.8 6.9 32 317-348 59-90 (108)
477 PF02064 MAS20: MAS20 protein 34.8 1E+02 0.0022 25.3 5.2 28 322-349 68-95 (121)
478 KOG1114 Tripeptidyl peptidase 34.8 7.1E+02 0.015 28.1 13.2 69 298-366 1212-1281(1304)
479 KOG1920 IkappaB kinase complex 34.4 7.8E+02 0.017 28.4 21.5 19 71-89 685-703 (1265)
480 PF12583 TPPII_N: Tripeptidyl 33.9 50 0.0011 27.3 3.2 34 203-238 84-117 (139)
481 PF09477 Type_III_YscG: Bacter 33.7 2.4E+02 0.0051 22.7 6.8 84 322-413 11-94 (116)
482 KOG1114 Tripeptidyl peptidase 33.3 7.5E+02 0.016 27.9 14.1 69 333-402 1212-1281(1304)
483 TIGR02710 CRISPR-associated pr 32.9 5.1E+02 0.011 25.9 12.0 124 295-422 143-280 (380)
484 KOG4563 Cell cycle-regulated h 31.9 78 0.0017 31.1 4.7 29 319-347 43-71 (400)
485 PF12753 Nro1: Nuclear pore co 31.8 1.8E+02 0.0038 29.1 7.2 68 248-321 334-401 (404)
486 KOG0292 Vesicle coat complex C 30.7 5.9E+02 0.013 28.4 11.1 25 166-190 996-1020(1202)
487 PF09797 NatB_MDM20: N-acetylt 30.7 1.4E+02 0.0031 29.4 6.7 46 297-343 198-243 (365)
488 PF07163 Pex26: Pex26 protein; 30.3 3.2E+02 0.007 26.0 8.2 63 64-145 119-181 (309)
489 PHA02537 M terminase endonucle 29.7 69 0.0015 29.4 3.8 24 295-319 96-119 (230)
490 KOG4279 Serine/threonine prote 29.5 67 0.0015 34.6 4.1 72 294-367 255-335 (1226)
491 TIGR02996 rpt_mate_G_obs repea 28.9 1.6E+02 0.0034 19.2 4.2 29 340-369 5-33 (42)
492 PF07219 HemY_N: HemY protein 28.7 2.1E+02 0.0046 22.6 6.2 44 357-402 64-107 (108)
493 cd00280 TRFH Telomeric Repeat 28.2 1.6E+02 0.0034 26.2 5.5 37 167-204 117-153 (200)
494 PF14852 Fis1_TPR_N: Fis1 N-te 27.9 91 0.002 19.3 3.0 29 318-346 2-33 (35)
495 PF13934 ELYS: Nuclear pore co 27.5 4.8E+02 0.01 23.8 9.8 100 301-412 65-164 (226)
496 PF04348 LppC: LppC putative l 27.5 20 0.00044 37.5 0.0 58 163-220 26-86 (536)
497 PF13934 ELYS: Nuclear pore co 27.4 3.5E+02 0.0075 24.7 8.1 78 133-222 89-167 (226)
498 PRK09687 putative lyase; Provi 27.3 5.4E+02 0.012 24.3 23.8 226 159-422 35-268 (280)
499 TIGR03362 VI_chp_7 type VI sec 27.0 5.7E+02 0.012 24.6 15.6 167 158-380 97-278 (301)
500 PF05053 Menin: Menin; InterP 26.8 2.5E+02 0.0055 29.4 7.5 49 333-382 295-348 (618)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-42 Score=337.52 Aligned_cols=369 Identities=17% Similarity=0.076 Sum_probs=325.3
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHH
Q 013398 3 IHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRET 82 (444)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA 82 (444)
+|..-.++|++-+.|..+.+.|++++|+..|+.+|+. .|. +.+|+-.+|.++..+|+.++|
T Consensus 109 ~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel--------~p~-----------fida~inla~al~~~~~~~~a 169 (966)
T KOG4626|consen 109 IRKNPQGAEAYSNLANILKERGQLQDALALYRAAIEL--------KPK-----------FIDAYINLAAALVTQGDLELA 169 (966)
T ss_pred hhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--------Cch-----------hhHHHhhHHHHHHhcCCCccc
Confidence 4455578999999999999999999999999999987 233 346788888999999999999
Q ss_pred HHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCC-----------CCCccc---cccCccccCCCcHHHHHHHHHHH
Q 013398 83 IMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGET-----------CPPNLR---SQMGSSFVPRNNIEEAILLLMIL 148 (444)
Q Consensus 83 ~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~eAi~~l~~~ 148 (444)
...|..+|++ +|+..- ....++.++-..|.-. ..|+.. ++++.+|..+|+...||.-+
T Consensus 170 ~~~~~~alql----nP~l~c-a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y--- 241 (966)
T KOG4626|consen 170 VQCFFEALQL----NPDLYC-ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHY--- 241 (966)
T ss_pred HHHHHHHHhc----Ccchhh-hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHH---
Confidence 9999999999 554321 1233444333222221 133332 46788999999999999875
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC
Q 013398 149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (444)
Q Consensus 149 ~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P 228 (444)
+.+++.+|+.+++|.+||++|...+.+++|+.+|.+|+.+.|+++.++-++|.+|+.+|..+-|+..|++|| .++|
T Consensus 242 --~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral--~~~P 317 (966)
T KOG4626|consen 242 --EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL--ELQP 317 (966)
T ss_pred --HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH--hcCC
Confidence 556789999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHH
Q 013398 229 KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (444)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a 308 (444)
+.+.++.+++.. +...|+..||+.+|.++|...|.+ +.+.++||.+|..+ +..++|...|+++
T Consensus 318 ~F~~Ay~NlanA-Lkd~G~V~ea~~cYnkaL~l~p~h-----adam~NLgni~~E~-----------~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 318 NFPDAYNNLANA-LKDKGSVTEAVDCYNKALRLCPNH-----ADAMNNLGNIYREQ-----------GKIEEATRLYLKA 380 (966)
T ss_pred CchHHHhHHHHH-HHhccchHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHh-----------ccchHHHHHHHHH
Confidence 999999988765 577899999999999999976654 67899999999776 5689999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013398 309 ARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (444)
Q Consensus 309 l~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~ 388 (444)
+ +..|+.+.++.|||.+|.++|++++|+.+|+.|++++|.. ++++.++|.+|..+|+.++|+++|.+||..+| ..+
T Consensus 381 l-~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f-Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nP--t~A 456 (966)
T KOG4626|consen 381 L-EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF-ADALSNMGNTYKEMGDVSAAIQCYTRAIQINP--TFA 456 (966)
T ss_pred H-hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH-HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc--HHH
Confidence 9 9999999999999999999999999999999999999999 69999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
+++.++|.++...|+..+|+..|+++|.+.||-.+
T Consensus 457 eAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 457 EAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 99999999999999999999999999999997665
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-40 Score=318.76 Aligned_cols=378 Identities=18% Similarity=0.118 Sum_probs=319.7
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHhhhc----------CCC-CC----CCCccccHHHHHHHHHHHHHHHHHHhC
Q 013398 13 IFLKAKCLQGLGRFKEAAQSCKVILDIVESSFA----------EGF-PE----NLGADCKLQETLNRAVELLPELWKLAD 77 (444)
Q Consensus 13 ~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~----------~~~-~~----~~~~~~~l~~~~~~a~~~l~~~~~~~g 77 (444)
....+--.++.|+|++|++-|.++-+..+...+ ++. .+ ....-++..+...+++-.+|+++...|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 345566778899999999999987544322110 000 00 001123445557889999999999999
Q ss_pred ChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCC-----------CCc---cccccCccccCCCcHHHHHH
Q 013398 78 APRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC-----------PPN---LRSQMGSSFVPRNNIEEAIL 143 (444)
Q Consensus 78 ~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~-----------~~~---~~~~~~~~~~~~~~~~eAi~ 143 (444)
++++|+..|+.++++ +|+....+ -++|..+..++.-.. .|. ..+..+.+...+|+.+||-.
T Consensus 131 ~~~~al~~y~~aiel----~p~fida~-inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 131 QLQDALALYRAAIEL----KPKFIDAY-INLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hHHHHHHHHHHHHhc----CchhhHHH-hhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999999 77665443 455666665543321 121 12456778888999999988
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhc
Q 013398 144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS 223 (444)
Q Consensus 144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~ 223 (444)
.++. ++...|...-+|.+||-++..+|+.-.|+..|++|++++|..+++|++||.+|...+.+++|+.+|.+|+
T Consensus 206 cYlk-----Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl- 279 (966)
T KOG4626|consen 206 CYLK-----AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL- 279 (966)
T ss_pred HHHH-----HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH-
Confidence 7643 4566799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHH
Q 013398 224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ 303 (444)
Q Consensus 224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~ 303 (444)
.+.|++..++-+++.+++. .|..+-||..|+++|+. .|+. ..|+.++|.++... |+..||..
T Consensus 280 -~lrpn~A~a~gNla~iYye-qG~ldlAI~~Ykral~~-~P~F----~~Ay~NlanALkd~-----------G~V~ea~~ 341 (966)
T KOG4626|consen 280 -NLRPNHAVAHGNLACIYYE-QGLLDLAIDTYKRALEL-QPNF----PDAYNNLANALKDK-----------GSVTEAVD 341 (966)
T ss_pred -hcCCcchhhccceEEEEec-cccHHHHHHHHHHHHhc-CCCc----hHHHhHHHHHHHhc-----------cchHHHHH
Confidence 9999999999988888765 68999999999999995 4543 57999999998765 56899999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 304 ALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 304 ~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
+|.+++ .+.|+++++.+|||.++.++|.+++|...|+++++..|+. +.++.+||.+|..+|++++|+.+|+.||.+.|
T Consensus 342 cYnkaL-~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~-aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 342 CYNKAL-RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF-AAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHHHHH-HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh-hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 999999 9999999999999999999999999999999999999999 59999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 384 KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 384 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
..+.++.++|..+..+|+.++|+++|.+++.++|--.+
T Consensus 420 --~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae 457 (966)
T KOG4626|consen 420 --TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE 457 (966)
T ss_pred --hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH
Confidence 89999999999999999999999999999998886554
No 3
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-36 Score=301.60 Aligned_cols=417 Identities=42% Similarity=0.616 Sum_probs=370.7
Q ss_pred CchhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChH
Q 013398 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPR 80 (444)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~ 80 (444)
|+-|..++..++-..+.+.+.+.|++.+|.+.|+.+|++.+.....+.+...+...++++.+.++...++.+|...+..+
T Consensus 165 ~s~~~~~Le~~l~~lk~k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~~~s~~~~l~~vl~~~~~~~~~Lw~~~~~~~ 244 (799)
T KOG4162|consen 165 MSAHGAILEAELIKLKAKSLKRLGRIQEAAEECRSVLDIVETKATQGSKDTESGALKLQEVLSRAVELLPILWKKLSGPK 244 (799)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhHHHhcCCCCch
Confidence 56688999999999999999999999999999999999999888777776544456788889999999999999999999
Q ss_pred HHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCC
Q 013398 81 ETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWD 160 (444)
Q Consensus 81 eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~ 160 (444)
+++..|++++..+|+.+|.....++..++.++..++.+.. ..-......+++.++.++++..++...++.-....-++
T Consensus 245 ~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd 322 (799)
T KOG4162|consen 245 EAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQND 322 (799)
T ss_pred HHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcch
Confidence 9999999999999999998777666666544433332221 00122345788888899998877666555555555689
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCC--CCChHHHHHHH
Q 013398 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSED--PKCLPALLIAS 238 (444)
Q Consensus 161 ~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~--P~~~~a~~~~~ 238 (444)
+.+|.++..++...|+++.+.++||+++...-+..+.|+.++.++...|..-.|+..+++.+ ... |+++..+++.+
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~--~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESL--KKSEQPSDISVLLMAS 400 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhc--ccccCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 677 99999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH
Q 013398 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (444)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~ 318 (444)
.+|+...+..++++.|..+++...........+.++..+|++|..+++.+..++.|...+.++++.+++++ +.+|+||.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av-~~d~~dp~ 479 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV-QFDPTDPL 479 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH-hcCCCCch
Confidence 99999999999999999999996655555677899999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013398 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~ 398 (444)
+.|+++.-|+.+++++.|+++.+++++++|.+...+|+.++.++..++|+.+|+..++.+++..| +|......+..+.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~--~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG--DNHVLMDGKIHIE 557 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh--hhhhhchhhhhhh
Confidence 99999999999999999999999999997776579999999999999999999999999999999 8999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013398 399 LVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 399 ~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
...++.++|+..+.+.|.+|.+.+++
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~ 583 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGV 583 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhH
Confidence 99999999999999999999966653
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.1e-32 Score=291.35 Aligned_cols=259 Identities=14% Similarity=0.049 Sum_probs=228.1
Q ss_pred CcHHHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCch
Q 013398 136 NNIEEAILLLMILLRKVALKR---IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDL 212 (444)
Q Consensus 136 ~~~~eAi~~l~~~~~~~~l~~---~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~ 212 (444)
+.+++|+..+ +.++.. .|....+|..+|.++...|++++|+..|++++.++|+++.+|+.+|.++...|+++
T Consensus 308 ~~y~~A~~~~-----~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 308 ESYEEAARAF-----EKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred hhHHHHHHHH-----HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence 4677887765 333433 47788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchH
Q 013398 213 VALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF 292 (444)
Q Consensus 213 ~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~ 292 (444)
+|+..|++++ ..+|+++.+++.+|.+++ ..|++++|+.+|++++++.|.+ ..+++.+|.++..+
T Consensus 383 eA~~~~~~al--~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~-----~~~~~~la~~~~~~-------- 446 (615)
T TIGR00990 383 KAEEDFDKAL--KLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDF-----IFSHIQLGVTQYKE-------- 446 (615)
T ss_pred HHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccC-----HHHHHHHHHHHHHC--------
Confidence 9999999999 899999999998888765 5799999999999999965543 46788999998764
Q ss_pred HHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHH------HHHHHHHH-Hc
Q 013398 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW------LLMARILS-AQ 365 (444)
Q Consensus 293 ~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~------~~la~~l~-~~ 365 (444)
|++++|+..|++++ ..+|+++.+++++|.++..+|++++|+..|+++++++|++. ..+ ...+.++. ..
T Consensus 447 ---g~~~eA~~~~~~al-~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 447 ---GSIASSMATFRRCK-KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALALFQWK 521 (615)
T ss_pred ---CCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHHHHHHh
Confidence 67999999999999 99999999999999999999999999999999999999853 332 33333443 46
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 366 g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
|++++|+..+++++.++| ++..++..+|.++..+|++++|+..|++++++.+...
T Consensus 522 ~~~~eA~~~~~kAl~l~p--~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDP--ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred hhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 999999999999999999 8889999999999999999999999999999987533
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=3.3e-31 Score=280.36 Aligned_cols=333 Identities=12% Similarity=-0.005 Sum_probs=283.4
Q ss_pred HhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCC
Q 013398 17 AKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNL 96 (444)
Q Consensus 17 g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~ 96 (444)
.+.+...|++++|...++.++.. .|.. ..++..+|.+....|++++|+..|+++++.
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~--------~p~~-----------~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~---- 105 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLT--------AKNG-----------RDLLRRWVISPLASSQPDAVLQVVNKLLAV---- 105 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHh--------CCCc-----------hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh----
Confidence 45566778999999999988876 3442 358889999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 013398 97 DAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGD 176 (444)
Q Consensus 97 ~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~ 176 (444)
+|.+... ...++. ++...|++++|+..+ +.++..+|+++.++..+|.++...|+
T Consensus 106 ~P~~~~a-~~~la~--------------------~l~~~g~~~~Ai~~l-----~~Al~l~P~~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 106 NVCQPED-VLLVAS--------------------VLLKSKQYATVADLA-----EQAWLAFSGNSQIFALHLRTLVLMDK 159 (656)
T ss_pred CCCChHH-HHHHHH--------------------HHHHcCCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 5554332 233343 334568899999886 55678889999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC-hHHHHHHHHHHhcCCCCHHHHHHHH
Q 013398 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-LPALLIASKICGEYPDLAEEGATFA 255 (444)
Q Consensus 177 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~-~~a~~~~~~~~~~~~~~~~eA~~~~ 255 (444)
+++|+..|++++...|+++.++..++ .+...|++++|+..+++++ ..+|.. ......++.+ +...|++++|+..+
T Consensus 160 ~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l--~~~~~~~~~~~~~l~~~-l~~~g~~~eA~~~~ 235 (656)
T PRK15174 160 ELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALL--PFFALERQESAGLAVDT-LCAVGKYQEAIQTG 235 (656)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHH--hcCCCcchhHHHHHHHH-HHHCCCHHHHHHHH
Confidence 99999999999999999999998875 4889999999999999999 777643 3333333333 45689999999999
Q ss_pred HHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 013398 256 SRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA----KALQALVSAARSTNMRDLSILYRLSLEYAEQR 331 (444)
Q Consensus 256 ~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~----eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g 331 (444)
+++++..|.+ ..+++.+|.++...| +++ +|+..|++++ +++|+++.++.++|.++...|
T Consensus 236 ~~al~~~p~~-----~~~~~~Lg~~l~~~G-----------~~~eA~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 236 ESALARGLDG-----AALRRSLGLAYYQSG-----------RSREAKLQAAEHWRHAL-QFNSDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHHhcCCCC-----HHHHHHHHHHHHHcC-----------CchhhHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHCC
Confidence 9999965433 578889999987764 455 4899999999 999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013398 332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY 411 (444)
Q Consensus 332 ~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~ 411 (444)
++++|+..++++++++|+++ .++.++|.++...|++++|+..|++++..+| ++...+..+|.++...|++++|+..|
T Consensus 299 ~~~eA~~~l~~al~l~P~~~-~a~~~La~~l~~~G~~~eA~~~l~~al~~~P--~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 299 QNEKAIPLLQQSLATHPDLP-YVRAMYARALRQVGQYTAASDEFVQLAREKG--VTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999994 9999999999999999999999999999999 78777777899999999999999999
Q ss_pred HHHHHHHHhhh
Q 013398 412 THLLAALQVQT 422 (444)
Q Consensus 412 ~~al~l~~~~~ 422 (444)
++++++.|++.
T Consensus 376 ~~al~~~P~~~ 386 (656)
T PRK15174 376 EHYIQARASHL 386 (656)
T ss_pred HHHHHhChhhc
Confidence 99999988764
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=9.9e-30 Score=285.62 Aligned_cols=353 Identities=17% Similarity=0.088 Sum_probs=258.5
Q ss_pred HHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCC
Q 013398 15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCW 94 (444)
Q Consensus 15 ~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~ 94 (444)
.+|.++...|++++|+..|+++++. .|.. ..++..+|.+|.+.|++++|+..|+++++.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~-----------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~-- 332 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRA--------NPKD-----------SEALGALGQAYSQQGDRARAVAQFEKALAL-- 332 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 4599999999999999999999987 3432 357888999999999999999999999998
Q ss_pred CCChHHH--HHHHHHHH--HHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013398 95 NLDAETT--AKLQKEFA--IFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (444)
Q Consensus 95 ~~~~~~~--~~l~~~~a--~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (444)
+|++. ..+...+. ..... ...+..+...|++++|+..+ +.++..+|+++.++..+|.+
T Consensus 333 --~p~~~~~~~~~~ll~~~~~~~~-----------~~~g~~~~~~g~~~eA~~~~-----~~Al~~~P~~~~a~~~Lg~~ 394 (1157)
T PRK11447 333 --DPHSSNRDKWESLLKVNRYWLL-----------IQQGDAALKANNLAQAERLY-----QQARQVDNTDSYAVLGLGDV 394 (1157)
T ss_pred --CCCccchhHHHHHHHhhhHHHH-----------HHHHHHHHHCCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHH
Confidence 33221 11100000 00000 00112345678899999876 55677889999999999999
Q ss_pred HHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH------------------------------------------HHHC
Q 013398 171 FSIAGDLSSLATQIEELLPGIINRKERYHILALC------------------------------------------YYGA 208 (444)
Q Consensus 171 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~------------------------------------------l~~~ 208 (444)
+...|++++|++.|+++++++|++..++..++.+ +...
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~ 474 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQ 474 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence 9999999999999999999999998887666554 4467
Q ss_pred CCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhh-----
Q 013398 209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSA----- 283 (444)
Q Consensus 209 g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~----- 283 (444)
|++++|+..|++++ +++|+++.+++.++.++. ..|++++|+..++++++..|.+.+ +++.+|..+..
T Consensus 475 g~~~eA~~~~~~Al--~~~P~~~~~~~~LA~~~~-~~G~~~~A~~~l~~al~~~P~~~~-----~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 475 GKWAQAAELQRQRL--ALDPGSVWLTYRLAQDLR-QAGQRSQADALMRRLAQQKPNDPE-----QVYAYGLYLSGSDRDR 546 (1157)
T ss_pred CCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHhCCCHH
Confidence 99999999999999 899999998888887754 578999999999999986554432 23333322211
Q ss_pred ---------------------------------------hhhhhh-------------------chHHHHhhHHHHHHHH
Q 013398 284 ---------------------------------------QSKVAI-------------------TDFDRATRQAKALQAL 305 (444)
Q Consensus 284 ---------------------------------------~~~~~~-------------------~~~~~~~~~~eA~~~~ 305 (444)
.++... ....+.|++++|++.|
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 111000 0113457778888888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 013398 306 VSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW 385 (444)
Q Consensus 306 ~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~ 385 (444)
++++ +++|+++.+++++|.++...|++++|++.|+++++.+|+++ .++..+|.++..+|++++|+..|++++...|+.
T Consensus 627 ~~al-~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 627 QRVL-TREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSL-NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCCh-HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 8888 78888888888888888888888888888888888888774 777778888888888888888888888776521
Q ss_pred -C---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013398 386 -E---QGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 386 -~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
. +..++..+|.++...|++++|+..|++++.
T Consensus 705 ~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 705 PPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0 224555667888888888888888888875
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=2.2e-29 Score=275.99 Aligned_cols=371 Identities=17% Similarity=0.121 Sum_probs=258.9
Q ss_pred HHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 013398 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (444)
Q Consensus 11 ~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL 90 (444)
..++..|.++...|++++|++.|.++++.. |.. ..++..++.++...|++++|+..|++++
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIE--------PDF-----------FPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--------CCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467778888888888888888888887652 221 1355566677777778888888887777
Q ss_pred CcCCCCChHHHHHHHHHHHHHHhhhcCCC------------CCCccc--cccCccccCCCcHHHHHHHHHHHHHHHHHhh
Q 013398 91 LPCWNLDAETTAKLQKEFAIFLLYCGGET------------CPPNLR--SQMGSSFVPRNNIEEAILLLMILLRKVALKR 156 (444)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~------------~~~~~~--~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~ 156 (444)
+. .|.+... ...++.++...+... .|.... ..++..+...|++++|+..+ +.++..
T Consensus 527 ~~----~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-----~~~~~~ 596 (899)
T TIGR02917 527 TI----DPKNLRA-ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL-----NEAADA 596 (899)
T ss_pred Hh----CcCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH-----HHHHHc
Confidence 76 3332211 122232222211110 111111 22344556677777777764 334556
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHH
Q 013398 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (444)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~ 236 (444)
.|.++.+|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++ ..+|++..++..
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~ 674 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL--ELKPDNTEAQIG 674 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHH
Confidence 677777777788888778888888888888877777777777778888877888888888888877 677777776666
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc----------------------hHHH
Q 013398 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT----------------------DFDR 294 (444)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~----------------------~~~~ 294 (444)
++.++ ...|++++|+..++++.+..|++ ...+..+|.++...++...+ ...+
T Consensus 675 l~~~~-~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 675 LAQLL-LAAKRTESAKKIAKSLQKQHPKA-----ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHhhCcCC-----hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 55554 33566666666666666643332 23445555555444332211 0123
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013398 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~ 374 (444)
.|++++|++.+++++ ..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..+|.++...|+ .+|+.+
T Consensus 749 ~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~-~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN-AVVLNNLAWLYLELKD-PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCc-HHHHHH
Confidence 567888888888888 8888888888888888888888888888888888888888 4888888888888888 788888
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 375 ~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
++++++..| +++..+..+|.++...|++++|+..|++++++.|.+..
T Consensus 826 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 872 (899)
T TIGR02917 826 AEKALKLAP--NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA 872 (899)
T ss_pred HHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Confidence 888888888 78888888888888888888888888888888776433
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=6.8e-29 Score=278.88 Aligned_cols=326 Identities=15% Similarity=0.025 Sum_probs=242.8
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHH----HHHHHHHHHHHHhCChHHHHHH
Q 013398 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLN----RAVELLPELWKLADAPRETIMS 85 (444)
Q Consensus 10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~----~a~~~l~~~~~~~g~~~eA~~~ 85 (444)
.++++.+|.++.+.|++++|+..|+++++.. |...... +....+. ......|.++...|++++|+..
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--------p~~~~~~-~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALD--------PHSSNRD-KWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCccchh-HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5788999999999999999999999999863 2211000 0000111 1223457788899999999999
Q ss_pred HHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHH--
Q 013398 86 YRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSI-- 163 (444)
Q Consensus 86 y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~-- 163 (444)
|+++++. +|.+... ...++.++. .+|++++|+..+ +.++..+|++..+
T Consensus 374 ~~~Al~~----~P~~~~a-~~~Lg~~~~--------------------~~g~~~eA~~~y-----~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 374 YQQARQV----DNTDSYA-VLGLGDVAM--------------------ARKDYAAAERYY-----QQALRMDPGNTNAVR 423 (1157)
T ss_pred HHHHHHh----CCCCHHH-HHHHHHHHH--------------------HCCCHHHHHHHH-----HHHHHhCCCCHHHHH
Confidence 9999998 4443321 233444333 234444554443 2233334444333
Q ss_pred ----------------------------------------HHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 013398 164 ----------------------------------------LDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILAL 203 (444)
Q Consensus 164 ----------------------------------------~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 203 (444)
+..+|.++...|++++|++.|+++++++|+++.+++.+|.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~ 503 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4455666778899999999999999999999999999999
Q ss_pred HHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----------------------
Q 013398 204 CYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALE----------------------- 260 (444)
Q Consensus 204 ~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~----------------------- 260 (444)
+|...|++++|+..|++++ ..+|+++.+++..+. ++...++.++|+..++++..
T Consensus 504 ~~~~~G~~~~A~~~l~~al--~~~P~~~~~~~a~al-~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLA--QQKPNDPEQVYAYGL-YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHH--HcCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999 899999998876653 45567788888777665321
Q ss_pred -----------------HcCCCcchhhhHHHHHhhhhhhhhhhhhhch-----------------------HHHHhhHHH
Q 013398 261 -----------------CLGDGCDQMESTANCLLGISLSAQSKVAITD-----------------------FDRATRQAK 300 (444)
Q Consensus 261 -----------------~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~-----------------------~~~~~~~~e 300 (444)
..|++ ...++.+|.++...++...+. ....|++++
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~-----~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPS-----TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCC-----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 11221 345677888877766543210 135689999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHHHccCHHHHHHHH
Q 013398 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL-----KGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 301 A~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-----~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
|++.|++++ +.+|+++.++..+|.++...|++++|++.|++++...|+++. ..+..+|.++..+|++++|+..|
T Consensus 656 A~~~l~~ll-~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 656 ARAQLAKLP-ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHHHHHh-ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999 999999999999999999999999999999999999877531 35667799999999999999999
Q ss_pred HHHHhhcC
Q 013398 376 NAALDQTG 383 (444)
Q Consensus 376 ~~al~~~P 383 (444)
++|+....
T Consensus 735 ~~Al~~~~ 742 (1157)
T PRK11447 735 KDAMVASG 742 (1157)
T ss_pred HHHHhhcC
Confidence 99987654
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=5.4e-29 Score=263.47 Aligned_cols=300 Identities=14% Similarity=0.084 Sum_probs=260.5
Q ss_pred HHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHH
Q 013398 70 PELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL 149 (444)
Q Consensus 70 ~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~ 149 (444)
...+++.|++++|+..++.++.. .|.+...+ ..++.. ....|++++|+..+
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~----~p~~~~~l-~~l~~~--------------------~l~~g~~~~A~~~l---- 99 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLT----AKNGRDLL-RRWVIS--------------------PLASSQPDAVLQVV---- 99 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHh----CCCchhHH-HHHhhh--------------------HhhcCCHHHHHHHH----
Confidence 34567999999999999999998 44443322 223221 22378899999876
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC
Q 013398 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (444)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~ 229 (444)
+.++..+|+++.++..+|.++...|++++|++.|+++++++|+++.+|..+|.++...|++++|+..+++++ ..+|+
T Consensus 100 -~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~--~~~P~ 176 (656)
T PRK15174 100 -NKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQA--QEVPP 176 (656)
T ss_pred -HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH--HhCCC
Confidence 567788999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHH
Q 013398 230 CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (444)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al 309 (444)
++.++...+ . +...|++++|+..++++++..+... ......+|.++.. .|++++|+..|++++
T Consensus 177 ~~~a~~~~~-~-l~~~g~~~eA~~~~~~~l~~~~~~~----~~~~~~l~~~l~~-----------~g~~~eA~~~~~~al 239 (656)
T PRK15174 177 RGDMIATCL-S-FLNKSRLPEDHDLARALLPFFALER----QESAGLAVDTLCA-----------VGKYQEAIQTGESAL 239 (656)
T ss_pred CHHHHHHHH-H-HHHcCCHHHHHHHHHHHHhcCCCcc----hhHHHHHHHHHHH-----------CCCHHHHHHHHHHHH
Confidence 998876543 3 4557999999999999998654332 1233445666644 367999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 013398 310 RSTNMRDLSILYRLSLEYAEQRKLNA----AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW 385 (444)
Q Consensus 310 ~~~~P~~~~a~~~lg~~~~~~g~~~~----A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~ 385 (444)
+++|+++.+++++|.++...|++++ |+..|+++++++|++ ..++..+|.++..+|++++|+..+++++.++|
T Consensus 240 -~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-- 315 (656)
T PRK15174 240 -ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-VRIVTLYADALIRTGQNEKAIPLLQQSLATHP-- 315 (656)
T ss_pred -hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--
Confidence 9999999999999999999999996 899999999999999 59999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
++..++.++|.++...|++++|+..|+++++..|++.
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 8999999999999999999999999999999888653
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=7.5e-29 Score=262.24 Aligned_cols=306 Identities=11% Similarity=-0.022 Sum_probs=254.8
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013398 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (444)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA 141 (444)
....+...|..+++.|++++|+..|+++|+. .|+.. ...+++. .|...|++++|
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~----~p~~~--~~~n~a~--------------------~~~~l~~~~~A 179 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC----KPDPV--YYSNRAA--------------------CHNALGDWEKV 179 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCchH--HHHHHHH--------------------HHHHhCCHHHH
Confidence 3456778899999999999999999999999 33311 2233343 34557889999
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC------------------------------
Q 013398 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI------------------------------ 191 (444)
Q Consensus 142 i~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~------------------------------ 191 (444)
+..+ ..++..+|++..+|+.+|.++...|++++|+..|..++..+
T Consensus 180 i~~~-----~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~ 254 (615)
T TIGR00990 180 VEDT-----TAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK 254 (615)
T ss_pred HHHH-----HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9875 55778899999999999999999999999998776554333
Q ss_pred CCCHHHHHH---------------------------------HHHHHH---HCCCchHHHHHHHHhhcCCC---CCCChH
Q 013398 192 INRKERYHI---------------------------------LALCYY---GAGEDLVALNLLRTLLSGSE---DPKCLP 232 (444)
Q Consensus 192 p~~~~~~~~---------------------------------la~~l~---~~g~~~~A~~~~~~al~~~~---~P~~~~ 232 (444)
|.+...+.. +|.... ..+++++|+..|++++ .. .|+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al--~~~~~~~~~a~ 332 (615)
T TIGR00990 255 PENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKAL--DLGKLGEKEAI 332 (615)
T ss_pred CCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH--hcCCCChhhHH
Confidence 222222222 222211 2368999999999999 55 477777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh
Q 013398 233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST 312 (444)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~ 312 (444)
++..+|.++ ...|++++|+..++++++..|.. ..+|+.+|.++... |++++|+..|++++ ++
T Consensus 333 a~~~lg~~~-~~~g~~~eA~~~~~kal~l~P~~-----~~~~~~la~~~~~~-----------g~~~eA~~~~~~al-~~ 394 (615)
T TIGR00990 333 ALNLRGTFK-CLKGKHLEALADLSKSIELDPRV-----TQSYIKRASMNLEL-----------GDPDKAEEDFDKAL-KL 394 (615)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-Hh
Confidence 888776664 45799999999999999964432 56888999988654 67999999999999 99
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013398 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (444)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~ 392 (444)
+|+++.+++++|.++...|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+..|++++..+| +++.+++
T Consensus 395 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~ 471 (615)
T TIGR00990 395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-IFSHIQLGVTQYKEGSIASSMATFRRCKKNFP--EAPDVYN 471 (615)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CChHHHH
Confidence 99999999999999999999999999999999999999 59999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013398 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
.+|.++..+|++++|+..|++++++.|+.
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999998864
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.2e-28 Score=268.07 Aligned_cols=370 Identities=16% Similarity=0.042 Sum_probs=261.2
Q ss_pred HHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 013398 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (444)
Q Consensus 11 ~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL 90 (444)
..++..|..+...|++++|+..++++++. .|.. ..++..+|.++...|++++|+..|++++
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPND-----------AEARFLLGKIYLALGDYAAAEKELRKAL 83 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45888999999999999999999999986 3442 3578889999999999999999999999
Q ss_pred CcCCCCChHHHHHHHHHHHHHHhhhcCCC------------CCCccc---cccCccccCCCcHHHHHHHHHHHHHHHHHh
Q 013398 91 LPCWNLDAETTAKLQKEFAIFLLYCGGET------------CPPNLR---SQMGSSFVPRNNIEEAILLLMILLRKVALK 155 (444)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~------------~~~~~~---~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~ 155 (444)
+. .|.+.. ....++..+...+... .++... ...+..+...|++++|+..+ +.++.
T Consensus 84 ~~----~~~~~~-~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-----~~a~~ 153 (899)
T TIGR02917 84 SL----GYPKNQ-VLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSY-----EQALA 153 (899)
T ss_pred Hc----CCChhh-hHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHH-----HHHHh
Confidence 98 332211 1223333333322111 011100 23455667788888888875 44567
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHH
Q 013398 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235 (444)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~ 235 (444)
.+|+++.++..++.++...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++.
T Consensus 154 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~--~~~p~~~~~~~ 231 (899)
T TIGR02917 154 IDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAI--ALRPNNPAVLL 231 (899)
T ss_pred cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--hhCCCCHHHHH
Confidence 7788888888888888888888888888888888888888888888888888888888888888888 78888888877
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc-----------------------hH
Q 013398 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT-----------------------DF 292 (444)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~-----------------------~~ 292 (444)
..+.++. ..|++++|...++++++..|.+ ..+++..|.++...++.... ..
T Consensus 232 ~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 305 (899)
T TIGR02917 232 ALATILI-EAGEFEEAEKHADALLKKAPNS-----PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASE 305 (899)
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHhCCCC-----chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 7766654 4678888888888888865543 23455555555443321100 01
Q ss_pred HHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHH
Q 013398 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (444)
Q Consensus 293 ~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~ 372 (444)
...|++++|+..|++++ ..+|+++.++..+|.++...|++++|+..+++++..+|.+ ...+..+|.++...|++++|+
T Consensus 306 ~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 306 YQLGNLEQAYQYLNQIL-KYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDD-PAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 23456666666666666 6666666666666666666677777777777776666666 366667777777777777777
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013398 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 373 ~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
.+++++++..| ++..++..+|.++...|++++|+..+++++++.|+.
T Consensus 384 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 430 (899)
T TIGR02917 384 EYLAKATELDP--ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL 430 (899)
T ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc
Confidence 77777777777 666667777777777777777777777776665543
No 12
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=4.1e-25 Score=238.42 Aligned_cols=349 Identities=13% Similarity=-0.010 Sum_probs=238.3
Q ss_pred HHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 013398 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (444)
Q Consensus 11 ~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL 90 (444)
.++...|.++...|++++|++.|+++|+. .|.+ ..+...++.++...|++++|+..+++++
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~-----------~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQN-----------DDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44666677777777777777777777665 2332 1244455666667777777777777777
Q ss_pred CcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013398 91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (444)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (444)
+. +|++.. ...++. ++...|++++|+..+ +.++...|+++.++..++.+
T Consensus 111 ~~----~P~~~~--~~~la~--------------------~l~~~g~~~~Al~~l-----~~al~~~P~~~~~~~~la~~ 159 (765)
T PRK10049 111 SG----APDKAN--LLALAY--------------------VYKRAGRHWDELRAM-----TQALPRAPQTQQYPTEYVQA 159 (765)
T ss_pred Hh----CCCCHH--HHHHHH--------------------HHHHCCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHH
Confidence 76 444332 122232 233456677777664 44566677777777777777
Q ss_pred HHhcCCHHHHH----------------------------------------------HHHHhhcCCCCCCHHH-------
Q 013398 171 FSIAGDLSSLA----------------------------------------------TQIEELLPGIINRKER------- 197 (444)
Q Consensus 171 l~~~g~~~~A~----------------------------------------------~~~~~al~~~p~~~~~------- 197 (444)
+...|+.++|+ +.|+++++..|.+++.
T Consensus 160 l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred HHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 76655555444 3333444322222211
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHH
Q 013398 198 YHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCL 276 (444)
Q Consensus 198 ~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~-a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~ 276 (444)
++.....++..|++++|+..|++++ +..|+.|. +...++.++ ...|++++|+..|+++++. ++.........+..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll--~~~~~~P~~a~~~la~~y-l~~g~~e~A~~~l~~~l~~-~p~~~~~~~~~~~~ 315 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLK--AEGQIIPPWAQRWVASAY-LKLHQPEKAQSILTELFYH-PETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHH-HhcCCcHHHHHHHHHHhhc-CCCCCCCChHHHHH
Confidence 1121223456677888888888877 55432221 222234443 3467788888888887763 32210000123333
Q ss_pred hhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC-------------C--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 013398 277 LGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-------------D--LSILYRLSLEYAEQRKLNAAHYYAK 341 (444)
Q Consensus 277 lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~-------------~--~~a~~~lg~~~~~~g~~~~A~~~~~ 341 (444)
++.++. ..+++++|+..++++. ..+|. + ..++..+|.++...|++++|++.++
T Consensus 316 L~~a~~-----------~~g~~~eA~~~l~~~~-~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 316 LFYSLL-----------ESENYPGALTVTAHTI-NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred HHHHHH-----------hcccHHHHHHHHHHHh-hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444443 3478999999999999 88873 2 4578899999999999999999999
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013398 342 MLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 342 ~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
+++...|++ ..++..+|.++...|++++|+..+++++.++| ++..+++.+|.+...+|++++|+..++++++..|+.
T Consensus 384 ~al~~~P~n-~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P--d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 384 ELAYNAPGN-QGLRIDYASVLQARGWPRAAENELKKAEVLEP--RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 999999999 59999999999999999999999999999999 999999999999999999999999999999999988
Q ss_pred hhhccCc
Q 013398 422 TKTFSSD 428 (444)
Q Consensus 422 ~~~~~~~ 428 (444)
..+...+
T Consensus 461 ~~~~~~~ 467 (765)
T PRK10049 461 PGVQRLA 467 (765)
T ss_pred HHHHHHH
Confidence 7765443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=5e-25 Score=239.01 Aligned_cols=329 Identities=12% Similarity=-0.010 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCc-c-----ccCCC
Q 013398 63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGS-S-----FVPRN 136 (444)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~-~-----~~~~~ 136 (444)
..++..++-...+.|+.++|...|+.++..+. +..-+..+...++.++........+... ..++. + -.-.|
T Consensus 376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~ 452 (987)
T PRK09782 376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQG--DARLSQTLMARLASLLESHPYLATPAKV-AILSKPLPLAEQRQWQS 452 (987)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc--ccccCHHHHHHHHHHHHhCCcccchHHH-HHhccccccchhHHHHh
Confidence 35777777788999999999999999998621 1111122444555554443321111100 00000 0 00012
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHH
Q 013398 137 NIEEAILLLMILLRKVALKRIEW--DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVA 214 (444)
Q Consensus 137 ~~~eAi~~l~~~~~~~~l~~~p~--~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A 214 (444)
++.++..... ....++...|. ++.+|+++|.++.. |++++|+.+|.+++...|++. .+..+|.++...|++++|
T Consensus 453 ~~~~~~~~~~--~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 453 QLPGIADNCP--AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATA 528 (987)
T ss_pred hhhhhhhhHH--HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHH
Confidence 2222111110 01234455566 78888888888876 788888888888888888654 355567777788888888
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHH
Q 013398 215 LNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDR 294 (444)
Q Consensus 215 ~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~ 294 (444)
+..|++++ ...|.+ ..++.++.++. ..|++++|+.+++++++..|+. ...+..++.... +
T Consensus 529 i~~~rka~--~~~p~~-~a~~~la~all-~~Gd~~eA~~~l~qAL~l~P~~-----~~l~~~La~~l~-----------~ 588 (987)
T PRK09782 529 LAAWQKIS--LHDMSN-EDLLAAANTAQ-AAGNGAARDRWLQQAEQRGLGD-----NALYWWLHAQRY-----------I 588 (987)
T ss_pred HHHHHHHh--ccCCCc-HHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHH-----------h
Confidence 88888877 555554 34555555543 4678888888888888754332 122222322221 2
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013398 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~ 374 (444)
.|++++|+..|++++ +++|+ +.+++++|.++.+.|++++|+..|+++++++|++ ..++.++|.++...|++++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL-~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~-~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSL-NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN-SNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHH-HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 367888888888888 88885 8888888888888888888888888888888888 48888888888888888888888
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 375 ~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
|+++++.+| +++.+++++|.++..+|++++|+..|++++++.|+...
T Consensus 666 l~~AL~l~P--~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 666 LERAHKGLP--DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 888888888 78888888888888888888888888888888775543
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=6e-25 Score=219.89 Aligned_cols=299 Identities=18% Similarity=0.120 Sum_probs=226.9
Q ss_pred HHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHH
Q 013398 70 PELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL 149 (444)
Q Consensus 70 ~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~ 149 (444)
|..+...|++++|+..|+++++. +|.+.. ....++. ++...|++++|+..+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~----~p~~~~-~~~~la~--------------------~~~~~g~~~~A~~~~---- 92 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKV----DPETVE-LHLALGN--------------------LFRRRGEVDRAIRIH---- 92 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhc----CcccHH-HHHHHHH--------------------HHHHcCcHHHHHHHH----
Confidence 44555666666666666666666 443321 1122222 223345666666553
Q ss_pred HHHHHhhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCC
Q 013398 150 RKVALKRIEWD----PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGS 225 (444)
Q Consensus 150 ~~~~l~~~p~~----~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~ 225 (444)
+.++...+.. ..++..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++ .
T Consensus 93 -~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--~ 169 (389)
T PRK11788 93 -QNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE--K 169 (389)
T ss_pred -HHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH--H
Confidence 2222321111 24678899999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCCCChH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHH
Q 013398 226 EDPKCLP-----ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300 (444)
Q Consensus 226 ~~P~~~~-----a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~e 300 (444)
.+|++.. .+..++.++ ...|++++|+.+++++++..|.. ..+++.+|.++... |++++
T Consensus 170 ~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~-----------g~~~~ 232 (389)
T PRK11788 170 LGGDSLRVEIAHFYCELAQQA-LARGDLDAARALLKKALAADPQC-----VRASILLGDLALAQ-----------GDYAA 232 (389)
T ss_pred hcCCcchHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHhHCcCC-----HHHHHHHHHHHHHC-----------CCHHH
Confidence 7777543 233444443 45789999999999999965432 46788899888664 67899
Q ss_pred HHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013398 301 ALQALVSAARSTNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (444)
Q Consensus 301 A~~~~~~al~~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al 379 (444)
|++.|++++ ..+|++ ..++..++.++...|++++|+..++++++.+|+. ..+..++.++..+|++++|+..+++++
T Consensus 233 A~~~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 233 AIEALERVE-EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA--DLLLALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred HHHHHHHHH-HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999 999987 4678899999999999999999999999999986 445889999999999999999999999
Q ss_pred hhcCCCCcHHHHHHHHHHHHH--hCCHHHHHHHHHHHHH--HHHhhh
Q 013398 380 DQTGKWEQGELLRTKAKVQLV--QGQLKGAVETYTHLLA--ALQVQT 422 (444)
Q Consensus 380 ~~~P~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~--l~~~~~ 422 (444)
+..| ++..+...++..... .|+.++++..+++.++ +.++..
T Consensus 310 ~~~P--~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 310 RRHP--SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhCc--CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 9999 776655444433322 5689999999999986 444433
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=7.6e-25 Score=236.33 Aligned_cols=333 Identities=12% Similarity=-0.014 Sum_probs=256.7
Q ss_pred hhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCCh
Q 013398 19 CLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDA 98 (444)
Q Consensus 19 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~ 98 (444)
...-.|++++|++.|.+++.. .|.. ..++..++.++...|++++|+..|+++++. +|
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~--------~~~~-----------a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P 80 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVH--------MQLP-----------ARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EP 80 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC
Confidence 445679999999999887753 1221 246888899999999999999999999999 55
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHH
Q 013398 99 ETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLS 178 (444)
Q Consensus 99 ~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~ 178 (444)
.+... ...++.. +...|++++|+..+ +.++...|+++. +..+|.++...|+++
T Consensus 81 ~~~~a-~~~la~~--------------------l~~~g~~~eA~~~l-----~~~l~~~P~~~~-~~~la~~l~~~g~~~ 133 (765)
T PRK10049 81 QNDDY-QRGLILT--------------------LADAGQYDEALVKA-----KQLVSGAPDKAN-LLALAYVYKRAGRHW 133 (765)
T ss_pred CCHHH-HHHHHHH--------------------HHHCCCHHHHHHHH-----HHHHHhCCCCHH-HHHHHHHHHHCCCHH
Confidence 54332 2334433 33467899999876 556788999999 999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC----------------------------
Q 013398 179 SLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC---------------------------- 230 (444)
Q Consensus 179 ~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~---------------------------- 230 (444)
+|+..|+++++.+|+++++++.+|.++...|+.++|+..++++. . +|+.
T Consensus 134 ~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~--~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~ 210 (765)
T PRK10049 134 DELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN--L-TPAEKRDLEADAAAELVRLSFMPTRSEKERYA 210 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC--C-CHHHHHHHHHHHHHHHHHhhcccccChhHHHH
Confidence 99999999999999999999999999998888887776666555 3 3332
Q ss_pred -------------------hHH-------HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhh
Q 013398 231 -------------------LPA-------LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (444)
Q Consensus 231 -------------------~~a-------~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 284 (444)
+.. .+...+.++ ..|++++|+..|+++++..++.+ ..+...+|.+|..
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll-~~g~~~eA~~~~~~ll~~~~~~P----~~a~~~la~~yl~- 284 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALL-ARDRYKDVISEYQRLKAEGQIIP----PWAQRWVASAYLK- 284 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH-HhhhHHHHHHHHHHhhccCCCCC----HHHHHHHHHHHHh-
Confidence 111 000011122 23555666666666555321111 1122223444433
Q ss_pred hhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC----------
Q 013398 285 SKVAITDFDRATRQAKALQALVSAARSTNMRD----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---------- 350 (444)
Q Consensus 285 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------- 350 (444)
.+++++|+..|++++ +.+|.+ ......++.++.++|++++|+..++++...+|..
T Consensus 285 ----------~g~~e~A~~~l~~~l-~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 285 ----------LHQPEKAQSILTELF-YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred ----------cCCcHHHHHHHHHHh-hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 478999999999999 999887 4567888889999999999999999999998731
Q ss_pred ---C-hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 351 ---N-LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 351 ---~-~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
. ..++..+|.++...|++++|+..+++++...| ++..+++.+|.++...|++++|++.+++++++.|++..
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P--~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP--GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 1 24678899999999999999999999999999 89999999999999999999999999999999998744
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=8.6e-25 Score=237.16 Aligned_cols=256 Identities=9% Similarity=-0.059 Sum_probs=223.5
Q ss_pred CcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHH
Q 013398 136 NNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVAL 215 (444)
Q Consensus 136 ~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~ 215 (444)
+++++|+..+ ..++...|++. ....+|.++...|++++|+..|++++...|. ...++.+|.++...|++++|+
T Consensus 490 ~~~~eAi~a~-----~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~ 562 (987)
T PRK09782 490 TLPGVALYAW-----LQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARD 562 (987)
T ss_pred CCcHHHHHHH-----HHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHH
Confidence 5788898865 33446668654 3445566777999999999999999887555 466899999999999999999
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHH
Q 013398 216 NLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRA 295 (444)
Q Consensus 216 ~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~ 295 (444)
..|++++ ..+|++......++.. ....|++++|+..|+++++..| + ..+++.+|.++.+.
T Consensus 563 ~~l~qAL--~l~P~~~~l~~~La~~-l~~~Gr~~eAl~~~~~AL~l~P-~-----~~a~~~LA~~l~~l----------- 622 (987)
T PRK09782 563 RWLQQAE--QRGLGDNALYWWLHAQ-RYIPGQPELALNDLTRSLNIAP-S-----ANAYVARATIYRQR----------- 622 (987)
T ss_pred HHHHHHH--hcCCccHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHhCC-C-----HHHHHHHHHHHHHC-----------
Confidence 9999999 8999987766544332 2346999999999999999654 3 35789999988764
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013398 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
|++++|+..|++++ .++|+++.+++++|.++...|++++|+..|+++++++|+++ .++.++|.++..+|++++|+.++
T Consensus 623 G~~deA~~~l~~AL-~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~-~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 623 HNVPAAVSDLRAAL-ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP-ALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHH
Confidence 67999999999999 99999999999999999999999999999999999999995 99999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 376 ~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
++++++.| ++..+.+..|.+.....+++.|.+.|+++..+.++-.
T Consensus 701 ~~Al~l~P--~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 701 RLVIDDID--NQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHhcCC--CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999 8999999999999999999999999999999888655
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.9e-26 Score=227.48 Aligned_cols=248 Identities=14% Similarity=0.055 Sum_probs=227.5
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------------------------------cCCCCCCHHHH
Q 013398 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEEL----------------------------------LPGIINRKERY 198 (444)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~a----------------------------------l~~~p~~~~~~ 198 (444)
.-...++-.++..++|.+|+++++|++|..+|+.+ +..+|+.|+.|
T Consensus 345 lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesW 424 (638)
T KOG1126|consen 345 LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESW 424 (638)
T ss_pred hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHH
Confidence 33455677789999999999999999999999988 34488999999
Q ss_pred HHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013398 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (444)
Q Consensus 199 ~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg 278 (444)
..+|.+|--+++++.|+++|++|+ ++||++..+|.++|--. .....+|.|..+|+++|...|.+ ..||+-+|
T Consensus 425 ca~GNcfSLQkdh~~Aik~f~RAi--Qldp~faYayTLlGhE~-~~~ee~d~a~~~fr~Al~~~~rh-----YnAwYGlG 496 (638)
T KOG1126|consen 425 CALGNCFSLQKDHDTAIKCFKRAI--QLDPRFAYAYTLLGHES-IATEEFDKAMKSFRKALGVDPRH-----YNAWYGLG 496 (638)
T ss_pred HHhcchhhhhhHHHHHHHHHHHhh--ccCCccchhhhhcCChh-hhhHHHHhHHHHHHhhhcCCchh-----hHHHHhhh
Confidence 999999999999999999999999 99999999988766543 34678999999999999965543 68999999
Q ss_pred hhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013398 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (444)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (444)
++|.++ ++++.|.-.|++|+ .++|.|......+|.++.+.|+.++|+..|++|+.++|.++ -+.+..
T Consensus 497 ~vy~Kq-----------ek~e~Ae~~fqkA~-~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~-l~~~~~ 563 (638)
T KOG1126|consen 497 TVYLKQ-----------EKLEFAEFHFQKAV-EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP-LCKYHR 563 (638)
T ss_pred hheecc-----------chhhHHHHHHHhhh-cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc-hhHHHH
Confidence 999876 57899999999999 99999999999999999999999999999999999999996 999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 359 a~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
|.+++..++|++|+..+++.-++.| +...+++.+|.++.++|+.+-|+..|.-|.++.|+..+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP--~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVP--QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCc--chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 9999999999999999999999999 89999999999999999999999999999999997665
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.8e-24 Score=221.74 Aligned_cols=382 Identities=16% Similarity=0.119 Sum_probs=289.6
Q ss_pred HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 013398 8 LLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYR 87 (444)
Q Consensus 8 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~ 87 (444)
+.++.+|+.|.+|..+|+|++|-..|..+++.. ++++ .-++..+|..|+..|.+++|+..|+
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--------~d~~----------~l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--------NDNF----------VLPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--------CCCc----------cccccchhHHHHHhchHHHHHHHHH
Confidence 668999999999999999999999999998762 3322 1245667889999999999999999
Q ss_pred HHhCcCCCCChHHHHHHHHHHH----------------HHHhhhcCCCCCCccc--cccCccccCCCcHHHHHHHHHHHH
Q 013398 88 RALLPCWNLDAETTAKLQKEFA----------------IFLLYCGGETCPPNLR--SQMGSSFVPRNNIEEAILLLMILL 149 (444)
Q Consensus 88 ~aL~~~~~~~~~~~~~l~~~~a----------------~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~eAi~~l~~~~ 149 (444)
++++. .|.+... ..-++ ..++....+..|.+.. ..++.++.. ++...++..+..+.
T Consensus 367 kv~k~----~p~~~et-m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 367 KVLKQ----LPNNYET-MKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNAL 440 (1018)
T ss_pred HHHHh----CcchHHH-HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHH
Confidence 99998 3333221 11222 2222222222222211 112223332 23323344433221
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC-----CCCC-----HHHHHHHHHHHHHCCCchHHHHHHH
Q 013398 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG-----IINR-----KERYHILALCYYGAGEDLVALNLLR 219 (444)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~l~~~g~~~~A~~~~~ 219 (444)
.-..-...+--+++.+++|..++..|++++|...|.+|+.. +++. ...-||+|.++..+++++.|...|+
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 11111222346889999999999999999999999999877 2222 2358999999999999999999999
Q ss_pred HhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhh----------
Q 013398 220 TLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI---------- 289 (444)
Q Consensus 220 ~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~---------- 289 (444)
..+ +..|+++.+++.+|.+. +..+...+|..+++.++.....+ ..++.++|..+........
T Consensus 521 ~Il--kehp~YId~ylRl~~ma-~~k~~~~ea~~~lk~~l~~d~~n-----p~arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 521 SIL--KEHPGYIDAYLRLGCMA-RDKNNLYEASLLLKDALNIDSSN-----PNARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HHH--HHCchhHHHHHHhhHHH-HhccCcHHHHHHHHHHHhcccCC-----cHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 999 89999999999887554 45678889999999999965554 3567777765554321110
Q ss_pred -------ch--------------------HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013398 290 -------TD--------------------FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKM 342 (444)
Q Consensus 290 -------~~--------------------~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 342 (444)
++ -...+.+++|++.|.+++ +.+|.|.-+-+.+|.+++..|++.+|+..|.+
T Consensus 593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL-~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL-RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH-hcCcchhhhccchhhhhhhccCchHHHHHHHH
Confidence 00 013567899999999999 99999999999999999999999999999999
Q ss_pred HHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 343 LLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 343 al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
+.+--.++. .+|.++|.|+..+|+|-.|+..|+.+++.+-..++.+++..+|.++.+.|++.+|.++...++.+.|+++
T Consensus 672 VrEa~~~~~-dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 672 VREATSDFE-DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred HHHHHhhCC-ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence 988777775 9999999999999999999999999997653336899999999999999999999999999999988776
Q ss_pred h
Q 013398 423 K 423 (444)
Q Consensus 423 ~ 423 (444)
.
T Consensus 751 ~ 751 (1018)
T KOG2002|consen 751 S 751 (1018)
T ss_pred h
Confidence 5
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=2.7e-24 Score=215.21 Aligned_cols=269 Identities=17% Similarity=-0.001 Sum_probs=231.1
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHH
Q 013398 132 FVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR----KERYHILALCYYG 207 (444)
Q Consensus 132 ~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~ 207 (444)
+...|++++|+..+ +.++..+|+++.++..+|.++...|++++|+..+++++...+.. ..+++.+|.+|..
T Consensus 45 ~~~~~~~~~A~~~~-----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 45 FLLNEQPDKAIDLF-----IEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHhcCChHHHHHHH-----HHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44567899999886 45667889999999999999999999999999999999864332 3678999999999
Q ss_pred CCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhh
Q 013398 208 AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV 287 (444)
Q Consensus 208 ~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~ 287 (444)
.|++++|+..|++++ ..+|.+..++..++.++. ..|++++|+..++++++..+.+........+..+|.++...
T Consensus 120 ~g~~~~A~~~~~~~l--~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--- 193 (389)
T PRK11788 120 AGLLDRAEELFLQLV--DEGDFAEGALQQLLEIYQ-QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR--- 193 (389)
T ss_pred CCCHHHHHHHHHHHH--cCCcchHHHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC---
Confidence 999999999999999 889999988888887764 47899999999999998654332212233455677766543
Q ss_pred hhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC
Q 013398 288 AITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (444)
Q Consensus 288 ~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~ 367 (444)
+++++|+..|++++ +.+|++..+++.+|.++...|++++|++.+++++..+|++...++..++.++...|+
T Consensus 194 --------~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 194 --------GDLDAARALLKKAL-AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred --------CCHHHHHHHHHHHH-hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 67999999999999 999999999999999999999999999999999999998633678899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 368 YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 368 ~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
+++|+..++++++..| +... +..++.++...|++++|+..++++++..|+...
T Consensus 265 ~~~A~~~l~~~~~~~p--~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 265 EAEGLEFLRRALEEYP--GADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred HHHHHHHHHHHHHhCC--CchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH
Confidence 9999999999999999 6644 488999999999999999999999999887653
No 20
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.4e-23 Score=196.60 Aligned_cols=240 Identities=13% Similarity=0.080 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013398 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (444)
Q Consensus 161 ~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (444)
..++.+.|..+.-.|++-.|.+.|+.+|.++|.+...|..+|.+|....+.++-...|.+|. ++||+++.+|+..|.+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~--~ldp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAE--DLDPENPDVYYHRGQM 403 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHH--hcCCCCCchhHhHHHH
Confidence 45677788888899999999999999999999999999999999999999999999999999 9999999999999888
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013398 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (444)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~ 320 (444)
.+- ++++++|+.-|++++++.|.+ ..++..++.+..++ ++++++...|+.+. +.-|+.++++
T Consensus 404 ~fl-L~q~e~A~aDF~Kai~L~pe~-----~~~~iQl~~a~Yr~-----------~k~~~~m~~Fee~k-kkFP~~~Evy 465 (606)
T KOG0547|consen 404 RFL-LQQYEEAIADFQKAISLDPEN-----AYAYIQLCCALYRQ-----------HKIAESMKTFEEAK-KKFPNCPEVY 465 (606)
T ss_pred HHH-HHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH-HhCCCCchHH
Confidence 654 689999999999999965543 56788888877665 56899999999999 9999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCC------CChHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013398 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGG------SNLKGWLLMARILSA-QKRYEDAETILNAALDQTGKWEQGELLRT 393 (444)
Q Consensus 321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~~~~~~la~~l~~-~g~~~eA~~~~~~al~~~P~~~~~~~~~~ 393 (444)
...|.++..++++++|++.|.+|++|.|. ++ ..+.+.|.+... .+++..|+..+++|++++| .-..++..
T Consensus 466 ~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~-~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp--kce~A~~t 542 (606)
T KOG0547|consen 466 NLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA-APLVHKALLVLQWKEDINQAENLLRKAIELDP--KCEQAYET 542 (606)
T ss_pred HHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc-hhhhhhhHhhhchhhhHHHHHHHHHHHHccCc--hHHHHHHH
Confidence 99999999999999999999999999999 53 556666655432 3889999999999999999 78899999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
+|.+..++|+.++|++.|++++.+.....+
T Consensus 543 laq~~lQ~~~i~eAielFEksa~lArt~~E 572 (606)
T KOG0547|consen 543 LAQFELQRGKIDEAIELFEKSAQLARTESE 572 (606)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999988765443
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3e-23 Score=206.19 Aligned_cols=307 Identities=16% Similarity=0.052 Sum_probs=248.3
Q ss_pred HHHHHHHHHHHhhhhccc--chHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHH
Q 013398 7 SLLLEAIFLKAKCLQGLG--RFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIM 84 (444)
Q Consensus 7 ~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~ 84 (444)
..+.+.+...|+-+..+- +.++|+..|.. + |...+.. .-++-++|..|+..+++++|..
T Consensus 314 ~~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-l-------p~h~~nt-----------~wvl~q~GrayFEl~~Y~~a~~ 374 (638)
T KOG1126|consen 314 SELMELLRGLGEGYRSLSQYNCREALNLFEK-L-------PSHHYNT-----------GWVLSQLGRAYFELIEYDQAER 374 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------HHhcCCc-----------hHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666555554 34466666655 2 2222321 1378889999999999999999
Q ss_pred HHHHHhCcCCCCChHHHHHH-HHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 013398 85 SYRRALLPCWNLDAETTAKL-QKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSI 163 (444)
Q Consensus 85 ~y~~aL~~~~~~~~~~~~~l-~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~ 163 (444)
+|+.+-++ +|-..... ..--..+++.. +=++.. +.+..+..+|+.|+.
T Consensus 375 ~F~~~r~~----~p~rv~~meiyST~LWHLq~-----------------------~v~Ls~----Laq~Li~~~~~sPes 423 (638)
T KOG1126|consen 375 IFSLVRRI----EPYRVKGMEIYSTTLWHLQD-----------------------EVALSY----LAQDLIDTDPNSPES 423 (638)
T ss_pred HHHHHHhh----ccccccchhHHHHHHHHHHh-----------------------hHHHHH----HHHHHHhhCCCCcHH
Confidence 99999888 44211000 00001111110 011111 134556888999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhc
Q 013398 164 LDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243 (444)
Q Consensus 164 ~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~ 243 (444)
|--+|+.+..+++++.|+.+|+||++++|+.+-+|-.+|.-+..+..+|.|..+|++|| ..+|++..||+-+|-+++
T Consensus 424 Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al--~~~~rhYnAwYGlG~vy~- 500 (638)
T KOG1126|consen 424 WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL--GVDPRHYNAWYGLGTVYL- 500 (638)
T ss_pred HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh--cCCchhhHHHHhhhhhee-
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999998888865
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013398 244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL 323 (444)
Q Consensus 244 ~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l 323 (444)
+.++++.|.-+|++|+++.|.+ ......+|..+.+. ++.++|+..|++|+ .+||.|+...|+.
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~n-----svi~~~~g~~~~~~-----------k~~d~AL~~~~~A~-~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPSN-----SVILCHIGRIQHQL-----------KRKDKALQLYEKAI-HLDPKNPLCKYHR 563 (638)
T ss_pred ccchhhHHHHHHHhhhcCCccc-----hhHHhhhhHHHHHh-----------hhhhHHHHHHHHHH-hcCCCCchhHHHH
Confidence 4689999999999999965543 45667788887654 67899999999999 9999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013398 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (444)
Q Consensus 324 g~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~ 384 (444)
|.++...+++++|+..+++.-++-|+. ..++..+|.++...|+.+.|+..|-=|.+++|+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQE-SSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 999999999999999999999999999 599999999999999999999999999999994
No 22
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.3e-22 Score=191.76 Aligned_cols=364 Identities=16% Similarity=0.085 Sum_probs=274.7
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHH---H---H------------HHHHHHHH
Q 013398 13 IFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNR---A---V------------ELLPELWK 74 (444)
Q Consensus 13 ~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~---a---~------------~~l~~~~~ 74 (444)
+|..|+.+.+.|....|+..+..++.. .|-+|++|..+...+.. + . ..++.+|.
T Consensus 167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~--------~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 167 LYLYGVVLKELGLLSLAIDSFVEVVNR--------YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhc--------CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 577899999999999999999998865 35555544444322100 0 0 01223455
Q ss_pred HhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHH
Q 013398 75 LADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVAL 154 (444)
Q Consensus 75 ~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l 154 (444)
...+.++++.-+.+.+....... ..+..+.|. +...+.++++|+..+ +.+.
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~----~~i~~~~A~--------------------~~y~~rDfD~a~s~F-----eei~ 289 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNS----MYIKTQIAA--------------------ASYNQRDFDQAESVF-----EEIR 289 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCcc----HHHHHHHHH--------------------HHhhhhhHHHHHHHH-----HHHH
Confidence 55577777777777666511111 112222222 223455789998875 5567
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013398 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (444)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~ 234 (444)
+.+|-..+-.....+++.-..+-.+-.-.-+.+..++.-.++...-.|.-|.-.++.++|+..|++|+ ++||+...+|
T Consensus 290 knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL--kLNp~~~~aW 367 (559)
T KOG1155|consen 290 KNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL--KLNPKYLSAW 367 (559)
T ss_pred hcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH--hcCcchhHHH
Confidence 78887777667777777766665555555566777887788888888999999999999999999999 8999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013398 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (444)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P 314 (444)
.++|--+.. .++...|+..|++|+++.|.+ -+||+-||.+|..+ +.+.=|+-.|++|+ +..|
T Consensus 368 TLmGHEyvE-mKNt~AAi~sYRrAvdi~p~D-----yRAWYGLGQaYeim-----------~Mh~YaLyYfqkA~-~~kP 429 (559)
T KOG1155|consen 368 TLMGHEYVE-MKNTHAAIESYRRAVDINPRD-----YRAWYGLGQAYEIM-----------KMHFYALYYFQKAL-ELKP 429 (559)
T ss_pred HHhhHHHHH-hcccHHHHHHHHHHHhcCchh-----HHHHhhhhHHHHHh-----------cchHHHHHHHHHHH-hcCC
Confidence 988776655 567789999999999966544 58999999999765 56778999999999 9999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh-------hcCCCCc
Q 013398 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD-------QTGKWEQ 387 (444)
Q Consensus 315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~-------~~P~~~~ 387 (444)
+|+..|..||.+|.+.++.++|+++|++|+...... ..++..||.++...+++.+|..+|++-++ ..| .-
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~--~t 506 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD--ET 506 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch--HH
Confidence 999999999999999999999999999999998887 49999999999999999999999999997 345 45
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCccchhhhcc
Q 013398 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVCL 436 (444)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~~~~ 436 (444)
..+...++.-+.+.+++++|..+..+++...+...++...---+.+++.
T Consensus 507 ~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 507 IKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 6777779999999999999999999988876655554443333344444
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.8e-21 Score=186.81 Aligned_cols=212 Identities=12% Similarity=0.050 Sum_probs=193.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013398 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (444)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~ 230 (444)
+.++..+|.++..|..++.+|....+.++-...|.+|..++|.++++|++.|.+++-++++++|+.-|++++ .++|++
T Consensus 350 ~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai--~L~pe~ 427 (606)
T KOG0547|consen 350 DAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI--SLDPEN 427 (606)
T ss_pred HHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh--hcChhh
Confidence 577888999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHH
Q 013398 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (444)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~ 310 (444)
+.++..++...|+ .+++++++..|+.++..+|.- +.++.+.+.++..+ +++++|++.|++++
T Consensus 428 ~~~~iQl~~a~Yr-~~k~~~~m~~Fee~kkkFP~~-----~Evy~~fAeiLtDq-----------qqFd~A~k~YD~ai- 489 (606)
T KOG0547|consen 428 AYAYIQLCCALYR-QHKIAESMKTFEEAKKKFPNC-----PEVYNLFAEILTDQ-----------QQFDKAVKQYDKAI- 489 (606)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCC-----chHHHHHHHHHhhH-----------HhHHHHHHHHHHHH-
Confidence 9999888777666 579999999999999998865 46788888888765 57999999999999
Q ss_pred hhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 311 STNMR------DLSILYRLSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 311 ~~~P~------~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
++.|. ++..+.+-|.+..+ .+++..|+..+++|+++||... .++..||.+...+|+.++|+..|++++.+.-
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce-~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE-QAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999 88877777766554 5899999999999999999994 9999999999999999999999999998875
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.91 E-value=8e-24 Score=202.37 Aligned_cols=263 Identities=20% Similarity=0.111 Sum_probs=118.1
Q ss_pred cCccccCCCcHHHHHHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 013398 128 MGSSFVPRNNIEEAILLLMILLRKVALKR-IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYY 206 (444)
Q Consensus 128 ~~~~~~~~~~~~eAi~~l~~~~~~~~l~~-~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 206 (444)
+..++...|++++|+..+. +.+... .|+++.+|..+|.+....|+++.|+..|++++..++.++..+..++.+ .
T Consensus 14 ~A~~~~~~~~~~~Al~~L~----~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLK----KAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3456777899999998762 223333 489999999999999999999999999999999999999999999998 7
Q ss_pred HCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhh
Q 013398 207 GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (444)
Q Consensus 207 ~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (444)
..+++++|+..++++. ...+ ++..+.....++ ...++++++...++++... ++.. .....|..+|.++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~--~~~~-~~~~l~~~l~~~-~~~~~~~~~~~~l~~~~~~-~~~~--~~~~~~~~~a~~~~~~-- 159 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAY--ERDG-DPRYLLSALQLY-YRLGDYDEAEELLEKLEEL-PAAP--DSARFWLALAEIYEQL-- 159 (280)
T ss_dssp --------------------------------H-H-HHTT-HHHHHHHHHHHHH--T-----T-HHHHHHHHHHHHHC--
T ss_pred cccccccccccccccc--cccc-ccchhhHHHHHH-HHHhHHHHHHHHHHHHHhc-cCCC--CCHHHHHHHHHHHHHc--
Confidence 9999999999999998 5444 344444344443 4568999999999998863 3211 1356788888888664
Q ss_pred hhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc
Q 013398 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (444)
Q Consensus 287 ~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g 366 (444)
|+.++|+..|++++ +++|+|+.++..+++++...|+.+++...++...+..|+++ ..|..+|.++..+|
T Consensus 160 ---------G~~~~A~~~~~~al-~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~-~~~~~la~~~~~lg 228 (280)
T PF13429_consen 160 ---------GDPDKALRDYRKAL-ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP-DLWDALAAAYLQLG 228 (280)
T ss_dssp ---------CHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC-CHCHHHHHHHHHHT
T ss_pred ---------CCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH-HHHHHHHHHhcccc
Confidence 67899999999999 99999999999999999999999999999999998889986 89999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013398 367 RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (444)
Q Consensus 367 ~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 417 (444)
++++|+.++++++..+| +|+..+.++|.++...|+.++|+..+++++..
T Consensus 229 ~~~~Al~~~~~~~~~~p--~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 229 RYEEALEYLEKALKLNP--DDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp -HHHHHHHHHHHHHHST--T-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 99999999999999999 99999999999999999999999999999764
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.1e-20 Score=194.11 Aligned_cols=350 Identities=16% Similarity=0.109 Sum_probs=261.6
Q ss_pred HHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 013398 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (444)
Q Consensus 11 ~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL 90 (444)
-+++-||...+..|+|-.|...|+.+|.+.+.. .|+. .+ ..|-++.+.|+.+.|+..|.++|
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~----~aD~-----rI---------gig~Cf~kl~~~~~a~~a~~ral 226 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPAC----KADV-----RI---------GIGHCFWKLGMSEKALLAFERAL 226 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCccc----CCCc-----cc---------hhhhHHHhccchhhHHHHHHHHH
Confidence 456677888888889999999999988774332 2221 11 22456778999999999999999
Q ss_pred CcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013398 91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (444)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (444)
++ ||.+..+ ...++.+.+. +.....+..++.++ ..+-..+|.+|.+..+|+.-
T Consensus 227 qL----dp~~v~a-lv~L~~~~l~-----------------~~d~~s~~~~~~ll-----~~ay~~n~~nP~~l~~LAn~ 279 (1018)
T KOG2002|consen 227 QL----DPTCVSA-LVALGEVDLN-----------------FNDSDSYKKGVQLL-----QRAYKENNENPVALNHLANH 279 (1018)
T ss_pred hc----ChhhHHH-HHHHHHHHHH-----------------ccchHHHHHHHHHH-----HHHHhhcCCCcHHHHHHHHH
Confidence 99 7765433 2334443222 11223466666665 33457789999999999999
Q ss_pred HHhcCCHHHHHHHHHhhcCCCC---CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC-hHHHHHHHHHHhcCCC
Q 013398 171 FSIAGDLSSLATQIEELLPGII---NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-LPALLIASKICGEYPD 246 (444)
Q Consensus 171 l~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~-~~a~~~~~~~~~~~~~ 246 (444)
+...|+|+.+....+.++...- --++.+|++|.+++.+|+|++|...|.+++ +.+|++ +-.++.+|.++.. .|
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~--k~~~d~~~l~~~GlgQm~i~-~~ 356 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL--KADNDNFVLPLVGLGQMYIK-RG 356 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--ccCCCCccccccchhHHHHH-hc
Confidence 9999999999999999988763 345669999999999999999999999999 889988 6667777777654 68
Q ss_pred CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013398 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE 326 (444)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~ 326 (444)
+.++|+.+|++++...|.+. .....||..|...+. .....++|..+..+++ +..|.|.++|..+|.+
T Consensus 357 dle~s~~~fEkv~k~~p~~~-----etm~iLG~Lya~~~~-------~~~~~d~a~~~l~K~~-~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQLPNNY-----ETMKILGCLYAHSAK-------KQEKRDKASNVLGKVL-EQTPVDSEAWLELAQL 423 (1018)
T ss_pred hHHHHHHHHHHHHHhCcchH-----HHHHHHHhHHHhhhh-------hhHHHHHHHHHHHHHH-hcccccHHHHHHHHHH
Confidence 99999999999999777654 445667777665431 1234688999999999 8999999999999988
Q ss_pred HHHcCCHHHHHHHHHHHHhh-----cCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh-cCCC--C-----cHHHHHH
Q 013398 327 YAEQRKLNAAHYYAKMLLKL-----EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ-TGKW--E-----QGELLRT 393 (444)
Q Consensus 327 ~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~-~P~~--~-----~~~~~~~ 393 (444)
+.. ++.-.++..|.+|+.+ .+ -|.+.++++|..++..|.+.+|...+.+|+.. .|.. + +....||
T Consensus 424 ~e~-~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 424 LEQ-TDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHh-cChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 765 4555558888888732 23 23478888999999999999999999988865 2110 2 1235788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
+|.++...++++.|.+.|+.++..+|..-+
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId 531 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPGYID 531 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCchhHH
Confidence 999999999999999999999888886544
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.2e-20 Score=180.05 Aligned_cols=295 Identities=17% Similarity=0.103 Sum_probs=221.0
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013398 65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL 144 (444)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~ 144 (444)
.+.+.|.++.+.|....|++.|..++.. -|-+...+ ..+..... ..+-+
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AW-leL~~lit-----------------------~~e~~--- 214 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAW-LELSELIT-----------------------DIEIL--- 214 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHH-HHHHHhhc-----------------------hHHHH---
Confidence 5567889999999999999999999987 44332222 11111100 00000
Q ss_pred HHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHCCCchHHHHHHHHh
Q 013398 145 LMILLRKVALKRIEW--DPSILDHLSFAFSIAGDLSSLATQIEELLPG-IINRKERYHILALCYYGAGEDLVALNLLRTL 221 (444)
Q Consensus 145 l~~~~~~~~l~~~p~--~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~l~~~g~~~~A~~~~~~a 221 (444)
.......|. ..-.-..++.++....+.++++.-+++.+.. -|.++-.-...|.+.+.+.++++|+..|++.
T Consensus 215 ------~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei 288 (559)
T KOG1155|consen 215 ------SILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEI 288 (559)
T ss_pred ------HHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 001111232 2222345666666667777777777777666 5666666666677777777777777777777
Q ss_pred hcCCCCCCC---hHHHHH-------------HH-----------------HHHhcCCCCHHHHHHHHHHHHHHcCCCcch
Q 013398 222 LSGSEDPKC---LPALLI-------------AS-----------------KICGEYPDLAEEGATFASRALECLGDGCDQ 268 (444)
Q Consensus 222 l~~~~~P~~---~~a~~~-------------~~-----------------~~~~~~~~~~~eA~~~~~~al~~~~~~~~~ 268 (444)
+ +-+|=. .+.+-+ ++ +-++...++.+.|+.+|++++++ +|.
T Consensus 289 ~--knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL-Np~--- 362 (559)
T KOG1155|consen 289 R--KNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL-NPK--- 362 (559)
T ss_pred H--hcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc-Ccc---
Confidence 7 556632 221110 00 11233456889999999999995 443
Q ss_pred hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013398 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (444)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 348 (444)
...+|..+|.-|..+ .+...|+++|++|+ +++|.|..+||.||++|..++...=|+-+|++|+++.|
T Consensus 363 -~~~aWTLmGHEyvEm-----------KNt~AAi~sYRrAv-di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP 429 (559)
T KOG1155|consen 363 -YLSAWTLMGHEYVEM-----------KNTHAAIESYRRAV-DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP 429 (559)
T ss_pred -hhHHHHHhhHHHHHh-----------cccHHHHHHHHHHH-hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC
Confidence 267999999988665 45689999999999 99999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013398 349 GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (444)
Q Consensus 349 ~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 418 (444)
+|+ ..|..||.+|.++++.+||+.+|.+|+.... .+..+++.+|+++.++++.++|...|++-++..
T Consensus 430 nDs-Rlw~aLG~CY~kl~~~~eAiKCykrai~~~d--te~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 430 NDS-RLWVALGECYEKLNRLEEAIKCYKRAILLGD--TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred Cch-HHHHHHHHHHHHhccHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 995 9999999999999999999999999999987 788999999999999999999999999999865
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=2.4e-21 Score=202.04 Aligned_cols=242 Identities=12% Similarity=-0.066 Sum_probs=205.7
Q ss_pred CCCCHHHH--HHHHHHHHhc---CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC---------CCchHHHHHHHHhh
Q 013398 157 IEWDPSIL--DHLSFAFSIA---GDLSSLATQIEELLPGIINRKERYHILALCYYGA---------GEDLVALNLLRTLL 222 (444)
Q Consensus 157 ~p~~~~~~--~~lg~~l~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~---------g~~~~A~~~~~~al 222 (444)
.|.+.++| +..|..+... +.+++|++.|+++++++|+++.+|..+|.++... +++++|+..+++++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 45566644 3445544332 4568999999999999999999999999987744 34799999999999
Q ss_pred cCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHH
Q 013398 223 SGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKAL 302 (444)
Q Consensus 223 ~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~ 302 (444)
.++|+++.++..+|.++. ..|++++|+..|+++++..|.+ ..+++.+|.++... |++++|+
T Consensus 332 --~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~l~~~-----------G~~~eAi 392 (553)
T PRK12370 332 --ELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPIS-----ADIKYYYGWNLFMA-----------GQLEEAL 392 (553)
T ss_pred --hcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHC-----------CCHHHHH
Confidence 999999999998887754 4689999999999999965543 56899999998765 6799999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013398 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (444)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~ 381 (444)
..|++++ +++|+++.+++.++.++...|++++|+..+++++..+ |+++ .++.++|.++..+|++++|+..+++++..
T Consensus 393 ~~~~~Al-~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~-~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 393 QTINECL-KLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNP-ILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHH-hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCH-HHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 9999999 9999999988888888888999999999999999886 7774 88999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 382 TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 382 ~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
.| ++..++..++.++...| ++|...++++++....+..
T Consensus 471 ~~--~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 471 EI--TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred cc--hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 99 88888999999988888 5888888888776554443
No 28
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.7e-21 Score=190.19 Aligned_cols=251 Identities=14% Similarity=0.083 Sum_probs=221.9
Q ss_pred HHHHHhhCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC
Q 013398 150 RKVALKRIEWDPSILD-HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (444)
Q Consensus 150 ~~~~l~~~p~~~~~~~-~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P 228 (444)
.+.++..+|-++..+. ++| .+.+.|+..+-...=.+.+...|+.+-.|+..|.-|+..|++.+|.+.|.++. .+||
T Consensus 267 t~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat--~lD~ 343 (611)
T KOG1173|consen 267 TEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKAT--TLDP 343 (611)
T ss_pred hHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHh--hcCc
Confidence 3567788888777665 455 88999999988888889999999999999999999999999999999999999 9999
Q ss_pred CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHH
Q 013398 229 KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (444)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a 308 (444)
....+|+..|-.+ .-.+..++|+.+|.+|-+..++.. ...+++|.-|.. .+.+.-|.+.|.+|
T Consensus 344 ~fgpaWl~fghsf-a~e~EhdQAmaaY~tAarl~~G~h-----lP~LYlgmey~~-----------t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 344 TFGPAWLAFGHSF-AGEGEHDQAMAAYFTAARLMPGCH-----LPSLYLGMEYMR-----------TNNLKLAEKFFKQA 406 (611)
T ss_pred cccHHHHHHhHHh-hhcchHHHHHHHHHHHHHhccCCc-----chHHHHHHHHHH-----------hccHHHHHHHHHHH
Confidence 9999999887764 456899999999999999887643 456788887754 46789999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC----CC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013398 309 ARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG----SN--LKGWLLMARILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 309 l~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~----~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~ 382 (444)
+ .+.|.||-++..+|.+.+..+.+.+|+.+|++++..-++ .. ...|.+||.++.++++|++|+..++++|...
T Consensus 407 ~-ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 407 L-AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred H-hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 9 999999999999999999999999999999999942222 10 2468999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 383 P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
| .++..+-..|-++..+|+++.|++.|.++|.+.|++.-
T Consensus 486 ~--k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 486 P--KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred C--CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 9 89999999999999999999999999999999998743
No 29
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=6.4e-22 Score=193.90 Aligned_cols=242 Identities=17% Similarity=0.123 Sum_probs=205.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcC
Q 013398 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY 244 (444)
Q Consensus 165 ~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~ 244 (444)
+..|..+.+.|+..+|+-+||.+++.+|.+.++|..||.+....++-..|+.++++|+ +++|+|..+++.++ |++..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl--~LdP~NleaLmaLA-VSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCL--ELDPTNLEALMALA-VSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHH--hcCCccHHHHHHHH-HHHhh
Confidence 4678899999999999999999999999999999999999999999999999999999 99999999998765 55667
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhh-chHHHHhhHHHHHHHHHHHHHhhCC--CCHHHHH
Q 013398 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI-TDFDRATRQAKALQALVSAARSTNM--RDLSILY 321 (444)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~-~~~~~~~~~~eA~~~~~~al~~~~P--~~~~a~~ 321 (444)
.|.-.+|..++++=|...|+. ..+...-.. +.... ........+..-.+.|-.+. ..+| .||+++.
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y---------~~l~~a~~~-~~~~~~~s~~~~~~l~~i~~~fLeaa-~~~~~~~DpdvQ~ 434 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKY---------VHLVSAGEN-EDFENTKSFLDSSHLAHIQELFLEAA-RQLPTKIDPDVQS 434 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccc---------hhccccCcc-ccccCCcCCCCHHHHHHHHHHHHHHH-HhCCCCCChhHHh
Confidence 788889999999888854331 111111000 00000 00001234566778999999 9999 8999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013398 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401 (444)
Q Consensus 322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~ 401 (444)
-||.+|...|++++|+++|+.||..+|++ ...|+.||..+..-.+..||+.+|++|+++.| ....+++++|...+.+
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd-~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP--~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQVKPND-YLLWNRLGATLANGNRSEEAISAYNRALQLQP--GYVRVRYNLGISCMNL 511 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhcCCch-HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC--Ceeeeehhhhhhhhhh
Confidence 99999999999999999999999999999 59999999999999999999999999999999 8999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh
Q 013398 402 GQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 402 g~~~~A~~~~~~al~l~~~~~~ 423 (444)
|-|++|+.+|-.||.+.++..+
T Consensus 512 G~ykEA~~hlL~AL~mq~ks~~ 533 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRKSRN 533 (579)
T ss_pred hhHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999998443
No 30
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.89 E-value=7e-21 Score=175.50 Aligned_cols=299 Identities=14% Similarity=0.100 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHH
Q 013398 60 ETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIE 139 (444)
Q Consensus 60 ~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (444)
+.|-.|....|.+++++|++++|+.-|+.+|.-+++... ....+.+++..-- ..+...++. .+...|+..
T Consensus 103 pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~--~~eaqskl~~~~e-------~~~l~~ql~-s~~~~GD~~ 172 (504)
T KOG0624|consen 103 PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGL--VLEAQSKLALIQE-------HWVLVQQLK-SASGSGDCQ 172 (504)
T ss_pred ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcch--hHHHHHHHHhHHH-------HHHHHHHHH-HHhcCCchh
Confidence 345667778888999999999999999999998322111 1112223221100 000001111 233457778
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHH
Q 013398 140 EAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR 219 (444)
Q Consensus 140 eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~ 219 (444)
.+|..+ ..++...|++...+...+.+|...|++..||.-++.+-++..++++.+|....+++..|+.+.++...+
T Consensus 173 ~ai~~i-----~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 173 NAIEMI-----THLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred hHHHHH-----HHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 888764 567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHH
Q 013398 220 TLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA 299 (444)
Q Consensus 220 ~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 299 (444)
+|| +++|++-..+-. |.+..+....+...+++++ .+++.
T Consensus 248 ECL--KldpdHK~Cf~~-----YKklkKv~K~les~e~~ie----------------------------------~~~~t 286 (504)
T KOG0624|consen 248 ECL--KLDPDHKLCFPF-----YKKLKKVVKSLESAEQAIE----------------------------------EKHWT 286 (504)
T ss_pred HHH--ccCcchhhHHHH-----HHHHHHHHHHHHHHHHHHh----------------------------------hhhHH
Confidence 999 899998754421 2222222233333333322 24677
Q ss_pred HHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013398 300 KALQALVSAARSTNMRDLSILY----RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 300 eA~~~~~~al~~~~P~~~~a~~----~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
++++..++++ +.+|..+.+.+ .+..++..-|++.+|+..+.++|.++|++ +.++...+..|..-..|++|+..|
T Consensus 287 ~cle~ge~vl-k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d-v~~l~dRAeA~l~dE~YD~AI~dy 364 (504)
T KOG0624|consen 287 ECLEAGEKVL-KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD-VQVLCDRAEAYLGDEMYDDAIHDY 364 (504)
T ss_pred HHHHHHHHHH-hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8888888888 88888666554 34667777788888888888888888888 588888888888888888888888
Q ss_pred HHHHhhcCCCCcHHHHHHHHHH--H-H--------------HhCCHHHHHHHHHHHHHHH
Q 013398 376 NAALDQTGKWEQGELLRTKAKV--Q-L--------------VQGQLKGAVETYTHLLAAL 418 (444)
Q Consensus 376 ~~al~~~P~~~~~~~~~~la~~--~-~--------------~~g~~~~A~~~~~~al~l~ 418 (444)
++|.+.+| +|-.+.-.+-.+ + . +.-...+-..+|+++-.-|
T Consensus 365 e~A~e~n~--sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkW 422 (504)
T KOG0624|consen 365 EKALELNE--SNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKW 422 (504)
T ss_pred HHHHhcCc--ccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhc
Confidence 88888888 554443222111 1 1 1223456778888875444
No 31
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.88 E-value=1.9e-20 Score=180.05 Aligned_cols=239 Identities=13% Similarity=0.011 Sum_probs=181.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Q 013398 134 PRNNIEEAILLLMILLRKVALKRIE----WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG 209 (444)
Q Consensus 134 ~~~~~~eAi~~l~~~~~~~~l~~~p----~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g 209 (444)
+.++.+.+|..+ ..++...| ..+..|+.+|.++...|++++|+..|+++++++|+++.+|+++|.++...|
T Consensus 38 ~~~~~e~~i~~~-----~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 38 PTLQQEVILARL-----NQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG 112 (296)
T ss_pred CchHHHHHHHHH-----HHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 345566777654 34554333 346789999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhh
Q 013398 210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI 289 (444)
Q Consensus 210 ~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~ 289 (444)
++++|+..|++++ +++|++..++..+|.+++ ..|++++|+..++++++..|.++ . ...|..++.
T Consensus 113 ~~~~A~~~~~~Al--~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~--~-~~~~~~l~~---------- 176 (296)
T PRK11189 113 NFDAAYEAFDSVL--ELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDP--Y-RALWLYLAE---------- 176 (296)
T ss_pred CHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCH--H-HHHHHHHHH----------
Confidence 9999999999999 999999999988877654 57999999999999999655442 1 112222221
Q ss_pred chHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH--HHH----HHHHHhhcCCCChHHHHHHHHHHH
Q 013398 290 TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAA--HYY----AKMLLKLEGGSNLKGWLLMARILS 363 (444)
Q Consensus 290 ~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A--~~~----~~~al~l~P~~~~~~~~~la~~l~ 363 (444)
..+++++|+..|++++ ...+.+ .|. .+.+....|++.++ +.. ++++++++|+. .++|+++|.++.
T Consensus 177 ----~~~~~~~A~~~l~~~~-~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~-~ea~~~Lg~~~~ 247 (296)
T PRK11189 177 ----SKLDPKQAKENLKQRY-EKLDKE--QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERL-CETYFYLAKYYL 247 (296)
T ss_pred ----ccCCHHHHHHHHHHHH-hhCCcc--ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHH-HHHHHHHHHHHH
Confidence 1356899999998877 554332 222 45666667776443 322 23334777887 599999999999
Q ss_pred HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCC
Q 013398 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ 403 (444)
Q Consensus 364 ~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~ 403 (444)
.+|++++|+.+|++|++.+|. ++.+..+.+..+....++
T Consensus 248 ~~g~~~~A~~~~~~Al~~~~~-~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 248 SLGDLDEAAALFKLALANNVY-NFVEHRYALLELALLGQD 286 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHhh
Confidence 999999999999999999963 567766666555544333
No 32
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.88 E-value=9.6e-21 Score=182.10 Aligned_cols=249 Identities=14% Similarity=0.011 Sum_probs=187.2
Q ss_pred HhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHH
Q 013398 75 LADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVAL 154 (444)
Q Consensus 75 ~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l 154 (444)
..++.+.++..+.++|...+ .+|..........+. ++...|++++|+..+ +.++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~-~~~~~~a~~~~~~g~--------------------~~~~~g~~~~A~~~~-----~~Al 91 (296)
T PRK11189 38 PTLQQEVILARLNQILASRD-LTDEERAQLHYERGV--------------------LYDSLGLRALARNDF-----SQAL 91 (296)
T ss_pred CchHHHHHHHHHHHHHcccc-CCcHhhHHHHHHHHH--------------------HHHHCCCHHHHHHHH-----HHHH
Confidence 45788999999999997522 244332222233332 345578899998875 5567
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013398 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (444)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~ 234 (444)
+.+|+++.+|+.+|.++...|++++|++.|+++++++|++..+|+++|.++...|++++|+..|++++ +.+|+++...
T Consensus 92 ~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al--~~~P~~~~~~ 169 (296)
T PRK11189 92 ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY--QDDPNDPYRA 169 (296)
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999 8999998422
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013398 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (444)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P 314 (444)
+.. . .....++.++|+..+.+++...+++. .....+.+.+|.... ...++.+.+.++..+ +++|
T Consensus 170 ~~~-~-l~~~~~~~~~A~~~l~~~~~~~~~~~-~~~~~~~~~lg~~~~------------~~~~~~~~~~~~~~~-~l~~ 233 (296)
T PRK11189 170 LWL-Y-LAESKLDPKQAKENLKQRYEKLDKEQ-WGWNIVEFYLGKISE------------ETLMERLKAGATDNT-ELAE 233 (296)
T ss_pred HHH-H-HHHccCCHHHHHHHHHHHHhhCCccc-cHHHHHHHHccCCCH------------HHHHHHHHhcCCCcH-HHHH
Confidence 211 1 23446789999999988876544331 111223333333211 123455666677788 8899
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC
Q 013398 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (444)
Q Consensus 315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~ 367 (444)
+.+++|+++|.++..+|++++|+.+|++|++++|.+.++..+.+..+....++
T Consensus 234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 234 RLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999974325666665555444333
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.88 E-value=1.3e-20 Score=196.53 Aligned_cols=247 Identities=12% Similarity=-0.039 Sum_probs=204.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 013398 137 NIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA---------GDLSSLATQIEELLPGIINRKERYHILALCYYG 207 (444)
Q Consensus 137 ~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 207 (444)
.+++|+..+ +.+++.+|+++.+|..+|.++... +++++|+..++++++++|+++++|..+|.++..
T Consensus 276 ~~~~A~~~~-----~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 276 SLQQALKLL-----TQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHH-----HHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 466777765 566789999999999999877633 458999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhh
Q 013398 208 AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV 287 (444)
Q Consensus 208 ~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~ 287 (444)
.|++++|+..|++++ +++|+++.+++.+|.++. ..|++++|+.+++++++..|.+. .+++.++.++..
T Consensus 351 ~g~~~~A~~~~~~Al--~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~-----~~~~~~~~~~~~---- 418 (553)
T PRK12370 351 HSEYIVGSLLFKQAN--LLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRA-----AAGITKLWITYY---- 418 (553)
T ss_pred ccCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCh-----hhHHHHHHHHHh----
Confidence 999999999999999 999999999998887765 57999999999999999655432 233344443433
Q ss_pred hhchHHHHhhHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc
Q 013398 288 AITDFDRATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (444)
Q Consensus 288 ~~~~~~~~~~~~eA~~~~~~al~~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g 366 (444)
.|++++|+..+++++ ..+ |+++.++.++|.++..+|++++|...+++.....|++ ..++..++.++...|
T Consensus 419 -------~g~~eeA~~~~~~~l-~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 489 (553)
T PRK12370 419 -------HTGIDDAIRLGDELR-SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG-LIAVNLLYAEYCQNS 489 (553)
T ss_pred -------ccCHHHHHHHHHHHH-HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh-HHHHHHHHHHHhccH
Confidence 357899999999999 775 8899999999999999999999999999999999998 599999999998888
Q ss_pred CHHHHHHHHHHHHhh---cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013398 367 RYEDAETILNAALDQ---TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (444)
Q Consensus 367 ~~~eA~~~~~~al~~---~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 417 (444)
+ +|...+++.++. .| .++. ....++.-.|+.+.+... +++.+-
T Consensus 490 ~--~a~~~l~~ll~~~~~~~--~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 490 E--RALPTIREFLESEQRID--NNPG---LLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred H--HHHHHHHHHHHHhhHhh--cCch---HHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 4 777777776654 34 3322 377778888888888777 666554
No 34
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.9e-19 Score=175.97 Aligned_cols=342 Identities=14% Similarity=0.023 Sum_probs=255.1
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHH-------HHHhhhcCC-------------CCCC-----------
Q 013398 3 IHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILD-------IVESSFAEG-------------FPEN----------- 51 (444)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~-------~~~~~~~~~-------------~~~~----------- 51 (444)
.+.|++-.-..+.+|+.|..+..+++|...|+.+|- .+++..+.+ .|..
T Consensus 134 ~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~ 213 (611)
T KOG1173|consen 134 DLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLE 213 (611)
T ss_pred cccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHH
Confidence 456777777888999999999999999988888751 111111100 0000
Q ss_pred ----------C----------CccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHH
Q 013398 52 ----------L----------GADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIF 111 (444)
Q Consensus 52 ----------~----------~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ 111 (444)
+ ..-+++++. .+.+.-.+..++..+++.+-...+...++. ||-+..-+-..+|.+
T Consensus 214 ~lyel~~~k~~n~~~~~r~~~~sl~~l~~~-~dll~~~ad~~y~~c~f~~c~kit~~lle~----dpfh~~~~~~~ia~l 288 (611)
T KOG1173|consen 214 ILYELKLCKNRNEESLTRNEDESLIGLAEN-LDLLAEKADRLYYGCRFKECLKITEELLEK----DPFHLPCLPLHIACL 288 (611)
T ss_pred HHHHhhhhhhccccccccCchhhhhhhhhc-HHHHHHHHHHHHHcChHHHHHHHhHHHHhh----CCCCcchHHHHHHHH
Confidence 0 000011111 122222335577888999999999999988 443332233334422
Q ss_pred HhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC
Q 013398 112 LLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI 191 (444)
Q Consensus 112 ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~ 191 (444)
.- .|+ .-.++.. ........|+.+-.|+-.|.-|...|++.+|..+|.++..++
T Consensus 289 ~e---------------------l~~---~n~Lf~l--sh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD 342 (611)
T KOG1173|consen 289 YE---------------------LGK---SNKLFLL--SHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD 342 (611)
T ss_pred HH---------------------hcc---cchHHHH--HHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 11 111 1112222 244568899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013398 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (444)
Q Consensus 192 p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (444)
|....+|..+|.++...|..++|+.+|..|- ++-|+.....+++|- -+...+..+-|..+|..|+.+.|.++
T Consensus 343 ~~fgpaWl~fghsfa~e~EhdQAmaaY~tAa--rl~~G~hlP~LYlgm-ey~~t~n~kLAe~Ff~~A~ai~P~Dp----- 414 (611)
T KOG1173|consen 343 PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAA--RLMPGCHLPSLYLGM-EYMRTNNLKLAEKFFKQALAIAPSDP----- 414 (611)
T ss_pred ccccHHHHHHhHHhhhcchHHHHHHHHHHHH--HhccCCcchHHHHHH-HHHHhccHHHHHHHHHHHHhcCCCcc-----
Confidence 9999999999999999999999999999999 899986555555554 45667899999999999999877653
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC----C---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013398 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR----D---LSILYRLSLEYAEQRKLNAAHYYAKMLL 344 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~----~---~~a~~~lg~~~~~~g~~~~A~~~~~~al 344 (444)
.....+|.+.... +.+.+|...|+.++ ..-+. . ...+.|||.++.+.+++++|+.+|+++|
T Consensus 415 lv~~Elgvvay~~-----------~~y~~A~~~f~~~l-~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 415 LVLHELGVVAYTY-----------EEYPEALKYFQKAL-EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred hhhhhhhheeehH-----------hhhHHHHHHHHHHH-HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 5677889887653 46899999999988 53322 2 2347999999999999999999999999
Q ss_pred hhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013398 345 KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 345 ~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~ 398 (444)
.+.|.+ +.++..+|.++..+|+++.|+++|.+||.+.| ++..+--.++.+.
T Consensus 483 ~l~~k~-~~~~asig~iy~llgnld~Aid~fhKaL~l~p--~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 483 LLSPKD-ASTHASIGYIYHLLGNLDKAIDHFHKALALKP--DNIFISELLKLAI 533 (611)
T ss_pred HcCCCc-hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC--ccHHHHHHHHHHH
Confidence 999999 59999999999999999999999999999999 7766555555443
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.87 E-value=8.9e-20 Score=167.50 Aligned_cols=203 Identities=18% Similarity=0.146 Sum_probs=138.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHH
Q 013398 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (444)
Q Consensus 159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~ 238 (444)
..+.++..+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+..|++++ ..+|++..++..++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRAL--TLNPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCHHHHHHHH
Confidence 3467888999999999999999999999999999999999999999999999999999999999 88888877766555
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH
Q 013398 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (444)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~ 318 (444)
.++. ..|++++|+..++++++. + ..|..+.
T Consensus 107 ~~~~-~~g~~~~A~~~~~~~~~~-~------------------------------------------------~~~~~~~ 136 (234)
T TIGR02521 107 TFLC-QQGKYEQAMQQFEQAIED-P------------------------------------------------LYPQPAR 136 (234)
T ss_pred HHHH-HcccHHHHHHHHHHHHhc-c------------------------------------------------ccccchH
Confidence 5432 345555555555555541 1 1133444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013398 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~ 398 (444)
.++++|.++...|++++|...+++++..+|+++ .++..+|.++...|++++|+.++++++...| ++...+..++.++
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~ 213 (234)
T TIGR02521 137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQRP-ESLLELAELYYLRGQYKDARAYLERYQQTYN--QTAESLWLGIRIA 213 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 555566666666666666666666666666653 5566666666666666666666666665555 4555555566666
Q ss_pred HHhCCHHHHHHHHHHHHH
Q 013398 399 LVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 399 ~~~g~~~~A~~~~~~al~ 416 (444)
...|+.++|....+.+..
T Consensus 214 ~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 214 RALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHhhHHHHHHHHHHHHh
Confidence 666666666555555443
No 36
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=1.4e-18 Score=185.55 Aligned_cols=174 Identities=14% Similarity=0.060 Sum_probs=131.8
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013398 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (444)
Q Consensus 10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (444)
.+..|..++...+.|++++|+..|+++++.. |.+. .++.-+..++...|+.++|+.+++++
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--------P~~~-----------~av~dll~l~~~~G~~~~A~~~~eka 94 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--------PLQS-----------GQVDDWLQIAGWAGRDQEVIDVYERY 94 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--------ccch-----------hhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence 4566899999999999999999999999873 3321 11223445667789999999999999
Q ss_pred hCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013398 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (444)
Q Consensus 90 L~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (444)
+.. +|..... ...+|. ++..+|++++|+.++ +.+++.+|++++++..++.
T Consensus 95 ~~p----~n~~~~~-llalA~--------------------ly~~~gdyd~Aiely-----~kaL~~dP~n~~~l~gLa~ 144 (822)
T PRK14574 95 QSS----MNISSRG-LASAAR--------------------AYRNEKRWDQALALW-----QSSLKKDPTNPDLISGMIM 144 (822)
T ss_pred ccC----CCCCHHH-HHHHHH--------------------HHHHcCCHHHHHHHH-----HHHHhhCCCCHHHHHHHHH
Confidence 943 2221111 111222 344567899999886 5678889999999998889
Q ss_pred HHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHH
Q 013398 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235 (444)
Q Consensus 170 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~ 235 (444)
++...|+.++|++.++++++.+|++... ..++.++...++..+|+..|++++ ..+|++..++.
T Consensus 145 ~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll--~~~P~n~e~~~ 207 (822)
T PRK14574 145 TQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAV--RLAPTSEEVLK 207 (822)
T ss_pred HHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHH--HhCCCCHHHHH
Confidence 9999999999999999999999986554 556666666788877999999999 89999887654
No 37
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.2e-19 Score=176.72 Aligned_cols=372 Identities=12% Similarity=0.014 Sum_probs=209.0
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCC-------------------ccccHHHHHHHHHHHHHHHH
Q 013398 13 IFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLG-------------------ADCKLQETLNRAVELLPELW 73 (444)
Q Consensus 13 ~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~-------------------~~~~l~~~~~~a~~~l~~~~ 73 (444)
.-.+|...+..|+|+.|+..|..+|.+.+. +..-++. ...++.|.+..++.+.|..+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~----nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPT----NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL 80 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCC----ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence 446899999999999999999999876322 1111110 13355666889999999999
Q ss_pred HHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhh---cCCCCCCccc-------------------------
Q 013398 74 KLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYC---GGETCPPNLR------------------------- 125 (444)
Q Consensus 74 ~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~---~~~~~~~~~~------------------------- 125 (444)
+-.|++++|+..|.+.|+. ||.|.. +...++...... +....-|...
T Consensus 81 ~~lg~~~eA~~ay~~GL~~----d~~n~~-L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEK----DPSNKQ-LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HhcccHHHHHHHHHHHhhc----CCchHH-HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 9999999999999999999 887643 223333322111 0000000000
Q ss_pred ----cccCccccCCCcHHHHHHHHHHH-----HHHHHH----hhCC---------------------CCHHHHHHHHHHH
Q 013398 126 ----SQMGSSFVPRNNIEEAILLLMIL-----LRKVAL----KRIE---------------------WDPSILDHLSFAF 171 (444)
Q Consensus 126 ----~~~~~~~~~~~~~~eAi~~l~~~-----~~~~~l----~~~p---------------------~~~~~~~~lg~~l 171 (444)
.++ ..+..-.+...+...++.. ...... ...| .-....-.+|.+.
T Consensus 156 ~~~p~~l-~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 156 QKNPTSL-KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hcCcHhh-hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 000 1111122223333222110 000000 0011 0122456899999
Q ss_pred HhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH------HHHHhcCC
Q 013398 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA------SKICGEYP 245 (444)
Q Consensus 172 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~------~~~~~~~~ 245 (444)
....+++.|++.|..++.++ .+...+.+.|.+|+..|.+.+.+.....++ ...-....-+.++ .+-.+...
T Consensus 235 ykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~--E~gre~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAV--EVGRELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHH--HHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 99999999999999999999 999999999999999999999998888888 3333221111111 12234456
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013398 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (444)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~ 325 (444)
++++.|+.+|.+++..... ++ +.. +....++++...+... -++|.-..-.-.-|.
T Consensus 312 ~~~~~ai~~~~kaLte~Rt-~~------------~ls-----------~lk~~Ek~~k~~e~~a-~~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT-PD------------LLS-----------KLKEAEKALKEAERKA-YINPEKAEEEREKGN 366 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC-HH------------HHH-----------HHHHHHHHHHHHHHHH-hhChhHHHHHHHHHH
Confidence 8899999999998874321 10 110 1122344444444444 444444444444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013398 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (444)
Q Consensus 326 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~ 405 (444)
.+...|+|.+|+..|.+|+..+|+++ ..|.+.|.+|.++|.+.+|+..++++++++| ++..+|+..|.++..+.+|+
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~Da-~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p--~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPEDA-RLYSNRAACYLKLGEYPEALKDAKKCIELDP--NFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444442 4444444444444444444444444444444 44444444444444444444
Q ss_pred HHHHHHHHHHHHHHhhhhhc
Q 013398 406 GAVETYTHLLAALQVQTKTF 425 (444)
Q Consensus 406 ~A~~~~~~al~l~~~~~~~~ 425 (444)
.|+++|.+++++.|++.+..
T Consensus 444 kAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 444 KALEAYQEALELDPSNAEAI 463 (539)
T ss_pred HHHHHHHHHHhcCchhHHHH
Confidence 44444444444444444433
No 38
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=2.7e-20 Score=182.56 Aligned_cols=257 Identities=16% Similarity=0.118 Sum_probs=202.9
Q ss_pred CccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC
Q 013398 129 GSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA 208 (444)
Q Consensus 129 ~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~ 208 (444)
+-.+++.|.+-+|+..+ +++++++|.+.++|..||.+....++-..|+..++++++++|+|.++...||..|...
T Consensus 292 G~~lm~nG~L~~A~Laf-----EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAF-----EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHhcCCchHHHHHH-----HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 34556677777887764 6778899999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhh
Q 013398 209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICG--------EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS 280 (444)
Q Consensus 209 g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~--------~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 280 (444)
|.-.+|..++++.| .-.|....... +..-- .....+..-...|-.+....+.. ..+..+.-||+.
T Consensus 367 g~q~~Al~~L~~Wi--~~~p~y~~l~~--a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~---~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 367 GLQNQALKMLDKWI--RNKPKYVHLVS--AGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTK---IDPDVQSGLGVL 439 (579)
T ss_pred hhHHHHHHHHHHHH--HhCccchhccc--cCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCC---CChhHHhhhHHH
Confidence 99999999999999 67776432111 00000 00011112223344444434421 125678889998
Q ss_pred hhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 013398 281 LSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360 (444)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~ 360 (444)
|... +.|++|+.+|+.|+ ..+|+|...|+.||.+++...+.++|+..|++|+.|.|.+ +.++++||.
T Consensus 440 y~ls-----------~efdraiDcf~~AL-~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgI 506 (579)
T KOG1125|consen 440 YNLS-----------GEFDRAVDCFEAAL-QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGI 506 (579)
T ss_pred Hhcc-----------hHHHHHHHHHHHHH-hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhh
Confidence 8754 67999999999999 9999999999999999999999999999999999999999 699999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhcCCC----C----cHHHHHHHHHHHHHhCCHHHHHHH
Q 013398 361 ILSAQKRYEDAETILNAALDQTGKW----E----QGELLRTKAKVQLVQGQLKGAVET 410 (444)
Q Consensus 361 ~l~~~g~~~eA~~~~~~al~~~P~~----~----~~~~~~~la~~~~~~g~~~~A~~~ 410 (444)
.++.+|-|+||+.+|-.||...++. + +..+|-.+-.++...++.|-+..+
T Consensus 507 S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 9999999999999999999887741 1 124666666666677776644443
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.84 E-value=4e-18 Score=171.54 Aligned_cols=302 Identities=11% Similarity=-0.020 Sum_probs=226.1
Q ss_pred HHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013398 69 LPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL 148 (444)
Q Consensus 69 l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~ 148 (444)
-|.+....|+++.|.....++.+.. ++|.... ...|+ +...+|++++|...+
T Consensus 90 ~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~---llaA~--------------------aa~~~g~~~~A~~~l--- 141 (409)
T TIGR00540 90 EALLKLAEGDYAKAEKLIAKNADHA--AEPVLNL---IKAAE--------------------AAQQRGDEARANQHL--- 141 (409)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHH---HHHHH--------------------HHHHCCCHHHHHHHH---
Confidence 4567788999999999999998872 1222110 11122 223467889998876
Q ss_pred HHHHHHhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCC
Q 013398 149 LRKVALKRIEWDP-SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSED 227 (444)
Q Consensus 149 ~~~~~l~~~p~~~-~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~ 227 (444)
..+.+..|++. .+....+.++...|+++.|.+.+++.++..|+++.++..++.++...|++++|+..+.+.+ +..
T Consensus 142 --~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~--k~~ 217 (409)
T TIGR00540 142 --EEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA--KAG 217 (409)
T ss_pred --HHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HcC
Confidence 33456668775 5666679999999999999999999999999999999999999999999999999999999 554
Q ss_pred CCChHHH---HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHH
Q 013398 228 PKCLPAL---LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (444)
Q Consensus 228 P~~~~a~---~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~ 304 (444)
+.++... ...+...+...+..+++...+.++.+..|.. .......+..++..+.. .|++++|++.
T Consensus 218 ~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~-~~~~~~l~~~~a~~l~~-----------~g~~~~A~~~ 285 (409)
T TIGR00540 218 LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH-RRHNIALKIALAEHLID-----------CDDHDSAQEI 285 (409)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH-HhCCHHHHHHHHHHHHH-----------CCChHHHHHH
Confidence 4333322 1111111111223344556777777755421 00124566777776654 4679999999
Q ss_pred HHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh--HHHHHHHHHHHHccCHHHHHHHHH--HH
Q 013398 305 LVSAARSTNMRDLSIL--YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARILSAQKRYEDAETILN--AA 378 (444)
Q Consensus 305 ~~~al~~~~P~~~~a~--~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--~~~~~la~~l~~~g~~~eA~~~~~--~a 378 (444)
+++++ +..|++.... ..........++.+++++.++++++.+|++ . ..+..+|+++...|++++|..+++ ++
T Consensus 286 l~~~l-~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~-~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 286 IFDGL-KKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK-PKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred HHHHH-hhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 99999 9999998642 333334444688999999999999999998 5 667799999999999999999999 68
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013398 379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 379 l~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
++..| ++.. +..+|.++.++|+.++|...|++++...-
T Consensus 364 ~~~~p--~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 364 CKEQL--DAND-LAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred hhcCC--CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 88889 5544 66999999999999999999999987654
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.84 E-value=6.7e-21 Score=182.15 Aligned_cols=241 Identities=15% Similarity=0.045 Sum_probs=109.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc-CC-CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013398 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELL-PG-IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (444)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al-~~-~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~ 234 (444)
.|. ... ..++.++...|++++|++++++.+ .. .|++++.|..+|.+....|++++|+..|++++ ..+|.++..+
T Consensus 6 ~~~-~~~-l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~--~~~~~~~~~~ 81 (280)
T PF13429_consen 6 GPS-EEA-LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL--ASDKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc-ccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence 455 333 367999999999999999997665 44 48999999999999999999999999999999 8899888877
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC-
Q 013398 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN- 313 (444)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~- 313 (444)
..++.+ ...+++++|+..+.++.+.. +++ ..+.....++. +.++++++...++++. ...
T Consensus 82 ~~l~~l--~~~~~~~~A~~~~~~~~~~~-~~~-----~~l~~~l~~~~-----------~~~~~~~~~~~l~~~~-~~~~ 141 (280)
T PF13429_consen 82 ERLIQL--LQDGDPEEALKLAEKAYERD-GDP-----RYLLSALQLYY-----------RLGDYDEAEELLEKLE-ELPA 141 (280)
T ss_dssp --------------------------------------------H-HH-----------HTT-HHHHHHHHHHHH-H-T-
T ss_pred cccccc--cccccccccccccccccccc-ccc-----chhhHHHHHHH-----------HHhHHHHHHHHHHHHH-hccC
Confidence 666655 35689999999999988753 322 22222333332 2467889999999977 666
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013398 314 -MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (444)
Q Consensus 314 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~ 392 (444)
|+++..|+.+|.++.+.|+.++|+..|+++++++|++ ..++..++.++...|+++++...+....+..| +++.+|.
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~-~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~--~~~~~~~ 218 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD-PDARNALAWLLIDMGDYDEAREALKRLLKAAP--DDPDLWD 218 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H--TSCCHCH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc--CHHHHHH
Confidence 7899999999999999999999999999999999999 49999999999999999999999999888888 7888899
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013398 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
.+|.++..+|++++|+..|++++...|++...
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHHHHhcccccccccccccccccccccccccc
Confidence 99999999999999999999999999977654
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.84 E-value=7.9e-18 Score=169.38 Aligned_cols=301 Identities=12% Similarity=0.014 Sum_probs=227.8
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCc
Q 013398 13 IFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (444)
Q Consensus 13 ~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~ 92 (444)
...+|+.-...|++++|.+...++.+. .|.. ...+...+.++.+.|++++|..+|+++.+.
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~-----------~~~~llaA~aa~~~g~~~~A~~~l~~a~~~ 147 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADH--------AAEP-----------VLNLIKAAEAAQQRGDEARANQHLEEAAEL 147 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 356788888889999999988776553 2221 124456678899999999999999999987
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013398 93 CWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFS 172 (444)
Q Consensus 93 ~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~ 172 (444)
.|.+...+....+.+ +..+|++++|...+ +..++..|+++.++..++.++.
T Consensus 148 ----~p~~~l~~~~~~a~l--------------------~l~~~~~~~Al~~l-----~~l~~~~P~~~~~l~ll~~~~~ 198 (409)
T TIGR00540 148 ----AGNDNILVEIARTRI--------------------LLAQNELHAARHGV-----DKLLEMAPRHKEVLKLAEEAYI 198 (409)
T ss_pred ----CCcCchHHHHHHHHH--------------------HHHCCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHHH
Confidence 333211112222333 33467899998875 5567888999999999999999
Q ss_pred hcCCHHHHHHHHHhhcCCCCCCHHHHH----HHHHHHHHCCCchHHHHHHHHhhcCCCCC----CChHHHHHHHHHHhcC
Q 013398 173 IAGDLSSLATQIEELLPGIINRKERYH----ILALCYYGAGEDLVALNLLRTLLSGSEDP----KCLPALLIASKICGEY 244 (444)
Q Consensus 173 ~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~l~~~g~~~~A~~~~~~al~~~~~P----~~~~a~~~~~~~~~~~ 244 (444)
..|++++|.+.+++.++....++.... ....-+...+..+++...+.++. ...| +++.++...+..+ ..
T Consensus 199 ~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~--~~~p~~~~~~~~l~~~~a~~l-~~ 275 (409)
T TIGR00540 199 RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW--KNQPRHRRHNIALKIALAEHL-ID 275 (409)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH--HHCCHHHhCCHHHHHHHHHHH-HH
Confidence 999999999999999987555444332 33333355566666777888888 6777 5888888777754 56
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH--HHHHH
Q 013398 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL--SILYR 322 (444)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~--~a~~~ 322 (444)
.|+.++|+..++++++..|++.... ........... .++.+++++.+++++ +.+|+|+ ..+..
T Consensus 276 ~g~~~~A~~~l~~~l~~~pd~~~~~---~~~l~~~~~l~-----------~~~~~~~~~~~e~~l-k~~p~~~~~~ll~s 340 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKKLGDDRAIS---LPLCLPIPRLK-----------PEDNEKLEKLIEKQA-KNVDDKPKCCINRA 340 (409)
T ss_pred CCChHHHHHHHHHHHhhCCCcccch---hHHHHHhhhcC-----------CCChHHHHHHHHHHH-HhCCCChhHHHHHH
Confidence 7999999999999999776553210 00111111111 245678999999999 9999999 89999
Q ss_pred HHHHHHHcCCHHHHHHHHH--HHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013398 323 LSLEYAEQRKLNAAHYYAK--MLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (444)
Q Consensus 323 lg~~~~~~g~~~~A~~~~~--~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~ 381 (444)
+|+++.++|++++|.++|+ ++++.+|++ ..+..+|.++..+|+.++|..+|++++..
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~--~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDA--NDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999 688899985 45668999999999999999999999764
No 42
>PLN02789 farnesyltranstransferase
Probab=99.84 E-value=7.6e-19 Score=169.12 Aligned_cols=221 Identities=9% Similarity=0.034 Sum_probs=190.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC-CchHHHHHHHHhhcCCCCCCChHHHHH
Q 013398 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDPKCLPALLI 236 (444)
Q Consensus 158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g-~~~~A~~~~~~al~~~~~P~~~~a~~~ 236 (444)
|+..+++..+-.++...+++++|+..+.++|+++|++..+|+.+|.++..+| ++++++..+.+++ ..+|++..++..
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i--~~npknyqaW~~ 111 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVA--EDNPKNYQIWHH 111 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHH--HHCCcchHHhHH
Confidence 4455566566666778899999999999999999999999999999999999 6799999999999 899999999988
Q ss_pred HHHHHhcCCCC--HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013398 237 ASKICGEYPDL--AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (444)
Q Consensus 237 ~~~~~~~~~~~--~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P 314 (444)
.+.+.. ..++ .++++.+++++++..|.+ ..+|.+.|.++... +++++|++.+.+++ ++||
T Consensus 112 R~~~l~-~l~~~~~~~el~~~~kal~~dpkN-----y~AW~~R~w~l~~l-----------~~~~eeL~~~~~~I-~~d~ 173 (320)
T PLN02789 112 RRWLAE-KLGPDAANKELEFTRKILSLDAKN-----YHAWSHRQWVLRTL-----------GGWEDELEYCHQLL-EEDV 173 (320)
T ss_pred HHHHHH-HcCchhhHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHh-----------hhHHHHHHHHHHHH-HHCC
Confidence 776653 3454 368899999999965543 57999999988764 56899999999999 9999
Q ss_pred CCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhcC
Q 013398 315 RDLSILYRLSLEYAEQ---RKL----NAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQTG 383 (444)
Q Consensus 315 ~~~~a~~~lg~~~~~~---g~~----~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA~~~~~~al~~~P 383 (444)
.|..+|++.|.++... |++ ++++.++.+++.++|++. .+|+.++.++.. ++++.+|+..+.+++...|
T Consensus 174 ~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~-SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 174 RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNE-SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCc-CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 9999999999998876 333 578999999999999995 999999999988 4677889999999999999
Q ss_pred CCCcHHHHHHHHHHHHHh
Q 013398 384 KWEQGELLRTKAKVQLVQ 401 (444)
Q Consensus 384 ~~~~~~~~~~la~~~~~~ 401 (444)
.+..++-.++.++...
T Consensus 253 --~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 253 --NHVFALSDLLDLLCEG 268 (320)
T ss_pred --CcHHHHHHHHHHHHhh
Confidence 8899999999999763
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=1.6e-17 Score=170.21 Aligned_cols=99 Identities=20% Similarity=0.195 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 013398 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK 394 (444)
Q Consensus 315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l 394 (444)
++++.++.++.+|...|++.+|+.++..++...+......|..+|.+|..+|.|++|+.+|++++.+.| ++..+...+
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p--~~~D~Ri~L 489 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP--DNLDARITL 489 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CchhhhhhH
Confidence 567899999999999999999999999999988887567999999999999999999999999999999 999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHH
Q 013398 395 AKVQLVQGQLKGAVETYTHLL 415 (444)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~al 415 (444)
+.++.++|+.++|++.+.+..
T Consensus 490 asl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 490 ASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999998876
No 44
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.83 E-value=1.8e-17 Score=167.20 Aligned_cols=264 Identities=19% Similarity=0.090 Sum_probs=210.4
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC
Q 013398 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG-IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (444)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~ 229 (444)
+.+++.+|+|+.+.+.++.-|..+++.+.|.+..++++++ ..+++.+|..|+.++-..+|+.+|+.+.+.++ ...|+
T Consensus 468 e~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al--~E~~~ 545 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL--EEFGD 545 (799)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HHhhh
Confidence 5567889999999999999999999999999999999999 55689999999999999999999999999999 88898
Q ss_pred ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcch-------------------------hhhHHHHHhhhhhhhh
Q 013398 230 CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQ-------------------------MESTANCLLGISLSAQ 284 (444)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~-------------------------~~~~a~~~lg~~~~~~ 284 (444)
|.........+-+ ..|+.++|+......+......... -........+.+- .+
T Consensus 546 N~~l~~~~~~i~~-~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~ 623 (799)
T KOG4162|consen 546 NHVLMDGKIHIEL-TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQ 623 (799)
T ss_pred hhhhchhhhhhhh-hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hh
Confidence 7654433333322 2567777777776666554311000 0000011111111 11
Q ss_pred hhhhh-----------------------------chHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 013398 285 SKVAI-----------------------------TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA 335 (444)
Q Consensus 285 ~~~~~-----------------------------~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~ 335 (444)
..... ..+.+.+..++|..++.++- .++|-.+..|+..|.++...|+.++
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~-~~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS-KIDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-hcchhhHHHHHHhhHHHHHHHhhHH
Confidence 10000 00123466789999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH--HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013398 336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET--ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (444)
Q Consensus 336 A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~--~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 413 (444)
|...|..|+.+||++ +.+...+|.++...|+..-|.. .+..|++++| .+.++|+.+|.++..+|+.++|.++|..
T Consensus 703 A~~af~~Al~ldP~h-v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp--~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 703 AKEAFLVALALDPDH-VPSMTALAELLLELGSPRLAEKRSLLSDALRLDP--LNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHhcCCCC-cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 999999999999999 4999999999999998888877 9999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhh
Q 013398 414 LLAALQVQT 422 (444)
Q Consensus 414 al~l~~~~~ 422 (444)
++.+.+..+
T Consensus 780 a~qLe~S~P 788 (799)
T KOG4162|consen 780 ALQLEESNP 788 (799)
T ss_pred HHhhccCCC
Confidence 998876443
No 45
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7e-18 Score=159.18 Aligned_cols=247 Identities=15% Similarity=0.058 Sum_probs=189.1
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013398 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (444)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~ 234 (444)
..+|.........|..+...|+++.-.....+.+..+.....-|+--|..++...++..|+..-+++| +.+|++.+++
T Consensus 260 ~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I--~~~~r~~~al 337 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCI--DSEPRNHEAL 337 (564)
T ss_pred hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHh--ccCcccchHH
Confidence 33444444444444444444444444444444444443344446666667777788889999999999 9999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013398 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (444)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P 314 (444)
.+.|..+ ...++.++|+-.|+.+..+-|.+ -..|--|-.+|... +++.||...-+.+. ..-|
T Consensus 338 ilKG~lL-~~~~R~~~A~IaFR~Aq~Lap~r-----L~~Y~GL~hsYLA~-----------~~~kEA~~~An~~~-~~~~ 399 (564)
T KOG1174|consen 338 ILKGRLL-IALERHTQAVIAFRTAQMLAPYR-----LEIYRGLFHSYLAQ-----------KRFKEANALANWTI-RLFQ 399 (564)
T ss_pred HhccHHH-HhccchHHHHHHHHHHHhcchhh-----HHHHHHHHHHHHhh-----------chHHHHHHHHHHHH-HHhh
Confidence 9888875 55789999999999999854433 23333333444433 56789999999999 9999
Q ss_pred CCHHHHHHHH-HHHHHc-CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013398 315 RDLSILYRLS-LEYAEQ-RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (444)
Q Consensus 315 ~~~~a~~~lg-~~~~~~-g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~ 392 (444)
.++.++-.+| .++... .--++|.+.++++++++|+. ..+-+.++.++..-|+++++++.+++++...| +..++.
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y-~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~---D~~LH~ 475 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY-TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP---DVNLHN 475 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc-HHHHHHHHHHHHhhCccchHHHHHHHHHhhcc---ccHHHH
Confidence 9999999997 555543 45578999999999999999 69999999999999999999999999999999 447799
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013398 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (444)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 425 (444)
.+|.++..++.+++|++.|..+|.+.|+...+.
T Consensus 476 ~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 476 HLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 999999999999999999999999999877643
No 46
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.82 E-value=6.6e-19 Score=162.57 Aligned_cols=265 Identities=13% Similarity=0.074 Sum_probs=215.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH
Q 013398 134 PRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (444)
Q Consensus 134 ~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~ 213 (444)
..+++..|+.-+ .+++..+|++..+++..|.+|..+|+...|+.-+.++|++.|+...+..+.|.+++.+|++++
T Consensus 50 a~~Q~sDALt~y-----HaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 50 ARGQLSDALTHY-----HAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HhhhHHHHHHHH-----HHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHH
Confidence 355676777653 677888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCChH---HHHH------------HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013398 214 ALNLLRTLLSGSEDPKCLP---ALLI------------ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (444)
Q Consensus 214 A~~~~~~al~~~~~P~~~~---a~~~------------~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg 278 (444)
|+.-|+.+| .-+|++-. +.-. .... ....|+...++.+....|++.|=+ +..+...+
T Consensus 125 A~~DF~~vl--~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s-~~~~GD~~~ai~~i~~llEi~~Wd-----a~l~~~Ra 196 (504)
T KOG0624|consen 125 AEADFDQVL--QHEPSNGLVLEAQSKLALIQEHWVLVQQLKS-ASGSGDCQNAIEMITHLLEIQPWD-----ASLRQARA 196 (504)
T ss_pred HHHHHHHHH--hcCCCcchhHHHHHHHHhHHHHHHHHHHHHH-HhcCCchhhHHHHHHHHHhcCcch-----hHHHHHHH
Confidence 999999999 78886422 2111 1111 234688899999999999964422 34455566
Q ss_pred hhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHH--
Q 013398 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL-- 356 (444)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~-- 356 (444)
.||... |....||..++.+. ++..+|.+.+|.++.+++..|+.+.++...+.+|++||++. .++-
T Consensus 197 kc~i~~-----------~e~k~AI~Dlk~as-kLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK-~Cf~~Y 263 (504)
T KOG0624|consen 197 KCYIAE-----------GEPKKAIHDLKQAS-KLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK-LCFPFY 263 (504)
T ss_pred HHHHhc-----------CcHHHHHHHHHHHH-hccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh-hHHHHH
Confidence 677554 45778888888888 88889999999999999999999999999999999999874 4432
Q ss_pred ------------------------------------------------HHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013398 357 ------------------------------------------------LMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (444)
Q Consensus 357 ------------------------------------------------~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~ 388 (444)
.+-.++..-|++.+|+..+.++|+.+| ++.
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~--~dv 341 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP--DDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc--hHH
Confidence 122345566788999999999999999 899
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhcc
Q 013398 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (444)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 426 (444)
.++.-++.++.....||.|+..|+++.+..++++....
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 99999999999999999999999999999998877443
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=9.5e-18 Score=159.76 Aligned_cols=257 Identities=15% Similarity=0.082 Sum_probs=139.0
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhc--CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 013398 130 SSFVPRNNIEEAILLLMILLRKVALKRIE-WDPSILDHLSFAFSIA--GDLSSLATQIEELLPGIINRKERYHILALCYY 206 (444)
Q Consensus 130 ~~~~~~~~~~eAi~~l~~~~~~~~l~~~p-~~~~~~~~lg~~l~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 206 (444)
.-+.++|.++.||+.+... -+++. ....+-.+|...+..+ .++..|..+-+.++.++.-++.+..+.|.+-+
T Consensus 427 ~~~lk~~d~~~aieilkv~-----~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVF-----EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred HHHHhccCHHHHHHHHHHH-----HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 4567888999999876321 11111 1122334444444442 25556666666666666666666666666666
Q ss_pred HCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhh
Q 013398 207 GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (444)
Q Consensus 207 ~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (444)
..|++++|...|+++| .-+....+++++.|-. +..+|+.++|+.+|-+.-.++-.+ +.+++.++.+|...
T Consensus 502 ~ngd~dka~~~ykeal--~ndasc~ealfniglt-~e~~~~ldeald~f~klh~il~nn-----~evl~qianiye~l-- 571 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEAL--NNDASCTEALFNIGLT-AEALGNLDEALDCFLKLHAILLNN-----AEVLVQIANIYELL-- 571 (840)
T ss_pred ecCcHHHHHHHHHHHH--cCchHHHHHHHHhccc-HHHhcCHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHh--
Confidence 6666666666666666 4555555555544333 344566666666666555543322 34555555555432
Q ss_pred hhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc
Q 013398 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (444)
Q Consensus 287 ~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g 366 (444)
.+..+|++.+-++. .+-|+||.++..||.+|-+.|+-..|..++-..-+-.|-+ .+...-||..|....
T Consensus 572 ---------ed~aqaie~~~q~~-slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n-ie~iewl~ayyidtq 640 (840)
T KOG2003|consen 572 ---------EDPAQAIELLMQAN-SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN-IETIEWLAAYYIDTQ 640 (840)
T ss_pred ---------hCHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc-hHHHHHHHHHHHhhH
Confidence 34556666666666 6666666666666666666555555555555555555554 344444455554444
Q ss_pred CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013398 367 RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (444)
Q Consensus 367 ~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 414 (444)
=.++|+.++++|--..| +........+.++.+.|+|+.|++.|+..
T Consensus 641 f~ekai~y~ekaaliqp--~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 641 FSEKAINYFEKAALIQP--NQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45555555555554555 33333334455555555555555555444
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=9.3e-17 Score=160.92 Aligned_cols=253 Identities=12% Similarity=0.038 Sum_probs=176.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH
Q 013398 135 RNNIEEAILLLMILLRKVALKRIEWDPSIL-DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (444)
Q Consensus 135 ~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~-~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~ 213 (444)
+|++++|...+ ..+.+.+|++..+. ...+.++...|++++|.+.++++++.+|+++.++..++.+|...|++++
T Consensus 131 ~g~~~~A~~~l-----~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 131 RGDEARANQHL-----ERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred CCCHHHHHHHH-----HHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 55677777665 22345556554332 3447788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhcCCCCCCChH--------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhh
Q 013398 214 ALNLLRTLLSGSEDPKCLP--------ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS 285 (444)
Q Consensus 214 A~~~~~~al~~~~~P~~~~--------a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~ 285 (444)
|+..+.+.. +..+.++. ++..+....... +....+.++.+..|... .....++..++..+..
T Consensus 206 a~~~l~~l~--k~~~~~~~~~~~l~~~a~~~l~~~~~~~-----~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~-- 275 (398)
T PRK10747 206 LLDILPSMA--KAHVGDEEHRAMLEQQAWIGLMDQAMAD-----QGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIE-- 275 (398)
T ss_pred HHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHH--
Confidence 887777777 44443322 221111111111 22333444444333211 0123456666666654
Q ss_pred hhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc
Q 013398 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ 365 (444)
Q Consensus 286 ~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~ 365 (444)
.|+.++|.+.+++++ + .|.|+......+.+ ..++.+++++.+++.++.+|+++ ..+..+|.++..+
T Consensus 276 ---------~g~~~~A~~~L~~~l-~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~-~l~l~lgrl~~~~ 341 (398)
T PRK10747 276 ---------CDDHDTAQQIILDGL-K-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTP-LLWSTLGQLLMKH 341 (398)
T ss_pred ---------CCCHHHHHHHHHHHH-h-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHC
Confidence 357888999999998 7 55566555555544 34888999999999999999985 8888999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013398 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 366 g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
|++++|..+|+++++..| ++ ..+..++.++.++|+.++|..+|++++.+..
T Consensus 342 ~~~~~A~~~le~al~~~P--~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 342 GEWQEASLAFRAALKQRP--DA-YDYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred CCHHHHHHHHHHHHhcCC--CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 999999999999999988 54 4466788999999999999999999988764
No 49
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.2e-16 Score=151.04 Aligned_cols=282 Identities=11% Similarity=0.012 Sum_probs=226.1
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHH
Q 013398 64 RAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAIL 143 (444)
Q Consensus 64 ~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~ 143 (444)
.-+.-+|.++...|+.++|+..|++++.+ ||.+... ....|-+|-+ .|+++.--.
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~----dpy~i~~-MD~Ya~LL~~--------------------eg~~e~~~~ 287 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCA----NPDNVEA-MDLYAVLLGQ--------------------EGGCEQDSA 287 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhC----Chhhhhh-HHHHHHHHHh--------------------ccCHhhHHH
Confidence 35556778999999999999999999999 7765332 1223332221 233333222
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhc
Q 013398 144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS 223 (444)
Q Consensus 144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~ 223 (444)
+ ....+........-|+--+..+...+++..|+..-+++|+.+|.+.+++...|.++..+||.++|+-+|+.|.
T Consensus 288 L-----~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq- 361 (564)
T KOG1174|consen 288 L-----MDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ- 361 (564)
T ss_pred H-----HHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH-
Confidence 2 1223344444555677778888899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh-hhhhhhhhhhhchHHHHhhHHHHH
Q 013398 224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG-ISLSAQSKVAITDFDRATRQAKAL 302 (444)
Q Consensus 224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg-~~~~~~~~~~~~~~~~~~~~~eA~ 302 (444)
.+.|-....|-.+--. |.-.|++.||....+.++..++.+ ++++-.+| .++...- ...++|.
T Consensus 362 -~Lap~rL~~Y~GL~hs-YLA~~~~kEA~~~An~~~~~~~~s-----A~~LtL~g~~V~~~dp----------~~rEKAK 424 (564)
T KOG1174|consen 362 -MLAPYRLEIYRGLFHS-YLAQKRFKEANALANWTIRLFQNS-----ARSLTLFGTLVLFPDP----------RMREKAK 424 (564)
T ss_pred -hcchhhHHHHHHHHHH-HHhhchHHHHHHHHHHHHHHhhcc-----hhhhhhhcceeeccCc----------hhHHHHH
Confidence 9999998887654443 445689999999999999987765 67778887 4444321 2358999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013398 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~ 382 (444)
+.+++++ +++|+...+...++-.+...|++++++..+++.+...||+ ..+..||.++..++.+++|+++|..|+.++
T Consensus 425 kf~ek~L-~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 425 KFAEKSL-KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--NLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHhhh-ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999999 9999999999999999999999999999999999999995 899999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHH
Q 013398 383 GKWEQGELLRTKAKVQ 398 (444)
Q Consensus 383 P~~~~~~~~~~la~~~ 398 (444)
| .+-.....+-.+.
T Consensus 502 P--~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 502 P--KSKRTLRGLRLLE 515 (564)
T ss_pred c--cchHHHHHHHHHH
Confidence 9 6655554444433
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.80 E-value=2.5e-16 Score=157.81 Aligned_cols=242 Identities=14% Similarity=0.035 Sum_probs=123.3
Q ss_pred HHHHHHH-HHHHHhcCCHHHHHHHHHhhcCCCCCCHHHH-HHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHH
Q 013398 161 PSILDHL-SFAFSIAGDLSSLATQIEELLPGIINRKERY-HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (444)
Q Consensus 161 ~~~~~~l-g~~l~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~ 238 (444)
+.+++.+ +.+....|+++.|...|+++.+.+|++..+. ...+.++...|++++|+..+++++ +.+|+++.++..++
T Consensus 117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~--~~~P~~~~al~ll~ 194 (398)
T PRK10747 117 PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLL--EVAPRHPEVLRLAE 194 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCHHHHHHHH
Confidence 4444444 3333556666666666666666666554322 233566666666666666666666 56666666655555
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC
Q 013398 239 KICGEYPDLAEEGATFASRALECLGDGCDQME---STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (444)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~ 315 (444)
.++. ..|++++|+..+.+..+...-+++... ..++..+..... .....+...+.++... +..|+
T Consensus 195 ~~~~-~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~-----------~~~~~~~l~~~w~~lp-~~~~~ 261 (398)
T PRK10747 195 QAYI-RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM-----------ADQGSEGLKRWWKNQS-RKTRH 261 (398)
T ss_pred HHHH-HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH-----------HhcCHHHHHHHHHhCC-HHHhC
Confidence 4443 345666666666555553222111110 012111111000 0011233333444443 34455
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013398 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (444)
Q Consensus 316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la 395 (444)
++.++..+|..+...|+.++|.+.++++++. |.++ ......+.+ ..+++++++..+++.++.+| +++..++.+|
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~-~l~~l~~~l--~~~~~~~al~~~e~~lk~~P--~~~~l~l~lg 335 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDE-RLVLLIPRL--KTNNPEQLEKVLRQQIKQHG--DTPLLWSTLG 335 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCH-HHHHHHhhc--cCCChHHHHHHHHHHHhhCC--CCHHHHHHHH
Confidence 6666666666666666666666666666663 3332 333333333 22566666666666666666 5666666666
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 396 KVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
.++...|++++|.+.|++++++.|+...
T Consensus 336 rl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 6666666666666666666666554443
No 51
>PLN02789 farnesyltranstransferase
Probab=99.80 E-value=1.3e-17 Score=160.67 Aligned_cols=235 Identities=12% Similarity=-0.011 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCc--hHH
Q 013398 138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG-DLSSLATQIEELLPGIINRKERYHILALCYYGAGED--LVA 214 (444)
Q Consensus 138 ~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~--~~A 214 (444)
.++|+.++ ..++..+|++..+|+..|.++...| ++++++..++++++.+|++..+|++.+.++...|+. +++
T Consensus 53 serAL~lt-----~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 53 SPRALDLT-----ADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CHHHHHHH-----HHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 44555543 4556777888888888888888887 568888888888888888888888888888888764 667
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHH
Q 013398 215 LNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDR 294 (444)
Q Consensus 215 ~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~ 294 (444)
+..+++++ ..+|+|..++...+.+. ...|++++++.++.++|+..+.+ ..+|+++|.++...+.... .
T Consensus 128 l~~~~kal--~~dpkNy~AW~~R~w~l-~~l~~~~eeL~~~~~~I~~d~~N-----~sAW~~R~~vl~~~~~l~~----~ 195 (320)
T PLN02789 128 LEFTRKIL--SLDAKNYHAWSHRQWVL-RTLGGWEDELEYCHQLLEEDVRN-----NSAWNQRYFVITRSPLLGG----L 195 (320)
T ss_pred HHHHHHHH--HhCcccHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHCCCc-----hhHHHHHHHHHHhcccccc----c
Confidence 88888888 78888888888777664 44677888888888888864443 4678888877654321000 0
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc----
Q 013398 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK---- 366 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g---- 366 (444)
....+++++...+++ .++|+|..+|++++.++.. .++..+|+..+.+++..+|++ ..++..|+.++....
T Consensus 196 ~~~~e~el~y~~~aI-~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s-~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 196 EAMRDSELKYTIDAI-LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH-VFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred cccHHHHHHHHHHHH-HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc-HHHHHHHHHHHHhhhccch
Confidence 012467888999999 9999999999999999988 456788999999999999998 499999999997632
Q ss_pred --------------CHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013398 367 --------------RYEDAETILNAALDQTGKWEQGELLRT 393 (444)
Q Consensus 367 --------------~~~eA~~~~~~al~~~P~~~~~~~~~~ 393 (444)
..++|..+|+..-+.+| --...|..
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~--ir~~yw~~ 312 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSELEVADP--MRRNYWAW 312 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHHHhhCc--HHHHHHHH
Confidence 23567777777655566 44444443
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=1.9e-16 Score=169.36 Aligned_cols=130 Identities=14% Similarity=-0.001 Sum_probs=118.2
Q ss_pred HHhhHHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013398 294 RATRQAKALQALVSAARSTNM---------------RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P---------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (444)
..+++++|...+++.. ...| +-.++...++.++.-.|++.+|++.+++.+...|.+ ...+..+
T Consensus 379 d~e~~~~A~~~l~~~~-~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n-~~l~~~~ 456 (822)
T PRK14574 379 ESEQLDKAYQFAVNYS-EQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN-QNLRIAL 456 (822)
T ss_pred hcccHHHHHHHHHHHH-hcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHH
Confidence 3578999999999999 7544 334567788999999999999999999999999999 4999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccC
Q 013398 359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS 427 (444)
Q Consensus 359 a~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 427 (444)
|.++..+|++.+|+..++.++.++| ++..+.+.+|.+.+.+|++++|....+.+++..|++..+...
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l~P--~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESLAP--RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQEL 523 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhCC--ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHH
Confidence 9999999999999999999999999 899999999999999999999999999999999998876653
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1.4e-18 Score=159.60 Aligned_cols=215 Identities=16% Similarity=0.096 Sum_probs=176.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 013398 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~ 239 (444)
.++.+..|+.+|.+..+++.|+..|...+..-|.+.......|.++..+++.++|.+.|+.++ +++|.|++++...+.
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl--k~~~~nvEaiAcia~ 332 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVL--KLHPINVEAIACIAV 332 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH--hcCCccceeeeeeee
Confidence 567778889999999999999999999999999999999999999999999999999999999 899999987643333
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC---CC
Q 013398 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM---RD 316 (444)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P---~~ 316 (444)
-+ ...|+++-|+.+|++.|+.-..+ ...+.++|.|...- +++|-++.+|++|+ .... .-
T Consensus 333 ~y-fY~~~PE~AlryYRRiLqmG~~s-----peLf~NigLCC~ya-----------qQ~D~~L~sf~RAl-stat~~~~a 394 (478)
T KOG1129|consen 333 GY-FYDNNPEMALRYYRRILQMGAQS-----PELFCNIGLCCLYA-----------QQIDLVLPSFQRAL-STATQPGQA 394 (478)
T ss_pred cc-ccCCChHHHHHHHHHHHHhcCCC-----hHHHhhHHHHHHhh-----------cchhhhHHHHHHHH-hhccCcchh
Confidence 22 33678888999999998843222 45678888876542 46788888888888 6543 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013398 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK 396 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~ 396 (444)
+++|||||.+....|++.-|..+|+-++.-||++ .+++++||.+-...|+.++|...+..|-...| +-.+..++++.
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~ealnNLavL~~r~G~i~~Arsll~~A~s~~P--~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-GEALNNLAVLAARSGDILGARSLLNAAKSVMP--DMAEVTTNLQF 471 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCcch-HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc--cccccccceeE
Confidence 5788999988888899999999999999888988 58999999888888999999999988888888 77777777665
Q ss_pred H
Q 013398 397 V 397 (444)
Q Consensus 397 ~ 397 (444)
+
T Consensus 472 ~ 472 (478)
T KOG1129|consen 472 M 472 (478)
T ss_pred E
Confidence 4
No 54
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.79 E-value=2.9e-17 Score=144.80 Aligned_cols=207 Identities=18% Similarity=0.053 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHH
Q 013398 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKIC 241 (444)
Q Consensus 162 ~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~ 241 (444)
.++..||.-|...|++..|...+++||+.+|++..+|..+|.+|...|+.+.|.+.|++|+ .++|++-.++++-|..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl--sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL--SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH--hcCCCccchhhhhhHHH
Confidence 3677899999999999999999999999999999999999999999999999999999999 99999999988777765
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHH
Q 013398 242 GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILY 321 (444)
Q Consensus 242 ~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~ 321 (444)
.. .|++++|..+|++++. .|.-.. .+..+-++|.|-.+. |+++.|.+.|++++ +++|+++.+..
T Consensus 114 C~-qg~~~eA~q~F~~Al~-~P~Y~~--~s~t~eN~G~Cal~~-----------gq~~~A~~~l~raL-~~dp~~~~~~l 177 (250)
T COG3063 114 CA-QGRPEEAMQQFERALA-DPAYGE--PSDTLENLGLCALKA-----------GQFDQAEEYLKRAL-ELDPQFPPALL 177 (250)
T ss_pred Hh-CCChHHHHHHHHHHHh-CCCCCC--cchhhhhhHHHHhhc-----------CCchhHHHHHHHHH-HhCcCCChHHH
Confidence 55 4689999999999988 443221 245667777776543 45677777777777 77777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013398 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (444)
Q Consensus 322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~ 389 (444)
.++..+++.|++..|..++++...--+-. ++.+.+...+-...|+-+.|-.+=.+.-..+| ...+
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~-A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP--~s~e 242 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERYQQRGGAQ-AESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP--YSEE 242 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhccccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CcHH
Confidence 77777777777777777777776555544 35555555666666777777666666667777 5444
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.79 E-value=2.3e-17 Score=151.35 Aligned_cols=195 Identities=15% Similarity=0.054 Sum_probs=166.3
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Q 013398 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (444)
Q Consensus 131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~ 210 (444)
.+...|++++|+..+ +.++...|++..++..+|.++...|++++|++.|++++..+|.++.+++++|.++...|+
T Consensus 40 ~~~~~~~~~~A~~~~-----~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 114 (234)
T TIGR02521 40 GYLEQGDLEVAKENL-----DKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114 (234)
T ss_pred HHHHCCCHHHHHHHH-----HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 455678999999876 445677899999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc
Q 013398 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT 290 (444)
Q Consensus 211 ~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~ 290 (444)
+++|+..|++++ ...+ .+. . ...+..+|.++..
T Consensus 115 ~~~A~~~~~~~~--~~~~-~~~--------------~-----------------------~~~~~~l~~~~~~------- 147 (234)
T TIGR02521 115 YEQAMQQFEQAI--EDPL-YPQ--------------P-----------------------ARSLENAGLCALK------- 147 (234)
T ss_pred HHHHHHHHHHHH--hccc-ccc--------------c-----------------------hHHHHHHHHHHHH-------
Confidence 999999999999 5322 110 0 1123445555543
Q ss_pred hHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH
Q 013398 291 DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (444)
Q Consensus 291 ~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e 370 (444)
.|++++|+..|++++ ..+|+++.++..+|.++...|++++|+..+++++.+.|+++ ..+..++.++...|+.++
T Consensus 148 ----~g~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 148 ----AGDFDKAEKYLTRAL-QIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA-ESLWLGIRIARALGDVAA 221 (234)
T ss_pred ----cCCHHHHHHHHHHHH-HhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhhHHH
Confidence 356899999999999 99999999999999999999999999999999999988874 888889999999999999
Q ss_pred HHHHHHHHHhhcC
Q 013398 371 AETILNAALDQTG 383 (444)
Q Consensus 371 A~~~~~~al~~~P 383 (444)
|..+.+.+....|
T Consensus 222 a~~~~~~~~~~~~ 234 (234)
T TIGR02521 222 AQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHhhCc
Confidence 9999888876654
No 56
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=9.6e-17 Score=164.52 Aligned_cols=307 Identities=15% Similarity=0.097 Sum_probs=224.9
Q ss_pred HHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013398 69 LPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL 148 (444)
Q Consensus 69 l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~ 148 (444)
.++..+..|++++|+..+..+++. +|.+.... ..+| .+|..+|+.+.+....+.
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkq----dp~~~~ay-~tL~--------------------~IyEqrGd~eK~l~~~ll- 198 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQ----DPRNPIAY-YTLG--------------------EIYEQRGDIEKALNFWLL- 198 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh----CccchhhH-HHHH--------------------HHHHHcccHHHHHHHHHH-
Confidence 346677789999999999999999 66554322 2233 456778888888765432
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC
Q 013398 149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (444)
Q Consensus 149 ~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P 228 (444)
+...+|.|.+.|..++.....+|.+.+|+-+|.+|++.+|.+.+..+..+.+|.++|+...|...|.+.+ .+.|
T Consensus 199 ----AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~--~~~p 272 (895)
T KOG2076|consen 199 ----AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLL--QLDP 272 (895)
T ss_pred ----HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH--hhCC
Confidence 3367899999999999999999999999999999999999999999999999999999999999999999 8998
Q ss_pred CC----hHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHH
Q 013398 229 KC----LPAL-LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ 303 (444)
Q Consensus 229 ~~----~~a~-~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~ 303 (444)
.. .... ...+...+. .+..+.|++.+..++...... ..... +..+...+.. ...++.|+.
T Consensus 273 ~~d~er~~d~i~~~~~~~~~-~~~~e~a~~~le~~~s~~~~~--~~~ed-~ni~ael~l~-----------~~q~d~~~~ 337 (895)
T KOG2076|consen 273 PVDIERIEDLIRRVAHYFIT-HNERERAAKALEGALSKEKDE--ASLED-LNILAELFLK-----------NKQSDKALM 337 (895)
T ss_pred chhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhcccc--ccccH-HHHHHHHHHH-----------hHHHHHhhH
Confidence 21 1111 112233333 344588888888888832221 11111 1122222211 123444444
Q ss_pred HHHHHHHh-----------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH
Q 013398 304 ALVSAARS-----------------------------TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (444)
Q Consensus 304 ~~~~al~~-----------------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 354 (444)
....-. . +.++=+-....+|.+..+.++..+++..+..--...|.+.+..
T Consensus 338 ~i~~~~-~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL 416 (895)
T KOG2076|consen 338 KIVDDR-NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDL 416 (895)
T ss_pred HHHHHh-ccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHH
Confidence 333322 2 1122222256667777777888888887766555557765688
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013398 355 WLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 355 ~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
+..++..|+..|+|.+|+.++..++...+. ++..+|+.+|.++..+|.+++|++.|++++.+.|++.++
T Consensus 417 ~~d~a~al~~~~~~~~Al~~l~~i~~~~~~-~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~ 485 (895)
T KOG2076|consen 417 YLDLADALTNIGKYKEALRLLSPITNREGY-QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDA 485 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcCccc-cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhh
Confidence 999999999999999999999999988773 568899999999999999999999999999999998875
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=2e-17 Score=152.03 Aligned_cols=242 Identities=14% Similarity=0.112 Sum_probs=213.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 013398 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~ 239 (444)
|.+--..+|.+|.+.|-+.+|...++.+++.. ..++.+..|+.+|.+..+.+.|+..|.+.+ ...|.++..+.-.++
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~-~~~dTfllLskvY~ridQP~~AL~~~~~gl--d~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF-PHPDTFLLLSKVYQRIDQPERALLVIGEGL--DSFPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhccHHHHHHHHhhhh--hcCCchhhhhhhhHH
Confidence 33344689999999999999999999999875 478999999999999999999999999999 899999988877888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHH
Q 013398 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI 319 (444)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a 319 (444)
+. +..++.++|+++|+.+++..+.+ ..+...+|..|+. .++.+-|+..|++++ +..-.+|+.
T Consensus 299 i~-eam~~~~~a~~lYk~vlk~~~~n-----vEaiAcia~~yfY-----------~~~PE~AlryYRRiL-qmG~~speL 360 (478)
T KOG1129|consen 299 IH-EAMEQQEDALQLYKLVLKLHPIN-----VEAIACIAVGYFY-----------DNNPEMALRYYRRIL-QMGAQSPEL 360 (478)
T ss_pred HH-HHHHhHHHHHHHHHHHHhcCCcc-----ceeeeeeeecccc-----------CCChHHHHHHHHHHH-HhcCCChHH
Confidence 85 45789999999999999965444 2333445555543 256899999999999 999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013398 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLE--GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (444)
Q Consensus 320 ~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~ 397 (444)
+.|+|.++.-.++++-++..|++|+..- |+..++.|+++|.+....|++.-|..+|+-++..+| ++.+++.++|.+
T Consensus 361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~--~h~ealnNLavL 438 (478)
T KOG1129|consen 361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA--QHGEALNNLAVL 438 (478)
T ss_pred HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc--chHHHHHhHHHH
Confidence 9999999999999999999999998754 565568999999999999999999999999999999 999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013398 398 QLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 398 ~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
..+.|++++|...|..+-+..|+-.++
T Consensus 439 ~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred HhhcCchHHHHHHHHHhhhhCcccccc
Confidence 999999999999999999999976653
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.75 E-value=2.4e-16 Score=158.48 Aligned_cols=263 Identities=20% Similarity=0.122 Sum_probs=203.3
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC--------CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcC--
Q 013398 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--------IINRKERYHILALCYYGAGEDLVALNLLRTLLSG-- 224 (444)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~-- 224 (444)
...|.-..+..+++.+|..+|++++|+..+++++.+ .|.-......+|.+|..++++.+|+..|++|++.
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 344666667778999999999999999999999998 6666666777999999999999999999999941
Q ss_pred -CCCCCCh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CcchhhhHHHHHhhhhhhhhhhhhhchHHHHhh
Q 013398 225 -SEDPKCL---PALLIASKICGEYPDLAEEGATFASRALECLGD---GCDQMESTANCLLGISLSAQSKVAITDFDRATR 297 (444)
Q Consensus 225 -~~~P~~~---~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 297 (444)
-.-++++ .++..++..+ ...|+++||..++++|+++... .........+.+++.++..+ ++
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly-~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~-----------~~ 340 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLY-YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM-----------NE 340 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh-----------cc
Confidence 1114444 3455555554 5679999999999999997532 11122344556666666543 56
Q ss_pred HHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--------CCChHHHHHHHHH
Q 013398 298 QAKALQALVSAARST--------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG--------GSNLKGWLLMARI 361 (444)
Q Consensus 298 ~~eA~~~~~~al~~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--------~~~~~~~~~la~~ 361 (444)
+++|+..+++++ ++ +|.-+....+||.+|..+|++++|.++|++|+.+.- .. ...+.++|..
T Consensus 341 ~Eea~~l~q~al-~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~-~~~l~~la~~ 418 (508)
T KOG1840|consen 341 YEEAKKLLQKAL-KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV-GKPLNQLAEA 418 (508)
T ss_pred hhHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh-hHHHHHHHHH
Confidence 788888888777 54 224467889999999999999999999999998762 22 2567789999
Q ss_pred HHHccCHHHHHHHHHHHHhhc----CC-CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCccch
Q 013398 362 LSAQKRYEDAETILNAALDQT----GK-WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF 431 (444)
Q Consensus 362 l~~~g~~~eA~~~~~~al~~~----P~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~ 431 (444)
+...+++.+|...|.+++.+. |+ ++-...+.++|.+|..+|+++.|++.-.+++..+..+.++..-+.-.
T Consensus 419 ~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~ 493 (508)
T KOG1840|consen 419 YEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVED 493 (508)
T ss_pred HHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhH
Confidence 999999999999999888653 31 04466788999999999999999999999999999887765554443
No 59
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.2e-16 Score=151.52 Aligned_cols=303 Identities=13% Similarity=0.007 Sum_probs=217.4
Q ss_pred HHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHH
Q 013398 70 PELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL 149 (444)
Q Consensus 70 ~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~ 149 (444)
|+..+..|+++.|+.+|..++.+ +|.|.- +..+ ....|...++|++|+.--
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l----~p~nhv-lySn--------------------rsaa~a~~~~~~~al~da---- 59 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIML----SPTNHV-LYSN--------------------RSAAYASLGSYEKALKDA---- 59 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHcc----CCCccc-hhcc--------------------hHHHHHHHhhHHHHHHHH----
Confidence 56778999999999999999999 665421 1011 112455577888887652
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC--------------------
Q 013398 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-------------------- 209 (444)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g-------------------- 209 (444)
......+|.=+.+|..+|.++.-.|+|++|+..|.+.|+.+|+|......|+.++...-
T Consensus 60 -~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~ 138 (539)
T KOG0548|consen 60 -TKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPL 138 (539)
T ss_pred -HHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChh
Confidence 34457889999999999999999999999999999999999999999999888772220
Q ss_pred ----CchHHHHHHHHhhcCCCCCCC-----------------------------------------------------hH
Q 013398 210 ----EDLVALNLLRTLLSGSEDPKC-----------------------------------------------------LP 232 (444)
Q Consensus 210 ----~~~~A~~~~~~al~~~~~P~~-----------------------------------------------------~~ 232 (444)
..+.+.....+.+ ..+|.+ .+
T Consensus 139 t~~~~~~~~~~~~l~~~--~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~e 216 (539)
T KOG0548|consen 139 TNYSLSDPAYVKILEII--QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTE 216 (539)
T ss_pred hhhhhccHHHHHHHHHh--hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHH
Confidence 0011111111111 111111 00
Q ss_pred ---------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc-------------
Q 013398 233 ---------ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT------------- 290 (444)
Q Consensus 233 ---------a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~------------- 290 (444)
..-.+|...+. ...++.|+.+|.+++++. .+. .-+.+.+.+|...+.....
T Consensus 217 e~~~k~~a~~ek~lgnaayk-kk~f~~a~q~y~~a~el~-~~i-----t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre 289 (539)
T KOG0548|consen 217 ERRVKEKAHKEKELGNAAYK-KKDFETAIQHYAKALELA-TDI-----TYLNNIAAVYLERGKYAECIELCEKAVEVGRE 289 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHH-hhhHHHHHHHHHHHHhHh-hhh-----HHHHHHHHHHHhccHHHHhhcchHHHHHHhHH
Confidence 11234555554 568899999999999965 332 2234444444443332210
Q ss_pred ---h--------------HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChH
Q 013398 291 ---D--------------FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (444)
Q Consensus 291 ---~--------------~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 353 (444)
+ ..+.++++.|+..|.+++ .-.-+ ..++-..+..++++........++|+- +.
T Consensus 290 ~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL-te~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~ 359 (539)
T KOG0548|consen 290 LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL-TEHRT--------PDLLSKLKEAEKALKEAERKAYINPEK-AE 359 (539)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh-hhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhH-HH
Confidence 0 123467788888888887 54433 455666677788888888888888886 46
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 354 ~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
--..-|.-++..|+|.+|+..|.+||..+| ++..+|.|+|.++.++|.+..|+..++.++++.|....
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~P--~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k 427 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRDP--EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK 427 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH
Confidence 666779999999999999999999999999 99999999999999999999999999999999776544
No 60
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4.2e-17 Score=154.20 Aligned_cols=267 Identities=14% Similarity=0.078 Sum_probs=222.0
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Q 013398 130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG 209 (444)
Q Consensus 130 ~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g 209 (444)
+.+..+..|.+|+..+ ..++...|++...|.+.+..+...|++++|....++.++++|+.+..+...+.++...+
T Consensus 57 n~~yk~k~Y~nal~~y-----t~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNY-----TFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred chHHHHhhHHHHHHHH-----HHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 4566677888888775 45678899999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHh--------hc--CCCCCCCh--HH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013398 210 EDLVALNLLRTL--------LS--GSEDPKCL--PA---LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (444)
Q Consensus 210 ~~~~A~~~~~~a--------l~--~~~~P~~~--~a---~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (444)
...+|...|+.. +. ..+-|.+. .+ +..+..-|+...++.++|....-.+++..+. +..+.
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-----n~~al 206 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-----NAEAL 206 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-----hhHHH
Confidence 888887555421 10 01222222 11 2234455778889999999999999985433 36788
Q ss_pred HHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHH
Q 013398 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------------ILYRLSLEYAEQRKLNAAHYYAKM 342 (444)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~------------a~~~lg~~~~~~g~~~~A~~~~~~ 342 (444)
+..|.|+... .+.+.|+..|++++ .++|++.+ .|-.-|.-.++.|++.+|.+.|..
T Consensus 207 ~vrg~~~yy~-----------~~~~ka~~hf~qal-~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 207 YVRGLCLYYN-----------DNADKAINHFQQAL-RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred Hhcccccccc-----------cchHHHHHHHhhhh-ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence 8999988764 46899999999999 99999865 345668888999999999999999
Q ss_pred HHhhcCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013398 343 LLKLEGGSN---LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 343 al~l~P~~~---~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
+|.++|++. +.+|.+++.+...+||..+|+..++.|+.++| ....++..+|.++..++++++|++.|++++....
T Consensus 275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~--syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS--SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999962 35788999999999999999999999999999 8999999999999999999999999999998766
Q ss_pred h
Q 013398 420 V 420 (444)
Q Consensus 420 ~ 420 (444)
+
T Consensus 353 s 353 (486)
T KOG0550|consen 353 D 353 (486)
T ss_pred c
Confidence 5
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.75 E-value=6.4e-16 Score=155.40 Aligned_cols=253 Identities=18% Similarity=0.135 Sum_probs=184.3
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhC
Q 013398 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~ 91 (444)
...+.|..|...|+|++|++.|+.++++..+...... +.+...+..+|.+|...+++++|+..|++||+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~h-----------l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKH-----------LVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccC-----------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445889999999999999999999998766432111 22556677799999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013398 92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF 171 (444)
Q Consensus 92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l 171 (444)
+. + .-++ ..+|.-..++.+|+.+|
T Consensus 270 i~-----e------~~~G---------------------------------------------~~h~~va~~l~nLa~ly 293 (508)
T KOG1840|consen 270 IR-----E------EVFG---------------------------------------------EDHPAVAATLNNLAVLY 293 (508)
T ss_pred HH-----H------HhcC---------------------------------------------CCCHHHHHHHHHHHHHH
Confidence 71 0 0000 12233345678899999
Q ss_pred HhcCCHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhc
Q 013398 172 SIAGDLSSLATQIEELLPGI--------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243 (444)
Q Consensus 172 ~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~ 243 (444)
...|++++|..++++|+.+- |.-...+.+++.++..++++++|+..|++++
T Consensus 294 ~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al--------------------- 352 (508)
T KOG1840|consen 294 YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL--------------------- 352 (508)
T ss_pred hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH---------------------
Confidence 99999999999888877552 1222334444555555555555555555544
Q ss_pred CCCCHHHHHHHHHHHHHHcC---CCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh--------
Q 013398 244 YPDLAEEGATFASRALECLG---DGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST-------- 312 (444)
Q Consensus 244 ~~~~~~eA~~~~~~al~~~~---~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~-------- 312 (444)
++.. +.+....+..+.+||.+|..+ |++.+|.+.|++|+ ++
T Consensus 353 ----------------~i~~~~~g~~~~~~a~~~~nl~~l~~~~-----------gk~~ea~~~~k~ai-~~~~~~~~~~ 404 (508)
T KOG1840|consen 353 ----------------KIYLDAPGEDNVNLAKIYANLAELYLKM-----------GKYKEAEELYKKAI-QILRELLGKK 404 (508)
T ss_pred ----------------HHHHhhccccchHHHHHHHHHHHHHHHh-----------cchhHHHHHHHHHH-HHHHhcccCc
Confidence 4322 111223456788899998775 57899999999999 65
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----CCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013398 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE----GGSN--LKGWLLMARILSAQKRYEDAETILNAALD 380 (444)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~ 380 (444)
++.....+.++|..+.+.+++.+|...|.++..+. |+++ ...+.+|+.+|..+|+|++|+++-++++.
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34556788999999999999999999999998764 4442 35788999999999999999999999984
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.73 E-value=6.8e-16 Score=136.19 Aligned_cols=195 Identities=15% Similarity=0.016 Sum_probs=164.0
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Q 013398 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (444)
Q Consensus 131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~ 210 (444)
-|..+|++..|...+ +.+++.+|++..+|..++.+|...|+.+.|.+.|++|++++|++.++++|.|..++.+|+
T Consensus 44 ~YL~~gd~~~A~~nl-----ekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 44 GYLQQGDYAQAKKNL-----EKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHCCCHHHHHHHH-----HHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 466788899998875 567899999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCCCCh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhh
Q 013398 211 DLVALNLLRTLLSGSEDPKCL---PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV 287 (444)
Q Consensus 211 ~~~A~~~~~~al~~~~~P~~~---~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~ 287 (444)
+++|...|++|+ .+|... ..+. +.++|..+.|+++.|..+|+++|+..|..+.... .+.....
T Consensus 119 ~~eA~q~F~~Al---~~P~Y~~~s~t~e-N~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l-----~~a~~~~----- 184 (250)
T COG3063 119 PEEAMQQFERAL---ADPAYGEPSDTLE-NLGLCALKAGQFDQAEEYLKRALELDPQFPPALL-----ELARLHY----- 184 (250)
T ss_pred hHHHHHHHHHHH---hCCCCCCcchhhh-hhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH-----HHHHHHH-----
Confidence 999999999999 678743 3444 4556777789999999999999997766543322 2222222
Q ss_pred hhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013398 288 AITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (444)
Q Consensus 288 ~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 351 (444)
..|++..|...+++.. ..-+-+++.+.....+-.+.|+-+.|-++=.+..++.|...
T Consensus 185 ------~~~~y~~Ar~~~~~~~-~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 185 ------KAGDYAPARLYLERYQ-QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred ------hcccchHHHHHHHHHH-hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 2467899999999999 88888888887777778889999999999999999999863
No 63
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.72 E-value=6.6e-16 Score=143.67 Aligned_cols=196 Identities=15% Similarity=0.021 Sum_probs=137.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH-
Q 013398 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP- 232 (444)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~- 232 (444)
.+..++.++.+|..+...|++++|+..|++++..+|+++ .+|+.+|.++...|++++|+..|++++ +.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~ 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI--RLHPNHPDA 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHCcCCCch
Confidence 356778899999999999999999999999999999876 688999999999999999999999999 89998876
Q ss_pred --HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHH
Q 013398 233 --ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (444)
Q Consensus 233 --a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~ 310 (444)
+++..|.+++... +.++. ..+++++|++.|++++
T Consensus 107 ~~a~~~~g~~~~~~~--------------------------------~~~~~-----------~~~~~~~A~~~~~~~~- 142 (235)
T TIGR03302 107 DYAYYLRGLSNYNQI--------------------------------DRVDR-----------DQTAAREAFEAFQELI- 142 (235)
T ss_pred HHHHHHHHHHHHHhc--------------------------------ccccC-----------CHHHHHHHHHHHHHHH-
Confidence 3444444332210 00110 1245778888888888
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC-CCcHH
Q 013398 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK-WEQGE 389 (444)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~-~~~~~ 389 (444)
..+|++..++..+..+... .. .. ......+|.++..+|++++|+..++++++..|+ +....
T Consensus 143 ~~~p~~~~~~~a~~~~~~~----~~-------------~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 204 (235)
T TIGR03302 143 RRYPNSEYAPDAKKRMDYL----RN-------------RL-AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEE 204 (235)
T ss_pred HHCCCChhHHHHHHHHHHH----HH-------------HH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHH
Confidence 8888887655332221110 00 01 133345677777777777777777777777662 02356
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013398 390 LLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 390 ~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
+++.+|.++..+|++++|...++.+..
T Consensus 205 a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 205 ALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777777777777777777666544
No 64
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.72 E-value=3.3e-14 Score=140.49 Aligned_cols=324 Identities=13% Similarity=0.015 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHhCc-CCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHH
Q 013398 62 LNRAVELLPELWKLADAPRETIMSYRRALLP-CWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEE 140 (444)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~-~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~e 140 (444)
+.-++..++.++...|++++|...|.++.+. +.+.++... ....+. .+...|++++
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~~a~--------------------~~~~~g~~~~ 61 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERER---AHVEAL--------------------SAWIAGDLPK 61 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHH---HHHHHH--------------------HHHHcCCHHH
Confidence 3457777888899999999999999999987 223332111 111111 2234678899
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHH
Q 013398 141 AILLLMILLRKVALKRIEWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALN 216 (444)
Q Consensus 141 Ai~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~ 216 (444)
|+..+ +.++..+|++..++.. +..+.. .|....+...++.....+|....++..+|.++..+|++++|+.
T Consensus 62 A~~~~-----~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 135 (355)
T cd05804 62 ALALL-----EQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEE 135 (355)
T ss_pred HHHHH-----HHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 98875 5567888999988775 555544 4555666666666667888888899999999999999999999
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHh
Q 013398 217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296 (444)
Q Consensus 217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 296 (444)
.+++++ .++|+++.++..++.+++. .|++++|+.++++++...+.+ .......+..++.++... |
T Consensus 136 ~~~~al--~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~-~~~~~~~~~~la~~~~~~-----------G 200 (355)
T cd05804 136 AARRAL--ELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCS-SMLRGHNWWHLALFYLER-----------G 200 (355)
T ss_pred HHHHHH--hhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCC-cchhHHHHHHHHHHHHHC-----------C
Confidence 999999 8999999998888888765 799999999999999965532 222334567788887664 6
Q ss_pred hHHHHHHHHHHHHHhhCCC--CHHHHHHH---HHHHHHcCCHHHHHHH---HHHHHhhcCCCC-hHHHHHHHHHHHHccC
Q 013398 297 RQAKALQALVSAARSTNMR--DLSILYRL---SLEYAEQRKLNAAHYY---AKMLLKLEGGSN-LKGWLLMARILSAQKR 367 (444)
Q Consensus 297 ~~~eA~~~~~~al~~~~P~--~~~a~~~l---g~~~~~~g~~~~A~~~---~~~al~l~P~~~-~~~~~~la~~l~~~g~ 367 (444)
++++|+..|++++ ...|. .....+.. -..+...|....+... ........|... .......+.++...|+
T Consensus 201 ~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 201 DYEAALAIYDTHI-APSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CHHHHHHHHHHHh-ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 7999999999999 88873 22222122 2222334433333222 111111112210 1333467888889999
Q ss_pred HHHHHHHHHHHHhhcC-------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCccch
Q 013398 368 YEDAETILNAALDQTG-------KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF 431 (444)
Q Consensus 368 ~~eA~~~~~~al~~~P-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~ 431 (444)
.++|...++......- .+....+....|.++..+|++++|+..+..++.+.. ..++|..+.++
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~-~~ggs~aq~~~ 349 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLA-RIGGSHAQRDV 349 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCCcHHHHHH
Confidence 9999999988765332 002356678889999999999999999999999984 55565555444
No 65
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=4.2e-15 Score=141.87 Aligned_cols=300 Identities=14% Similarity=0.066 Sum_probs=235.1
Q ss_pred HHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHH-HHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHH
Q 013398 72 LWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFA-IFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLR 150 (444)
Q Consensus 72 ~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a-~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~ 150 (444)
.+++.|+++.|++.++-.=+. |.........++. ..++.++. ++..|... .
T Consensus 428 ~~lk~~d~~~aieilkv~~~k----dnk~~saaa~nl~~l~flqggk-------------------~~~~aqqy-----a 479 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKK----DNKTASAAANNLCALRFLQGGK-------------------DFADAQQY-----A 479 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhc----cchhhHHHhhhhHHHHHHhccc-------------------chhHHHHH-----H
Confidence 478899999999988765554 3332222223332 22222221 34444433 3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013398 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (444)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~ 230 (444)
+.++..+-.++.+..+.|++-...|++++|.+.|+.+|.-+..-.++.|++|..+..+|+.++|+.+|-+.- .+--++
T Consensus 480 d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh--~il~nn 557 (840)
T KOG2003|consen 480 DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLH--AILLNN 557 (840)
T ss_pred HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH--HHHHhh
Confidence 555667777889999999999999999999999999999999999999999999999999999999999877 666788
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHH
Q 013398 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (444)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~ 310 (444)
.++++..+.++ ..+.+..+|++++-++....|.++ ..+.-||..|.+. |+..+|.+++-..-
T Consensus 558 ~evl~qianiy-e~led~aqaie~~~q~~slip~dp-----~ilskl~dlydqe-----------gdksqafq~~ydsy- 619 (840)
T KOG2003|consen 558 AEVLVQIANIY-ELLEDPAQAIELLMQANSLIPNDP-----AILSKLADLYDQE-----------GDKSQAFQCHYDSY- 619 (840)
T ss_pred HHHHHHHHHHH-HHhhCHHHHHHHHHHhcccCCCCH-----HHHHHHHHHhhcc-----------cchhhhhhhhhhcc-
Confidence 88888888885 557788999999999999776653 4567788888665 55678999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013398 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (444)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~ 390 (444)
+.-|-|.+..-.||.-|....=.++|+.+|++|--+.|+. ..-.+..+.++.+.|+|+.|...|+..-..+| .+.+.
T Consensus 620 ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~-~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp--edldc 696 (840)
T KOG2003|consen 620 RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ-SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP--EDLDC 696 (840)
T ss_pred cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc--cchHH
Confidence 9999999999999999999999999999999999999996 35556779999999999999999999999999 88888
Q ss_pred HHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHhhh
Q 013398 391 LRTKAKVQLVQGQL-----KGAVETYTHLLAALQVQT 422 (444)
Q Consensus 391 ~~~la~~~~~~g~~-----~~A~~~~~~al~l~~~~~ 422 (444)
+..+-.+.-.+|-. ..-++-.++.-+|...+.
T Consensus 697 lkflvri~~dlgl~d~key~~klek~eki~eir~qre 733 (840)
T KOG2003|consen 697 LKFLVRIAGDLGLKDAKEYADKLEKAEKIKEIREQRE 733 (840)
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777776555532 233344444555555443
No 66
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.71 E-value=5.6e-13 Score=146.53 Aligned_cols=257 Identities=11% Similarity=-0.016 Sum_probs=191.0
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcC----CCCCCHHHHHHHHHHH
Q 013398 130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLP----GIINRKERYHILALCY 205 (444)
Q Consensus 130 ~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~l 205 (444)
..|...|++++|+.++..- .-....-|...|..+-.++.+.|++++|.+.|+++.. +.|+ ...|..+...|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M----~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay 589 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIM----RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKAC 589 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHH
Confidence 4566778888998876321 1111223567888889999999999999999988864 3443 56788888889
Q ss_pred HHCCCchHHHHHHHHhhcCCCC-CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCCcchhhhHHHHHhhhhhhh
Q 013398 206 YGAGEDLVALNLLRTLLSGSED-PKCLPALLIASKICGEYPDLAEEGATFASRALECL-GDGCDQMESTANCLLGISLSA 283 (444)
Q Consensus 206 ~~~g~~~~A~~~~~~al~~~~~-P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~ 283 (444)
.+.|++++|+..|++.. +.+ +.++..+..+...+ .+.|++++|+..|++..+.- .|+ ...|..+..++..
T Consensus 590 ~k~G~ldeA~elf~~M~--e~gi~p~~~tynsLI~ay-~k~G~~deAl~lf~eM~~~Gv~PD-----~~TynsLI~a~~k 661 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIH--EYNIKGTPEVYTIAVNSC-SQKGDWDFALSIYDDMKKKGVKPD-----EVFFSALVDVAGH 661 (1060)
T ss_pred HHCCCHHHHHHHHHHHH--HcCCCCChHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHh
Confidence 99999999999999988 443 23444555444443 45788999999999888741 222 2345555555543
Q ss_pred hhhhhhchHHHHhhHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCCChHHHHHHHH
Q 013398 284 QSKVAITDFDRATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK--LEGGSNLKGWLLMAR 360 (444)
Q Consensus 284 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~~la~ 360 (444)
.|+.++|.+.+++.. +.. +.|..++..+...|.+.|++++|++.|++..+ +.|+ ...|..+..
T Consensus 662 -----------~G~~eeA~~l~~eM~-k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--vvtyN~LI~ 727 (1060)
T PLN03218 662 -----------AGDLDKAFEILQDAR-KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT--VSTMNALIT 727 (1060)
T ss_pred -----------CCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Confidence 367889999999988 654 56778889999999999999999999998765 4565 478999999
Q ss_pred HHHHccCHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013398 361 ILSAQKRYEDAETILNAALDQ--TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 361 ~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
.+.+.|++++|+..+++.... .| +...|..+-..+.+.|++++|...++++++
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~P---d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCP---NTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999987653 46 556677777888899999999988888765
No 67
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.70 E-value=5.2e-14 Score=151.37 Aligned_cols=340 Identities=10% Similarity=-0.028 Sum_probs=244.5
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCC-----------ccccHHHHH------------HHHHHH
Q 013398 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLG-----------ADCKLQETL------------NRAVEL 68 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~l~~~~------------~~a~~~ 68 (444)
.|.....+|.+.|++++|.+.|++.++... .|+... .....+..+ ..++..
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~------~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGS------DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCC------CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 355666677788888888888887764311 111100 000000000 012233
Q ss_pred HHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013398 69 LPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL 148 (444)
Q Consensus 69 l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~ 148 (444)
+...|.+.|++++|...|++.... +... + +. +...|...|++++|+.++..-
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~~----~~vt---~-n~--------------------li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEK----TTVA---W-NS--------------------MLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCC----ChhH---H-HH--------------------HHHHHHhCCCHHHHHHHHHHH
Confidence 446778888888888888876443 2211 1 11 113456678999999886321
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCC
Q 013398 149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI-INRKERYHILALCYYGAGEDLVALNLLRTLLSGSED 227 (444)
Q Consensus 149 ~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~ 227 (444)
.-....-|...|..+..++.+.|++++|.+.++.+++.. +.+..++..|...|.+.|++++|...|++.. .
T Consensus 317 ----~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~-- 388 (697)
T PLN03081 317 ----RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--R-- 388 (697)
T ss_pred ----HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--C--
Confidence 111123366688999999999999999999999998876 5677889999999999999999999999877 4
Q ss_pred CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHH
Q 013398 228 PKCLPALLIASKICGEYPDLAEEGATFASRALECL-GDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (444)
Q Consensus 228 P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~ 306 (444)
| +...|..+... +.+.|+.++|+..|++..+.- .|+ ...+..+-.++.. .|..++|.+.|+
T Consensus 389 ~-d~~t~n~lI~~-y~~~G~~~~A~~lf~~M~~~g~~Pd-----~~T~~~ll~a~~~-----------~g~~~~a~~~f~ 450 (697)
T PLN03081 389 K-NLISWNALIAG-YGNHGRGTKAVEMFERMIAEGVAPN-----HVTFLAVLSACRY-----------SGLSEQGWEIFQ 450 (697)
T ss_pred C-CeeeHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHhc-----------CCcHHHHHHHHH
Confidence 4 34455555444 345789999999999988742 222 2334444444433 367899999999
Q ss_pred HHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013398 307 SAARSTNM--RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (444)
Q Consensus 307 ~al~~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~ 384 (444)
... +..+ .+...+..+...|.+.|++++|.+.+++. ...|+ ...|..+...+...|+++.|..++++.++..|
T Consensus 451 ~m~-~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p- 525 (697)
T PLN03081 451 SMS-ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT--VNMWAALLTACRIHKNLELGRLAAEKLYGMGP- 525 (697)
T ss_pred HHH-HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-
Confidence 998 6433 33457888999999999999999999875 45666 37899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013398 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (444)
Q Consensus 385 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 417 (444)
++...|..+..++...|++++|.+.++...+.
T Consensus 526 -~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 526 -EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred -CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 88888999999999999999999999887643
No 68
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.70 E-value=5e-16 Score=132.95 Aligned_cols=127 Identities=9% Similarity=0.005 Sum_probs=110.8
Q ss_pred HHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 013398 252 ATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR 331 (444)
Q Consensus 252 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g 331 (444)
...++++++.. |+ .++.+|.++... |++++|+..|++++ .++|+++.+|+++|.++...|
T Consensus 13 ~~~~~~al~~~-p~-------~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~P~~~~a~~~lg~~~~~~g 72 (144)
T PRK15359 13 EDILKQLLSVD-PE-------TVYASGYASWQE-----------GDYSRAVIDFSWLV-MAQPWSWRAHIALAGTWMMLK 72 (144)
T ss_pred HHHHHHHHHcC-HH-------HHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHh
Confidence 46778888843 22 245567776554 67899999999999 999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013398 332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401 (444)
Q Consensus 332 ~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~ 401 (444)
++++|+..|+++++++|+++ .+|+++|.++..+|++++|+..|+++++..| +++..+.++|.+...+
T Consensus 73 ~~~~A~~~y~~Al~l~p~~~-~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p--~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 73 EYTTAINFYGHALMLDASHP-EPVYQTGVCLKMMGEPGLAREAFQTAIKMSY--ADASWSEIRQNAQIMV 139 (144)
T ss_pred hHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHH
Confidence 99999999999999999995 9999999999999999999999999999999 8999999998887654
No 69
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.69 E-value=2.8e-14 Score=153.45 Aligned_cols=319 Identities=9% Similarity=-0.021 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHH--------HHHHH----hhhcCCCCCCcc-c-cccCc
Q 013398 65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKE--------FAIFL----LYCGGETCPPNL-R-SQMGS 130 (444)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~--------~a~~l----l~~~~~~~~~~~-~-~~~~~ 130 (444)
.+..+...|.+.|++++|+..|+++++....+++.....+... .+..+ ...+. .++. . ..+..
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~---~~d~~~~n~Li~ 267 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV---VGDTFVSCALID 267 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC---CccceeHHHHHH
Confidence 4455566788999999999999999876333332221111000 01111 11111 1111 1 23456
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHCC
Q 013398 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI-INRKERYHILALCYYGAG 209 (444)
Q Consensus 131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~g 209 (444)
.|.+.|++++|..++ + ...+.+...|+.+...|.+.|++++|+..|++..... ..+..++..+..++...|
T Consensus 268 ~y~k~g~~~~A~~vf-----~---~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 268 MYSKCGDIEDARCVF-----D---GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred HHHHCCCHHHHHHHH-----H---hCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 788889999998875 2 2335688899999999999999999999999886532 235668888999999999
Q ss_pred CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhh
Q 013398 210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI 289 (444)
Q Consensus 210 ~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~ 289 (444)
++++|.+.+...++....| +..++..+...+ .+.|+.++|...|++..+ ++ ...|..+..+|.+.
T Consensus 340 ~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y-~k~G~~~~A~~vf~~m~~---~d-----~~t~n~lI~~y~~~----- 404 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPL-DIVANTALVDLY-SKWGRMEDARNVFDRMPR---KN-----LISWNALIAGYGNH----- 404 (697)
T ss_pred chHHHHHHHHHHHHhCCCC-CeeehHHHHHHH-HHCCCHHHHHHHHHhCCC---CC-----eeeHHHHHHHHHHc-----
Confidence 9999999999998422333 444555455544 457899999999987654 22 34677777777654
Q ss_pred chHHHHhhHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hcCCCChHHHHHHHHHHHHc
Q 013398 290 TDFDRATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK---LEGGSNLKGWLLMARILSAQ 365 (444)
Q Consensus 290 ~~~~~~~~~~eA~~~~~~al~~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~~la~~l~~~ 365 (444)
|+.++|++.|++.. +.. ..|...+..+-.++...|++++|.+.|+...+ +.|+ ...|..+..++.+.
T Consensus 405 ------G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~--~~~y~~li~~l~r~ 475 (697)
T PLN03081 405 ------GRGTKAVEMFERMI-AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR--AMHYACMIELLGRE 475 (697)
T ss_pred ------CCHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--ccchHhHHHHHHhc
Confidence 67899999999988 542 33466778888889999999999999999975 4565 37888899999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 366 g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
|++++|.+.+++. ...| +...|..+...+...|+++.|...+++++++.|++.
T Consensus 476 G~~~eA~~~~~~~-~~~p---~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 476 GLLDEAYAMIRRA-PFKP---TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred CCHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 9999999998765 3445 567799999999999999999999999998888643
No 70
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=2e-15 Score=140.42 Aligned_cols=162 Identities=15% Similarity=0.012 Sum_probs=121.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcch
Q 013398 189 PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQ 268 (444)
Q Consensus 189 ~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~ 268 (444)
+.++..++.++.+|..+...|++++|+..|++++ ..+|+++..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~--~~~p~~~~~----------------------------------- 69 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALE--SRYPFSPYA----------------------------------- 69 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCchhH-----------------------------------
Confidence 4557788899999999999999999999999999 788876521
Q ss_pred hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHc--------CCHHHHH
Q 013398 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS---ILYRLSLEYAEQ--------RKLNAAH 337 (444)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~---a~~~lg~~~~~~--------g~~~~A~ 337 (444)
..+++.+|.++... +++++|+..|++++ +.+|+++. +++.+|.++... |++++|+
T Consensus 70 --~~a~~~la~~~~~~-----------~~~~~A~~~~~~~l-~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~ 135 (235)
T TIGR03302 70 --EQAQLDLAYAYYKS-----------GDYAEAIAAADRFI-RLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAF 135 (235)
T ss_pred --HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHH-HHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 12344455555433 45778888888888 88887776 678888888766 8899999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013398 338 YYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (444)
Q Consensus 338 ~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 417 (444)
+.|++++..+|++. .++..+..+.. . .+ ......+.+|.++...|++++|+..|+++++.
T Consensus 136 ~~~~~~~~~~p~~~-~~~~a~~~~~~----~-------------~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 136 EAFQELIRRYPNSE-YAPDAKKRMDY----L-------------RN--RLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHHHHHHCCCCh-hHHHHHHHHHH----H-------------HH--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999984 66543332211 1 11 11233457889999999999999999999999
Q ss_pred HHhh
Q 013398 418 LQVQ 421 (444)
Q Consensus 418 ~~~~ 421 (444)
.|+.
T Consensus 196 ~p~~ 199 (235)
T TIGR03302 196 YPDT 199 (235)
T ss_pred CCCC
Confidence 8865
No 71
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.69 E-value=3.6e-16 Score=133.85 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=110.2
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013398 302 LQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (444)
Q Consensus 302 ~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~ 381 (444)
...|++++ +++|++ ++++|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+..|++++.+
T Consensus 13 ~~~~~~al-~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLL-SVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-WRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH-HcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 46899999 999986 6789999999999999999999999999999 599999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013398 382 TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 382 ~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
+| +++.+++++|.++..+|++++|+..|++++++.|++.+.
T Consensus 88 ~p--~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 88 DA--SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred CC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99 999999999999999999999999999999999987653
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.69 E-value=2.6e-15 Score=148.37 Aligned_cols=210 Identities=18% Similarity=0.098 Sum_probs=160.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHH
Q 013398 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (444)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a 233 (444)
+|+++.+|..+|..+...|+++.+...+.++.+..|.+ .+..+..|.++...|++++|...+++++ ..+|++..+
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l--~~~P~~~~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLL--DDYPRDLLA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHH
Confidence 69999999999999999999999999999888777654 5677888999999999999999999999 899999876
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC
Q 013398 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (444)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~ 313 (444)
+.. +..+ ...+...++...+.++++...+.. +....++..+|.++..+ |++++|+..+++++ +++
T Consensus 80 ~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~~~-----------G~~~~A~~~~~~al-~~~ 144 (355)
T cd05804 80 LKL-HLGA-FGLGDFSGMRDHVARVLPLWAPEN-PDYWYLLGMLAFGLEEA-----------GQYDRAEEAARRAL-ELN 144 (355)
T ss_pred HHH-hHHH-HHhcccccCchhHHHHHhccCcCC-CCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hhC
Confidence 542 1111 112222233333344443222221 11234555667776554 67899999999999 999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
|+++.++..+|.++.+.|++++|+..+++++...|.++ ...|..+|.++..+|++++|+..+++++...|
T Consensus 145 p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 145 PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999887532 13466789999999999999999999987766
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=1.9e-14 Score=132.46 Aligned_cols=266 Identities=14% Similarity=0.058 Sum_probs=187.5
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH-----HHHHHHHHHH
Q 013398 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK-----ERYHILALCY 205 (444)
Q Consensus 131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~l 205 (444)
=|.-.++.++|+.++. .++..+|...++...||..+...|..+.||..=+-.+. .|+.+ .+.+.||.-|
T Consensus 44 NfLLs~Q~dKAvdlF~-----e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 44 NFLLSNQPDKAVDLFL-----EMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHHhhcCcchHHHHHH-----HHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 3445667788888763 24566788888888888888888888888886554443 46543 4677788888
Q ss_pred HHCCCchHHHHHHHHhhcCCCCCCCh-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhh
Q 013398 206 YGAGEDLVALNLLRTLLSGSEDPKCL-PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (444)
Q Consensus 206 ~~~g~~~~A~~~~~~al~~~~~P~~~-~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 284 (444)
+..|=++.|+..|...+ -.|+.. .+.-.+..++ +...+++.||+..++.....+.....-.+..+.-|+..+.
T Consensus 118 m~aGl~DRAE~~f~~L~---de~efa~~AlqqLl~IY-Q~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-- 191 (389)
T COG2956 118 MAAGLLDRAEDIFNQLV---DEGEFAEGALQQLLNIY-QATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-- 191 (389)
T ss_pred HHhhhhhHHHHHHHHHh---cchhhhHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh--
Confidence 88888888888888877 235543 4554455554 5567788888888888875433221111222222222221
Q ss_pred hhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 013398 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (444)
Q Consensus 285 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~ 364 (444)
...+.+.|+..+++|+ +-||++..+-..+|.+....|+++.|++.++++++-||+.-.++...|..+|..
T Consensus 192 ---------~~~~~d~A~~~l~kAl-qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 192 ---------ASSDVDRARELLKKAL-QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred ---------hhhhHHHHHHHHHHHH-hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 2357788888888888 888888888888888888888888888888888888888744677788888888
Q ss_pred ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013398 365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 365 ~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
+|+.++.+..+.++.+.++ ...+-..++.+.....-.++|.....+.+.-.|.-
T Consensus 262 lg~~~~~~~fL~~~~~~~~---g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~ 315 (389)
T COG2956 262 LGKPAEGLNFLRRAMETNT---GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM 315 (389)
T ss_pred hCCHHHHHHHHHHHHHccC---CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH
Confidence 8888888888888888877 34555566666666777777777777777666643
No 74
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.68 E-value=1.5e-14 Score=149.37 Aligned_cols=338 Identities=14% Similarity=0.096 Sum_probs=242.7
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHH-------------HHHHHHHHhhhcCCCCCCc----
Q 013398 61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKL-------------QKEFAIFLLYCGGETCPPN---- 123 (444)
Q Consensus 61 ~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l-------------~~~~a~~ll~~~~~~~~~~---- 123 (444)
.+..++-.+|.+|...-+...|...|++|.++ |+...... ...+.. .++.+ +.++..
T Consensus 490 ~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL----Datdaeaaaa~adtyae~~~we~a~~I-~l~~~-qka~a~~~k~ 563 (1238)
T KOG1127|consen 490 SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL----DATDAEAAAASADTYAEESTWEEAFEI-CLRAA-QKAPAFACKE 563 (1238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchhhhhHHHHHHHhhccccHHHHHHH-HHHHh-hhchHHHHHh
Confidence 35679999999999999999999999999999 65432111 111122 11111 111111
Q ss_pred cccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 013398 124 LRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILAL 203 (444)
Q Consensus 124 ~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 203 (444)
.....+..|...+++-.|+..+ +.++..+|.|...|.-+|.+|.+.|++..|+..|.+|..++|.+.-..|..+.
T Consensus 564 nW~~rG~yyLea~n~h~aV~~f-----QsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~ 638 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEF-----QSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAV 638 (1238)
T ss_pred hhhhccccccCccchhhHHHHH-----HHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHH
Confidence 1123455666778888888775 66778889999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCchHHHHHHHHhhcCCCCCCCh-------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-------------
Q 013398 204 CYYGAGEDLVALNLLRTLLSGSEDPKCL-------PALLIASKICGEYPDLAEEGATFASRALECLG------------- 263 (444)
Q Consensus 204 ~l~~~g~~~~A~~~~~~al~~~~~P~~~-------~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~------------- 263 (444)
+...+|+|.+|+..+...+ ....+.. +.++..+..++. .|-...|..++++.++.+-
T Consensus 639 ~ecd~GkYkeald~l~~ii--~~~s~e~~~q~gLaE~~ir~akd~~~-~gf~~kavd~~eksie~f~~~l~h~~~~~~~~ 715 (1238)
T KOG1127|consen 639 MECDNGKYKEALDALGLII--YAFSLERTGQNGLAESVIRDAKDSAI-TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQ 715 (1238)
T ss_pred HHHHhhhHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 9999999999999988887 3333222 222222222211 1223334444443332210
Q ss_pred ---------------CCcch-------------------------------------hhhHHHHHhhhhhhhhhhhhhch
Q 013398 264 ---------------DGCDQ-------------------------------------MESTANCLLGISLSAQSKVAITD 291 (444)
Q Consensus 264 ---------------~~~~~-------------------------------------~~~~a~~~lg~~~~~~~~~~~~~ 291 (444)
|+..+ ..+..|+++|+.|........
T Consensus 716 Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~-- 793 (1238)
T KOG1127|consen 716 WIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLG-- 793 (1238)
T ss_pred HHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcC--
Confidence 00000 001224444444333111000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHH
Q 013398 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (444)
Q Consensus 292 ~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA 371 (444)
+.+.+-..|+.++++++ +++.++...|+.||.+ ...|++.-|..+|-+++.++|.+ ...|.++|.+.....+++-|
T Consensus 794 -et~~~~~~Ai~c~KkaV-~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~-~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 794 -ETMKDACTAIRCCKKAV-SLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTC-HCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred -CcchhHHHHHHHHHHHH-HHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccc-hhheeccceeEEecccHHHh
Confidence 01123358999999999 9999999999999988 55689999999999999999999 59999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013398 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
...+.++..++| +|...|...+.+....|+.-+++..+.+--+++.+
T Consensus 870 ~~af~~~qSLdP--~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~ 916 (1238)
T KOG1127|consen 870 EPAFSSVQSLDP--LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSK 916 (1238)
T ss_pred hHHHHhhhhcCc--hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcc
Confidence 999999999999 99999999999999999999999999986666553
No 75
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.67 E-value=1.3e-15 Score=137.46 Aligned_cols=124 Identities=17% Similarity=0.167 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHH-HHccC--HHHHH
Q 013398 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL-SAQKR--YEDAE 372 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l-~~~g~--~~eA~ 372 (444)
++.++++..+++++ +.+|+|+++|+.||.++...|++++|+..|+++++++|++ ...+..+|.++ ...|+ +++|.
T Consensus 53 ~~~~~~i~~l~~~L-~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKI-RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-AELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCCCcHHHH
Confidence 45689999999999 9999999999999999999999999999999999999999 49999999975 67787 59999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 373 ~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
..++++++.+| ++..+++++|..+..+|++++|+..|++++++.|.+.+
T Consensus 131 ~~l~~al~~dP--~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 131 EMIDKALALDA--NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHhCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999 89999999999999999999999999999999987654
No 76
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.67 E-value=1e-12 Score=144.42 Aligned_cols=261 Identities=11% Similarity=0.003 Sum_probs=203.1
Q ss_pred CccccCCCcHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHH
Q 013398 129 GSSFVPRNNIEEAILLLMILLRKVALKRI-EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI-INRKERYHILALCYY 206 (444)
Q Consensus 129 ~~~~~~~~~~~eAi~~l~~~~~~~~l~~~-p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~ 206 (444)
...|...|++++|..++. ...... ..|...|..+-..|.+.|++++|+..|++..... ..+...|..+...|.
T Consensus 479 I~~y~k~G~vd~A~~vf~-----eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~ 553 (1060)
T PLN03218 479 ISTCAKSGKVDAMFEVFH-----EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553 (1060)
T ss_pred HHHHHhCcCHHHHHHHHH-----HHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345677889999988762 222222 2377889999999999999999999999886543 234778999999999
Q ss_pred HCCCchHHHHHHHHhhc--CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhh
Q 013398 207 GAGEDLVALNLLRTLLS--GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (444)
Q Consensus 207 ~~g~~~~A~~~~~~al~--~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 284 (444)
+.|++++|...|++..+ ..+.|+. ..+..+...| .+.|++++|...|++..+...+. ....|..+..+|.+
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~-vTynaLI~ay-~k~G~ldeA~elf~~M~e~gi~p----~~~tynsLI~ay~k- 626 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDH-ITVGALMKAC-ANAGQVDRAKEVYQMIHEYNIKG----TPEVYTIAVNSCSQ- 626 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHH-HHCCCHHHHHHHHHHHHHcCCCC----ChHHHHHHHHHHHh-
Confidence 99999999999999862 1356764 3444444443 45789999999999998853211 13566667767655
Q ss_pred hhhhhchHHHHhhHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 013398 285 SKVAITDFDRATRQAKALQALVSAARST--NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL 362 (444)
Q Consensus 285 ~~~~~~~~~~~~~~~eA~~~~~~al~~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l 362 (444)
.|+.++|++.|++.. +. .|+ ...+..+...+.+.|++++|.+.+++..+.........|..+...|
T Consensus 627 ----------~G~~deAl~lf~eM~-~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay 694 (1060)
T PLN03218 627 ----------KGDWDFALSIYDDMK-KKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694 (1060)
T ss_pred ----------cCCHHHHHHHHHHHH-HcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 467899999999998 65 454 6788899999999999999999999998854322248999999999
Q ss_pred HHccCHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013398 363 SAQKRYEDAETILNAALDQ--TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 363 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
.+.|++++|+..|++..+. .| +...|..+...+.+.|++++|++.+++..+
T Consensus 695 ~k~G~~eeA~~lf~eM~~~g~~P---dvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 695 SNAKNWKKALELYEDIKSIKLRP---TVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988754 56 667899999999999999999999998764
No 77
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=5.5e-14 Score=129.52 Aligned_cols=230 Identities=16% Similarity=0.132 Sum_probs=156.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH-----HHHHHHHH
Q 013398 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-----ALLIASKI 240 (444)
Q Consensus 166 ~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~-----a~~~~~~~ 240 (444)
..|.-+.-..+.++|++.|-.+++.+|...++++.||.++.+.|..+.|+.+-+..+ ..|+.+. +...+|.-
T Consensus 40 v~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~---~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 40 VKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL---ESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHHH
Confidence 345555556777777777777777777777777777777777777777777777666 4666432 33334443
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH--
Q 013398 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS-- 318 (444)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~-- 318 (444)
|...|-+|.|...|....+. +. ....|.-.|-.+|... .++++||+.-++.+ ++.|++..
T Consensus 117 -ym~aGl~DRAE~~f~~L~de-~e----fa~~AlqqLl~IYQ~t-----------reW~KAId~A~~L~-k~~~q~~~~e 178 (389)
T COG2956 117 -YMAAGLLDRAEDIFNQLVDE-GE----FAEGALQQLLNIYQAT-----------REWEKAIDVAERLV-KLGGQTYRVE 178 (389)
T ss_pred -HHHhhhhhHHHHHHHHHhcc-hh----hhHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHH-HcCCccchhH
Confidence 23456777777777766652 22 1234566666666664 34777777777777 77776643
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc-HHHHHHH
Q 013398 319 ---ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ-GELLRTK 394 (444)
Q Consensus 319 ---a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l 394 (444)
.+.-|+..+....+.+.|+..++||+.-||++ +.+-..+|.+...+|+|+.|+..++++++.+| +. +++.-.+
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c-vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~--~yl~evl~~L 255 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQADKKC-VRASIILGRVELAKGDYQKAVEALERVLEQNP--EYLSEVLEML 255 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-eehhhhhhHHHHhccchHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence 34567777777777777777777777777777 47777777777777777777777777777777 44 5666677
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHH
Q 013398 395 AKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
-.+|..+|+.++.+..++++.+..+
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccC
Confidence 7777777777777777777766544
No 78
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=6.7e-13 Score=132.09 Aligned_cols=307 Identities=15% Similarity=0.049 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013398 65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL 144 (444)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~ 144 (444)
.+..-+..+.+.+-++=|.++|..+|+. .|....-+ ...+.+- . ..|..++-..+
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv----fp~k~slW-lra~~~e-k-------------------~hgt~Esl~Al 572 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV----FPCKKSLW-LRAAMFE-K-------------------SHGTRESLEAL 572 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh----ccchhHHH-HHHHHHH-H-------------------hcCcHHHHHHH
Confidence 3444456778899999999999999998 55432211 1111110 0 01122222222
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcC
Q 013398 145 LMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG 224 (444)
Q Consensus 145 l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~ 224 (444)
+ +.++...|..+..|.+.+.-+-..|+...|...+.++++.+|++.+.|+.--.+.....++++|...|.++-
T Consensus 573 l-----qkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar-- 645 (913)
T KOG0495|consen 573 L-----QKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR-- 645 (913)
T ss_pred H-----HHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh--
Confidence 2 233455566666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHH
Q 013398 225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (444)
Q Consensus 225 ~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~ 304 (444)
...|..- +++-.+.+ ..-++..++|+..++++|+.+|.- ...|+.+|.++.++ ++.+.|.+.
T Consensus 646 ~~sgTeR-v~mKs~~~-er~ld~~eeA~rllEe~lk~fp~f-----~Kl~lmlGQi~e~~-----------~~ie~aR~a 707 (913)
T KOG0495|consen 646 SISGTER-VWMKSANL-ERYLDNVEEALRLLEEALKSFPDF-----HKLWLMLGQIEEQM-----------ENIEMAREA 707 (913)
T ss_pred ccCCcch-hhHHHhHH-HHHhhhHHHHHHHHHHHHHhCCch-----HHHHHHHhHHHHHH-----------HHHHHHHHH
Confidence 5555422 22222221 233456666666666666655431 34566666666543 345556666
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013398 305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (444)
Q Consensus 305 ~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~ 384 (444)
|..-+ +.-|+.+..|..|+.+-.+.|++-.|...+.++.-.||++. ..|...-.+-...|..+.|.....+||+..|+
T Consensus 708 Y~~G~-k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~-~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 708 YLQGT-KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA-LLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHhcc-ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc-hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 66666 56666666666666666666666666666666666666653 55555555555556666666666666555553
Q ss_pred C----------------------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 385 W----------------------------EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 385 ~----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
. .|+.++...|.++-...+++.|.+.|.+++.+.|+..+
T Consensus 786 sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 786 SGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred cchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 1 23444555555666666666666666666666665544
No 79
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=7.8e-15 Score=138.97 Aligned_cols=175 Identities=18% Similarity=0.094 Sum_probs=119.1
Q ss_pred HHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhh
Q 013398 200 ILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGI 279 (444)
Q Consensus 200 ~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~ 279 (444)
.-+.++.-.|++++|.+.--..+ ++++.+.++++..+.+. ...+..+.|+.+|+++|...|.+.+. ..+....-.
T Consensus 174 lka~cl~~~~~~~~a~~ea~~il--kld~~n~~al~vrg~~~-yy~~~~~ka~~hf~qal~ldpdh~~s--k~~~~~~k~ 248 (486)
T KOG0550|consen 174 LKAECLAFLGDYDEAQSEAIDIL--KLDATNAEALYVRGLCL-YYNDNADKAINHFQQALRLDPDHQKS--KSASMMPKK 248 (486)
T ss_pred hhhhhhhhcccchhHHHHHHHHH--hcccchhHHHHhccccc-ccccchHHHHHHHhhhhccChhhhhH--HhHhhhHHH
Confidence 34555555566666666655555 56666655555443332 23445556666666666533222110 011111111
Q ss_pred hhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHH
Q 013398 280 SLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355 (444)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 355 (444)
+.. .+....+..+.|++.+|.+.|..++ .+||+|.. .++++|.+..+.|++.+|+..++.|++|||.. ..++
T Consensus 249 le~--~k~~gN~~fk~G~y~~A~E~Yteal-~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy-ikal 324 (486)
T KOG0550|consen 249 LEV--KKERGNDAFKNGNYRKAYECYTEAL-NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY-IKAL 324 (486)
T ss_pred HHH--HHhhhhhHhhccchhHHHHHHHHhh-cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH-HHHH
Confidence 100 0111112245688999999999999 99998754 57899999999999999999999999999998 6999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 356 LLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 356 ~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
+..|.++..++++++|+..|++|++...
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999998876
No 80
>PLN03077 Protein ECB2; Provisional
Probab=99.64 E-value=7.1e-13 Score=145.94 Aligned_cols=117 Identities=9% Similarity=0.039 Sum_probs=97.3
Q ss_pred HHhhHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHH
Q 013398 294 RATRQAKALQALVSAARSTNM--RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA 371 (444)
+.|+.++|.+.|++.. +..+ .+...+..+..++.+.|++++|.+.+++. .+.|+ ...|..|-..+...|+.+.|
T Consensus 601 ~~g~v~ea~~~f~~M~-~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd--~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 601 RSGMVTQGLEYFHSME-EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD--PAVWGALLNACRIHRHVELG 676 (857)
T ss_pred hcChHHHHHHHHHHHH-HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHHcCChHHH
Confidence 3477899999999887 5543 23467888899999999999999999885 46777 37888887788888999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013398 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
....++++++.| ++...+..++.+|...|++++|....+...+
T Consensus 677 e~~a~~l~~l~p--~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 677 ELAAQHIFELDP--NSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHhhCC--CCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999999 8888999999999999999999888877654
No 81
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=1.8e-12 Score=129.11 Aligned_cols=261 Identities=17% Similarity=0.073 Sum_probs=228.0
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Q 013398 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (444)
Q Consensus 131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~ 210 (444)
.+...+-++-|+..| ..+++..|....+|......-..-|-.++-...|++++...|.....|...+..+...|+
T Consensus 525 ~~~k~~~~~carAVy-----a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agd 599 (913)
T KOG0495|consen 525 SCEKRPAIECARAVY-----AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGD 599 (913)
T ss_pred HHHhcchHHHHHHHH-----HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCC
Confidence 445556666666654 446788899999999988888888999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc
Q 013398 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT 290 (444)
Q Consensus 211 ~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~ 290 (444)
...|..++.++. ..+|++.+.++....+.. ...++++|...+.++....+. .+.|+--......
T Consensus 600 v~~ar~il~~af--~~~pnseeiwlaavKle~-en~e~eraR~llakar~~sgT------eRv~mKs~~~er~------- 663 (913)
T KOG0495|consen 600 VPAARVILDQAF--EANPNSEEIWLAAVKLEF-ENDELERARDLLAKARSISGT------ERVWMKSANLERY------- 663 (913)
T ss_pred cHHHHHHHHHHH--HhCCCcHHHHHHHHHHhh-ccccHHHHHHHHHHHhccCCc------chhhHHHhHHHHH-------
Confidence 999999999999 899999999987766654 457899999999999985433 2344433332222
Q ss_pred hHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH
Q 013398 291 DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (444)
Q Consensus 291 ~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e 370 (444)
++..++|+..+++++ +.-|+.+..|..+|+++.++++++.|...|...++.-|... ..|..|+.+-.+.|..-.
T Consensus 664 ----ld~~eeA~rllEe~l-k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-pLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 664 ----LDNVEEALRLLEEAL-KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-PLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred ----hhhHHHHHHHHHHHH-HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc-hHHHHHHHHHHHhcchhh
Confidence 356899999999999 99999999999999999999999999999999999999995 999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013398 371 AETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 371 A~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
|...++++.-.+| ++..+|...-....+.|..++|.....+||.=+|+
T Consensus 738 AR~ildrarlkNP--k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 738 ARSILDRARLKNP--KNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHHHHHHHHhcCC--CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 9999999999999 89999999999999999999999999999986654
No 82
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.62 E-value=5.7e-14 Score=126.68 Aligned_cols=150 Identities=15% Similarity=0.057 Sum_probs=120.0
Q ss_pred HHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhh
Q 013398 203 LCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLS 282 (444)
Q Consensus 203 ~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 282 (444)
..|+..|+++......++.. +|... +...++.++++..++++++..|++ ..+|+.+|.+|.
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~----~~~~~----------~~~~~~~~~~i~~l~~~L~~~P~~-----~~~w~~Lg~~~~ 84 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLA----DPLHQ----------FASQQTPEAQLQALQDKIRANPQN-----SEQWALLGEYYL 84 (198)
T ss_pred HHHHHcchHHHHHHHHHHHh----Ccccc----------ccCchhHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHH
Confidence 34566666666544443333 33321 112456678888888888865544 568888888886
Q ss_pred hhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhcCCCChHHHHHHH
Q 013398 283 AQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEY-AEQRK--LNAAHYYAKMLLKLEGGSNLKGWLLMA 359 (444)
Q Consensus 283 ~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~-~~~g~--~~~A~~~~~~al~l~P~~~~~~~~~la 359 (444)
.. |++++|+.+|++++ +++|+++.++..+|.++ ...|+ +++|...++++++++|+++ .++.++|
T Consensus 85 ~~-----------g~~~~A~~a~~~Al-~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~-~al~~LA 151 (198)
T PRK10370 85 WR-----------NDYDNALLAYRQAL-QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV-TALMLLA 151 (198)
T ss_pred HC-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh-hHHHHHH
Confidence 54 67899999999999 99999999999999975 67787 5999999999999999994 9999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhcCC
Q 013398 360 RILSAQKRYEDAETILNAALDQTGK 384 (444)
Q Consensus 360 ~~l~~~g~~~eA~~~~~~al~~~P~ 384 (444)
.++..+|+|++|+.+|+++++..|.
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999883
No 83
>PLN03077 Protein ECB2; Provisional
Probab=99.60 E-value=3.8e-12 Score=140.18 Aligned_cols=336 Identities=10% Similarity=0.003 Sum_probs=188.2
Q ss_pred HHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCC
Q 013398 16 KAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWN 95 (444)
Q Consensus 16 ~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~ 95 (444)
.-.+|.+.|++++|...|....+ ++. ..+..+...|.+.|++++|+..|+++....
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~----------~d~------------~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-- 283 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPR----------RDC------------ISWNAMISGYFENGECLEGLELFFTMRELS-- 283 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----------CCc------------chhHHHHHHHHhCCCHHHHHHHHHHHHHcC--
Confidence 34556677777777776654321 111 133444456778888888888888887662
Q ss_pred CChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 013398 96 LDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG 175 (444)
Q Consensus 96 ~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g 175 (444)
..|+... + ..+ + ..+...|+.+.|..++... .-...+.|..+|+.+...|.+.|
T Consensus 284 ~~Pd~~t-y-~~l----l----------------~a~~~~g~~~~a~~l~~~~----~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 284 VDPDLMT-I-TSV----I----------------SACELLGDERLGREMHGYV----VKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred CCCChhH-H-HHH----H----------------HHHHhcCChHHHHHHHHHH----HHhCCccchHHHHHHHHHHHhcC
Confidence 2232210 0 000 0 1122234444554443111 11112234556666666666666
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHH
Q 013398 176 DLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFA 255 (444)
Q Consensus 176 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~ 255 (444)
++++|...|++... .+...|..+...|.+.|++++|+..|++..+....|+.......+. . +...|+.++|...+
T Consensus 338 ~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~-a-~~~~g~~~~a~~l~ 412 (857)
T PLN03077 338 SWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS-A-CACLGDLDVGVKLH 412 (857)
T ss_pred CHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH-H-HhccchHHHHHHHH
Confidence 66666666665442 2344566666666666666666666665442234455433222221 1 12345555666665
Q ss_pred HHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc--------------------hHHHHhhHHHHHHHHHHHHHhhCCC
Q 013398 256 SRALECLGDGCDQMESTANCLLGISLSAQSKVAIT--------------------DFDRATRQAKALQALVSAARSTNMR 315 (444)
Q Consensus 256 ~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~--------------------~~~~~~~~~eA~~~~~~al~~~~P~ 315 (444)
..+++.-...+ ...+..+-..|.+.|+...+ .+.+.|+.++|+..|++.+....|+
T Consensus 413 ~~~~~~g~~~~----~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd 488 (857)
T PLN03077 413 ELAERKGLISY----VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN 488 (857)
T ss_pred HHHHHhCCCcc----hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC
Confidence 55555311110 12222333333322211100 0123467788999998888333454
Q ss_pred CHHHHHHHH----------------------------------HHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 013398 316 DLSILYRLS----------------------------------LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (444)
Q Consensus 316 ~~~a~~~lg----------------------------------~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~ 361 (444)
.......++ ..|.+.|++++|...|++. .| + ...|..+...
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~-d-~~s~n~lI~~ 563 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EK-D-VVSWNILLTG 563 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CC-C-hhhHHHHHHH
Confidence 443333332 5567778888888888775 44 3 4889999999
Q ss_pred HHHccCHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013398 362 LSAQKRYEDAETILNAALDQ--TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (444)
Q Consensus 362 l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 418 (444)
+...|+.++|+..|++..+. .| | ...+..+-..+...|..++|+..|+...+-.
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~P--d-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNP--D-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCC--C-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 99999999999999988764 46 3 3445556667888999999999999887443
No 84
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.59 E-value=2.3e-13 Score=122.77 Aligned_cols=175 Identities=18% Similarity=0.070 Sum_probs=90.2
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 013398 180 LATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRAL 259 (444)
Q Consensus 180 A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al 259 (444)
+...+-+....+|++.++ .+++..+...|+-+.+..+..+++ ..+|++...+...+.... ..|++.+|+..++++.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAA 127 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHh
Confidence 444444455556666666 666666666666666666666655 455555544322222211 1223333333333333
Q ss_pred HHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 013398 260 ECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYY 339 (444)
Q Consensus 260 ~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 339 (444)
...|++ +.+|..+|.+|.+ .|++++|...|.+++ ++.|+++.+..|+|..+.-.|+++.|..+
T Consensus 128 ~l~p~d-----~~~~~~lgaaldq-----------~Gr~~~Ar~ay~qAl-~L~~~~p~~~nNlgms~~L~gd~~~A~~l 190 (257)
T COG5010 128 RLAPTD-----WEAWNLLGAALDQ-----------LGRFDEARRAYRQAL-ELAPNEPSIANNLGMSLLLRGDLEDAETL 190 (257)
T ss_pred ccCCCC-----hhhhhHHHHHHHH-----------ccChhHHHHHHHHHH-HhccCCchhhhhHHHHHHHcCCHHHHHHH
Confidence 321111 2233334444432 234556666666666 66666666666666666666666666666
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHH
Q 013398 340 AKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILN 376 (444)
Q Consensus 340 ~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~ 376 (444)
+.++...-+.+. .+..+++.+...+|++++|..+..
T Consensus 191 ll~a~l~~~ad~-~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 191 LLPAYLSPAADS-RVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHhCCCCch-HHHHHHHHHHhhcCChHHHHhhcc
Confidence 666655555443 566666666666666666655543
No 85
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.58 E-value=2.8e-14 Score=120.75 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=112.0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013398 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~ 382 (444)
+.|++++ .++|++..+.+.+|..+...|++++|+..+++++.++|+++ .+|..+|.++..+|++++|+.+++++++.+
T Consensus 4 ~~~~~~l-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLL-GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS-RYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHH-cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4688999 99999999999999999999999999999999999999995 999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 383 P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
| +++..++++|.++...|++++|+..|++++++.|+...
T Consensus 82 p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 P--DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred C--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9 89999999999999999999999999999999986654
No 86
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.58 E-value=1.3e-13 Score=145.26 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=107.0
Q ss_pred HHHHhcCCHHHHHHHHHhh---cCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCC
Q 013398 169 FAFSIAGDLSSLATQIEEL---LPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYP 245 (444)
Q Consensus 169 ~~l~~~g~~~~A~~~~~~a---l~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~ 245 (444)
.++.+.|....+.+.+-++ ..--|.+++++++||.+..+.|++++|+..++.++ .+.|++..++...+.++.+ .
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~--~~~Pd~~~a~~~~a~~L~~-~ 133 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIH--QRFPDSSEAFILMLRGVKR-Q 133 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH--hhCCCcHHHHHHHHHHHHH-h
Confidence 3444444443333333333 33457778888888888888888888888888888 8888888877666555422 2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013398 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (444)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~ 325 (444)
+++++|+..+++++ ..+|+++.+++.+|.
T Consensus 134 --------------------------------------------------~~~eeA~~~~~~~l-~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 134 --------------------------------------------------QGIEAGRAEIELYF-SGGSSSAREILLEAK 162 (694)
T ss_pred --------------------------------------------------ccHHHHHHHHHHHh-hcCCCCHHHHHHHHH
Confidence 34566666666666 666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 326 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
++.++|++++|+..|+++++.+|+++ .+|..+|.++...|+.++|...|++|++...
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~-~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFE-NGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 66666666666666666666666663 6666666666666666666666666666654
No 87
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.58 E-value=1.7e-13 Score=138.12 Aligned_cols=227 Identities=17% Similarity=0.108 Sum_probs=197.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013398 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (444)
Q Consensus 158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~ 237 (444)
|.-...--.++.++...|=...|+..|++ .+.|-....+|...|+..+|.....+-+ . +|.++..|-.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~l--e-k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQEL--E-KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHh--c-CCCcchhHHHh
Confidence 34445566899999999999999999985 5778889999999999999999999999 6 67777777777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH
Q 013398 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (444)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~ 317 (444)
|.+.. + -.+|+++.+..+. .++.|+..+|..... .+++.++.+.++..+ +++|-..
T Consensus 464 GDv~~----d----~s~yEkawElsn~----~sarA~r~~~~~~~~-----------~~~fs~~~~hle~sl-~~nplq~ 519 (777)
T KOG1128|consen 464 GDVLH----D----PSLYEKAWELSNY----ISARAQRSLALLILS-----------NKDFSEADKHLERSL-EINPLQL 519 (777)
T ss_pred hhhcc----C----hHHHHHHHHHhhh----hhHHHHHhhcccccc-----------chhHHHHHHHHHHHh-hcCccch
Confidence 77642 2 2788999886433 235677787776543 357899999999999 9999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013398 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~ 397 (444)
..||.+|.+..+.++.+.|.++|.+++.++|++ .++|++++..|...|+-.+|...+.+|++-+- +++.+|-|.-.+
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~-~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~--~~w~iWENymlv 596 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN-AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY--QHWQIWENYMLV 596 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc-hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC--CCCeeeechhhh
Confidence 999999999999999999999999999999999 59999999999999999999999999999987 899999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 398 QLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 398 ~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
....|.+++|+.+|.+.+++.++-.
T Consensus 597 svdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 597 SVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999877544
No 88
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.55 E-value=2.3e-13 Score=143.31 Aligned_cols=134 Identities=16% Similarity=0.066 Sum_probs=126.0
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013398 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
..++.+||.+.... |++++|...+++++ +++|++..++.+++.++.+.+++++|+..+++++..+|++
T Consensus 86 ~~~~~~La~i~~~~-----------g~~~ea~~~l~~~~-~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~ 153 (694)
T PRK15179 86 ELFQVLVARALEAA-----------HRSDEGLAVWRGIH-QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS 153 (694)
T ss_pred HHHHHHHHHHHHHc-----------CCcHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC
Confidence 46778888877554 67899999999999 9999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013398 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
..+++.+|.++..+|+|++|+.+|++++..+| ++..++..+|.++...|+.++|..+|+++++..-
T Consensus 154 -~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p--~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 154 -AREILLEAKSWDEIGQSEQADACFERLSRQHP--EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred -HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 59999999999999999999999999999999 8999999999999999999999999999998654
No 89
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.53 E-value=1.3e-13 Score=116.68 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=104.1
Q ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013398 311 STN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (444)
Q Consensus 311 ~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~ 389 (444)
.+. |++-+..|.+|..+...|++++|.+.|+-...++|.+ ...|++||.++..+|+|++|+..|.+|+.++| +++.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp~ 104 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAPQ 104 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCch
Confidence 778 8899999999999999999999999999999999999 59999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 390 ~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
.+++.|.++...|+.+.|.+.|+.++..+.+++
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 999999999999999999999999999995443
No 90
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.53 E-value=1e-12 Score=118.61 Aligned_cols=172 Identities=20% Similarity=0.092 Sum_probs=154.6
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH
Q 013398 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (444)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~ 232 (444)
...++|+|.++ ..+...+...|+-+.+..+..++.-.+|.+.+....+|....+.|++.+|+..++++. .++|++..
T Consensus 59 ~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~~ 135 (257)
T COG5010 59 AVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA--RLAPTDWE 135 (257)
T ss_pred HHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh--ccCCCChh
Confidence 34678999999 9999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh
Q 013398 233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST 312 (444)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~ 312 (444)
++..+|.+ +.+.|++++|...|.+++++.+.+ ..+..++|+.+.-. |+++.|...+..+. ..
T Consensus 136 ~~~~lgaa-ldq~Gr~~~Ar~ay~qAl~L~~~~-----p~~~nNlgms~~L~-----------gd~~~A~~lll~a~-l~ 197 (257)
T COG5010 136 AWNLLGAA-LDQLGRFDEARRAYRQALELAPNE-----PSIANNLGMSLLLR-----------GDLEDAETLLLPAY-LS 197 (257)
T ss_pred hhhHHHHH-HHHccChhHHHHHHHHHHHhccCC-----chhhhhHHHHHHHc-----------CCHHHHHHHHHHHH-hC
Confidence 99877655 577899999999999999976655 35778889887654 67999999999999 88
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013398 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (444)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 345 (444)
-+.|..+..||+.+...+|++++|.+...+=+.
T Consensus 198 ~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 198 PAADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred CCCchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 888999999999999999999999998776543
No 91
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=8.6e-14 Score=127.72 Aligned_cols=109 Identities=12% Similarity=0.076 Sum_probs=103.5
Q ss_pred HHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHH
Q 013398 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (444)
Q Consensus 293 ~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~ 372 (444)
.+.++|.+|+..|.+|+ +++|.|+-.|.+.+.+|.++|.++.|++.++.|+.+||.+ +.+|..||.++..+|+|++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI-~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAI-ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHccCcHHHHH
Confidence 45688999999999999 9999999999999999999999999999999999999999 699999999999999999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013398 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (444)
Q Consensus 373 ~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~ 405 (444)
..|++||+++| +|...+.++..+..++++.+
T Consensus 170 ~aykKaLeldP--~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 170 EAYKKALELDP--DNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHhhhccCC--CcHHHHHHHHHHHHHhcCCC
Confidence 99999999999 89888889988888887776
No 92
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.51 E-value=1.1e-12 Score=139.27 Aligned_cols=215 Identities=13% Similarity=0.037 Sum_probs=175.3
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHH
Q 013398 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (444)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a 233 (444)
..-.|.+..++..|..++...|++++|++.++.+++.+|+...+|+.+|.++.+.+++.+|..+ .++ ..-|++.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l--~~~~~~~-- 97 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI--DSFSQNL-- 97 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh--hhccccc--
Confidence 3456889999999999999999999999999999999999999999999999999999888877 777 4544432
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC
Q 013398 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (444)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~ 313 (444)
++ .++.++...+...+.+ ..|++.+|.||.+. |+.++|...|++++ ++|
T Consensus 98 -------------~~-~~ve~~~~~i~~~~~~-----k~Al~~LA~~Ydk~-----------g~~~ka~~~yer~L-~~D 146 (906)
T PRK14720 98 -------------KW-AIVEHICDKILLYGEN-----KLALRTLAEAYAKL-----------NENKKLKGVWERLV-KAD 146 (906)
T ss_pred -------------ch-hHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHc-----------CChHHHHHHHHHHH-hcC
Confidence 12 3334444333324333 35899999999764 67899999999999 999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH-
Q 013398 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR- 392 (444)
Q Consensus 314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~- 392 (444)
|+|+.+++++|..|... ++++|+.++.+|+.. +...++|.++..++.+.+..+| ++...++
T Consensus 147 ~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~--~d~d~f~~ 208 (906)
T PRK14720 147 RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS--DDFDFFLR 208 (906)
T ss_pred cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc--ccchHHHH
Confidence 99999999999999999 999999999999886 3345789999999999999999 6554422
Q ss_pred -------HHH------------HHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 393 -------TKA------------KVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 393 -------~la------------~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
.++ ..+...+++++++..++.+|++.|++..
T Consensus 209 i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 209 IERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 223 5566777899999999999998887544
No 93
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.49 E-value=5.4e-11 Score=118.88 Aligned_cols=337 Identities=18% Similarity=0.130 Sum_probs=233.6
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhC
Q 013398 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~ 91 (444)
++|.+.+-.++.++|....+.++.+|..+ |++ .+.+...|..+...|+.++|....+.+++
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~--------~eH-----------geslAmkGL~L~~lg~~~ea~~~vr~glr 69 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKF--------PEH-----------GESLAMKGLTLNCLGKKEEAYELVRLGLR 69 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhC--------Ccc-----------chhHHhccchhhcccchHHHHHHHHHHhc
Confidence 56788888889999999999999998853 332 23566677788899999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013398 92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF 171 (444)
Q Consensus 92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l 171 (444)
. |+.+.- -..-++. ++....+|+|||..+ +.++...|+|..+|..++...
T Consensus 70 ~----d~~S~v-CwHv~gl--------------------~~R~dK~Y~eaiKcy-----~nAl~~~~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 70 N----DLKSHV-CWHVLGL--------------------LQRSDKKYDEAIKCY-----RNALKIEKDNLQILRDLSLLQ 119 (700)
T ss_pred c----Ccccch-hHHHHHH--------------------HHhhhhhHHHHHHHH-----HHHHhcCCCcHHHHHHHHHHH
Confidence 7 665421 1122221 223345799999875 567888999999999999999
Q ss_pred HhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCC--CCC-----hHHHHHHHHHHhcC
Q 013398 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSED--PKC-----LPALLIASKICGEY 244 (444)
Q Consensus 172 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~--P~~-----~~a~~~~~~~~~~~ 244 (444)
.++|+++.....=.+.+++.|..-..|+.++.++.-.|.+..|....+.-.+ ..+ |+. ....+....+.. .
T Consensus 120 ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~-t~~~~~s~~~~e~se~~Ly~n~i~~-E 197 (700)
T KOG1156|consen 120 IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEK-TQNTSPSKEDYEHSELLLYQNQILI-E 197 (700)
T ss_pred HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCHHHHHHHHHHHHHHHHHH-H
Confidence 9999999999999999999999999999999999999999999988888773 222 332 223333333332 2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHH-HHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013398 245 PDLAEEGATFASRALECLGDGCDQMESTA-NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL 323 (444)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a-~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l 323 (444)
.|..++|.+...+--... ....+ ....+..+ .+.++.++|+..|+..+ ..+|+|..-+..+
T Consensus 198 ~g~~q~ale~L~~~e~~i------~Dkla~~e~ka~l~-----------~kl~~lEeA~~~y~~Ll-~rnPdn~~Yy~~l 259 (700)
T KOG1156|consen 198 AGSLQKALEHLLDNEKQI------VDKLAFEETKADLL-----------MKLGQLEEAVKVYRRLL-ERNPDNLDYYEGL 259 (700)
T ss_pred cccHHHHHHHHHhhhhHH------HHHHHHhhhHHHHH-----------HHHhhHHhHHHHHHHHH-hhCchhHHHHHHH
Confidence 344444444332111100 00000 01111122 45688999999999999 9999999877655
Q ss_pred HHHHHHcCCHHHHH-HHHH-------------------------------------------------------------
Q 013398 324 SLEYAEQRKLNAAH-YYAK------------------------------------------------------------- 341 (444)
Q Consensus 324 g~~~~~~g~~~~A~-~~~~------------------------------------------------------------- 341 (444)
=.++..-.+--+++ ..|.
T Consensus 260 ~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~l 339 (700)
T KOG1156|consen 260 EKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFL 339 (700)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHH
Confidence 44442111111111 1111
Q ss_pred -HHHh-----hcCC------------CC-hHHH--HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013398 342 -MLLK-----LEGG------------SN-LKGW--LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (444)
Q Consensus 342 -~al~-----l~P~------------~~-~~~~--~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~ 400 (444)
+.+. +++. .| .-+| +-++.-+...|+++.|..+++.|++-.| ..++.+...|.++..
T Consensus 340 e~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP--TliEly~~KaRI~kH 417 (700)
T KOG1156|consen 340 EKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP--TLIELYLVKARIFKH 417 (700)
T ss_pred HHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc--hHHHHHHHHHHHHHh
Confidence 1000 1111 00 1233 3456667788999999999999999999 899999999999999
Q ss_pred hCCHHHHHHHHHHHHHHHH
Q 013398 401 QGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 401 ~g~~~~A~~~~~~al~l~~ 419 (444)
.|.+++|...+.++.++..
T Consensus 418 ~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 418 AGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cCChHHHHHHHHHHHhccc
Confidence 9999999999999987765
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.49 E-value=3.7e-11 Score=122.51 Aligned_cols=269 Identities=14% Similarity=-0.002 Sum_probs=193.2
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC-
Q 013398 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG- 209 (444)
Q Consensus 131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g- 209 (444)
++...|++++|+..|.. .....++...++...|.++...|++++|...|+..|..+|++...+..|..++....
T Consensus 13 il~e~g~~~~AL~~L~~-----~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEK-----NEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHCCCHHHHHHHHHh-----hhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence 45567899999998732 334557788899999999999999999999999999999999999999988884433
Q ss_pred ----CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHcCC--------------------
Q 013398 210 ----EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEE-GATFASRALECLGD-------------------- 264 (444)
Q Consensus 210 ----~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~e-A~~~~~~al~~~~~-------------------- 264 (444)
..+.-...|++.- ...|....+...-... ..+..+.+ +..+.+..+..--|
T Consensus 88 ~~~~~~~~~~~~y~~l~--~~yp~s~~~~rl~L~~--~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELA--EKYPRSDAPRRLPLDF--LEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccHHHHHHHHHHHH--HhCccccchhHhhccc--CCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 4566678888877 6677643332111000 01111111 11112222211100
Q ss_pred ------------------------CcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013398 265 ------------------------GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (444)
Q Consensus 265 ------------------------~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~ 320 (444)
.++.....++++++..|. ..|++++|++.+++++ ...|+.++.+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd-----------~~g~~~~Al~~Id~aI-~htPt~~ely 231 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD-----------YLGDYEKALEYIDKAI-EHTPTLVELY 231 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH-----------HhCCHHHHHHHHHHHH-hcCCCcHHHH
Confidence 001111233455555553 4578999999999999 9999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc--CCCCc----HHHHHH-
Q 013398 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT--GKWEQ----GELLRT- 393 (444)
Q Consensus 321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~--P~~~~----~~~~~~- 393 (444)
+..|.++-..|++.+|.+.++.|..+|+.|- -.-...+..+.+.|+.++|...+......+ |. .+ -.+||.
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR-yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~-~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELDLADR-YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL-SNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCChhhH-HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc-cCHHHHHHHHHHH
Confidence 9999999999999999999999999999972 455556777888999999999998877554 31 11 125554
Q ss_pred -HHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 394 -KAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 394 -la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
-|.++.++|++..|+..|..+.++..+-.
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~ 339 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVLKHFDDFE 339 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 48899999999999999999988766543
No 95
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.45 E-value=2.3e-12 Score=108.89 Aligned_cols=118 Identities=18% Similarity=0.084 Sum_probs=100.9
Q ss_pred HHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013398 254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL 333 (444)
Q Consensus 254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~ 333 (444)
.++++++. +|+. ..+.+.+|.++... +++++|+..|++++ ..+|+++.+++++|.++..+|++
T Consensus 5 ~~~~~l~~-~p~~----~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~~-~~~p~~~~~~~~la~~~~~~~~~ 67 (135)
T TIGR02552 5 TLKDLLGL-DSEQ----LEQIYALAYNLYQQ-----------GRYDEALKLFQLLA-AYDPYNSRYWLGLAACCQMLKEY 67 (135)
T ss_pred hHHHHHcC-Chhh----HHHHHHHHHHHHHc-----------ccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHH
Confidence 45666663 3321 34556666666543 57899999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013398 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (444)
Q Consensus 334 ~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 391 (444)
++|+..++++++++|+++ ..++.+|.++...|++++|+..++++++..| ++....
T Consensus 68 ~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~ 122 (135)
T TIGR02552 68 EEAIDAYALAAALDPDDP-RPYFHAAECLLALGEPESALKALDLAIEICG--ENPEYS 122 (135)
T ss_pred HHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--ccchHH
Confidence 999999999999999994 9999999999999999999999999999999 665544
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.45 E-value=4.9e-11 Score=121.58 Aligned_cols=248 Identities=15% Similarity=0.098 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013398 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (444)
Q Consensus 161 ~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (444)
.++......++...|++++|++.++..-..-++...+.-..|.++..+|++++|...|+..| ..+|+|..-+..+...
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li--~rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI--DRNPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHH
Confidence 44555667788999999999999999999999999999999999999999999999999999 8999998766544433
Q ss_pred Hhc----CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhh-------hhhhhhh--hhchH----------HHHhh
Q 013398 241 CGE----YPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS-------LSAQSKV--AITDF----------DRATR 297 (444)
Q Consensus 241 ~~~----~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~-------~~~~~~~--~~~~~----------~~~~~ 297 (444)
... ..+..+.-...|+...+..|....+....-.+.-|.- |...... .++.+ .+..-
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 211 1234667788888877766543211000000001111 1111000 01100 11111
Q ss_pred HHHHHHHHHHHHHhh------------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 013398 298 QAKALQALVSAARST------------NMRDLS--ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363 (444)
Q Consensus 298 ~~eA~~~~~~al~~~------------~P~~~~--a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~ 363 (444)
..+-+..|...+ +. +|.... +++.++..|...|++++|++++++|++..|.. .+.++..|.|+.
T Consensus 162 i~~l~~~~~~~l-~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSL-ESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-VELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhh-cccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHH
Confidence 122222333332 22 122222 34889999999999999999999999999998 599999999999
Q ss_pred HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013398 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (444)
Q Consensus 364 ~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 414 (444)
..|++++|..+++.|-.+++ .+--+..--+..+.+.|++++|...+..-
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~--~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDL--ADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HCCCHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 99999999999999999999 77666666788889999999999877543
No 97
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.45 E-value=2.9e-11 Score=120.77 Aligned_cols=258 Identities=15% Similarity=0.028 Sum_probs=186.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHH
Q 013398 137 NIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALN 216 (444)
Q Consensus 137 ~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~ 216 (444)
+|...+.. .+.+++..|+.++..-..|..+...|+.++|....+.++..++.+.--|.-+|.++....+|++|++
T Consensus 22 QYkkgLK~-----~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 22 QYKKGLKL-----IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHhHHHH-----HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 44455544 3678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHh
Q 013398 217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296 (444)
Q Consensus 217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 296 (444)
+|+.|+ ..+|+|.+.+.-++-+ ..+.++++.....-.+.++..|.. -.-|+-.++++.- .|
T Consensus 97 cy~nAl--~~~~dN~qilrDlslL-Q~QmRd~~~~~~tr~~LLql~~~~-----ra~w~~~Avs~~L-----------~g 157 (700)
T KOG1156|consen 97 CYRNAL--KIEKDNLQILRDLSLL-QIQMRDYEGYLETRNQLLQLRPSQ-----RASWIGFAVAQHL-----------LG 157 (700)
T ss_pred HHHHHH--hcCCCcHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHhhhhh-----HHHHHHHHHHHHH-----------HH
Confidence 999999 9999999988755443 334567777677777777754432 1234445544433 24
Q ss_pred hHHHHHHHHHHHHHhhC---CCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCH
Q 013398 297 RQAKALQALVSAARSTN---MRDL-----SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY 368 (444)
Q Consensus 297 ~~~eA~~~~~~al~~~~---P~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~ 368 (444)
.+..|....+.-. +.. |+.- +.......++.+.|.+++|++...+--.---|. .......|.+++++|++
T Consensus 158 ~y~~A~~il~ef~-~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk-la~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 158 EYKMALEILEEFE-KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK-LAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHH-HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH-HHHhhhHHHHHHHHhhH
Confidence 5677766665555 333 3332 234555667788899888887775542222222 24556779999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013398 369 EDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (444)
Q Consensus 369 ~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 425 (444)
++|+..|...+..+| ||...+..+-.++- .+....+..+.+.++...+....
T Consensus 236 EeA~~~y~~Ll~rnP--dn~~Yy~~l~~~lg---k~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 236 EEAVKVYRRLLERNP--DNLDYYEGLEKALG---KIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HhHHHHHHHHHhhCc--hhHHHHHHHHHHHH---HHhhhHHHHHHHHHHHhhcCccc
Confidence 999999999999999 88877766655543 44444444444444444444333
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.44 E-value=8.7e-12 Score=129.29 Aligned_cols=228 Identities=15% Similarity=0.050 Sum_probs=191.5
Q ss_pred hcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHH
Q 013398 173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGA 252 (444)
Q Consensus 173 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~ 252 (444)
..++...|...|=++++++|....+|-.||..|..--+...|.++|++|. .+||.+..+.-..+..+ ......++|.
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAF--eLDatdaeaaaa~adty-ae~~~we~a~ 546 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAF--ELDATDAEAAAASADTY-AEESTWEEAF 546 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCchhhhhHHHHHHHh-hccccHHHHH
Confidence 34568899999999999999999999999999999999999999999999 99999999887777765 4467888888
Q ss_pred HHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 013398 253 TFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK 332 (444)
Q Consensus 253 ~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~ 332 (444)
...-++-+..+. ......|..+|..|... +++-.|+..|+.++ +.+|.|...|..||.+|.+.|+
T Consensus 547 ~I~l~~~qka~a---~~~k~nW~~rG~yyLea-----------~n~h~aV~~fQsAL-R~dPkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 547 EICLRAAQKAPA---FACKENWVQRGPYYLEA-----------HNLHGAVCEFQSAL-RTDPKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred HHHHHHhhhchH---HHHHhhhhhccccccCc-----------cchhhHHHHHHHHh-cCCchhHHHHHHHHHHHHhcCc
Confidence 886666554321 22345677788887654 56789999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-----CcHHHHHHHHHHHHHhCCHHHH
Q 013398 333 LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-----EQGELLRTKAKVQLVQGQLKGA 407 (444)
Q Consensus 333 ~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-----~~~~~~~~la~~~~~~g~~~~A 407 (444)
+..|++.|.||..++|++ .-+.+-.+.+....|+|++|+..+...+....++ +-.+.+...+..+.-+|=...|
T Consensus 612 y~~AlKvF~kAs~LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~ka 690 (1238)
T KOG1127|consen 612 YSHALKVFTKASLLRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKA 690 (1238)
T ss_pred eehHHHhhhhhHhcCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999998 6899999999999999999999999988765421 3456667777777777877788
Q ss_pred HHHHHHHHHHHH
Q 013398 408 VETYTHLLAALQ 419 (444)
Q Consensus 408 ~~~~~~al~l~~ 419 (444)
...+++.++...
T Consensus 691 vd~~eksie~f~ 702 (1238)
T KOG1127|consen 691 VDFFEKSIESFI 702 (1238)
T ss_pred hHHHHHHHHHHH
Confidence 888888776543
No 99
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=7.3e-11 Score=105.80 Aligned_cols=182 Identities=16% Similarity=0.034 Sum_probs=154.7
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHH
Q 013398 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235 (444)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~ 235 (444)
..|+--.+|.....+....|+.+-|..++.+....-|++...--..|..+...|++++|++.|+..+ .-||.|..++-
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL--~ddpt~~v~~K 124 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLL--EDDPTDTVIRK 124 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHh--ccCcchhHHHH
Confidence 3455566888899999999999999999999887779999999999999999999999999999999 89999988876
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC
Q 013398 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (444)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~ 315 (444)
....+. ...|+.-+||.....-++.++.+ ..+|..++.+|... +++++|.-+|++.+ -+.|.
T Consensus 125 RKlAil-ka~GK~l~aIk~ln~YL~~F~~D-----~EAW~eLaeiY~~~-----------~~f~kA~fClEE~l-l~~P~ 186 (289)
T KOG3060|consen 125 RKLAIL-KAQGKNLEAIKELNEYLDKFMND-----QEAWHELAEIYLSE-----------GDFEKAAFCLEELL-LIQPF 186 (289)
T ss_pred HHHHHH-HHcCCcHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhH-----------hHHHHHHHHHHHHH-HcCCC
Confidence 554443 44567779999999999988766 46899999998765 56899999999999 99999
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013398 316 DLSILYRLSLEYAEQR---KLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (444)
Q Consensus 316 ~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (444)
++..+..+|.+++.+| +++-|.++|.++++++|.+ ..+|+.+
T Consensus 187 n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~-~ral~GI 231 (289)
T KOG3060|consen 187 NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN-LRALFGI 231 (289)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh-HHHHHHH
Confidence 9999999999888776 6667999999999999976 4777654
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.41 E-value=1.6e-10 Score=128.27 Aligned_cols=326 Identities=14% Similarity=-0.012 Sum_probs=197.7
Q ss_pred HHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcC
Q 013398 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC 93 (444)
Q Consensus 14 ~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~ 93 (444)
...+.++...|++++|...+..+.+..+.......+ . ....+...++.++...|++++|...+++++...
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~-------~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 482 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDG-------T---LQAEFNALRAQVAINDGDPEEAERLAELALAEL 482 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccch-------h---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 455667778899999998888776553211000000 0 112333456788899999999999999999851
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHH
Q 013398 94 WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEW--DPSILDHLSFAF 171 (444)
Q Consensus 94 ~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~--~~~~~~~lg~~l 171 (444)
+..++.........++. .+...|++++|...+..+... .-...+. ...++..+|.++
T Consensus 483 ~~~~~~~~~~a~~~lg~--------------------~~~~~G~~~~A~~~~~~al~~-~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 483 PLTWYYSRIVATSVLGE--------------------VHHCKGELARALAMMQQTEQM-ARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred CCccHHHHHHHHHHHHH--------------------HHHHcCCHHHHHHHHHHHHHH-HhhhcchHHHHHHHHHHHHHH
Confidence 11111000000111221 233467888888776433211 1111111 123556788888
Q ss_pred HhcCCHHHHHHHHHhhcCCCC--------CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC-----ChHHHHHHH
Q 013398 172 SIAGDLSSLATQIEELLPGII--------NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK-----CLPALLIAS 238 (444)
Q Consensus 172 ~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~-----~~~a~~~~~ 238 (444)
...|++++|...+++++.+.. .....+..+|.++...|++++|...+++++ ..... ...++..++
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL--EVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH--HhhhccCchHHHHHHHHHH
Confidence 899999999999988877521 122345677888888999999999999988 44221 223334445
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH
Q 013398 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (444)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~ 318 (444)
.+. ...|+.++|...+.++......... ..........+.. ......|+.+.|...+.... ...+....
T Consensus 620 ~~~-~~~G~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~~g~~~~A~~~l~~~~-~~~~~~~~ 688 (903)
T PRK04841 620 KIS-LARGDLDNARRYLNRLENLLGNGRY--HSDWIANADKVRL-------IYWQMTGDKEAAANWLRQAP-KPEFANNH 688 (903)
T ss_pred HHH-HHcCCHHHHHHHHHHHHHHHhcccc--cHhHhhHHHHHHH-------HHHHHCCCHHHHHHHHHhcC-CCCCccch
Confidence 554 3468888888888888885433211 0000000000000 00123567777777777666 54333322
Q ss_pred H----HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 319 I----LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-----NLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 319 a----~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-----~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
. +..+|.++...|++++|+..+++++...... ...++..+|.++..+|++++|...+.+|+++..
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 2 4578888888888999999888888763221 124677888888888999999999999988876
No 101
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=2.2e-12 Score=118.53 Aligned_cols=103 Identities=17% Similarity=0.082 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013398 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~ 398 (444)
-+-.-|.-+++.++|.+|+..|.+||+++|.++ ..|.+.+.+|.++|.|+.|++.++.||.++| ....+|..+|.++
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA-VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--~yskay~RLG~A~ 159 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA-VYYCNRAAAYSKLGEYEDAVKDCESALSIDP--HYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--HHHHHHHHHHHHH
Confidence 344567888899999999999999999999995 9999999999999999999999999999999 8999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013398 399 LVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 399 ~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
..+|++++|++.|+++|+|.|++...
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHH
Confidence 99999999999999999999988753
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.38 E-value=3e-11 Score=128.50 Aligned_cols=232 Identities=15% Similarity=0.131 Sum_probs=171.5
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH---------------
Q 013398 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK--------------- 195 (444)
Q Consensus 131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~--------------- 195 (444)
.+...+++++|+..+ +..+..+|+...+|+.+|.++...+++..+... .++..-+.+.
T Consensus 40 ~~~~~~~~deai~i~-----~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~ 112 (906)
T PRK14720 40 AYKSENLTDEAKDIC-----EEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLY 112 (906)
T ss_pred HHHhcCCHHHHHHHH-----HHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhh
Confidence 455678999999875 456788999999999999999999998888766 7777766666
Q ss_pred ----HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013398 196 ----ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (444)
Q Consensus 196 ----~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (444)
.+++.||.+|..+|++++|...|+++| +.+|+|+.++.+.|..+-.. +.++|+.++.+|+...-
T Consensus 113 ~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L--~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~~i-------- 180 (906)
T PRK14720 113 GENKLALRTLAEAYAKLNENKKLKGVWERLV--KADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYRFI-------- 180 (906)
T ss_pred hhhhHHHHHHHHHHHHcCChHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHH--------
Confidence 999999999999999999999999999 99999999999888776544 89999999999998421
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH--------H------------HHHHHcC
Q 013398 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL--------S------------LEYAEQR 331 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l--------g------------~~~~~~g 331 (444)
..+++.++.+...+.+ ..+|++.+.++.+ | ..|...+
T Consensus 181 ----------------------~~kq~~~~~e~W~k~~-~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 181 ----------------------KKKQYVGIEEIWSKLV-HYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred ----------------------hhhcchHHHHHHHHHH-hcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Confidence 1246788999999999 9999998875432 3 3445556
Q ss_pred CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013398 332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY 411 (444)
Q Consensus 332 ~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~ 411 (444)
++++++..++.+|+++|++. .+...++.+|. +.|.+ ...++..++... +-.....+..++..|
T Consensus 238 ~~~~~i~iLK~iL~~~~~n~-~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~-------------l~~~~~~~~~~i~~f 300 (906)
T PRK14720 238 DWDEVIYILKKILEHDNKNN-KAREELIRFYK--EKYKD-HSLLEDYLKMSD-------------IGNNRKPVKDCIADF 300 (906)
T ss_pred hhhHHHHHHHHHHhcCCcch-hhHHHHHHHHH--HHccC-cchHHHHHHHhc-------------cccCCccHHHHHHHH
Confidence 67777777777777777763 66666666665 44443 333333333321 111223456666666
Q ss_pred HHHHHHHHhh
Q 013398 412 THLLAALQVQ 421 (444)
Q Consensus 412 ~~al~l~~~~ 421 (444)
++-+.+.++.
T Consensus 301 ek~i~f~~G~ 310 (906)
T PRK14720 301 EKNIVFDTGN 310 (906)
T ss_pred HHHeeecCCC
Confidence 6666555543
No 103
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.34 E-value=3.4e-11 Score=101.99 Aligned_cols=98 Identities=13% Similarity=0.016 Sum_probs=89.6
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013398 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 351 (444)
...+.+|..+.. .|++++|...|+-++ .+||.++..|++||.++..+|++++|+..|.+|+.++|+++
T Consensus 36 ~~lY~~A~~ly~-----------~G~l~~A~~~f~~L~-~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 36 NTLYRYAMQLME-----------VKEFAGAARLFQLLT-IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HHHHHHHHHHHH-----------CCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 345555655544 468999999999999 99999999999999999999999999999999999999997
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013398 352 LKGWLLMARILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 352 ~~~~~~la~~l~~~g~~~eA~~~~~~al~~~ 382 (444)
.++.++|.+++..|+.+.|++.|+.|+...
T Consensus 104 -~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 104 -QAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999876
No 104
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.34 E-value=6e-11 Score=112.73 Aligned_cols=233 Identities=13% Similarity=-0.026 Sum_probs=159.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCCC------CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHH
Q 013398 165 DHLSFAFSIAGDLSSLATQIEELLPGII------NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (444)
Q Consensus 165 ~~lg~~l~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~ 238 (444)
-+||+++...|.|++|+.+..+-|.+.- ....++|+||.+|...|+-.. ...|....+...-
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g-----------~~~pee~g~f~~e- 166 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG-----------LEAPEEKGAFNAE- 166 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC-----------CCChhhcccccHH-
Confidence 4678888888888888887777765532 245789999999999996543 2344333222110
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC-
Q 013398 239 KICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD- 316 (444)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~- 316 (444)
+ ...++.|+++|..-|+..... +..--.+++-+||..|+-. |+++.||..-+.-+ .+....
T Consensus 167 -v----~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL-----------Gdf~~ai~~H~~RL-~ia~efG 229 (639)
T KOG1130|consen 167 -V----TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLL-----------GDFDQAIHFHKLRL-EIAQEFG 229 (639)
T ss_pred -H----HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeee-----------ccHHHHHHHHHHHH-HHHHHhh
Confidence 0 123445666666655543211 1111245677788777665 45666666555444 433221
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC---
Q 013398 317 -----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG----GS-NLKGWLLMARILSAQKRYEDAETILNAALDQTG--- 383 (444)
Q Consensus 317 -----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~-~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P--- 383 (444)
-.++-|||.++.-.|+++.|+++|++++.+-- .- .+..-+.||..|.-..++++|+.+..+=+.+..
T Consensus 230 DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 230 DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999876532 11 024567799999999999999999988775542
Q ss_pred -CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhcc
Q 013398 384 -KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (444)
Q Consensus 384 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 426 (444)
......++|.+|..+..+|..+.|+...+..+++.....+++|
T Consensus 310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sg 353 (639)
T KOG1130|consen 310 DRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSG 353 (639)
T ss_pred HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcch
Confidence 1134678899999999999999999999999999888777765
No 105
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=3.1e-08 Score=96.06 Aligned_cols=262 Identities=11% Similarity=0.017 Sum_probs=196.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHH---------HHHHHHHH-HH
Q 013398 137 NIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKE---------RYHILALC-YY 206 (444)
Q Consensus 137 ~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~-l~ 206 (444)
-++.+|..-...-++..++.+|.|.++|...-......|+.+.-.+.|++|+.--|.-.+ .|.+++.- -+
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 355555433222346677899999999999999999999999999999999998887543 34444432 24
Q ss_pred HCCCchHHHHHHHHhhcCCCCCC----ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhh
Q 013398 207 GAGEDLVALNLLRTLLSGSEDPK----CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLS 282 (444)
Q Consensus 207 ~~g~~~~A~~~~~~al~~~~~P~----~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 282 (444)
...+.+.+.++|+.|| ++-|. ....+++.+....++ .+...|...+-.+|-..|.+. .-.+|.-+..
T Consensus 378 e~ed~ertr~vyq~~l--~lIPHkkFtFaKiWlmyA~feIRq-~~l~~ARkiLG~AIG~cPK~K---lFk~YIelEl--- 448 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACL--DLIPHKKFTFAKIWLMYAQFEIRQ-LNLTGARKILGNAIGKCPKDK---LFKGYIELEL--- 448 (677)
T ss_pred HhhhHHHHHHHHHHHH--hhcCcccchHHHHHHHHHHHHHHH-cccHHHHHHHHHHhccCCchh---HHHHHHHHHH---
Confidence 5789999999999999 88886 344566555555443 467788888888888766542 1233333332
Q ss_pred hhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-ChHHHHHHHHH
Q 013398 283 AQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-NLKGWLLMARI 361 (444)
Q Consensus 283 ~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~la~~ 361 (444)
+.+++|.....|++-+ +-.|.|-.+|...|-.-..+|+.+.|...|.-|+.-..-+ |...|-..-..
T Consensus 449 -----------qL~efDRcRkLYEkfl-e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdF 516 (677)
T KOG1915|consen 449 -----------QLREFDRCRKLYEKFL-EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDF 516 (677)
T ss_pred -----------HHhhHHHHHHHHHHHH-hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhh
Confidence 3467899999999999 9999999999999999999999999999999998855443 22345555566
Q ss_pred HHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH-----HhC-----------CHHHHHHHHHHHHHHHHhhh
Q 013398 362 LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL-----VQG-----------QLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 362 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~-----~~g-----------~~~~A~~~~~~al~l~~~~~ 422 (444)
-...|.++.|.+.|++.|+..+ +..+|...|.... +.| ....|...|++|.....+..
T Consensus 517 Ei~~~E~ekaR~LYerlL~rt~---h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~ 590 (677)
T KOG1915|consen 517 EIEEGEFEKARALYERLLDRTQ---HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKEST 590 (677)
T ss_pred hhhcchHHHHHHHHHHHHHhcc---cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcC
Confidence 6778999999999999999988 5567877777665 455 56678888888876665443
No 106
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.33 E-value=2e-11 Score=120.32 Aligned_cols=103 Identities=11% Similarity=0.061 Sum_probs=97.4
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013398 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~ 374 (444)
.+++++|+..|++++ +++|+++.+++++|.++..+|++++|+..+++++.++|++ ..+|+.+|.++..+|+|++|+..
T Consensus 15 ~~~~~~Ai~~~~~Al-~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 15 DDDFALAVDLYTQAI-DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred cCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHhCCHHHHHHH
Confidence 468999999999999 9999999999999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013398 375 LNAALDQTGKWEQGELLRTKAKVQLVQ 401 (444)
Q Consensus 375 ~~~al~~~P~~~~~~~~~~la~~~~~~ 401 (444)
|++++.++| ++..+...++.+...+
T Consensus 93 ~~~al~l~P--~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 93 LEKGASLAP--GDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 999999999 8888888888776655
No 107
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=1.2e-08 Score=97.27 Aligned_cols=267 Identities=14% Similarity=-0.015 Sum_probs=193.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHCCCc
Q 013398 134 PRNNIEEAILLLMILLRKVALKRIEWDPS-ILDHLSFAFSIAGDLSSLATQIEELLPGIIN-RKERYHILALCYYGAGED 211 (444)
Q Consensus 134 ~~~~~~eAi~~l~~~~~~~~l~~~p~~~~-~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~g~~ 211 (444)
..|+|.+|..++. + . +...+.|. .|..-+.+-.+.|+++.|-.++.++-+..++ ........+.++...|++
T Consensus 96 ~eG~~~qAEkl~~----r-n-ae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 96 FEGDFQQAEKLLR----R-N-AEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred hcCcHHHHHHHHH----H-h-hhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 4789999988752 2 1 22334444 4444467888899999999999999998444 456777889999999999
Q ss_pred hHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc---hhhhHHHHHh-----------
Q 013398 212 LVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCD---QMESTANCLL----------- 277 (444)
Q Consensus 212 ~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~---~~~~~a~~~l----------- 277 (444)
+.|..-..+++ ...|.++.+......++ ...|.+.+......+.-+.---+++ .+...++..+
T Consensus 170 ~aA~~~v~~ll--~~~pr~~~vlrLa~r~y-~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 170 PAARENVDQLL--EMTPRHPEVLRLALRAY-IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred hhHHHHHHHHH--HhCcCChHHHHHHHHHH-HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999 89999999987666654 5578887777776655442111111 1111222210
Q ss_pred h--hhhhhhhhhhh----------chHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013398 278 G--ISLSAQSKVAI----------TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (444)
Q Consensus 278 g--~~~~~~~~~~~----------~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 345 (444)
| ..+..+-+... ....+.|.+++|.+..+.++ +..-|.- ..-.++ ..+-++.+.=++..++.++
T Consensus 247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChh-HHHHHh--hcCCCCchHHHHHHHHHHH
Confidence 0 01111100000 01245788999999999999 5544433 222222 2345888999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013398 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (444)
Q Consensus 346 l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 417 (444)
..|++| ..+..||..+.+.+.+.+|..+++.|++..| +..-+..+|.++.++|+..+|.+.+++++.+
T Consensus 323 ~h~~~p-~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~---s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 323 QHPEDP-LLLSTLGRLALKNKLWGKASEALEAALKLRP---SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hCCCCh-hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999997 9999999999999999999999999999999 5566888999999999999999999999943
No 108
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.30 E-value=4.8e-10 Score=109.34 Aligned_cols=137 Identities=21% Similarity=0.147 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013398 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (444)
Q Consensus 192 p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (444)
|....++|..+..++..|++++|++.++..+ +..|+|+..+-..+.++.. .|+.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~--~~~P~N~~~~~~~~~i~~~-~nk~----------------------- 356 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLI--AAQPDNPYYLELAGDILLE-ANKA----------------------- 356 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHH--HhCCCCHHHHHHHHHHHHH-cCCh-----------------------
Confidence 8899999999999999999999999999999 8999999877666666543 3444
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013398 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 351 (444)
.+|++.+++++ .++|+.+-.+.++|.+|.+.|++.+|+..+++.+.-+|+++
T Consensus 357 ---------------------------~~A~e~~~kal-~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp 408 (484)
T COG4783 357 ---------------------------KEAIERLKKAL-ALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP 408 (484)
T ss_pred ---------------------------HHHHHHHHHHH-hcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence 45555555555 55555555555555555555555555555555555555553
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 352 LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 352 ~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
..|..||..+..+|+-.+|...+........
T Consensus 409 -~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 409 -NGWDLLAQAYAELGNRAEALLARAEGYALAG 439 (484)
T ss_pred -hHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence 5555555555555555555544444444433
No 109
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.30 E-value=1.7e-11 Score=116.31 Aligned_cols=256 Identities=14% Similarity=0.036 Sum_probs=187.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHHCCCchHHHHHHHH------hhcCCCCCCChHHHHH
Q 013398 167 LSFAFSIAGDLSSLATQIEELLPGIINRK----ERYHILALCYYGAGEDLVALNLLRT------LLSGSEDPKCLPALLI 236 (444)
Q Consensus 167 lg~~l~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~l~~~g~~~~A~~~~~~------al~~~~~P~~~~a~~~ 236 (444)
=|.-+++.|+....+..|+.|++..-++. .+|.+||.+|.-+++|++|++.-.. .+ .-.-....+.-+
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKssgN 100 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhcccccccc
Confidence 35668889999999999999998876664 4677889999999999999876433 22 111112222333
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhhhhhhhhhhhh--ch-------HHHHhhHHHHHHHHH
Q 013398 237 ASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAI--TD-------FDRATRQAKALQALV 306 (444)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~--~~-------~~~~~~~~eA~~~~~ 306 (444)
+|.+ +..+|.+++|+.+..+-|.+... .+....++|++++|.+|...|+.-. .. .+-...++.|.+.|.
T Consensus 101 LGNt-lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 101 LGNT-LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred ccch-hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 4555 35678999999999888775322 2334568999999999998876432 11 122345667777777
Q ss_pred HHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHH
Q 013398 307 SAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 307 ~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
.-+ ++-.+. ..++-+||..|+-.|+++.|+..-+.-+.+..++. -.++.++|.++.-+|+++.|+++|
T Consensus 180 eNL-~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 180 ENL-ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHH-HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 666 554332 23567999999999999999999998888776531 257889999999999999999999
Q ss_pred HHHHhhc----CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhcc
Q 013398 376 NAALDQT----GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (444)
Q Consensus 376 ~~al~~~----P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 426 (444)
.+++.+. .+..-+...|.+|+.+.-..+++.|+.++.+=|.|.+.-.+-+|
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9887543 21123566789999999999999999999999999988776555
No 110
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=3.4e-08 Score=98.21 Aligned_cols=348 Identities=14% Similarity=0.082 Sum_probs=199.5
Q ss_pred HHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcC
Q 013398 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC 93 (444)
Q Consensus 14 ~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~ 93 (444)
|.|+.|++++++.++|...+. .++. .+ ...+++-+.++.+.|++++|...|+..++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~~~--------~~-------------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GLDR--------LD-------------DKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-cccc--------cc-------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 567777777777777766655 1111 01 1356677778888999999999999988761
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 013398 94 WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEW-DPSILDHLSFAFS 172 (444)
Q Consensus 94 ~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~-~~~~~~~lg~~l~ 172 (444)
.++....+..++-.. ... -++- + .+ .....|+ +.+.+++.+-++.
T Consensus 141 ---~dd~d~~~r~nl~a~---~a~---------------------l~~~-~-----~q-~v~~v~e~syel~yN~Ac~~i 186 (652)
T KOG2376|consen 141 ---SDDQDEERRANLLAV---AAA---------------------LQVQ-L-----LQ-SVPEVPEDSYELLYNTACILI 186 (652)
T ss_pred ---CchHHHHHHHHHHHH---HHh---------------------hhHH-H-----HH-hccCCCcchHHHHHHHHHHHH
Confidence 212111111111100 000 0000 0 01 1122343 5568889999999
Q ss_pred hcCCHHHHHHHHHhhcCC--------CCCC-------HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHH--
Q 013398 173 IAGDLSSLATQIEELLPG--------IINR-------KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL-- 235 (444)
Q Consensus 173 ~~g~~~~A~~~~~~al~~--------~p~~-------~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~-- 235 (444)
..|+|.+|++.+++++++ +-+. .....+|+.++..+|+.++|...|...+ +.+|.+.....
T Consensus 187 ~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i--~~~~~D~~~~Av~ 264 (652)
T KOG2376|consen 187 ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII--KRNPADEPSLAVA 264 (652)
T ss_pred hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HhcCCCchHHHHH
Confidence 999999999999999322 2111 2356778999999999999999999999 77876653221
Q ss_pred -HHHHHHhcCCCCHH-HHHHHHHHHHHHcCCCcch-----hhhHHHHHhhhhhhh-----hhhhhh------c-----h-
Q 013398 236 -IASKICGEYPDLAE-EGATFASRALECLGDGCDQ-----MESTANCLLGISLSA-----QSKVAI------T-----D- 291 (444)
Q Consensus 236 -~~~~~~~~~~~~~~-eA~~~~~~al~~~~~~~~~-----~~~~a~~~lg~~~~~-----~~~~~~------~-----~- 291 (444)
+.....-...+-++ .++..++.....++.-... -....+.+.+..... +.+... . +
T Consensus 265 ~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ 344 (652)
T KOG2376|consen 265 VNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPI 344 (652)
T ss_pred hcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHH
Confidence 11111111111111 1111111111101000000 001112222221111 111000 0 0
Q ss_pred ------HHHHhhHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhhcCCCChHHHH
Q 013398 292 ------FDRATRQAKALQALVSAARSTNMRD-LSILYRLSLEYAEQRKLNAAHYYAK--------MLLKLEGGSNLKGWL 356 (444)
Q Consensus 292 ------~~~~~~~~eA~~~~~~al~~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~--------~al~l~P~~~~~~~~ 356 (444)
..+...+.+|++.+.... +.+|.+ ..+.+.++.....+|+++.|++.+. ...+..-. | ..-.
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~-~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~-P-~~V~ 421 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFA-DGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL-P-GTVG 421 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC-h-hHHH
Confidence 012236789999999999 999999 6788889999999999999999999 44443322 2 2222
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH-------hhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013398 357 LMARILSAQKRYEDAETILNAAL-------DQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 357 ~la~~l~~~g~~~eA~~~~~~al-------~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
.+-..+..-+.-+-|.+.+.+|+ .-.+ .-...+.-.+....+.|+.++|...+++++...|...++
T Consensus 422 aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~--~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~ 494 (652)
T KOG2376|consen 422 AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI--ALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDL 494 (652)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHHhcccch--HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHH
Confidence 33334444555444555555555 3333 445566777888888899999999999999988776654
No 111
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.27 E-value=6.7e-11 Score=97.17 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHH
Q 013398 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRT 393 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-~~~~~~~~ 393 (444)
+++++.+|..+.++|++++|++.|++++..+|+++ ..+++.+|.++...|++++|+..|++++...|+. ....+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 56789999999999999999999999999998762 2688889999999999999999999999988821 12678899
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhcc
Q 013398 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (444)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 426 (444)
+|.++..+|++++|+..|+++++..|+...+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999887665443
No 112
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.9e-11 Score=109.49 Aligned_cols=130 Identities=19% Similarity=0.128 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc---CHHHHHHH
Q 013398 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK---RYEDAETI 374 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g---~~~eA~~~ 374 (444)
.++-+.-++..+ +.||+|++-|..||.+|..+|+++.|...|.+|+++.|+++ +.+..+|.+++.+. ...++...
T Consensus 138 ~~~l~a~Le~~L-~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~-~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHL-QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP-EILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCcccHHHHHH
Confidence 567788899999 99999999999999999999999999999999999999995 99999999998774 46689999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh-hccCccch
Q 013398 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK-TFSSDKRF 431 (444)
Q Consensus 375 ~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~-~~~~~~~~ 431 (444)
+++++.++| ++..+.+.+|..+.++|++.+|...|+..++..|-+.. .+.++.-+
T Consensus 216 l~~al~~D~--~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~i 271 (287)
T COG4235 216 LRQALALDP--ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSI 271 (287)
T ss_pred HHHHHhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 999999999 99999999999999999999999999999998876655 44444444
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.26 E-value=1.3e-10 Score=117.76 Aligned_cols=195 Identities=15% Similarity=0.056 Sum_probs=166.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 013398 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~ 239 (444)
-+..|......|...|+..+|.....+-++ .|+++-.|..||.+....-=|++|....+..- ..|....+.
T Consensus 423 rlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~s--------arA~r~~~~ 493 (777)
T KOG1128|consen 423 RLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYIS--------ARAQRSLAL 493 (777)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhh--------HHHHHhhcc
Confidence 355677888899999999999999999999 78888889889888888777777777766644 224444444
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHH
Q 013398 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI 319 (444)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a 319 (444)
..+. .++++++..++++.+++.|- ....|+.+|.+..+. ++...|.++|..++ .++|++.++
T Consensus 494 ~~~~-~~~fs~~~~hle~sl~~npl-----q~~~wf~~G~~ALql-----------ek~q~av~aF~rcv-tL~Pd~~ea 555 (777)
T KOG1128|consen 494 LILS-NKDFSEADKHLERSLEINPL-----QLGTWFGLGCAALQL-----------EKEQAAVKAFHRCV-TLEPDNAEA 555 (777)
T ss_pred cccc-chhHHHHHHHHHHHhhcCcc-----chhHHHhccHHHHHH-----------hhhHHHHHHHHHHh-hcCCCchhh
Confidence 4343 57899999999999996443 357899999998764 56899999999999 999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013398 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 320 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~ 382 (444)
|+|++.+|.+.|+-.+|-..+++|++-+-++ +..|.|.-.+..+.|.+++|+.+|.+.+...
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-CeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999777 6999999999999999999999999998764
No 114
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=1.1e-09 Score=98.33 Aligned_cols=184 Identities=15% Similarity=0.031 Sum_probs=148.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcch
Q 013398 189 PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQ 268 (444)
Q Consensus 189 ~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~ 268 (444)
.+.|+....+-+...+.+..|+.+-|..++++.- ...|+...+--+.| +.+.-.|.+++|+++|+..++..|.+.-
T Consensus 46 ~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~--~~fp~S~RV~~lka-m~lEa~~~~~~A~e~y~~lL~ddpt~~v- 121 (289)
T KOG3060|consen 46 ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLR--DRFPGSKRVGKLKA-MLLEATGNYKEAIEYYESLLEDDPTDTV- 121 (289)
T ss_pred ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HhCCCChhHHHHHH-HHHHHhhchhhHHHHHHHHhccCcchhH-
Confidence 4556777778888999999999999999999988 66699887665443 4467789999999999999995443321
Q ss_pred hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013398 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (444)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 348 (444)
.+----.+.. ..|+.-+||+.+..-+ +.-|.|+++|..|+.+|...|++++|.-++++.+=++|
T Consensus 122 ----~~KRKlAilk-----------a~GK~l~aIk~ln~YL-~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 122 ----IRKRKLAILK-----------AQGKNLEAIKELNEYL-DKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred ----HHHHHHHHHH-----------HcCCcHHHHHHHHHHH-HHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 1111111111 1355669999999999 99999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013398 349 GSNLKGWLLMARILSAQK---RYEDAETILNAALDQTGKWEQGELLRTKA 395 (444)
Q Consensus 349 ~~~~~~~~~la~~l~~~g---~~~eA~~~~~~al~~~P~~~~~~~~~~la 395 (444)
-++ ..+..+|.+++-+| ++.-|.++|.++++++| .+..+++.+.
T Consensus 186 ~n~-l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~--~~~ral~GI~ 232 (289)
T KOG3060|consen 186 FNP-LYFQRLAEVLYTQGGAENLELARKYYERALKLNP--KNLRALFGIY 232 (289)
T ss_pred CcH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh--HhHHHHHHHH
Confidence 996 88899999988886 56779999999999999 7877776543
No 115
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=6.8e-09 Score=97.27 Aligned_cols=325 Identities=17% Similarity=0.097 Sum_probs=208.9
Q ss_pred HHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcC
Q 013398 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC 93 (444)
Q Consensus 14 ~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~ 93 (444)
...|-|++.+|+|++|...|..+-+. ++.|. + ..-.++-+++-.|.+.+|...-.++-+.
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~~------e-------l~vnLAcc~FyLg~Y~eA~~~~~ka~k~- 120 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNK------DDAPA------E-------LGVNLACCKFYLGQYIEAKSIAEKAPKT- 120 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhcc------CCCCc------c-------cchhHHHHHHHHHHHHHHHHHHhhCCCC-
Confidence 45788999999999999999876642 11121 1 2234456777889999999888877554
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 013398 94 WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSI 173 (444)
Q Consensus 94 ~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~ 173 (444)
| .-.++...++.- .++ ++-+..+...+.+ ..+-...|+.++..
T Consensus 121 ----p-L~~RLlfhlahk-----------------------lnd-Ek~~~~fh~~LqD--------~~EdqLSLAsvhYm 163 (557)
T KOG3785|consen 121 ----P-LCIRLLFHLAHK-----------------------LND-EKRILTFHSSLQD--------TLEDQLSLASVHYM 163 (557)
T ss_pred ----h-HHHHHHHHHHHH-----------------------hCc-HHHHHHHHHHHhh--------hHHHHHhHHHHHHH
Confidence 1 111222222211 111 1222222111111 11223456667777
Q ss_pred cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcC-CCCHHHHH
Q 013398 174 AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY-PDLAEEGA 252 (444)
Q Consensus 174 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~-~~~~~eA~ 252 (444)
.-.|++|++.|.+++.-+|+....-..+|.+|+++.=|+-+..++.--+ +..|+.+-+..+.+...++. .|+..++.
T Consensus 164 R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL--~q~pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL--RQFPDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH--HhCCCcHHHHHHHHHHHhhhhccchhHHH
Confidence 7789999999999999999999999999999999999999999999999 88999998887766554432 23322221
Q ss_pred ----------------HHH----------HHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHH
Q 013398 253 ----------------TFA----------SRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (444)
Q Consensus 253 ----------------~~~----------~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~ 306 (444)
... +.+++.+|+-- .....|..+|.+-|.. +++..+|+...+
T Consensus 242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~-~~IPEARlNL~iYyL~-----------q~dVqeA~~L~K 309 (557)
T KOG3785|consen 242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM-KHIPEARLNLIIYYLN-----------QNDVQEAISLCK 309 (557)
T ss_pred HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH-hhChHhhhhheeeecc-----------cccHHHHHHHHh
Confidence 111 11222222210 0112344444444433 466788888877
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013398 307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML---LKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAA 378 (444)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a---l~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~a 378 (444)
.++|..|.-+.--|.+.+..|+-....+..+-| +.+-..+. ..+...++.+++-..+|++-+.++...
T Consensus 310 ----dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 310 ----DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred ----hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999888765544444433 33333221 244566777777788888888877776
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013398 379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (444)
Q Consensus 379 l~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 415 (444)
-.-+- ++-...+++|.+....|.+.+|.+.+-++-
T Consensus 386 ~sYF~--NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 386 ESYFT--NDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHhc--CcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 66666 455667788888888888888888776654
No 116
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=2.2e-07 Score=90.32 Aligned_cols=368 Identities=11% Similarity=-0.019 Sum_probs=189.9
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHH
Q 013398 3 IHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRET 82 (444)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA 82 (444)
||.=|+.+..|-.=|.-=+.++.+.-|...++++|+.. ..+.. .+..-+..-++.....-|
T Consensus 66 irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd--------~r~it-----------LWlkYae~Emknk~vNhA 126 (677)
T KOG1915|consen 66 IRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVD--------YRNIT-----------LWLKYAEFEMKNKQVNHA 126 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--------cccch-----------HHHHHHHHHHhhhhHhHH
Confidence 56667888888877877778888888888888888652 11111 112222333445555555
Q ss_pred HHHHHHHhCcCCCCChHHHHHHHHHHH--HHHhhhcCCC-----------CCCcccc-ccCccccCCCcHHHHHHHHHHH
Q 013398 83 IMSYRRALLPCWNLDAETTAKLQKEFA--IFLLYCGGET-----------CPPNLRS-QMGSSFVPRNNIEEAILLLMIL 148 (444)
Q Consensus 83 ~~~y~~aL~~~~~~~~~~~~~l~~~~a--~~ll~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~eAi~~l~~~ 148 (444)
-.++++|+++ =|...+.+ .+.. +-.+ +.... .|+.... .....=...+.++.|...+
T Consensus 127 RNv~dRAvt~----lPRVdqlW-yKY~ymEE~L-gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IY--- 197 (677)
T KOG1915|consen 127 RNVWDRAVTI----LPRVDQLW-YKYIYMEEML-GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIY--- 197 (677)
T ss_pred HHHHHHHHHh----cchHHHHH-HHHHHHHHHh-cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHH---
Confidence 5555555554 22221111 0000 0000 00000 0111000 0000001123455555443
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHCCCchHHHHHHHHhhcC-
Q 013398 149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHILALCYYGAGEDLVALNLLRTLLSG- 224 (444)
Q Consensus 149 ~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~l~~~g~~~~A~~~~~~al~~- 224 (444)
+...--+| +...|...+..-.+.|+...|...|++|+..-.++. ......|..-..+..++.|..+|+-||.+
T Consensus 198 --erfV~~HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 198 --ERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred --HHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333445 566788888888889999999999999987644432 23334455555666777777777777721
Q ss_pred -----------------------------------------CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 013398 225 -----------------------------------------SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLG 263 (444)
Q Consensus 225 -----------------------------------------~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~ 263 (444)
+-+|-|.++++....+ ....|+.+.-...|++||...|
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL-~e~~g~~~~Ire~yErAIanvp 353 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRL-EESVGDKDRIRETYERAIANVP 353 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHH-HHhcCCHHHHHHHHHHHHccCC
Confidence 3344444444433332 2345777788888889988777
Q ss_pred CCcchhhhHHHHHhhh--hhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 013398 264 DGCDQMESTANCLLGI--SLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD----LSILYRLSLEYAEQRKLNAAH 337 (444)
Q Consensus 264 ~~~~~~~~~a~~~lg~--~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~----~~a~~~lg~~~~~~g~~~~A~ 337 (444)
|..+.....-|.+|=+ ++... ....+.+.+.++|+.++ .+-|+. +.+|...|....++.++..|.
T Consensus 354 p~~ekr~W~RYIYLWinYalyeE--------le~ed~ertr~vyq~~l-~lIPHkkFtFaKiWlmyA~feIRq~~l~~AR 424 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEE--------LEAEDVERTRQVYQACL-DLIPHKKFTFAKIWLMYAQFEIRQLNLTGAR 424 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH--------HHhhhHHHHHHHHHHHH-hhcCcccchHHHHHHHHHHHHHHHcccHHHH
Confidence 7544322222333322 22111 11345667777777777 777754 334444455555555555555
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013398 338 YYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (444)
Q Consensus 338 ~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 415 (444)
+.+-.|+-..|.+ ..+-..-.+-..+++++.....|++-|+-.| .+-.+|...|.+...+|+.+.|...|+-|+
T Consensus 425 kiLG~AIG~cPK~--KlFk~YIelElqL~efDRcRkLYEkfle~~P--e~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 425 KILGNAIGKCPKD--KLFKGYIELELQLREFDRCRKLYEKFLEFSP--ENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HHHHHHhccCCch--hHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh--HhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 5555555555543 3333333333444455555555555555555 444445555555555555554444444444
No 117
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=4.3e-08 Score=93.53 Aligned_cols=294 Identities=16% Similarity=0.047 Sum_probs=190.8
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhC
Q 013398 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~ 91 (444)
...+.|+.-...|+|.+|++...+.-+..|+ | .-++...+....+.|+.+.|=.+..++-+
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~------p-------------~l~~l~aA~AA~qrgd~~~an~yL~eaae 146 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ------P-------------VLAYLLAAEAAQQRGDEDRANRYLAEAAE 146 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc------h-------------HHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 3445666666678888888876653322111 1 12444555667788888888888888888
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013398 92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF 171 (444)
Q Consensus 92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l 171 (444)
.++ ++... .....+.. ...++++..|...+ +..+...|.++.+......+|
T Consensus 147 ~~~--~~~l~--v~ltrarl--------------------ll~~~d~~aA~~~v-----~~ll~~~pr~~~vlrLa~r~y 197 (400)
T COG3071 147 LAG--DDTLA--VELTRARL--------------------LLNRRDYPAARENV-----DQLLEMTPRHPEVLRLALRAY 197 (400)
T ss_pred cCC--CchHH--HHHHHHHH--------------------HHhCCCchhHHHHH-----HHHHHhCcCChHHHHHHHHHH
Confidence 721 21111 11122222 22355666666543 456778899999988888999
Q ss_pred HhcCCHHHHHHHHHhhcCCCCCCHHH---HHHHHH--HHHHCCCchHHHH---HHH---HhhcCCCCCCChHHHHHHHHH
Q 013398 172 SIAGDLSSLATQIEELLPGIINRKER---YHILAL--CYYGAGEDLVALN---LLR---TLLSGSEDPKCLPALLIASKI 240 (444)
Q Consensus 172 ~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~--~l~~~g~~~~A~~---~~~---~al~~~~~P~~~~a~~~~~~~ 240 (444)
...|++.+....+.+.-+..--+.+- +-+-+. ++.+.++-+.+.. +.+ +.+ +-+|. ..... ..
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~---l~~~~-a~ 271 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPE---LVVAY-AE 271 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh--hcChh---HHHHH-HH
Confidence 99999988887776665543222221 111111 1222222222222 111 122 22332 22211 22
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013398 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (444)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~ 320 (444)
.+...|..++|.+..+.+++..-+. ......+.. +.++...=++..++.+ +.+|++|..+
T Consensus 272 ~li~l~~~~~A~~~i~~~Lk~~~D~------~L~~~~~~l-------------~~~d~~~l~k~~e~~l-~~h~~~p~L~ 331 (400)
T COG3071 272 RLIRLGDHDEAQEIIEDALKRQWDP------RLCRLIPRL-------------RPGDPEPLIKAAEKWL-KQHPEDPLLL 331 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHhccCh------hHHHHHhhc-------------CCCCchHHHHHHHHHH-HhCCCChhHH
Confidence 3456789999999999998853211 111222221 2345677888999999 9999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013398 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (444)
Q Consensus 321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~ 381 (444)
..||..+.+.+.+.+|..+|+.|++..|+. ..|..+|.++.++|+..+|-+..+.++..
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRPSA--SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999983 88999999999999999999999999854
No 118
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.23 E-value=9.9e-11 Score=115.35 Aligned_cols=102 Identities=10% Similarity=-0.020 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013398 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL 399 (444)
Q Consensus 320 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~ 399 (444)
+...|..+...|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+..+++++.++| ++..+++++|.++.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~ 81 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHH
Confidence 5567888899999999999999999999999 59999999999999999999999999999999 89999999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHhhhhh
Q 013398 400 VQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 400 ~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
.+|++++|+..|++++++.|++...
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999998876654
No 119
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.23 E-value=4.4e-11 Score=88.57 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhcC
Q 013398 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK-RYEDAETILNAALDQTG 383 (444)
Q Consensus 315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g-~~~eA~~~~~~al~~~P 383 (444)
+++.+|+.+|.++...|++++|+..|+++++++|++ ..+|+++|.++..+| ++++|+..++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 367788888888888888888888888888888888 588888888888888 68888888888888887
No 120
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.22 E-value=3.2e-10 Score=108.16 Aligned_cols=254 Identities=15% Similarity=0.036 Sum_probs=174.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH
Q 013398 135 RNNIEEAILLLMILLRKVALKRIE-WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (444)
Q Consensus 135 ~~~~~eAi~~l~~~~~~~~l~~~p-~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~ 213 (444)
.|+|..++... + +...+| ........+.+++..+|+++..+..... .++....+...++..+...++.+.
T Consensus 14 ~G~Y~~~i~e~-----~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 14 LGNYQQCINEA-----S-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp TT-HHHHCHHH-----H-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred hhhHHHHHHHh-----h-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHH
Confidence 57788887532 1 112222 2334566788899999999887765543 224455666777877776677888
Q ss_pred HHHHHHHhhcCCCCC-CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchH
Q 013398 214 ALNLLRTLLSGSEDP-KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF 292 (444)
Q Consensus 214 A~~~~~~al~~~~~P-~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~ 292 (444)
++..++..+. ...+ .++.... .+...+...|++++|+..+.+. .+ ..+....-.++..
T Consensus 85 ~l~~l~~~~~-~~~~~~~~~~~~-~~A~i~~~~~~~~~AL~~l~~~-----~~-----lE~~al~Vqi~L~--------- 143 (290)
T PF04733_consen 85 ALEELKELLA-DQAGESNEIVQL-LAATILFHEGDYEEALKLLHKG-----GS-----LELLALAVQILLK--------- 143 (290)
T ss_dssp HHHHHHHCCC-TS---CHHHHHH-HHHHHHCCCCHHHHHHCCCTTT-----TC-----HHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHH-hccccccHHHHH-HHHHHHHHcCCHHHHHHHHHcc-----Cc-----ccHHHHHHHHHHH---------
Confidence 8888888773 2222 3433333 4444556688888888776543 11 1233333334433
Q ss_pred HHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH
Q 013398 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (444)
Q Consensus 293 ~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e 370 (444)
.++.+.|.+.++..- +.+.|+.-+....+|+....| ++.+|...|+......|.. ...++.++.++..+|+|++
T Consensus 144 --~~R~dlA~k~l~~~~-~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t-~~~lng~A~~~l~~~~~~e 219 (290)
T PF04733_consen 144 --MNRPDLAEKELKNMQ-QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST-PKLLNGLAVCHLQLGHYEE 219 (290)
T ss_dssp --TT-HHHHHHHHHHHH-CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S-HHHHHHHHHHHHHCT-HHH
T ss_pred --cCCHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhCCHHH
Confidence 467899999999999 999888877777888887776 6999999999987776676 4889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHhhhhh
Q 013398 371 AETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKG-AVETYTHLLAALQVQTKT 424 (444)
Q Consensus 371 A~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~l~~~~~~~ 424 (444)
|...+.+|+..+| .++..+.++..+...+|+..+ +.+...++....|+|.=+
T Consensus 220 Ae~~L~~al~~~~--~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 220 AEELLEEALEKDP--NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHCCC-C--CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHhcc--CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999 899999999999999999944 555666666677766543
No 121
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=2.3e-09 Score=106.36 Aligned_cols=220 Identities=17% Similarity=0.094 Sum_probs=160.3
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Q 013398 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (444)
Q Consensus 131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~ 210 (444)
.+...++|++|+... ..++...|+++++....-.++...++|++|+..-+.-....-.+. ..|..|-|++++++
T Consensus 21 ~~~~~~e~e~a~k~~-----~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTA-----NKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNK 94 (652)
T ss_pred HhccchHHHHHHHHH-----HHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHccc
Confidence 455678999998863 667888999999999999999999999999854443332222221 12688999999999
Q ss_pred chHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc
Q 013398 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT 290 (444)
Q Consensus 211 ~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~ 290 (444)
.++|+..++ .+ ++.+..+....+.++|+ .+++++|.+.|+..++-..++.+ ..-..++-.+
T Consensus 95 ~Dealk~~~-~~----~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd~d---~~~r~nl~a~---------- 155 (652)
T KOG2376|consen 95 LDEALKTLK-GL----DRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDDQD---EERRANLLAV---------- 155 (652)
T ss_pred HHHHHHHHh-cc----cccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCchHH---HHHHHHHHHH----------
Confidence 999999999 33 55555566667888876 68999999999999883222211 1111111100
Q ss_pred hHHHHhhHHHHHHH-HHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCC---------hHH
Q 013398 291 DFDRATRQAKALQA-LVSAARSTNMR-DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-----GGSN---------LKG 354 (444)
Q Consensus 291 ~~~~~~~~~eA~~~-~~~al~~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~~---------~~~ 354 (444)
..+... ..+.+ ...|. +.+.+||.+.++...|+|.+|++.+++|+++. -++. ..+
T Consensus 156 --------~a~l~~~~~q~v-~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 156 --------AAALQVQLLQSV-PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred --------HHhhhHHHHHhc-cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 111111 45555 56666 67899999999999999999999999994322 1110 246
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013398 355 WLLMARILSAQKRYEDAETILNAALDQTGK 384 (444)
Q Consensus 355 ~~~la~~l~~~g~~~eA~~~~~~al~~~P~ 384 (444)
...|+-++..+|+.+||.+.|...+..+|.
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 778999999999999999999999998883
No 122
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.21 E-value=8.5e-09 Score=114.55 Aligned_cols=289 Identities=12% Similarity=-0.074 Sum_probs=178.7
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013398 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (444)
Q Consensus 10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (444)
.+.....|.++...|++++|...++++++.. +... ......+...+|.++...|++++|...++++
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------~~~~------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~a 517 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAEL--------PLTW------YYSRIVATSVLGEVHHCKGELARALAMMQQT 517 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CCcc------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455568889999999999999999988642 1110 0011235567888899999999999999999
Q ss_pred hCcCCCC-ChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhh-C---CCCHHHH
Q 013398 90 LLPCWNL-DAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKR-I---EWDPSIL 164 (444)
Q Consensus 90 L~~~~~~-~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~-~---p~~~~~~ 164 (444)
+...... ++.........++. ++..+|++++|...+..+..- .-.. . |....++
T Consensus 518 l~~~~~~g~~~~~~~~~~~la~--------------------~~~~~G~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~ 576 (903)
T PRK04841 518 EQMARQHDVYHYALWSLLQQSE--------------------ILFAQGFLQAAYETQEKAFQL-IEEQHLEQLPMHEFLL 576 (903)
T ss_pred HHHHhhhcchHHHHHHHHHHHH--------------------HHHHCCCHHHHHHHHHHHHHH-HHHhccccccHHHHHH
Confidence 9761111 11111111122222 344578899999887544221 1111 1 1123346
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCCC-----CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh---HHHHH
Q 013398 165 DHLSFAFSIAGDLSSLATQIEELLPGII-----NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL---PALLI 236 (444)
Q Consensus 165 ~~lg~~l~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~---~a~~~ 236 (444)
..+|.++...|++++|...+++++.... ....++..+|.++...|++++|...+.+++ .+.+... .....
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~--~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE--NLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHhcccccHhHhhH
Confidence 6789999999999999999999987532 235667779999999999999999999998 5433321 11000
Q ss_pred HH--HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh
Q 013398 237 AS--KICGEYPDLAEEGATFASRALECLGDGCDQME---STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (444)
Q Consensus 237 ~~--~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~ 311 (444)
.. ........ .......+.+........... ...+..++.++ ...|++++|+..+++++ .
T Consensus 655 ~~~~~~~~~~~~---g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~-----------~~~g~~~~A~~~l~~al-~ 719 (903)
T PRK04841 655 ADKVRLIYWQMT---GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ-----------ILLGQFDEAEIILEELN-E 719 (903)
T ss_pred HHHHHHHHHHHC---CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-H
Confidence 00 00000000 011111222221111100000 00012222222 35788999999999999 7
Q ss_pred hC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013398 312 TN------MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 312 ~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
.. +....++..+|.++...|+.++|...+.+|+++....
T Consensus 720 ~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 720 NARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 52 2234578899999999999999999999999998764
No 123
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.20 E-value=3.5e-10 Score=107.85 Aligned_cols=257 Identities=13% Similarity=0.037 Sum_probs=162.7
Q ss_pred HHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHH
Q 013398 73 WKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKV 152 (444)
Q Consensus 73 ~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~ 152 (444)
++-.|++..++..++ .... ++..... ...++. ..++.+|+++..+..+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~----~~~~~~e-----~~~~~~---------------Rs~iAlg~~~~vl~ei------- 58 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSF----SPENKLE-----RDFYQY---------------RSYIALGQYDSVLSEI------- 58 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTS----TCHHHHH-----HHHHHH---------------HHHHHTT-HHHHHHHS-------
T ss_pred HHHhhhHHHHHHHhh-ccCC----CchhHHH-----HHHHHH---------------HHHHHcCChhHHHHHh-------
Confidence 466899999998887 2222 3332111 111111 1234456666554321
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013398 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIIN--RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (444)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~ 230 (444)
....+....+...++..+...++.+.++..++..+.-... ++-...--|.++...|++++|++.+.+. ++
T Consensus 59 -~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~ 130 (290)
T PF04733_consen 59 -KKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GS 130 (290)
T ss_dssp --TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TC
T ss_pred -ccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------Cc
Confidence 1222333445566666666656777888888776654433 4444555578888889888888766543 34
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc-chhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHH
Q 013398 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGC-DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (444)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al 309 (444)
.+.......+++. .+|++.|.+.++++-+. .++. ....+.+|..+.. | .+.+.+|.-.|++..
T Consensus 131 lE~~al~Vqi~L~-~~R~dlA~k~l~~~~~~-~eD~~l~qLa~awv~l~~-----g---------~e~~~~A~y~f~El~ 194 (290)
T PF04733_consen 131 LELLALAVQILLK-MNRPDLAEKELKNMQQI-DEDSILTQLAEAWVNLAT-----G---------GEKYQDAFYIFEELS 194 (290)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHH-----T---------TTCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH-cCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHh-----C---------chhHHHHHHHHHHHH
Confidence 5555544555544 68999998888887663 3321 1112233333222 1 134789999999988
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCH-HHHHHHHHHHHhhcCCCCcH
Q 013398 310 RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY-EDAETILNAALDQTGKWEQG 388 (444)
Q Consensus 310 ~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~-~eA~~~~~~al~~~P~~~~~ 388 (444)
...|.++..++.++.++..+|++++|...+++++..+|+++ .++.++..+...+|+. +.+..++.+....+| +++
T Consensus 195 -~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~-d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p--~h~ 270 (290)
T PF04733_consen 195 -DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP-DTLANLIVCSLHLGKPTEAAERYLSQLKQSNP--NHP 270 (290)
T ss_dssp -CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH-HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT--TSH
T ss_pred -hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC--CCh
Confidence 88889999999999999999999999999999999999995 9999999999999998 556678888888899 665
Q ss_pred H
Q 013398 389 E 389 (444)
Q Consensus 389 ~ 389 (444)
.
T Consensus 271 ~ 271 (290)
T PF04733_consen 271 L 271 (290)
T ss_dssp H
T ss_pred H
Confidence 4
No 124
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.6e-10 Score=105.67 Aligned_cols=124 Identities=22% Similarity=0.146 Sum_probs=108.0
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHH
Q 013398 176 DLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFA 255 (444)
Q Consensus 176 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~ 255 (444)
..+..+.-++.-++.+|++.+-|..||.+|+.+|++..|...|.+|+ ++.|++++.+...+.+.+.+.|.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~--rL~g~n~~~~~g~aeaL~~~a~~-------- 206 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNAL--RLAGDNPEILLGLAEALYYQAGQ-------- 206 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhcCC--------
Confidence 35677778899999999999999999999999999999999999999 99999999887666554432211
Q ss_pred HHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 013398 256 SRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA 335 (444)
Q Consensus 256 ~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~ 335 (444)
....++...|++++ .+||+|..+++.||..+.++|++.+
T Consensus 207 ----------------------------------------~~ta~a~~ll~~al-~~D~~~iral~lLA~~afe~g~~~~ 245 (287)
T COG4235 207 ----------------------------------------QMTAKARALLRQAL-ALDPANIRALSLLAFAAFEQGDYAE 245 (287)
T ss_pred ----------------------------------------cccHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHcccHHH
Confidence 12367889999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCC
Q 013398 336 AHYYAKMLLKLEGGS 350 (444)
Q Consensus 336 A~~~~~~al~l~P~~ 350 (444)
|+...++.+++.|.+
T Consensus 246 A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 246 AAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999999999876
No 125
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.20 E-value=3.6e-10 Score=99.40 Aligned_cols=119 Identities=13% Similarity=0.007 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHH
Q 013398 298 QAKALQALVSAARSTNMRD--LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAET 373 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~ 373 (444)
+..+...+.+.+ +.++.+ ...++++|.++..+|++++|+..|++++.+.|++. ..+|.++|.++...|++++|+.
T Consensus 15 ~~~~~~~l~~~~-~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 15 FTIVADILLRIL-PTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred cccchhhhhHhc-cCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 455666666666 666666 56779999999999999999999999999987742 2589999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHHHHH
Q 013398 374 ILNAALDQTGKWEQGELLRTKAKVQL-------VQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 374 ~~~~al~~~P~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~l~~ 419 (444)
.+++++...| ++...+.++|.++. .+|++++|+..|++++.++.
T Consensus 94 ~~~~Al~~~~--~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 94 YYFQALERNP--FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHHHhCc--CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 9999999999 88898999999998 88888866666666655544
No 126
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.19 E-value=8.3e-10 Score=97.53 Aligned_cols=112 Identities=21% Similarity=0.178 Sum_probs=73.8
Q ss_pred HHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHH
Q 013398 259 LECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNA 335 (444)
Q Consensus 259 l~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~ 335 (444)
....+.+.....+.+++.+|..+... |++++|+..|++++ .++|+. +.+++++|.++...|++++
T Consensus 23 ~~~~~~~~~~~~a~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~la~~~~~~g~~~~ 90 (172)
T PRK02603 23 LKILPINKKAKEAFVYYRDGMSAQAD-----------GEYAEALENYEEAL-KLEEDPNDRSYILYNMGIIYASNGEHDK 90 (172)
T ss_pred HHHcccccHhhhHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHhhccchHHHHHHHHHHHHHHcCCHHH
Confidence 33333333334455667777766543 56777777777777 776653 3577777777777777777
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHccC--------------HHHHHHHHHHHHhhcC
Q 013398 336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKR--------------YEDAETILNAALDQTG 383 (444)
Q Consensus 336 A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~--------------~~eA~~~~~~al~~~P 383 (444)
|+..+++++.++|++ ..++..+|.++..+|+ +++|+.++++++..+|
T Consensus 91 A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 91 ALEYYHQALELNPKQ-PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 777777777777777 4777777777777766 4555555555555555
No 127
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.19 E-value=5.4e-10 Score=98.72 Aligned_cols=107 Identities=18% Similarity=0.146 Sum_probs=92.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013398 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (444)
Q Consensus 314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 391 (444)
|..+.+++++|..+...|++++|+.+|++++++.|+.+ ..++.++|.++...|++++|+.++++++...| ++...+
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~ 109 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--KQPSAL 109 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHH
Confidence 45566789999999999999999999999999988742 36899999999999999999999999999999 889999
Q ss_pred HHHHHHHHHhCC--------------HHHHHHHHHHHHHHHHhhh
Q 013398 392 RTKAKVQLVQGQ--------------LKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 392 ~~la~~~~~~g~--------------~~~A~~~~~~al~l~~~~~ 422 (444)
..+|.++...|+ +++|++.+++++.+.|++.
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 999999999887 4667777777777666654
No 128
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.18 E-value=2e-10 Score=88.69 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013398 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~ 398 (444)
+++++|.++...|++++|+..++++++..|++ ..++..+|.++...|++++|+.++++++...| .+..+++.+|.++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-ADAYYNLAAAYYKLGKYEEALEDYEKALELDP--DNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cchhHHHHHHHHH
Confidence 57788888888888888888888888888887 48888888888888888888888888888888 6777888888888
Q ss_pred HHhCCHHHHHHHHHHHHHHHH
Q 013398 399 LVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 399 ~~~g~~~~A~~~~~~al~l~~ 419 (444)
...|++++|...+++++++.|
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCC
Confidence 888888888888888877654
No 129
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.17 E-value=6.1e-10 Score=91.37 Aligned_cols=106 Identities=18% Similarity=0.069 Sum_probs=92.7
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013398 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 348 (444)
..++.+|..+.. .+++++|++.|++++ ..+|++ +.+++.+|.++...|++++|+..|++++..+|
T Consensus 3 ~~~~~~~~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLK-----------AGDYADAIQAFQAFL-KKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHH-----------cCCHHHHHHHHHHHH-HHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 356667776654 467999999999999 999987 57999999999999999999999999999999
Q ss_pred CCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013398 349 GSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (444)
Q Consensus 349 ~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 391 (444)
+++ ..++..+|.++..+|++++|+.+++++++..| ++..+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~ 113 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP--GSSAAK 113 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc--CChhHH
Confidence 852 27899999999999999999999999999999 665543
No 130
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.15 E-value=6.7e-10 Score=113.98 Aligned_cols=139 Identities=13% Similarity=0.014 Sum_probs=115.9
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 013398 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ--------RKLNAAHYYAKM 342 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~--------g~~~~A~~~~~~ 342 (444)
+...+..|..+..... .+.+.+|+.+|++|+ ++||+++.++-.++.++... .+...+....++
T Consensus 339 Ay~~~lrg~~~~~~~~--------~~~~~~A~~lle~Ai-~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 339 ALTLFYQAHHYLNSGD--------AKSLNKASDLLEEIL-KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3445556655543321 245789999999999 99999999999998887654 245677888888
Q ss_pred HHhh--cCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013398 343 LLKL--EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 343 al~l--~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
++.+ +|.++ .++..+|.+....|++++|...+++|++++| + ..+|..+|.++...|++++|++.|++|+.+.|.
T Consensus 410 a~al~~~~~~~-~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLP-RIYEILAVQALVKGKTDEAYQAINKAIDLEM--S-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 7775 77775 8899999999999999999999999999999 4 789999999999999999999999999999997
Q ss_pred hh
Q 013398 421 QT 422 (444)
Q Consensus 421 ~~ 422 (444)
.+
T Consensus 486 ~p 487 (517)
T PRK10153 486 EN 487 (517)
T ss_pred Cc
Confidence 54
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.14 E-value=1.5e-09 Score=105.98 Aligned_cols=122 Identities=20% Similarity=0.022 Sum_probs=115.0
Q ss_pred HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013398 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~ 373 (444)
+.+.+++|...++..+ ...|+|+-.+-..|.++.+.++..+|.+.+++++.++|+.+ ..+.++|..|.+.|++++|+.
T Consensus 318 ~~~~~d~A~~~l~~L~-~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~-~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLI-AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP-LLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHhcCChHHHHH
Confidence 3577899999999999 99999999999999999999999999999999999999995 999999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013398 374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 374 ~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
.+++.+..+| +++..|..+|..+..+|+..+|...+.+...+.=
T Consensus 396 ~L~~~~~~~p--~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 396 ILNRYLFNDP--EDPNGWDLLAQAYAELGNRAEALLARAEGYALAG 439 (484)
T ss_pred HHHHHhhcCC--CCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence 9999999999 9999999999999999999999999888776543
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.14 E-value=2.5e-09 Score=91.67 Aligned_cols=116 Identities=22% Similarity=0.147 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHH
Q 013398 296 TRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYED 370 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~e 370 (444)
++...+...+++.+ .-.|++ ..+.+.+|.++...|++++|+..|++++...|+.. ..+++.+|.++..+|+|++
T Consensus 25 ~~~~~~~~~~~~l~-~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 25 GDPAKAEAAAEQLA-KDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCHHHHHHHHHHHH-HHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45677788899999 999999 56778899999999999999999999999887752 1478889999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013398 371 AETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (444)
Q Consensus 371 A~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 415 (444)
|+..++.. ...+ -.+.++..+|.++...|++++|...|+++|
T Consensus 104 Al~~L~~~-~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATLQQI-PDEA--FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHhc-cCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999763 3333 467888999999999999999999999875
No 133
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.14 E-value=6.6e-10 Score=85.76 Aligned_cols=98 Identities=19% Similarity=0.152 Sum_probs=89.8
Q ss_pred HHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh
Q 013398 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352 (444)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 352 (444)
+++.+|.++.. .+++++|+..+++++ +..|+++.+++.+|.++...|++++|+..+++++.+.|.+.
T Consensus 2 ~~~~~a~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 68 (100)
T cd00189 2 ALLNLGNLYYK-----------LGDYDEALEYYEKAL-ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA- 68 (100)
T ss_pred HHHHHHHHHHH-----------HhcHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-
Confidence 35666666654 367899999999999 99999999999999999999999999999999999999985
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 353 KGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
.++..+|.++...|++++|...+.++++..|
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 8999999999999999999999999999887
No 134
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.13 E-value=5.8e-11 Score=87.90 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC-CchHHHHHHHHhhcCCCCC
Q 013398 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDP 228 (444)
Q Consensus 159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g-~~~~A~~~~~~al~~~~~P 228 (444)
+++.+|..+|.++...|++++|+..|+++++++|+++.+|+++|.++..+| ++++|+..+++++ +++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al--~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL--KLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH--HHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH--HcCc
Confidence 367889999999999999999999999999999999999999999999999 7999999999999 7887
No 135
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.13 E-value=1.9e-09 Score=94.80 Aligned_cols=101 Identities=22% Similarity=0.117 Sum_probs=86.3
Q ss_pred hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013398 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (444)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 346 (444)
...+++.+|.++... +++++|+..|++++ .+.|++ +.+++++|.++...|++++|+..|++++++
T Consensus 34 ~a~~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 34 EAFTYYRDGMSAQSE-----------GEYAEALQNYYEAM-RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356788888888654 67999999999999 998774 458999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHH-------HccCHH-------HHHHHHHHHHhhcC
Q 013398 347 EGGSNLKGWLLMARILS-------AQKRYE-------DAETILNAALDQTG 383 (444)
Q Consensus 347 ~P~~~~~~~~~la~~l~-------~~g~~~-------eA~~~~~~al~~~P 383 (444)
+|+. ...+.++|.++. .+|+++ +|+.+|++++..+|
T Consensus 102 ~~~~-~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 102 NPFL-PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred CcCc-HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9998 499999999999 777766 56666667778888
No 136
>PRK11906 transcriptional regulator; Provisional
Probab=99.13 E-value=2.3e-09 Score=105.21 Aligned_cols=156 Identities=15% Similarity=0.104 Sum_probs=119.4
Q ss_pred CHHHHHHHHHHHH---HHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013398 247 LAEEGATFASRAL---ECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL 323 (444)
Q Consensus 247 ~~~eA~~~~~~al---~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l 323 (444)
..+.|+..|.+++ ++. |. .+.+|..++.|+....-.... .......+|.+..++|+ ++||+|+.++..+
T Consensus 273 ~~~~Al~lf~ra~~~~~ld-p~----~a~a~~~lA~~h~~~~~~g~~--~~~~~~~~a~~~A~rAv-eld~~Da~a~~~~ 344 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQ-TL----KTECYCLLAECHMSLALHGKS--ELELAAQKALELLDYVS-DITTVDGKILAIM 344 (458)
T ss_pred HHHHHHHHHHHHhhcccCC-cc----cHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHH-hcCCCCHHHHHHH
Confidence 3457777888888 532 22 356677777766654211111 12345689999999999 9999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH-HHHhC
Q 013398 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV-QLVQG 402 (444)
Q Consensus 324 g~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~-~~~~g 402 (444)
|.++.-.++++.|+..|++|+.++|+. +.+|...|+++.-.|+.++|+..++++++++| -...+-..+--+ ..-..
T Consensus 345 g~~~~~~~~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP--~~~~~~~~~~~~~~~~~~ 421 (458)
T PRK11906 345 GLITGLSGQAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEP--RRRKAVVIKECVDMYVPN 421 (458)
T ss_pred HHHHHhhcchhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc--hhhHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999 59999999999999999999999999999999 443333333222 33445
Q ss_pred CHHHHHHHHHH
Q 013398 403 QLKGAVETYTH 413 (444)
Q Consensus 403 ~~~~A~~~~~~ 413 (444)
..++|+..|-+
T Consensus 422 ~~~~~~~~~~~ 432 (458)
T PRK11906 422 PLKNNIKLYYK 432 (458)
T ss_pred chhhhHHHHhh
Confidence 67777777643
No 137
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.11 E-value=4.3e-09 Score=108.11 Aligned_cols=150 Identities=15% Similarity=0.063 Sum_probs=110.8
Q ss_pred hhcCCCCCCHHHHHH--HHHHHHHCCC---chHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013398 186 ELLPGIINRKERYHI--LALCYYGAGE---DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALE 260 (444)
Q Consensus 186 ~al~~~p~~~~~~~~--la~~l~~~g~---~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~ 260 (444)
++...-|.++++|-. .|.-+...++ +..|+.+|++|+ +++|++..++..++..+....+
T Consensus 328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai--~ldP~~a~a~A~la~~~~~~~~-------------- 391 (517)
T PRK10153 328 RLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL--KSEPDFTYAQAEKALADIVRHS-------------- 391 (517)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHHh--------------
Confidence 344555666666544 4666655544 678888889999 8899888777554332211000
Q ss_pred HcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 013398 261 CLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST--NMRDLSILYRLSLEYAEQRKLNAAHY 338 (444)
Q Consensus 261 ~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 338 (444)
..+.+ ..+...+.+..++++ .+ +|.++.++.-+|..+...|++++|..
T Consensus 392 -~~~~~----------------------------~~~l~~a~~~~~~a~-al~~~~~~~~~~~ala~~~~~~g~~~~A~~ 441 (517)
T PRK10153 392 -QQPLD----------------------------EKQLAALSTELDNIV-ALPELNVLPRIYEILAVQALVKGKTDEAYQ 441 (517)
T ss_pred -cCCcc----------------------------HHHHHHHHHHHHHhh-hcccCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 00000 123456667777777 64 88889999999999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 339 YAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 339 ~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
.+++|++++|+ +.+|..+|.++...|++++|+..|++|+.++|
T Consensus 442 ~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 442 AINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999994 58999999999999999999999999999999
No 138
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.08 E-value=2.3e-10 Score=83.61 Aligned_cols=64 Identities=23% Similarity=0.230 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh
Q 013398 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (444)
Q Consensus 166 ~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~ 231 (444)
.+|.++...|++++|+..|+++++.+|+++++|+.+|.++..+|++++|+..|++++ +.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~--~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL--ELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH--HHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcCCC
Confidence 578999999999999999999999999999999999999999999999999999999 8999875
No 139
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=5.8e-09 Score=95.69 Aligned_cols=257 Identities=18% Similarity=0.124 Sum_probs=180.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH
Q 013398 134 PRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (444)
Q Consensus 134 ~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~ 213 (444)
...+++.||..+ ..-.+++|.+......||-+|....+|..|.++|++.-.+.|......+..+..+++.+.+..
T Consensus 22 ~d~ry~DaI~~l-----~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 22 RDARYADAIQLL-----GSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHhhHHHHHHHH-----HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 345677787765 345678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCC-ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchH
Q 013398 214 ALNLLRTLLSGSEDPK-CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF 292 (444)
Q Consensus 214 A~~~~~~al~~~~~P~-~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~ 292 (444)
|+.+..... . +|+ .....-.-+.+.|. .+++..+ +-.++..|...+ +....+.|-...+
T Consensus 97 ALrV~~~~~--D-~~~L~~~~lqLqaAIkYs-e~Dl~g~----rsLveQlp~en~---Ad~~in~gCllyk--------- 156 (459)
T KOG4340|consen 97 ALRVAFLLL--D-NPALHSRVLQLQAAIKYS-EGDLPGS----RSLVEQLPSENE---ADGQINLGCLLYK--------- 156 (459)
T ss_pred HHHHHHHhc--C-CHHHHHHHHHHHHHHhcc-cccCcch----HHHHHhccCCCc---cchhccchheeec---------
Confidence 999988877 2 233 11122223334333 2333222 334454553221 4556667766654
Q ss_pred HHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hcCCCC-----------------
Q 013398 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK----LEGGSN----------------- 351 (444)
Q Consensus 293 ~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~----------------- 351 (444)
.|++++|++-|+.++ +...-+|-.-|+++.++++.|+++.|+++....++ -.|+..
T Consensus 157 --egqyEaAvqkFqaAl-qvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 157 --EGQYEAAVQKFQAAL-QVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred --cccHHHHHHHHHHHH-hhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 368999999999999 99999999999999999999999999988776654 345421
Q ss_pred -------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013398 352 -------LKGWLLMARILSAQKRYEDAETILNAALDQTGKW---EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 352 -------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
.++++..+.+++..|+++.|.+.+. +..|+. -++..+.+++.. ...|++-+..+-+.-++++.|=-
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt---DmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALT---DMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh---cCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence 3456677788888888887766543 333421 134445555443 23455666666666666665533
Q ss_pred h
Q 013398 422 T 422 (444)
Q Consensus 422 ~ 422 (444)
.
T Consensus 310 ~ 310 (459)
T KOG4340|consen 310 P 310 (459)
T ss_pred h
Confidence 3
No 140
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.08 E-value=4.3e-10 Score=86.77 Aligned_cols=80 Identities=25% Similarity=0.253 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013398 296 TRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~ 373 (444)
+++++|+..|++++ +.+|+ +...++.+|.++.++|++++|+..+++ ...+|.+ ..++..+|.++..+|+|++|+.
T Consensus 3 ~~y~~Ai~~~~k~~-~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLL-ELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHH-HHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHH-HHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 34556666666666 55553 344555556666666666666666666 5555555 3555555666666666666666
Q ss_pred HHHHH
Q 013398 374 ILNAA 378 (444)
Q Consensus 374 ~~~~a 378 (444)
+++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 55543
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.07 E-value=6.4e-10 Score=85.82 Aligned_cols=83 Identities=22% Similarity=0.255 Sum_probs=73.9
Q ss_pred HcCCHHHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHH
Q 013398 329 EQRKLNAAHYYAKMLLKLEGGS-NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGA 407 (444)
Q Consensus 329 ~~g~~~~A~~~~~~al~l~P~~-~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A 407 (444)
.+|++++|+..|+++++.+|.+ ....|+.+|.+++.+|+|++|+.++++ ++.+| .+...++.+|.++.++|++++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--SNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--CHHHHHHHHHHHHHHTT-HHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--CCHHHHHHHHHHHHHhCCHHHH
Confidence 3689999999999999999953 137888899999999999999999999 88888 8889999999999999999999
Q ss_pred HHHHHHH
Q 013398 408 VETYTHL 414 (444)
Q Consensus 408 ~~~~~~a 414 (444)
+..|+++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999875
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.07 E-value=5.3e-10 Score=81.67 Aligned_cols=64 Identities=27% Similarity=0.388 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc
Q 013398 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ 387 (444)
Q Consensus 321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~ 387 (444)
+.+|..+...|++++|+..|+++++.+|++ ..+|..+|.++..+|++++|+.+|+++++.+| ++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P--~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDN-PEAWYLLGRILYQQGRYDEALAYYERALELDP--DN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST--T-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CC
Confidence 457778888888888888888888888887 48888888888888888888888888888888 55
No 143
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.07 E-value=2.6e-08 Score=92.71 Aligned_cols=201 Identities=12% Similarity=-0.017 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHH---HHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHH--
Q 013398 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERY---HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA-- 233 (444)
Q Consensus 159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a-- 233 (444)
.++..++..|..+...|++++|++.|++++...|..+.+. +.+|.++++.|++++|+..|++.+ +.+|+++.+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi--~~~P~~~~~~~ 107 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI--RLNPTHPNIDY 107 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HhCcCCCchHH
Confidence 3566677888888888999999999999999888887655 888999999999999999999999 888887653
Q ss_pred -HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh
Q 013398 234 -LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST 312 (444)
Q Consensus 234 -~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~ 312 (444)
++..|.. ....++ ..+.....+ +. ... ......+|+..|++.+ ..
T Consensus 108 a~Y~~g~~-~~~~~~-----~~~~~~~~~-~~---------------~~r-----------D~~~~~~A~~~~~~li-~~ 153 (243)
T PRK10866 108 VLYMRGLT-NMALDD-----SALQGFFGV-DR---------------SDR-----------DPQHARAAFRDFSKLV-RG 153 (243)
T ss_pred HHHHHHHh-hhhcch-----hhhhhccCC-Cc---------------ccc-----------CHHHHHHHHHHHHHHH-HH
Confidence 3322221 111100 000000000 00 000 0122457888899999 88
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHH
Q 013398 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELL 391 (444)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-~~~~~~ 391 (444)
-|++.-+ .+|......+ +-.- +.--+..|..|.+.|+|.-|+.-++.+++..|+. ...+++
T Consensus 154 yP~S~ya--------------~~A~~rl~~l---~~~l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal 215 (243)
T PRK10866 154 YPNSQYT--------------TDATKRLVFL---KDRL-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDAL 215 (243)
T ss_pred CcCChhH--------------HHHHHHHHHH---HHHH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHH
Confidence 8887532 2222222221 1111 1333456778888888888888888888887731 236788
Q ss_pred HHHHHHHHHhCCHHHHHHHHHH
Q 013398 392 RTKAKVQLVQGQLKGAVETYTH 413 (444)
Q Consensus 392 ~~la~~~~~~g~~~~A~~~~~~ 413 (444)
+.++..+..+|..++|....+.
T Consensus 216 ~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 216 PLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHcCChHHHHHHHHH
Confidence 8888888888888888766543
No 144
>PRK11906 transcriptional regulator; Provisional
Probab=99.06 E-value=9.7e-09 Score=100.84 Aligned_cols=181 Identities=12% Similarity=0.041 Sum_probs=122.3
Q ss_pred hCCCCH---HHH----HHHHHHHHhcCCH---HHHHHHHHhhc---CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013398 156 RIEWDP---SIL----DHLSFAFSIAGDL---SSLATQIEELL---PGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 156 ~~p~~~---~~~----~~lg~~l~~~g~~---~~A~~~~~~al---~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
..|.+. ++| ++.|......+.. +.|...|++++ +++|+.+.+|-.++.+++.. ++
T Consensus 243 ~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~------------~~ 310 (458)
T PRK11906 243 LAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSL------------AL 310 (458)
T ss_pred CCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHH------------HH
Confidence 335555 555 4555555544433 56667777777 77777777777777665542 00
Q ss_pred cCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHH
Q 013398 223 SGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKAL 302 (444)
Q Consensus 223 ~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~ 302 (444)
- ...+ ......+|....++++++.+.+ +.++..+|.+.... ++++.|+
T Consensus 311 ~-g~~~---------------~~~~~~~a~~~A~rAveld~~D-----a~a~~~~g~~~~~~-----------~~~~~a~ 358 (458)
T PRK11906 311 H-GKSE---------------LELAAQKALELLDYVSDITTVD-----GKILAIMGLITGLS-----------GQAKVSH 358 (458)
T ss_pred h-cCCC---------------chHHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhh-----------cchhhHH
Confidence 0 0000 0122335566666666643322 45666666655433 4588999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHH-HHHccCHHHHHHHHHHHHhh
Q 013398 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI-LSAQKRYEDAETILNAALDQ 381 (444)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~-l~~~g~~~eA~~~~~~al~~ 381 (444)
..|++|+ .++|+.+.+|+..|+++.-.|+.++|.+.++++++++|--. .+-...-++ .+.-...++|+..|-+-.+.
T Consensus 359 ~~f~rA~-~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 359 ILFEQAK-IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR-KAVVIKECVDMYVPNPLKNNIKLYYKETES 436 (458)
T ss_pred HHHHHHh-hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh-HHHHHHHHHHHHcCCchhhhHHHHhhcccc
Confidence 9999999 99999999999999999999999999999999999999873 554444444 56678889999988765543
Q ss_pred c
Q 013398 382 T 382 (444)
Q Consensus 382 ~ 382 (444)
.
T Consensus 437 ~ 437 (458)
T PRK11906 437 E 437 (458)
T ss_pred c
Confidence 3
No 145
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.05 E-value=3.2e-07 Score=82.27 Aligned_cols=207 Identities=27% Similarity=0.193 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013398 160 DPSILDHLSFAFSIAGDLSSLATQIEELLP--GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~ 237 (444)
........+..+...+++..+...+...+. ..+.....++.+|..+...+++.+++..+.+++ ..+++........
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 135 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL--ALDPDPDLAEALL 135 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--cCCCCcchHHHHH
Confidence 366778889999999999999999999997 789999999999999999999999999999999 7777764434333
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC-C
Q 013398 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-D 316 (444)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~-~ 316 (444)
...++...+++++|+..+.+++. ..+.. ..........+..+. ..+++++|+..+.+++ ...|. .
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~-~~~~~~~ 201 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALE-LDPEL-NELAEALLALGALLE-----------ALGRYEEALELLEKAL-KLNPDDD 201 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh-cCCCc-cchHHHHHHhhhHHH-----------HhcCHHHHHHHHHHHH-hhCcccc
Confidence 33145567999999999999988 44310 011233333333322 2357899999999999 99999 7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
...+..++..+...+++++|+..+.+++...|+. ...+..++..+...++++++...+.+++...|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPDN-AEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc-HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999996 47888888888877889999999999999999
No 146
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.01 E-value=7.9e-09 Score=84.71 Aligned_cols=98 Identities=21% Similarity=0.180 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC---cHHHH
Q 013398 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE---QGELL 391 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~---~~~~~ 391 (444)
|.++|++|+++-..|+.++|+..|+++++..++.+ ..+++.+|..+..+|++++|+..+++++...| + +..+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p--~~~~~~~l~ 78 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP--DDELNAALR 78 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CccccHHHH
Confidence 46789999999999999999999999999765542 36889999999999999999999999999989 6 67788
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q 013398 392 RTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 392 ~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
..++.++...|+.++|+..+-.++.
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999998877664
No 147
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=6.8e-08 Score=90.68 Aligned_cols=84 Identities=20% Similarity=0.147 Sum_probs=64.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHH
Q 013398 135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVA 214 (444)
Q Consensus 135 ~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A 214 (444)
..+++.||.++.-. .-+.+ .+..+.-.-+|..+...|+|++|...|+-+...+..+.+.|.+||.+.+-+|.|.+|
T Consensus 35 ~rDytGAislLefk---~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 35 NRDYTGAISLLEFK---LNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred cccchhHHHHHHHh---hccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 44677888776211 00111 111234445788999999999999999999998888999999999999999999999
Q ss_pred HHHHHHhh
Q 013398 215 LNLLRTLL 222 (444)
Q Consensus 215 ~~~~~~al 222 (444)
.+.-.+|-
T Consensus 111 ~~~~~ka~ 118 (557)
T KOG3785|consen 111 KSIAEKAP 118 (557)
T ss_pred HHHHhhCC
Confidence 99887766
No 148
>PRK15331 chaperone protein SicA; Provisional
Probab=98.98 E-value=4.1e-09 Score=89.78 Aligned_cols=107 Identities=13% Similarity=0.119 Sum_probs=90.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 013398 306 VSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW 385 (444)
Q Consensus 306 ~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~ 385 (444)
+.+. .+.++.-+..|..|.-++..|++++|...|+-....+|.++ ..|+.||.++..+|+|++|+..|..|..+.+
T Consensus 27 k~l~-gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~-~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-- 102 (165)
T PRK15331 27 KDVH-GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP-DYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-- 102 (165)
T ss_pred HHHh-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--
Confidence 3344 56677777888888888888888888888888888888884 8888888888888888888888888888888
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013398 386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
+++...|+.|.++..+|+.+.|..+|..+++
T Consensus 103 ~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 103 NDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 7888888888888888888888888888887
No 149
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.98 E-value=2.1e-07 Score=84.37 Aligned_cols=189 Identities=18% Similarity=0.145 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHH
Q 013398 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIIN---RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~ 236 (444)
+++.++..|..+...|++.+|+..|++++...|. -+++++.+|.+++..|++++|+..|++-+ +..|+++.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi--~~yP~~~~~--- 78 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI--KLYPNSPKA--- 78 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH--HH-TT-TTH---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCCcch---
Confidence 3445556666666666666666666666554443 24555666666666666666666666666 555554432
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC
Q 013398 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~ 316 (444)
..+++.+|.++..+...........+...+|+..|++.+ ..-|++
T Consensus 79 ----------------------------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li-~~yP~S 123 (203)
T PF13525_consen 79 ----------------------------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI-KRYPNS 123 (203)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH-HH-TTS
T ss_pred ----------------------------------hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH-HHCcCc
Confidence 234444454444432211000011245678999999999 999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc---HHHHHH
Q 013398 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ---GELLRT 393 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~---~~~~~~ 393 (444)
+-+ .+|......+-. .- +.--+..|..|.+.|+|..|+..++.+++..| +. .+++..
T Consensus 124 ~y~--------------~~A~~~l~~l~~---~l-a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp--~t~~~~~al~~ 183 (203)
T PF13525_consen 124 EYA--------------EEAKKRLAELRN---RL-AEHELYIARFYYKRGKYKAAIIRFQYVIENYP--DTPAAEEALAR 183 (203)
T ss_dssp TTH--------------HHHHHHHHHHHH---HH-HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST--TSHHHHHHHHH
T ss_pred hHH--------------HHHHHHHHHHHH---HH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CCchHHHHHHH
Confidence 633 233333332211 11 23344578899999999999999999999999 54 477888
Q ss_pred HHHHHHHhCCHHHHH
Q 013398 394 KAKVQLVQGQLKGAV 408 (444)
Q Consensus 394 la~~~~~~g~~~~A~ 408 (444)
++..+..+|..+.|-
T Consensus 184 l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 184 LAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHTT-HHHHH
T ss_pred HHHHHHHhCChHHHH
Confidence 999999999888443
No 150
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.98 E-value=5.1e-06 Score=83.75 Aligned_cols=364 Identities=13% Similarity=0.077 Sum_probs=238.8
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q 013398 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (444)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (444)
.++.|+.+-.+++ |+..+-+..|..+++..+...+.|.| ...+-..|.+|...|+++.|-..|++
T Consensus 348 nV~eW~kRV~l~e--~~~~~~i~tyteAv~~vdP~ka~Gs~-------------~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 348 NVEEWHKRVKLYE--GNAAEQINTYTEAVKTVDPKKAVGSP-------------GTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred cHHHHHhhhhhhc--CChHHHHHHHHHHHHccCcccCCCCh-------------hhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4567777766654 67788888899888765332222222 24556677899999999999999999
Q ss_pred HhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHH----------H---HHHHh
Q 013398 89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL----------R---KVALK 155 (444)
Q Consensus 89 aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~----------~---~~~l~ 155 (444)
+++.|.. .-+....+--..|++-++. .+++.|..++..+. + +.+..
T Consensus 413 a~~V~y~-~v~dLa~vw~~waemElrh--------------------~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 413 ATKVPYK-TVEDLAEVWCAWAEMELRH--------------------ENFEAALKLMRRATHVPTNPELEYYDNSEPVQA 471 (835)
T ss_pred hhcCCcc-chHHHHHHHHHHHHHHHhh--------------------hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence 9998421 1122233333444443332 23444444432210 0 00000
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC--CChHH
Q 013398 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP--KCLPA 233 (444)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P--~~~~a 233 (444)
+.-....+|...+......|-++.-...|++++.+.--.|..-.|.|..+....-+++|.++|++.+ .+.| .-.+.
T Consensus 472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI--~LFk~p~v~di 549 (835)
T KOG2047|consen 472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGI--SLFKWPNVYDI 549 (835)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCC--ccCCCccHHHH
Confidence 0112456788888888889999999999999999999999999999999999999999999999999 6654 33333
Q ss_pred HHH-HHH-HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh
Q 013398 234 LLI-ASK-ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (444)
Q Consensus 234 ~~~-~~~-~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~ 311 (444)
|.. +.. +....+-..+.|...|+++|+..||.. +...+.+ |.+.. ++-|....|++.|++|.+.
T Consensus 550 W~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~----aKtiyLl---YA~lE-------Ee~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 550 WNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEH----AKTIYLL---YAKLE-------EEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH----HHHHHHH---HHHHH-------HHhhHHHHHHHHHHHHHhc
Confidence 321 111 111235578999999999999777642 2222221 11111 2235667899999998856
Q ss_pred hCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCChHH-HHHHHHHHHHccCHHHHHHHHHHHHhh-cCCCCcH
Q 013398 312 TNMRDLSILYRLSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKG-WLLMARILSAQKRYEDAETILNAALDQ-TGKWEQG 388 (444)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~-~~~la~~l~~~g~~~eA~~~~~~al~~-~P~~~~~ 388 (444)
.+|.+--..+++-..-+. .=-...-...|++|++.=|+..+.. -...+..-.+.|..+.|..+|.-+-+. +|+ .+.
T Consensus 616 v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr-~~~ 694 (835)
T KOG2047|consen 616 VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPR-VTT 694 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCc-CCh
Confidence 667666666665433221 1224456788999999999864322 235688889999999999999888875 454 467
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCcc
Q 013398 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDK 429 (444)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 429 (444)
+.|-.--....+.|+ .+.|+..|.+.....-+-..+.
T Consensus 695 ~fW~twk~FEvrHGn----edT~keMLRikRsvqa~yn~~~ 731 (835)
T KOG2047|consen 695 EFWDTWKEFEVRHGN----EDTYKEMLRIKRSVQATYNTDV 731 (835)
T ss_pred HHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHhhhhhH
Confidence 777766677778888 4567777776665554444333
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.97 E-value=1.6e-07 Score=87.49 Aligned_cols=177 Identities=15% Similarity=-0.014 Sum_probs=122.4
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH---HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013398 193 NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL---LIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (444)
Q Consensus 193 ~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~---~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~ 269 (444)
..+..+|..|..++..|++++|+..|++++ ...|+.+.+. +.+|.+++. .+++++|+..+++.++..|.++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~-- 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPN-- 104 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCc--
Confidence 477889999999999999999999999999 8999987654 566666554 78999999999999998777653
Q ss_pred hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013398 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
...+++.+|.++...+. ..+..-. .+++.+ ..+....+|+..|++.++.-|+
T Consensus 105 ~~~a~Y~~g~~~~~~~~----------------~~~~~~~-~~~~~~-----------rD~~~~~~A~~~~~~li~~yP~ 156 (243)
T PRK10866 105 IDYVLYMRGLTNMALDD----------------SALQGFF-GVDRSD-----------RDPQHARAAFRDFSKLVRGYPN 156 (243)
T ss_pred hHHHHHHHHHhhhhcch----------------hhhhhcc-CCCccc-----------cCHHHHHHHHHHHHHHHHHCcC
Confidence 35678888877543211 1122222 222221 1123356799999999999999
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 350 ~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
.. - ..+|...+...-. .-..--+..|..+.+.|++..|+..++.+++-.|+-.
T Consensus 157 S~-y--------------a~~A~~rl~~l~~-----~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~ 209 (243)
T PRK10866 157 SQ-Y--------------TTDATKRLVFLKD-----RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ 209 (243)
T ss_pred Ch-h--------------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc
Confidence 63 2 1222222111111 1122233678888899999999999999998777543
No 152
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.96 E-value=2.7e-06 Score=85.75 Aligned_cols=255 Identities=12% Similarity=0.045 Sum_probs=175.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcC-CCCCC-----HHHHHHHHHHHHHCCCchHHHHHHHHhhc
Q 013398 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLP-GIINR-----KERYHILALCYYGAGEDLVALNLLRTLLS 223 (444)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~l~~~g~~~~A~~~~~~al~ 223 (444)
...++.++|++.+-|.....+ ..|+..+-+..|..|++ .+|.. ...|..+|..|...|+.+.|...|++++
T Consensus 338 NsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~- 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT- 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh-
Confidence 466778899998888765544 46888888888887764 45543 3578899999999999999999999999
Q ss_pred CCCCCCCh----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc------hhhhHHHHHhh-hhhhhhhhhhhchH
Q 013398 224 GSEDPKCL----PALLIASKICGEYPDLAEEGATFASRALECLGDGCD------QMESTANCLLG-ISLSAQSKVAITDF 292 (444)
Q Consensus 224 ~~~~P~~~----~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~------~~~~~a~~~lg-~~~~~~~~~~~~~~ 292 (444)
+.+=..+ .+|..-|.+-+. ..+++.|+...+++.. .|..+. ....++..... .++..-.+..
T Consensus 415 -~V~y~~v~dLa~vw~~waemElr-h~~~~~Al~lm~~A~~-vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle---- 487 (835)
T KOG2047|consen 415 -KVPYKTVEDLAEVWCAWAEMELR-HENFEAALKLMRRATH-VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE---- 487 (835)
T ss_pred -cCCccchHHHHHHHHHHHHHHHh-hhhHHHHHHHHHhhhc-CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH----
Confidence 4443322 233333444344 4578889999888887 444321 00011111100 0111111100
Q ss_pred HHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHH---ccCH
Q 013398 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-LKGWLLMARILSA---QKRY 368 (444)
Q Consensus 293 ~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-~~~~~~la~~l~~---~g~~ 368 (444)
+..|-++.-..+|++++ .+.=-.|....|.|..+.+..-+++|.+.|+|.+.|.|-.. .+.|+..-..+.+ -...
T Consensus 488 Es~gtfestk~vYdrii-dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRII-DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHhccHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 12355677788999999 99999999999999999999999999999999999986521 3566654333333 2467
Q ss_pred HHHHHHHHHHHhhcCCCCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013398 369 EDAETILNAALDQTGKWEQ-GELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 369 ~eA~~~~~~al~~~P~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
+.|...|++||+.-|. .+ -.++...+++..+.|-...|++.|+++-.
T Consensus 567 EraRdLFEqaL~~Cpp-~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 567 ERARDLFEQALDGCPP-EHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8899999999998873 33 45566778899999999999999988753
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.95 E-value=1.9e-08 Score=86.13 Aligned_cols=119 Identities=18% Similarity=0.061 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---HHHHH
Q 013398 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILY 321 (444)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~---~~a~~ 321 (444)
.++...+...+++.++..|.. .+...+.+.++.++... |++++|+..|++++ ...|++ +.+.+
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s--~ya~~A~l~lA~~~~~~-----------g~~~~A~~~l~~~~-~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSS--PYAALAALQLAKAAYEQ-----------GDYDEAKAALEKAL-ANAPDPELKPLARL 89 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-hhCCCHHHHHHHHH
Confidence 456666777777777754443 24457777888877654 67899999999999 877766 45788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013398 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (444)
Q Consensus 322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al 379 (444)
.||.++...|++++|+..++.. .-.+-. ..++..+|.++..+|++++|+..|++||
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~-~~~~~~-~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQI-PDEAFK-ALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-cCcchH-HHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999999773 333333 3788899999999999999999999885
No 154
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.93 E-value=1.3e-08 Score=95.53 Aligned_cols=106 Identities=9% Similarity=0.100 Sum_probs=57.4
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHH
Q 013398 317 LSILYRLSLEY-AEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLR 392 (444)
Q Consensus 317 ~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-~~~~~~~ 392 (444)
...+|..|..+ ...|++++|+..|++.++..|+++ ..+++.+|.++..+|++++|+..|+++++..|+. ..+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34445554444 334556666666666666555541 1455555666666666666666666665555510 1345555
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
.+|.++..+|++++|...|+++++.+|+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 555565556666666666666655555433
No 155
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.93 E-value=1.7e-06 Score=77.51 Aligned_cols=224 Identities=23% Similarity=0.182 Sum_probs=185.4
Q ss_pred cCCHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCC--CCCCChHHHHHHHHHHhcCCCCHH
Q 013398 174 AGDLSSLATQIEELLPGIIN--RKERYHILALCYYGAGEDLVALNLLRTLLSGS--EDPKCLPALLIASKICGEYPDLAE 249 (444)
Q Consensus 174 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~--~~P~~~~a~~~~~~~~~~~~~~~~ 249 (444)
.+.+..+...+...+...+. ........+..+...+++..+...+...+ . ..|.....+...+... ...+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~ 112 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKAL--ELELLPNLAEALLNLGLLL-EALGKYE 112 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHH--hhhhccchHHHHHHHHHHH-HHHhhHH
Confidence 57788888999999988887 48889999999999999999999999999 6 5777776666555544 4467788
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhh-hhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC---CCHHHHHHHHH
Q 013398 250 EGATFASRALECLGDGCDQMESTANCLLGI-SLSAQSKVAITDFDRATRQAKALQALVSAARSTNM---RDLSILYRLSL 325 (444)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~-~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P---~~~~a~~~lg~ 325 (444)
+++..+.+++...+.. .......+. ++.. .+++++|+..|.+++ ..+| ........++.
T Consensus 113 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 113 EALELLEKALALDPDP-----DLAEALLALGALYE-----------LGDYEEALELYEKAL-ELDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHcCCCCc-----chHHHHHHHHHHHH-----------cCCHHHHHHHHHHHH-hcCCCccchHHHHHHhhh
Confidence 9999999999844332 122333333 3433 467899999999999 8888 46677788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH
Q 013398 326 EYAEQRKLNAAHYYAKMLLKLEGG-SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL 404 (444)
Q Consensus 326 ~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~ 404 (444)
.+...+++++|+..+.+++...|. .. ..+..++..+...+++++|+..+.+++...| .....+...+..+...|..
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 252 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDA-EALLNLGLLYLKLGKYEEALEYYEKALELDP--DNAEALYNLALLLLELGRY 252 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccch-HHHHHhhHHHHHcccHHHHHHHHHHHHhhCc--ccHHHHhhHHHHHHHcCCH
Confidence 888999999999999999999999 64 9999999999999999999999999999999 6677788888888888889
Q ss_pred HHHHHHHHHHHHHHHh
Q 013398 405 KGAVETYTHLLAALQV 420 (444)
Q Consensus 405 ~~A~~~~~~al~l~~~ 420 (444)
+++...+.+++...+.
T Consensus 253 ~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 253 EEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 9999999999998875
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.91 E-value=2.4e-08 Score=95.42 Aligned_cols=183 Identities=19% Similarity=0.152 Sum_probs=93.0
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013398 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (444)
Q Consensus 10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (444)
++.|...|.+|...|+|++|.+.|.++.+...+.- .+ ..-..++...+.+|.+. ++++|+..|+++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~---~~----------~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A 100 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG---DK----------FEAAKAYEEAANCYKKG-DPDEAIECYEKA 100 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----H----------HHHHHHHHHHHHHHHHT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC---CH----------HHHHHHHHHHHHHHHhh-CHHHHHHHHHHH
Confidence 56677788888888899999998888877654421 11 11235666666776655 888999999888
Q ss_pred hCc-CCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCC-CcHHHHHHHHHHHHHHHHHhhCCC---CHHHH
Q 013398 90 LLP-CWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPR-NNIEEAILLLMILLRKVALKRIEW---DPSIL 164 (444)
Q Consensus 90 L~~-~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~eAi~~l~~~~~~~~l~~~p~---~~~~~ 164 (444)
+.+ ...-++.........+|. +|... +++++|+..+..+.. ....... -...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA~--------------------~ye~~~~d~e~Ai~~Y~~A~~--~y~~e~~~~~a~~~~ 158 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELAE--------------------IYEEQLGDYEKAIEYYQKAAE--LYEQEGSPHSAAECL 158 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHH--------------------HHCCTT--HHHHHHHHHHHHH--HHHHTT-HHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHH--------------------HHHHHcCCHHHHHHHHHHHHH--HHHHCCChhhHHHHH
Confidence 876 111122222222222332 23333 455556555533310 0011010 12244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCCCCC----H---HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013398 165 DHLSFAFSIAGDLSSLATQIEELLPGIINR----K---ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (444)
Q Consensus 165 ~~lg~~l~~~g~~~~A~~~~~~al~~~p~~----~---~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~ 230 (444)
..+|.++.+.|+|++|++.|+++....-++ . +.++..+.+++..|++..|...+++.. ..+|..
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~--~~~~~F 229 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC--SQDPSF 229 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG--TTSTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCC
Confidence 455555555556666665555554332111 1 223444555555555555555555555 555543
No 157
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.90 E-value=4.5e-08 Score=88.83 Aligned_cols=180 Identities=16% Similarity=0.108 Sum_probs=116.6
Q ss_pred ccCccccCCCcHHHHHHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH---HHHHH
Q 013398 127 QMGSSFVPRNNIEEAILLLMILLRKVALKRIEW---DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHI 200 (444)
Q Consensus 127 ~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~---~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 200 (444)
..+..+...|++++|+..+ +.+....|. .+.+...+|.++...|+++.|+..|++.++..|+++ .+++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f-----~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLF-----EKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHH-----HHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH-----HHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 4455667889999999986 455666665 456889999999999999999999999999988865 57888
Q ss_pred HHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhh
Q 013398 201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS 280 (444)
Q Consensus 201 la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 280 (444)
+|.+++.+. ...+ ..+ ...+...+|+..++..++..|.+.- ...+...
T Consensus 85 ~g~~~~~~~---------~~~~--~~~---------------~D~~~~~~A~~~~~~li~~yP~S~y--~~~A~~~---- 132 (203)
T PF13525_consen 85 LGLSYYKQI---------PGIL--RSD---------------RDQTSTRKAIEEFEELIKRYPNSEY--AEEAKKR---- 132 (203)
T ss_dssp HHHHHHHHH---------HHHH---TT------------------HHHHHHHHHHHHHHHH-TTSTT--HHHHHHH----
T ss_pred HHHHHHHhC---------ccch--hcc---------------cChHHHHHHHHHHHHHHHHCcCchH--HHHHHHH----
Confidence 888776651 1111 011 1223455788889999998876531 1122111
Q ss_pred hhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHH
Q 013398 281 LSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLM 358 (444)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~l 358 (444)
+..++..+ ..--+.+|..|.+.|.+..|+..++.+++--|+.+ .+++..+
T Consensus 133 ---------------------l~~l~~~l-------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 133 ---------------------LAELRNRL-------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp ---------------------HHHHHHHH-------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred ---------------------HHHHHHHH-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 22222223 23345677788888888888888888888888752 1466777
Q ss_pred HHHHHHccCHHHH
Q 013398 359 ARILSAQKRYEDA 371 (444)
Q Consensus 359 a~~l~~~g~~~eA 371 (444)
+..+..+|..+.|
T Consensus 185 ~~~y~~l~~~~~a 197 (203)
T PF13525_consen 185 AEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHTT-HHHH
T ss_pred HHHHHHhCChHHH
Confidence 7788888877744
No 158
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.90 E-value=2.9e-08 Score=93.21 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHH
Q 013398 296 TRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYED 370 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~e 370 (444)
+++++|+..|++.+ ...|++ +.+++.+|.+|...|++++|+..|++++...|+++ ..+++.+|.++..+|++++
T Consensus 157 ~~y~~Ai~af~~fl-~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 157 SRQDDAIVAFQNFV-KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred CCHHHHHHHHHHHH-HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 57899999999999 999999 58999999999999999999999999999998852 3789999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHH
Q 013398 371 AETILNAALDQTGKWEQGEL 390 (444)
Q Consensus 371 A~~~~~~al~~~P~~~~~~~ 390 (444)
|+..|+++++..| ++..+
T Consensus 236 A~~~~~~vi~~yP--~s~~a 253 (263)
T PRK10803 236 AKAVYQQVIKKYP--GTDGA 253 (263)
T ss_pred HHHHHHHHHHHCc--CCHHH
Confidence 9999999999999 66543
No 159
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.88 E-value=1.1e-08 Score=100.36 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=68.1
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH---HHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG---WLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~---~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
..+|+++.+|+++|.+|..+|++++|+..|++|++++|++. ++ |+++|.+|..+|++++|+.++++|+++.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a-eA~~A~yNLAcaya~LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD-EAQAAYYNKACCHAYREEGKKAADCLRTALRDYN 143 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 67999999999999999999999999999999999999984 55 99999999999999999999999999843
No 160
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.4e-08 Score=94.82 Aligned_cols=125 Identities=16% Similarity=0.120 Sum_probs=105.7
Q ss_pred HHhhHHHHHHHHHHHHHhhCC----CCH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013398 294 RATRQAKALQALVSAARSTNM----RDL-----------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P----~~~-----------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (444)
+.|++..|...|++|+ ..=+ .+. .++.||+.++.+++++.+|+..+.++|+++|+| ..+++..
T Consensus 220 K~gk~~~A~~~Yerav-~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N-~KALyRr 297 (397)
T KOG0543|consen 220 KEGKFKLAKKRYERAV-SFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN-VKALYRR 297 (397)
T ss_pred hhchHHHHHHHHHHHH-HHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc-hhHHHHH
Confidence 3467888888888887 4322 111 267899999999999999999999999999999 5999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHhhh
Q 013398 359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGA-VETYTHLLAALQVQT 422 (444)
Q Consensus 359 a~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~l~~~~~ 422 (444)
|.++..+|+|+.|+..|++|+++.| +|-.+..-+..+..+..++.+. .+.|.+.+.-.....
T Consensus 298 G~A~l~~~e~~~A~~df~ka~k~~P--~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~ 360 (397)
T KOG0543|consen 298 GQALLALGEYDLARDDFQKALKLEP--SNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEES 360 (397)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999 8988888888888777777654 788999988776443
No 161
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=9.2e-08 Score=87.94 Aligned_cols=216 Identities=14% Similarity=0.053 Sum_probs=161.8
Q ss_pred HhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHH
Q 013398 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEG 251 (444)
Q Consensus 172 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA 251 (444)
.+..+|..||+++..-.+.+|.+-.....||-+|+...+|..|-.+|++.- .+.|....-.++-+...|. .+.+.+|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~--ql~P~~~qYrlY~AQSLY~-A~i~ADA 97 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLG--QLHPELEQYRLYQAQSLYK-ACIYADA 97 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhChHHHHHHHHHHHHHHH-hcccHHH
Confidence 455689999999999999999999999999999999999999999999999 8999988777766776654 5677777
Q ss_pred HHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH
Q 013398 252 ATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM--RDLSILYRLSLEYAE 329 (444)
Q Consensus 252 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P--~~~~a~~~lg~~~~~ 329 (444)
+.......+ + +.+..++.-.-+.+... .+++..+ +..+ ..-| ++++...+.|.++++
T Consensus 98 LrV~~~~~D----~-~~L~~~~lqLqaAIkYs-----------e~Dl~g~----rsLv-eQlp~en~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 98 LRVAFLLLD----N-PALHSRVLQLQAAIKYS-----------EGDLPGS----RSLV-EQLPSENEADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHhcC----C-HHHHHHHHHHHHHHhcc-----------cccCcch----HHHH-HhccCCCccchhccchheeec
Confidence 765443322 2 22222222221111111 1223333 3344 5556 788999999999999
Q ss_pred cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH----hhcCCC--------------C-----
Q 013398 330 QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL----DQTGKW--------------E----- 386 (444)
Q Consensus 330 ~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al----~~~P~~--------------~----- 386 (444)
.|++++|++-|+.|+....-++ -.-++++.+++..|+|+.|+++....+ +..|.. .
T Consensus 157 egqyEaAvqkFqaAlqvsGyqp-llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 9999999999999999998886 777789999999999999998766555 455621 0
Q ss_pred ----cHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013398 387 ----QGELLRTKAKVQLVQGQLKGAVETYT 412 (444)
Q Consensus 387 ----~~~~~~~la~~~~~~g~~~~A~~~~~ 412 (444)
-.+++..++.++.+.|+++.|.+.+.
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 13566778889999999998887653
No 162
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=9.9e-08 Score=91.71 Aligned_cols=145 Identities=12% Similarity=0.080 Sum_probs=113.1
Q ss_pred HHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013398 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (444)
Q Consensus 199 ~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg 278 (444)
-..|..|++.|+|..|...|++|+ ..-+ +...-..++. +++.+ ....++.+++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav--~~l~-------------~~~~~~~ee~----~~~~~--------~k~~~~lNlA 264 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAV--SFLE-------------YRRSFDEEEQ----KKAEA--------LKLACHLNLA 264 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHH--HHhh-------------ccccCCHHHH----HHHHH--------HHHHHhhHHH
Confidence 346889999999999999999999 2211 1111111111 12222 1245789999
Q ss_pred hhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013398 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (444)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (444)
.|+.++ +++.+|+..-.+++ ..+|+|..++|..|.++..+|+++.|+..|+++++++|++. .+...+
T Consensus 265 ~c~lKl-----------~~~~~Ai~~c~kvL-e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk-a~~~el 331 (397)
T KOG0543|consen 265 ACYLKL-----------KEYKEAIESCNKVL-ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK-AARAEL 331 (397)
T ss_pred HHHHhh-----------hhHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH-HHHHHH
Confidence 999765 57899999999999 99999999999999999999999999999999999999994 888888
Q ss_pred HHHHHHccCHHHH-HHHHHHHHhhcC
Q 013398 359 ARILSAQKRYEDA-ETILNAALDQTG 383 (444)
Q Consensus 359 a~~l~~~g~~~eA-~~~~~~al~~~P 383 (444)
..+-.+..++.+. ...|.+.+..-+
T Consensus 332 ~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 332 IKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8888777777665 678888886544
No 163
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.85 E-value=1.2e-08 Score=75.14 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=33.5
Q ss_pred HcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013398 329 EQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (444)
Q Consensus 329 ~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la 395 (444)
..|++++|+..|++++..+|++ ..++..+|.++..+|++++|...+++++..+| +++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDP--DNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT--THHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CHHHHHHHHh
Confidence 3455555555555555555555 35555555555555555555555555555555 4444444443
No 164
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=1.2e-07 Score=83.40 Aligned_cols=179 Identities=15% Similarity=0.067 Sum_probs=120.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013398 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (444)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~ 230 (444)
...++..|+-+++++.+|.-+...|+++.|.+.|...++++|.+.-++.|.|..++--||++-|.+-+.+-- +.||++
T Consensus 89 tQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY--Q~D~~D 166 (297)
T COG4785 89 SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY--QDDPND 166 (297)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHH--hcCCCC
Confidence 345678899999999999999999999999999999999999999999999999999999999999999999 899998
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHH
Q 013398 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (444)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~ 310 (444)
|-=-+.+-- ....-++.+|...+.+--+..... ..+|+..+.-+-+....+ -..+.....+--..+-+.+
T Consensus 167 PfR~LWLYl--~E~k~dP~~A~tnL~qR~~~~d~e-----~WG~~iV~~yLgkiS~e~--l~~~~~a~a~~n~~~Ae~L- 236 (297)
T COG4785 167 PFRSLWLYL--NEQKLDPKQAKTNLKQRAEKSDKE-----QWGWNIVEFYLGKISEET--LMERLKADATDNTSLAEHL- 236 (297)
T ss_pred hHHHHHHHH--HHhhCCHHHHHHHHHHHHHhccHh-----hhhHHHHHHHHhhccHHH--HHHHHHhhccchHHHHHHH-
Confidence 842222111 123345666665554333322211 223333332221111000 0000000000011222222
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013398 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (444)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 347 (444)
.++++.||.-+...|+.++|...|+-|++-+
T Consensus 237 ------TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 ------TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred ------HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999888754
No 165
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.83 E-value=2e-08 Score=75.00 Aligned_cols=71 Identities=27% Similarity=0.291 Sum_probs=58.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013398 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK 396 (444)
Q Consensus 323 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~ 396 (444)
|..+|...+++++|++.+++++.++|+++ ..|..+|.++..+|++++|+..++++++..| ++..+...++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p--~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDP-ELWLQRARCLFQLGRYEEALEDLERALELSP--DDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccc-hhhHHHHHHHHHhccHHHHHHHHHHHHHHCC--CcHHHHHHHHh
Confidence 35677888888888888888888888884 8888888888888888888888888888888 77776665544
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.83 E-value=7.6e-08 Score=78.92 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=83.1
Q ss_pred HHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013398 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
+++.++.++... |+.++|+..|++++ ...++. ..++..+|.++..+|++++|+..+++++.-.|+
T Consensus 3 ~~~~~A~a~d~~-----------G~~~~Ai~~Y~~Al-~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSL-----------GREEEAIPLYRRAL-AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred hHHHHHHHHHhc-----------CCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 567777776554 67899999999999 887665 468899999999999999999999999999898
Q ss_pred ---CChHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013398 350 ---SNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (444)
Q Consensus 350 ---~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~ 381 (444)
+. .....++.++...|+++||+.++-.++..
T Consensus 71 ~~~~~-~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 71 DELNA-ALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred ccccH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 63 77888999999999999999999888753
No 167
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.83 E-value=8.3e-08 Score=94.68 Aligned_cols=112 Identities=19% Similarity=0.117 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013398 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
+++++|++.|++.. +.+|+ +...++.++...++-.+|++.+.+++..+|.+ ...+...+..+...++++.|+.+.
T Consensus 183 ~~~~~ai~lle~L~-~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 183 QRYDEAIELLEKLR-ERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred ccHHHHHHHHHHHH-hcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 56899999999998 88765 66778999999999999999999999999998 699999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013398 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (444)
Q Consensus 376 ~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 414 (444)
++++...| ++...|+.++.+|..+|++++|+..++.+
T Consensus 258 k~av~lsP--~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 258 KKAVELSP--SEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhCc--hhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999 99999999999999999999999877754
No 168
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.80 E-value=1.3e-08 Score=75.96 Aligned_cols=69 Identities=20% Similarity=0.130 Sum_probs=64.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013398 167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (444)
Q Consensus 167 lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~ 237 (444)
|..++...+++++|++++++++.++|+++..|+.+|.++..+|++++|+..|++++ +..|+++.+....
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l--~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL--ELSPDDPDARALR 69 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH--HHCCCcHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999 8999998876543
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.79 E-value=1.9e-08 Score=74.05 Aligned_cols=65 Identities=22% Similarity=0.172 Sum_probs=59.2
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 013398 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~ 361 (444)
.|++++|++.|++++ ..+|+|+++++.+|.++.+.|++++|...+++++..+|+++ ..+..++.+
T Consensus 4 ~~~~~~A~~~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~l~a~i 68 (68)
T PF14559_consen 4 QGDYDEAIELLEKAL-QRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP-EYQQLLAQI 68 (68)
T ss_dssp TTHHHHHHHHHHHHH-HHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH-HHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH-HHHHHHhcC
Confidence 578999999999999 99999999999999999999999999999999999999984 777777653
No 170
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.78 E-value=1.1e-06 Score=94.99 Aligned_cols=220 Identities=12% Similarity=0.003 Sum_probs=172.8
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH----HHHHHHHHHhcCCCCHHH
Q 013398 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP----ALLIASKICGEYPDLAEE 250 (444)
Q Consensus 175 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~----a~~~~~~~~~~~~~~~~e 250 (444)
++-.+..+-|++.+.-+|+++-.|.++-....+.++.++|.+..++||+ .++|..-+ .|..+.++- ..-|.-+.
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~-tIN~REeeEKLNiWiA~lNlE-n~yG~ees 1515 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALK-TINFREEEEKLNIWIAYLNLE-NAYGTEES 1515 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhh-hCCcchhHHHHHHHHHHHhHH-HhhCcHHH
Confidence 3334456778899999999999999999999999999999999999997 78876432 121111111 11244445
Q ss_pred HHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 013398 251 GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ 330 (444)
Q Consensus 251 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~ 330 (444)
-.+.|+||-+...+ ...|..|.-+|.. .+.+++|.+.|+..+ +.-.+...+|...|..+.++
T Consensus 1516 l~kVFeRAcqycd~------~~V~~~L~~iy~k-----------~ek~~~A~ell~~m~-KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDA------YTVHLKLLGIYEK-----------SEKNDEADELLRLML-KKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHHHHHHHhcch------HHHHHHHHHHHHH-----------hhcchhHHHHHHHHH-HHhcchhhHHHHHHHHHhcc
Confidence 56667777764332 2455556556643 467899999999999 66668899999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHH
Q 013398 331 RKLNAAHYYAKMLLKLEGG--SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAV 408 (444)
Q Consensus 331 g~~~~A~~~~~~al~l~P~--~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~ 408 (444)
.+-++|...+++|+.--|. | .+.....+.+.++.|+-+.+...|+..+...| .-.++|.-......++|..+-..
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eH-v~~IskfAqLEFk~GDaeRGRtlfEgll~ayP--KRtDlW~VYid~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEH-VEFISKFAQLEFKYGDAERGRTLFEGLLSAYP--KRTDLWSVYIDMEIKHGDIKYVR 1654 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhh-HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc--cchhHHHHHHHHHHccCCHHHHH
Confidence 9999999999999999998 6 57888889999999999999999999999999 67889999999999999999999
Q ss_pred HHHHHHHHH
Q 013398 409 ETYTHLLAA 417 (444)
Q Consensus 409 ~~~~~al~l 417 (444)
..|++++.+
T Consensus 1655 ~lfeRvi~l 1663 (1710)
T KOG1070|consen 1655 DLFERVIEL 1663 (1710)
T ss_pred HHHHHHHhc
Confidence 999999764
No 171
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=6.3e-08 Score=84.12 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=57.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCC----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013398 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSN----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL 399 (444)
Q Consensus 324 g~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~ 399 (444)
|.-+...|+|++|..-|..||++-|..+ ..+|.+.|.++.+++..+.|+..+.+||+++| .+..++..+|.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p--ty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP--TYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc--hhHHHHHHHHHHHH
Confidence 4455555666666666666666665532 12444556666666666666666666666666 55555556666666
Q ss_pred HhCCHHHHHHHHHHHHHHHHhhh
Q 013398 400 VQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 400 ~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
++.++++|++.|++++++.|++.
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchH
Confidence 66666666666666666655554
No 172
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.75 E-value=3.8e-08 Score=96.60 Aligned_cols=70 Identities=17% Similarity=0.119 Sum_probs=66.0
Q ss_pred hhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013398 345 KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE---LLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (444)
Q Consensus 345 ~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~l 417 (444)
.-+|++ ..+|+++|.+|..+|+|++|+..|++||+++| ++.+ +|+++|.++..+|++++|++++++++++
T Consensus 69 ~~dP~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P--d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKT-AEDAVNLGLSLFSKGRVKDALAQFETALELNP--NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 368999 59999999999999999999999999999999 7775 4999999999999999999999999998
No 173
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.70 E-value=2.6e-07 Score=79.57 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=75.8
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 013398 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ----------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~----------g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~ 364 (444)
.--++.|.+.++... ..||.|++.+++=|.++.++ .-+++|+.-|++||.++|+. ..++..+|.+++.
T Consensus 4 l~~FE~ark~aea~y-~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~ts 81 (186)
T PF06552_consen 4 LLFFEHARKKAEAAY-AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHH
Confidence 345789999999999 99999999999999998765 34678899999999999998 5999999999998
Q ss_pred ccC-----------HHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013398 365 QKR-----------YEDAETILNAALDQTGKWEQGELLRT 393 (444)
Q Consensus 365 ~g~-----------~~eA~~~~~~al~~~P~~~~~~~~~~ 393 (444)
++. |++|..+|++|...+| +|...+..
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P--~ne~Y~ks 119 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDP--NNELYRKS 119 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH-T--T-HHHHHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhcCC--CcHHHHHH
Confidence 864 7889999999999999 66554433
No 174
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.70 E-value=9.3e-09 Score=95.98 Aligned_cols=224 Identities=12% Similarity=0.021 Sum_probs=141.3
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Q 013398 130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG 209 (444)
Q Consensus 130 ~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g 209 (444)
+-|..+|+|+|||..+ ...+...|.++-.+.+.+.+|.++++|..|..-++.|+.++..+..+|...|.+-..+|
T Consensus 105 N~yFKQgKy~EAIDCY-----s~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCY-----STAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhccchhHHHHHh-----hhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4566777777777765 33456667777777777777777777777777777777777777777777777777777
Q ss_pred CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH----Hhhhhhhhhh
Q 013398 210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC----LLGISLSAQS 285 (444)
Q Consensus 210 ~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~----~lg~~~~~~~ 285 (444)
...+|.+-++.+| .+.|++.+..-..+.+. ...|+ +-++.-.+...+.+-..+.. --|..++
T Consensus 180 ~~~EAKkD~E~vL--~LEP~~~ELkK~~a~i~-----Sl~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fs--- 245 (536)
T KOG4648|consen 180 NNMEAKKDCETVL--ALEPKNIELKKSLARIN-----SLRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFS--- 245 (536)
T ss_pred hHHHHHHhHHHHH--hhCcccHHHHHHHHHhc-----chHhh----hHHhhcCCCCCccccchhhhccccCcchhhh---
Confidence 7777777777777 77777665432222221 11111 00111011100000000000 0122222
Q ss_pred hhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc
Q 013398 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ 365 (444)
Q Consensus 286 ~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~ 365 (444)
+.+.+..++.+|.+-+ ..+.++.....+ +..+.+..++++|+..+-+++-++|... ...-.-+..-.-.
T Consensus 246 --------k~~~~~~~i~~~~~~~-A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~-~~~s~~~~A~T~~ 314 (536)
T KOG4648|consen 246 --------KKAMRSVPVVDVVSPR-ATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPM-PDTSGPPKAETIA 314 (536)
T ss_pred --------hhhccccceeEeeccc-cccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcC-cccCCCchhHHHH
Confidence 2355677777777776 666666655555 6677777888888888888888888763 6666666666667
Q ss_pred cCHHHHHHHHHHHHhhcC
Q 013398 366 KRYEDAETILNAALDQTG 383 (444)
Q Consensus 366 g~~~eA~~~~~~al~~~P 383 (444)
|...|+...++.++.+.|
T Consensus 315 ~~~~E~K~~~~T~~~~~P 332 (536)
T KOG4648|consen 315 KTSKEVKPTKQTAVKVAP 332 (536)
T ss_pred hhhhhcCcchhheeeecc
Confidence 778888888888888887
No 175
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=1e-06 Score=77.77 Aligned_cols=97 Identities=14% Similarity=0.023 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHH
Q 013398 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKIC 241 (444)
Q Consensus 162 ~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~ 241 (444)
..++..|..|-..|-..-|.--|.+++.+.|+-+++++.||.-+...|+|+.|...|.-++ .+||.+-.++++.|. .
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~--ELDp~y~Ya~lNRgi-~ 142 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL--ELDPTYNYAHLNRGI-A 142 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh--ccCCcchHHHhccce-e
Confidence 3566778888888888888888999999999999999999999999999999999999999 899998877765543 3
Q ss_pred hcCCCCHHHHHHHHHHHHHH
Q 013398 242 GEYPDLAEEGATFASRALEC 261 (444)
Q Consensus 242 ~~~~~~~~eA~~~~~~al~~ 261 (444)
+.-.|++.-|..-+.+.-+.
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred eeecCchHhhHHHHHHHHhc
Confidence 33467776666666666553
No 176
>PRK15331 chaperone protein SicA; Provisional
Probab=98.69 E-value=2.2e-07 Score=79.27 Aligned_cols=90 Identities=8% Similarity=0.013 Sum_probs=84.3
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013398 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~ 374 (444)
.|++++|...|+-.. ..||.|++-|+.||.++..+|++++|+..|..|..+++++| ...+..|.++..+|+.++|+.+
T Consensus 50 ~Gk~~eA~~~F~~L~-~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp-~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 50 QGRLDEAETFFRFLC-IYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY-RPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred CCCHHHHHHHHHHHH-HhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-CccchHHHHHHHhCCHHHHHHH
Confidence 478999999999999 99999999999999999999999999999999999999997 8889999999999999999999
Q ss_pred HHHHHhhcCCCCcHH
Q 013398 375 LNAALDQTGKWEQGE 389 (444)
Q Consensus 375 ~~~al~~~P~~~~~~ 389 (444)
|+.+++ .| .+..
T Consensus 128 f~~a~~-~~--~~~~ 139 (165)
T PRK15331 128 FELVNE-RT--EDES 139 (165)
T ss_pred HHHHHh-Cc--chHH
Confidence 999998 46 5443
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.67 E-value=1.3e-06 Score=83.50 Aligned_cols=102 Identities=19% Similarity=0.138 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-C-c--
Q 013398 318 SILYRLSLEYAEQ-RKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-E-Q-- 387 (444)
Q Consensus 318 ~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-~-~-- 387 (444)
..+..+|.+|... |++++|+++|++|+++-.... ..++..+|.++...|+|++|+..|++.....-+. - .
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 3556777788777 888888888888888633211 2466788888888899999999998888643200 1 1
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013398 388 -GELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 388 -~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
...++..+.+++..|++..|...+++.....|
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 13455667788888888888888887766655
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.66 E-value=3.2e-06 Score=72.94 Aligned_cols=130 Identities=23% Similarity=0.247 Sum_probs=113.6
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-
Q 013398 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS- 350 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~- 350 (444)
.-.+-||..+.. .|++.||...|++++.-+--+|+..+..++.+....++..+|...+++..+-+|..
T Consensus 90 qnr~rLa~al~e-----------lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 90 QNRYRLANALAE-----------LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHHHHHHHH-----------hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 345667777654 46799999999999955778999999999999999999999999999999999974
Q ss_pred -ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013398 351 -NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 351 -~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
+ .....+|.++..+|++.+|.+.++.++.-.| .+.+....+..+..+|+.++|-..|..+.+
T Consensus 159 ~p-d~~Ll~aR~laa~g~~a~Aesafe~a~~~yp---g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 159 SP-DGHLLFARTLAAQGKYADAESAFEVAISYYP---GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred CC-CchHHHHHHHHhcCCchhHHHHHHHHHHhCC---CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4 6888999999999999999999999999999 567788889999999999999888877654
No 179
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=2.5e-05 Score=71.28 Aligned_cols=222 Identities=18% Similarity=0.071 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHH
Q 013398 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (444)
Q Consensus 159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~ 238 (444)
.+.+.-..+.++|..+|++..-+..-...- -....+...++..+..-++.++=+....+.+. ...-+.......++
T Consensus 39 ~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a-~~~~~sn~i~~l~a 114 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILASLYELVA-DSTDGSNLIDLLLA 114 (299)
T ss_pred chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHHHHHHHHH-hhccchhHHHHHHh
Confidence 555555566666766666644333221111 11223333445555555555555554444441 11111111222333
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH
Q 013398 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (444)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~ 318 (444)
.+-+...+++++|+....+...+ ...+.. -.++ .+..+.+-|.+..++.. +++.+..
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~l--------E~~Al~--VqI~-----------lk~~r~d~A~~~lk~mq-~ided~t- 171 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENL--------EAAALN--VQIL-----------LKMHRFDLAEKELKKMQ-QIDEDAT- 171 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchH--------HHHHHH--HHHH-----------HHHHHHHHHHHHHHHHH-ccchHHH-
Confidence 33344566777776665542221 111111 1111 12345666777777766 6655433
Q ss_pred HHHHHHHHHHH--c--CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 013398 319 ILYRLSLEYAE--Q--RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK 394 (444)
Q Consensus 319 a~~~lg~~~~~--~--g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l 394 (444)
+..||.++.. . +++.+|.-+|+..-..-|-.+ ...+.++.+...+|||++|...++.||..+| .+++.+.|+
T Consensus 172 -LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~-~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~--~dpetL~Nl 247 (299)
T KOG3081|consen 172 -LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTP-LLLNGQAVCHLQLGRYEEAESLLEEALDKDA--KDPETLANL 247 (299)
T ss_pred -HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCh-HHHccHHHHHHHhcCHHHHHHHHHHHHhccC--CCHHHHHHH
Confidence 3333333322 2 356677777777666333332 6666677777777777777777777777777 667777777
Q ss_pred HHHHHHhCCHHHHHHHH
Q 013398 395 AKVQLVQGQLKGAVETY 411 (444)
Q Consensus 395 a~~~~~~g~~~~A~~~~ 411 (444)
-.+-..+|...++.+-+
T Consensus 248 iv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERN 264 (299)
T ss_pred HHHHHHhCCChHHHHHH
Confidence 77777777766655544
No 180
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.57 E-value=1.2e-06 Score=86.64 Aligned_cols=115 Identities=18% Similarity=0.168 Sum_probs=96.2
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013398 243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR 322 (444)
Q Consensus 243 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~ 322 (444)
...+++++|+..+++..+..| + +...++.++... ++-.+|+..+.+++ ..+|.++..+..
T Consensus 180 ~~t~~~~~ai~lle~L~~~~p-e-------v~~~LA~v~l~~-----------~~E~~AI~ll~~aL-~~~p~d~~LL~~ 239 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDP-E-------VAVLLARVYLLM-----------NEEVEAIRLLNEAL-KENPQDSELLNL 239 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCC-c-------HHHHHHHHHHhc-----------CcHHHHHHHHHHHH-HhCCCCHHHHHH
Confidence 446788999999998887432 1 334455555432 34579999999999 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013398 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (444)
Q Consensus 323 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a 378 (444)
.+..+...++++.|+...++++.+.|++ ..+|..|+.+|...|++++|+..+...
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999998 599999999999999999999887643
No 181
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.56 E-value=1.1e-06 Score=71.17 Aligned_cols=88 Identities=15% Similarity=0.025 Sum_probs=57.1
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHccCHHHH
Q 013398 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARILSAQKRYEDA 371 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~~la~~l~~~g~~~eA 371 (444)
.|+.++|++.|.+++ .+-|..+.+++|.+.++.-+|+.++|++.+++|+++..+.. ..++...|.+|..+|+-+.|
T Consensus 56 ~g~Ld~AlE~F~qal-~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 56 AGDLDGALELFGQAL-CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred ccchHHHHHHHHHHH-HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 456666666666666 66666666666666666666666666666666666665431 13456666666666666666
Q ss_pred HHHHHHHHhhcC
Q 013398 372 ETILNAALDQTG 383 (444)
Q Consensus 372 ~~~~~~al~~~P 383 (444)
..-|+.|-++-.
T Consensus 135 R~DFe~AA~LGS 146 (175)
T KOG4555|consen 135 RADFEAAAQLGS 146 (175)
T ss_pred HHhHHHHHHhCC
Confidence 666666666654
No 182
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=2.3e-05 Score=71.45 Aligned_cols=197 Identities=11% Similarity=-0.006 Sum_probs=138.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHH-HHHH-HHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013398 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKE-RYHI-LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (444)
Q Consensus 163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~-~~~~-la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (444)
+...++..+...++.+.-+..+.+-+...-+... .+.- =|.++...|++++|++...... +.++..+.-.+
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI 146 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQI 146 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHH
Confidence 3344455555556666555555444443333333 4433 4778899999999999887743 44454444444
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013398 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (444)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~ 320 (444)
.+ +..+++-|....++..++..+..-.-.+.+|..+... .+...+|.-.|++.- +.-|..+..+
T Consensus 147 ~l-k~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g--------------gek~qdAfyifeE~s-~k~~~T~~ll 210 (299)
T KOG3081|consen 147 LL-KMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG--------------GEKIQDAFYIFEELS-EKTPPTPLLL 210 (299)
T ss_pred HH-HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc--------------chhhhhHHHHHHHHh-cccCCChHHH
Confidence 44 3578888888888888743221111123444444432 245789999999999 8888899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH-HHHHHHhhcC
Q 013398 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET-ILNAALDQTG 383 (444)
Q Consensus 321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~-~~~~al~~~P 383 (444)
+..+.++..+|++++|...++.+|.-+|+++ +.+.++-.+-..+|.-.++.. .+.+.....|
T Consensus 211 nG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp-etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 211 NGQAVCHLQLGRYEEAESLLEEALDKDAKDP-ETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999996 999999888888999888775 4455556677
No 183
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.53 E-value=1.4e-07 Score=71.52 Aligned_cols=67 Identities=22% Similarity=0.336 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhc---CCC--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013398 353 KGWLLMARILSAQKRYEDAETILNAALDQT---GKW--EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~---P~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
.++.++|.++..+|+|++|+.+|+++++.. ++. +-...+.++|.++..+|++++|++.|++++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 344444444444444444444444444321 100 1244555555555555555555555555555543
No 184
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.49 E-value=5.1e-07 Score=68.30 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---C-CCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013398 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE---G-GSN--LKGWLLMARILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P-~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~ 382 (444)
|+-+.+++++|.+|..+|++++|+.+|++++.+. + +++ +.++.++|.++..+|++++|+.++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5557889999999999999999999999999763 2 211 4678999999999999999999999999864
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.46 E-value=1.9e-05 Score=68.23 Aligned_cols=157 Identities=18% Similarity=0.045 Sum_probs=110.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCC
Q 013398 167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPD 246 (444)
Q Consensus 167 lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~ 246 (444)
++.+....=+++.......+.+...|.. .-.+.||..+.+.|++.||..+|++++. .+.-+++..++.+++..
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aq----- 134 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQ----- 134 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHH-----
Confidence 4444555556666666666666666644 4477899999999999999999999995 45555554333222211
Q ss_pred CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC--CHHHHHHHH
Q 013398 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLS 324 (444)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~--~~~a~~~lg 324 (444)
+- .+++.+|...+++.. +.+|. .|+....+|
T Consensus 135 ----------------------------fa------------------~~~~A~a~~tLe~l~-e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 135 ----------------------------FA------------------IQEFAAAQQTLEDLM-EYNPAFRSPDGHLLFA 167 (251)
T ss_pred ----------------------------Hh------------------hccHHHHHHHHHHHh-hcCCccCCCCchHHHH
Confidence 11 134566777777777 77764 466778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013398 325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (444)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al 379 (444)
.++..+|++.+|...|+.++.--|+. .+....+..+.++||.++|..-+....
T Consensus 168 R~laa~g~~a~Aesafe~a~~~ypg~--~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYYPGP--QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhCCCH--HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 88999999999999999999988883 777888888999998888776554443
No 186
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.46 E-value=4e-06 Score=70.06 Aligned_cols=107 Identities=13% Similarity=0.023 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC-cHHHHHH
Q 013398 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE-QGELLRT 393 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~-~~~~~~~ 393 (444)
+..++.-|....+.|+|++|++.|+....--|-.+ ..+.+.++.++++.|+|++|+..+++.++++|+.. -.-+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 45667777777777777777777777777666542 25667777777777777777777777777777321 1456667
Q ss_pred HHHHHHHhCC---------------HHHHHHHHHHHHHHHHhhhh
Q 013398 394 KAKVQLVQGQ---------------LKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 394 la~~~~~~g~---------------~~~A~~~~~~al~l~~~~~~ 423 (444)
+|.+...+.. ..+|...|+++++-+|+..-
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 7777777665 67777888888777775543
No 187
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.46 E-value=6e-07 Score=84.11 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=90.9
Q ss_pred HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013398 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~ 373 (444)
+.|.|+|||.+|.+++ ..+|.|+-.+.|.+.+|.+++++..|...+..|+.+|-.. ..+|...|..-..+|...||..
T Consensus 109 KQgKy~EAIDCYs~~i-a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAI-AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred hccchhHHHHHhhhhh-ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHHhhHHHHHH
Confidence 3467999999999999 9999999999999999999999999999999999999988 6999999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHH
Q 013398 374 ILNAALDQTGKWEQGELLRTKAKV 397 (444)
Q Consensus 374 ~~~~al~~~P~~~~~~~~~~la~~ 397 (444)
-++.+|++.| ++.++.-..+.+
T Consensus 187 D~E~vL~LEP--~~~ELkK~~a~i 208 (536)
T KOG4648|consen 187 DCETVLALEP--KNIELKKSLARI 208 (536)
T ss_pred hHHHHHhhCc--ccHHHHHHHHHh
Confidence 9999999999 776655544443
No 188
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.42 E-value=0.00012 Score=79.79 Aligned_cols=247 Identities=8% Similarity=-0.018 Sum_probs=189.7
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC-CCCCH----HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCC
Q 013398 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG-IINRK----ERYHILALCYYGAGEDLVALNLLRTLLSGSED 227 (444)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~-~p~~~----~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~ 227 (444)
.+..+|+..-.|...-.-....++.++|.+..++||.. ++... ..|..+=++...-|.-+.-.+.|++|. +.
T Consensus 1450 lvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc--qy- 1526 (1710)
T KOG1070|consen 1450 LVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC--QY- 1526 (1710)
T ss_pred HHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH--Hh-
Confidence 34567999999999888899999999999999999964 45443 455555555555576677789999999 32
Q ss_pred CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHH
Q 013398 228 PKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVS 307 (444)
Q Consensus 228 P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~ 307 (444)
-+-..+|..+.+++ ....++++|.+.++..++.+... ...|...|..+..+ ++-++|...+.+
T Consensus 1527 cd~~~V~~~L~~iy-~k~ek~~~A~ell~~m~KKF~q~-----~~vW~~y~~fLl~~-----------ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIY-EKSEKNDEADELLRLMLKKFGQT-----RKVWIMYADFLLRQ-----------NEAEAARELLKR 1589 (1710)
T ss_pred cchHHHHHHHHHHH-HHhhcchhHHHHHHHHHHHhcch-----hhHHHHHHHHHhcc-----------cHHHHHHHHHHH
Confidence 22234566677775 55688999999999999987632 35788888887654 345788999999
Q ss_pred HHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc--C
Q 013398 308 AARSTNMR--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT--G 383 (444)
Q Consensus 308 al~~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~--P 383 (444)
|+ +--|. +.+..-.-+.+.++.|+.+.+...|+-.+.-.|.- .+.|+-+...-.++|..+.+...|++++.+. |
T Consensus 1590 AL-~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1590 AL-KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HH-hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 99 89898 77888889999999999999999999999999998 5999999999999999999999999999764 5
Q ss_pred CCCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhhhh
Q 013398 384 KWEQGELLRTKAKVQLVQ-GQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 384 ~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~l~~~~~~ 423 (444)
.....+|.+=.-|.+. |+-......=.+|.+......+
T Consensus 1668 --kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~~s 1706 (1710)
T KOG1070|consen 1668 --KKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESIKS 1706 (1710)
T ss_pred --hHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHhhh
Confidence 4445455444444444 4444444444667776665444
No 189
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.42 E-value=7.3e-05 Score=70.91 Aligned_cols=207 Identities=11% Similarity=-0.006 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-----
Q 013398 197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL------PALLIASKICGEYPDLAEEGATFASRALECLGDG----- 265 (444)
Q Consensus 197 ~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~------~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~----- 265 (444)
++..+|.++..++.++++++.|+.|+ +...++. .++..++.+ +....++++|+-+..++.++...-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~--~~A~~~~D~~LElqvcv~Lgsl-f~~l~D~~Kal~f~~kA~~lv~s~~l~d~ 200 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKAL--RYAHNNDDAMLELQVCVSLGSL-FAQLKDYEKALFFPCKAAELVNSYGLKDW 200 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHH--HHhhccCCceeeeehhhhHHHH-HHHHHhhhHHhhhhHhHHHHHHhcCcCch
Confidence 33445555555555555555555555 2222211 122223322 233445555555555555543211
Q ss_pred cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 013398 266 CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN------MRDLSILYRLSLEYAEQRKLNAAHYY 339 (444)
Q Consensus 266 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~ 339 (444)
..-+...+.+.+++++..+| +.-.|.++-+++. ++. |-.+..+.-+|.+|...|+.+.|...
T Consensus 201 ~~kyr~~~lyhmaValR~~G-----------~LgdA~e~C~Ea~-klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~r 268 (518)
T KOG1941|consen 201 SLKYRAMSLYHMAVALRLLG-----------RLGDAMECCEEAM-KLALQHGDRALQARCLLCFADIYRSRGDLERAFRR 268 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhc-----------ccccHHHHHHHHH-HHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHH
Confidence 11233456677777776654 4555666666655 432 22344557889999999999999999
Q ss_pred HHHHHhhcCCC-----ChHHHHHHHHHHHHccCHHH-----HHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHH
Q 013398 340 AKMLLKLEGGS-----NLKGWLLMARILSAQKRYED-----AETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLK 405 (444)
Q Consensus 340 ~~~al~l~P~~-----~~~~~~~la~~l~~~g~~~e-----A~~~~~~al~~~P~~----~~~~~~~~la~~~~~~g~~~ 405 (444)
|+.|...-..- .+.++...+.++....-..+ |++.-.+++++.... -....+..++.+|..+|.-+
T Consensus 269 Ye~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d 348 (518)
T KOG1941|consen 269 YEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQD 348 (518)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchh
Confidence 99997654321 02455556666655555555 888888888876410 12356778899999998888
Q ss_pred HHHHHHHHHHHHH
Q 013398 406 GAVETYTHLLAAL 418 (444)
Q Consensus 406 ~A~~~~~~al~l~ 418 (444)
+=-+.+.++-+..
T Consensus 349 ~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 349 ELRAHVVRAHECV 361 (518)
T ss_pred HHHHHHHHHHHHH
Confidence 8777777765433
No 190
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.41 E-value=4.1e-06 Score=77.12 Aligned_cols=105 Identities=18% Similarity=0.166 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHH
Q 013398 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAK 396 (444)
Q Consensus 320 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-~~~~~~~~la~ 396 (444)
.|+.|.-++..|+|.+|...|...+..-|++. ..+++-||.+++.+|+|++|...|..+++..|+. .-+++++-+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 67777777777888888888888888777752 2567777888888888888888888888777731 23577788888
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013398 397 VQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 397 ~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
++..+|+.++|...|+++++-+|+-.-+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 8888888888888888887777754433
No 191
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.41 E-value=1.2e-05 Score=76.15 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---------hHHHHHHHH
Q 013398 296 TRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---------LKGWLLMAR 360 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---------~~~~~~la~ 360 (444)
+.++++++.|++|+ .+..++.+ +...||-.+.+.+++++|+.+..+|.++-.... ..+++.++.
T Consensus 136 s~fq~~Lesfe~A~-~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 136 SVFQKALESFEKAL-RYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHH-HHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 45788888899888 76554443 457888889999999999999999888764321 134567788
Q ss_pred HHHHccCHHHHHHHHHHHHhhcCC----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 361 ILSAQKRYEDAETILNAALDQTGK----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 361 ~l~~~g~~~eA~~~~~~al~~~P~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
.+..+|+.-+|.+++++|.++.-. .-...-..-+|+++...|+.+.|+.-|+.+......-.
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g 280 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG 280 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh
Confidence 888899999999999988876410 02344556678899999999999999999887665433
No 192
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.40 E-value=3.7e-06 Score=72.50 Aligned_cols=111 Identities=10% Similarity=-0.022 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH---HHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHH
Q 013398 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV---ALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGAT 253 (444)
Q Consensus 177 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~---A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~ 253 (444)
|+.|.+.++.....+|.+++.+++-|.+|..+.++.. +..+ +++|+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~m------------------------------iedAis 56 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKM------------------------------IEDAIS 56 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHH------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHH------------------------------HHHHHH
Confidence 4566666777777777777777777777666544321 1111 224444
Q ss_pred HHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013398 254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL 323 (444)
Q Consensus 254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l 323 (444)
-|+.+|.+.|.. ..+++.+|.+|..++...+........+++|..+|++|+ ..+|+|....-.|
T Consensus 57 K~eeAL~I~P~~-----hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv-~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 57 KFEEALKINPNK-----HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAV-DEDPNNELYRKSL 120 (186)
T ss_dssp HHHHHHHH-TT------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HH-TT-HHHHHHH
T ss_pred HHHHHHhcCCch-----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH-hcCCCcHHHHHHH
Confidence 455555543322 345666666666655433333334466899999999999 9999997544433
No 193
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.39 E-value=0.00025 Score=74.43 Aligned_cols=232 Identities=13% Similarity=0.031 Sum_probs=154.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHH
Q 013398 135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVA 214 (444)
Q Consensus 135 ~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A 214 (444)
.+++.+|.... +.++++.|+.+-+....|..+.++|+.++|..+++..-..-+++....-.+-.+|.++|++++|
T Consensus 22 ~~qfkkal~~~-----~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 22 SSQFKKALAKL-----GKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hHHHHHHHHHH-----HHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 45778888764 6678999999999999999999999999999999888777788888888999999999999999
Q ss_pred HHHHHHhhcCCCCCCChHHH--HHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhch
Q 013398 215 LNLLRTLLSGSEDPKCLPAL--LIASKICG-EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD 291 (444)
Q Consensus 215 ~~~~~~al~~~~~P~~~~a~--~~~~~~~~-~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~ 291 (444)
..+|++++ ..+|+ .+.. ++++.+-- ....+-+.|+..|+ ..|.++ ..-|....... ++..+...
T Consensus 97 ~~~Ye~~~--~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK----~~pk~~----yyfWsV~Slil--qs~~~~~~ 163 (932)
T KOG2053|consen 97 VHLYERAN--QKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYK----NFPKRA----YYFWSVISLIL--QSIFSENE 163 (932)
T ss_pred HHHHHHHH--hhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCccc----chHHHHHHHHH--HhccCCcc
Confidence 99999999 89998 3322 22222210 00112234555554 233332 11233332222 22221111
Q ss_pred HHHHhhHHHHHHHHHHHHHhhC-CCCHHHHHHH-HHHHHHcCCHHHHHHHHH-HHHhhcCCCChHHH-HHHHHHHHHccC
Q 013398 292 FDRATRQAKALQALVSAARSTN-MRDLSILYRL-SLEYAEQRKLNAAHYYAK-MLLKLEGGSNLKGW-LLMARILSAQKR 367 (444)
Q Consensus 292 ~~~~~~~~eA~~~~~~al~~~~-P~~~~a~~~l-g~~~~~~g~~~~A~~~~~-~al~l~P~~~~~~~-~~la~~l~~~g~ 367 (444)
....--..-|..++++.+ +.. +-...+-..| -.++..+|++++|...+. ...+..+..+ ... +.....+...++
T Consensus 164 ~~~~i~l~LA~~m~~~~l-~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~-~~l~~~~~dllk~l~~ 241 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLL-EKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSAN-LYLENKKLDLLKLLNR 241 (932)
T ss_pred cccchhHHHHHHHHHHHh-ccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHhcC
Confidence 001112356778888888 666 4333322222 346677899999999994 4444455543 444 345667778899
Q ss_pred HHHHHHHHHHHHhhcCCCCcH
Q 013398 368 YEDAETILNAALDQTGKWEQG 388 (444)
Q Consensus 368 ~~eA~~~~~~al~~~P~~~~~ 388 (444)
+.+-.+...+++...| |+.
T Consensus 242 w~~l~~l~~~Ll~k~~--Ddy 260 (932)
T KOG2053|consen 242 WQELFELSSRLLEKGN--DDY 260 (932)
T ss_pred hHHHHHHHHHHHHhCC--cch
Confidence 9999999999999999 763
No 194
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=5.5e-06 Score=72.25 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=87.8
Q ss_pred HHhhHHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCH
Q 013398 294 RATRQAKALQALVSAARSTNMRDLS-----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY 368 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P~~~~-----a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~ 368 (444)
..|.+++|..-|..|+ .+-|.-+. .+.|.|.++.+++..+.|+..+.+|++|+|.+ ..++...+.+|.+..+|
T Consensus 107 ~ngdyeeA~skY~~Al-e~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEAL-ESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAYEKMEKY 184 (271)
T ss_pred hcccHHHHHHHHHHHH-HhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHHHhhhhH
Confidence 3578999999999999 99998764 45688999999999999999999999999999 49999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013398 369 EDAETILNAALDQTGKWEQGELLRTKAKV 397 (444)
Q Consensus 369 ~eA~~~~~~al~~~P~~~~~~~~~~la~~ 397 (444)
++|+.-|.+.++.+| ..-++.-....+
T Consensus 185 eealeDyKki~E~dP--s~~ear~~i~rl 211 (271)
T KOG4234|consen 185 EEALEDYKKILESDP--SRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHHhCc--chHHHHHHHHhc
Confidence 999999999999999 555555544443
No 195
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.37 E-value=4.2e-06 Score=67.92 Aligned_cols=97 Identities=19% Similarity=0.097 Sum_probs=85.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC--CcHHHHHHHHHHHH
Q 013398 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW--EQGELLRTKAKVQL 399 (444)
Q Consensus 322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~--~~~~~~~~la~~~~ 399 (444)
.-|.++.+.|++++|++.|.+++.+-|+.+ .+|++.+..+.-+|+.++|+.-+++|+++..+. .--.++..+|.++.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~ra-SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERA-SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccch-HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 346788999999999999999999999995 999999999999999999999999999997510 12467889999999
Q ss_pred HhCCHHHHHHHHHHHHHHHH
Q 013398 400 VQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 400 ~~g~~~~A~~~~~~al~l~~ 419 (444)
.+|+.+.|...|+.+-++--
T Consensus 127 l~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HhCchHHHHHhHHHHHHhCC
Confidence 99999999999999877643
No 196
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.35 E-value=8.6e-06 Score=75.03 Aligned_cols=96 Identities=16% Similarity=0.056 Sum_probs=86.3
Q ss_pred HhhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHH
Q 013398 295 ATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYE 369 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~ 369 (444)
.|+|.+|...|..-+ +.-|++ +.++|.||.+++.+|++++|...|..+++-.|+++ .++++.+|.++..+|+.+
T Consensus 154 sgdy~~A~~~F~~fi-~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 154 SGDYAEAEQAFQAFI-KKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred cCCHHHHHHHHHHHH-HcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 467999999999999 999987 57999999999999999999999999999998873 278999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHH
Q 013398 370 DAETILNAALDQTGKWEQGELLRT 393 (444)
Q Consensus 370 eA~~~~~~al~~~P~~~~~~~~~~ 393 (444)
+|-..|+++++..| +...+...
T Consensus 233 ~A~atl~qv~k~YP--~t~aA~~A 254 (262)
T COG1729 233 EACATLQQVIKRYP--GTDAAKLA 254 (262)
T ss_pred HHHHHHHHHHHHCC--CCHHHHHH
Confidence 99999999999999 66554443
No 197
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.34 E-value=9.2e-06 Score=67.91 Aligned_cols=92 Identities=10% Similarity=0.025 Sum_probs=81.6
Q ss_pred HHhhHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh--HHHHHHHHHHHHccC-
Q 013398 294 RATRQAKALQALVSAARSTNMRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARILSAQKR- 367 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--~~~~~la~~l~~~g~- 367 (444)
+.|++++|++.|+.+. ..-|..+ .+.+.||.+|...|++++|+..+++.++++|.|+- -+++..|.+.+.+..
T Consensus 22 ~~~~Y~~A~~~le~L~-~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~ 100 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALD-TRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG 100 (142)
T ss_pred HhCCHHHHHHHHHHHH-hcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence 3578999999999999 8888764 68899999999999999999999999999999851 478889999998877
Q ss_pred --------------HHHHHHHHHHHHhhcCCCCcH
Q 013398 368 --------------YEDAETILNAALDQTGKWEQG 388 (444)
Q Consensus 368 --------------~~eA~~~~~~al~~~P~~~~~ 388 (444)
..+|...|++.+...| ++.
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP--~S~ 133 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYP--NSE 133 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHHCc--CCh
Confidence 8899999999999999 553
No 198
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.32 E-value=0.00016 Score=66.25 Aligned_cols=72 Identities=21% Similarity=0.137 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHH
Q 013398 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a 233 (444)
.++.++.-|......|++++|+..|+++....|.+ ..+...++-++++.+++++|+...++=+ ++.|+++.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi--~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI--RLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCCCCCh
Confidence 45678888888889999999999999888776664 4678888999999999999999999999 888887654
No 199
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.8e-06 Score=77.16 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=84.2
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013398 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~ 374 (444)
..+++.|+.+|.+++ .++|..+..+-|.+.++.+.++++.....+++|+.++|+. +.+++.+|..+.....|++|+..
T Consensus 23 ~k~y~~ai~~y~raI-~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~-vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAI-CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL-VKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHH-hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH-HHHHHHHHHHHHhhccccHHHHH
Confidence 457899999999999 9999999999999999999999999999999999999998 69999999999999999999999
Q ss_pred HHHHHhhc---CCCCcHHHHHHHHHH
Q 013398 375 LNAALDQT---GKWEQGELLRTKAKV 397 (444)
Q Consensus 375 ~~~al~~~---P~~~~~~~~~~la~~ 397 (444)
+.+|..+. |-+.-..++..+-.+
T Consensus 101 Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 101 LQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 99996442 310224555555444
No 200
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.27 E-value=8.4e-07 Score=55.41 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=22.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 013398 305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAH 337 (444)
Q Consensus 305 ~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~ 337 (444)
|++++ +++|+|+.+|++||.+|...|++++|+
T Consensus 2 y~kAi-e~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAI-ELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHH-HHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56677 777777777777777777777777665
No 201
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.27 E-value=1.6e-06 Score=57.78 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 013398 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~ 360 (444)
|.+++.+|.+|.++|++++|++.|+++++.+|+++ .+|..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~-~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP-EAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH-HHHHHhhh
Confidence 34566677777777777777777777777777763 66666653
No 202
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.27 E-value=0.00027 Score=64.75 Aligned_cols=190 Identities=14% Similarity=0.002 Sum_probs=124.0
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013398 193 NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL---PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (444)
Q Consensus 193 ~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~---~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~ 269 (444)
..+..||+-|...++.|++++|+..|+... ...|..+ .+.+.++...+. .+++++|+...++.+...|.++.
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~--~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n-- 106 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALD--SRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPN-- 106 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCC--
Confidence 457889999999999999999999999999 8888865 456666666554 68999999999999998887654
Q ss_pred hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013398 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
..-+++..|.++...-.....+ .....+|+..|++.+ +.-|++.-+-.....+ ..++..+
T Consensus 107 ~dY~~YlkgLs~~~~i~~~~rD---q~~~~~A~~~f~~~i-~ryPnS~Ya~dA~~~i-----------~~~~d~L----- 166 (254)
T COG4105 107 ADYAYYLKGLSYFFQIDDVTRD---QSAARAAFAAFKELV-QRYPNSRYAPDAKARI-----------VKLNDAL----- 166 (254)
T ss_pred hhHHHHHHHHHHhccCCccccC---HHHHHHHHHHHHHHH-HHCCCCcchhhHHHHH-----------HHHHHHH-----
Confidence 2467888888866543222111 123468999999999 9999986432211111 0111110
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHhCCHHHHHH
Q 013398 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAKVQLVQGQLKGAVE 409 (444)
Q Consensus 350 ~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-~~~~~~~~la~~~~~~g~~~~A~~ 409 (444)
+.-=+..|..|.+.|.+..|+.-++..++..|+. .-.+++..+..++..+|-.++|-.
T Consensus 167 --A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 167 --AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred --HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH
Confidence 1222335556666666666666666666655520 124555556666666666665543
No 203
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.27 E-value=1.2e-06 Score=58.37 Aligned_cols=42 Identities=17% Similarity=0.099 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 013398 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILAL 203 (444)
Q Consensus 162 ~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 203 (444)
+++..+|.+|...|++++|++.|+++++.+|+++++|..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 455566666666666666666666666666666666665553
No 204
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.19 E-value=8.3e-07 Score=55.44 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=29.7
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHH
Q 013398 183 QIEELLPGIINRKERYHILALCYYGAGEDLVAL 215 (444)
Q Consensus 183 ~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~ 215 (444)
+|+++|+++|+++.+|++||.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478899999999999999999999999999886
No 205
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.18 E-value=0.00016 Score=71.61 Aligned_cols=189 Identities=17% Similarity=0.113 Sum_probs=123.7
Q ss_pred HHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhh
Q 013398 205 YYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (444)
Q Consensus 205 l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 284 (444)
-.+..+.+.-++.-++|| .++|+...++..++. ....-..||..+|+++++.- -..+|....
T Consensus 178 AWRERnp~aRIkaA~eAL--ei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAg-----------E~~lg~s~~-- 239 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEAL--EINPDCADAYILLAE---EEASTIVEAEELLRQAVKAG-----------EASLGKSQF-- 239 (539)
T ss_pred HHhcCCHHHHHHHHHHHH--HhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHH-----------HHhhchhhh--
Confidence 345567778888889999 899999998876643 23445789999999998831 122222111
Q ss_pred hhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-CChHHHHHHHHH
Q 013398 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDL--SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-SNLKGWLLMARI 361 (444)
Q Consensus 285 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~~la~~ 361 (444)
.+....+-+.. ...+.++ -+...||.+..++|+.+||++.++..++.+|. +....+.+|-.+
T Consensus 240 --------------~~~~g~~~e~~-~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~ 304 (539)
T PF04184_consen 240 --------------LQHHGHFWEAW-HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA 304 (539)
T ss_pred --------------hhcccchhhhh-hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH
Confidence 11111122222 2233333 34467888888999999999999999888776 234678888888
Q ss_pred HHHccCHHHHHHHHHHHHhh-cCCCCcHHHHHHHHHHHHHh-CC---------------HHHHHHHHHHHHHHHHhhhhh
Q 013398 362 LSAQKRYEDAETILNAALDQ-TGKWEQGELLRTKAKVQLVQ-GQ---------------LKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 362 l~~~g~~~eA~~~~~~al~~-~P~~~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~al~l~~~~~~~ 424 (444)
+...++|.++...+.+-=+. -| ..+.+.|..+.+..+. |+ ...|+++.++|++.+|...+=
T Consensus 305 LLelq~Yad~q~lL~kYdDi~lp--kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 305 LLELQAYADVQALLAKYDDISLP--KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHhcCCHHHHHHHHHHhccccCC--chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 99999999988888775333 25 5666666666654331 11 134678889999988877764
Q ss_pred ccCc
Q 013398 425 FSSD 428 (444)
Q Consensus 425 ~~~~ 428 (444)
....
T Consensus 383 LLe~ 386 (539)
T PF04184_consen 383 LLEM 386 (539)
T ss_pred hhcc
Confidence 3333
No 206
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=0.001 Score=69.35 Aligned_cols=191 Identities=14% Similarity=0.028 Sum_probs=115.0
Q ss_pred HHHHHHHhhhhcccchHHHHHHHH--------HHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHH
Q 013398 11 EAIFLKAKCLQGLGRFKEAAQSCK--------VILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRET 82 (444)
Q Consensus 11 ~~~~~~g~~~~~~g~~~~A~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA 82 (444)
..|-+.+...-+..|++-|--..- +++...++ .++..+ ...+.+..+.|.+++|
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-----~~~e~e-------------akvAvLAieLgMlEeA 819 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-----NGEEDE-------------AKVAVLAIELGMLEEA 819 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-----CCcchh-------------hHHHHHHHHHhhHHHH
Confidence 357777888888888776632221 23333211 122111 1223456789999999
Q ss_pred HHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHH
Q 013398 83 IMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPS 162 (444)
Q Consensus 83 ~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~ 162 (444)
+..|++.=+. | +.++ +|-.+|.+++|.++... .+. -.-..
T Consensus 820 ~~lYr~ckR~----D------LlNK-----------------------lyQs~g~w~eA~eiAE~--~DR-----iHLr~ 859 (1416)
T KOG3617|consen 820 LILYRQCKRY----D------LLNK-----------------------LYQSQGMWSEAFEIAET--KDR-----IHLRN 859 (1416)
T ss_pred HHHHHHHHHH----H------HHHH-----------------------HHHhcccHHHHHHHHhh--ccc-----eehhh
Confidence 9999998664 3 1111 23335677787764210 011 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh----------cCCCCCC----------HHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013398 163 ILDHLSFAFSIAGDLSSLATQIEEL----------LPGIINR----------KERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 163 ~~~~lg~~l~~~g~~~~A~~~~~~a----------l~~~p~~----------~~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
.|++.+.-+...++.+.|+++|+++ |.-+|.. +..|---|.-+...|+.+.|+..|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 6777777777888888888888776 3334433 3344456777778888888888887754
Q ss_pred cC-------------------CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013398 223 SG-------------------SEDPKCLPALLIASKICGEYPDLAEEGATFASRALE 260 (444)
Q Consensus 223 ~~-------------------~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~ 260 (444)
.. .....+..+.+.+++. |...|++.+|+.+|.|+-.
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~-YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARM-YENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHH-hhhhHHHHHHHHHHHHHHH
Confidence 10 1223345566667776 4677889999999887644
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.16 E-value=0.0084 Score=57.89 Aligned_cols=256 Identities=16% Similarity=0.074 Sum_probs=180.0
Q ss_pred HHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHH
Q 013398 71 ELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLR 150 (444)
Q Consensus 71 ~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~ 150 (444)
..-+-.|++++|-.-|+-++. ||+... + .+-.+++.. ...|..+.|+..-
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~-----dPEtRl-l--GLRgLyleA-----------------qr~GareaAr~yA----- 177 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLD-----DPETRL-L--GLRGLYLEA-----------------QRLGAREAARHYA----- 177 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhc-----ChHHHH-H--hHHHHHHHH-----------------HhcccHHHHHHHH-----
Confidence 455679999999999999998 665421 0 011111111 1245566666653
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC---CCCCHH-----HHHHHHHHHHHCCCchHHHHHHHHhh
Q 013398 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG---IINRKE-----RYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~---~p~~~~-----~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
+.+-.+.|.-++++.-.-...+..|+++.|+...+...+. .++-.+ .....+..+.. -+...|...-.+++
T Consensus 178 e~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~ 256 (531)
T COG3898 178 ERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEAN 256 (531)
T ss_pred HHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHh
Confidence 3445677999999998888999999999999988766533 333222 12222333333 35788999999999
Q ss_pred cCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHH
Q 013398 223 SGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKAL 302 (444)
Q Consensus 223 ~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~ 302 (444)
++.|+...+-+..+..++. .|+..++-..++.+-+. .|+++ ....|.. .+.|+.. .. + +
T Consensus 257 --KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~-ePHP~--ia~lY~~-----ar~gdta---~d---R----l 315 (531)
T COG3898 257 --KLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKA-EPHPD--IALLYVR-----ARSGDTA---LD---R----L 315 (531)
T ss_pred --hcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhc-CCChH--HHHHHHH-----hcCCCcH---HH---H----H
Confidence 8999999888877777654 67888999999999884 45542 1111111 1111110 01 1 1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-cCHHHHHHHHHHHHhh
Q 013398 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-KRYEDAETILNAALDQ 381 (444)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~-g~~~eA~~~~~~al~~ 381 (444)
+-.++.. .+.|+|.+..+..+..-...|++..|...-+.+..+.|.. .++.+|+.|-... |+-.+...++-++++-
T Consensus 316 kRa~~L~-slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre--s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 316 KRAKKLE-SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE--SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHH-hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh--hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 2234455 7899999999999999999999999999999999999984 8899999998777 9999999999999964
No 208
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.13 E-value=0.0007 Score=71.20 Aligned_cols=228 Identities=17% Similarity=0.081 Sum_probs=153.2
Q ss_pred HhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHH
Q 013398 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEG 251 (444)
Q Consensus 172 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA 251 (444)
...+++.+|..-..+.++..|+.+-+..--|.++.++|+.++|..+++..- ...|++...+- ....||+..++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~--~~~~~D~~tLq-~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALY--GLKGTDDLTLQ-FLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhc--cCCCCchHHHH-HHHHHHHHHhhhhHH
Confidence 346889999999999999999999999999999999999999997776655 56666554433 345678999999999
Q ss_pred HHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHc
Q 013398 252 ATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR-LSLEYAEQ 330 (444)
Q Consensus 252 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~-lg~~~~~~ 330 (444)
..+|+++++..|. .+ -.+.+=++|.+.+.+ ..+...|++.|+ .-|.++-.+.+ ...++...
T Consensus 97 ~~~Ye~~~~~~P~-ee-----ll~~lFmayvR~~~y-------k~qQkaa~~LyK-----~~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EE-----LLYHLFMAYVREKSY-------KKQQKAALQLYK-----NFPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHhhCCc-HH-----HHHHHHHHHHHHHHH-------HHHHHHHHHHHH-----hCCcccchHHHHHHHHHHhc
Confidence 9999999997765 21 122223344333221 123345666664 45777754444 44444433
Q ss_pred CC---------HHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHH-hhcCCCCcHHHHHHHHHHHH
Q 013398 331 RK---------LNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDAETILNAAL-DQTGKWEQGELLRTKAKVQL 399 (444)
Q Consensus 331 g~---------~~~A~~~~~~al~l~-P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al-~~~P~~~~~~~~~~la~~~~ 399 (444)
.. ..-|.+.+++.++.. +-....=....-.++..+|++++|..++..-+ +..++ .+...-......+.
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~-~~~~l~~~~~dllk 237 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTS-ANLYLENKKLDLLK 237 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHH
Confidence 22 234777888888877 43321222334567888999999999994433 34441 44444445566777
Q ss_pred HhCCHHHHHHHHHHHHHHHHhh
Q 013398 400 VQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 400 ~~g~~~~A~~~~~~al~l~~~~ 421 (444)
..+++++=.+...++++-.+++
T Consensus 238 ~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 238 LLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HhcChHHHHHHHHHHHHhCCcc
Confidence 7777777777777777766665
No 209
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1e-05 Score=72.53 Aligned_cols=103 Identities=14% Similarity=0.005 Sum_probs=94.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013398 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (444)
Q Consensus 323 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g 402 (444)
-|.-+...++|..|+..|.+|+.++|..+ ..|.+.+.++++..+++.......+|+++.| +....++.+|..+....
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~-~Y~tnralchlk~~~~~~v~~dcrralql~~--N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVA-SYYTNRALCHLKLKHWEPVEEDCRRALQLDP--NLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcc-hhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh--HHHHHHHHHHHHHHhhc
Confidence 35566777899999999999999999984 9999999999999999999999999999999 89999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhccCc
Q 013398 403 QLKGAVETYTHLLAALQVQTKTFSSD 428 (444)
Q Consensus 403 ~~~~A~~~~~~al~l~~~~~~~~~~~ 428 (444)
.+++|+..+.++.++...+.-+.+-+
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~d 118 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDD 118 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcch
Confidence 99999999999999988777666554
No 210
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.07 E-value=0.00015 Score=69.14 Aligned_cols=125 Identities=11% Similarity=0.047 Sum_probs=105.6
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013398 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~ 373 (444)
.+..++|...|++|. +..+-+..+|...|.+-.. .++.+.|.+.|+++++.-|.+ ...|......+...|+.+.|..
T Consensus 14 ~~g~~~aR~vF~~a~-~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~~~~d~~~aR~ 91 (280)
T PF05843_consen 14 TEGIEAARKVFKRAR-KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLIKLNDINNARA 91 (280)
T ss_dssp HHHHHHHHHHHHHHH-CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTT-HHHHHH
T ss_pred hCChHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHhCcHHHHHH
Confidence 445789999999999 8888899999999999777 566666999999999999999 5999999999999999999999
Q ss_pred HHHHHHhhcCCCC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013398 374 ILNAALDQTGKWE-QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 374 ~~~~al~~~P~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
.|++++..-|... ...+|..........|+.+.....++++.++.|+.
T Consensus 92 lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 92 LFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999998877211 23688888999999999999999999999998873
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.00066 Score=62.01 Aligned_cols=127 Identities=16% Similarity=0.116 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hcCC-CChHHHHHHHHHHHHccCHH
Q 013398 296 TRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK----LEGG-SNLKGWLLMARILSAQKRYE 369 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~-~~~~~~~~la~~l~~~g~~~ 369 (444)
+.|.-.+.++.+++ ..+ |.+|...-.||.+-.+.|+.+.|..+|++.-+ ++.- +......+.+.++..+++|.
T Consensus 191 kEy~iS~d~~~~vi-~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVI-KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred hhhhhhHHHHHHHH-HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 35667888999999 777 78888888999999999999999999995543 3321 11256677888888899999
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013398 370 DAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (444)
Q Consensus 370 eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 425 (444)
+|...+++.+..+| .++.+-.++|.++.-+|+..+|++..+.++.+.|.+.-+.
T Consensus 270 ~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 270 EAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 99999999999999 8889999999999999999999999999998888765543
No 212
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.04 E-value=8.1e-06 Score=50.89 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013398 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46666777777777777777777777777665
No 213
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=0.00024 Score=69.92 Aligned_cols=107 Identities=14% Similarity=0.063 Sum_probs=83.1
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHhhCC------C--CHHHHHHHHHHHHhcCCHHHHHHHHHhhcC---------C---
Q 013398 131 SFVPRNNIEEAILLLMILLRKVALKRIE------W--DPSILDHLSFAFSIAGDLSSLATQIEELLP---------G--- 190 (444)
Q Consensus 131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p------~--~~~~~~~lg~~l~~~g~~~~A~~~~~~al~---------~--- 190 (444)
++...|++..|..+++.. -+...| . .--+|+++|-++.+.|.|..++..|.+|++ +
T Consensus 249 ~eY~~gn~~kA~KlL~~s----ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~ 324 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVS----NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPA 324 (696)
T ss_pred HHHHhcchHHHHHHHHhc----ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 445578888888877433 112222 2 223678999999999999999999999985 1
Q ss_pred ------CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhc
Q 013398 191 ------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243 (444)
Q Consensus 191 ------~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~ 243 (444)
....-+..|+.|..|...||+-.|.++|.+++ +..-.+|..|+.++..|..
T Consensus 325 ~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av--~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 325 KTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV--HVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred cceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH--HHHhcCcHHHHHHHHHHHH
Confidence 12356889999999999999999999999999 7888888899888877753
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.99 E-value=0.0017 Score=63.42 Aligned_cols=177 Identities=16% Similarity=0.079 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHH---CCCchHHHHHHHHhhcCCCCCCChH
Q 013398 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPG----IINRKERYHILALCYYG---AGEDLVALNLLRTLLSGSEDPKCLP 232 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~---~g~~~~A~~~~~~al~~~~~P~~~~ 232 (444)
++++..++-..|....+|+.=+...+..-.+ -++.+...+.+|.++.+ .|+.++|+..+..++. ...+.+++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChH
Confidence 4566778888899999999999888887776 56678889999999999 9999999999999663 56667777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh
Q 013398 233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST 312 (444)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~ 312 (444)
.+-..|+++-. ..++ ....+ ....++|+..|+++- ++
T Consensus 219 ~~gL~GRIyKD-------------~~~~-s~~~d----------------------------~~~ldkAi~~Y~kgF-e~ 255 (374)
T PF13281_consen 219 TLGLLGRIYKD-------------LFLE-SNFTD----------------------------RESLDKAIEWYRKGF-EI 255 (374)
T ss_pred HHHHHHHHHHH-------------HHHH-cCccc----------------------------hHHHHHHHHHHHHHH-cC
Confidence 77767766421 0111 00000 123688999999999 99
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh----------cCCCChHHHH--HHHHHHHHccCHHHHHHHHHHHH
Q 013398 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL-KL----------EGGSNLKGWL--LMARILSAQKRYEDAETILNAAL 379 (444)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l----------~P~~~~~~~~--~la~~l~~~g~~~eA~~~~~~al 379 (444)
+|+.. .-.|++.++...|...+.....++.. .+ .+. ...|. .++.+..-.|++++|+.++++++
T Consensus 256 ~~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~--~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 256 EPDYY-SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM--QDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred Ccccc-chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 96543 34455666666665443332222222 11 122 13443 45556666799999999999999
Q ss_pred hhcC
Q 013398 380 DQTG 383 (444)
Q Consensus 380 ~~~P 383 (444)
...|
T Consensus 333 ~l~~ 336 (374)
T PF13281_consen 333 KLKP 336 (374)
T ss_pred hcCC
Confidence 9988
No 215
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.99 E-value=1.6e-05 Score=49.46 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013398 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
+.+|+.+|.++..+|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3566667777777777777777777777777653
No 216
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.91 E-value=0.00065 Score=67.48 Aligned_cols=217 Identities=14% Similarity=0.011 Sum_probs=136.9
Q ss_pred hcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHH
Q 013398 173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGA 252 (444)
Q Consensus 173 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~ 252 (444)
+..+++.-++.-.+||+++|+.+++|.-||.- ...-..+|+..|++++ +....... .... ....|..
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAv--kAgE~~lg----~s~~-~~~~g~~---- 246 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAV--KAGEASLG----KSQF-LQHHGHF---- 246 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHH--HHHHHhhc----hhhh-hhcccch----
Confidence 45677888888899999999999999877653 2345688999999999 33222110 0000 0011111
Q ss_pred HHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc
Q 013398 253 TFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQ 330 (444)
Q Consensus 253 ~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~--~~~a~~~lg~~~~~~ 330 (444)
-..+. ..+......+...+++|..+. |+.+||++.|+..+ +..|. +..++++|-.++.++
T Consensus 247 ---~e~~~---~Rdt~~~~y~KrRLAmCarkl-----------Gr~~EAIk~~rdLl-ke~p~~~~l~IrenLie~LLel 308 (539)
T PF04184_consen 247 ---WEAWH---RRDTNVLVYAKRRLAMCARKL-----------GRLREAIKMFRDLL-KEFPNLDNLNIRENLIEALLEL 308 (539)
T ss_pred ---hhhhh---ccccchhhhhHHHHHHHHHHh-----------CChHHHHHHHHHHH-hhCCccchhhHHHHHHHHHHhc
Confidence 00110 001111234556678887654 67899999999999 87775 466899999999999
Q ss_pred CCHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHc-cC---------------HHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013398 331 RKLNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQ-KR---------------YEDAETILNAALDQTGKWEQGELLRT 393 (444)
Q Consensus 331 g~~~~A~~~~~~al~l~-P~~~~~~~~~la~~l~~~-g~---------------~~eA~~~~~~al~~~P~~~~~~~~~~ 393 (444)
+++.++...+.|-=.+. |+. +...+.-+.+..+. ++ -..|++.+.+|++.+| ..+..+.-
T Consensus 309 q~Yad~q~lL~kYdDi~lpkS-Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP--HVp~YLLe 385 (539)
T PF04184_consen 309 QAYADVQALLAKYDDISLPKS-ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP--HVPKYLLE 385 (539)
T ss_pred CCHHHHHHHHHHhccccCCch-HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC--CCchhhhc
Confidence 99999999999975443 554 23333333332221 11 2357899999999999 44332221
Q ss_pred HH------HHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013398 394 KA------KVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 394 la------~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
+= .-..+.|+ .||+.+---.+..|+.-++.
T Consensus 386 ~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~veGA 421 (539)
T PF04184_consen 386 MKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVEGA 421 (539)
T ss_pred cCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHhH
Confidence 10 01234564 88888888888888866653
No 217
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00011 Score=66.12 Aligned_cols=110 Identities=12% Similarity=0.011 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--------hcCCCC---------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013398 320 LYRLSLEYAEQRKLNAAHYYAKMLLK--------LEGGSN---------LKGWLLMARILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 320 ~~~lg~~~~~~g~~~~A~~~~~~al~--------l~P~~~---------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~ 382 (444)
+-.-|.-+++.|++.+|...|+.|+. -.|..+ ...+.+...++...|+|-+++..+...|...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 34445555666666666666665543 223321 2445667777777788888888888888888
Q ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCccch
Q 013398 383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF 431 (444)
Q Consensus 383 P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~ 431 (444)
| +|..++|.+|++....=+.++|.+.+.++|++.|.-..+-+.+.++
T Consensus 261 ~--~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~ 307 (329)
T KOG0545|consen 261 P--GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRL 307 (329)
T ss_pred C--chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 8 7888888888888777788888888888888887777665555554
No 218
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.001 Score=69.28 Aligned_cols=227 Identities=17% Similarity=0.065 Sum_probs=142.3
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH------------HHhhcCCCCCCHHH
Q 013398 130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQ------------IEELLPGIINRKER 197 (444)
Q Consensus 130 ~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~------------~~~al~~~p~~~~~ 197 (444)
++|...|..|+|.... -. -....+|.+++....+..+.+-|--+ ++++.+ +|++.+
T Consensus 736 SfyvtiG~MD~AfksI--------~~--IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e~e- 803 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSI--------QF--IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEEDE- 803 (1416)
T ss_pred eEEEEeccHHHHHHHH--------HH--HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcchh-
Confidence 4667778888885432 11 13456899999888877777666544 444444 344444
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh
Q 013398 198 YHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL 277 (444)
Q Consensus 198 ~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l 277 (444)
-..|.+-..+|-.++|+..|+++- +.| +.+-.|+..|++++|.+..+.-=. ...-..|++.
T Consensus 804 -akvAvLAieLgMlEeA~~lYr~ck--R~D---------LlNKlyQs~g~w~eA~eiAE~~DR-------iHLr~Tyy~y 864 (1416)
T KOG3617|consen 804 -AKVAVLAIELGMLEEALILYRQCK--RYD---------LLNKLYQSQGMWSEAFEIAETKDR-------IHLRNTYYNY 864 (1416)
T ss_pred -hHHHHHHHHHhhHHHHHHHHHHHH--HHH---------HHHHHHHhcccHHHHHHHHhhccc-------eehhhhHHHH
Confidence 346778889999999999999998 322 112235667888887766531111 0011223332
Q ss_pred hhhhhhhhhhhhchHHHHhhHHHHHHHHHHH----------HHhhC----------CCCHHHHHHHHHHHHHcCCHHHHH
Q 013398 278 GISLSAQSKVAITDFDRATRQAKALQALVSA----------ARSTN----------MRDLSILYRLSLEYAEQRKLNAAH 337 (444)
Q Consensus 278 g~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a----------l~~~~----------P~~~~a~~~lg~~~~~~g~~~~A~ 337 (444)
+.-+... ++.+.|++.|+++ + .-+ ..|+..|-.-|.-+...|+.+.|+
T Consensus 865 A~~Lear-----------~Di~~AleyyEK~~~hafev~rmL-~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 865 AKYLEAR-----------RDIEAALEYYEKAGVHAFEVFRML-KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred HHHHHhh-----------ccHHHHHHHHHhcCChHHHHHHHH-HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 2222211 2233444444332 1 112 234556666677777889999999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013398 338 YYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (444)
Q Consensus 338 ~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 415 (444)
.+|..| .-|+.+..+..-+|+.++|-.+-+ .. .|..+-|++|..|...|++.+|+..|.+|-
T Consensus 933 ~~Y~~A---------~D~fs~VrI~C~qGk~~kAa~iA~-----es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 933 SFYSSA---------KDYFSMVRIKCIQGKTDKAARIAE-----ES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHh---------hhhhhheeeEeeccCchHHHHHHH-----hc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999876 345556777777888888865543 23 567788999999999999999998776653
No 219
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.0012 Score=62.28 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhh-CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013398 298 QAKALQALVSAARST-NMRDLS---ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (444)
Q Consensus 298 ~~eA~~~~~~al~~~-~P~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~ 373 (444)
.+.-...+++++ .. +|+-|- +.-.++..+.+.|-|++|++..++++++||.+ .-+.+.++.++...||++|+.+
T Consensus 153 ~~~~k~ai~kIi-p~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D-~Wa~Ha~aHVlem~~r~Keg~e 230 (491)
T KOG2610|consen 153 QIGKKNAIEKII-PKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD-CWASHAKAHVLEMNGRHKEGKE 230 (491)
T ss_pred hhhhhhHHHHhc-cccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc-hHHHHHHHHHHHhcchhhhHHH
Confidence 445556666666 44 555532 33345556667777777777777777777776 3666777777777777777777
Q ss_pred HHHHHHhhcCCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013398 374 ILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGAVETYTH 413 (444)
Q Consensus 374 ~~~~al~~~P~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~ 413 (444)
...+--..-. + ...-|++-|..+.+-+.++.|++.|.+
T Consensus 231 FM~~ted~Wr--~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 231 FMYKTEDDWR--QSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHhcccchh--hhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 6654422111 0 012245566666666777777777765
No 220
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00022 Score=64.39 Aligned_cols=122 Identities=16% Similarity=0.070 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013398 63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI 142 (444)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi 142 (444)
..++..-|+-+++.|+++||++.|+.|+.+ + .++ .+.. .| |.. |=+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~---l---------~~L---~lkE----kP--------------~e~-eW~ 223 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIIC---L---------RNL---QLKE----KP--------------GEP-EWL 223 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHH---H---------HHH---Hhcc----CC--------------CCh-HHH
Confidence 356777788889999999999999999887 0 111 0110 01 000 111
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013398 143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
.+ +......+.+...++...|++-++++....+|...|+|..++|..|.+....=+..+|..-|.++|
T Consensus 224 eL------------dk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 224 EL------------DKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HH------------HHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 11 011233677888899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChH
Q 013398 223 SGSEDPKCLP 232 (444)
Q Consensus 223 ~~~~~P~~~~ 232 (444)
.++|.-..
T Consensus 292 --~ldpslas 299 (329)
T KOG0545|consen 292 --ELDPSLAS 299 (329)
T ss_pred --hcChhhHH
Confidence 89996443
No 221
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.77 E-value=3.6e-05 Score=75.79 Aligned_cols=94 Identities=12% Similarity=0.029 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013398 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
+.++.|+..|.+|+ +++|+++..+-+.+.++.+.+++..|+.-+.+|++++|.. ..+|+..|.+.++.+++.+|+..+
T Consensus 18 ~~fd~avdlysKaI-~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAI-ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred chHHHHHHHHHHHH-hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHHHHHHHHHHH
Confidence 56899999999999 9999999999999999999999999999999999999999 599999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHH
Q 013398 376 NAALDQTGKWEQGELLRT 393 (444)
Q Consensus 376 ~~al~~~P~~~~~~~~~~ 393 (444)
++...+.| ++..+...
T Consensus 96 ~~~~~l~P--nd~~~~r~ 111 (476)
T KOG0376|consen 96 EKVKKLAP--NDPDATRK 111 (476)
T ss_pred HHhhhcCc--CcHHHHHH
Confidence 99999999 66655443
No 222
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.75 E-value=6.2e-05 Score=46.79 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 353 KGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
.+|.++|.++..+|++++|+.+|++|++++|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 5788888888888888888888888888888
No 223
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.73 E-value=3.3e-05 Score=47.95 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013398 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (444)
Q Consensus 195 ~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~ 230 (444)
+++|+.+|.++..+|++++|+..|++++ .++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al--~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKAL--ELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH--HHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHCcCC
Confidence 4567778888888888888888888888 777764
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.71 E-value=0.0017 Score=55.38 Aligned_cols=70 Identities=21% Similarity=0.209 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013398 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
.+...++..+...|++++|+..+++++..+| -+..+|..+-.++..+|+..+|+..|++......+.-+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 4556677888899999999999999999999 899999999999999999999999999998877755443
No 225
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.68 E-value=0.06 Score=52.19 Aligned_cols=235 Identities=12% Similarity=-0.018 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHH-HHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHH
Q 013398 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKER-YHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKIC 241 (444)
Q Consensus 163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~ 241 (444)
++.+-+.+-.-.|+++.|..-|+..+.. |+.-.. .-.|=.--.+.|..+.|+.+-+++- ...|.-+.+........
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa--~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAA--EKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH--hhccCCchHHHHHHHHH
Confidence 4444456666789999999999987753 332221 1112222345789999999999999 88998877664333222
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013398 242 GEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (444)
Q Consensus 242 ~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~ 320 (444)
-..|+++.|+...+...+...-. +..-...+-..-+.+-... ..+...|...-.+++ ++.|+-..+-
T Consensus 199 -~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l----------dadp~~Ar~~A~~a~-KL~pdlvPaa 266 (531)
T COG3898 199 -CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL----------DADPASARDDALEAN-KLAPDLVPAA 266 (531)
T ss_pred -HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHh-hcCCccchHH
Confidence 23588999998887655432111 1111112211111111100 123455666666677 6777776666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcC--------------------------------CCChHHHHHHHHHHHHccCH
Q 013398 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEG--------------------------------GSNLKGWLLMARILSAQKRY 368 (444)
Q Consensus 321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P--------------------------------~~~~~~~~~la~~l~~~g~~ 368 (444)
.--+..+.+.|++.++-..++.+-+..| ++ .+..+..+..-..-|+|
T Consensus 267 v~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nn-aes~~~va~aAlda~e~ 345 (531)
T COG3898 267 VVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKPNN-AESSLAVAEAALDAGEF 345 (531)
T ss_pred HHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHhccch
Confidence 6666666666666666666665555555 33 24444444444444555
Q ss_pred HHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH
Q 013398 369 EDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-GQLKGAVETYTHLLA 416 (444)
Q Consensus 369 ~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 416 (444)
..|..--+.+....| ...++..++.+.... |+-.+.....-+++.
T Consensus 346 ~~ARa~Aeaa~r~~p---res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 346 SAARAKAEAAAREAP---RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhhhCc---hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 555555555555555 234444455554433 555555555555544
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.68 E-value=0.0033 Score=64.45 Aligned_cols=192 Identities=15% Similarity=0.045 Sum_probs=134.5
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh--hHHHHHhhhhhhhhhhhhhchHHH
Q 013398 217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME--STANCLLGISLSAQSKVAITDFDR 294 (444)
Q Consensus 217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~--~~a~~~lg~~~~~~~~~~~~~~~~ 294 (444)
.|.=++ .+=|....-.+. .....|+-+.++..+.++.+ .+.-.-+.- ....++.+....- + .+. .
T Consensus 179 ~f~L~l--SlLPp~~~kll~----~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~-~----~~~-~ 245 (468)
T PF10300_consen 179 LFNLVL--SLLPPKVLKLLS----FVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFL-G----IDG-E 245 (468)
T ss_pred HHHHHH--HhCCHHHHHHHh----hcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHc-C----Ccc-c
Confidence 444555 455544322221 13456788899999988877 222111110 1112222221111 0 000 2
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHccCHHHH
Q 013398 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARILSAQKRYEDA 371 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~~la~~l~~~g~~~eA 371 (444)
....+.|.+.+.... +.-|+.+-.++..|.++...|++++|++.|++++....+.+ .-++.-+|+++..+.+|++|
T Consensus 246 ~~~~~~a~~lL~~~~-~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEEML-KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 345788999999999 99999999999999999999999999999999986444321 24677899999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHhhhh
Q 013398 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQL-------KGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~l~~~~~~ 423 (444)
..++.+..+.+. |...-..|..|.++...|+. ++|.+.++++-.+..+...
T Consensus 325 ~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g 382 (468)
T PF10300_consen 325 AEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAG 382 (468)
T ss_pred HHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 999999999765 45566778889999999999 8888888888877765333
No 227
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.66 E-value=0.0038 Score=50.05 Aligned_cols=105 Identities=12% Similarity=0.092 Sum_probs=75.0
Q ss_pred HHHHHHHH--HHHcCCHHHHHHHHHHHHhhcCCCC-----------hHHHHHHHHHHHHccCHHHHHHHHHHHHh-----
Q 013398 319 ILYRLSLE--YAEQRKLNAAHYYAKMLLKLEGGSN-----------LKGWLLMARILSAQKRYEDAETILNAALD----- 380 (444)
Q Consensus 319 a~~~lg~~--~~~~g~~~~A~~~~~~al~l~P~~~-----------~~~~~~la~~l~~~g~~~eA~~~~~~al~----- 380 (444)
+|..|+.. ...-|-+++|...|++|.+..-.-| +-++-.|+..+..+|+|++++...+++|.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 44444333 3445889999999999988664311 34667888999999999999998888884
Q ss_pred --hcCCCCcHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013398 381 --QTGKWEQGELL----RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (444)
Q Consensus 381 --~~P~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 425 (444)
++. |....| +++|..+..+|+.++|+..|+.+-++...+.+..
T Consensus 89 GEL~q--deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE~ 137 (144)
T PF12968_consen 89 GELHQ--DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGEM 137 (144)
T ss_dssp --TTS--THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S--
T ss_pred ccccc--ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Confidence 444 554444 6899999999999999999999999988777643
No 228
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.64 E-value=3.3e-05 Score=76.06 Aligned_cols=98 Identities=9% Similarity=-0.013 Sum_probs=90.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013398 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (444)
Q Consensus 323 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g 402 (444)
-+.....-+.++.|+..|.||++++|++ +..+-+.+..+.+.+.|-.|+.-..+|++.+| ....+|+.+|...+..+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnc-a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP--~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNC-AIYFANRALAHLKVESFGGALHDALKAIELDP--TYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcc-eeeechhhhhheeechhhhHHHHHHhhhhcCc--hhhheeeeccHHHHhHH
Confidence 3445556788999999999999999998 58999999999999999999999999999999 89999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhh
Q 013398 403 QLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 403 ~~~~A~~~~~~al~l~~~~~~ 423 (444)
++.+|+..|+....+.|.+..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHH
Confidence 999999999999999987765
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.00065 Score=62.02 Aligned_cols=139 Identities=10% Similarity=-0.020 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHhhcCCCC-CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHH
Q 013398 197 RYHILALCYYGAGEDLVALNLLRTLLSGSED-PKCLPALLIASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTAN 274 (444)
Q Consensus 197 ~~~~la~~l~~~g~~~~A~~~~~~al~~~~~-P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~ 274 (444)
+.|-+..++...|.|.-....+.+++ ..+ |..+...-.++++. .+-|+.+.|..+++++-+.... +.-+....++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi--~~~~e~~p~L~s~Lgr~~-MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVI--KYYPEQEPQLLSGLGRIS-MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHH--HhCCcccHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 45667888888999999999999999 566 55666666666665 4468888888888866542211 0001111222
Q ss_pred HHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013398 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
.+...++.. .+++.+|...|.+++ ..||.|+.+.++-|.++.-.|+..+|++..+.++...|..
T Consensus 256 ~n~a~i~lg-----------~nn~a~a~r~~~~i~-~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 256 MNSAFLHLG-----------QNNFAEAHRFFTEIL-RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhhheec-----------ccchHHHHHHHhhcc-ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 222222221 245677777777777 7777777777777777777777777777777777777764
No 230
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0094 Score=55.74 Aligned_cols=135 Identities=18% Similarity=0.108 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013398 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (444)
Q Consensus 161 ~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (444)
.+.-..-+.-+...|++.+|...|..++...|++.++-..|+.+|...|+.+.|...+...= .... ....+.
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP--~~~~-~~~~~~----- 205 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP--LQAQ-DKAAHG----- 205 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc--ccch-hhHHHH-----
Confidence 33444556678889999999999999999999999999999999999999999988876533 1111 111110
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013398 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (444)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~ 320 (444)
....++.+.++-. .|+ +..+++.+ ..||+|.++-
T Consensus 206 -------l~a~i~ll~qaa~-~~~-------------------------------------~~~l~~~~-aadPdd~~aa 239 (304)
T COG3118 206 -------LQAQIELLEQAAA-TPE-------------------------------------IQDLQRRL-AADPDDVEAA 239 (304)
T ss_pred -------HHHHHHHHHHHhc-CCC-------------------------------------HHHHHHHH-HhCCCCHHHH
Confidence 0111233333332 111 23455666 8899999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013398 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
+.+|..+...|+.++|++.+-..++.|-.
T Consensus 240 ~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 240 LALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999888887654
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0019 Score=60.33 Aligned_cols=116 Identities=17% Similarity=0.036 Sum_probs=84.6
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHH-HH--HHHHHccCHHHH
Q 013398 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL-MA--RILSAQKRYEDA 371 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~-la--~~l~~~g~~~eA 371 (444)
.+++.+|...|+.++ +.+|++.++...++.+|...|+.++|...+...=.-..+ ..+.. .+ ..+.......+
T Consensus 147 ~e~~~~a~~~~~~al-~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~---~~~~~l~a~i~ll~qaa~~~~- 221 (304)
T COG3118 147 AEDFGEAAPLLKQAL-QAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD---KAAHGLQAQIELLEQAAATPE- 221 (304)
T ss_pred ccchhhHHHHHHHHH-HhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh---hHHHHHHHHHHHHHHHhcCCC-
Confidence 467899999999999 999999999999999999999999999888764221221 22222 11 11111122221
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013398 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (444)
Q Consensus 372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 417 (444)
...+++.+..+| ++.++-+.+|..+...|+.++|++.+-..+..
T Consensus 222 ~~~l~~~~aadP--dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRRLAADP--DDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 234566677889 89999999999999999999998877666654
No 232
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.013 Score=52.77 Aligned_cols=225 Identities=14% Similarity=0.065 Sum_probs=130.9
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Q 013398 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (444)
Q Consensus 131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~ 210 (444)
+|...+++++|..++ ..-|+.+...+++..|-..|.++ |.++.+.|.
T Consensus 23 lfgg~~k~eeAadl~-------------------~~Aan~yklaK~w~~AG~aflka--------------A~~h~k~~s 69 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELY-------------------ERAANMYKLAKNWSAAGDAFLKA--------------ADLHLKAGS 69 (288)
T ss_pred ccCCCcchHHHHHHH-------------------HHHHHHHHHHHhHHHHHHHHHHH--------------HHHHHhcCC
Confidence 444556777776653 24566677777777776665543 444445554
Q ss_pred chHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc-hhhhHHHHHhhhhhhhhhhhhh
Q 013398 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCD-QMESTANCLLGISLSAQSKVAI 289 (444)
Q Consensus 211 ~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~-~~~~~a~~~lg~~~~~~~~~~~ 289 (444)
-.+|-..|-.+- -|++. .++.+|+.++++++++...-.. .+-+.-+..+|..|...
T Consensus 70 khDaat~YveA~-----------------~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd----- 126 (288)
T KOG1586|consen 70 KHDAATTYVEAA-----------------NCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD----- 126 (288)
T ss_pred chhHHHHHHHHH-----------------HHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh-----
Confidence 444444443333 23442 4666777777777776432110 01112233445554332
Q ss_pred chHHHHhhHHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh------HHHHH
Q 013398 290 TDFDRATRQAKALQALVSAARSTNMRDL------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL------KGWLL 357 (444)
Q Consensus 290 ~~~~~~~~~~eA~~~~~~al~~~~P~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~------~~~~~ 357 (444)
..++++||.+|+++. +.-..+- ..+...+..-...++|.+|++.|++...-.-+++. ..++.
T Consensus 127 -----l~d~ekaI~~YE~Aa-e~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyflk 200 (288)
T KOG1586|consen 127 -----LQDFEKAIAHYEQAA-EYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLK 200 (288)
T ss_pred -----HHHHHHHHHHHHHHH-HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHH
Confidence 356889999999988 6544332 23344455566789999999999999887766531 23445
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHH
Q 013398 358 MARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV-----QGQLKGAVETYTHLLAA 417 (444)
Q Consensus 358 la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~l 417 (444)
-|.+++...+.-.+...+++-.+++|...+..=...+..+... ...+.+....|..+..+
T Consensus 201 AgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrL 265 (288)
T KOG1586|consen 201 AGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRL 265 (288)
T ss_pred HHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchH
Confidence 6788888889888999999999999943222222333333322 22344555555555333
No 233
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.0019 Score=56.60 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHHHHH
Q 013398 301 ALQALVSAARSTNMRDLS---ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 301 A~~~~~~al~~~~P~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
.+...++-+ .-+|.+.. +...++..+.+.|++++|+..++.++....|.. .-+-..|+.++..+|.+++|+..+
T Consensus 71 ~~~~~ekf~-~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 71 SIAAAEKFV-QANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hHHHHHHHH-hhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 334444444 55555543 235677788888999999999998887544431 134557888899999999998887
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013398 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (444)
Q Consensus 376 ~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 418 (444)
+..-+ +.| .+...-.+|.++...|+.++|...|++++...
T Consensus 150 ~t~~~--~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKE--ESW-AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hcccc--ccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 65432 211 23445678999999999999999999998875
No 234
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0058 Score=55.04 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=67.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH
Q 013398 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (444)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~ 318 (444)
.++-..+.+++.||.+|+++-+-...+.. ..+. ..|+.+.+.++ -..+++.+|+..|+++. ...-+|+.
T Consensus 121 EiyEsdl~d~ekaI~~YE~Aae~yk~ees-~ssA-----NKC~lKvA~ya----a~leqY~~Ai~iyeqva-~~s~~n~L 189 (288)
T KOG1586|consen 121 EIYESDLQDFEKAIAHYEQAAEYYKGEES-VSSA-----NKCLLKVAQYA----AQLEQYSKAIDIYEQVA-RSSLDNNL 189 (288)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHcchhh-hhhH-----HHHHHHHHHHH----HHHHHHHHHHHHHHHHH-HHhccchH
Confidence 34334446778888888888875543211 1111 11222211111 23578999999999999 87777765
Q ss_pred HH-------HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013398 319 IL-------YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (444)
Q Consensus 319 a~-------~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 351 (444)
.- +.-|.++.-..+.-.+...+++-.+++|.+.
T Consensus 190 LKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 190 LKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 43 4557888877888889999999999999873
No 235
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.003 Score=60.25 Aligned_cols=42 Identities=2% Similarity=-0.107 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013398 197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (444)
Q Consensus 197 ~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (444)
+|..+.....+.+..+.|..+|.+|+ +..+-...+|...|.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~--~~~~~~~~vy~~~A~~ 44 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRAR--KDKRCTYHVYVAYALM 44 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCS-THHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHH--cCCCCCHHHHHHHHHH
Confidence 45555566666666666666666666 4444444444433333
No 236
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.55 E-value=0.039 Score=52.79 Aligned_cols=169 Identities=15% Similarity=0.069 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHCC----CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCCcch
Q 013398 196 ERYHILALCYYGAG----EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY---PDLAEEGATFASRALECLGDGCDQ 268 (444)
Q Consensus 196 ~~~~~la~~l~~~g----~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~---~~~~~eA~~~~~~al~~~~~~~~~ 268 (444)
.+.+.+|..|..-. +..+|...|+.+. +..++.+.+.+|.++..- ..+..+|..+|+++.+.-.+. .
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a----~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~--a 147 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAA----ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE--A 147 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHh----hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh--H
Confidence 44444555544432 3455666666433 444555555555554332 225566677777666632111 0
Q ss_pred hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 013398 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLL 344 (444)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al 344 (444)
..+.+.+|..|..-..... -......|+..|.++. ... ++.+.+++|.+|.. ..++.+|...|++|.
T Consensus 148 --~~~~~~l~~~~~~g~~~~~----~~~~~~~A~~~~~~aa-~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa 218 (292)
T COG0790 148 --ALAMYRLGLAYLSGLQALA----VAYDDKKALYLYRKAA-ELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAA 218 (292)
T ss_pred --HHHHHHHHHHHHcChhhhc----ccHHHHhHHHHHHHHH-Hhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 1225555555544210000 0012358999999998 666 88999999988865 358999999999999
Q ss_pred hhcCCCChHHHHHHHHHHHHcc---------------CHHHHHHHHHHHHhhcC
Q 013398 345 KLEGGSNLKGWLLMARILSAQK---------------RYEDAETILNAALDQTG 383 (444)
Q Consensus 345 ~l~P~~~~~~~~~la~~l~~~g---------------~~~eA~~~~~~al~~~P 383 (444)
+... . .+++.++ ++...| +...|..++.++....+
T Consensus 219 ~~g~--~-~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 219 EQGD--G-AACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HCCC--H-HHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 8876 3 7788888 666666 44555555555554443
No 237
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.55 E-value=0.065 Score=55.76 Aligned_cols=52 Identities=15% Similarity=-0.005 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013398 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
.|-.++.-|...|+|+.|.+.|.++=.. ..--..|-+.|+++.|.+.-.++.
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~~--------~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADLF--------KDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcchh--------HHHHHHHhccccHHHHHHHHHHhc
Confidence 4445666667777777777776654322 112344556677777776666666
No 238
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.52 E-value=0.011 Score=59.33 Aligned_cols=239 Identities=12% Similarity=0.057 Sum_probs=161.3
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHCCC--------------chHHHHHHHHhhcCCCCCCChHHHHHHHHHH--hcCCC
Q 013398 183 QIEELLPGIINRKERYHILALCYYGAGE--------------DLVALNLLRTLLSGSEDPKCLPALLIASKIC--GEYPD 246 (444)
Q Consensus 183 ~~~~al~~~p~~~~~~~~la~~l~~~g~--------------~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~--~~~~~ 246 (444)
.|++++..-+-.++.|+..+.-+...++ .+++..+|++++. .+.-.+...++.++..- ....+
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~-~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE-GLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHhcccc
Confidence 4566666667788888887777777666 7889999999994 34444443333222211 01122
Q ss_pred CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH-HHHHHHHH
Q 013398 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-SILYRLSL 325 (444)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~-~a~~~lg~ 325 (444)
..+.--..+.+++.+...+. ..+|..+=..- .|..-...|...|.++- + ++... .++..-|.
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~----tLv~~~~mn~i-----------rR~eGlkaaR~iF~kaR-~-~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDL----TLVYCQYMNFI-----------RRAEGLKAARKIFKKAR-E-DKRTRHHVFVAAAL 408 (656)
T ss_pred hhhhhHHHHHHHHhhhccCC----ceehhHHHHHH-----------HHhhhHHHHHHHHHHHh-h-ccCCcchhhHHHHH
Confidence 35556677788887543332 12222211110 12233567788888886 4 34333 55544443
Q ss_pred H-HHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHHHhC
Q 013398 326 E-YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ--TGKWEQGELLRTKAKVQLVQG 402 (444)
Q Consensus 326 ~-~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~la~~~~~~g 402 (444)
. |.-+++.+-|.+.|+-.+...||.+ ..-+.....+...++-..|...|++++.. .|+ ...++|-..-.-...-|
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf~d~p-~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~-ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKFGDSP-EYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD-KSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh-hhHHHHHHHHHHHHhcc
Confidence 3 4568999999999999999999986 77777788889999999999999999976 663 45788888888888999
Q ss_pred CHHHHHHHHHHHHHHHHhh--hhhccCccch--hhhccCCCCC
Q 013398 403 QLKGAVETYTHLLAALQVQ--TKTFSSDKRF--YKVCLSPSCP 441 (444)
Q Consensus 403 ~~~~A~~~~~~al~l~~~~--~~~~~~~~~~--~~~~~~~~~~ 441 (444)
+....++.=++-..-.|.. +.....+.+. ++++++-.|-
T Consensus 487 dL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred cHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccccc
Confidence 9999998888888777733 3345555555 8888888774
No 239
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.52 E-value=0.00021 Score=44.33 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013398 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666777777777777777777777777664
No 240
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.48 E-value=0.078 Score=51.97 Aligned_cols=154 Identities=13% Similarity=0.000 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCC----CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC-C--
Q 013398 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGII----NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK-C-- 230 (444)
Q Consensus 158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~-~-- 230 (444)
......|..++.+..+.|+++.|...+.++...++ ..+.+.+..+.++...|+..+|+..++..+ ...+. .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~--~~~~~~~~~ 220 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL--KCRLSKNID 220 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH--HHHhhhccc
Confidence 45667889999999999999999999999988652 257788889999999999999999999988 41111 1
Q ss_pred hHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHH
Q 013398 231 LPALLI-ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (444)
Q Consensus 231 ~~a~~~-~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al 309 (444)
+..... ..+............. ........+.++..+|.-..... . . ...+..++++..|++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~a~~~l~~a~w~~~~~-~---~-~~~~~~~~~~~~~~~a~ 285 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNL----------DKESKELKAKAFLLLAKWLDELY-S---K-LSSESSDEILKYYKEAT 285 (352)
T ss_pred cccHHHHhhccccccccccccch----------hhhhHHHHHHHHHHHHHHHHhhc-c---c-cccccHHHHHHHHHHHH
Confidence 100000 0000000000000000 00011123455555555443320 0 0 01256789999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHH
Q 013398 310 RSTNMRDLSILYRLSLEYAE 329 (444)
Q Consensus 310 ~~~~P~~~~a~~~lg~~~~~ 329 (444)
..+|+...+|+.+|..+..
T Consensus 286 -~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 286 -KLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred -HhChhHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 241
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.45 E-value=8.7e-05 Score=70.04 Aligned_cols=117 Identities=16% Similarity=0.107 Sum_probs=95.1
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013398 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~ 374 (444)
.|.+++|++.|.+++ .++|..+..+-..|.++.++++...|++.|..|++++||. +..+-..|.....+|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai-~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAI-ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred Ccchhhhhccccccc-ccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhchHHHHHH
Confidence 367899999999999 9999999999999999999999999999999999999998 48888889999999999999999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013398 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 375 ~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
+..+.+++-+ ....+| +-.+.-..+..++-...|++..+
T Consensus 205 l~~a~kld~d-E~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 205 LALACKLDYD-EANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHhcccc-HHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 9999988752 122222 33344444555555555555544
No 242
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.43 E-value=0.0019 Score=50.17 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013398 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 301 A~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
.+..+++.+ +.+|+|+++.+.+|..+...|++++|++.+-.++..+|++
T Consensus 7 ~~~al~~~~-a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAAL-AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHH-HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHH-HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 455666666 6666666666666666666666666666666666666554
No 243
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00088 Score=63.14 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=81.0
Q ss_pred hHHHHhhHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc
Q 013398 291 DFDRATRQAKALQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (444)
Q Consensus 291 ~~~~~~~~~eA~~~~~~al~~~~P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g 366 (444)
.+.+..+|..|+.+|.+.+ +..-.|++ .|.|.+.+....|+|..|+.-+.+|+.++|++ ..++..-+.++..++
T Consensus 90 ~~fK~Kryk~A~~~Yt~Gl-k~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 90 EYFKEKRYKDAVESYTEGL-KKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRGAKCLLELE 167 (390)
T ss_pred HHHHhhhHHHHHHHHHHHH-hhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhhhHHHHHHH
Confidence 3466788999999999999 88777665 45788999999999999999999999999999 699999999999999
Q ss_pred CHHHHHHHHHHHHhhcC
Q 013398 367 RYEDAETILNAALDQTG 383 (444)
Q Consensus 367 ~~~eA~~~~~~al~~~P 383 (444)
++++|+.+++..+..+-
T Consensus 168 ~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 168 RFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHhhhhhhhH
Confidence 99999999999988765
No 244
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00068 Score=63.86 Aligned_cols=103 Identities=18% Similarity=-0.006 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013398 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la 395 (444)
-+-.-|.-|.+.++|..|+..|.+.|+.+-.+ .+..|.+.+.+..-.|+|-.|+.-+.+|+..+| .+..+++.-|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P--~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP--THLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc--chhhhhhhhh
Confidence 33456899999999999999999999866433 246789999999999999999999999999999 9999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 396 KVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
.++..+.++++|+.+++..+.+..+...
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 9999999999999999999887765443
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0075 Score=57.10 Aligned_cols=120 Identities=14% Similarity=-0.024 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-cCCCChHHH--HHHHHHHHHccCHHHHH
Q 013398 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL-EGGSNLKGW--LLMARILSAQKRYEDAE 372 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~~~~--~~la~~l~~~g~~~eA~ 372 (444)
|.+.+|-...++.+ +-.|.|--++..--.++.-+|+...-...++|.+-. +|+-|...| -.++..+...|-|++|.
T Consensus 117 g~~h~a~~~wdklL-~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLL-DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHH-HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 56778888999999 999999999998888999999999999999999987 887642222 24566788889999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013398 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (444)
Q Consensus 373 ~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 418 (444)
..-+++++++| .+.-+...++.++...|++.++.+...+--+.|
T Consensus 196 k~A~ralqiN~--~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W 239 (491)
T KOG2610|consen 196 KQADRALQINR--FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW 239 (491)
T ss_pred HHHHhhccCCC--cchHHHHHHHHHHHhcchhhhHHHHHHhcccch
Confidence 99999999999 888889999999999999999987665544433
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.30 E-value=0.0028 Score=64.92 Aligned_cols=119 Identities=19% Similarity=0.094 Sum_probs=94.9
Q ss_pred CcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHHCCCc
Q 013398 136 NNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK----ERYHILALCYYGAGED 211 (444)
Q Consensus 136 ~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~l~~~g~~ 211 (444)
...+.|..++ +....+.|+..-.....|.++...|+.++|++.|++++.....-. -.++.+|.++..+++|
T Consensus 247 ~~~~~a~~lL-----~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w 321 (468)
T PF10300_consen 247 VPLEEAEELL-----EEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW 321 (468)
T ss_pred CCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH
Confidence 3556676665 445688899999999999999999999999999999996443333 3467799999999999
Q ss_pred hHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHH
Q 013398 212 LVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLA-------EEGATFASRALEC 261 (444)
Q Consensus 212 ~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~-------~eA~~~~~~al~~ 261 (444)
++|...|.+.+ +.+.-....+.+..++|+...++. ++|...++++-..
T Consensus 322 ~~A~~~f~~L~--~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 322 EEAAEYFLRLL--KESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHH--hccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999999 666665666777788888888888 6777777666553
No 247
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.024 Score=51.49 Aligned_cols=199 Identities=14% Similarity=0.070 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHH
Q 013398 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRK------ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235 (444)
Q Consensus 162 ~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~ 235 (444)
..|..-+.++...++|++|-.++.+|.+-.-+|. .++-.-|.++..+..+.|+...|++|. .
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs--~---------- 99 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS--E---------- 99 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--H----------
Confidence 3566667777788888888888888875432222 233344555555666666666666665 1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC
Q 013398 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (444)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~ 315 (444)
.|...|..+-|...++|+-+.+. ..+.++|++.|++++ .+--.
T Consensus 100 -----lY~E~GspdtAAmaleKAak~le-------------------------------nv~Pd~AlqlYqral-avve~ 142 (308)
T KOG1585|consen 100 -----LYVECGSPDTAAMALEKAAKALE-------------------------------NVKPDDALQLYQRAL-AVVEE 142 (308)
T ss_pred -----HHHHhCCcchHHHHHHHHHHHhh-------------------------------cCCHHHHHHHHHHHH-HHHhc
Confidence 12223444444433333333211 123456666666655 43222
Q ss_pred C---H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc--
Q 013398 316 D---L---SILYRLSLEYAEQRKLNAAHYYAKMLLKL----EGGSN-LKGWLLMARILSAQKRYEDAETILNAALDQT-- 382 (444)
Q Consensus 316 ~---~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l----~P~~~-~~~~~~la~~l~~~g~~~eA~~~~~~al~~~-- 382 (444)
+ - +.+-..+.++.+..++++|-..+.|-..+ +.-.. ...+...-.++.-..+|..|..+++..-...
T Consensus 143 ~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f 222 (308)
T KOG1585|consen 143 DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF 222 (308)
T ss_pred cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc
Confidence 2 1 12234456677777777777666654332 22221 1223333344444567888888877654332
Q ss_pred --CCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013398 383 --GKWEQGELLRTKAKVQLVQGQLKGAVETYT 412 (444)
Q Consensus 383 --P~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 412 (444)
| ++....-++-..+ ..|+.++.-..+.
T Consensus 223 ~~s--ed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 223 LKS--EDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred cCh--HHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 3 4444444444433 4466666555443
No 248
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.073 Score=48.51 Aligned_cols=167 Identities=10% Similarity=0.030 Sum_probs=98.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh---
Q 013398 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST--- 312 (444)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~--- 312 (444)
..+.++++..++++.|..++.++.+-...+ ..++.-+..|.+.+... .....+.|+...|++|. .+
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~yEnn------rslfhAAKayEqaamLa----ke~~klsEvvdl~eKAs-~lY~E 103 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKGYENN------RSLFHAAKAYEQAAMLA----KELSKLSEVVDLYEKAS-ELYVE 103 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHH-HHHHH
Confidence 344455666666666666666666532111 22333333333221110 11234566777777766 53
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q 013398 313 --NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQ---- 381 (444)
Q Consensus 313 --~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~---- 381 (444)
.|+.+..-...+-=..+..+.++|+..|++++++-..+. .+.+-..+.++.+.++|+||-..+.+-...
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~ 183 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC 183 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH
Confidence 344443334444445667899999999999998765542 133446678899999999998887765432
Q ss_pred --cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013398 382 --TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (444)
Q Consensus 382 --~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 415 (444)
.| +....+...-.++.-..++..|..+|+..-
T Consensus 184 ~~y~--~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 184 DAYN--SQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred hhcc--cHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 23 333444444455566669999999988743
No 249
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.22 E-value=0.0007 Score=41.88 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 353 KGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
.+|..+|.++..+|++++|+.+|+++++.+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566666666666666666666666666666
No 250
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.19 E-value=0.014 Score=57.29 Aligned_cols=169 Identities=13% Similarity=0.041 Sum_probs=110.4
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013398 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (444)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~ 320 (444)
.|+...+++.-+...+..-. .|.-+........+..+.++.+.. +.|+.++|+..+..++...++.+++++
T Consensus 150 SyRdiqdydamI~Lve~l~~-~p~~~~~~~~~i~~~yafALnRrn--------~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEA-LPTCDVANQHNIKFQYAFALNRRN--------KPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhc-cCccchhcchHHHHHHHHHHhhcc--------cCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 45666677665555554433 322111122344556666665421 257889999999995537788999999
Q ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH--------h---
Q 013398 321 YRLSLEYAEQ---------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL--------D--- 380 (444)
Q Consensus 321 ~~lg~~~~~~---------g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al--------~--- 380 (444)
.-+|.+|-+. ..+++|+..|+++.+++|+. ..+. |++.++...|...+...-.++.. +
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GI-N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGI-NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchH-HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 9999998542 35889999999999999886 3444 46666666765433332222211 1
Q ss_pred hcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013398 381 QTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 381 ~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
..+. ++...+-.++.+..-.|++++|.+++++++.+.|..
T Consensus 299 ~~~~-~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 299 LEKM-QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 1121 344455567777788999999999999999876543
No 251
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.009 Score=54.73 Aligned_cols=65 Identities=8% Similarity=-0.013 Sum_probs=43.1
Q ss_pred HHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC-CchHHHHHHHHhhcCCCCCCChHHHHH
Q 013398 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDPKCLPALLI 236 (444)
Q Consensus 170 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g-~~~~A~~~~~~al~~~~~P~~~~a~~~ 236 (444)
++.+..+.+.|...-+.+|.++|.+-.+|...-.++..++ +..+=+..+.+.+ .-+|+|-+++..
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~--e~npKNYQvWHH 117 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEII--EDNPKNYQVWHH 117 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHH--HhCccchhHHHH
Confidence 4455566677777777777777777777777666666654 3445556666666 667777666543
No 252
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.13 E-value=0.0072 Score=46.88 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013398 336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (444)
Q Consensus 336 A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 415 (444)
.+..++++++.+|++ ..+.+.+|..+...|++++|++.+-.++..+|+|++..+...+-.++..+|.-+.-...|++-|
T Consensus 7 ~~~al~~~~a~~P~D-~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPDD-LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 467889999999999 5999999999999999999999999999999977778888999999999999888888888765
Q ss_pred H
Q 013398 416 A 416 (444)
Q Consensus 416 ~ 416 (444)
.
T Consensus 86 ~ 86 (90)
T PF14561_consen 86 A 86 (90)
T ss_dssp H
T ss_pred H
Confidence 4
No 253
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.07 E-value=0.042 Score=52.58 Aligned_cols=184 Identities=15% Similarity=-0.021 Sum_probs=128.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH---
Q 013398 135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA----GDLSSLATQIEELLPGIINRKERYHILALCYYG--- 207 (444)
Q Consensus 135 ~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~--- 207 (444)
.+.+..++..+... ..-.++.....++..+... .+..+|...|+.+. +.+++.+.++||.+|..
T Consensus 54 ~~~~~~a~~~~~~a-------~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 54 PPDYAKALKSYEKA-------AELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRG 124 (292)
T ss_pred cccHHHHHHHHHHh-------hhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCC
Confidence 44566776654211 1123456777888877753 46889999999554 46789999999999998
Q ss_pred -CCCchHHHHHHHHhhcCCCCCCChHH---HHHHHHHHhcC---C-C--CHHHHHHHHHHHHHHcCCCcchhhhHHHHHh
Q 013398 208 -AGEDLVALNLLRTLLSGSEDPKCLPA---LLIASKICGEY---P-D--LAEEGATFASRALECLGDGCDQMESTANCLL 277 (444)
Q Consensus 208 -~g~~~~A~~~~~~al~~~~~P~~~~a---~~~~~~~~~~~---~-~--~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l 277 (444)
..++.+|...|+++. .. +++.+ .+.++..+... . - ....|+.+|.++-... ...+.+.+
T Consensus 125 v~~d~~~A~~~~~~Aa--~~--g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-------~~~a~~~l 193 (292)
T COG0790 125 VPLDLVKALKYYEKAA--KL--GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-------NPDAQLLL 193 (292)
T ss_pred cccCHHHHHHHHHHHH--Hc--CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-------CHHHHHHH
Confidence 458999999999999 33 33333 55555554332 0 1 2337888888888853 24688889
Q ss_pred hhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHH
Q 013398 278 GISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---------------KLNAAHYYAKM 342 (444)
Q Consensus 278 g~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g---------------~~~~A~~~~~~ 342 (444)
|.+|..- .-. ..+..+|+..|+++. +... ..+.++++ ++...| +...|...+.+
T Consensus 194 g~~y~~G-~Gv------~~d~~~A~~wy~~Aa-~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~ 262 (292)
T COG0790 194 GRMYEKG-LGV------PRDLKKAFRWYKKAA-EQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQK 262 (292)
T ss_pred HHHHHcC-CCC------CcCHHHHHHHHHHHH-HCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHH
Confidence 9887653 110 136789999999999 7777 89999999 777666 66677777777
Q ss_pred HHhhcCC
Q 013398 343 LLKLEGG 349 (444)
Q Consensus 343 al~l~P~ 349 (444)
+....+.
T Consensus 263 ~~~~~~~ 269 (292)
T COG0790 263 ACELGFD 269 (292)
T ss_pred HHHcCCh
Confidence 7665554
No 254
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.07 E-value=0.2 Score=52.29 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhC
Q 013398 65 AVELLPELWKLADAPRETIMSYRRALL 91 (444)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~~y~~aL~ 91 (444)
-+...-.+++.++..++|+..|+..-+
T Consensus 546 kfk~ae~ifleqn~te~aigmy~~lhk 572 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQNATEEAIGMYQELHK 572 (1636)
T ss_pred hhhHHHHHHHhcccHHHHHHHHHHHHh
Confidence 333344577888888999888876543
No 255
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.04 E-value=0.4 Score=47.60 Aligned_cols=62 Identities=23% Similarity=0.256 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013398 315 RDLSILYRLSLE--YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (444)
Q Consensus 315 ~~~~a~~~lg~~--~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a 378 (444)
.+.+.-+.|+.+ ++.+|+|.++.-+..=..++.| ++ .++..+|.++..+++|+||..++...
T Consensus 458 ~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~-~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 458 SEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SP-QAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cH-HHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 445555666544 5678999999999999999999 54 99999999999999999999998653
No 256
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.04 E-value=0.32 Score=52.11 Aligned_cols=295 Identities=17% Similarity=0.076 Sum_probs=165.6
Q ss_pred HHHHHHHHhhhcCCCCCCccc---cccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCHHHH
Q 013398 105 QKEFAIFLLYCGGETCPPNLR---SQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWD-PSILDHLSFAFSIAGDLSSL 180 (444)
Q Consensus 105 ~~~~a~~ll~~~~~~~~~~~~---~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~-~~~~~~lg~~l~~~g~~~~A 180 (444)
...+++++...-....++... ......+...|...+||.-. ....+|.- .+.....+.-+...++..--
T Consensus 327 H~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~hA-------laA~d~~~aa~lle~~~~~L~~~~~lsll 399 (894)
T COG2909 327 HHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDHA-------LAAGDPEMAADLLEQLEWQLFNGSELSLL 399 (894)
T ss_pred hHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHHH-------HhCCCHHHHHHHHHhhhhhhhcccchHHH
Confidence 556677655443332222211 12234567778888888643 22222321 11222223333333433322
Q ss_pred HHHHHhhc-CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH-------HHHHHHHHHhcCCCCHHHHH
Q 013398 181 ATQIEELL-PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-------ALLIASKICGEYPDLAEEGA 252 (444)
Q Consensus 181 ~~~~~~al-~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~-------a~~~~~~~~~~~~~~~~eA~ 252 (444)
.......- ..--.+|......|-......++.+|..++.++..+-..|++.. .....+.+. ...|++++|+
T Consensus 400 ~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~va-l~~~~~e~a~ 478 (894)
T COG2909 400 LAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVA-LNRGDPEEAE 478 (894)
T ss_pred HHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHH-HhcCCHHHHH
Confidence 22221110 00113556666678888899999999999988874222333221 112223333 3468999999
Q ss_pred HHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh----CCCCHHHH--HHHHHH
Q 013398 253 TFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST----NMRDLSIL--YRLSLE 326 (444)
Q Consensus 253 ~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~----~P~~~~a~--~~lg~~ 326 (444)
+..+.+++.+|++.......+...+|.+..- .|++++|..+.+.+. +. +--...+| +.-+.+
T Consensus 479 ~lar~al~~L~~~~~~~r~~~~sv~~~a~~~-----------~G~~~~Al~~~~~a~-~~a~~~~~~~l~~~~~~~~s~i 546 (894)
T COG2909 479 DLARLALVQLPEAAYRSRIVALSVLGEAAHI-----------RGELTQALALMQQAE-QMARQHDVYHLALWSLLQQSEI 546 (894)
T ss_pred HHHHHHHHhcccccchhhhhhhhhhhHHHHH-----------hchHHHHHHHHHHHH-HHHHHcccHHHHHHHHHHHHHH
Confidence 9999999988876544444555556655433 367888888888877 65 33333444 334777
Q ss_pred HHHcC--CHHHHHHHHHHH----HhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh----cCCCCc-HHHHHHHH
Q 013398 327 YAEQR--KLNAAHYYAKML----LKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ----TGKWEQ-GELLRTKA 395 (444)
Q Consensus 327 ~~~~g--~~~~A~~~~~~a----l~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~----~P~~~~-~~~~~~la 395 (444)
+..+| .+++.+..|... +.-.|-+ .-.....+.++...-|++.+..-..+.++. .|.+-. .-+...++
T Consensus 547 l~~qGq~~~a~~~~~~~~~~~q~l~q~~~~-~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA 625 (894)
T COG2909 547 LEAQGQVARAEQEKAFNLIREQHLEQKPRH-EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLA 625 (894)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhcccc-hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence 78888 344444444433 2233443 134444555555555677777666666644 231112 22334789
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHh
Q 013398 396 KVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
.+....|+.++|.........+...
T Consensus 626 ~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 626 ELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999998888776553
No 257
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.03 E-value=0.0077 Score=47.99 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=74.4
Q ss_pred HHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhh
Q 013398 201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS 280 (444)
Q Consensus 201 la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 280 (444)
+|..++..|++-+|+++.+..+ ..++++...++. .. .++--+++.+....+|+ ...-
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i--~~h~~~~~~~~l-----h~-----~QG~if~~lA~~ten~d-----~k~~------ 58 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLI--SRHGEDESSWLL-----HR-----LQGTIFYKLAKKTENPD-----VKFR------ 58 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHH--HHccCCCchHHH-----HH-----HHhHHHHHHHHhccCch-----HHHH------
Confidence 4667888899999999999999 777776643321 00 01222333344332222 2222
Q ss_pred hhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013398 281 LSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (444)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 347 (444)
.+-.++++|.+++ .+.|+.+..++.||.-+-...-|++++...+++|.+.
T Consensus 59 ----------------yLl~sve~~s~a~-~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 59 ----------------YLLGSVECFSRAV-ELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred ----------------HHHHhHHHHHHHh-ccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 2346889999999 9999999999999988888888999999999998753
No 258
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.99 E-value=0.046 Score=46.40 Aligned_cols=61 Identities=23% Similarity=0.197 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013398 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al 379 (444)
.++..++..+...|++++|+..+++++.++|-+ -.+|..+-.++...|++.+|+..|++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 445566677777888888888888888888887 4788888888888888888888887664
No 259
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.97 E-value=0.0014 Score=40.05 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013398 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
+++++|.++.+.|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 260
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.95 E-value=0.0022 Score=40.42 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013398 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
|.++|.++..+|++++|++.|+++|.+.++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 445555555555555555555555555443
No 261
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.87 E-value=0.17 Score=53.19 Aligned_cols=235 Identities=14% Similarity=0.005 Sum_probs=145.4
Q ss_pred CCHHHHHHHHHHHHhc-----CCHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHHHCC-----CchHHHHHHHHhhc
Q 013398 159 WDPSILDHLSFAFSIA-----GDLSSLATQIEELLP-----GIINRKERYHILALCYYGAG-----EDLVALNLLRTLLS 223 (444)
Q Consensus 159 ~~~~~~~~lg~~l~~~-----g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~l~~~g-----~~~~A~~~~~~al~ 223 (444)
.+..+...+|.++..- .+.+.|+.+|+.+.+ ..-..+.+.+.+|.+|.... +++.|...|.++-
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA- 320 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA- 320 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH-
Confidence 4666777888877754 689999999999966 12236678899999999964 5677999999999
Q ss_pred CCCCCCChHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHH
Q 013398 224 GSEDPKCLPALLIASKICGEYP--DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA 301 (444)
Q Consensus 224 ~~~~P~~~~a~~~~~~~~~~~~--~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA 301 (444)
.. +++.+.+.+|..+.... .+...|..+|..|... . ...+.+.++.||..-.- ...+...|
T Consensus 321 -~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G------~~~A~~~la~~y~~G~g-------v~r~~~~A 383 (552)
T KOG1550|consen 321 -EL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-G------HILAIYRLALCYELGLG-------VERNLELA 383 (552)
T ss_pred -hc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-C------ChHHHHHHHHHHHhCCC-------cCCCHHHH
Confidence 44 34456666666544333 3467999999999884 2 24688888888765310 12357899
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcCCCC-h-HHHHHHHH-HHHHc----cCHHHHHH
Q 013398 302 LQALVSAARSTNMRDLSILYRLSLEYAEQ-RKLNAAHYYAKMLLKLEGGSN-L-KGWLLMAR-ILSAQ----KRYEDAET 373 (444)
Q Consensus 302 ~~~~~~al~~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~-~-~~~~~la~-~l~~~----g~~~eA~~ 373 (444)
...|+++. +.+ ++.+.+.++..+.-. ++++.+.-.+...-++--+.+ . .+++..-. ..... .+..-+..
T Consensus 384 ~~~~k~aA-~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAA-EKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHH-Hcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 99999999 777 677777777666543 666666666655544432210 0 11111000 01111 13444555
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHH
Q 013398 374 ILNAALDQTGKWEQGELLRTKAKVQLVQ----GQLKGAVETYTHLLAAL 418 (444)
Q Consensus 374 ~~~~al~~~P~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~l~ 418 (444)
.+.++-.. .+..+...+|.++..- .+++.|...|.++..-.
T Consensus 461 ~~~~a~~~----g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 461 LYSRAAAQ----GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHHHHHhc----cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 55555432 3445555566655332 23566666666665433
No 262
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.87 E-value=0.00042 Score=65.59 Aligned_cols=88 Identities=9% Similarity=-0.011 Sum_probs=81.6
Q ss_pred cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHH
Q 013398 330 QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409 (444)
Q Consensus 330 ~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~ 409 (444)
.|.+++|++.|.+++.++|.. +..+-..+.++.++++...|+.-|+.|++++| |...-+-.+|.....+|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~-a~l~~kr~sv~lkl~kp~~airD~d~A~ein~--Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPL-AILYAKRASVFLKLKKPNAAIRDCDFAIEINP--DSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccCCch-hhhcccccceeeeccCCchhhhhhhhhhccCc--ccccccchhhHHHHHhhchHHHHH
Confidence 588999999999999999998 59999999999999999999999999999999 888888889999999999999999
Q ss_pred HHHHHHHHHHh
Q 013398 410 TYTHLLAALQV 420 (444)
Q Consensus 410 ~~~~al~l~~~ 420 (444)
.++.+..+.=+
T Consensus 204 dl~~a~kld~d 214 (377)
T KOG1308|consen 204 DLALACKLDYD 214 (377)
T ss_pred HHHHHHhcccc
Confidence 99999876543
No 263
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.86 E-value=0.074 Score=55.82 Aligned_cols=183 Identities=19% Similarity=0.200 Sum_probs=131.6
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC-----CCchHHHHHHHHhhcC---CCCCCChHHHHHHHHHHhcC---
Q 013398 176 DLSSLATQIEELLPGIINRKERYHILALCYYGA-----GEDLVALNLLRTLLSG---SEDPKCLPALLIASKICGEY--- 244 (444)
Q Consensus 176 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-----g~~~~A~~~~~~al~~---~~~P~~~~a~~~~~~~~~~~--- 244 (444)
+...|...|+.+-.. ++..+.+.+|.++..- .+.+.|+..|+.+.+. ...-.++.+...+|.+++..
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888888876 6888999999998875 5889999999998720 00111444555667766553
Q ss_pred CC-CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013398 245 PD-LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL 323 (444)
Q Consensus 245 ~~-~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l 323 (444)
.. +.+.|+.+|.++-+.-. ..+.+.+|.++.... ...+...|.+.|..|. .-.+..+.+++
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-------~~a~~~lg~~~~~g~--------~~~d~~~A~~yy~~Aa---~~G~~~A~~~l 366 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-------PDAQYLLGVLYETGT--------KERDYRRAFEYYSLAA---KAGHILAIYRL 366 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-------chHHHHHHHHHHcCC--------ccccHHHHHHHHHHHH---HcCChHHHHHH
Confidence 12 56789999999998533 358899999987643 0134679999999998 46788999999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHH-HHccCHHHHHHHHHHHHhh
Q 013398 324 SLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL-SAQKRYEDAETILNAALDQ 381 (444)
Q Consensus 324 g~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l-~~~g~~~eA~~~~~~al~~ 381 (444)
|.+|.. ..+...|..+|+++.+.++ + .+...++.++ ...+++..+...+....+.
T Consensus 367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~-~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 367 ALCYELGLGVERNLELAFAYYKKAAEKGN--P-SAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHHhCCCcCCCHHHHHHHHHHHHHccC--h-hhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 999875 3689999999999999883 2 4444444443 3338888877766555544
No 264
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.072 Score=48.99 Aligned_cols=113 Identities=13% Similarity=0.070 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHH-HHHHHHHH
Q 013398 300 KALQALVSAARSTNMRDLSILYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYE-DAETILNA 377 (444)
Q Consensus 300 eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~-eA~~~~~~ 377 (444)
.|+..-+.++ .++|.+..+|...=.++..++ ++.+=++++.+.++-+|++ .+.|...-.+....|++. .=+.....
T Consensus 61 RAl~LT~d~i-~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN-YQvWHHRr~ive~l~d~s~rELef~~~ 138 (318)
T KOG0530|consen 61 RALQLTEDAI-RLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN-YQVWHHRRVIVELLGDPSFRELEFTKL 138 (318)
T ss_pred HHHHHHHHHH-HhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc-hhHHHHHHHHHHHhcCcccchHHHHHH
Confidence 4444444455 555555555544444443332 4444455555555555554 355555444444444444 44444445
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013398 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 378 al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
++..+. .|..+|.++-=+....+.++.-+....+.|+
T Consensus 139 ~l~~Da--KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 139 MLDDDA--KNYHAWSHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred HHhccc--cchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 554444 3445555544444444445554444444444
No 265
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.018 Score=58.48 Aligned_cols=130 Identities=16% Similarity=0.051 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013398 298 QAKALQALVSAARSTNMRDLSILYR--LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~~~a~~~--lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
..-++..+..-+ .++|.++..+.. +...+...+....+.-....++..+|++. .+..+|+..+...|....++..+
T Consensus 47 ~~~~~~a~~~~~-~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 47 QALAIYALLLGI-AINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC-PAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred hhHHHHHHHccC-ccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc-hHHHHHHHHHHHhhhHHHHHHHH
Confidence 344677777788 889999987543 57788888999999999999999999995 99999999888888777766655
Q ss_pred HH-HHhhcCCCCcHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCccch
Q 013398 376 NA-ALDQTGKWEQGELLRTK------AKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF 431 (444)
Q Consensus 376 ~~-al~~~P~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~ 431 (444)
.. +....| ++......+ |..+..+|+..++.....++.++.|+...+.+.-...
T Consensus 125 ~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 125 SEIAEWLSP--DNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHhcCc--chHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 44 888889 888888877 9999999999999999999999999998877766555
No 266
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.77 E-value=0.0049 Score=42.47 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 013398 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~ 360 (444)
+.+|.+|..++++|+|++|..+++.+|+++|++. ++......
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~-Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR-QAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH-HHHHHHHH
Confidence 3467777777777777777777777777777773 66554433
No 267
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.77 E-value=0.0047 Score=57.72 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=59.6
Q ss_pred HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 013398 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~ 360 (444)
+.|+.++|...|+-|+ .++|++++++...|......+++-+|-.+|-+|+.++|.+. +++.+.+.
T Consensus 128 ~~Gk~ekA~~lfeHAl-alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns-eALvnR~R 192 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHAL-ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS-EALVNRAR 192 (472)
T ss_pred hccchHHHHHHHHHHH-hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch-HHHhhhhc
Confidence 3577899999999999 99999999999999999999999999999999999999994 88887654
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.74 E-value=0.0032 Score=39.62 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013398 320 LYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (444)
Q Consensus 320 ~~~lg~~~~~~g~~~~A~~~~~~al~l 346 (444)
+.+||.+|.++|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666666666666666664433
No 269
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.74 E-value=0.55 Score=44.65 Aligned_cols=75 Identities=16% Similarity=0.071 Sum_probs=51.5
Q ss_pred CchhHHHHHHHHHHHHHhhhhccc-chHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCCh
Q 013398 1 MSIHAISLLLEAIFLKAKCLQGLG-RFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAP 79 (444)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~ 79 (444)
+++.....++..+|+-|+.+.+.+ ++++|....+++.+..++..... ... ....+.--.++..++.+|.+.+.+
T Consensus 26 ~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~-~~~----~~~~elr~~iL~~La~~~l~~~~~ 100 (278)
T PF08631_consen 26 LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMD-KLS----PDGSELRLSILRLLANAYLEWDTY 100 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcc-ccC----CcHHHHHHHHHHHHHHHHHcCCCh
Confidence 367788899999999999999999 99999999999998876521110 110 012223345566666666665554
Q ss_pred H
Q 013398 80 R 80 (444)
Q Consensus 80 ~ 80 (444)
+
T Consensus 101 ~ 101 (278)
T PF08631_consen 101 E 101 (278)
T ss_pred H
Confidence 3
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.74 E-value=0.56 Score=44.64 Aligned_cols=125 Identities=15% Similarity=-0.002 Sum_probs=87.8
Q ss_pred cCCCcHHHHHHHHHHHHHHHHH-hhCCCCH----HHHHHHHHHHHhcC-CHHHHHHHHHhhcCC----C------CCC--
Q 013398 133 VPRNNIEEAILLLMILLRKVAL-KRIEWDP----SILDHLSFAFSIAG-DLSSLATQIEELLPG----I------INR-- 194 (444)
Q Consensus 133 ~~~~~~~eAi~~l~~~~~~~~l-~~~p~~~----~~~~~lg~~l~~~g-~~~~A~~~~~~al~~----~------p~~-- 194 (444)
..+|+++-|..++..+ +..+ ...|+.. ..+++.|.-+...+ +++.|+..++++..+ . |+.
T Consensus 4 ~~~~~~~~A~~~~~K~--~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKA--KDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHh--hhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 3577888888776543 1112 3445433 47788999999999 999999999888766 1 222
Q ss_pred --HHHHHHHHHHHHHCCCch---HHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 013398 195 --KERYHILALCYYGAGEDL---VALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECL 262 (444)
Q Consensus 195 --~~~~~~la~~l~~~g~~~---~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~ 262 (444)
..+...|+.+|...+.++ +|....+.+- ...|+.+..+.+...++.. .++.+++.+.+.+++...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~--~e~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLE--SEYGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH--HhCCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhc
Confidence 134556788898888765 4556666666 6788888888766677665 677888888888888854
No 271
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.70 E-value=0.0031 Score=38.41 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 353 KGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
++++.+|.++...|++++|+..|+++++..|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3667788888888888888888888888888
No 272
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.69 E-value=0.087 Score=51.28 Aligned_cols=161 Identities=11% Similarity=-0.067 Sum_probs=106.3
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCC------------HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHH
Q 013398 152 VALKRIEWDPSILDHLSFAFSIAGD------------LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR 219 (444)
Q Consensus 152 ~~l~~~p~~~~~~~~lg~~l~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~ 219 (444)
..+..+|.|.++|..+....-..-. .+.-+..|++||+.+|++...+..+-.+.......++..+..+
T Consensus 10 ~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we 89 (321)
T PF08424_consen 10 RRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWE 89 (321)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3457889999999877754443322 4566789999999999999999988888888888888899999
Q ss_pred HhhcCCCCCCChHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhh
Q 013398 220 TLLSGSEDPKCLPALLIASKICGEY--PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATR 297 (444)
Q Consensus 220 ~al~~~~~P~~~~a~~~~~~~~~~~--~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 297 (444)
+++ ..+|+++..+.......... .-.+++....|.++|+.+..... |.. .
T Consensus 90 ~~l--~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~----------~~~----------------~ 141 (321)
T PF08424_consen 90 ELL--FKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRS----------GRM----------------T 141 (321)
T ss_pred HHH--HHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhc----------ccc----------------c
Confidence 999 88999988775443333221 22455666777777664321100 000 0
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013398 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 347 (444)
........+..+ ..++..+...+...|-.+.|+..++-.++++
T Consensus 142 ~~~~~~~~e~~~-------l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 142 SHPDLPELEEFM-------LYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cccchhhHHHHH-------HHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 001111122211 2455666677777888888888888888876
No 273
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=1.5 Score=47.77 Aligned_cols=211 Identities=11% Similarity=0.018 Sum_probs=122.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013398 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (444)
Q Consensus 158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~ 237 (444)
-+.|++|..+|.+..+.|...+|+++|-++ ++|..|...-.+-.+.|.|++=++.+.-|-+-...|.--..+.
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi-- 1173 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELI-- 1173 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHH--
Confidence 456778888888888888888888888554 5667777777777888888888887777764123333222211
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH
Q 013398 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (444)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~ 317 (444)
..+.+.++..|-.++. ..|+. +.. -..|.-.+. .+.|+.|.-+|..+-
T Consensus 1174 --~AyAkt~rl~elE~fi------~gpN~----A~i-~~vGdrcf~-----------~~~y~aAkl~y~~vS-------- 1221 (1666)
T KOG0985|consen 1174 --FAYAKTNRLTELEEFI------AGPNV----ANI-QQVGDRCFE-----------EKMYEAAKLLYSNVS-------- 1221 (1666)
T ss_pred --HHHHHhchHHHHHHHh------cCCCc----hhH-HHHhHHHhh-----------hhhhHHHHHHHHHhh--------
Confidence 1233345554433332 22321 111 112322211 245555555554433
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC------------------------hHHHHHHHHHHHHccCHHHHHH
Q 013398 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN------------------------LKGWLLMARILSAQKRYEDAET 373 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------------------------~~~~~~la~~l~~~g~~~eA~~ 373 (444)
-|-.|+..+...|+|..|+...+||-...-.-. ++-+-.+-..|...|-|+|-+.
T Consensus 1222 -N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIs 1300 (1666)
T KOG0985|consen 1222 -NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELIS 1300 (1666)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHH
Confidence 467778888888888888888887743322100 1122234556777788888888
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013398 374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY 411 (444)
Q Consensus 374 ~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~ 411 (444)
.++.++.+.- .+-..+--+|.+|.+- +++.-.+++
T Consensus 1301 l~Ea~LGLER--AHMgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1301 LLEAGLGLER--AHMGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred HHHhhhchhH--HHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 8888887765 4545555566655443 344444433
No 274
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.55 E-value=0.0075 Score=56.43 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=64.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013398 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 326 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~ 398 (444)
-..+.|+.++|...|+.|+++.|+++ +++..+|.+....++.-+|=.+|-+|+..+| .|.+++.+++...
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p-~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP--~nseALvnR~RT~ 194 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNP-QILIEMGQFREMHNEIVEADQCYVKALTISP--GNSEALVNRARTT 194 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCH-HHHHHHhHHHHhhhhhHhhhhhhheeeeeCC--CchHHHhhhhccc
Confidence 45678999999999999999999996 9999999999999999999999999999999 8999998887643
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.55 E-value=0.8 Score=44.76 Aligned_cols=124 Identities=18% Similarity=0.056 Sum_probs=93.4
Q ss_pred HHhhHHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--------------------
Q 013398 294 RATRQAKALQALVSAARSTNM----RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-------------------- 349 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-------------------- 349 (444)
+.|+++-|...+.++. ..++ ..+.+.+.-+..+...|+..+|+..++..+.....
T Consensus 158 k~g~~~~A~~~l~~~~-~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T PF02259_consen 158 KAGNFQLALSALNRLF-QLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE 236 (352)
T ss_pred HCCCcHHHHHHHHHHh-ccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Confidence 4578899999999998 7652 25778888899999999999999999988881111
Q ss_pred -------C------ChHHHHHHHHHHHHc------cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH------
Q 013398 350 -------S------NLKGWLLMARILSAQ------KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL------ 404 (444)
Q Consensus 350 -------~------~~~~~~~la~~l~~~------g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~------ 404 (444)
. .+.++..+|.....+ +..++++..|.++++..| ....+|+..|......=+.
T Consensus 237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~k~~~~~a~~~~~~~~~~~~~~~ 314 (352)
T PF02259_consen 237 VISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP--SWEKAWHSWALFNDKLLESDPREKE 314 (352)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh--hHHHHHHHHHHHHHHHHHhhhhccc
Confidence 0 024566777777777 888999999999999999 7888998888877554222
Q ss_pred -----------HHHHHHHHHHHHHHHh
Q 013398 405 -----------KGAVETYTHLLAALQV 420 (444)
Q Consensus 405 -----------~~A~~~~~~al~l~~~ 420 (444)
..|+..|-+++.+.++
T Consensus 315 ~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 315 ESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 2367777777766654
No 276
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.54 E-value=0.13 Score=50.72 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC-C--CcHHHHHH
Q 013398 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-SNLKGWLLMARILSAQKRYEDAETILNAALDQTGK-W--EQGELLRT 393 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~-~--~~~~~~~~ 393 (444)
.+++.....+.+.|-+..|++.++-.+.+||+ ||..+.+.+-....+.++|+==+..++.......+ | .-+..-+.
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S 183 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFS 183 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHH
Confidence 34556667778889999999999999999998 76555666666666778888777777765542110 0 01245667
Q ss_pred HHHHHHHhCCH---------------HHHHHHHHHHHHHHHhhhh
Q 013398 394 KAKVQLVQGQL---------------KGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 394 la~~~~~~g~~---------------~~A~~~~~~al~l~~~~~~ 423 (444)
.+.++...++. ++|-..+.+|+...|.--.
T Consensus 184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 77788888888 8999999999988775443
No 277
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.53 E-value=0.015 Score=40.06 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013398 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL 399 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~ 399 (444)
++++.+|..+.++|+|++|..+++.+|+..| +|..+......+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP--~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEP--DNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--S-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHH
Confidence 5678899999999999999999999999999 88887776665543
No 278
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.52 E-value=0.0041 Score=36.77 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013398 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
+++.+|.++..+|++++|+..++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4445555555555555555555555555443
No 279
>PRK10941 hypothetical protein; Provisional
Probab=96.51 E-value=0.029 Score=52.86 Aligned_cols=76 Identities=16% Similarity=0.069 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013398 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~ 397 (444)
.+.+|=.+|.+.++++.|+.+.++.+.++|+++ .-|.-.|.++..+|.+..|+.-++..++..| +++.+-..+..+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp-~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P--~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDP-YEIRDRGLIYAQLDCEHVALSDLSYFVEQCP--EDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC--CchhHHHHHHHH
Confidence 345777888889999999999999999999985 8888889999999999999999999999998 776666555444
No 280
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.45 E-value=0.23 Score=43.80 Aligned_cols=83 Identities=22% Similarity=0.130 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHH
Q 013398 297 RQAKALQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (444)
Q Consensus 297 ~~~eA~~~~~~al~~~~P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~ 372 (444)
++++|+..++.++ . .|.|.. +-.+||.+...+|++++|+..+..... +......-...|.++..+|+-++|+
T Consensus 104 ~~d~A~aqL~~~l-~-~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar 179 (207)
T COG2976 104 NLDKAEAQLKQAL-A-QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEAR 179 (207)
T ss_pred cHHHHHHHHHHHH-c-cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHH
Confidence 4455555555554 2 222221 234566666666666666666554322 1111122345566666666666666
Q ss_pred HHHHHHHhhcC
Q 013398 373 TILNAALDQTG 383 (444)
Q Consensus 373 ~~~~~al~~~P 383 (444)
..|.+|+...+
T Consensus 180 ~ay~kAl~~~~ 190 (207)
T COG2976 180 AAYEKALESDA 190 (207)
T ss_pred HHHHHHHHccC
Confidence 66666666654
No 281
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.41 E-value=0.0042 Score=36.74 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC
Q 013398 196 ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (444)
Q Consensus 196 ~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~ 229 (444)
.+|+.+|.++...|++++|+..|++++ +.+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~--~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKAL--ELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHH--ccCCC
Confidence 456677777777777777777777777 66664
No 282
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.78 Score=45.97 Aligned_cols=221 Identities=14% Similarity=0.113 Sum_probs=144.2
Q ss_pred cCCHHHHHHHHHhhcCCC------CCCHH--------HHHHHHHHHHHCCCchHHHHHHHHhhc-CCCCCC-------Ch
Q 013398 174 AGDLSSLATQIEELLPGI------INRKE--------RYHILALCYYGAGEDLVALNLLRTLLS-GSEDPK-------CL 231 (444)
Q Consensus 174 ~g~~~~A~~~~~~al~~~------p~~~~--------~~~~la~~l~~~g~~~~A~~~~~~al~-~~~~P~-------~~ 231 (444)
.|-+++|..+-++++... |.... ..-++..+-.-.|++.+|+........ ....|. .+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 355666666666665331 21222 233456666778999999887766541 034555 23
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh
Q 013398 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (444)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~ 311 (444)
..++.+|..| ..-|.++.|...|..+.+..... .+.+.+..++++.|...++ +...|+-.= .
T Consensus 368 ~ih~LlGlys-~sv~~~enAe~hf~~a~k~t~~~--dl~a~~nlnlAi~YL~~~~--------------~ed~y~~ld-~ 429 (629)
T KOG2300|consen 368 QIHMLLGLYS-HSVNCYENAEFHFIEATKLTESI--DLQAFCNLNLAISYLRIGD--------------AEDLYKALD-L 429 (629)
T ss_pred HHHHHHhhHh-hhcchHHHHHHHHHHHHHhhhHH--HHHHHHHHhHHHHHHHhcc--------------HHHHHHHHH-h
Confidence 3445555444 34688999999999999975433 3456667788888877542 333333333 5
Q ss_pred hCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHccCHHHHHHHH
Q 013398 312 TNMRD----------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN------LKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 312 ~~P~~----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
+.|.| ..++|-.|...+.++++.||....++.++.. +.. +-.+..||.+....|+..|+...+
T Consensus 430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmv 508 (629)
T KOG2300|consen 430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMV 508 (629)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhcc
Confidence 66664 2356778888899999999999999999876 210 134567888999999999999999
Q ss_pred HHHHhhcCC-CCcHHHHH---HHHHHHHHhCC--HHHHHHHHHH
Q 013398 376 NAALDQTGK-WEQGELLR---TKAKVQLVQGQ--LKGAVETYTH 413 (444)
Q Consensus 376 ~~al~~~P~-~~~~~~~~---~la~~~~~~g~--~~~A~~~~~~ 413 (444)
+-++.+..+ +|.+..++ .+-.++...|+ .....+.|++
T Consensus 509 rpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 509 RPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred chHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 999876532 15444443 44567777887 5555555544
No 283
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.25 E-value=0.008 Score=38.76 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCC
Q 013398 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGF 48 (444)
Q Consensus 10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 48 (444)
+.++.+.|.+|...|++++|...+++++++.++.+..+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~H 40 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDH 40 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccc
Confidence 567899999999999999999999999998776554433
No 284
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.21 E-value=0.1 Score=43.15 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013398 316 DLSILYRLSLEYAEQR---KLNAAHYYAKMLLK-LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (444)
Q Consensus 316 ~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~-l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 391 (444)
..+..+++++++.... +..+.+.+++..++ -.|+..-++.+.|+.-+.+.|+|+.++.+++..++..| +|.++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~--~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP--NNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC--CcHHHH
Confidence 3567899999998764 56679999999996 66665457888999999999999999999999999999 787777
Q ss_pred HHHHHHHHH
Q 013398 392 RTKAKVQLV 400 (444)
Q Consensus 392 ~~la~~~~~ 400 (444)
-..-.+..+
T Consensus 109 ~Lk~~ied~ 117 (149)
T KOG3364|consen 109 ELKETIEDK 117 (149)
T ss_pred HHHHHHHHH
Confidence 666555443
No 285
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.18 E-value=0.9 Score=46.16 Aligned_cols=215 Identities=12% Similarity=0.068 Sum_probs=140.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHCC---Cc
Q 013398 150 RKVALKRIEWDPSILDHLSFAFSIAGD--------------LSSLATQIEELLPGIIN-RKERYHILALCYYGAG---ED 211 (444)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~--------------~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~g---~~ 211 (444)
.+.++.--+..+++|+.-+.-+...++ -+++..+|++++..--. +.-.++.++..-...- ++
T Consensus 268 yeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~ 347 (656)
T KOG1914|consen 268 YEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKE 347 (656)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchh
Confidence 345555568889999877766666666 78899999999875332 3444444444332222 25
Q ss_pred hHHHHHHHHhhc-CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc
Q 013398 212 LVALNLLRTLLS-GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT 290 (444)
Q Consensus 212 ~~A~~~~~~al~-~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~ 290 (444)
+.--..+.++++ ...+|+-+...++. ...+ .++++.++.+......+.. ..-+.+...++..-
T Consensus 348 ~~~~~~~~~ll~~~~~~~tLv~~~~mn--~irR-----~eGlkaaR~iF~kaR~~~r---~~hhVfVa~A~mEy------ 411 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLTLVYCQYMN--FIRR-----AEGLKAARKIFKKAREDKR---TRHHVFVAAALMEY------ 411 (656)
T ss_pred hhhHHHHHHHHhhhccCCceehhHHHH--HHHH-----hhhHHHHHHHHHHHhhccC---CcchhhHHHHHHHH------
Confidence 556677777773 13455544433322 1111 2444444444443322211 01122222222211
Q ss_pred hHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHccCH
Q 013398 291 DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL--EGGSNLKGWLLMARILSAQKRY 368 (444)
Q Consensus 291 ~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~~la~~l~~~g~~ 368 (444)
.-.++..-|...|+--+ +..+++|..-+..-..+...++-..|...|++++.- .|+...+.|..+-..-..-|+.
T Consensus 412 --~cskD~~~AfrIFeLGL-kkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 412 --YCSKDKETAFRIFELGL-KKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred --HhcCChhHHHHHHHHHH-HhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 12467789999999999 999999999888888899999999999999999986 6765557898888888888999
Q ss_pred HHHHHHHHHHHhhcC
Q 013398 369 EDAETILNAALDQTG 383 (444)
Q Consensus 369 ~eA~~~~~~al~~~P 383 (444)
.-.++.-++-....|
T Consensus 489 ~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHHhcc
Confidence 998888887776666
No 286
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=2.6 Score=46.10 Aligned_cols=288 Identities=14% Similarity=0.129 Sum_probs=175.9
Q ss_pred HHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCcc-c-------c---ccCccccCCCcHH
Q 013398 71 ELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNL-R-------S---QMGSSFVPRNNIE 139 (444)
Q Consensus 71 ~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~-~-------~---~~~~~~~~~~~~~ 139 (444)
..++..+-+.|=|+.+++++-.|..+. ++ .++-.+|+.......+..+ . + ..+.+.+..+-++
T Consensus 992 kAfMtadLp~eLIELLEKIvL~~S~Fs-e~-----~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 992 KAFMTADLPNELIELLEKIVLDNSVFS-EN-----RNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYE 1065 (1666)
T ss_pred HHHHhcCCcHHHHHHHHHHhcCCcccc-cc-----hhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHH
Confidence 356788899999999999876531111 11 1222222222222211110 0 1 1234455566677
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHH
Q 013398 140 EAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR 219 (444)
Q Consensus 140 eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~ 219 (444)
||...+ ++..-+..+.. ......+..+.|.+.-++. +.++.|..+|.+..+.|...+|+..|-
T Consensus 1066 EAF~if---------kkf~~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1066 EAFAIF---------KKFDMNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred HHHHHH---------HHhcccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 776654 22222333322 2334456777777766654 468999999999999999999999998
Q ss_pred HhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHH
Q 013398 220 TLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA 299 (444)
Q Consensus 220 ~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 299 (444)
++= ||.+. ...-.++ .+.|.+++-+.++.-+-+...... .-..|-.+|.+.+ +..
T Consensus 1129 kad----Dps~y---~eVi~~a-~~~~~~edLv~yL~MaRkk~~E~~------id~eLi~AyAkt~-----------rl~ 1183 (1666)
T KOG0985|consen 1129 KAD----DPSNY---LEVIDVA-SRTGKYEDLVKYLLMARKKVREPY------IDSELIFAYAKTN-----------RLT 1183 (1666)
T ss_pred hcC----CcHHH---HHHHHHH-HhcCcHHHHHHHHHHHHHhhcCcc------chHHHHHHHHHhc-----------hHH
Confidence 865 67643 2223333 457899999999988887653321 1111222333322 222
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013398 300 KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (444)
Q Consensus 300 eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al 379 (444)
-++.-+ ..|+.+. .-..|.-++..|.|+.|.-.|.. ..-|-.|+..+..+|+|+.|+..-++|-
T Consensus 1184 ----elE~fi--~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1184 ----ELEEFI--AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred ----HHHHHh--cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 223333 4566654 45788889999999999888853 3667889999999999999999888774
Q ss_pred hhcCCC--------C----------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 380 DQTGKW--------E----------------QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 380 ~~~P~~--------~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
...- | + +.+=+--+-..|...|-++|-+..++.+|.+...|-+
T Consensus 1248 s~kt-WK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1248 STKT-WKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred chhH-HHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH
Confidence 2210 1 0 1111233455667788888888888888877665544
No 287
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.17 E-value=0.16 Score=40.95 Aligned_cols=98 Identities=19% Similarity=0.057 Sum_probs=68.2
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHH
Q 013398 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR------------DLSILYRLSLEYAEQRKLNAAHYY 339 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~------------~~~a~~~lg~~~~~~g~~~~A~~~ 339 (444)
.+|..|+..-.+. +.+.+++|...++++. ..... |+-.+-.|+-++..+|+|++++..
T Consensus 8 ~aY~aLs~ae~ql---------~~g~~~eAa~s~r~AM-~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~s 77 (144)
T PF12968_consen 8 MAYMALSDAERQL---------QDGAYEEAAASCRKAM-EVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQS 77 (144)
T ss_dssp HHHHHHHHHHHHH---------HHT-HHHHHHHHHHHH-HHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHH---------HhhhHHHHHHHHHHHH-HHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 4555555544332 3477999999999998 76432 223445677788999999998777
Q ss_pred HHHHHh-------hcCCCChHHH----HHHHHHHHHccCHHHHHHHHHHHHh
Q 013398 340 AKMLLK-------LEGGSNLKGW----LLMARILSAQKRYEDAETILNAALD 380 (444)
Q Consensus 340 ~~~al~-------l~P~~~~~~~----~~la~~l~~~g~~~eA~~~~~~al~ 380 (444)
..++|. |+.+. ...| ++.+..+...|+.+||+..|+.+-+
T Consensus 78 A~~aL~YFNRRGEL~qde-GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 78 ADRALRYFNRRGELHQDE-GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHH--TTSTH-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccc-chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 776664 66665 3555 4678899999999999999998875
No 288
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.25 Score=48.36 Aligned_cols=100 Identities=9% Similarity=0.072 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC----HH
Q 013398 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR----YE 369 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~----~~ 369 (444)
...++-+.....++ +.+|++.-+|+...+++.+.+ ++..=+..++++++.||.+ ..+|...-.+.....+ ..
T Consensus 89 ~~ld~eL~~~~~~L-~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RN-fh~W~YRRfV~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 89 ALLDEELKYVESAL-KVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRN-FHAWHYRRFVVEQAERSRNLEK 166 (421)
T ss_pred HhhHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccc-ccchHHHHHHHHHHhcccccch
Confidence 34678889999999 999999999999999999887 4688999999999999999 4999877666655443 45
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013398 370 DAETILNAALDQTGKWEQGELLRTKAKVQL 399 (444)
Q Consensus 370 eA~~~~~~al~~~P~~~~~~~~~~la~~~~ 399 (444)
+=+.+..++|..++ .|..+|.++..++.
T Consensus 167 ~El~ftt~~I~~nf--SNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 167 EELEFTTKLINDNF--SNYSAWHYRSLLLS 194 (421)
T ss_pred hHHHHHHHHHhccc--hhhhHHHHHHHHHH
Confidence 66889999999999 89999999988876
No 289
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.09 E-value=0.0081 Score=53.98 Aligned_cols=61 Identities=20% Similarity=0.097 Sum_probs=56.6
Q ss_pred HHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH
Q 013398 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (444)
Q Consensus 170 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~ 232 (444)
.+.+.|+.+.|.+.|.+++.+.|+....|+.+|......|+++.|.+.|++++ +++|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L--~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL--ELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHH--cCCccccc
Confidence 45678999999999999999999999999999999999999999999999999 89998754
No 290
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.07 E-value=0.32 Score=47.30 Aligned_cols=119 Identities=15% Similarity=-0.008 Sum_probs=93.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH
Q 013398 303 QALVSAARSTNMRDLSILYRLSLEYAEQRK------------LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (444)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~------------~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e 370 (444)
..|.+.+ +-+|+|.++|..+....-..-. .+.-+.+|++||+.+|++ ...+..+-.+..+...-++
T Consensus 6 ~el~~~v-~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~-~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 6 AELNRRV-RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS-ERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHH-HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHH
Confidence 4678889 9999999999988766544322 467789999999999998 4887777777777788888
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhhhhhc
Q 013398 371 AETILNAALDQTGKWEQGELLRTKAKVQLV---QGQLKGAVETYTHLLAALQVQTKTF 425 (444)
Q Consensus 371 A~~~~~~al~~~P~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~l~~~~~~~~ 425 (444)
...-+++++..+| ++..+|...-..... .-.++.-...|.++|..........
T Consensus 84 l~~~we~~l~~~~--~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~ 139 (321)
T PF08424_consen 84 LAKKWEELLFKNP--GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR 139 (321)
T ss_pred HHHHHHHHHHHCC--CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc
Confidence 8999999999999 888888765444333 2357899999999998777665543
No 291
>PRK10941 hypothetical protein; Provisional
Probab=96.01 E-value=0.037 Score=52.16 Aligned_cols=73 Identities=21% Similarity=0.102 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013398 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (444)
Q Consensus 163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~ 237 (444)
...++=.++.+.++++.|+.+.++++.+.|+++.-+-..|.+|.++|.+..|..-++.-+ ..-|+++.+-...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl--~~~P~dp~a~~ik 255 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV--EQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH--HhCCCchhHHHHH
Confidence 344666788999999999999999999999999999999999999999999999999999 8999999876543
No 292
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.99 E-value=0.068 Score=53.20 Aligned_cols=142 Identities=13% Similarity=0.051 Sum_probs=87.6
Q ss_pred HHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHcCC---CcchhhhHHHHHhhh
Q 013398 204 CYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRA-LECLGD---GCDQMESTANCLLGI 279 (444)
Q Consensus 204 ~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~a-l~~~~~---~~~~~~~~a~~~lg~ 279 (444)
.|..+.+..-+..-.+.+. -...+.+.+.+..+...|.+ |++..|++.+-.. +...+. .+.-..-..|.++|.
T Consensus 215 ~llq~~~Lk~~krevK~vm--n~a~~s~~~l~LKsq~eY~~-gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 215 FLLQTRNLKLAKREVKHVM--NIAQDSSMALLLKSQLEYAH-GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHhhhhhh--hhcCCCcHHHHHHHHHHHHh-cchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 3455556666666666666 55556666666666666654 4555555443211 111111 000112345778888
Q ss_pred hhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh---------hCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013398 280 SLSAQSKVAITDFDRATRQAKALQALVSAARS---------TNM---------RDLSILYRLSLEYAEQRKLNAAHYYAK 341 (444)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~---------~~P---------~~~~a~~~lg~~~~~~g~~~~A~~~~~ 341 (444)
+.++. +.|.-++..|.+|+ + +.| ..-+++||.|..|...|+.-.|.++|.
T Consensus 292 Ih~~~-----------~~y~~~~~~F~kAL-~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~ 359 (696)
T KOG2471|consen 292 IHYQL-----------GCYQASSVLFLKAL-RNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQ 359 (696)
T ss_pred Eeeeh-----------hhHHHHHHHHHHHH-HHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHH
Confidence 87765 45667777777777 5 111 345677888888888888888888888
Q ss_pred HHHhhcCCCChHHHHHHHHH
Q 013398 342 MLLKLEGGSNLKGWLLMARI 361 (444)
Q Consensus 342 ~al~l~P~~~~~~~~~la~~ 361 (444)
+++..--.+| ..|..++.+
T Consensus 360 ~av~vfh~nP-rlWLRlAEc 378 (696)
T KOG2471|consen 360 KAVHVFHRNP-RLWLRLAEC 378 (696)
T ss_pred HHHHHHhcCc-HHHHHHHHH
Confidence 8888777776 888887765
No 293
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.92 E-value=0.081 Score=52.90 Aligned_cols=89 Identities=10% Similarity=0.090 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC-HHHHHHHHHHH
Q 013398 300 KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR-YEDAETILNAA 378 (444)
Q Consensus 300 eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~-~~eA~~~~~~a 378 (444)
.-...|++|+ ..-|.|+..|.+......+.+.+.+--..|.+++..+|+++ ..|..-|.-.+.-+. .+.|.+.+.++
T Consensus 89 rIv~lyr~at-~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~-dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRAT-NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNP-DLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCc-hhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 4466888999 88899999998877777777778899999999999999985 999988887777776 88888999999
Q ss_pred HhhcCCCCcHHHHH
Q 013398 379 LDQTGKWEQGELLR 392 (444)
Q Consensus 379 l~~~P~~~~~~~~~ 392 (444)
|..+| +++.+|.
T Consensus 167 LR~np--dsp~Lw~ 178 (568)
T KOG2396|consen 167 LRFNP--DSPKLWK 178 (568)
T ss_pred hhcCC--CChHHHH
Confidence 99999 7777664
No 294
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.91 E-value=0.014 Score=52.46 Aligned_cols=54 Identities=15% Similarity=0.037 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013398 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
++.+.|.+.|.+++ .+-|+....|+.+|....+.|+++.|.+.|++.++++|++
T Consensus 9 ~D~~aaaely~qal-~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 9 GDAEAAAELYNQAL-ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred CChHHHHHHHHHHh-hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 45555556666666 5666666666666655555666666666666666666554
No 295
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.90 E-value=0.24 Score=48.90 Aligned_cols=106 Identities=18% Similarity=0.096 Sum_probs=80.9
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc---------CC-----C------------CCCHH---HHHHHHH
Q 013398 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELL---------PG-----I------------INRKE---RYHILAL 203 (444)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al---------~~-----~------------p~~~~---~~~~la~ 203 (444)
++..+|...+.+..++.++..+|+++.|.+..+||| .+ + ++|-. +.+....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 468899999999999999999999999999999984 11 1 22222 4556688
Q ss_pred HHHHCCCchHHHHHHHHhhcCCCCCC-ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013398 204 CYYGAGEDLVALNLLRTLLSGSEDPK-CLPALLIASKICGEYPDLAEEGATFASRALE 260 (444)
Q Consensus 204 ~l~~~g~~~~A~~~~~~al~~~~~P~-~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~ 260 (444)
.+.+.|-+..|.+..+-.+ .+||+ ||...++....+.-+.++++-=+..++....
T Consensus 112 ~L~~RG~~rTAlE~~KlLl--sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLL--SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHhcCcHHHHHHHHHHHH--hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 8999999999999999999 99999 8876555545444456777655666555443
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.88 E-value=0.15 Score=43.80 Aligned_cols=110 Identities=14% Similarity=-0.034 Sum_probs=78.1
Q ss_pred HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013398 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~ 373 (444)
+.+..+++...+...- -+.|..++.-..-|+++...|++.+|+..++.+.+-.|..+ .+--.++.++..+|+.+= ..
T Consensus 22 ~~~~~~D~e~lL~ALr-vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p-~~kALlA~CL~~~~D~~W-r~ 98 (160)
T PF09613_consen 22 RLGDPDDAEALLDALR-VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP-YAKALLALCLYALGDPSW-RR 98 (160)
T ss_pred ccCChHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh-HHHHHHHHHHHHcCChHH-HH
Confidence 4567788888888887 89999999999999999999999999999999888888875 788888999988887541 12
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 013398 374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVET 410 (444)
Q Consensus 374 ~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~ 410 (444)
+-+.+++..| ++.+.. +...+....+...|...
T Consensus 99 ~A~evle~~~---d~~a~~-Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 99 YADEVLESGA---DPDARA-LVRALLARADLEPAHEA 131 (160)
T ss_pred HHHHHHhcCC---ChHHHH-HHHHHHHhccccchhhh
Confidence 2344555554 333333 33333444444444443
No 297
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=2.3 Score=42.77 Aligned_cols=121 Identities=17% Similarity=0.045 Sum_probs=83.1
Q ss_pred HhhHHHHHHHHHHHHHh---hCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChH--HHHHHHHHH
Q 013398 295 ATRQAKALQALVSAARS---TNMR-------DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK--GWLLMARIL 362 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~---~~P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~--~~~~la~~l 362 (444)
.|++.+|++....+. . .-|. .+..++-+|.-....|.++.|...|..|+++-..-... +-.++|.+|
T Consensus 336 ~~~~~~al~~i~dm~-~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMK-NWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred hCCHHHHHHHHHHHH-HHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 467777777665554 4 3344 45567788888788899999999999998876542122 345778889
Q ss_pred HHccCHHHHHHHHHHHHhhcCCCC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013398 363 SAQKRYEDAETILNAALDQTGKWE--------QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 363 ~~~g~~~eA~~~~~~al~~~P~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
...|+-++--+..+. +.|.+. -..+++..|.....++++.||....++.|++..
T Consensus 415 L~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman 476 (629)
T KOG2300|consen 415 LRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN 476 (629)
T ss_pred HHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 888876553333332 345111 135677788888899999999999999988773
No 298
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.85 E-value=0.88 Score=39.50 Aligned_cols=49 Identities=14% Similarity=0.061 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 013398 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363 (444)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~ 363 (444)
+|--..+.-.||..-++.|++.+|...|.+... +...| ....+.+.+.+
T Consensus 163 n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~ap-rnirqRAq~ml 211 (221)
T COG4649 163 NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAP-RNIRQRAQIML 211 (221)
T ss_pred ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCc-HHHHHHHHHHH
Confidence 333344556667777777777777777777655 44433 45555555443
No 299
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.82 E-value=0.081 Score=42.25 Aligned_cols=45 Identities=16% Similarity=0.032 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013398 371 AETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (444)
Q Consensus 371 A~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 417 (444)
++.++.++..+.| +.+..++.+|.-+.-..-|++++.-.+++|.+
T Consensus 63 sve~~s~a~~Lsp--~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 SVECFSRAVELSP--DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHhccCh--hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6778888888888 77777777777655555666676666666654
No 300
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.72 E-value=0.065 Score=54.47 Aligned_cols=122 Identities=15% Similarity=0.074 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHH--HHH-HHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013398 299 AKALQALVSAARSTNMRDLSIL--YRL-SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 299 ~eA~~~~~~al~~~~P~~~~a~--~~l-g~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
++-+..+-..+ -..|. ...| .|+ |+-+..+|+...|++++.+|+-+.|........+|+.++...|-.-+|-..+
T Consensus 588 e~e~~~~~~~~-~~~~~-~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l 665 (886)
T KOG4507|consen 588 EEEIGSFLFHA-INKPN-APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLL 665 (886)
T ss_pred HHHHHHHHHHH-hcCCC-CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHH
Confidence 34455555544 33444 3344 233 4444557899999999999998888764467788899998888888899999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013398 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 376 ~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
.+++.+.. .-+..++.+|..+..+.+.+.|+++++.++++.|+..+-
T Consensus 666 ~q~l~~~~--sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 666 LQALAINS--SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred HHHHhhcc--cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhh
Confidence 99988876 567778888999999999999999999999888776653
No 301
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.64 E-value=0.012 Score=59.60 Aligned_cols=100 Identities=15% Similarity=0.012 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013398 296 TRQAKALQALVSAARSTNMRDLS-ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~ 374 (444)
|+...|++++..|+ -..|.... .+.+|+.++..-|-.-+|-..+.+++.++-..| -.++.+|..+..+.+.+.|++.
T Consensus 621 gn~~~a~~cl~~a~-~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep-l~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 621 GNSTFAIACLQRAL-NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP-LTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred CCcHHHHHHHHHHh-ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc-hHHHhcchhHHHHhhhHHHHHH
Confidence 77789999999999 88887654 568999999999999999999999999997776 7888999999999999999999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHH
Q 013398 375 LNAALDQTGKWEQGELLRTKAKVQL 399 (444)
Q Consensus 375 ~~~al~~~P~~~~~~~~~~la~~~~ 399 (444)
++.|++.+| ++.+....+-.+-.
T Consensus 699 ~~~a~~~~~--~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLTT--KCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcCC--CChhhHHHHHHHHH
Confidence 999999999 78887766655544
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.45 E-value=0.48 Score=40.66 Aligned_cols=83 Identities=12% Similarity=-0.060 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013398 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~ 398 (444)
.+..+..+-...++.+++...+...-.+.|..+ +.-..-|+++...|++.+|+..++.+.+..| ..+.+--.++.++
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~-e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~--~~p~~kALlA~CL 88 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFP-ELDLFDGWLHIVRGDWDDALRLLRELEERAP--GFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHhCCHHHHHHHHHHHhccCC--CChHHHHHHHHHH
Confidence 344445555567799999999999999999995 9999999999999999999999999988888 7777667777777
Q ss_pred HHhCCH
Q 013398 399 LVQGQL 404 (444)
Q Consensus 399 ~~~g~~ 404 (444)
..+|+.
T Consensus 89 ~~~~D~ 94 (160)
T PF09613_consen 89 YALGDP 94 (160)
T ss_pred HHcCCh
Confidence 777654
No 303
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.33 E-value=2.6 Score=43.50 Aligned_cols=230 Identities=12% Similarity=-0.062 Sum_probs=150.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHh
Q 013398 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICG 242 (444)
Q Consensus 163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~ 242 (444)
.|......-...|+++...-.|++++--...+.+.|++.+.-....|+..-|-.++..+.+ -.-|+-+..+++.+.++
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~-i~~k~~~~i~L~~a~f~- 376 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACK-IHVKKTPIIHLLEARFE- 376 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh-hcCCCCcHHHHHHHHHH-
Confidence 5555555666789999999999999999999999999999999999999999999999985 46788888888878776
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHH---HHHHHHHHhhCCCCHHH
Q 013398 243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKAL---QALVSAARSTNMRDLSI 319 (444)
Q Consensus 243 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~---~~~~~al~~~~P~~~~a 319 (444)
...|+++.|...+++..+..|.- ........+.-+ +.|..+.+. +.+.... ..-.+...
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~----v~~~l~~~~~e~------------r~~~~~~~~~~~~l~s~~~--~~~~~~~i 438 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGL----VEVVLRKINWER------------RKGNLEDANYKNELYSSIY--EGKENNGI 438 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCch----hhhHHHHHhHHH------------HhcchhhhhHHHHHHHHhc--ccccCcch
Confidence 45689999999999999977321 111222222222 334455555 3333332 33333333
Q ss_pred H----HHHHHHH-HHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhhcCCCCcHH
Q 013398 320 L----YRLSLEY-AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK-----RYEDAETILNAALDQTGKWEQGE 389 (444)
Q Consensus 320 ~----~~lg~~~-~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g-----~~~eA~~~~~~al~~~P~~~~~~ 389 (444)
. ...+... .-.++.+.|...+.+++...|++ ...|..+-.+...++ ++-+-+....-.....+ ++..
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~-k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~--~~~~ 515 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDILPDC-KVLYLELIRFELIQPSGREYDLLEPIDWKELKMLIDF--DDSR 515 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc-HHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhccc--cccc
Confidence 3 2333332 33579999999999999999998 488888877777665 22233322222223334 4444
Q ss_pred HHHHH-HHHHHHhCCHHHHHHHHHHHH
Q 013398 390 LLRTK-AKVQLVQGQLKGAVETYTHLL 415 (444)
Q Consensus 390 ~~~~l-a~~~~~~g~~~~A~~~~~~al 415 (444)
..-.+ -.-..-.|....+.+.-+..+
T Consensus 516 ~~~~k~~ef~e~~g~~~~~~~~~~~~l 542 (577)
T KOG1258|consen 516 SSTDKYIEFLEWFGIDHKGAQDERPHL 542 (577)
T ss_pred cchHHHHHHHHhccchhHhHhhchHHH
Confidence 33333 233334455555555544443
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.21 E-value=0.045 Score=35.07 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013398 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l 346 (444)
.++.+||.+|..+|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34555555555556666666555555554
No 305
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.13 E-value=0.11 Score=52.00 Aligned_cols=84 Identities=12% Similarity=-0.027 Sum_probs=73.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC-chHHHHHHHHhhcCCCCC
Q 013398 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE-DLVALNLLRTLLSGSEDP 228 (444)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~-~~~A~~~~~~al~~~~~P 228 (444)
++.++.+.+.|+..|.....-..+.+.+.+--..|.+++..+|++++.|..-|.=.+..+. .+.|...|.++| +.+|
T Consensus 94 yr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL--R~np 171 (568)
T KOG2396|consen 94 YRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL--RFNP 171 (568)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh--hcCC
Confidence 4556677889999999887766677779999999999999999999999999998888887 899999999999 9999
Q ss_pred CChHHHH
Q 013398 229 KCLPALL 235 (444)
Q Consensus 229 ~~~~a~~ 235 (444)
+++..+.
T Consensus 172 dsp~Lw~ 178 (568)
T KOG2396|consen 172 DSPKLWK 178 (568)
T ss_pred CChHHHH
Confidence 9998764
No 306
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.08 E-value=0.13 Score=51.70 Aligned_cols=86 Identities=16% Similarity=0.060 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHH
Q 013398 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ---RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~ 372 (444)
+....|+..|.+++ +.-|+....+.+.+.++.+. |+.-.|+..+-.|+++||-. ..+|+.|+.++..++++.+|+
T Consensus 388 ~~~~~~i~~~s~a~-q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 388 SIVSGAISHYSRAI-QYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred HHHHHHHHHHHHHh-hhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHHhhHHHhh
Confidence 34578999999999 99999999999999888875 57778999999999999998 699999999999999999999
Q ss_pred HHHHHHHhhcC
Q 013398 373 TILNAALDQTG 383 (444)
Q Consensus 373 ~~~~~al~~~P 383 (444)
.+-..+...+|
T Consensus 466 ~~~~alq~~~P 476 (758)
T KOG1310|consen 466 SCHWALQMSFP 476 (758)
T ss_pred hhHHHHhhcCc
Confidence 99988888888
No 307
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.95 E-value=0.2 Score=45.64 Aligned_cols=85 Identities=12% Similarity=0.120 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHhh----CCCC---HHHHHHHHHHHHHcCCHH-------HHHHHHHHHHhhcCC-----CChHHHH
Q 013398 296 TRQAKALQALVSAARST----NMRD---LSILYRLSLEYAEQRKLN-------AAHYYAKMLLKLEGG-----SNLKGWL 356 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~----~P~~---~~a~~~lg~~~~~~g~~~-------~A~~~~~~al~l~P~-----~~~~~~~ 356 (444)
..+++|++.|.-|+ -. .+++ +..+..+||+|..+|+.+ .|++.|.++++-... +.....+
T Consensus 91 Rt~~~ai~~YkLAl-l~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 91 RTLEEAIESYKLAL-LCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 45667777666554 21 1111 234455666666666532 344444444432211 0013444
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhh
Q 013398 357 LMARILSAQKRYEDAETILNAALDQ 381 (444)
Q Consensus 357 ~la~~l~~~g~~~eA~~~~~~al~~ 381 (444)
.+|.+..+.|++++|+.+|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 5555555555555555555555544
No 308
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.95 E-value=4.5 Score=40.44 Aligned_cols=241 Identities=10% Similarity=0.013 Sum_probs=146.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC
Q 013398 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (444)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~ 229 (444)
.+.++.-.|-.+++|+....-+...++-+.|...-+++++..|. .++.++..+...++-++-..+|+++++ .+.-.
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q-~L~r~ 366 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ-DLKRK 366 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH-HHHHH
Confidence 35556666888899998888888889999999988888877776 777888888888888777788888872 11100
Q ss_pred ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH-HhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHH
Q 013398 230 CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC-LLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (444)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~-~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a 308 (444)
... .-+.+.-...|+++-.-+..-+-+.. ...+|. .+..+. |..-...|...|-++
T Consensus 367 ys~---~~s~~~s~~D~N~e~~~Ell~kr~~k--------~t~v~C~~~N~v~------------r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 367 YSM---GESESASKVDNNFEYSKELLLKRINK--------LTFVFCVHLNYVL------------RKRGLEAARKLFIKL 423 (660)
T ss_pred Hhh---hhhhhhccccCCccccHHHHHHHHhh--------hhhHHHHHHHHHH------------HHhhHHHHHHHHHHH
Confidence 000 00000000111111000000000000 011111 111111 223356777788877
Q ss_pred HHhhCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc
Q 013398 309 ARSTNMRDLSILYRLS-LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ 387 (444)
Q Consensus 309 l~~~~P~~~~a~~~lg-~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~ 387 (444)
- +..=-.++++..-| .-+.-+|++..|-..|+-.+...||++ ..-...-..+...++-..|.+.|+++++.-.+..-
T Consensus 424 r-k~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~-~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~ 501 (660)
T COG5107 424 R-KEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDST-LYKEKYLLFLIRINDEENARALFETSVERLEKTQL 501 (660)
T ss_pred h-ccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCch-HHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh
Confidence 6 44324444444333 335567899999999999999999874 55455556677788888999999988865431122
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013398 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
..+|--.-.-...-|+...+...=++..++.|
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 45666666666777888877777777777766
No 309
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=1.1 Score=46.06 Aligned_cols=65 Identities=15% Similarity=0.005 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHhhcCCCCCCHHHHHH--HHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013398 174 AGDLSSLATQIEELLPGIINRKERYHI--LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (444)
Q Consensus 174 ~g~~~~A~~~~~~al~~~p~~~~~~~~--la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (444)
.|....++..+..-+.++|.+++.... +...+...++...+...+..++ ..+|++..++.+++..
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~L~~a 110 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPL--SVNPENCPAVQNLAAA 110 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhH--hcCcccchHHHHHHHH
Confidence 344444666666666777777766433 3666666677767777777777 6777776666555443
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.56 E-value=0.52 Score=39.83 Aligned_cols=74 Identities=18% Similarity=0.053 Sum_probs=52.4
Q ss_pred HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHH
Q 013398 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYE 369 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~ 369 (444)
+.++.+++...+...- -+.|+.+++-..-|+++...|++.+|+..++...+-.|..+ -+--+++.++..+|+.+
T Consensus 22 ~~~d~~D~e~lLdALr-vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p-~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALR-VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP-YGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHH-HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch-HHHHHHHHHHHhcCChH
Confidence 3456667777776666 77788888877888888888888888888877777666654 56666677776666543
No 311
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=1.7 Score=44.25 Aligned_cols=67 Identities=19% Similarity=0.012 Sum_probs=48.1
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013398 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK----ERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
..+.|+++....+-+..+...|+.+.|+..++..++ +.-- --++.+|.++.-+-+|..|-..+....
T Consensus 260 ~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 260 RKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred HHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 355677777777778888888887788888887777 2221 234567777777788888888888877
No 312
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.93 Score=44.57 Aligned_cols=170 Identities=15% Similarity=0.054 Sum_probs=114.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCc--hHHH
Q 013398 150 RKVALKRIEWDPSILDHLSFAFSI------------AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGED--LVAL 215 (444)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~--~~A~ 215 (444)
...++..+|+...+|+..-.++.. +.-.++-+...+.+++.+|+...+|+.+.-++.+.+.. ..=+
T Consensus 52 t~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL 131 (421)
T KOG0529|consen 52 TSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTEL 131 (421)
T ss_pred HHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHH
Confidence 355678888888877755443332 12456667888999999999999999999999988754 6778
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhh-hhhhch
Q 013398 216 NLLRTLLSGSEDPKCLPALLIASKIC---GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS-KVAITD 291 (444)
Q Consensus 216 ~~~~~al~~~~~P~~~~a~~~~~~~~---~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~-~~~~~~ 291 (444)
+...+++ +.||.|..++.+.--+. -...+...+=+.+.+++|..... +..||.+....+...- +.....
T Consensus 132 ~lcek~L--~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfS-----NYsaWhyRs~lL~~l~~~~~~g~ 204 (421)
T KOG0529|consen 132 QLCEKAL--KQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFS-----NYSAWHYRSLLLSTLHPKEADGN 204 (421)
T ss_pred HHHHHHH--hcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccch-----hhhHHHHHHHHHHHhccccccCc
Confidence 9999999 89999988875433222 12223356778888999884222 2457777766655321 100000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013398 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEY 327 (444)
Q Consensus 292 ~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~ 327 (444)
.........-++....|+ -.||+|..+|++.=+.+
T Consensus 205 ~~~~~~l~sEle~v~sai-FTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 205 FMPKELLQSELEMVHSAI-FTDPEDQSCWFYHRWLL 239 (421)
T ss_pred cCCHHHHHHHHHHHHHHH-hcCccccceeeehHHhh
Confidence 001123456678888999 99999999997754443
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.47 E-value=0.2 Score=49.87 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013398 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
|+.-.|-.-...++ +..|.+|......+.+....|.|+.|...+.-+-.+-..-. .+..-+-..+.++||+++|...-
T Consensus 303 gd~~aas~~~~~~l-r~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~-~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 303 GDIIAASQQLFAAL-RNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD-STLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred cCHHHHHHHHHHHH-HhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc-hHHHHHHHhhhchhhHHHHHHHH
Confidence 56677788888899 99999999999999999999999999998877755444332 45555556778899999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 376 ~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
.-.+...- +++++...-+..-..+|-+|++.-.|++++.+.|..+
T Consensus 381 ~~~l~~ei--e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 381 EMMLSNEI--EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHhcccc--CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 88886655 6677777777777889999999999999999988544
No 314
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.47 E-value=0.52 Score=42.94 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=57.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCH-------HHHHHHHHhhcCCCC------CCHHHHH
Q 013398 135 RNNIEEAILLLMILLRKVALKRIEWD--PSILDHLSFAFSIAGDL-------SSLATQIEELLPGII------NRKERYH 199 (444)
Q Consensus 135 ~~~~~eAi~~l~~~~~~~~l~~~p~~--~~~~~~lg~~l~~~g~~-------~~A~~~~~~al~~~p------~~~~~~~ 199 (444)
...+++|+..+..++.-..+...+.. ...+..++-+|...|+. ..|.+.|++++.... +.....|
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 34678888877555433332322222 34667778888888884 445556666654332 2346777
Q ss_pred HHHHHHHHCCCchHHHHHHHHhh
Q 013398 200 ILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 200 ~la~~l~~~g~~~~A~~~~~~al 222 (444)
.+|.+..+.|++++|...|.+++
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 78888888888888888888888
No 315
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=94.47 E-value=1.4 Score=42.17 Aligned_cols=192 Identities=15% Similarity=0.076 Sum_probs=96.2
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 013398 178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASR 257 (444)
Q Consensus 178 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~ 257 (444)
++|+..-+-...+-|+.|+++-.++.+++..-+...=...=-..+ -+...+...| ..+..+++.....+
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~v--lL~dQDr~lW---------~r~lI~eg~all~r 281 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPV--LLEDQDRSLW---------DRALIDEGLALLDR 281 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCee--eccccchhhh---------hHHHHHHHHHHHHH
Confidence 566666666666677777777666666655433222000000001 1111121111 12334577777777
Q ss_pred HHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 013398 258 ALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAH 337 (444)
Q Consensus 258 al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~ 337 (444)
++..-.+.+. .....+..++......+ ..++. +|..+=.++ ..--.+|-+-.|.+.+..+..-.+.++
T Consensus 282 A~~~~~pGPY----qlqAAIaa~HA~a~~ae------dtDW~-~I~aLYdaL-~~~apSPvV~LNRAVAla~~~Gp~agL 349 (415)
T COG4941 282 ALASRRPGPY----QLQAAIAALHARARRAE------DTDWP-AIDALYDAL-EQAAPSPVVTLNRAVALAMREGPAAGL 349 (415)
T ss_pred HHHcCCCChH----HHHHHHHHHHHhhcccC------CCChH-HHHHHHHHH-HHhCCCCeEeehHHHHHHHhhhHHhHH
Confidence 7764333321 11111222221111100 11233 333333344 344445666667777777666677777
Q ss_pred HHHHHHHhh---cCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013398 338 YYAKMLLKL---EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK 396 (444)
Q Consensus 338 ~~~~~al~l---~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~ 396 (444)
...+...+- +.-+ ..|-..|.++..+|+.+||...|++|+.+.+ +..+..+.+..
T Consensus 350 a~ve~L~~~~~L~gy~--~~h~~RadlL~rLgr~~eAr~aydrAi~La~--~~aer~~l~~r 407 (415)
T COG4941 350 AMVEALLARPRLDGYH--LYHAARADLLARLGRVEEARAAYDRAIALAR--NAAERAFLRQR 407 (415)
T ss_pred HHHHHhhccccccccc--ccHHHHHHHHHHhCChHHHHHHHHHHHHhcC--ChHHHHHHHHH
Confidence 776665542 2111 4555667777777888888888888887777 55555554443
No 316
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.46 E-value=0.28 Score=40.60 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013398 296 TRQAKALQALVSAARS-TNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~-~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (444)
.+..+.+..++..+ + -+|.. -+-.|+|+..+++.|+|++++.+++..++..|+++ ++.-+.
T Consensus 49 ~dv~~GI~iLe~l~-~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~-Qa~~Lk 111 (149)
T KOG3364|consen 49 EDVQEGIVILEDLL-KSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR-QALELK 111 (149)
T ss_pred HHHHHhHHHHHHHh-hhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH-HHHHHH
Confidence 45678999999999 6 44443 46789999999999999999999999999999995 766543
No 317
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.43 E-value=2.4 Score=36.93 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhCc
Q 013398 65 AVELLPELWKLADAPRETIMSYRRALLP 92 (444)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~~y~~aL~~ 92 (444)
+..+.+.+..+.|+..+|+..|..+-.-
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 5666777888889999999999887665
No 318
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.33 E-value=3.6 Score=38.37 Aligned_cols=208 Identities=13% Similarity=0.160 Sum_probs=123.4
Q ss_pred cCCHHHHHHHHHhhcCCCCCCHH----HHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHH
Q 013398 174 AGDLSSLATQIEELLPGIINRKE----RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE 249 (444)
Q Consensus 174 ~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~ 249 (444)
..++++|+..|++++++.|+..+ +.-+.-.+.+++|++++-...|++.+ .+. ...+- .+..+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL----------TYI-kSAVT---rNySE 105 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL----------TYI-KSAVT---RNYSE 105 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH----------HHH-HHHHh---ccccH
Confidence 34889999999999999887765 34456677888888888888888888 122 11111 12222
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHH----HHHH
Q 013398 250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILY----RLSL 325 (444)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~----~lg~ 325 (444)
..+...-..+.. + -+++.. ..-++..+++++ +..|-..|+ .||.
T Consensus 106 KsIN~IlDyiSt---S---------~~m~LL--------------Q~FYeTTL~ALk------dAKNeRLWFKTNtKLgk 153 (440)
T KOG1464|consen 106 KSINSILDYIST---S---------KNMDLL--------------QEFYETTLDALK------DAKNERLWFKTNTKLGK 153 (440)
T ss_pred HHHHHHHHHHhh---h---------hhhHHH--------------HHHHHHHHHHHH------hhhcceeeeeccchHhh
Confidence 222222111110 0 000000 011222232222 333445554 7899
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCC-----------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH-
Q 013398 326 EYAEQRKLNAAHYYAKMLLKLEGGSN-----------LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT- 393 (444)
Q Consensus 326 ~~~~~g~~~~A~~~~~~al~l~P~~~-----------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~- 393 (444)
++...+.+.+-.+.+++.-.-..... .+.|-.--.+|..+++-..-...|++++....-..++.++-.
T Consensus 154 l~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvI 233 (440)
T KOG1464|consen 154 LYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVI 233 (440)
T ss_pred hheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHH
Confidence 99988888777666666543222110 133444456788888888888899999976431013333322
Q ss_pred ---HHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCccch
Q 013398 394 ---KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF 431 (444)
Q Consensus 394 ---la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~ 431 (444)
-|....+.|++++|-..|=.|+. +++.+|++.++
T Consensus 234 RECGGKMHlreg~fe~AhTDFFEAFK----NYDEsGspRRt 270 (440)
T KOG1464|consen 234 RECGGKMHLREGEFEKAHTDFFEAFK----NYDESGSPRRT 270 (440)
T ss_pred HHcCCccccccchHHHHHhHHHHHHh----cccccCCcchh
Confidence 24566788999999988888774 67789999887
No 319
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.29 E-value=4.8 Score=37.86 Aligned_cols=129 Identities=9% Similarity=-0.076 Sum_probs=63.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh---------------cCCCCCCChHHHHHHHHHHhcCCCCHHHHHH
Q 013398 189 PGIINRKERYHILALCYYGAGEDLVALNLLRTLL---------------SGSEDPKCLPALLIASKICGEYPDLAEEGAT 253 (444)
Q Consensus 189 ~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al---------------~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~ 253 (444)
...-++++.|..+|..|++.|++.+|..+|-.+- . .-.|.....+...+-+.+--.++...|..
T Consensus 84 ~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~-~~~~~e~dlfi~RaVL~yL~l~n~~~A~~ 162 (260)
T PF04190_consen 84 SYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWST-KGYPSEADLFIARAVLQYLCLGNLRDANE 162 (260)
T ss_dssp S-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHH-HTSS--HHHHHHHHHHHHHHTTBHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHH-hcCCcchhHHHHHHHHHHHHhcCHHHHHH
Confidence 3344678888888888888888888887764321 1 33455555444444444444677777777
Q ss_pred HHHHHHHH----cCC---------CcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013398 254 FASRALEC----LGD---------GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (444)
Q Consensus 254 ~~~~al~~----~~~---------~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~ 320 (444)
.+...++. .|. ...+...-.++.+-.|-.. ....+..-.+.|+..+ +.||.-...+
T Consensus 163 ~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~----------~~~~F~~L~~~Y~~~L-~rd~~~~~~L 231 (260)
T PF04190_consen 163 LFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERD----------NLPLFKKLCEKYKPSL-KRDPSFKEYL 231 (260)
T ss_dssp HHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-----------HHHHHHHHHHTHH----HHHHTHHHH
T ss_pred HHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcC----------cHHHHHHHHHHhCccc-cccHHHHHHH
Confidence 76666654 111 0111111222222222211 0123445555666666 6666666677
Q ss_pred HHHHHHHHH
Q 013398 321 YRLSLEYAE 329 (444)
Q Consensus 321 ~~lg~~~~~ 329 (444)
..+|..|.-
T Consensus 232 ~~IG~~yFg 240 (260)
T PF04190_consen 232 DKIGQLYFG 240 (260)
T ss_dssp HHHHHHHH-
T ss_pred HHHHHHHCC
Confidence 777777664
No 320
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.20 E-value=0.15 Score=31.93 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhcCC
Q 013398 318 SILYRLSLEYAEQRKLNAAHYY--AKMLLKLEGG 349 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~--~~~al~l~P~ 349 (444)
+.++.+|..+..+|++++|++. |+-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4566677777777777777777 4466666664
No 321
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.08 E-value=0.35 Score=37.70 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 390 ~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
+..++|.+....|++++|+..+++++++.++..+
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 3444555555555555555555555555554443
No 322
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.05 E-value=9.9 Score=40.56 Aligned_cols=367 Identities=14% Similarity=0.055 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHhhhhcccchHHHHHHHHHHHH----HHHhhhcCCCCCCCCccccHHHHH-HHHHHHHHHHHH-HhCCh
Q 013398 6 ISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILD----IVESSFAEGFPENLGADCKLQETL-NRAVELLPELWK-LADAP 79 (444)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~----~~~~~~~~~~~~~~~~~~~l~~~~-~~a~~~l~~~~~-~~g~~ 79 (444)
+--++|-+..++-..-..-+-++-.+.|.+.|. -.+....+..+. +.. ..+..++|.+++ ...++
T Consensus 6 ll~lAeey~~~A~~~~~~~~~~~~l~~Y~kLI~~ai~CL~~~~~~~~l~---------p~~ea~~~l~la~iL~~eT~n~ 76 (608)
T PF10345_consen 6 LLSLAEEYLEKAHSLATKVKSEEQLKQYYKLIATAIKCLEAVLKQFKLS---------PRQEARVRLRLASILLEETENL 76 (608)
T ss_pred HHHHHHHHHHHhHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhccCCCC---------HHHHHHHHHHHHHHHHHHcCCH
Confidence 334566666666555444455566666665443 222222111111 111 245556666655 89999
Q ss_pred HHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCC
Q 013398 80 RETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEW 159 (444)
Q Consensus 80 ~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~ 159 (444)
++|+.++.+++.+... +. ...+.... ..++. .++...+.. .|...+...+.. ....+.
T Consensus 77 ~~Ae~~L~k~~~l~~~--~~-~~d~k~~~-~~ll~---------------~i~~~~~~~-~a~~~l~~~I~~--~~~~~~ 134 (608)
T PF10345_consen 77 DLAETYLEKAILLCER--HR-LTDLKFRC-QFLLA---------------RIYFKTNPK-AALKNLDKAIED--SETYGH 134 (608)
T ss_pred HHHHHHHHHHHHhccc--cc-hHHHHHHH-HHHHH---------------HHHHhcCHH-HHHHHHHHHHHH--HhccCc
Confidence 9999999999887311 11 11111111 11111 112222222 254443221111 111233
Q ss_pred CHHHHH--HH-HHHHHhcCCHHHHHHHHHhhcCCC--CCCHHHHHH----HHHHHHHCCCchHHHHHHHHhhcC--C--C
Q 013398 160 DPSILD--HL-SFAFSIAGDLSSLATQIEELLPGI--INRKERYHI----LALCYYGAGEDLVALNLLRTLLSG--S--E 226 (444)
Q Consensus 160 ~~~~~~--~l-g~~l~~~g~~~~A~~~~~~al~~~--p~~~~~~~~----la~~l~~~g~~~~A~~~~~~al~~--~--~ 226 (444)
....|. .+ ...+...+++..|++.++...... ++++.+... -|.++...+..++++...++++.. . .
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~ 214 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL 214 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence 333332 22 222222379999999999988775 455544333 377778888889999998887410 1 1
Q ss_pred CCC----ChHHHHHHHHHH-hcCCCCHHHHHH---HHHHHHHHcCCCc-------c------------------------
Q 013398 227 DPK----CLPALLIASKIC-GEYPDLAEEGAT---FASRALECLGDGC-------D------------------------ 267 (444)
Q Consensus 227 ~P~----~~~a~~~~~~~~-~~~~~~~~eA~~---~~~~al~~~~~~~-------~------------------------ 267 (444)
+|+ ...++..+..++ .-..|+.+.+.. .++..++...... +
T Consensus 215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl 294 (608)
T PF10345_consen 215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWL 294 (608)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeec
Confidence 222 233444443332 223455444444 4444444321110 0
Q ss_pred ---hhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC------CCCH-------------------HH
Q 013398 268 ---QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN------MRDL-------------------SI 319 (444)
Q Consensus 268 ---~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~------P~~~-------------------~a 319 (444)
.....+|+.-|.+... .+..++|.+.++++++.++ |..+ ..
T Consensus 295 ~~~~l~~L~y~lS~l~~~~-----------~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~ 363 (608)
T PF10345_consen 295 PKEELYALVYFLSGLHNLY-----------KGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYL 363 (608)
T ss_pred CHHHHHHHHHHHHHHHHhh-----------ccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHH
Confidence 0111222222332222 1223355555555441111 1111 13
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--------ChHHHHHHHHHHHHccCHHHHHHHHH--------HHHhhcC
Q 013398 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS--------NLKGWLLMARILSAQKRYEDAETILN--------AALDQTG 383 (444)
Q Consensus 320 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--------~~~~~~~la~~l~~~g~~~eA~~~~~--------~al~~~P 383 (444)
.++.+++..-.+++..|....+.+....... ....++..|..+...|+.+.|+.+|. .+....+
T Consensus 364 ~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~ 443 (608)
T PF10345_consen 364 LFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSK 443 (608)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCc
Confidence 3577888888999999999999887654221 12668889999999999999999998 4444444
Q ss_pred CCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013398 384 KWEQ---GELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 384 ~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
.+ .-+..|+..++...+...........+++
T Consensus 444 --~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~ 477 (608)
T PF10345_consen 444 --FRELYILAALNLAIILQYESSRDDSESELNELLE 477 (608)
T ss_pred --chHHHHHHHHHHHHHhHhhcccchhhhHHHHHHH
Confidence 22 22334666677666655443333444444
No 323
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.02 E-value=0.82 Score=40.29 Aligned_cols=99 Identities=18% Similarity=0.090 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH----HH
Q 013398 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG--GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG----EL 390 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~----~~ 390 (444)
..++..+|..|.+.|++++|++.|.++..-.. .+....++.+-.+-...+++.....++.+|-..-.+..++ .+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 46788999999999999999999999877543 3323566777778888899999999999888654311232 23
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 013398 391 LRTKAKVQLVQGQLKGAVETYTHLL 415 (444)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~al 415 (444)
....|......++|.+|...|-.++
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 3455677778888888888776554
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.67 E-value=0.4 Score=40.50 Aligned_cols=73 Identities=18% Similarity=0.101 Sum_probs=62.8
Q ss_pred HcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH
Q 013398 329 EQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL 404 (444)
Q Consensus 329 ~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~ 404 (444)
..++++++...+...--+.|+.+ +.-..-|+++...|++.||+..++...+..| ..+-..-.++.++..+|+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~-e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~--~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLK-ELDMFDGWLLIARGNYDEAARILRELLSSAG--APPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCcc-ccchhHHHHHHHcCCHHHHHHHHHhhhccCC--CchHHHHHHHHHHHhcCCh
Confidence 37899999999999999999985 8888899999999999999999999998887 5566666677777777754
No 325
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=93.56 E-value=4.1 Score=39.17 Aligned_cols=125 Identities=14% Similarity=0.024 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH
Q 013398 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ-----RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~-----g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e 370 (444)
+..+++...+.+++....|.-....-.++-++... -++..=...|.-...+.|+ | ..-.|.+..+....-.+.
T Consensus 270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-P-vV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-P-VVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-C-eEeehHHHHHHHhhhHHh
Confidence 45688999999988444566666666677666643 4666667777777778887 5 666677888877777888
Q ss_pred HHHHHHHHHhhcCC-CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013398 371 AETILNAALDQTGK-WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 371 A~~~~~~al~~~P~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
++..++...+. |. .+....+-.+|.++.++|+.++|...|++++++..+..+
T Consensus 348 gLa~ve~L~~~-~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 348 GLAMVEALLAR-PRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HHHHHHHhhcc-cccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 88888776654 21 145667788999999999999999999999999875544
No 326
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.41 E-value=0.58 Score=46.79 Aligned_cols=111 Identities=18% Similarity=0.126 Sum_probs=82.7
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh
Q 013398 152 VALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (444)
Q Consensus 152 ~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~ 231 (444)
.++.+.|.+|....+.+.+....|+|+.+.+.+.-+=..-..-..+.--+-..+..+|++++|...-.-.+ .-.-.++
T Consensus 314 ~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l--~~eie~~ 391 (831)
T PRK15180 314 AALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMML--SNEIEDE 391 (831)
T ss_pred HHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHh--ccccCCh
Confidence 56788899999999999999999999999988765544433333444445667888999999999998888 5455555
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Q 013398 232 PALLIASKICGEYPDLAEEGATFASRALECLGDG 265 (444)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~ 265 (444)
++....++. -..++-++++..+.++++.+.|+.
T Consensus 392 ei~~iaa~s-a~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 392 EVLTVAAGS-ADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred hheeeeccc-HHHHhHHHHHHHHHHHHhccCChh
Confidence 544322222 345788999999999999976654
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.36 E-value=13 Score=39.67 Aligned_cols=128 Identities=16% Similarity=0.011 Sum_probs=78.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCcccc
Q 013398 54 ADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFV 133 (444)
Q Consensus 54 ~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~ 133 (444)
.|....+.+.-++..-|...+..|..+.|..+++++++. .. +.. ......++.
T Consensus 292 ~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~--------i~---~~~------~~~~~~~~~---------- 344 (608)
T PF10345_consen 292 SWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQ--------IE---KLK------IKSPSAPSE---------- 344 (608)
T ss_pred eecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHH--------HH---Hhh------ccCCCCCCc----------
Confidence 355555555566666677888899999999999999987 11 100 000000000
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC---CC------CHHHHHHHHHH
Q 013398 134 PRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI---IN------RKERYHILALC 204 (444)
Q Consensus 134 ~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~ 204 (444)
-..++..-... +..+ ...+....+....-.|++..|....+.+.... |. .+..++-.|..
T Consensus 345 ---sl~~~~~~~~~--~~~l------~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~ 413 (608)
T PF10345_consen 345 ---SLSEASERIQW--LRYL------QCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLY 413 (608)
T ss_pred ---CHHHHHHhHHH--HHHH------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHH
Confidence 01111110000 0000 11244566777778899988888887666442 22 47789999999
Q ss_pred HHHCCCchHHHHHHH
Q 013398 205 YYGAGEDLVALNLLR 219 (444)
Q Consensus 205 l~~~g~~~~A~~~~~ 219 (444)
+...|+.+.|+..|.
T Consensus 414 ~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 414 YQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHcCCHHHHHHHHh
Confidence 999999999999998
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.96 E-value=0.13 Score=29.58 Aligned_cols=23 Identities=30% Similarity=0.222 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHCCCchHHHHHHH
Q 013398 197 RYHILALCYYGAGEDLVALNLLR 219 (444)
Q Consensus 197 ~~~~la~~l~~~g~~~~A~~~~~ 219 (444)
+++.+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44555666666666666655544
No 329
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.84 E-value=0.3 Score=49.30 Aligned_cols=87 Identities=10% Similarity=-0.136 Sum_probs=76.5
Q ss_pred cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHH
Q 013398 330 QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ---KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKG 406 (444)
Q Consensus 330 ~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~---g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~ 406 (444)
.+....|+..|.+++..-|+. ...+.+.+.++++. |+.-.|+.-+..|++++| -...+|+.++.++..++++.+
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~-~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~--s~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDA-IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP--SIQKAHFRLARALNELTRYLE 463 (758)
T ss_pred hHHHHHHHHHHHHHhhhccch-hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh--HHHHHHHHHHHHHHHHhhHHH
Confidence 356778999999999999998 59999999999887 566678888899999999 889999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 013398 407 AVETYTHLLAALQ 419 (444)
Q Consensus 407 A~~~~~~al~l~~ 419 (444)
|++....+.-..|
T Consensus 464 al~~~~alq~~~P 476 (758)
T KOG1310|consen 464 ALSCHWALQMSFP 476 (758)
T ss_pred hhhhHHHHhhcCc
Confidence 9998887776666
No 330
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.68 E-value=0.18 Score=47.56 Aligned_cols=86 Identities=10% Similarity=0.070 Sum_probs=69.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHH-HHHHHHHccCHHHHHHHHHHHHhhc
Q 013398 304 ALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL-MARILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 304 ~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~-la~~l~~~g~~~eA~~~~~~al~~~ 382 (444)
.|.++. -.-|+|+..|...+.-....|-+.+--..|.+++..+|.+ ++.|.. -+.=+...++++.+.+.+.+++..+
T Consensus 95 ~~~R~t-nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 95 ELYRST-NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred eeehhh-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 344555 5779999999877766677788999999999999999998 598886 4455677799999999999999999
Q ss_pred CCCCcHHHHHH
Q 013398 383 GKWEQGELLRT 393 (444)
Q Consensus 383 P~~~~~~~~~~ 393 (444)
| +++.+|..
T Consensus 173 ~--~~p~iw~e 181 (435)
T COG5191 173 S--RSPRIWIE 181 (435)
T ss_pred C--CCchHHHH
Confidence 9 88887764
No 331
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.65 E-value=2.4 Score=47.00 Aligned_cols=130 Identities=16% Similarity=0.058 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013398 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (444)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg 324 (444)
.+.++.|+..|+|.-.-+|...+.+ .|.+..|+.+..++...... ..+++|+..|++.- -.|.-|--+..-|
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 559 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGY--EAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLH--GGVGAPLEYLGKA 559 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccch--HHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhc--CCCCCchHHHhHH
Confidence 4578999999999999888766544 57899999988876543221 36889999998765 5677777778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhhcC
Q 013398 325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-----KRYEDAETILNAALDQTG 383 (444)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~-----g~~~eA~~~~~~al~~~P 383 (444)
.+|.++|+++|=++.|.-|++.-|.+| ..-...-.+-.++ .+...|....--++...|
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHP-EISRLRDHLVYRLHESLYKHRREALVFMLLALWIAP 622 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999987 4433222221111 334456566666666667
No 332
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=14 Score=38.12 Aligned_cols=168 Identities=15% Similarity=0.079 Sum_probs=101.9
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcc-------hhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh-----
Q 013398 244 YPDLAEEGATFASRALECLGDGCD-------QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS----- 311 (444)
Q Consensus 244 ~~~~~~eA~~~~~~al~~~~~~~~-------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~----- 311 (444)
+.+-+++|...|.-+....+++.- +++......++.+...+|.... ..+..+.++=.|++++ .
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~----aadLieR~Ly~~d~a~-hp~F~~ 324 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREM----AADLIERGLYVFDRAL-HPNFIP 324 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhh----HHHHHHHHHHHHHHHh-cccccc
Confidence 345566777777766666555421 3445556666666666554321 1234566777777766 3
Q ss_pred ---------hCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-CChHHHHHHHHHH-HHccCHHHHHHHHHH
Q 013398 312 ---------TNMRDLS---ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-SNLKGWLLMARIL-SAQKRYEDAETILNA 377 (444)
Q Consensus 312 ---------~~P~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~~la~~l-~~~g~~~eA~~~~~~ 377 (444)
+.|.|-. +++..=..+.+.|-+..|.+.++-.+.++|. +| -+...+-.+| ...++|+=-+..++.
T Consensus 325 ~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDP-l~~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 325 FSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDP-LGILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred ccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCc-hhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1233322 2233334456789999999999999999999 87 4444444444 455667766666555
Q ss_pred H-----HhhcCCCCcHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHh
Q 013398 378 A-----LDQTGKWEQGELLRTKAKVQLVQGQ---LKGAVETYTHLLAALQV 420 (444)
Q Consensus 378 a-----l~~~P~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~~~ 420 (444)
. +.+.| |...-..+|..+..... ...|+..+.+|+.+.|.
T Consensus 404 ~e~~n~l~~~P---N~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 404 PENMNKLSQLP---NFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHhhccHhhcC---CchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 4 44556 33333445555555554 46788888999888883
No 333
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.38 E-value=19 Score=39.14 Aligned_cols=241 Identities=15% Similarity=0.038 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC---------CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013398 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIIN---------RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~ 230 (444)
.|..-...+-.+....++.+|..+..++-..-|. ..+..--.|.+....|++++|++..+.++ ..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al--~~L~~~ 491 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLAL--VQLPEA 491 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--Hhcccc
Confidence 4444555666777788888888777766544333 11233335888999999999999999999 555553
Q ss_pred hH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc-chhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHH
Q 013398 231 LP-----ALLIASKICGEYPDLAEEGATFASRALECLGDGC-DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (444)
Q Consensus 231 ~~-----a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~ 304 (444)
.. +....+.+ ..-.|++++|..+.+.+.+.....+ ..+...+......++..+|.. .+++....
T Consensus 492 ~~~~r~~~~sv~~~a-~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~---------~~a~~~~~ 561 (894)
T COG2909 492 AYRSRIVALSVLGEA-AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQV---------ARAEQEKA 561 (894)
T ss_pred cchhhhhhhhhhhHH-HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHH---------HHHHHHHH
Confidence 22 12222222 2236889999999888887532221 111122233334444444421 12333333
Q ss_pred HH----HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC------ChHHHHHHHHHHHHccCHHHHHHH
Q 013398 305 LV----SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS------NLKGWLLMARILSAQKRYEDAETI 374 (444)
Q Consensus 305 ~~----~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~~la~~l~~~g~~~eA~~~ 374 (444)
|. +-+ ...|-+.....-.+.++..--+++.+.....+.+++--.. ..-+...|+.+....|++++|...
T Consensus 562 ~~~~~~q~l-~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~ 640 (894)
T COG2909 562 FNLIREQHL-EQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ 640 (894)
T ss_pred HHHHHHHHh-hhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 32 233 3445544444333333333333777777777776654321 111234788889999999999988
Q ss_pred HHHHHhhcCCCC---cH--HHHHHHHHHHHHhCCHHHHHHHHHH
Q 013398 375 LNAALDQTGKWE---QG--ELLRTKAKVQLVQGQLKGAVETYTH 413 (444)
Q Consensus 375 ~~~al~~~P~~~---~~--~~~~~la~~~~~~g~~~~A~~~~~~ 413 (444)
.+....+--.++ +. .++.........+|+..+|.....+
T Consensus 641 l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 641 LDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 887775432101 12 2223333444667888777766655
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.30 E-value=0.19 Score=28.81 Aligned_cols=22 Identities=14% Similarity=0.002 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 013398 319 ILYRLSLEYAEQRKLNAAHYYA 340 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~ 340 (444)
+.+.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555444
No 335
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.27 E-value=0.97 Score=42.20 Aligned_cols=73 Identities=15% Similarity=0.007 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013398 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK 396 (444)
Q Consensus 321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~ 396 (444)
.++=..+.+.++++.|....++.+.++|+++ .-+.-.|.+|..+|-+.-|+..+...++.-| +++.+-..++.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp-~eirDrGliY~ql~c~~vAl~dl~~~~~~~P--~~~~a~~ir~~ 257 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDP-YEIRDRGLIYAQLGCYHVALEDLSYFVEHCP--DDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCCh-hhccCcHHHHHhcCCchhhHHHHHHHHHhCC--CchHHHHHHHH
Confidence 4445556666777777777777777777774 6666677777777777777777777777777 55554444433
No 336
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.22 E-value=0.59 Score=44.13 Aligned_cols=62 Identities=13% Similarity=-0.052 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 013398 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (444)
Q Consensus 301 A~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~ 364 (444)
|...|.+|+ .+.|++...++.||.+....|+.=.|+-+|-|++...--++ .+..+|..++.+
T Consensus 1 A~~~Y~~A~-~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~-~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAI-RLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFP-SARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHH-HH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--H-HHHHHHHHHHHH
T ss_pred CHHHHHHHH-HhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHH
Confidence 556677777 77777777777777777777777777777777765543343 666666666554
No 337
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.10 E-value=0.21 Score=47.14 Aligned_cols=78 Identities=9% Similarity=0.009 Sum_probs=69.6
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHH-HHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013398 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHI-LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (444)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~ 234 (444)
.-|.|+.+|.....-....|-+.+--..|-++++.+|.+.+.|.. -+.-+...++++.+...|.+++ +.+|++|..|
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~gl--R~N~~~p~iw 179 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGL--RMNSRSPRIW 179 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhh--ccCCCCchHH
Confidence 448999999988877777888899999999999999999999987 5667888899999999999999 9999999877
Q ss_pred H
Q 013398 235 L 235 (444)
Q Consensus 235 ~ 235 (444)
.
T Consensus 180 ~ 180 (435)
T COG5191 180 I 180 (435)
T ss_pred H
Confidence 5
No 338
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.05 E-value=0.67 Score=36.11 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=44.1
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCC--------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 328 AEQRKLNAAHYYAKMLLKLEGGSN--------LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 328 ~~~g~~~~A~~~~~~al~l~P~~~--------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
.+.|++.+|++.+.+......... ..++.++|.+....|++++|+..+++|+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 457888888888888776554331 24677899999999999999999999998764
No 339
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.94 E-value=0.41 Score=30.38 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013398 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
.++..+|.+-...++|++|+..|+++|+|..+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 356778888888888888888888888887653
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.77 E-value=1.1 Score=40.01 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHccCHHHH
Q 013398 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSAQKRYEDA 371 (444)
Q Consensus 299 ~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~~la~~l~~~g~~~eA 371 (444)
++|...|-++-+.-.=++++..+.||..|. ..+.++|+..+-+++++.+.+ ..+.+..|+.++..+|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 466666665542233367778888886665 678888888888888876553 126677777777777777766
No 341
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.69 E-value=0.26 Score=30.94 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHH--HhhcCCCCCC
Q 013398 195 KERYHILALCYYGAGEDLVALNLLR--TLLSGSEDPK 229 (444)
Q Consensus 195 ~~~~~~la~~l~~~g~~~~A~~~~~--~al~~~~~P~ 229 (444)
++.|+.+|-.+...|++++|+..|. -+. .++|.
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~--~ld~~ 35 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLC--ALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--HHTTT
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHH--Hhccc
Confidence 3567888888888888888888844 555 45554
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.64 E-value=11 Score=38.38 Aligned_cols=69 Identities=14% Similarity=0.053 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013398 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
|+++.|.+. ....+++.-|-.||.....+|+++-|+++|+++= -+..|..++...|+-+.=....
T Consensus 332 g~L~~A~~~------a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 332 GNLDIALEI------AKELDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp T-HHHHHHH------CCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHH
T ss_pred CCHHHHHHH------HHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHH
Confidence 455655544 2334578889999999999999999999998872 1233555666677765544444
Q ss_pred HHHH
Q 013398 376 NAAL 379 (444)
Q Consensus 376 ~~al 379 (444)
+.|.
T Consensus 397 ~~a~ 400 (443)
T PF04053_consen 397 KIAE 400 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 343
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.59 E-value=39 Score=40.96 Aligned_cols=237 Identities=13% Similarity=0.061 Sum_probs=137.7
Q ss_pred HHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHH
Q 013398 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE 249 (444)
Q Consensus 170 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~ 249 (444)
.+...|++..|.++|+++++.+|+....+...=...+..|.+...+.+.+-.. .-.++...-++..+.-.-...++++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~--~~~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI--INRSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh--hccCHHHHHHHHHHHHHHhhhcchh
Confidence 45667999999999999999999988888888888888999999998888877 4555544444433322223344444
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhh-hhc--hH---------------HHHhhHHHH----------
Q 013398 250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV-AIT--DF---------------DRATRQAKA---------- 301 (444)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~-~~~--~~---------------~~~~~~~eA---------- 301 (444)
.-..+.. ..+.+... ...+|.+.....+. ... +. ...+.+..+
T Consensus 1536 ~~e~~l~------~~n~e~w~---~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l 1606 (2382)
T KOG0890|consen 1536 LLESYLS------DRNIEYWS---VESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL 1606 (2382)
T ss_pred hhhhhhh------cccccchh---HHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH
Confidence 3333311 00000000 00022211110000 000 00 000000011
Q ss_pred --HHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHH-hh--cCCC---ChHHHHHHHHHHHHccCH
Q 013398 302 --LQALVSAARSTNMRDLS-----ILYRLSLEYAEQRKLNAAHYYAKMLL-KL--EGGS---NLKGWLLMARILSAQKRY 368 (444)
Q Consensus 302 --~~~~~~al~~~~P~~~~-----a~~~lg~~~~~~g~~~~A~~~~~~al-~l--~P~~---~~~~~~~la~~l~~~g~~ 368 (444)
++...+.+....|++.. -|-+....=....+..+-+-.+++++ .+ +|+. -+++|...|.+-...|++
T Consensus 1607 ~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1607 LELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 11111111022232222 22222222222234555556666663 23 4432 148999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013398 369 EDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 369 ~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
+-|-.++-+|.+..+ ++++.-+|+.+-.+|+-..|+..+++.++.+...
T Consensus 1687 q~A~nall~A~e~r~----~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESRL----PEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHHHHHHHhhhhccc----chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 999999999988765 3778889999999999999999999999887655
No 344
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.50 E-value=0.63 Score=43.91 Aligned_cols=62 Identities=16% Similarity=-0.028 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013398 336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (444)
Q Consensus 336 A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~ 400 (444)
|+.+|.+|+.+.|++ ...|+.+|.+....|+.-+|+-+|-|++-..- ....+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~-G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~--Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRI--PFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB-SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-CCcccchhhhhccccchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHH
Confidence 789999999999999 59999999999999999999999999996543 367888888888888
No 345
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.34 E-value=2.3 Score=44.10 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013398 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~ 393 (444)
++.+-|.-+.+..+|..+++.|+..+.-=|.+. +.....+..+|..+.+.|.|+++++.|-+.+| .++--.+.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~--~~~l~q~~ 433 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR--QSPLCQLL 433 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc--ccHHHHHH
Confidence 345556667778888888888888887655532 24566788888888888888888888888888 77777777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013398 394 KAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
.-.+....|.-++|+.+..+...+-.+
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 777777778888888877776655443
No 346
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.25 E-value=18 Score=36.44 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=46.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013398 359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (444)
Q Consensus 359 a~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 413 (444)
|..++.+|+|.++.-+-.=..+.+| ++.++..+|.++....+|++|+.++..
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP---S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP---SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4557889999999988888888999 889999999999999999999998764
No 347
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.06 E-value=21 Score=37.01 Aligned_cols=78 Identities=9% Similarity=-0.057 Sum_probs=63.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH-HCCCchHHHHHHHHhhcCCCCC
Q 013398 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYY-GAGEDLVALNLLRTLLSGSEDP 228 (444)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~-~~g~~~~A~~~~~~al~~~~~P 228 (444)
++..|...|-.-..|-..+..-.+.|..+.++..|++++.--|-+.+.|..+-..+. ..|+.+.=...|++|+ ....
T Consensus 68 y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~--~~vG 145 (577)
T KOG1258|consen 68 YDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK--SYVG 145 (577)
T ss_pred HHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH--Hhcc
Confidence 577888889999999999999999999999999999999999999999988744444 4466666668888888 4444
Q ss_pred C
Q 013398 229 K 229 (444)
Q Consensus 229 ~ 229 (444)
.
T Consensus 146 ~ 146 (577)
T KOG1258|consen 146 L 146 (577)
T ss_pred c
Confidence 3
No 348
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.82 E-value=25 Score=37.34 Aligned_cols=172 Identities=12% Similarity=-0.095 Sum_probs=84.2
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHH----------HHHHHHHHHCCCchHHHHHHHHhhc
Q 013398 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERY----------HILALCYYGAGEDLVALNLLRTLLS 223 (444)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~l~~~g~~~~A~~~~~~al~ 223 (444)
++.+| .|..|.+++..-...-.++-|...|=+.-... + .... .+.|.+-.--|++++|++.|-.+=
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~d- 761 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-G-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDAD- 761 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-c-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccc-
Confidence 35555 67889988887776666666666665543221 0 1111 223444445588899988886544
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhh--hhhhchHHHHhh---H
Q 013398 224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS--KVAITDFDRATR---Q 298 (444)
Q Consensus 224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~--~~~~~~~~~~~~---~ 298 (444)
+ .+..+- .....|++-.-...++.. -.+.++...-.|+..+|..+..+- ..+...+...++ +
T Consensus 762 -r---rDLAie------lr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~ 828 (1189)
T KOG2041|consen 762 -R---RDLAIE------LRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQ 828 (1189)
T ss_pred -h---hhhhHH------HHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhH
Confidence 2 121111 112233321111111100 012223344566777776554321 111111111111 1
Q ss_pred H------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013398 299 A------KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML 343 (444)
Q Consensus 299 ~------eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 343 (444)
- +-..-++... ..=|+|...+-.+|..+...|.-++|++.|-+.
T Consensus 829 ~ecly~le~f~~LE~la-~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLA-RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHHHHhhhhHHHHH-HhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 1 1112234444 555777777777888888888888887777543
No 349
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.79 E-value=10 Score=40.12 Aligned_cols=185 Identities=17% Similarity=0.062 Sum_probs=99.0
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHh---------cCCCC
Q 013398 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICG---------EYPDL 247 (444)
Q Consensus 177 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~---------~~~~~ 247 (444)
.+.|++..+ +..+|..|-.||..-...-.++-|+..|-++- . -|.-- ..-.++.+.- ..-|+
T Consensus 679 ledA~qfiE-----dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~--d-Y~Gik-~vkrl~~i~s~~~q~aei~~~~g~ 749 (1189)
T KOG2041|consen 679 LEDAIQFIE-----DNPHPRLWRLLAEYALFKLALDTAEHAFVRCG--D-YAGIK-LVKRLRTIHSKEQQRAEISAFYGE 749 (1189)
T ss_pred hHHHHHHHh-----cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhc--c-ccchh-HHHHhhhhhhHHHHhHhHhhhhcc
Confidence 455555443 34478999999998888888888998888876 2 22210 0000111110 12477
Q ss_pred HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 013398 248 AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLS 324 (444)
Q Consensus 248 ~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg 324 (444)
++||.+.|-.+=.. .|++-+. .+.|++-.-.+.++.-- -+.+| -.++.++|
T Consensus 750 feeaek~yld~drr--------------DLAielr----------~klgDwfrV~qL~r~g~--~d~dD~~~e~A~r~ig 803 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRR--------------DLAIELR----------KKLGDWFRVYQLIRNGG--SDDDDEGKEDAFRNIG 803 (1189)
T ss_pred hhHhhhhhhccchh--------------hhhHHHH----------HhhhhHHHHHHHHHccC--CCcchHHHHHHHHHHH
Confidence 88888877432211 1111111 12234444444444321 12222 35788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH
Q 013398 325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL 404 (444)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~ 404 (444)
..++.+..+++|.++|.+.-... ++..++...+.|++-... ...-| ++.+.+--+|..+...|--
T Consensus 804 ~~fa~~~~We~A~~yY~~~~~~e---------~~~ecly~le~f~~LE~l----a~~Lp--e~s~llp~~a~mf~svGMC 868 (1189)
T KOG2041|consen 804 ETFAEMMEWEEAAKYYSYCGDTE---------NQIECLYRLELFGELEVL----ARTLP--EDSELLPVMADMFTSVGMC 868 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccchH---------hHHHHHHHHHhhhhHHHH----HHhcC--cccchHHHHHHHHHhhchH
Confidence 88888888888888887763221 123333444555543222 22235 5555555566666666666
Q ss_pred HHHHHHH
Q 013398 405 KGAVETY 411 (444)
Q Consensus 405 ~~A~~~~ 411 (444)
++|+++|
T Consensus 869 ~qAV~a~ 875 (1189)
T KOG2041|consen 869 DQAVEAY 875 (1189)
T ss_pred HHHHHHH
Confidence 6666555
No 350
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.76 E-value=2.1 Score=47.45 Aligned_cols=124 Identities=15% Similarity=0.065 Sum_probs=92.5
Q ss_pred HhhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 013398 295 ATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQ----R---KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~----g---~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~ 364 (444)
...|+.|+..|+++. ..-|+- .++.+.+|..+.++ | .+++|+..|++... .|.-| --|...|.+|..
T Consensus 488 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~ 564 (932)
T PRK13184 488 EKLYDQALIFYRRIR-ESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAP-LEYLGKALVYQR 564 (932)
T ss_pred hHHHHHHHHHHHHHh-hcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCc-hHHHhHHHHHHH
Confidence 467999999999999 998865 46889999988754 3 57888888887644 45555 678889999999
Q ss_pred ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHhhhh
Q 013398 365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG-----QLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 365 ~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~l~~~~~~ 423 (444)
+|+|+|=++++.-|++..| +++++-..+-.+-.++. +-..|..-.--++.+.|....
T Consensus 565 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 565 LGEYNEEIKSLLLALKRYS--QHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKIS 626 (932)
T ss_pred hhhHHHHHHHHHHHHHhcC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999999999 77766555444433332 224455555566677775444
No 351
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=90.68 E-value=2.4 Score=47.52 Aligned_cols=109 Identities=17% Similarity=0.088 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC--
Q 013398 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-----GGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGK-- 384 (444)
Q Consensus 314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~-- 384 (444)
|++...+.+++......++...|+..+.+++.+. |++| +....+++.++...++++.|+.+.+.|++.+-+
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 4445556666666666666666666666665542 2232 234456666666667777777777777654321
Q ss_pred ----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 385 ----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 385 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
-.....+..++.+..-.|++..|+...+....+.+.+-
T Consensus 1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ql 1133 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQL 1133 (1236)
T ss_pred CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhh
Confidence 02344455566666666666666666666666665443
No 352
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.66 E-value=20 Score=36.04 Aligned_cols=207 Identities=14% Similarity=0.012 Sum_probs=129.6
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 013398 183 QIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECL 262 (444)
Q Consensus 183 ~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~ 262 (444)
.|++++..-|-.++.|+....-+...++-+.|+...++++ ...|. .++.+ ..|+.--++.++--.+|++.++.+
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~--~~sps---L~~~l-se~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGI--EMSPS---LTMFL-SEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc--cCCCc---hheeH-HHHHhhcccHHHHhhhHHHHHHHH
Confidence 5788888889999999999999999999999999999999 77776 22222 335554555555556677766632
Q ss_pred CCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013398 263 GDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKM 342 (444)
Q Consensus 263 ~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 342 (444)
.. .+..|..-..-+ ..++++..-+.+-+ ....-.-+|+-+-..-.+..-++.|...|-+
T Consensus 364 ~r---------~ys~~~s~~~s~--------~D~N~e~~~Ell~k----r~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 364 KR---------KYSMGESESASK--------VDNNFEYSKELLLK----RINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HH---------HHhhhhhhhhcc--------ccCCccccHHHHHH----HHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 11 111111111000 01222111111111 1112234454444444556678889999999
Q ss_pred HHhhcCCCChHHHHHHHHH-HHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013398 343 LLKLEGGSNLKGWLLMARI-LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 343 al~l~P~~~~~~~~~la~~-l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
+-+..=-.. ..+..-|.+ +..+|++.-|-.+++-.+..+| |++..-.-.-.-+...++-..|...|+++++-..
T Consensus 423 ~rk~~~~~h-~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~--d~~~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 423 LRKEGIVGH-HVYIYCAFIEYYATGDRATAYNIFELGLLKFP--DSTLYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred HhccCCCCc-ceeeeHHHHHHHhcCCcchHHHHHHHHHHhCC--CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 876551221 333333333 5678999999999999999999 6665544445566788888999999987775444
No 353
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.49 E-value=1.2 Score=41.55 Aligned_cols=69 Identities=22% Similarity=0.036 Sum_probs=61.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHH
Q 013398 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (444)
Q Consensus 166 ~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~ 236 (444)
++=.++.+.++++.|..+-++.+.++|+++.-+--.|.+|.++|.+.-|+..+...+ ..-|+.+.+-..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~--~~~P~~~~a~~i 254 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFV--EHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHH--HhCCCchHHHHH
Confidence 445577889999999999999999999999999999999999999999999999988 788988876543
No 354
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=90.42 E-value=12 Score=33.00 Aligned_cols=196 Identities=14% Similarity=0.030 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHHHHHHC-CCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHcCCCc
Q 013398 192 INRKERYHILALCYYGA-GEDLVALNLLRTLLSGSEDPKCLPALLIASKICG----EYPDLAEEGATFASRALECLGDGC 266 (444)
Q Consensus 192 p~~~~~~~~la~~l~~~-g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~----~~~~~~~eA~~~~~~al~~~~~~~ 266 (444)
-..|+..+.||.-+... .+|++|.++|+.-. . +-.++...+-.|...+ ...+.+..|+..+..+-+..
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nC--d-en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n---- 103 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNC--D-ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN---- 103 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc--c-ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC----
Confidence 45677777888766654 57788888887766 2 2234433332222211 12334556666666655521
Q ss_pred chhhhHHHHHhhhhhhhhhhhhhchHHHHh--hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013398 267 DQMESTANCLLGISLSAQSKVAITDFDRAT--RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL 344 (444)
Q Consensus 267 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~--~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 344 (444)
...+-.++|........ .|.+ +..+|.+.+.++. . -+|..+-++|...+... .++ +.
T Consensus 104 ---~~~aC~~~gLl~~~g~~------~r~~dpd~~Ka~~y~traC-d--l~~~~aCf~LS~m~~~g--~~k-------~~ 162 (248)
T KOG4014|consen 104 ---IPQACRYLGLLHWNGEK------DRKADPDSEKAERYMTRAC-D--LEDGEACFLLSTMYMGG--KEK-------FK 162 (248)
T ss_pred ---CHHHHhhhhhhhccCcC------CccCCCCcHHHHHHHHHhc-c--CCCchHHHHHHHHHhcc--chh-------hc
Confidence 13455556655443211 1112 2566777777666 3 34455566665554422 121 12
Q ss_pred hhcCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHH
Q 013398 345 KLEGG--SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAAL 418 (444)
Q Consensus 345 ~l~P~--~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~ 418 (444)
.-.|. .| .- .+..+.-.++.+.|..+-.+|-++. ++.+--+....+.. -.+.++|...=+++.+|.
T Consensus 163 t~ap~~g~p-~~---~~~~~~~~kDMdka~qfa~kACel~----~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 163 TNAPGEGKP-LD---RAELGSLSKDMDKALQFAIKACELD----IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred ccCCCCCCC-cc---hhhhhhhhHhHHHHHHHHHHHHhcC----ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 22331 11 11 1222333478889999999998874 33444444444321 235678999889999988
Q ss_pred Hhhhh
Q 013398 419 QVQTK 423 (444)
Q Consensus 419 ~~~~~ 423 (444)
.....
T Consensus 235 ~e~~k 239 (248)
T KOG4014|consen 235 EELRK 239 (248)
T ss_pred HHHHc
Confidence 76554
No 355
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.23 E-value=1.2 Score=42.12 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013398 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
++..++..+...|+++.++..+++.+..+|-+...|..+-..|+..|+...|+..|++.-
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 445566666666666666666666666666666666666666666666666666666654
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.97 E-value=4 Score=30.48 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=35.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhcCCCCcH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013398 358 MARILSAQKRYEDAETILNAALDQTGKWEQG---ELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 358 la~~l~~~g~~~eA~~~~~~al~~~P~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
-|.=++.+.+.++|+..++++++..+ +.. .++-.+..++...|++.+.++.--+-+++..+
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~--~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~e 75 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKIT--DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEE 75 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666777777777776655 332 33334445566677777776666666665544
No 357
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.84 E-value=7.7 Score=40.47 Aligned_cols=87 Identities=17% Similarity=0.109 Sum_probs=73.2
Q ss_pred HHHhhHHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc
Q 013398 293 DRATRQAKALQALVSAARSTNMRDL------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (444)
Q Consensus 293 ~~~~~~~eA~~~~~~al~~~~P~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g 366 (444)
.+..+|..+++.|...+ .--|.|- ...-+++.+|....+++.|+++++.|-+.+|.++ -.-...-.+...-|
T Consensus 365 F~~~~Y~~s~~~y~~Sl-~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~-l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSL-KDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP-LCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHH-HhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH-HHHHHHHHHHHHhc
Confidence 56678999999999999 7777664 3456889999999999999999999999999985 77777777777889
Q ss_pred CHHHHHHHHHHHHhh
Q 013398 367 RYEDAETILNAALDQ 381 (444)
Q Consensus 367 ~~~eA~~~~~~al~~ 381 (444)
.-++|+.+..+....
T Consensus 443 ~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 443 KSEEALTCLQKIKSS 457 (872)
T ss_pred chHHHHHHHHHHHhh
Confidence 999999998877644
No 358
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.70 E-value=0.83 Score=29.00 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013398 354 GWLLMARILSAQKRYEDAETILNAALD 380 (444)
Q Consensus 354 ~~~~la~~l~~~g~~~eA~~~~~~al~ 380 (444)
++..||.+-...++|++|+.-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444455555544444443
No 359
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.19 E-value=71 Score=38.90 Aligned_cols=136 Identities=16% Similarity=0.072 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013398 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (444)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~ 325 (444)
.+..|-+-.++|++-....++ ..--.+|.+|.+-++.+ ...|+++.|..+.-.|. +.. -+.+..-.|.
T Consensus 1643 ~~~~epILa~RRs~l~~~~~~-----~~~~~~ge~wLqsAria----R~aG~~q~A~nall~A~-e~r--~~~i~~E~AK 1710 (2382)
T KOG0890|consen 1643 FRIKEPILAFRRSMLDLRMRS-----NLKSRLGECWLQSARIA----RLAGHLQRAQNALLNAK-ESR--LPEIVLERAK 1710 (2382)
T ss_pred HHHHhHHHHHHHHHHHHhccc-----cccchhHHHHHHHHHHH----HhcccHHHHHHHHHhhh-hcc--cchHHHHHHH
Confidence 346677777787776442110 11223444444443322 23588999999999988 777 5678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhc-CCC-------C--------hHHHHHHHHHHHHccCHH--HHHHHHHHHHhhcCCCCc
Q 013398 326 EYAEQRKLNAAHYYAKMLLKLE-GGS-------N--------LKGWLLMARILSAQKRYE--DAETILNAALDQTGKWEQ 387 (444)
Q Consensus 326 ~~~~~g~~~~A~~~~~~al~l~-P~~-------~--------~~~~~~la~~l~~~g~~~--eA~~~~~~al~~~P~~~~ 387 (444)
.+..+|+-..|+..+++.++++ |+. | ..+...++......|+++ +-+.+|..+.+..|.|+
T Consensus 1711 ~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe- 1789 (2382)
T KOG0890|consen 1711 LLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE- 1789 (2382)
T ss_pred HHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc-
Confidence 9999999999999999999765 431 1 013334444444555533 45678999999999443
Q ss_pred HHHHHHHH
Q 013398 388 GELLRTKA 395 (444)
Q Consensus 388 ~~~~~~la 395 (444)
.-+|.+|
T Consensus 1790 -~~hy~l~ 1796 (2382)
T KOG0890|consen 1790 -DKHYHLG 1796 (2382)
T ss_pred -CceeeHH
Confidence 4455555
No 360
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=88.14 E-value=10 Score=35.14 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHH-CCCchHHHHHHHHhh
Q 013398 165 DHLSFAFSIAGDLSSLATQIEELLPGIIN-RKERYHILALCYYG-AGEDLVALNLLRTLL 222 (444)
Q Consensus 165 ~~lg~~l~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~-~g~~~~A~~~~~~al 222 (444)
..++.+....|+|++.+.++.+++..+|+ +.+-..-|..+|-. .|....++..+....
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 45677788889999999999998888765 34445555666533 355555665555544
No 361
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.14 E-value=41 Score=36.13 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHH
Q 013398 297 RQAKALQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (444)
Q Consensus 297 ~~~eA~~~~~~al~~~~P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~ 372 (444)
+.+.|...+.+.. ...+-+.+ ++..+|.-....+...+|...+..+.....+. ..+.-...+-...++.+...
T Consensus 256 d~~~A~~~~~~~~-~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~--~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 256 DAENARLMIPSLV-RAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST--SLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred CHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc--HHHHHHHHHHHHccCHHHHH
Confidence 4577888887765 55544332 33455555555444778888888765443332 33333333444788888877
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013398 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 373 ~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
.++...-.... .....+|=+|..+..+|+.++|...|+++..
T Consensus 333 ~~i~~L~~~~~--~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 333 TWLARLPMEAK--EKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHhcCHhhc--cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77776433222 3456667788888889999999999999743
No 362
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.83 E-value=8.8 Score=34.34 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=44.1
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 013398 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR----DLSILYRLSLEYAEQRKLNAAH 337 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~----~~~a~~~lg~~~~~~g~~~~A~ 337 (444)
+...+.|+..|.+ .+.++|+..+-+++ ++.+. |++++..|+.++..+|+++.|-
T Consensus 141 ~elq~aLAtyY~k------------rD~~Kt~~ll~~~L-~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATYYTK------------RDPEKTIQLLLRAL-ELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHHc------------cCHHHHHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5667778877764 36789999999999 76544 4899999999999999999873
No 363
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.66 E-value=4 Score=38.63 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013398 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD 380 (444)
Q Consensus 316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~ 380 (444)
...++..++-.+...|+++.++..+++.+.++|-+ -..|..+-.++...|+...|+..|++.-.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~-E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYD-EPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 36677888888888899999999999999999988 48888888889999999999988887765
No 364
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.53 E-value=5.3 Score=35.18 Aligned_cols=61 Identities=10% Similarity=-0.033 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013398 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIIN---RKERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 162 ~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
.++..+|..|.+.|+.++|+++|.++...... ..+.++++-.+....|++......+.++-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35666777777777777777777766655432 23455555666666666666666655555
No 365
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.20 E-value=2.5 Score=39.78 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=35.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHH
Q 013398 167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRT 220 (444)
Q Consensus 167 lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~ 220 (444)
.+..+...|.+.+|++..+++++++|-+...|..|-.+|...|+--+|++.|++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 344556666666666666666666666666666666666666666666666555
No 366
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.88 E-value=25 Score=35.91 Aligned_cols=29 Identities=14% Similarity=0.029 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013398 194 RKERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 194 ~~~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
+++-|-.||...+.+|+++-|+.+|+++=
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 44455555555555555555555555443
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.74 E-value=4.1 Score=30.42 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHH---HHHHccCHHHHHHHHHHHHh
Q 013398 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR---ILSAQKRYEDAETILNAALD 380 (444)
Q Consensus 322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~---~l~~~g~~~eA~~~~~~al~ 380 (444)
.-|+-++.+.+.++|+...+++++..++.+ ..|..+|. ++..-|+|.+.+++-.+=++
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677888888999999988888864 77766654 46666888888776554443
No 368
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=85.32 E-value=6 Score=39.20 Aligned_cols=82 Identities=21% Similarity=0.126 Sum_probs=53.5
Q ss_pred HHHhhHHHHHHHHHHHHHhhC--------CCCHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH
Q 013398 293 DRATRQAKALQALVSAARSTN--------MRDLS----------ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (444)
Q Consensus 293 ~~~~~~~eA~~~~~~al~~~~--------P~~~~----------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 354 (444)
.+.+.|..|..-|+.++ ++- |..+. +--.|..||.++++.+-|+....+.+.+||-+. .-
T Consensus 187 yrqk~ya~Aa~rF~taL-elcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f-rn 264 (569)
T PF15015_consen 187 YRQKKYAVAAGRFRTAL-ELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF-RN 264 (569)
T ss_pred HhhHHHHHHHHHHHHHH-HHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh-hH
Confidence 45667777777777777 752 11111 113566777777777777777777777777764 66
Q ss_pred HHHHHHHHHHccCHHHHHHHHH
Q 013398 355 WLLMARILSAQKRYEDAETILN 376 (444)
Q Consensus 355 ~~~la~~l~~~g~~~eA~~~~~ 376 (444)
+..-|.++..+.||.+|-...-
T Consensus 265 HLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 265 HLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777655443
No 369
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.83 E-value=1.3 Score=26.13 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 013398 175 GDLSSLATQIEELLPGIINRKERYHILALC 204 (444)
Q Consensus 175 g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 204 (444)
|+.+.+...|++++...|.+++.|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456677777777777777777777766543
No 370
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.72 E-value=35 Score=32.04 Aligned_cols=202 Identities=15% Similarity=0.118 Sum_probs=100.7
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC
Q 013398 133 VPRNNIEEAILLLMILLRKVALKRIEWDPS----ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA 208 (444)
Q Consensus 133 ~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~----~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~ 208 (444)
.....+++|+..+ ..++...|+-.+ ++-.+-.+..++|++++-.+.|.+.+.. .. .-...
T Consensus 38 l~e~~p~~Al~sF-----~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY--------Ik---SAVTr 101 (440)
T KOG1464|consen 38 LKEDEPKEALSSF-----QKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY--------IK---SAVTR 101 (440)
T ss_pred ccccCHHHHHHHH-----HHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH--------HH---HHHhc
Confidence 3556788998765 456666565433 4556667888889998888888776632 11 11111
Q ss_pred CCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhhhhhhhhhh
Q 013398 209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKV 287 (444)
Q Consensus 209 g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~ 287 (444)
+--++.+...-.-+ . ...+.+---.+|+..++.+.+ ..+.++...-.-||..|+..+.+
T Consensus 102 NySEKsIN~IlDyi--S------------------tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~ 161 (440)
T KOG1464|consen 102 NYSEKSINSILDYI--S------------------TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEY 161 (440)
T ss_pred cccHHHHHHHHHHH--h------------------hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHH
Confidence 22222332222222 1 111111122344433332211 11111122223467676665432
Q ss_pred hhchHHHHhhHHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013398 288 AITDFDRATRQAKALQALVSAARSTNMRDLS---------ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (444)
Q Consensus 288 ~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (444)
++..+-++.+.+.. +.+....+ ++-.--..|-.+++-.+-...|++++.+..--| ..+ -+
T Consensus 162 --------~kl~KIlkqLh~SC-q~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP-HPl-Im 230 (440)
T KOG1464|consen 162 --------TKLQKILKQLHQSC-QTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP-HPL-IM 230 (440)
T ss_pred --------HHHHHHHHHHHHHh-ccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC-chH-HH
Confidence 23344444444444 33322111 222223455667777777788888888775432 111 12
Q ss_pred -------HHHHHHccCHHHHHHHHHHHHhh
Q 013398 359 -------ARILSAQKRYEDAETILNAALDQ 381 (444)
Q Consensus 359 -------a~~l~~~g~~~eA~~~~~~al~~ 381 (444)
|..+.+-|++++|-.-|=.|.+.
T Consensus 231 GvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 231 GVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 33456668888888777666654
No 371
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=84.32 E-value=18 Score=38.00 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=25.9
Q ss_pred HHHHHHHH-----HHHHHhhhhhccCccchhhhccCCCCCCC
Q 013398 407 AVETYTHL-----LAALQVQTKTFSSDKRFYKVCLSPSCPFL 443 (444)
Q Consensus 407 A~~~~~~a-----l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (444)
+...|+.+ +..+|+=-..+-++-|-++|--...|||-
T Consensus 1031 r~~y~rNilPd~~it~Cp~C~~~F~~eDFEl~vLqKGHCPFC 1072 (1081)
T KOG1538|consen 1031 RWQYFRNLLPDASITMCPSCFQMFHSEDFELLVLQKGHCPFC 1072 (1081)
T ss_pred chHHHHhhCCcchhhhCchHHhhhccchhhHHHHhcCCCCcc
Confidence 44555554 34566555577788888899889999983
No 372
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=83.84 E-value=6.4 Score=39.05 Aligned_cols=83 Identities=7% Similarity=-0.141 Sum_probs=51.2
Q ss_pred cCCHHHHHHHHHHHHhhcC-CCC-------hH--HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013398 330 QRKLNAAHYYAKMLLKLEG-GSN-------LK--GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL 399 (444)
Q Consensus 330 ~g~~~~A~~~~~~al~l~P-~~~-------~~--~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~ 399 (444)
.|++..|++.+.+.-.+.- ..+ +. .--.+..+|.+.++.+-|+....+.|.++| .++.-+...|.++.
T Consensus 196 a~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP--~~frnHLrqAavfR 273 (569)
T PF15015_consen 196 AGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP--SYFRNHLRQAAVFR 273 (569)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc--chhhHHHHHHHHHH
Confidence 3566666666666654432 211 01 112466777777777777777777777777 66666777777777
Q ss_pred HhCCHHHHHHHHHHH
Q 013398 400 VQGQLKGAVETYTHL 414 (444)
Q Consensus 400 ~~g~~~~A~~~~~~a 414 (444)
.+.+|.+|-...--+
T Consensus 274 ~LeRy~eAarSamia 288 (569)
T PF15015_consen 274 RLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777766554444
No 373
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=83.45 E-value=5.2 Score=45.06 Aligned_cols=119 Identities=14% Similarity=-0.037 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-------CCCChHHHHHHHHHHHHccCHHHH
Q 013398 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-------GGSNLKGWLLMARILSAQKRYEDA 371 (444)
Q Consensus 299 ~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~~~~~~la~~l~~~g~~~eA 371 (444)
.+++..+....+.+.|+.+..+..|+.++.+.|+.++|+..-.++.-+. +-+....+.+++...+..+....|
T Consensus 955 ~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~a 1034 (1236)
T KOG1839|consen 955 PESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGA 1034 (1236)
T ss_pred hhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccch
Confidence 3455588866657899999999999999999999999999988776543 222246788999999999999999
Q ss_pred HHHHHHHHhh--------cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013398 372 ETILNAALDQ--------TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 372 ~~~~~~al~~--------~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
+..+.++..+ .| .-.....+++.++...++++.|+...+.|+++..
T Consensus 1035 l~~~~ra~~l~~Ls~ge~hP--~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1035 LKSLNRALKLKLLSSGEDHP--PTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred hhhHHHHHHhhccccCCCCC--chhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 9999998864 35 4556667889999999999999999999999544
No 374
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.16 E-value=16 Score=37.41 Aligned_cols=129 Identities=12% Similarity=-0.006 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHccCHHHHHHHH
Q 013398 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 299 ~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
....+.+.... ..-|+++...++-+..+...|+.+.|+..++..+. +... .-++.-+|++..-+.+|..|-..+
T Consensus 250 ~~~~~~Ll~~~-~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~ 326 (546)
T KOG3783|consen 250 EECEKALKKYR-KRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSF 326 (546)
T ss_pred HHHHHHhHHHH-HhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45566666677 88899999999999999999999999999999988 3321 245567889999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHH--------HHhCCHHHHHHHHHHHHHHHHhhhhhccCccch
Q 013398 376 NAALDQTGKWEQGELLRTKAKVQ--------LVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF 431 (444)
Q Consensus 376 ~~al~~~P~~~~~~~~~~la~~~--------~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~ 431 (444)
+...+++. |...-.-|..|-++ ...|+.+.|-...+..-++-..-.++.-.++|.
T Consensus 327 ~~L~desd-WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~ 389 (546)
T KOG3783|consen 327 DLLRDESD-WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI 389 (546)
T ss_pred HHHHhhhh-hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH
Confidence 99988764 44444334443443 334566666666666666555444555555554
No 375
>PRK12798 chemotaxis protein; Reviewed
Probab=83.09 E-value=53 Score=32.84 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013398 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 347 (444)
+|..++..-...|+.+-|.-.-++|+.+.
T Consensus 259 lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 259 LYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 33444555555566666666666665554
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.76 E-value=4.4 Score=38.25 Aligned_cols=57 Identities=18% Similarity=-0.007 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013398 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (444)
Q Consensus 321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a 378 (444)
...+..|.+.|.+.+|+.+.++++.++|-+ .+.|..+-.++...|+--.|+..|++-
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~-e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLS-EQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 445666778888888888888888888887 488888888888888877777776654
No 377
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=82.61 E-value=70 Score=33.86 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=18.0
Q ss_pred HHHHHHHHHCCCchHHHHHHHHhh
Q 013398 199 HILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 199 ~~la~~l~~~g~~~~A~~~~~~al 222 (444)
..+|.++.-.|++.||-+.|.+.=
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcC
Confidence 346777778888888888887754
No 378
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=81.76 E-value=6.9 Score=39.08 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhc--------CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013398 166 HLSFAFSIAGDLSSLATQIEELL--------PGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 166 ~lg~~l~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
-|.+++.-.|||..|++.++-.= +..+-+...+|..|.+|+-++||.+|++.|..+|
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34468888999999999877541 2223456789999999999999999999999999
No 379
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=80.93 E-value=56 Score=32.52 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=36.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcC----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 324 SLEYAEQRKLNAAHYYAKMLLKLEG----GSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 324 g~~~~~~g~~~~A~~~~~~al~l~P----~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
=..|...+.++.|.+...+..--.. +. +...+.+|.+..-+++|..|..++-+|+...|
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~-ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEW-ARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHH-HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 3445556667777777666642111 11 23445667777777777777777777777777
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.62 E-value=2.5 Score=27.80 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=22.8
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHhh
Q 013398 198 YHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 198 ~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
.+.||.+|..+|+.+.|...+++++
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH
Confidence 3678999999999999999999999
No 381
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=80.26 E-value=59 Score=31.49 Aligned_cols=52 Identities=10% Similarity=0.118 Sum_probs=32.0
Q ss_pred HHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013398 204 CYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALE 260 (444)
Q Consensus 204 ~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~ 260 (444)
.-.+..+.++=++.-..++ .+||+...++..++.- ..--..+|...++++++
T Consensus 193 ~AWRERnp~~RI~~A~~AL--eIN~eCA~AyvLLAEE---Ea~Ti~~AE~l~k~ALk 244 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQAL--EINNECATAYVLLAEE---EATTIVDAERLFKQALK 244 (556)
T ss_pred HHHHhcCcHHHHHHHHHHH--hcCchhhhHHHhhhhh---hhhhHHHHHHHHHHHHH
Confidence 3344455666677777777 7788777777655432 22334567777777766
No 382
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=79.32 E-value=27 Score=33.72 Aligned_cols=84 Identities=18% Similarity=0.057 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--------------C--------ChHH
Q 013398 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG--------------S--------NLKG 354 (444)
Q Consensus 297 ~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--------------~--------~~~~ 354 (444)
+..+-|+.-..++ ++||..+.++..|+---. --+.+|.+.+++|++.-.. . .+..
T Consensus 199 np~~RI~~A~~AL-eIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~ 275 (556)
T KOG3807|consen 199 NPPARIKAAYQAL-EINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLV 275 (556)
T ss_pred CcHHHHHHHHHHH-hcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhh
Confidence 4456677888899 999999999888875433 3467788888887763211 0 0111
Q ss_pred --HHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 355 --WLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 355 --~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
-..|+.+-.++||..||++.++...+..|
T Consensus 276 YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 23678899999999999999998888877
No 383
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.16 E-value=5.5 Score=23.22 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013398 332 KLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (444)
Q Consensus 332 ~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (444)
+.+.|...|++++...|.+ ...|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~-~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKS-VELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCC-hHHHHHH
Confidence 4445555555555555544 2555443
No 384
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.65 E-value=59 Score=33.88 Aligned_cols=115 Identities=20% Similarity=0.096 Sum_probs=79.9
Q ss_pred ccCCCcHHHHHHHHHHHHH-------HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc-------C--C-----
Q 013398 132 FVPRNNIEEAILLLMILLR-------KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELL-------P--G----- 190 (444)
Q Consensus 132 ~~~~~~~~eAi~~l~~~~~-------~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al-------~--~----- 190 (444)
|.+.+-|+++...+..+.. -.++...|...+....++.+...+|+.+.|....+|+| . +
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 3456678888776644411 12334557788899999999999999999888877774 1 1
Q ss_pred -------CCCCHH---HHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC-ChHHHHHHHHHHhcCCCCH
Q 013398 191 -------IINRKE---RYHILALCYYGAGEDLVALNLLRTLLSGSEDPK-CLPALLIASKICGEYPDLA 248 (444)
Q Consensus 191 -------~p~~~~---~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~-~~~a~~~~~~~~~~~~~~~ 248 (444)
.|.|-. +.+..-..+.+.|-+..|....+-.+ .++|. +|.+......++.....++
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlll--sLdp~eDPl~~l~~ID~~ALrareY 394 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLL--SLDPSEDPLGILYLIDIYALRAREY 394 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCcCCchhHHHHHHHHHHHHHhH
Confidence 233332 23334567778999999999999999 99999 8887766655544333333
No 385
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=78.43 E-value=17 Score=29.72 Aligned_cols=26 Identities=12% Similarity=-0.060 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013398 391 LRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
..++|.....+|+.+=.+.+++-|-+
T Consensus 53 CHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 53 CHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 45788888888888888888765543
No 386
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.97 E-value=12 Score=33.87 Aligned_cols=56 Identities=9% Similarity=-0.096 Sum_probs=52.4
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013398 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 351 (444)
.++.++|+...+.-+ +-+|.|......|=..|...|++++|...++-+-.+.|++.
T Consensus 14 ~~sL~dai~~a~~qV-kakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 14 DNSLQDAIGLARDQV-KAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hccHHHHHHHHHHHH-hcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 467899999999999 99999999999999999999999999999999999999974
No 387
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=77.84 E-value=38 Score=27.97 Aligned_cols=48 Identities=17% Similarity=0.027 Sum_probs=31.9
Q ss_pred HHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHH
Q 013398 171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR 219 (444)
Q Consensus 171 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~ 219 (444)
+...+.+...+..++.++..++.++..+..+..+|...+ ..+.+..++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 344567778888888888877777777777777776543 334444444
No 388
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.72 E-value=22 Score=31.50 Aligned_cols=49 Identities=22% Similarity=0.089 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 333 LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 333 ~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
.+..++..++.+.-.|+ + ..+..++.++..+|+.++|..+.+++....|
T Consensus 127 l~~~~~~a~~~l~~~P~-~-~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-P-NVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33444555555666665 2 5666666666666666666666666666666
No 389
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.54 E-value=4.4 Score=26.64 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 013398 321 YRLSLEYAEQRKLNAAHYYAKMLLK 345 (444)
Q Consensus 321 ~~lg~~~~~~g~~~~A~~~~~~al~ 345 (444)
++|+.+|.++|+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677777777777777777777773
No 390
>PF12854 PPR_1: PPR repeat
Probab=77.39 E-value=5.4 Score=24.36 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHH
Q 013398 195 KERYHILALCYYGAGEDLVALNLLR 219 (444)
Q Consensus 195 ~~~~~~la~~l~~~g~~~~A~~~~~ 219 (444)
.-.|..+-..|.+.|+.++|.+.|+
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444445555555555555555544
No 391
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=76.83 E-value=1.2e+02 Score=33.09 Aligned_cols=107 Identities=15% Similarity=0.014 Sum_probs=74.7
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH---CCCchHHHHHHHHhhcCCCCCC
Q 013398 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG---AGEDLVALNLLRTLLSGSEDPK 229 (444)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~---~g~~~~A~~~~~~al~~~~~P~ 229 (444)
-+..++.+...+..|-.++...|++++-...=+.+-.+.|-.+..|.....-... .+...++...|++++ .+-+
T Consensus 105 e~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal---~dy~ 181 (881)
T KOG0128|consen 105 ELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKAL---GDYN 181 (881)
T ss_pred HhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHh---cccc
Confidence 4567788888888888889999999888777777778888888888876543332 367788999999999 5666
Q ss_pred ChHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHc
Q 013398 230 CLPALLIASKICGE------YPDLAEEGATFASRALECL 262 (444)
Q Consensus 230 ~~~a~~~~~~~~~~------~~~~~~eA~~~~~~al~~~ 262 (444)
.+..+...+...+. ..+.++.-...|.+++.-.
T Consensus 182 ~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~ 220 (881)
T KOG0128|consen 182 SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSL 220 (881)
T ss_pred cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhh
Confidence 66555433333222 2345556666777777643
No 392
>PF13041 PPR_2: PPR repeat family
Probab=75.64 E-value=9.5 Score=25.34 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013398 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (444)
Q Consensus 194 ~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~ 230 (444)
+...|..+-..+.+.|++++|.+.|++-.+....|+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~ 38 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDS 38 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 3445666777777777777777777777654455653
No 393
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=75.29 E-value=21 Score=30.08 Aligned_cols=53 Identities=9% Similarity=-0.082 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCH
Q 013398 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY 368 (444)
Q Consensus 315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~ 368 (444)
...+.....+......|++.-|......++..+|++ ..+...++.++..+|.-
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n-~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDN-EEARQLKADALEQLGYQ 120 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHh
Confidence 345666667777777777777777777777777777 37777777666555543
No 394
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.95 E-value=1.1e+02 Score=31.66 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=35.2
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH--------------------ccCHHHHHHHHHHHHhhcC
Q 013398 328 AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA--------------------QKRYEDAETILNAALDQTG 383 (444)
Q Consensus 328 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~--------------------~g~~~eA~~~~~~al~~~P 383 (444)
....++++|++..+..++++..+ ..+.-.+-..+.. -.++.+++.-|++.+-.+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~-~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKD-VWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchh-hhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheecc
Confidence 34567777888887777777776 3555555444444 3456677777777665554
No 395
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=73.98 E-value=7.4 Score=28.87 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhh
Q 013398 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESS 43 (444)
Q Consensus 10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~ 43 (444)
+-.+..+|+-+.+.|++++|+..|+.+|+.+-+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999876554
No 396
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.23 E-value=46 Score=33.17 Aligned_cols=121 Identities=17% Similarity=0.053 Sum_probs=66.7
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHhhcC---CCChHHHHHHHHHHHHccC
Q 013398 295 ATRQAKALQALVSAARSTNMRDLS--ILYRL--SLEYAEQRKLNAAHYYAKMLLKLEG---GSNLKGWLLMARILSAQKR 367 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~--a~~~l--g~~~~~~g~~~~A~~~~~~al~l~P---~~~~~~~~~la~~l~~~g~ 367 (444)
.++|..|.+.|...+ ..=|.+.. .+..+ |.-+...-++.+|.+.+++.+...- .. ...+..+..+......
T Consensus 144 ~~~y~aA~~~l~~l~-~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~-~~~l~~~~~~~~~~~~ 221 (379)
T PF09670_consen 144 RYDYGAAARILEELL-RRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQE-REGLKELVEVLKALES 221 (379)
T ss_pred cCCHHHHHHHHHHHH-HhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhH-HHHHHHHHHHHHHHHh
Confidence 467899999999999 64344433 44444 5556688999999999999877521 11 1233333333322222
Q ss_pred HHHHHHHHHHHHhhcCCCCcHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013398 368 YEDAETILNAALDQTGKWEQGEL--LRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 368 ~~eA~~~~~~al~~~P~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
+...........+ .| ....+ ++..|.--..+|+|+.|+..+=+++++.-.
T Consensus 222 ~~~~~~~~~~~~~-~~--~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 222 ILSALEDKKQRQK-KL--YYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred hccchhhhhcccc-cc--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 2222221111100 00 01111 122222234579999999999888886543
No 397
>PF12854 PPR_1: PPR repeat
Probab=72.40 E-value=10 Score=23.11 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q 013398 353 KGWLLMARILSAQKRYEDAETILN 376 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~ 376 (444)
..|..+-..+.+.|+.++|+..++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444444445555555555555444
No 398
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.04 E-value=36 Score=31.01 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=52.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 326 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
.+.+.+.+.+|+...+.-++-+|.+. .+...+=.+|.-.|++++|...++-+-.+.|
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda-~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDA-GGRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccc-cchhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 45677899999999999999999994 8888888889999999999999999999998
No 399
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.92 E-value=11 Score=33.45 Aligned_cols=52 Identities=12% Similarity=-0.005 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013398 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
+..+..++..++.+ ...| ++.++.+++.++..+|+.++|....+++..+-|.
T Consensus 125 ~~l~~~~~~a~~~l-~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 125 EMLEAYIEWAERLL-RRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHH-HhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45566777778888 7777 5788888888888888888888888888888884
No 400
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=71.12 E-value=75 Score=28.17 Aligned_cols=185 Identities=11% Similarity=0.020 Sum_probs=115.1
Q ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH-----CCCchHHHHHHHHhhcCCCCCCChH
Q 013398 159 WDPSILDHLSFAFSI-AGDLSSLATQIEELLPGIINRKERYHILALCYYG-----AGEDLVALNLLRTLLSGSEDPKCLP 232 (444)
Q Consensus 159 ~~~~~~~~lg~~l~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-----~g~~~~A~~~~~~al~~~~~P~~~~ 232 (444)
..|+.-++||.-+.. +.+|++|..+|..--.- ...+...|.+|.-++. .+....|++.|+.+. +-+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCde-n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC----~~n~~~ 106 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDE-NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIAC----DANIPQ 106 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHh----ccCCHH
Confidence 467777888876654 57899999999877664 3577888888876553 347788999999988 456677
Q ss_pred HHHHHHHHHhc----CCCC--HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHH
Q 013398 233 ALLIASKICGE----YPDL--AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (444)
Q Consensus 233 a~~~~~~~~~~----~~~~--~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~ 306 (444)
+...++-+... ...+ ...|..+++|+-+... ..+-++|...+..- .++
T Consensus 107 aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~-------~~aCf~LS~m~~~g-------------~~k------ 160 (248)
T KOG4014|consen 107 ACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED-------GEACFLLSTMYMGG-------------KEK------ 160 (248)
T ss_pred HHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC-------chHHHHHHHHHhcc-------------chh------
Confidence 77666554432 1122 5689999999887422 23455555444321 111
Q ss_pred HHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc----cCHHHHHHHHHHHHh
Q 013398 307 SAARSTNM--RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ----KRYEDAETILNAALD 380 (444)
Q Consensus 307 ~al~~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~----g~~~eA~~~~~~al~ 380 (444)
+. .-.| ..|...-.+|.+ .++.+.|.++--+|.+++- + .+--++...|..- ++-++|..+-++|.+
T Consensus 161 -~~-t~ap~~g~p~~~~~~~~~---~kDMdka~qfa~kACel~~--~-~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 161 -FK-TNAPGEGKPLDRAELGSL---SKDMDKALQFAIKACELDI--P-QACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred -hc-ccCCCCCCCcchhhhhhh---hHhHHHHHHHHHHHHhcCC--h-HHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 22 2234 222222333333 5788899999999988863 3 4445555554322 356677777777765
Q ss_pred hc
Q 013398 381 QT 382 (444)
Q Consensus 381 ~~ 382 (444)
+.
T Consensus 233 ~~ 234 (248)
T KOG4014|consen 233 IM 234 (248)
T ss_pred HH
Confidence 53
No 401
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=70.26 E-value=60 Score=26.75 Aligned_cols=44 Identities=16% Similarity=0.037 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013398 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAK 341 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 341 (444)
+.....+..++.++ ..++.++..+..+..+|.+. +..+.+..++
T Consensus 21 ~~~~~l~~yLe~~~-~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 21 NLLEELIPYLESAL-KLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred CcHHHHHHHHHHHH-ccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 35678899999999 88898999999999888865 4556666666
No 402
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.34 E-value=9.1 Score=28.50 Aligned_cols=32 Identities=19% Similarity=0.037 Sum_probs=27.5
Q ss_pred HHHHHHHhhhhcccchHHHHHHHHHHHHHHHh
Q 013398 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVES 42 (444)
Q Consensus 11 ~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~ 42 (444)
-.+..+|+-..+.|+|++|+..|..+|+.+-.
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999987533
No 403
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=69.08 E-value=74 Score=30.14 Aligned_cols=132 Identities=16% Similarity=0.136 Sum_probs=73.6
Q ss_pred HHHhcCCHHHHHHHHHhhcCCCCC----CHHHHHHHHHH--HHHCCCch----HHHHHHHHhhcCCCCCCChHHHHHHHH
Q 013398 170 AFSIAGDLSSLATQIEELLPGIIN----RKERYHILALC--YYGAGEDL----VALNLLRTLLSGSEDPKCLPALLIASK 239 (444)
Q Consensus 170 ~l~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~--l~~~g~~~----~A~~~~~~al~~~~~P~~~~a~~~~~~ 239 (444)
.+...|+|++--+.|++..+.... ... |+..-.. +....... .-.+.++.-+ +..|++..+++..|.
T Consensus 9 ~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv--~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 9 ELLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWV--AACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHH--HHCCCChHHHHHHHH
Confidence 355677887777777777644322 222 2221111 22222111 3567778888 789999888887665
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHH
Q 013398 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI 319 (444)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a 319 (444)
.+.. .|+...|..+...-..+ .+..-....+.|...+.+|+ +++|....+
T Consensus 86 ~~~~----------------------------~Aw~~RG~~~A~~V~~~-~W~~~~~~~d~A~~~ll~A~-~l~pr~~~A 135 (277)
T PF13226_consen 86 YWVH----------------------------RAWDIRGSGYASTVTEA-QWLGAHQACDQAVAALLKAI-ELSPRPVAA 135 (277)
T ss_pred HHHH----------------------------HHHHHHccchhcccCHH-HHHHHHHHHHHHHHHHHHHH-hcCCCchHH
Confidence 5422 22333333322210000 00001123588999999999 999999988
Q ss_pred HHHHHHHHHHcCCHH
Q 013398 320 LYRLSLEYAEQRKLN 334 (444)
Q Consensus 320 ~~~lg~~~~~~g~~~ 334 (444)
...+-.+-...|..+
T Consensus 136 ~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 136 AIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHhhcCCch
Confidence 877766655555443
No 404
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=68.44 E-value=9.3 Score=27.60 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=27.3
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHhh
Q 013398 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESS 43 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~ 43 (444)
.+..+|...++.|++++|+..|..+++.+.+.
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999876443
No 405
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=68.04 E-value=40 Score=28.17 Aligned_cols=63 Identities=19% Similarity=0.051 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013398 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
+.+....--.++..+|+-++--..+....+-+..+|+....+|.+|...|...+|-..+++|.
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 444444444578889999999999999988777889999999999999999999999999998
No 406
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=67.80 E-value=4.4 Score=39.19 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013398 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK 396 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~ 396 (444)
.....+++.+-...+.+..|+.....+++.++.. ..+++..+..+....++++|+..+..+....| ++..+...+..
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~-tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p--~d~~i~~~~~~ 351 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSK-TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAP--NDKAIEEELEN 351 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhh-CcHHHHHHhHHHhhhchhhhHHHHHHhhccCc--chHHHHHHHHH
Confidence 3444567888888899999999888888888887 48888899999999999999999999999999 77665444433
No 407
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=67.57 E-value=12 Score=28.08 Aligned_cols=33 Identities=18% Similarity=0.067 Sum_probs=28.8
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhh
Q 013398 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~ 44 (444)
.+-.+|+++++.|+.++|+..|++.|+..+..+
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence 456799999999999999999999998876644
No 408
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.48 E-value=1.6e+02 Score=30.50 Aligned_cols=170 Identities=15% Similarity=0.038 Sum_probs=109.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013398 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (444)
Q Consensus 158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~ 237 (444)
.++.-++..++.+|... ..+.-....+|.++.+-++...--.|+..|.. ++-..+...|.+++. +.-|..-.
T Consensus 96 ~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y-rfI~~~q~----- 167 (711)
T COG1747 96 GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALY-RFIPRRQN----- 167 (711)
T ss_pred cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHH-Hhcchhhh-----
Confidence 66777889999999888 67788888999999999998888888888877 899999999999983 23332100
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---hHHH----HHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHH
Q 013398 238 SKICGEYPDLAEEGATFASRALECLGDGCDQME---STAN----CLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (444)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~---~~a~----~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~ 310 (444)
+ .-.+...+..+..+++.+... .... ...|.++.+.-. -.+....++++|+.....++
T Consensus 168 ~-----------~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~---~~Ys~~eN~~eai~Ilk~il- 232 (711)
T COG1747 168 A-----------AIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY---KKYSENENWTEAIRILKHIL- 232 (711)
T ss_pred h-----------hHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHH---HHhccccCHHHHHHHHHHHh-
Confidence 0 001122222222221111000 0000 011111111100 00112457899999999999
Q ss_pred hhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhcCCC
Q 013398 311 STNMRDLSILYRLSLEYAE--------------------QRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~--------------------~g~~~~A~~~~~~al~l~P~~ 350 (444)
+.|..|.-+.-++-.-+.. -.++.+++..|++.+-.+..+
T Consensus 233 ~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 233 EHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred hhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 9999998888777666655 468889999999998887764
No 409
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=67.24 E-value=1.4e+02 Score=29.73 Aligned_cols=120 Identities=11% Similarity=0.024 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH
Q 013398 296 TRQAKALQALVSAARSTNMRDL-----SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e 370 (444)
..+..=+++++.+++.++|+.. ..|+-+|.+|..+=++.-....-...-...|++ ..... -..--..
T Consensus 196 kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~--~~~~k------in~l~~~ 267 (371)
T PF12309_consen 196 KMHKRRADLLEPLLKELNPQYYLNLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDD--HALKK------INQLCSK 267 (371)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCh--HHHHH------HHHHHHH
Confidence 3455556677777767788653 356777877766533311110000000111221 22111 1123346
Q ss_pred HHHHHHHHHhh--cCC------C-------CcHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHhhhh
Q 013398 371 AETILNAALDQ--TGK------W-------EQGELLRTKAKVQLVQ---------GQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 371 A~~~~~~al~~--~P~------~-------~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~l~~~~~~ 423 (444)
|+.+|+..++. .|+ . ....++|++|.++.+. +....++..|+.+++.+.++..
T Consensus 268 ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 268 AIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 77777777754 231 0 1246788999988665 6677899999999999998887
No 410
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=67.23 E-value=1.1e+02 Score=28.36 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013398 197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (444)
Q Consensus 197 ~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~ 230 (444)
-...+|.+....|||++.+...++++ ..+|+-
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~--~~~~eL 34 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLI--EMNPEL 34 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH--HTSS--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH--ccCCCC
Confidence 35678999999999999999999999 677763
No 411
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=66.88 E-value=28 Score=25.85 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013398 370 DAETILNAALDQTGKWEQGELLRTKAK 396 (444)
Q Consensus 370 eA~~~~~~al~~~P~~~~~~~~~~la~ 396 (444)
+|+..+.+++...| |+..-...+..
T Consensus 31 ~aIe~L~q~~~~~p--D~~~k~~yr~k 55 (75)
T cd02682 31 KAIEVLSQIVKNYP--DSPTRLIYEQM 55 (75)
T ss_pred HHHHHHHHHHHhCC--ChHHHHHHHHH
Confidence 33334444445567 55544443333
No 412
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=65.89 E-value=13 Score=21.82 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=13.2
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHhh
Q 013398 198 YHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 198 ~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
|..+-..|.+.|++++|...|++-.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344445555555555555555544
No 413
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=65.66 E-value=29 Score=29.26 Aligned_cols=52 Identities=19% Similarity=0.068 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHH
Q 013398 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKG 406 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~ 406 (444)
+.....+.-....|+|.-|....+.++..+| +|..+...++.++.++|.-.+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp--~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADP--DNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHhcc
Confidence 5556666666778888888888888888888 888888888888888876554
No 414
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=65.49 E-value=1.2e+02 Score=28.26 Aligned_cols=56 Identities=11% Similarity=0.152 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCC-CC--CCHHHHHHHHHHHHHC-CCchHHHHHHHHh
Q 013398 166 HLSFAFSIAGDLSSLATQIEELLPG-II--NRKERYHILALCYYGA-GEDLVALNLLRTL 221 (444)
Q Consensus 166 ~lg~~l~~~g~~~~A~~~~~~al~~-~p--~~~~~~~~la~~l~~~-g~~~~A~~~~~~a 221 (444)
.++.+..+.++|++.+.+..+++.. +| -+.+-..-|..+|-.. |....++..+...
T Consensus 6 ~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~si 65 (244)
T smart00101 6 YMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSI 65 (244)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHH
Confidence 4566677789999999999998876 44 4667777777777664 7778888887763
No 415
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.43 E-value=70 Score=34.82 Aligned_cols=59 Identities=10% Similarity=-0.072 Sum_probs=35.7
Q ss_pred HHhcCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh
Q 013398 171 FSIAGDLSSLATQIEELLPGIIN-RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (444)
Q Consensus 171 l~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~ 231 (444)
+.+..-|+-|+..-..- ..+++ -.+.+-..|.-++..|++++|...|.++|. .++|..+
T Consensus 344 L~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~-~le~s~V 403 (933)
T KOG2114|consen 344 LFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG-FLEPSEV 403 (933)
T ss_pred HHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc-cCChHHH
Confidence 34444455555433221 22222 235566778888888888888888888885 5666543
No 416
>PF13041 PPR_2: PPR repeat family
Probab=64.87 E-value=31 Score=22.73 Aligned_cols=29 Identities=7% Similarity=0.132 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013398 353 KGWLLMARILSAQKRYEDAETILNAALDQ 381 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~ 381 (444)
..|..+-..+.+.|++++|...|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 56666666777777777777777776654
No 417
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=64.03 E-value=17 Score=27.33 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013398 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (444)
Q Consensus 297 ~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 345 (444)
.|++|.+...+++ ..| +.|+.++|+.+|++++.
T Consensus 4 ~~~~A~~~I~kaL-~~d---------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKAL-RAD---------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHh-hhh---------------hcCCHHHHHHHHHHHHH
Confidence 3566666666666 333 33566666666666654
No 418
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=63.97 E-value=12 Score=27.84 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=27.4
Q ss_pred HHHHHHHhhhhcccchHHHHHHHHHHHHHHHh
Q 013398 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVES 42 (444)
Q Consensus 11 ~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~ 42 (444)
-.+..+|....+.|+|++|+..|.++|+.+-+
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999987644
No 419
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=62.81 E-value=7.6 Score=37.64 Aligned_cols=69 Identities=12% Similarity=-0.085 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013398 164 LDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (444)
Q Consensus 164 ~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~ 234 (444)
+.+++..-...+.+..|+..-..++..+++...+++..|..+....++++|++.++.+. ...|++....
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~--~~~p~d~~i~ 346 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAK--QKAPNDKAIE 346 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhh--ccCcchHHHH
Confidence 34477777788888888888888888999999999999999999999999999999999 8999987654
No 420
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=62.78 E-value=16 Score=36.52 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=33.2
Q ss_pred HhhHHHHHHHHHHHH-------HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013398 295 ATRQAKALQALVSAA-------RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (444)
Q Consensus 295 ~~~~~eA~~~~~~al-------~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 345 (444)
.|+|..|++.++-+- ...-+-+...+|+.|.+|..+++|.+|++.|...+-
T Consensus 135 LGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 135 LGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred ccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777877765331 011123345667888888888888888888877754
No 421
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=62.14 E-value=57 Score=32.47 Aligned_cols=104 Identities=17% Similarity=0.252 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hcCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHH--hhcCCCCcHH
Q 013398 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLK---LEGGS--NLKGWLLMARILSAQKRYEDAETILNAAL--DQTGKWEQGE 389 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~--~~~~~~~la~~l~~~g~~~eA~~~~~~al--~~~P~~~~~~ 389 (444)
+..|+.+..++...|++..=...+..-+. +.-+. .+...+.|-..|...+-|+.|-....+.. +...+++-..
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 45688899999999987765555554443 33222 12334455667777899999988887765 1111112356
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013398 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 390 ~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
.+|.+|.+..-+++|..|.+++-+++...|.
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 6788999999999999999999999999996
No 422
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=60.81 E-value=20 Score=25.84 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013398 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
..|.-....|++++|+..|.++++....-
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 34444455666666666666666655433
No 423
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=59.14 E-value=25 Score=32.26 Aligned_cols=21 Identities=19% Similarity=-0.091 Sum_probs=14.4
Q ss_pred HhcCCCCHHHHHHHHHHHHHH
Q 013398 241 CGEYPDLAEEGATFASRALEC 261 (444)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~ 261 (444)
.....|+++.|+.+.+.+|+.
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~ 112 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEH 112 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHc
Confidence 344567777777777777775
No 424
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.93 E-value=92 Score=33.61 Aligned_cols=187 Identities=14% Similarity=0.089 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Q 013398 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL--------PALLIASKICGEYPDLAEEGATFASRALECLGDG 265 (444)
Q Consensus 194 ~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~--------~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~ 265 (444)
.++...++-..|....+|+.-++..+..- .-|+.. ..++.-+---....|+-+.|+...-.+++...+.
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk---~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLK---RIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHH---hCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 57788888888988888887777666543 345321 1111111111234577778888888888864443
Q ss_pred cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 013398 266 CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR-KLNAAHYYAKMLL 344 (444)
Q Consensus 266 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al 344 (444)
. ...+..-|.+|..+-. .+.+...+..+.|+++|+++. +..|.-... .|++.++...| .++...+.=.-.+
T Consensus 277 a----pDm~Cl~GRIYKDmF~--~S~ytDa~s~~~a~~WyrkaF-eveP~~~sG-IN~atLL~aaG~~Fens~Elq~Igm 348 (1226)
T KOG4279|consen 277 A----PDMYCLCGRIYKDMFI--ASNYTDAESLNHAIEWYRKAF-EVEPLEYSG-INLATLLRAAGEHFENSLELQQIGM 348 (1226)
T ss_pred C----Cceeeeechhhhhhhh--ccCCcchhhHHHHHHHHHHHh-ccCchhhcc-ccHHHHHHHhhhhccchHHHHHHHH
Confidence 2 3467778888865422 122233456789999999999 999976543 45555555554 4555555544445
Q ss_pred hhcCCC----Ch---HHHHHHHHHHHH---ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013398 345 KLEGGS----NL---KGWLLMARILSA---QKRYEDAETILNAALDQTGKWEQGELLRTKAK 396 (444)
Q Consensus 345 ~l~P~~----~~---~~~~~la~~l~~---~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~ 396 (444)
.++.-- .. .-|...|..+-. .++|.+|+.+-+...++.| . +||....
T Consensus 349 kLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~--P---~WYLkS~ 405 (1226)
T KOG4279|consen 349 KLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKP--P---VWYLKST 405 (1226)
T ss_pred HHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCC--c---eehHHHH
Confidence 544210 00 111112222211 3799999999999999988 3 4555433
No 425
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=58.36 E-value=21 Score=21.84 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=15.0
Q ss_pred HHHHHHHH--HHHHHcC-----CHHHHHHHHHHHHh
Q 013398 317 LSILYRLS--LEYAEQR-----KLNAAHYYAKMLLK 345 (444)
Q Consensus 317 ~~a~~~lg--~~~~~~g-----~~~~A~~~~~~al~ 345 (444)
|++.+.+| .++..-. +.++|+..|++|.+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 34556666 4333322 35566666666644
No 426
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=58.18 E-value=15 Score=21.01 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcC
Q 013398 164 LDHLSFAFSIAGDLSSLATQIEELLP 189 (444)
Q Consensus 164 ~~~lg~~l~~~g~~~~A~~~~~~al~ 189 (444)
|..+-.++.+.|++++|.+.|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44455556666666666666665543
No 427
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.76 E-value=88 Score=31.20 Aligned_cols=61 Identities=13% Similarity=-0.077 Sum_probs=41.4
Q ss_pred HHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH--HHHHHH-HHHhcCCCCHHHHHHHHHHHHHH
Q 013398 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP--ALLIAS-KICGEYPDLAEEGATFASRALEC 261 (444)
Q Consensus 199 ~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~--a~~~~~-~~~~~~~~~~~eA~~~~~~al~~ 261 (444)
...+..+++.++|..|.+.|...+ ..-|+... .+..+. +......-++++|.+.+++.+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~--~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELL--RRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH--HhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456778899999999999999999 43344333 221111 11234567788999999888773
No 428
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=56.57 E-value=26 Score=25.79 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=28.1
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhh
Q 013398 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~ 44 (444)
.+..+|+..++.|++++|+..|.++++.+....
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 355689999999999999999999998876544
No 429
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=56.31 E-value=80 Score=31.19 Aligned_cols=121 Identities=15% Similarity=-0.038 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhhCCC------CHHHHHHH-HHHHHH-------cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 013398 298 QAKALQALVSAARSTNMR------DLSILYRL-SLEYAE-------QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~------~~~a~~~l-g~~~~~-------~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~ 363 (444)
..+.+..|+..+ ...++ -.+-+.-+ +.++.. .+.+-+|+-.++.++..+|.+. .....+..+|.
T Consensus 151 ~~~~~~~y~~~l-~~~~~l~te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~-~~~LlLvrlY~ 228 (365)
T PF09797_consen 151 AQELLKLYQESL-SLGKDLKTESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNY-QLKLLLVRLYS 228 (365)
T ss_pred HHHHHHHHHhhC-ccccccccccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHH
Confidence 556677788877 66431 11222222 223322 2445578888888888888884 88888888888
Q ss_pred HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHhhh
Q 013398 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAV-ETYTHLLAALQVQT 422 (444)
Q Consensus 364 ~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~~~~~ 422 (444)
.+|-...|...|... ++.--..+...++ ...-....|....+. ..+..++.++....
T Consensus 229 ~LG~~~~A~~~~~~L-~iK~IQ~DTL~h~-~~~r~~~~~~~~~~~~~~~~~~~~fy~~~~ 286 (365)
T PF09797_consen 229 LLGAGSLALEHYESL-DIKNIQLDTLGHL-ILDRLSTLGPFKSAPENLLENALKFYDNSE 286 (365)
T ss_pred HcCCHHHHHHHHHhc-ChHHHHHHHhHHH-HHHHHhccCcccccchHHHHHHHHHHHHHH
Confidence 888888888888533 2111000111222 222234466777776 88888888776444
No 430
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=55.28 E-value=3.9 Score=42.75 Aligned_cols=115 Identities=21% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH--
Q 013398 304 ALVSAARSTNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLL--KLEGGSNLKGWLLMARILSAQKRYEDAETILNAA-- 378 (444)
Q Consensus 304 ~~~~al~~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al--~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a-- 378 (444)
++.+|- ...+.. ...+..-+.++...|+++.|...+.+.- .++|..........+.+...+|++++|+..+...
T Consensus 11 yL~~A~-~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~ 89 (536)
T PF04348_consen 11 YLQQAQ-QASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDL 89 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH-hcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCc
Confidence 334444 444433 2344555788899999999999999886 5667654456667788999999999999998741
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013398 379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 379 l~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
..+.+ ......+..++.++...|+.-+|...+-.+-.+.++
T Consensus 90 ~~l~~-~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~d 130 (536)
T PF04348_consen 90 WQLPP-EQQARYHQLRAQAYEQQGDPLAAARERIALDPLLPD 130 (536)
T ss_dssp ------------------------------------------
T ss_pred ccCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCC
Confidence 12222 134566677899999999999988887776666553
No 431
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=53.95 E-value=22 Score=26.40 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=24.0
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHH
Q 013398 13 IFLKAKCLQGLGRFKEAAQSCKVILDIV 40 (444)
Q Consensus 13 ~~~~g~~~~~~g~~~~A~~~~~~~l~~~ 40 (444)
+..+|..-...|+|++|++.|.++|+.+
T Consensus 9 Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 9 LVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 4467778888999999999999999875
No 432
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=53.83 E-value=66 Score=26.96 Aligned_cols=49 Identities=8% Similarity=0.044 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013398 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 345 (444)
++.++--+.+.... +-+..+|+.+..+|.+|.+.|+..+|-+..++|.+
T Consensus 100 ~kkDqLdki~~~l~-kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 100 GKKDQLDKIYNELK-KNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp T-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33444444555555 55666777777777777777777777777777765
No 433
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=52.53 E-value=46 Score=19.52 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=10.2
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHH
Q 013398 338 YYAKMLLKLEGGSNLKGWLLMARI 361 (444)
Q Consensus 338 ~~~~~al~l~P~~~~~~~~~la~~ 361 (444)
+...+++..+|.+ ..+|...-.+
T Consensus 4 ~~~~~~l~~~pkn-ys~W~yR~~l 26 (31)
T PF01239_consen 4 EFTKKALEKDPKN-YSAWNYRRWL 26 (31)
T ss_dssp HHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHCccc-ccHHHHHHHH
Confidence 3444444444444 2444444333
No 434
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=52.22 E-value=37 Score=25.22 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=13.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013398 395 AKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
|.-....|++++|+..|.++++....
T Consensus 13 Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 13 AVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 33334455555555555555555443
No 435
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=52.18 E-value=30 Score=25.81 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013398 393 TKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
..|.-....|++++|+..|.++++....
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3444445566677777777666665544
No 436
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=51.87 E-value=30 Score=20.65 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHh
Q 013398 318 SILYRLSLEYAEQ----RKLNAAHYYAKMLLK 345 (444)
Q Consensus 318 ~a~~~lg~~~~~~----g~~~~A~~~~~~al~ 345 (444)
.+.+.||..|..- .+..+|...|+++.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3455566555432 255666666666544
No 437
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=51.41 E-value=29 Score=25.61 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhcccchHHHHHHHHHHHHHHHh
Q 013398 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVES 42 (444)
Q Consensus 11 ~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~ 42 (444)
..+..+|+-....|++++|+..|.++++.+-+
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44667889999999999999999999987644
No 438
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.09 E-value=1.4e+02 Score=27.58 Aligned_cols=72 Identities=14% Similarity=-0.016 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHH
Q 013398 6 ISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMS 85 (444)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~ 85 (444)
.|.....-...|..|+.+|++++|.+.++.+.....+ +. |.. .+...+..+-.++...|+.++.+.+
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~-------eg---W~~---l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR-------EG---WWS---LLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-------CC---cHH---HHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4566666778999999999999999999998654311 11 212 2456777777889999999988776
Q ss_pred HHHHh
Q 013398 86 YRRAL 90 (444)
Q Consensus 86 y~~aL 90 (444)
.=+.+
T Consensus 241 ~leLl 245 (247)
T PF11817_consen 241 SLELL 245 (247)
T ss_pred HHHHh
Confidence 55443
No 439
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.05 E-value=97 Score=28.73 Aligned_cols=46 Identities=13% Similarity=0.043 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013398 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 345 (444)
+..|.+.|++.- . .---......+|..|...|++++|++.|+.+..
T Consensus 161 L~~A~~~f~~~~-~-~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 161 LEKAYEQFKKYG-Q-NRMASYLSLEMAEEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred HHHHHHHHHHhc-c-chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555443 2 111122335667777777777777777777744
No 440
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=48.68 E-value=38 Score=20.58 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHhhcCCCChHHHHHHH
Q 013398 332 KLNAAHYYAKMLLKLEGGSNLKGWLLMA 359 (444)
Q Consensus 332 ~~~~A~~~~~~al~l~P~~~~~~~~~la 359 (444)
.++.|...|++.+...|+ + ..|...|
T Consensus 2 E~dRAR~IyeR~v~~hp~-~-k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-V-KNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-c-hHHHHHH
Confidence 356666666666666665 2 5665544
No 441
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=48.20 E-value=33 Score=25.39 Aligned_cols=31 Identities=16% Similarity=0.031 Sum_probs=25.8
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHh
Q 013398 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVES 42 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~ 42 (444)
.+..+|......|++++|...|.++|+.+-.
T Consensus 8 ~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 8 ALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999987643
No 442
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.00 E-value=73 Score=34.96 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=57.4
Q ss_pred HHhhHHHHHHHHHHHHHhhCC----------CCHHHHHHHHHHHH------------HcCCHHHH--HHHHHHHHhhcCC
Q 013398 294 RATRQAKALQALVSAARSTNM----------RDLSILYRLSLEYA------------EQRKLNAA--HYYAKMLLKLEGG 349 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P----------~~~~a~~~lg~~~~------------~~g~~~~A--~~~~~~al~l~P~ 349 (444)
..|.+.+|++.|+.++ -.-| ...+.+...+.-|. ..+..+.+ +..|=.-..|.|-
T Consensus 1003 t~gKf~eAie~Frsii-~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1003 TEGKFGEAIEKFRSII-YSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred ccCcHHHHHHHHHHHH-hheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 4578999999999988 6554 11222233332221 12455556 4445455677777
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013398 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 350 ~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
|..-++..--.++++.+++..|-....+.+++.|
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~ 1115 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAP 1115 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Confidence 6433444444567888999999999999999998
No 443
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.92 E-value=40 Score=25.01 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=19.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013398 395 AKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
|.-....|++++|+..|.++++.+..
T Consensus 13 A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 13 AFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 33344567888888888888888776
No 444
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=47.27 E-value=40 Score=19.66 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh
Q 013398 164 LDHLSFAFSIAGDLSSLATQIEE 186 (444)
Q Consensus 164 ~~~lg~~l~~~g~~~~A~~~~~~ 186 (444)
|..+-.++.+.|+++.|...|+.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~ 26 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDE 26 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 33344444444444444444443
No 445
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=46.50 E-value=55 Score=34.38 Aligned_cols=56 Identities=14% Similarity=0.011 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHH
Q 013398 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRT 220 (444)
Q Consensus 163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~ 220 (444)
.....+..+...|+.++|-++|++.+..+|+ +.++..|..+.+.|-...|...+++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (578)
T PRK15490 44 AMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILKK 99 (578)
T ss_pred HHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4455567788899999999999999999998 7889999999999999999888874
No 446
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.94 E-value=98 Score=32.55 Aligned_cols=98 Identities=16% Similarity=-0.038 Sum_probs=56.1
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCch
Q 013398 133 VPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDL 212 (444)
Q Consensus 133 ~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~ 212 (444)
.+.|+++.|..+. ...++..=|..||.+....|++..|.++|.++-.+. .|-+++-..|+-+
T Consensus 648 l~lgrl~iA~~la----------~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~--------~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 648 LKLGRLDIAFDLA----------VEANSEVKWRQLGDAALSAGELPLASECFLRARDLG--------SLLLLYTSSGNAE 709 (794)
T ss_pred hhcCcHHHHHHHH----------HhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchh--------hhhhhhhhcCChh
Confidence 3456666665532 224567778899999999999999999999887642 2333444445444
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHH
Q 013398 213 VALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFAS 256 (444)
Q Consensus 213 ~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~ 256 (444)
.-...-..+- +.--.|. + -+++...|+++++++.+.
T Consensus 710 ~l~~la~~~~--~~g~~N~-A-----F~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 710 GLAVLASLAK--KQGKNNL-A-----FLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHHHH--hhcccch-H-----HHHHHHcCCHHHHHHHHH
Confidence 3222222222 1122222 2 223445677777666554
No 447
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.54 E-value=1.5e+02 Score=23.43 Aligned_cols=34 Identities=24% Similarity=0.147 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh
Q 013398 196 ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (444)
Q Consensus 196 ~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~ 231 (444)
-.|-+||.+|.+.|+.+.|.+.|+.-- .+.|...
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEK--alFPES~ 106 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEK--ALFPESG 106 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhh--hhCccch
Confidence 344445555555555555555555444 4455443
No 448
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.45 E-value=1.7e+02 Score=30.93 Aligned_cols=72 Identities=14% Similarity=0.035 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Q 013398 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~ 377 (444)
+-+...+.++|+ .+.|+. +-.+.|+ .+.|+++.|.+...++ ++ ..=|..||.+....|++..|.+++.+
T Consensus 623 Fle~~g~~e~AL-~~s~D~-d~rFela---l~lgrl~iA~~la~e~-----~s-~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 623 FLESQGMKEQAL-ELSTDP-DQRFELA---LKLGRLDIAFDLAVEA-----NS-EVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred HhhhccchHhhh-hcCCCh-hhhhhhh---hhcCcHHHHHHHHHhh-----cc-hHHHHHHHHHHhhcccchhHHHHHHh
Confidence 334445555566 555443 2333333 2356666666554433 33 25666677777777777777777766
Q ss_pred HHh
Q 013398 378 ALD 380 (444)
Q Consensus 378 al~ 380 (444)
|-.
T Consensus 692 a~d 694 (794)
T KOG0276|consen 692 ARD 694 (794)
T ss_pred hcc
Confidence 653
No 449
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=45.01 E-value=29 Score=33.27 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013398 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 297 ~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
...+|+..|++|+ . ..+.|..-+|+..|+.|+.+.||-
T Consensus 15 ~~kkA~~l~~~av-~---------------~Eq~G~l~dai~fYR~AlqI~~di 52 (366)
T KOG2997|consen 15 LAKKAIALYEKAV-L---------------KEQDGSLYDAINFYRDALQIVPDI 52 (366)
T ss_pred HHHHHHHHHHHHH-H---------------HhhcCcHHHHHHHHHhhhcCCchH
Confidence 4578888888888 3 445688999999999999999884
No 450
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.70 E-value=1.6e+02 Score=23.57 Aligned_cols=79 Identities=15% Similarity=-0.071 Sum_probs=40.6
Q ss_pred hcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHH
Q 013398 173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGA 252 (444)
Q Consensus 173 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~ 252 (444)
....+++|..+++=.-.......-+-.-....++++|+|++| +..... .-.|| ...++. +|-.+.|-.+++.
T Consensus 18 G~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pd-L~p~~A---L~a~klGL~~~~e 89 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPD-LEPWAA---LCAWKLGLASALE 89 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GG-GHHHHH---HHHHHCT-HHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCcc-HHHHHH---HHHHhhccHHHHH
Confidence 344556666555433333222233344457889999999999 444441 23444 333332 2334567777777
Q ss_pred HHHHHHH
Q 013398 253 TFASRAL 259 (444)
Q Consensus 253 ~~~~~al 259 (444)
.++.|.-
T Consensus 90 ~~l~rla 96 (116)
T PF09477_consen 90 SRLTRLA 96 (116)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 7776543
No 451
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=44.41 E-value=42 Score=24.55 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=26.8
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHhh
Q 013398 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESS 43 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~ 43 (444)
.+..+|+...+.|++++|+..|..+++.+-..
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 35578899999999999999999999876543
No 452
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=43.72 E-value=50 Score=24.26 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013398 393 TKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
..|.-....|++++|+..|.++++.+..
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3344444566667777777766665543
No 453
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.67 E-value=3.1e+02 Score=26.25 Aligned_cols=117 Identities=12% Similarity=0.203 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----ChHHHHHHHHHHHHccCH
Q 013398 299 AKALQALVSAARSTNMRD-----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-----NLKGWLLMARILSAQKRY 368 (444)
Q Consensus 299 ~eA~~~~~~al~~~~P~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-----~~~~~~~la~~l~~~g~~ 368 (444)
++=++-+.+.+++...+| .++|-++|.-|.+.++.+.+.+.+.+.++-.-.- -.-+-..+|.++..+.=.
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV 171 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVV 171 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHH
Confidence 344555544442444444 5789999999999999999999988876633211 013445678888877777
Q ss_pred HHHHHHHHHHHhhcCCCCcH-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013398 369 EDAETILNAALDQTGKWEQG-ELLRTKAKVQLVQGQLKGAVETYTHLL 415 (444)
Q Consensus 369 ~eA~~~~~~al~~~P~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 415 (444)
++-++..+..++...+|+.- ..-...|.-.+...++.+|-..+-..+
T Consensus 172 ~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 172 EESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 88888888888877755321 222345566666777888876665544
No 454
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=42.17 E-value=57 Score=23.89 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=18.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 394 KAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
.|.-....|++++|+..|.++++....--
T Consensus 14 ~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 14 KALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 44444456777777777777777666533
No 455
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.79 E-value=73 Score=32.16 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=18.8
Q ss_pred HHHHHHHHHCCCchHHHHHHHHhh
Q 013398 199 HILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 199 ~~la~~l~~~g~~~~A~~~~~~al 222 (444)
.+.|.-+...|++.+|+..|+.+|
T Consensus 208 Lk~gyk~~t~gKF~eA~~~Fr~iL 231 (422)
T PF06957_consen 208 LKEGYKLFTAGKFEEAIEIFRSIL 231 (422)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345677788899999999999988
No 456
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.72 E-value=2.3e+02 Score=26.93 Aligned_cols=199 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhh
Q 013398 213 VALNLLRTLLSGSEDPKCLPALLIASKICGE-------YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS 285 (444)
Q Consensus 213 ~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~-------~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~ 285 (444)
.|++.=...+ .-+|....++.+--.+... ...-.+.-+++...++...|.+ ...|...-.++..
T Consensus 50 ~aLklt~eli--d~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~-----YqiW~HR~~~Le~-- 120 (328)
T COG5536 50 RALKLTQELI--DKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKN-----YQIWHHRQWMLEL-- 120 (328)
T ss_pred HHHHHhHHHH--hhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCch-----hhhhHHHHHHHHh--
Q ss_pred hhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHhhcCCCChHHHHHH-
Q 013398 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEY------AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM- 358 (444)
Q Consensus 286 ~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~------~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l- 358 (444)
....++..-...-++.+ ..||.|...|.+.-+++ ..-..+..-.++-..++.-||-++ .||...
T Consensus 121 -------~p~~~~~rEl~itkkll-d~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~-SaW~~r~ 191 (328)
T COG5536 121 -------FPKPSWGRELFITKKLL-DSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNN-SAWHHRY 191 (328)
T ss_pred -------CCCcccchhHHHHHHHh-cccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCCh-HHHHHHH
Q ss_pred --HHHHHHccC------HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhhhhhcc
Q 013398 359 --ARILSAQKR------YEDAETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAALQVQTKTFS 426 (444)
Q Consensus 359 --a~~l~~~g~------~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~ 426 (444)
-...+..|+ +++-+.+.-.++-.+| ++..+|..+--+... .-.+.+-++.+.+-+.+-....--.|
T Consensus 192 ~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p--~~~S~w~y~r~~~~~~~~d~~~~~e~v~~L~k~~~iin~~el~l~ 269 (328)
T COG5536 192 IWIERRFNRGDVISQKYLEKELEYIFDKIFTDP--DNQSVWGYLRGVSSEFATDIVMIGEKVEDLGKYIVIINGKELDLG 269 (328)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhhhhcCc--cccchhhHHHHHhccchHHHHHHHHHHHHHHhhheeccccccccC
Q ss_pred Cccch
Q 013398 427 SDKRF 431 (444)
Q Consensus 427 ~~~~~ 431 (444)
++..+
T Consensus 270 ~ken~ 274 (328)
T COG5536 270 PKENL 274 (328)
T ss_pred Ccccc
No 457
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=40.91 E-value=1.5e+02 Score=30.04 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Q 013398 4 HAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIV 40 (444)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~ 40 (444)
.++..+.+ -.+.|..+...|+|++|+..|+.+|...
T Consensus 199 ~~l~~L~~-~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i 234 (422)
T PF06957_consen 199 LSLSSLEE-RLKEGYKLFTAGKFEEAIEIFRSILHSI 234 (422)
T ss_dssp --HHHHHH-HHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 34555554 5688999999999999999999999764
No 458
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=40.90 E-value=3.9e+02 Score=26.89 Aligned_cols=171 Identities=15% Similarity=0.081 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChH--HHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCC---
Q 013398 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAE--TTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRN--- 136 (444)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~--~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~--- 136 (444)
.+.-+-++|.+++-.|+++-|...|+-+.+- ...|.. ..+..+...+..++..+.... .-+..+
T Consensus 207 ~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~D-f~~Dkaw~~~A~~~Em~alsl~~~~~~~~----------~k~~~~~~~ 275 (414)
T PF12739_consen 207 PEAQMRRLADLAFMLRDYELAYSTYRLLKKD-FKNDKAWKYLAGAQEMAALSLLMQGQSIS----------AKIRKDEIE 275 (414)
T ss_pred hHHHHHHHHHHHHHHccHHHHHHHHHHHHHH-HhhchhHHHHHhHHHHHHHHHHhcCCCCc----------cccccccHH
Confidence 4667788999999999999999999998764 000111 011112223333333221100 000111
Q ss_pred -cHHHHHHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC--C--CC---CHHHHHHHHHHH
Q 013398 137 -NIEEAILLLMILLRKVAL---KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--I--IN---RKERYHILALCY 205 (444)
Q Consensus 137 -~~~eAi~~l~~~~~~~~l---~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~--~--p~---~~~~~~~la~~l 205 (444)
-+|.|...+.. ... ...+.........+.++...|.+.+|...+-+.... . -. .+-.+-+.|.++
T Consensus 276 ~~le~A~~~Y~~----~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~ 351 (414)
T PF12739_consen 276 PYLENAYYTYLK----SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY 351 (414)
T ss_pred HHHHHHHHHHHh----hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh
Confidence 23444444321 110 011122334556677777888877776655554433 1 11 222333344444
Q ss_pred HHCCCchHHHHHHHHhhcCCC-CC--C-----ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 013398 206 YGAGEDLVALNLLRTLLSGSE-DP--K-----CLPALLIASKICGEYPDLAEEGATFASRALECLG 263 (444)
Q Consensus 206 ~~~g~~~~A~~~~~~al~~~~-~P--~-----~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~ 263 (444)
..+ .. .| . -...++.+++--+...|+...|+.+|.+++....
T Consensus 352 --------------~~~--~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 352 --------------ASL--RSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred --------------ccc--ccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 112 11 11 1 0123555666667788999999999999998754
No 459
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=40.75 E-value=71 Score=23.34 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=17.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 394 KAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
.|.-....|++++|+..|..+++....--
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34444455777777777777776665433
No 460
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=40.73 E-value=4e+02 Score=26.87 Aligned_cols=109 Identities=15% Similarity=-0.047 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cCCCC----hHHHHHHHHHHHHccC
Q 013398 297 RQAKALQALVSAAR---STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL--EGGSN----LKGWLLMARILSAQKR 367 (444)
Q Consensus 297 ~~~eA~~~~~~al~---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~----~~~~~~la~~l~~~g~ 367 (444)
.++.|...|.++-. ...+.-..+....+.++...|.+.+|...+-+.... +.+-. +-.+-..|.++
T Consensus 277 ~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~----- 351 (414)
T PF12739_consen 277 YLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY----- 351 (414)
T ss_pred HHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh-----
Confidence 46788888888420 122233345566666777788888877777666654 22210 12233333333
Q ss_pred HHHHHHHHHHHHhh-cCCCC-----cHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013398 368 YEDAETILNAALDQ-TGKWE-----QGELLR-TKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 368 ~~eA~~~~~~al~~-~P~~~-----~~~~~~-~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
..+.. .|..- -.-.|. .-|.-+.+.|+...|+.+|.+++.++.
T Consensus 352 ---------~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 352 ---------ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred ---------cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 11111 11001 123333 347788999999999999999999887
No 461
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=40.40 E-value=35 Score=36.69 Aligned_cols=87 Identities=15% Similarity=0.004 Sum_probs=49.4
Q ss_pred HhhHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCH
Q 013398 295 ATRQAKALQALVSAARSTNMRD----LSILYRLSLEYAE--QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY 368 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~----~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~ 368 (444)
.+.+.++.-.|..++ .+-|.+ .....+.+.+++. .|++..++....-++...|.. ..++.-.+..|...+++
T Consensus 66 K~d~~~~~~~~~~~~-~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i-~~~Ll~r~~~y~al~k~ 143 (748)
T KOG4151|consen 66 KRDYEGAMFRYDCAI-KLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRI-SKALLKRARKYEALNKL 143 (748)
T ss_pred hhhhhccchhhhhhh-eeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchH-HHHHhhhhhHHHHHHHH
Confidence 445555555555555 555522 2223344444443 346666666666666666666 36666666666666666
Q ss_pred HHHHHHHHHHHhhcC
Q 013398 369 EDAETILNAALDQTG 383 (444)
Q Consensus 369 ~eA~~~~~~al~~~P 383 (444)
+-|+.-+.-.....|
T Consensus 144 d~a~rdl~i~~~~~p 158 (748)
T KOG4151|consen 144 DLAVRDLRIVEKMDP 158 (748)
T ss_pred HHHHHHHHHHhcCCC
Confidence 666666555555556
No 462
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=39.77 E-value=74 Score=23.50 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=18.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 394 KAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
.|.-....|++++|+..|.++++.+....
T Consensus 12 ~Av~~D~~g~y~eA~~lY~~ale~~~~~~ 40 (75)
T cd02684 12 QAVKKDQRGDAAAALSLYCSALQYFVPAL 40 (75)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34444456777888888877777665543
No 463
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=39.60 E-value=3.6e+02 Score=26.94 Aligned_cols=22 Identities=36% Similarity=0.147 Sum_probs=18.8
Q ss_pred HHHHHHHCCCchHHHHHHHHhh
Q 013398 201 LALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 201 la~~l~~~g~~~~A~~~~~~al 222 (444)
++..+++.++|..|...|+.++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~ 157 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLL 157 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHH
Confidence 4557888999999999999998
No 464
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.55 E-value=3.2e+02 Score=25.52 Aligned_cols=81 Identities=11% Similarity=-0.029 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------HhhcCCCChHHHHHHHH-
Q 013398 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML----------------LKLEGGSNLKGWLLMAR- 360 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a----------------l~l~P~~~~~~~~~la~- 360 (444)
..+|++.- +.- ...-.||+.+..+|..+.+.|++.+|..+|-.. ..-.|.. ...+...+.
T Consensus 73 i~~ai~WS-~~~-~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e-~dlfi~RaVL 149 (260)
T PF04190_consen 73 IKAAIKWS-KFG-SYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE-ADLFIARAVL 149 (260)
T ss_dssp HHHHHHHH-HTS-S-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS---HHHHHHHHHH
T ss_pred HHHHHHHH-ccC-CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc-hhHHHHHHHH
Confidence 34566655 433 445578999999999999999999999887422 1222333 244444444
Q ss_pred HHHHccCHHHHHHHHHHHHhh
Q 013398 361 ILSAQKRYEDAETILNAALDQ 381 (444)
Q Consensus 361 ~l~~~g~~~eA~~~~~~al~~ 381 (444)
-|...|+...|...++.-++.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 366779999999877766655
No 465
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.15 E-value=3.6e+02 Score=25.87 Aligned_cols=205 Identities=13% Similarity=0.061 Sum_probs=102.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHH
Q 013398 167 LSFAFSIAGDLSSLATQIEELLPGI--------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (444)
Q Consensus 167 lg~~l~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~ 238 (444)
+++-....+++++|+..|.+.+... .+...+..+++.+|...|++..=-+.....- +++.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr---------e~m~--- 76 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR---------EAME--- 76 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH---------HHHH---
Confidence 4455666778888888888887652 1233466778888999888765322221111 1111
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH
Q 013398 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (444)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~ 318 (444)
.+ . ...-.+..+..++.+|..++....+....-..+-. + -.|-...++..+
T Consensus 77 ~f--t----k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iew--A------------~rEkr~fLr~~L--------- 127 (421)
T COG5159 77 DF--T----KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEW--A------------DREKRKFLRLEL--------- 127 (421)
T ss_pred Hh--c----chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--H------------HHHHHHHHHHHH---------
Confidence 00 0 01223444555555554333222111111000000 0 011112223333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh----c--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-----CCCCc
Q 013398 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKL----E--GGSNLKGWLLMARILSAQKRYEDAETILNAALDQT-----GKWEQ 387 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l----~--P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~-----P~~~~ 387 (444)
-..+..++++.|+|.+|+....-.+.- + |.- ...+..-..+|.+.++..++.+.+..|-... | ..
T Consensus 128 -e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L-i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pq 203 (421)
T COG5159 128 -ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL-ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQ 203 (421)
T ss_pred -HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce-eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HH
Confidence 345666777777777777776655431 1 222 2456666677777777777776666554332 3 12
Q ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013398 388 --GELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 388 --~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
+++-..-|.+...-.+|.-|..+|=++++
T Consensus 204 lqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 204 LQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 22222334444555566666666666554
No 466
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.22 E-value=1.7e+02 Score=23.08 Aligned_cols=47 Identities=19% Similarity=0.003 Sum_probs=35.4
Q ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013398 303 QALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 303 ~~~~~al~~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
+.++++- ..+ |--|-.+-.||.+|...|+.+.|...|+.--++.|++
T Consensus 58 ~~~ek~~-ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 58 KYLEKIG-AKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred HHHHHHh-hcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 3445544 333 4445678889999999999999999999888889986
No 467
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=37.47 E-value=82 Score=23.29 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=14.1
Q ss_pred HhCCHHHHHHHHHHHHHHHHhh
Q 013398 400 VQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 400 ~~g~~~~A~~~~~~al~l~~~~ 421 (444)
..|++++|+..|..+++.....
T Consensus 18 ~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 18 EEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777665543
No 468
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=37.36 E-value=55 Score=24.23 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=26.0
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHh
Q 013398 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVES 42 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~ 42 (444)
.+..+|....+.|+|++|...|...|+.+-.
T Consensus 8 ~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 8 ELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4556788889999999999999999987644
No 469
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=36.97 E-value=5.5e+02 Score=27.45 Aligned_cols=83 Identities=14% Similarity=0.010 Sum_probs=30.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH-----H
Q 013398 167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI-----C 241 (444)
Q Consensus 167 lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~-----~ 241 (444)
...++...|+|+.|++.+-+ .+.+.-=-.++|.++...|=..-.-..=...+ ..+|+++..+. .+++ -
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~ll--s~~~~~~~~ln-~arLI~~Y~~ 336 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLL--SVDPGDPPPLN-FARLIGQYTR 336 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCcccccee--eecCCCCCCcC-HHHHHHHHHH
Confidence 34578889999999999887 22222222334555555554433333226666 56666543211 1111 1
Q ss_pred hcCCCCHHHHHHHHH
Q 013398 242 GEYPDLAEEGATFAS 256 (444)
Q Consensus 242 ~~~~~~~~eA~~~~~ 256 (444)
.....+..+|+.||-
T Consensus 337 ~F~~td~~~Al~Y~~ 351 (613)
T PF04097_consen 337 SFEITDPREALQYLY 351 (613)
T ss_dssp TTTTT-HHHHHHHHH
T ss_pred HHhccCHHHHHHHHH
Confidence 123446667777764
No 470
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=36.49 E-value=39 Score=32.47 Aligned_cols=21 Identities=24% Similarity=0.131 Sum_probs=18.6
Q ss_pred HHhCChHHHHHHHHHHhCcCC
Q 013398 74 KLADAPRETIMSYRRALLPCW 94 (444)
Q Consensus 74 ~~~g~~~eA~~~y~~aL~~~~ 94 (444)
.+.|+.-+|+..|+.|+++++
T Consensus 30 Eq~G~l~dai~fYR~AlqI~~ 50 (366)
T KOG2997|consen 30 EQDGSLYDAINFYRDALQIVP 50 (366)
T ss_pred hhcCcHHHHHHHHHhhhcCCc
Confidence 478999999999999999943
No 471
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.03 E-value=2e+02 Score=28.81 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=29.4
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCC
Q 013398 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFP 49 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 49 (444)
+..++|+|+.++|++++|+..|++.|.....=.|-+.+
T Consensus 24 ~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k 61 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEK 61 (560)
T ss_pred HHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCccccc
Confidence 45679999999999999999999998765443333333
No 472
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=35.30 E-value=2.6e+02 Score=29.55 Aligned_cols=79 Identities=16% Similarity=0.100 Sum_probs=59.8
Q ss_pred HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013398 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~ 373 (444)
+....+.+....+.-+ .-....+...+.-+..+-..|..+.|-.+|++.++.+|+ .+++..+.-+...|-..+|..
T Consensus 20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 20 QEKKLAQAVALIDSEL-PTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND---EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHhhHHHHHHHHHHhC-CccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc---chHHHHHHHHHhhhhhhHHHH
Confidence 3345566676777666 555556667777788888889999999999999998887 456667777888888888887
Q ss_pred HHH
Q 013398 374 ILN 376 (444)
Q Consensus 374 ~~~ 376 (444)
.+.
T Consensus 96 ~~~ 98 (578)
T PRK15490 96 ILK 98 (578)
T ss_pred HHH
Confidence 777
No 473
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.18 E-value=2.1e+02 Score=28.74 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-------CCCCcH
Q 013398 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG--SNLKGWLLMARILSAQKRYEDAETILNAALDQT-------GKWEQG 388 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~-------P~~~~~ 388 (444)
.++..+|.-|..-|+++.|++.|.|+-.---. +....|+++-.+-...|+|..-..+..+|..-. +- -.+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~-v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQE-VPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHh-cCc
Confidence 45678888899999999999999996443322 212445555556666788887777777775431 00 122
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH
Q 013398 389 ELLRTKAKVQLVQGQLKGAVETYTH 413 (444)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~ 413 (444)
.+...-|.+...++++..|...+-.
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~ 254 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLL 254 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566667777788888776643
No 474
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.08 E-value=4.3e+02 Score=25.69 Aligned_cols=99 Identities=20% Similarity=0.175 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-------ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013398 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-------NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-------~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~ 390 (444)
.....||.+|.+.+++..|-..+.- +.++... ....+..+|.+|.+.++..+|..+..++--+-....|..+
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 3567888899999999988877643 2333211 0234567889999999999999888876522110023333
Q ss_pred H----HHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013398 391 L----RTKAKVQLVQGQLKGAVETYTHLLAA 417 (444)
Q Consensus 391 ~----~~la~~~~~~g~~~~A~~~~~~al~l 417 (444)
. .-.|.++...++|-||-..|-++..-
T Consensus 183 qie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23467778888998888888766543
No 475
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.03 E-value=7.7e+02 Score=28.54 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013398 196 ERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 196 ~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
-..+.+|.+|...|+..+|+.+|.+|.
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHh
Confidence 445667777778888888888887777
No 476
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=34.95 E-value=1.9e+02 Score=22.83 Aligned_cols=32 Identities=13% Similarity=-0.052 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013398 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 348 (444)
......-|.+-...||+..|.+...++-+..+
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~ 90 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSD 90 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 34445556666667777777777777755533
No 477
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=34.82 E-value=1e+02 Score=25.27 Aligned_cols=28 Identities=18% Similarity=-0.009 Sum_probs=15.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013398 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
.+|-.+...|++++|..+|-+|+..-|.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4555555556666666666666555555
No 478
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=34.75 E-value=7.1e+02 Score=28.10 Aligned_cols=69 Identities=12% Similarity=-0.014 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHcc
Q 013398 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-LKGWLLMARILSAQK 366 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-~~~~~~la~~l~~~g 366 (444)
.+.-.+.|.+.++-++-+|..+|..-..-...+|+|..|++.+.++++-+.+.+ -..|..++.++..+|
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 444455566655445666666665555555556666666666666666332211 134444444444444
No 479
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=34.42 E-value=7.8e+02 Score=28.44 Aligned_cols=19 Identities=11% Similarity=-0.080 Sum_probs=15.7
Q ss_pred HHHHHhCChHHHHHHHHHH
Q 013398 71 ELWKLADAPRETIMSYRRA 89 (444)
Q Consensus 71 ~~~~~~g~~~eA~~~y~~a 89 (444)
.-++..+++.+|..+.++=
T Consensus 685 r~~l~~~~y~~AF~~~Rkh 703 (1265)
T KOG1920|consen 685 RTLLDRLRYKEAFEVMRKH 703 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3467899999999999885
No 480
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=33.94 E-value=50 Score=27.33 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=23.9
Q ss_pred HHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHH
Q 013398 203 LCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (444)
Q Consensus 203 ~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~ 238 (444)
..++..-+.+.|.++|++.+ ...|++..+|+.+.
T Consensus 84 ~~~iaKle~e~Ae~vY~el~--~~~P~HLpaHla~i 117 (139)
T PF12583_consen 84 CSWIAKLEPENAEQVYEELL--EAHPDHLPAHLAMI 117 (139)
T ss_dssp HHHHTTS-HHHHHHHHHHHH--HH-TT-THHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHH--HHCcchHHHHHHHH
Confidence 33445557788999999999 89999999887543
No 481
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=33.70 E-value=2.4e+02 Score=22.68 Aligned_cols=84 Identities=18% Similarity=0.054 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013398 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401 (444)
Q Consensus 322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~ 401 (444)
-+|.+---....+||..++.= ++..++....+-+-....++.+|+|++| +.......- .+...|+.++ .-+.
T Consensus 11 ElAL~atG~HcH~EA~tIa~w-L~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~--pdL~p~~AL~--a~kl 82 (116)
T PF09477_consen 11 ELALMATGHHCHQEANTIADW-LEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLPQCHCY--PDLEPWAALC--AWKL 82 (116)
T ss_dssp HHHHHHHTTT-HHHHHHHHHH-HHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS----GGGHHHHHHH--HHHC
T ss_pred HHHHHHhhhHHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhcccCCC--ccHHHHHHHH--HHhh
Confidence 344444445678888877764 4445554223455567889999999999 333332221 2556666554 4577
Q ss_pred CCHHHHHHHHHH
Q 013398 402 GQLKGAVETYTH 413 (444)
Q Consensus 402 g~~~~A~~~~~~ 413 (444)
|--+++...+.+
T Consensus 83 GL~~~~e~~l~r 94 (116)
T PF09477_consen 83 GLASALESRLTR 94 (116)
T ss_dssp T-HHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 777777776664
No 482
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=33.27 E-value=7.5e+02 Score=27.92 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHh-hcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013398 333 LNAAHYYAKMLLK-LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (444)
Q Consensus 333 ~~~A~~~~~~al~-l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g 402 (444)
.+.-.+.|.+.+. ++-+++ .+|..-..-...+|+|-.|++++.++++.......-..+..++.++..+|
T Consensus 1212 ld~~~e~y~el~kw~d~~ds-K~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDS-KVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCc-hheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 3344455666655 455553 66665556667789999999999999984431023455666777777666
No 483
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.93 E-value=5.1e+02 Score=25.85 Aligned_cols=124 Identities=13% Similarity=-0.063 Sum_probs=63.6
Q ss_pred HhhHHHHHHHHHHHHHhhCCC-----CHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH-cc
Q 013398 295 ATRQAKALQALVSAARSTNMR-----DLSILYRL--SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA-QK 366 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~-----~~~a~~~l--g~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~-~g 366 (444)
..+|..|...|++++ ...+. ....+..+ |..+...-++++|.+.+++.+. +.. ...|...-.-... .+
T Consensus 143 ~~dy~aA~~~~~~L~-~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~--~~~-~~~~~~~~~~~~~l~~ 218 (380)
T TIGR02710 143 AFDYLFAHARLETLL-RRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLP--ERL-ALYQVTSHDELEDVIK 218 (380)
T ss_pred hcChHHHHHHHHHHH-hcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccc--hhh-hhhhhhhhhHHHHHHH
Confidence 467899999999999 77542 23344444 4555678899999999996221 221 2232221111000 01
Q ss_pred CHHHHHHHHHH--H--HhhcCCCCcHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 367 RYEDAETILNA--A--LDQTGKWEQGELLRTK--AKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 367 ~~~eA~~~~~~--a--l~~~P~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
.........+. + ....+++-...+.-.+ |.--..+|+|+.|+..+=+++++.-...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q~~ 280 (380)
T TIGR02710 219 RNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQIR 280 (380)
T ss_pred hHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 11111111110 0 1111200111222222 3333488999999999999988765443
No 484
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.94 E-value=78 Score=31.06 Aligned_cols=29 Identities=10% Similarity=-0.066 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013398 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 347 (444)
-+...|.-.+.++++++|...|..|..+.
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~ 71 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELS 71 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHH
Confidence 35566666777777777777777776654
No 485
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=31.83 E-value=1.8e+02 Score=29.07 Aligned_cols=68 Identities=19% Similarity=0.090 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHH
Q 013398 248 AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILY 321 (444)
Q Consensus 248 ~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~ 321 (444)
...|+.++++|.....|..=...+.++..||..+..... ++..-|.+|.+.+++|-+..+....+++-
T Consensus 334 ~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~------eQe~~Y~eAE~iL~kAN~at~GKy~diLd 401 (404)
T PF12753_consen 334 IKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESK------EQEKAYKEAEKILKKANKATNGKYQDILD 401 (404)
T ss_dssp HHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-------HHHHHHHHHHHHHHHHHTT----HHHHH
T ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchH------HHHHHHHHHHHHHHHHhhccccchHHHHh
Confidence 346777777777643332212234455555555543322 24556888999888887433333333333
No 486
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.67 E-value=5.9e+02 Score=28.45 Aligned_cols=25 Identities=4% Similarity=0.278 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCC
Q 013398 166 HLSFAFSIAGDLSSLATQIEELLPG 190 (444)
Q Consensus 166 ~lg~~l~~~g~~~~A~~~~~~al~~ 190 (444)
+.|.-+...|.+.+|+++|+.+|-.
T Consensus 996 ~~gy~ltt~gKf~eAie~Frsii~~ 1020 (1202)
T KOG0292|consen 996 QKGYKLTTEGKFGEAIEKFRSIIYS 1020 (1202)
T ss_pred HHHHhhhccCcHHHHHHHHHHHHhh
Confidence 4455666789999999999988744
No 487
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=30.67 E-value=1.4e+02 Score=29.39 Aligned_cols=46 Identities=15% Similarity=-0.015 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013398 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML 343 (444)
Q Consensus 297 ~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 343 (444)
..-+|+..++.++ ..+|.|+.....|-.+|...|-.+.|...|...
T Consensus 198 ~l~~Ai~lLE~~l-~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHAL-KKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 4578999999999 999999999999999999999999999999654
No 488
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=30.32 E-value=3.2e+02 Score=25.99 Aligned_cols=63 Identities=19% Similarity=0.146 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHH
Q 013398 64 RAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAIL 143 (444)
Q Consensus 64 ~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~ 143 (444)
+.+++-..+|.+.|.+....+.=+.=|+.|.|-+-.. ....+++++. .++.|.|.++||.+
T Consensus 119 kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~----y~~vaELyLl---------------~VLlPLG~~~eAee 179 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPE----YGTVAELYLL---------------HVLLPLGHFSEAEE 179 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchh----hHHHHHHHHH---------------HHHhccccHHHHHH
Confidence 4566666678888888888887777777643322111 2334555443 46788999999987
Q ss_pred HH
Q 013398 144 LL 145 (444)
Q Consensus 144 ~l 145 (444)
+.
T Consensus 180 lv 181 (309)
T PF07163_consen 180 LV 181 (309)
T ss_pred HH
Confidence 64
No 489
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=29.66 E-value=69 Score=29.43 Aligned_cols=24 Identities=13% Similarity=-0.087 Sum_probs=17.5
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHH
Q 013398 295 ATRQAKALQALVSAARSTNMRDLSI 319 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a 319 (444)
-|+++.|++..+-|+ +.+=.-|+-
T Consensus 96 ~Gd~~~AL~ia~yAI-~~~l~~Pd~ 119 (230)
T PHA02537 96 IGDFDGALEIAEYAL-EHGLTMPDQ 119 (230)
T ss_pred ccCHHHHHHHHHHHH-HcCCCCCcc
Confidence 367888888888888 777544443
No 490
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.52 E-value=67 Score=34.58 Aligned_cols=72 Identities=18% Similarity=0.166 Sum_probs=56.5
Q ss_pred HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 013398 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ---------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~---------g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~ 364 (444)
+.|+.++|+...-.++..-.|-.|+.++.-|.+|-.+ +..+.|++.|++|.+..|.- ..=.+++.++..
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~--~sGIN~atLL~a 332 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE--YSGINLATLLRA 332 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh--hccccHHHHHHH
Confidence 4688999999999998334577788999999998643 66778999999999999985 444567777777
Q ss_pred ccC
Q 013398 365 QKR 367 (444)
Q Consensus 365 ~g~ 367 (444)
.|.
T Consensus 333 aG~ 335 (1226)
T KOG4279|consen 333 AGE 335 (1226)
T ss_pred hhh
Confidence 665
No 491
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=28.90 E-value=1.6e+02 Score=19.21 Aligned_cols=29 Identities=10% Similarity=-0.010 Sum_probs=13.8
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHccCHH
Q 013398 340 AKMLLKLEGGSNLKGWLLMARILSAQKRYE 369 (444)
Q Consensus 340 ~~~al~l~P~~~~~~~~~la~~l~~~g~~~ 369 (444)
|.+|+--+|++. ..+.-.+.-+..+|+..
T Consensus 5 ll~AI~~~P~dd-t~RLvYADWL~e~gdp~ 33 (42)
T TIGR02996 5 LLRAILAHPDDD-TPRLVYADWLDEHGDPA 33 (42)
T ss_pred HHHHHHhCCCCc-chHHHHHHHHHHcCCHH
Confidence 334444455543 44555555555555443
No 492
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=28.73 E-value=2.1e+02 Score=22.57 Aligned_cols=44 Identities=20% Similarity=0.129 Sum_probs=25.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013398 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (444)
Q Consensus 357 ~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g 402 (444)
..|.+-...||++.|.+...++-+..+ .....+..-+..-..+|
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~~~--~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKLSD--NPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcC
Confidence 345555556777777777777765544 33344444455555554
No 493
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.25 E-value=1.6e+02 Score=26.20 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=27.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 013398 167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALC 204 (444)
Q Consensus 167 lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 204 (444)
...++.+.|.+++|.+.+++... +|++......|..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 34567788999999999999988 77776654444443
No 494
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=27.92 E-value=91 Score=19.30 Aligned_cols=29 Identities=3% Similarity=0.013 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHcCCH---HHHHHHHHHHHhh
Q 013398 318 SILYRLSLEYAEQRKL---NAAHYYAKMLLKL 346 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~---~~A~~~~~~al~l 346 (444)
++.+++|+++.+.+.. .+++..++..+.-
T Consensus 2 qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~ 33 (35)
T PF14852_consen 2 QTQFNYAWGLVKSNNREDQQEGIALLEELYRD 33 (35)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCC
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 4567777777766543 4466666555443
No 495
>PF13934 ELYS: Nuclear pore complex assembly
Probab=27.47 E-value=4.8e+02 Score=23.80 Aligned_cols=100 Identities=13% Similarity=-0.043 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013398 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD 380 (444)
Q Consensus 301 A~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~ 380 (444)
+...|-++. .+.|+. ...-.|.-+...+++++|+..+-.. .+.|++ ...+..++..+|+.+.|+.+++..
T Consensus 65 ~~~~Fa~~f-~ip~~~--~~~~~g~W~LD~~~~~~A~~~L~~p-s~~~~~----~~~Il~~L~~~~~~~lAL~y~~~~-- 134 (226)
T PF13934_consen 65 LAESFARAF-GIPPKY--IKFIQGFWLLDHGDFEEALELLSHP-SLIPWF----PDKILQALLRRGDPKLALRYLRAV-- 134 (226)
T ss_pred HHHHHHHHh-CCCHHH--HHHHHHHHHhChHhHHHHHHHhCCC-CCCccc----HHHHHHHHHHCCChhHHHHHHHhc--
Confidence 344444444 343321 2334455555556666666665332 222222 112334444466666666666542
Q ss_pred hcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013398 381 QTGKWEQGELLRTKAKVQLVQGQLKGAVETYT 412 (444)
Q Consensus 381 ~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 412 (444)
.|...+.+.....-.+ ...|...||+..-|
T Consensus 135 -~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 135 -GPPLSSPEALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred -CCCCCCHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 2211333333332222 44456666655433
No 496
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=27.46 E-value=20 Score=37.50 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhc--CCCCCC-HHHHHHHHHHHHHCCCchHHHHHHHH
Q 013398 163 ILDHLSFAFSIAGDLSSLATQIEELL--PGIINR-KERYHILALCYYGAGEDLVALNLLRT 220 (444)
Q Consensus 163 ~~~~lg~~l~~~g~~~~A~~~~~~al--~~~p~~-~~~~~~la~~l~~~g~~~~A~~~~~~ 220 (444)
....-+.++...|+++.|...+.+.- .++|.. .+.....|.+....|++++|+..+..
T Consensus 26 ~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~ 86 (536)
T PF04348_consen 26 LLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNA 86 (536)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 33344566667777777777666555 233322 23333346666666777777766653
No 497
>PF13934 ELYS: Nuclear pore complex assembly
Probab=27.42 E-value=3.5e+02 Score=24.74 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=48.2
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCc
Q 013398 133 VPRNNIEEAILLLMILLRKVALKRIEW-DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGED 211 (444)
Q Consensus 133 ~~~~~~~eAi~~l~~~~~~~~l~~~p~-~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~ 211 (444)
...+++++|+.++ . .|. .++....+-.++...|+++.|..+++. .+-...++++...+..+ ...|..
T Consensus 89 LD~~~~~~A~~~L---------~-~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~-~~p~l~s~~~~~~~~~~-La~~~v 156 (226)
T PF13934_consen 89 LDHGDFEEALELL---------S-HPSLIPWFPDKILQALLRRGDPKLALRYLRA-VGPPLSSPEALTLYFVA-LANGLV 156 (226)
T ss_pred hChHhHHHHHHHh---------C-CCCCCcccHHHHHHHHHHCCChhHHHHHHHh-cCCCCCCHHHHHHHHHH-HHcCCH
Confidence 3456788888765 1 121 133334566667778888888876654 45555666655554444 666778
Q ss_pred hHHHHHHHHhh
Q 013398 212 LVALNLLRTLL 222 (444)
Q Consensus 212 ~~A~~~~~~al 222 (444)
.||...-+..-
T Consensus 157 ~EAf~~~R~~~ 167 (226)
T PF13934_consen 157 TEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHHhCc
Confidence 88877766655
No 498
>PRK09687 putative lyase; Provisional
Probab=27.27 E-value=5.4e+02 Score=24.34 Aligned_cols=226 Identities=12% Similarity=0.030 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC----chHHHHHHHHhhcCCCCCCCh---
Q 013398 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE----DLVALNLLRTLLSGSEDPKCL--- 231 (444)
Q Consensus 159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~----~~~A~~~~~~al~~~~~P~~~--- 231 (444)
.+..++.....++...| .+.+...+.++ ....++.....-+.++-..|+ .+++...+...+ .-+|+..
T Consensus 35 ~d~~vR~~A~~aL~~~~-~~~~~~~l~~l--l~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~--~~D~d~~VR~ 109 (280)
T PRK09687 35 HNSLKRISSIRVLQLRG-GQDVFRLAIEL--CSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA--LEDKSACVRA 109 (280)
T ss_pred CCHHHHHHHHHHHHhcC-cchHHHHHHHH--HhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH--hcCCCHHHHH
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh
Q 013398 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (444)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~ 311 (444)
.+...+|.++-.......+++..+..++. +.+......+-..||.+ .-.+|+..+..++ .
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~----------------~~~~ai~~L~~~L-~ 169 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVI----------------NDEAAIPLLINLL-K 169 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhcc----------------CCHHHHHHHHHHh-c
Q ss_pred hCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013398 312 TNMRDLSILYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (444)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~ 390 (444)
..|+.+...-...+...+ +..++...+.+++ -+++. .....-...+...|. ..|+..+-+.++. + + .
T Consensus 170 --d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L-~D~~~--~VR~~A~~aLg~~~~-~~av~~Li~~L~~-~--~---~ 237 (280)
T PRK09687 170 --DPNGDVRNWAAFALNSNKYDNPDIREAFVAML-QDKNE--EIRIEAIIGLALRKD-KRVLSVLIKELKK-G--T---V 237 (280)
T ss_pred --CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-cCCCh--HHHHHHHHHHHccCC-hhHHHHHHHHHcC-C--c---h
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013398 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
.......+-..|.. +|+..+.++++-.++..
T Consensus 238 ~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~ 268 (280)
T PRK09687 238 GDLIIEAAGELGDK-TLLPVLDTLLYKFDDNE 268 (280)
T ss_pred HHHHHHHHHhcCCH-hHHHHHHHHHhhCCChh
No 499
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=26.96 E-value=5.7e+02 Score=24.55 Aligned_cols=167 Identities=18% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013398 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (444)
Q Consensus 158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~ 237 (444)
|-..+....+-..+ ..+++.+.++..++.+..+|-=.+.++..+.++.++| ++++....+..+
T Consensus 97 ~p~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el--------------- 159 (301)
T TIGR03362 97 PPPADRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDEL--------------- 159 (301)
T ss_pred CCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHH---------------
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC---
Q 013398 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM--- 314 (444)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P--- 314 (444)
...|+.+|.- ....|.=|.-+.. ++....+.... ...+
T Consensus 160 ------------------~~fL~RlP~L-----~~L~F~DGtPFad---------------~~T~~WL~~~~-~~~~~~~ 200 (301)
T TIGR03362 160 ------------------AAFLERLPGL-----LELKFSDGTPFAD---------------DETRAWLAQHA-TRSNAAS 200 (301)
T ss_pred ------------------HHHHHhCcCh-----hhcccCCCCCCCC---------------HHHHHHHHhcc-ccccccc
Q ss_pred ----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013398 315 ----------RDLSILYRLSLEYAEQRKLNAAHYYAKMLLK--LEGGSNLKGWLLMARILSAQKRYEDAETILNAALD 380 (444)
Q Consensus 315 ----------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~ 380 (444)
++......-+..+...|.+++|+..++..+. -.|.+.....+.++.++...|+++-|...|+...+
T Consensus 201 ~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 201 VAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred ccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 500
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=26.78 E-value=2.5e+02 Score=29.37 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhc-----CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013398 333 LNAAHYYAKMLLKLE-----GGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 333 ~~~A~~~~~~al~l~-----P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~ 382 (444)
-..++..|.+|+... ..+ +--|..+|..+.+.++|.+|+..+-.|-..-
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n~H-vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi 348 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNNHH-VYPYTYLGGYYYRHKRYREALRSWAEAADVI 348 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCc-cccceehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777776543 223 4567788888999999999999888776543
Done!