BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013399
(444 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1
Length = 809
Score = 278 bits (710), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 147/378 (38%), Positives = 224/378 (59%), Gaps = 8/378 (2%)
Query: 69 PLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRR 128
P++ + +D + S L + + L S EE KR ++ KL +IV W K+V+ ++
Sbjct: 58 PISTAPPSSIDFKLSTELENTLISFNLFESPEESRKREEILGKLNQIVREWAKQVSLKKG 117
Query: 129 LPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEV 188
P++ +E A I T+GSY LGVHG SDID LC+GP+ M DFF L ++LK PE+
Sbjct: 118 YPEQTASEVVAKIFTFGSYRLGVHGPGSDIDTLCVGPKHI-MRSDFFDDLSDILKVHPEI 176
Query: 189 SEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENV-DVLNPFFLRDLDETSWKSLS 247
+E VKDA VP++ F GI IDL YA L + ++PE + D+++ FL+++DE S SL+
Sbjct: 177 TEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNIDEKSILSLN 236
Query: 248 GVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPK 307
G R IL+LVP++ F+ LRCIKLWA RRG+Y N+ GFLGGV A+L A +CQ +P
Sbjct: 237 GCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTARICQLYPN 296
Query: 308 GSLNTLVANFFKTYAYWPWPTPVML---QDPML--PAAGYPSETRS-LMPIRLPCSPHEY 361
+ +T++ FFK Y W WP P++L Q+ + P P ++ LMPI P P
Sbjct: 297 SAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPKRDKAHLMPIITPAYPSMN 356
Query: 362 CHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQ 421
N+++ST +++EF+RG TR + + W L E + +Y+ ++ + + N+
Sbjct: 357 STYNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCDFFTRYSFYIEIDCYSMNE 416
Query: 422 DDLGDWVGWVKSRFRSLI 439
+D W GW++S+ R LI
Sbjct: 417 EDSRKWEGWIESKLRFLI 434
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 254 bits (650), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 142/384 (36%), Positives = 215/384 (55%), Gaps = 9/384 (2%)
Query: 69 PLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRR 128
P++ + ++D + L+ M G+ EE + R V+ KL +V W+ V+ +
Sbjct: 24 PISLASPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVVLGKLNNLVKEWISDVSESKN 83
Query: 129 LPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEV 188
LP +A I T+GSY LGVH +DIDALC+ P + DFF LK + +
Sbjct: 84 LPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERS-DFFQSFFEKLKHQDGI 142
Query: 189 SEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSG 248
+ V+DA VP+++F+FDGI IDL +A L + ++ +N+D+ + LR LD +SL+G
Sbjct: 143 RNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIRSLNG 202
Query: 249 VRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKG 308
R IL LVP+ E F+ LR +KLWAKRRG+Y N+ GFLGGV A+LVA CQ +P
Sbjct: 203 CRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQLYPNA 262
Query: 309 SLNTLVANFFKTYAYWPWPTPVMLQDPM-----LPA---AGYPSETRSLMPIRLPCSPHE 360
+ +TLV FF ++ W WP PV+L+ P LP PS+ LMPI P P +
Sbjct: 263 AASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 322
Query: 361 YCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASN 420
N++ ST + EF +G T ++++ DW L EP + +KY ++ + SAS
Sbjct: 323 NSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASAST 382
Query: 421 QDDLGDWVGWVKSRFRSLILKVSR 444
+++ +WVG V+S+ R L+ + R
Sbjct: 383 EENHLEWVGLVESKIRVLVGNLER 406
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 254 bits (650), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 141/384 (36%), Positives = 215/384 (55%), Gaps = 9/384 (2%)
Query: 69 PLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRR 128
P++ + ++D + L+ M G+ EE + R V+ KL +V W+ ++ +
Sbjct: 24 PISLACPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVVLGKLNNLVKEWISDISESKN 83
Query: 129 LPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEV 188
LP +A I T+GSY LGVH +DIDALC+ P + DFF LK + +
Sbjct: 84 LPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERS-DFFQSFFEKLKHQDGI 142
Query: 189 SEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSG 248
+ V+DA VP+++F+FDGI IDL +A L + ++ +N+D+ + LR LD +SL+G
Sbjct: 143 RNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIRSLNG 202
Query: 249 VRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKG 308
R IL LVP+ E F+ LR +KLWAKRRG+Y N+ GFLGGV A+LVA CQ +P
Sbjct: 203 CRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQLYPNA 262
Query: 309 SLNTLVANFFKTYAYWPWPTPVMLQDPM-----LPA---AGYPSETRSLMPIRLPCSPHE 360
+ +TLV FF ++ W WP PV+L+ P LP PS+ LMPI P P +
Sbjct: 263 AASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 322
Query: 361 YCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASN 420
N++ ST + EF +G T ++++ DW L EP + +KY ++ + SAS
Sbjct: 323 NSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASAST 382
Query: 421 QDDLGDWVGWVKSRFRSLILKVSR 444
+++ +WVG V+S+ R L+ + R
Sbjct: 383 EENHLEWVGLVESKIRVLVGNLER 406
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2
Length = 641
Score = 239 bits (610), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 212/379 (55%), Gaps = 9/379 (2%)
Query: 69 PLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRR 128
P++ + D E + L++ + G+ EE +R ++QKL +V W++ ++ R
Sbjct: 25 PISLAAPKDTDRELTQKLIETLQPFGVFEEEEELQRRILILQKLNNLVKEWIREISESRN 84
Query: 129 LPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEV 188
LP+ I I T+GSY LGVH +DIDALC+ P DFF ++ LK + EV
Sbjct: 85 LPQAVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDR-NDFFTSFYDKLKLQEEV 143
Query: 189 SEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSG 248
++ V++A VP+++ FDGI ID+ +A L + ++PE++D+ + L++LD +SL+G
Sbjct: 144 KDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNG 203
Query: 249 VRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKG 308
R IL LVP+++ F+ LR IKLWAK +Y N+ GFLGGV A+LVA CQ +P
Sbjct: 204 CRVTDEILHLVPNIDSFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYPNA 263
Query: 309 SLNTLVANFFKTYAYWPWPTPVMLQDPM-----LPA---AGYPSETRSLMPIRLPCSPHE 360
+TLV FF ++ W WP PV+L++P LP PS+ LMPI P P +
Sbjct: 264 IASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 323
Query: 361 YCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASN 420
N++ ST + EF +G T +++ +W LFE + +KY ++ + SA
Sbjct: 324 NSTYNVSVSTRMVMIEEFKQGLAITHEILLNKAEWSKLFEAPSFFQKYKHYIVLLASAPT 383
Query: 421 QDDLGDWVGWVKSRFRSLI 439
+ +WVG V+S+ R L+
Sbjct: 384 EKQHLEWVGLVESKIRILV 402
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1
Length = 636
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 214/379 (56%), Gaps = 9/379 (2%)
Query: 69 PLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRR 128
P++ +V + D + L++ + G+ EE +R V++KL +V W++ ++ +
Sbjct: 25 PISLAVPKETDCLLTQRLIETLRPFGVFEEEEELQRRILVLEKLNNLVKEWIREISESKS 84
Query: 129 LPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEV 188
LP+ I I T+GSY LGVH +DIDALC+ P + DFF + LK + EV
Sbjct: 85 LPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPSHVDRS-DFFTSFYAKLKLQEEV 143
Query: 189 SEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSG 248
++ V++A VP+++ FDGI ID+ +A L + ++PE++D+ + L++LD +SL+G
Sbjct: 144 KDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNG 203
Query: 249 VRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKG 308
R IL LVP+++ F+ LR IKLWAK +Y N+ GFLGGV A+LVA CQ +P
Sbjct: 204 CRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYPNA 263
Query: 309 SLNTLVANFFKTYAYWPWPTPVMLQDPM-----LPA---AGYPSETRSLMPIRLPCSPHE 360
+TLV FF ++ W WP PV+L++P LP PS+ LMPI P P +
Sbjct: 264 VASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 323
Query: 361 YCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASN 420
N++ ST + EF +G T +++ +W LFE + +KY ++ + SAS
Sbjct: 324 NSTYNVSISTRMVMIEEFKQGLAITHEILLSKAEWSKLFEAPSFFQKYKHYIVLLASAST 383
Query: 421 QDDLGDWVGWVKSRFRSLI 439
+ +WVG V+S+ R L+
Sbjct: 384 EKQHLEWVGLVESKIRILV 402
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 235 bits (600), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 132/362 (36%), Positives = 205/362 (56%), Gaps = 9/362 (2%)
Query: 86 LVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYG 145
LV+ + G+ EE +R ++ KL +V W++ ++ + LP+ I I T+G
Sbjct: 42 LVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFG 101
Query: 146 SYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFK 205
SY LGVH +DIDALC+ P + DFF ++ LK + EV ++ V++A VP+++
Sbjct: 102 SYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLC 160
Query: 206 FDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKF 265
FDGI ID+ +A L + ++PE++D+ + L++LD +SL+G R IL LVP+++ F
Sbjct: 161 FDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNF 220
Query: 266 QPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYWP 325
+ LR IKLWAKR +Y N+ GFLGGV A+LVA CQ +P +TLV FF ++ W
Sbjct: 221 RLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWE 280
Query: 326 WPTPVMLQDPM-----LPA---AGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTE 377
WP PV+L+ P LP PS+ LMPI P P + N++ ST + E
Sbjct: 281 WPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEE 340
Query: 378 FLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRS 437
F +G T +++ +W LFE + +KY ++ + SA + +WVG V+S+ R
Sbjct: 341 FKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRI 400
Query: 438 LI 439
L+
Sbjct: 401 LV 402
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 235 bits (600), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 201/371 (54%), Gaps = 18/371 (4%)
Query: 85 SLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTY 144
+L+Q + N G S + KR V+ + +V +V V+ + + + + T+
Sbjct: 27 ALIQELKNRGSFESEQATKKRVEVLTLFQRLVQEFVYTVSKSKNMSDSMAQDAGGKVFTF 86
Query: 145 GSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRF 204
GSY LGV+G SDID L + P+ T +DFF V ++++ RPE+ EI CV DA VP+++
Sbjct: 87 GSYRLGVYGPGSDIDTLVVVPKHVTR-DDFFSVFADIIRKRPELEEIACVPDAYVPIIKL 145
Query: 205 KFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEK 264
+FDGI IDL A L++ VP ++ + + L++LDE +SL+G R ILQLVP
Sbjct: 146 EFDGISIDLIMARLNIPRVPLDLTLDDKNLLKNLDEKDLRSLNGTRVTDEILQLVPKPTV 205
Query: 265 FQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYW 324
F+ LRCIKLWA++R VYGN+ GF GGV A+LVA +CQ +P + +V FF Y W
Sbjct: 206 FKHALRCIKLWAQQRAVYGNIFGFPGGVAWAMLVARICQLYPNAVSSAIVEKFFNIYTKW 265
Query: 325 PWPTPVMLQ------------DPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFY 372
WP PV+L+ +P L YP + MP+ P P NIT ST
Sbjct: 266 NWPEPVLLKSIEDGPLQVRVWNPRL----YPHDRLHRMPVITPAYPSMCATHNITSSTQK 321
Query: 373 KIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFV-RVYLSASNQDDLGDWVGWV 431
I E RG + +++ W LFE + KY ++ V S + ++ W G++
Sbjct: 322 VILAELSRGSSIMQEIHAGKKTWSDLFEKHSFFYKYKFYLCVVAASIDSAEEHKKWSGFI 381
Query: 432 KSRFRSLILKV 442
+S+ R L+LK+
Sbjct: 382 ESKLRQLVLKL 392
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4
Length = 745
Score = 235 bits (599), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 131/362 (36%), Positives = 205/362 (56%), Gaps = 9/362 (2%)
Query: 86 LVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYG 145
L++ + G+ EE +R ++ KL +V W++ ++ + LP+ I I T+G
Sbjct: 42 LIETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFG 101
Query: 146 SYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFK 205
SY LGVH +DIDALC+ P + DFF ++ LK + EV ++ V++A VP+++
Sbjct: 102 SYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLC 160
Query: 206 FDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKF 265
FDGI ID+ +A L + ++PE++D+ + L++LD +SL+G R IL LVP+++ F
Sbjct: 161 FDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNF 220
Query: 266 QPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYWP 325
+ LR IKLWAKR +Y N+ GFLGGV A+LVA CQ +P +TLV FF ++ W
Sbjct: 221 RLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWE 280
Query: 326 WPTPVMLQDPM-----LPA---AGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTE 377
WP PV+L+ P LP PS+ LMPI P P + N++ ST + E
Sbjct: 281 WPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEE 340
Query: 378 FLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRS 437
F +G T +++ +W LFE + +KY ++ + SA + +WVG V+S+ R
Sbjct: 341 FKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRI 400
Query: 438 LI 439
L+
Sbjct: 401 LV 402
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4
Length = 739
Score = 234 bits (598), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 131/362 (36%), Positives = 205/362 (56%), Gaps = 9/362 (2%)
Query: 86 LVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYG 145
L++ + G+ EE +R ++ KL +V W++ ++ + LP+ I I T+G
Sbjct: 42 LIETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFG 101
Query: 146 SYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFK 205
SY LGVH +DIDALC+ P + DFF ++ LK + EV ++ V++A VP+++
Sbjct: 102 SYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLC 160
Query: 206 FDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKF 265
FDGI ID+ +A L + ++PE++D+ + L++LD +SL+G R IL LVP+++ F
Sbjct: 161 FDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNF 220
Query: 266 QPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYWP 325
+ LR IKLWAKR +Y N+ GFLGGV A+LVA CQ +P +TLV FF ++ W
Sbjct: 221 RLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWE 280
Query: 326 WPTPVMLQDPM-----LPA---AGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTE 377
WP PV+L+ P LP PS+ LMPI P P + N++ ST + E
Sbjct: 281 WPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEE 340
Query: 378 FLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRS 437
F +G T +++ +W LFE + +KY ++ + SA + +WVG V+S+ R
Sbjct: 341 FKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRI 400
Query: 438 LI 439
L+
Sbjct: 401 LV 402
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/387 (33%), Positives = 207/387 (53%), Gaps = 17/387 (4%)
Query: 69 PLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRR 128
P++ + + + + +L+ + N+ L S E +KR V+ +L++I +VK+V+ +
Sbjct: 11 PISTAPATEQENALNTALINELKNQNLFESPAESEKRVKVLDELQQITTEFVKKVSLAKH 70
Query: 129 LPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEV 188
+ ++ E I TYGSY LGV+G SDID L + P+ + ++FF L ML+ R EV
Sbjct: 71 MNEKMANEAGGKIFTYGSYRLGVYGPGSDIDTLVVVPKHVSR-DNFFQDLEPMLREREEV 129
Query: 189 SEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSG 248
+++ V DA VP+++FKF GI IDL +A L V VP ++++ + L+ ++E SL+G
Sbjct: 130 TDLAAVPDAYVPIIKFKFLGISIDLIFARLSVPRVPRDLELSDNNLLKGVEERCVLSLNG 189
Query: 249 VRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKG 308
R ILQLVP+ F+ LR IK WA+RR +Y N+ GF GGV A++VA +CQ +P
Sbjct: 190 TRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAWAMMVARICQLYPNA 249
Query: 309 SLNTLVANFFKTYAYWPWPTPVMLQ------------DPMLPAAGYPSETRSLMPIRLPC 356
+ +VA FF+ W WP P++L+ +P L YPS+ MPI P
Sbjct: 250 VSSVIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKL----YPSDKAHRMPIITPA 305
Query: 357 SPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYL 416
P NIT ST I E +R +M W LF+ + +Y ++ +
Sbjct: 306 YPSMCATHNITLSTQTIILREMVRAGEIADQIMVKALPWSALFQKHDFFHRYKHYLTITA 365
Query: 417 SASNQDDLGDWVGWVKSRFRSLILKVS 443
+A + W G V+S+ R L+ ++
Sbjct: 366 AAKTAEAQLKWAGLVESKLRHLVTRLE 392
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a
PE=2 SV=1
Length = 715
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 198/348 (56%), Gaps = 9/348 (2%)
Query: 100 EEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDID 159
EEE + ++ KL +V W++ ++ + LP+ I I T+G Y LGVH +DID
Sbjct: 38 EEEQLQHRILGKLNNLVKEWIREISELKHLPQSVIENVGGKIFTFGPYRLGVHTKGADID 97
Query: 160 ALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLH 219
ALC+ P + DFF ++ LK + EV ++ V++A VP+++ FDGI ID+ +A L
Sbjct: 98 ALCVAPRHVDRS-DFFSSFYDKLKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFARLA 156
Query: 220 VLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRR 279
+ ++PE++D+ + L++LD +SL+G R IL LVP+++ F+ LR IKLWAKR
Sbjct: 157 LQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKRH 216
Query: 280 GVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPM--- 336
+Y N+ GFLGGV A+LVA CQ +P +TLV FF ++ W WP PV+L+ P
Sbjct: 217 NIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECN 276
Query: 337 --LPA---AGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRP 391
LP PS+ LMPI P P + N++ ST + EF +G T +++
Sbjct: 277 LNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRAVMIEEFKQGLAITDEILLG 336
Query: 392 DFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLI 439
+W LF+ + +KY ++ + SA + +WVG V+S+ R L+
Sbjct: 337 KAEWSKLFDAPNFFQKYKHYILLLASAPTEKQRLEWVGLVESKIRILV 384
>sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAP1 PE=1 SV=1
Length = 568
Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 136/373 (36%), Positives = 195/373 (52%), Gaps = 20/373 (5%)
Query: 85 SLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTY 144
SL+Q + EG + +E R V++ L+E+ +V V+ ++ + + I TY
Sbjct: 28 SLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTY 87
Query: 145 GSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRF 204
GSY LGVHG SDID L + P+ T EDFF V ++L+ R E+ EI V DA VP+++
Sbjct: 88 GSYRLGVHGPGSDIDTLVVVPKHVTR-EDFFTVFDSLLRERKELDEIAPVPDAFVPIIKI 146
Query: 205 KFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEK 264
KF GI IDL A L VP ++ + + LR+LDE ++L+G R IL+LVP
Sbjct: 147 KFSGISIDLICARLDQPQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNV 206
Query: 265 FQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYW 324
F+ LR IKLWA+RR VY N+ GF GGV A+LVA +CQ +P ++ FF + W
Sbjct: 207 FRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAVILNRFFIILSEW 266
Query: 325 PWPTPVMLQ------------DPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFY 372
WP PV+L+ +P + Y + MP+ P P NIT ST
Sbjct: 267 NWPQPVILKPIEDGPLQVRVWNPKI----YAQDRSHRMPVITPAYPSMCATHNITESTKK 322
Query: 373 KIRTEFLRGHNTTRDLMRPDFDWHFLFEP--FPYSKKYARFVRVYLSASNQDDLGDWVGW 430
I EF+RG T D+ W LFE F + K+ + Y S++ L W G
Sbjct: 323 VILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHL-KWSGL 381
Query: 431 VKSRFRSLILKVS 443
V+S+ R L++K+
Sbjct: 382 VESKVRLLVMKLE 394
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 208 bits (529), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 198/378 (52%), Gaps = 18/378 (4%)
Query: 79 DEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETH 138
+ E + SL++ + + G S KR V+ L+ + +V +V+ ++ + + +
Sbjct: 21 ENELNDSLIKELKSRGSFESETATKKRVEVLNILQSMTEEFVYKVSIKKNISEGMARDVG 80
Query: 139 ATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAK 198
I T+GSY LGV+G SDID L + P+ + DFF V + +LK R E+ EI V DA
Sbjct: 81 GKIFTFGSYRLGVYGPGSDIDTLVVVPKHVSR-NDFFEVFYELLKGRSELEEIAPVPDAF 139
Query: 199 VPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQL 258
VP+++ +F GI IDL +A L + VP ++ + + L+++DE ++L+G R ILQL
Sbjct: 140 VPIIKIEFAGISIDLIFARLDIPRVPRDLTLDDKNLLKNIDEKDLRALNGTRVTDEILQL 199
Query: 259 VPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFF 318
VP F+ LRCIK+WA++R VYGN+ GF GGV A+LVA +CQ +P +V FF
Sbjct: 200 VPKPTVFKHALRCIKMWAQQRAVYGNIFGFPGGVAWAMLVARICQLYPNAVSAVIVEKFF 259
Query: 319 KTYAYWPWPTPVMLQ------------DPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNI 366
Y+ W WP PV+L+ +P L Y + + MP+ P P NI
Sbjct: 260 HIYSQWAWPQPVLLKQIEDGPLQVRVWNPRL----YALDRQHRMPVITPAYPSMCATHNI 315
Query: 367 TRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFV-RVYLSASNQDDLG 425
T ST I +EF RG D+ W L E + +Y ++ V + S +
Sbjct: 316 TSSTQKVILSEFQRGIELMNDINVGKKSWSDLLERHDFFFRYKFYLCIVAATRSTYAEHL 375
Query: 426 DWVGWVKSRFRSLILKVS 443
+ G V+S+ R L+ K+
Sbjct: 376 KYSGMVESKLRLLVQKLE 393
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 190/348 (54%), Gaps = 9/348 (2%)
Query: 69 PLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRR 128
P++ + D + L++ + G+ +E R + KL +V W++ ++ +
Sbjct: 22 PISLATPKDTDCTLTQKLIETLKPYGVFEEEDELQHRILSLGKLNNLVKEWIREISELKN 81
Query: 129 LPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEV 188
LP+ I I T+GSY LGVH +DIDALC+ P + D F + LK + EV
Sbjct: 82 LPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DLFSSFYEKLKQQEEV 140
Query: 189 SEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSG 248
++ V++A VP+++ FDGI ID+ +A L + ++PE++D+ + L++LD +SL+G
Sbjct: 141 KDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNG 200
Query: 249 VRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKG 308
R IL LVP+++ F+ LR IKLWAKR +Y N+ GFLGGV A+LVA CQ +P
Sbjct: 201 CRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNA 260
Query: 309 SLNTLVANFFKTYAYWPWPTPVMLQDPM-----LPAAG---YPSETRSLMPIRLPCSPHE 360
+TLV FF ++ W WP PV+L+ P LP PS+ LMPI P P +
Sbjct: 261 IASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 320
Query: 361 YCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKY 408
N++ ST + EF +G T +++ +W LF+ + +KY
Sbjct: 321 NSTYNVSVSTRAVMVEEFKQGLAITDEILLLKAEWSKLFDAPNFFQKY 368
>sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1
Length = 522
Score = 169 bits (428), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 180/363 (49%), Gaps = 8/363 (2%)
Query: 86 LVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYG 145
L + + + P ++ +K+R I K+ E + W K++ + + ATI YG
Sbjct: 5 LKEFLVKNDMYPMGDQVEKKRKAISKMTEYIQQWGKKIYIESAGVADDTDVKAATIYVYG 64
Query: 146 SYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFK 205
SY L V+G+ SDIDA C+ +DF+ L+ L + P+V E+ + + P +
Sbjct: 65 SYRLNVYGNNSDIDA-CIVSNSTITRDDFYDGLYAELLNNPDVKELKQIPSKRSPHLSMI 123
Query: 206 FDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPD--LE 263
+ I DL ++ S+P+N+D+LN L+++DE ++++GVR I VP+ E
Sbjct: 124 YLNIEFDLNFSRTAYTSLPDNLDILNENILKNMDELDTRAINGVRNTDIIDAFVPNHSEE 183
Query: 264 KFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAY 323
F+ ++R IKLW K+RG+YG ++ FL G+ + ILVA V + + L+ FF+ Y+
Sbjct: 184 AFRVMVRTIKLWTKKRGIYGYVYCFLNGISIEILVAQVISENYQLDNVRLLEKFFQVYSS 243
Query: 324 WPW-PTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGH 382
W W TPVML + ++ I P SP E +IT+ + I+ E RG
Sbjct: 244 WDWLRTPVMLG---TNDDFNDKKKEGVIQILTPASPSENAAFSITKFSLEMIKRELKRGQ 300
Query: 383 NTTRDLMRPDF-DWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLILK 441
+ DW LF+P Y F+ +++S+ + L +G +S +L+
Sbjct: 301 EIVHEFSSEGVNDWAKLFKPRHLFCGYYIFIEFIVTSSSLEGLTTTIGKFESGLVNLMKG 360
Query: 442 VSR 444
+S
Sbjct: 361 LSE 363
>sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1
Length = 484
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 8/152 (5%)
Query: 296 ILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPM-----LPA---AGYPSETR 347
+LVA CQ +P +TLV FF ++ W WP PV+L+ P LP PS+
Sbjct: 1 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRY 60
Query: 348 SLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKK 407
LMPI P P + N++ ST + EF +G T +++ +W LF+ + +K
Sbjct: 61 HLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLVKAEWSKLFDAPNFFQK 120
Query: 408 YARFVRVYLSASNQDDLGDWVGWVKSRFRSLI 439
Y ++ + SA + +WVG V+S+ R L+
Sbjct: 121 YKHYILLLASAPTEKQRLEWVGLVESKIRILV 152
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 117/297 (39%), Gaps = 68/297 (22%)
Query: 95 LVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGS 154
+ PS EE + R I ++E V + W A + +GSY ++
Sbjct: 190 ISPSREEIEIRNQTISTIREAV-----KQLW-----------PDADLHVFGSYSTDLYLP 233
Query: 155 ESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLP 214
SDID + + + L + LK + +E+ V A+VP+++F P
Sbjct: 234 GSDIDCVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFV-------EP 286
Query: 215 YACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKL 274
++ +H+ + S++ +G+ A K I + + D + ++ +K
Sbjct: 287 HSGIHI-------------------DVSFERTNGIEAAKLIREWLDDTPGLRELVLIVKQ 327
Query: 275 WAKRRGVYGNLH-GFLGGVHLAILVAHVCQNH---------PKGSLNTLVANFFKTYAYW 324
+ R + N+H G LGG + LV H PK +L L+ FF+ Y
Sbjct: 328 FLHARRL-NNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKN 386
Query: 325 PWPTPVMLQDPMLPAAGYP-----SETRSLMPIRLPCS-----PHEYCHSNITRSTF 371
V L + GYP S ++ PI+ P S P + +NI+R +F
Sbjct: 387 FGYDDVALG----SSDGYPVYFPKSTWSAIQPIKNPFSLAIQDPGDES-NNISRGSF 438
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid14 PE=1 SV=2
Length = 684
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 45/221 (20%)
Query: 95 LVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGS 154
+ P+ EE R+ ++ ++ + VL W ++ +GS+ ++
Sbjct: 252 ITPTPEEHAVRKTLVSRINQAVLQ-----KW-----------PDVSLYVFGSFETKLYLP 295
Query: 155 ESDIDALCLGPE--FATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILID 212
SD+D + + PE + +D FV+ H+ LK SE+ + A VP+++F +D
Sbjct: 296 TSDLDLVIISPEHHYRGTKKDMFVLAHH-LKKLKLASEVQVITTANVPIIKF------VD 348
Query: 213 LPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCI 272
P +HV + S+ G++ + + +P++ I
Sbjct: 349 -PLTKVHV-------------------DISFNQPGGLKTCLVVNGFMKKYPALRPLVIII 388
Query: 273 KLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTL 313
K + R + G L + LV Q HP+ S ++
Sbjct: 389 KHFLNMRALNEVFLGGLSSYAIVCLVVSFLQLHPRLSTGSM 429
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2
Length = 642
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 105/254 (41%), Gaps = 50/254 (19%)
Query: 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKD 196
+ A + +GS+ ++ SDID + ++ L LK++ + +
Sbjct: 213 SDADLHVFGSFATDLYLPGSDIDCVVNSRNRDKEDRNYIYELARHLKNKGLAIRMEVIVK 272
Query: 197 AKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCIL 256
+VP+++F I+ P + LH+ + S++ +G+ A K I
Sbjct: 273 TRVPIIKF------IE-PQSQLHI-------------------DVSFERTNGLEAAKLIR 306
Query: 257 QLVPDLEKFQPVLRCIKLWAKRRGVYGNLH-GFLGGVHLAILVAHVCQNHPK-------- 307
+ + D + ++ IK + R + N+H G LGG + LV HP+
Sbjct: 307 EWLRDSPGLRELVLIIKQFLHSRRL-NNVHTGGLGGFTVICLVYSFLNMHPRIKSNDIDV 365
Query: 308 -GSLNTLVANFFKTYA--YWPWPTPVMLQD---PMLPAAGY----PSETRSLMPIRLPCS 357
+L L+ +FF+ Y + + + D +P + + PS ++ + I+ P
Sbjct: 366 LDNLGVLLIDFFELYGKNFGYDDVAISISDGYASYIPKSCWRTLEPSRSKFSLAIQDPGD 425
Query: 358 PHEYCHSNITRSTF 371
P ++NI+R +F
Sbjct: 426 P----NNNISRGSF 435
>sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis GN=papd4-b PE=1
SV=1
Length = 509
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 85/219 (38%), Gaps = 37/219 (16%)
Query: 107 NVIQKLKEIVLAWVKRVAWQRRLPKE--QIAETHATILTYGSY-GLGVHGSESDIDALCL 163
++ Q L++ V K+ + L +E QI L S G G+ S++D+ L L
Sbjct: 189 DLFQALQQQVCDLKKKDICRAELQREIQQIFPQSRLYLVGSSLNGFGIRSSDADL-CLVL 247
Query: 164 GPE---FATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRF--KFDGILIDLPYACL 218
E T A +LH +R E AKVP+++F K G DL
Sbjct: 248 KEEPMNQNTEARHILSLLHKHFYTRLSYIERPQFIRAKVPIVKFRDKVSGAEFDL----- 302
Query: 219 HVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKR 278
+V V + N F LR ++ L ++ +P++ IK WA
Sbjct: 303 ---NVNNVVGIRNTFLLR-----TYAYLD---------------KRVRPLVLVIKKWANH 339
Query: 279 RGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANF 317
G+ G L + ++V H Q P+ L +L +
Sbjct: 340 HGINDASRGTLSSYTIVLMVLHYLQTLPEPILPSLQKKY 378
>sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5
PE=3 SV=1
Length = 626
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 97/252 (38%), Gaps = 49/252 (19%)
Query: 139 ATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAK 198
A + +GSY ++ SDID + ++ L + LK +++ + A+
Sbjct: 234 ANLHCFGSYATDLYLPGSDIDCVVNSKSGDKDNKNALYSLASYLKRNGLATQVSVIAKAR 293
Query: 199 VPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQL 258
VP+++F P + +H+ + S++ +GV A K I
Sbjct: 294 VPIIKFV-------EPASQIHI-------------------DLSFERTNGVEAAKIIRGW 327
Query: 259 VPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPK---------GS 309
+ D + ++ +K + R + G LGG + L + HP+ +
Sbjct: 328 LHDTPGLRELVLIVKQFLHARRLNDVHIGGLGGFSIICLAYSFLKLHPRIICRDIEPLQN 387
Query: 310 LNTLVANFF----KTYAYWPWPTPVMLQDPM-LPAAGYPSETRSL-----MPIRLPCSPH 359
L L+ +FF K + Y V D + YP TR+L + I+ P P
Sbjct: 388 LGVLLIDFFELYGKNFGYDDVGIAVSEGDASYINKKEYPELTRNLRGTFNLVIQDPGDP- 446
Query: 360 EYCHSNITRSTF 371
+NI+R +F
Sbjct: 447 ---ANNISRGSF 455
>sp|Q2T9F4|IN4L2_HUMAN Integrator complex subunit 4-like protein 2 OS=Homo sapiens
GN=INTS4L2 PE=2 SV=1
Length = 439
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 104 KRRNVIQKLKEIVLA--WVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESD---- 157
++R ++ KE+ + + W+ PKE++ ++ G+ G VHG E +
Sbjct: 121 RKRTAHERAKELYSSGEFSSGRKWEDDAPKEEVDTGAVNLIESGACGAFVHGLEDEMYEV 180
Query: 158 ----IDALCL----GPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAK--VPLMRFKFD 207
++ALC+ P FA DF V + N + IH ++ + L + D
Sbjct: 181 RIAAVEALCMLAQSSPSFAEKCLDFLVDMFNDEIEEVRLQSIHTMRKISNNITLREDQLD 240
Query: 208 GIL 210
+L
Sbjct: 241 TVL 243
>sp|Q96LV5|IN4L1_HUMAN Integrator complex subunit 4-like protein 1 OS=Homo sapiens
GN=INTS4L1 PE=2 SV=1
Length = 439
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 104 KRRNVIQKLKEIVLA--WVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESD---- 157
++R ++ KE+ + + W+ PKE++ ++ G+ G VHG E +
Sbjct: 121 RKRTAHERAKELYSSGEFSSGRKWEDDAPKEEVDTGAVNLIESGACGAFVHGLEDEMYEV 180
Query: 158 ----IDALCL----GPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAK--VPLMRFKFD 207
++ALC+ P FA DF V + N + IH ++ + L + D
Sbjct: 181 RIAAVEALCMLAQSSPSFAEKCLDFLVDMFNDEIEEVRLQSIHTMRKISNNITLREDQLD 240
Query: 208 GIL 210
+L
Sbjct: 241 TVL 243
>sp|Q58323|COABC_METJA Coenzyme A biosynthesis bifunctional protein CoaBC
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=coaBC
PE=3 SV=1
Length = 403
Score = 35.8 bits (81), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 19 YNFVD---FYPQNANFGVVTPQSLGVINPNLISPSQVLVPCNSPVFLVPSFNFPLNPSV- 74
YN D YP AN +++ +LG+ + N+++ + ++ N P+F+VP+ + + ++
Sbjct: 91 YNECDCLLIYPATAN--IISKINLGIAD-NIVNTTALMFFGNKPIFIVPAMHENMFNAIK 147
Query: 75 --LDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKL 112
+D++ E+ + ++ EG ED + VI+K+
Sbjct: 148 RHIDKLKEKDKIYIISPKFEEGKAKVANIEDVVKAVIEKI 187
>sp|Q4KMD7|STPAP_DANRE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Danio
rerio GN=tut1 PE=2 SV=1
Length = 797
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 36/154 (23%)
Query: 156 SDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPY 215
SDID P A + E V+L K P V ++ + A++P+++F
Sbjct: 255 SDIDLSTASP--AEILELVAVILR---KCVPGVHKVQALSTARLPVVKFSH--------- 300
Query: 216 ACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLE-KFQPVLRCIKL 274
L++ ++ + N +R N LQL ++ + +P++ I+L
Sbjct: 301 ---KELNLQGDITINNRLAVR---------------NTKFLQLCSGIDSRLRPLVYTIRL 342
Query: 275 WAKRRGVYGNLHG---FLGGVHLAILVAHVCQNH 305
WAK++ + GNL G L L +LV QN
Sbjct: 343 WAKQKQLAGNLSGPGPLLNNYALTLLVIFFLQNR 376
>sp|Q8CIM8|INT4_MOUSE Integrator complex subunit 4 OS=Mus musculus GN=Ints4 PE=2 SV=1
Length = 964
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 125 WQRRLPKEQIAETHATILTYGSYGLGVHGSESD--------IDALCL----GPEFATMAE 172
W PKE+I ++ G+ G VHG E + ++ALC+ P FA
Sbjct: 355 WGDDAPKEEIDTGAVNLIESGACGAFVHGLEDEMYEVRIAAVEALCMLAQSSPSFAEKCL 414
Query: 173 DFFVVLHNMLKSRPEVSEIHCVKDAK--VPLMRFKFDGIL 210
DF V + N + IH ++ + L + D +L
Sbjct: 415 DFLVDMFNDEIEEVRLQSIHTMRKISNNITLREDQLDTVL 454
>sp|Q68F70|INT4_XENLA Integrator complex subunit 4 OS=Xenopus laevis GN=ints4 PE=2 SV=1
Length = 969
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 34/177 (19%)
Query: 125 WQRRLPKEQIAETHATILTYGSYGLGVHGSESD--------IDALCL----GPEFATMAE 172
W PKE++ ++ G+ G VHG E + +++LCL FA
Sbjct: 356 WGDDAPKEELDTGAVNLIDSGACGAFVHGLEDEMYEVRIAAVESLCLLARSSAPFAEKCL 415
Query: 173 DFFVVLHNMLKSRPEVSEIHCVKDAK--VPLMRFKFDGILI-------DLPYA-----CL 218
DF V + N + IH ++ + L + D +L D+ A C
Sbjct: 416 DFLVDMFNDEIEEVRLQSIHTMRKISDNITLREDQLDTVLAVLEDKSRDIREALHELLCC 475
Query: 219 HVLSVPENVDVLNPFFLRDLD------ETSWKSLS--GVRANKCILQLVPDLEKFQP 267
+S E + + L++L E+ WK L G R +L LVP+L P
Sbjct: 476 TNVSTKECIQLALVELLKNLSKYPTDRESIWKCLKFLGSRHPTLVLSLVPELLSTHP 532
>sp|Q96HW7|INT4_HUMAN Integrator complex subunit 4 OS=Homo sapiens GN=INTS4 PE=1 SV=2
Length = 963
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 125 WQRRLPKEQIAETHATILTYGSYGLGVHGSESD--------IDALCL----GPEFATMAE 172
W PKE++ ++ G+ G VHG E + ++ALC+ P FA
Sbjct: 354 WGDDAPKEEVDTGAVNLIESGACGAFVHGLEDEMYEVRIAAVEALCMLAQSSPSFAEKCL 413
Query: 173 DFFVVLHNMLKSRPEVSEIHCVKDAK--VPLMRFKFDGIL 210
DF V + N + IH ++ + L + D +L
Sbjct: 414 DFLVDMFNDEIEEVRLQSIHTMRKISNNITLREDQLDTVL 453
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,810,043
Number of Sequences: 539616
Number of extensions: 7589808
Number of successful extensions: 15668
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 15612
Number of HSP's gapped (non-prelim): 34
length of query: 444
length of database: 191,569,459
effective HSP length: 121
effective length of query: 323
effective length of database: 126,275,923
effective search space: 40787123129
effective search space used: 40787123129
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)