Query 013399
Match_columns 444
No_of_seqs 195 out of 749
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:27:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2245 Poly(A) polymerase and 100.0 4E-113 1E-117 875.7 33.4 385 56-444 10-402 (562)
2 PTZ00418 Poly(A) polymerase; P 100.0 6E-105 1E-109 843.5 37.5 385 56-444 47-446 (593)
3 COG5186 PAP1 Poly(A) polymeras 100.0 2.8E-92 6.1E-97 699.0 26.3 373 69-443 12-393 (552)
4 PF04928 PAP_central: Poly(A) 100.0 5.3E-63 1.1E-67 483.0 20.1 239 68-402 8-254 (254)
5 COG5260 TRF4 DNA polymerase si 100.0 1.2E-36 2.7E-41 313.7 24.1 262 77-388 52-343 (482)
6 KOG1906 DNA polymerase sigma [ 100.0 1E-32 2.2E-37 290.2 23.7 261 77-387 58-341 (514)
7 KOG2277 S-M checkpoint control 99.8 6.4E-20 1.4E-24 198.7 22.0 263 82-388 114-431 (596)
8 cd05402 NT_PAP_TUTase Nucleoti 99.8 9.9E-21 2.1E-25 163.0 12.5 111 104-258 1-113 (114)
9 TIGR03671 cca_archaeal CCA-add 99.7 3.5E-15 7.6E-20 154.4 20.6 238 88-379 4-249 (408)
10 PRK13300 tRNA CCA-pyrophosphor 99.6 2.9E-14 6.2E-19 149.6 23.2 237 87-375 4-248 (447)
11 COG1746 CCA1 tRNA nucleotidylt 99.3 1.1E-10 2.4E-15 120.3 21.0 233 85-372 6-247 (443)
12 PF03813 Nrap: Nrap protein; 99.1 1.1E-08 2.4E-13 117.5 21.5 258 146-414 1-326 (972)
13 smart00572 DZF domain in DSRM 98.4 2.1E-05 4.5E-10 77.0 18.6 215 140-386 4-230 (246)
14 KOG2054 Nucleolar RNA-associat 98.3 1E-05 2.2E-10 91.0 14.6 283 138-433 147-480 (1121)
15 PF03828 PAP_assoc: Cid1 famil 98.1 2.1E-06 4.6E-11 65.7 2.7 51 309-359 1-59 (60)
16 cd05400 NT_2-5OAS_ClassI-CCAas 97.9 6.7E-05 1.4E-09 66.9 9.9 76 138-216 27-109 (143)
17 cd05397 NT_Pol-beta-like Nucle 97.8 2.5E-05 5.4E-10 58.1 4.7 26 138-163 17-42 (49)
18 PF09249 tRNA_NucTransf2: tRNA 97.8 2.7E-05 5.8E-10 67.6 5.4 91 269-373 3-95 (114)
19 PF01909 NTP_transf_2: Nucleot 97.8 3.2E-05 7E-10 63.4 5.0 32 138-169 14-45 (93)
20 cd05403 NT_KNTase_like Nucleot 97.3 0.00037 8E-09 56.6 5.2 32 138-169 18-49 (93)
21 PF03813 Nrap: Nrap protein; 97.2 0.0027 5.9E-08 73.7 13.0 150 248-401 668-839 (972)
22 PF07528 DZF: DZF domain; Int 97.1 0.038 8.3E-07 54.6 17.3 210 144-385 2-231 (248)
23 COG1669 Predicted nucleotidylt 96.5 0.006 1.3E-07 51.8 5.8 47 105-167 7-53 (97)
24 PF14091 DUF4269: Domain of un 96.5 0.029 6.3E-07 51.5 10.6 119 139-284 16-144 (152)
25 COG1708 Predicted nucleotidylt 95.8 0.041 8.8E-07 47.0 7.8 30 137-166 25-54 (128)
26 PF10421 OAS1_C: 2'-5'-oligoad 95.8 0.033 7.2E-07 52.9 7.7 46 262-307 41-87 (190)
27 PRK13746 aminoglycoside resist 95.4 0.045 9.8E-07 54.6 7.2 31 139-169 29-59 (262)
28 PRK02098 phosphoribosyl-dephos 93.8 0.13 2.9E-06 50.0 6.2 31 138-168 120-156 (221)
29 TIGR03135 malonate_mdcG holo-A 93.4 0.18 3.8E-06 48.5 6.1 45 138-184 108-158 (202)
30 cd00141 NT_POLXc Nucleotidyltr 92.8 1 2.2E-05 45.9 11.0 113 137-289 159-277 (307)
31 PF14792 DNA_pol_B_palm: DNA p 89.9 0.33 7.1E-06 42.2 3.4 53 137-190 23-78 (112)
32 KOG2054 Nucleolar RNA-associat 89.7 3.2 6.9E-05 48.2 11.7 108 250-361 806-928 (1121)
33 cd05401 NT_GlnE_GlnD_like Nucl 88.3 2.7 5.9E-05 38.5 8.5 48 137-184 54-101 (172)
34 COG1665 Predicted nucleotidylt 87.8 0.1 2.2E-06 52.1 -1.4 78 139-217 122-214 (315)
35 KOG3793 Transcription factor N 87.4 34 0.00075 34.5 15.8 212 79-323 38-264 (362)
36 COG2844 GlnD UTP:GlnB (protein 82.9 5.1 0.00011 45.8 8.7 51 115-169 47-97 (867)
37 PF10620 MdcG: Phosphoribosyl- 80.4 3.7 7.9E-05 39.7 5.8 41 137-178 115-161 (213)
38 PF03445 DUF294: Putative nucl 80.1 11 0.00023 33.8 8.3 48 137-184 48-96 (138)
39 PF09970 DUF2204: Nucleotidyl 79.9 8.8 0.00019 36.1 8.0 81 138-224 16-100 (181)
40 PRK05007 PII uridylyl-transfer 78.9 8.6 0.00019 44.8 9.2 56 108-167 54-109 (884)
41 PF10127 Nuc-transf: Predicted 76.5 2.3 5.1E-05 41.5 3.2 27 139-165 21-47 (247)
42 KOG2534 DNA polymerase IV (fam 73.5 12 0.00026 38.5 7.3 49 137-186 170-218 (353)
43 PRK00227 glnD PII uridylyl-tra 71.8 16 0.00034 41.5 8.6 65 102-182 5-69 (693)
44 PRK01293 phosphoribosyl-dephos 70.7 10 0.00023 36.6 6.0 44 138-183 109-158 (207)
45 PRK01759 glnD PII uridylyl-tra 70.0 19 0.0004 41.9 8.9 56 108-167 30-85 (854)
46 PF03710 GlnE: Glutamate-ammon 68.6 16 0.00034 36.0 6.9 61 124-184 112-179 (247)
47 smart00483 POLXc DNA polymeras 66.8 68 0.0015 33.0 11.5 30 137-167 163-192 (334)
48 PRK03059 PII uridylyl-transfer 63.8 28 0.00061 40.5 8.8 53 108-166 37-89 (856)
49 COG2413 Predicted nucleotidylt 63.5 13 0.00029 35.9 5.0 28 139-166 38-65 (228)
50 PRK00275 glnD PII uridylyl-tra 61.8 33 0.00072 40.1 8.9 31 137-167 77-107 (895)
51 PRK03381 PII uridylyl-transfer 61.7 31 0.00067 39.7 8.5 30 137-166 56-85 (774)
52 COG3541 Predicted nucleotidylt 61.4 4.1 8.8E-05 40.3 1.2 21 143-163 15-35 (248)
53 PF03296 Pox_polyA_pol: Poxvir 60.3 9.4 0.0002 34.7 3.2 61 87-161 10-76 (149)
54 PRK14109 bifunctional glutamin 59.4 28 0.00061 41.3 7.8 48 137-184 722-773 (1007)
55 PRK04374 PII uridylyl-transfer 59.3 40 0.00087 39.3 9.0 29 138-166 72-100 (869)
56 TIGR01693 UTase_glnD [Protein- 58.0 40 0.00086 39.1 8.7 31 137-167 42-72 (850)
57 PRK08609 hypothetical protein; 58.0 66 0.0014 35.7 10.1 109 137-289 174-283 (570)
58 PHA02603 nrdC.11 hypothetical 53.5 7.2 0.00016 40.3 1.5 25 140-164 5-29 (330)
59 PHA02996 poly(A) polymerase la 49.1 20 0.00044 37.9 4.0 62 87-162 127-194 (467)
60 PRK14109 bifunctional glutamin 44.7 89 0.0019 37.2 8.9 48 137-184 214-265 (1007)
61 PF10281 Ish1: Putative stress 42.5 14 0.00031 25.7 1.2 32 82-114 5-36 (38)
62 COG1796 POL4 DNA polymerase IV 37.3 65 0.0014 33.3 5.4 70 139-217 181-250 (326)
63 PRK11072 bifunctional glutamin 36.5 1.2E+02 0.0025 36.0 8.1 60 125-184 667-736 (943)
64 COG1391 GlnE Glutamine synthet 36.2 2.7E+02 0.0058 32.9 10.6 45 140-184 173-225 (963)
65 PF12633 Adenyl_cycl_N: Adenyl 35.1 69 0.0015 31.0 5.0 33 137-169 96-128 (204)
66 PRK11072 bifunctional glutamin 32.6 1.6E+02 0.0034 34.9 8.3 48 137-184 153-208 (943)
67 PRK05092 PII uridylyl-transfer 31.9 3.8E+02 0.0083 31.6 11.3 30 137-166 104-133 (931)
68 PRK14108 bifunctional glutamin 30.6 1.5E+02 0.0032 35.3 7.7 48 137-184 700-757 (986)
69 KOG2708 Predicted metalloprote 30.5 2.9E+02 0.0063 27.7 8.4 83 94-208 39-134 (336)
70 PF07357 DRAT: Dinitrogenase r 29.7 15 0.00032 36.7 -0.5 34 403-436 80-113 (262)
71 PF08986 DUF1889: Domain of un 28.5 71 0.0015 27.5 3.4 52 73-124 40-94 (119)
72 PF03281 Mab-21: Mab-21 protei 27.6 2.3E+02 0.0049 28.1 7.5 94 262-380 190-289 (292)
73 PRK14108 bifunctional glutamin 27.2 4E+02 0.0086 31.8 10.4 48 137-184 185-238 (986)
74 cd05398 NT_ClassII-CCAase Nucl 20.9 6E+02 0.013 22.6 8.6 67 138-218 16-87 (139)
No 1
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification]
Probab=100.00 E-value=4.5e-113 Score=875.65 Aligned_cols=385 Identities=44% Similarity=0.776 Sum_probs=367.8
Q ss_pred CCCCcccCCCCCCCCCCCCCChHHHHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhc
Q 013399 56 CNSPVFLVPSFNFPLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIA 135 (444)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~~~~~~d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~ 135 (444)
+.++..++++|.+... |++.|+.++.+|++.|+++|+||++||..+|.+||.+|++|+++|+++++.++|+++.++.
T Consensus 10 ~~~~~~Gvt~PiS~a~---p~~~d~~lt~~L~~~L~~~g~fEs~eEt~~R~~VL~~L~~iVk~wVk~vs~~k~~p~~~~~ 86 (562)
T KOG2245|consen 10 PSTKSYGVTQPISTAG---PTEADIALTQELIKTLKNEGLFESKEETQRREEVLGKLNQIVKEWVKKVSEQKGLPDGMIE 86 (562)
T ss_pred CccccccccCCcccCC---CcHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhh
Confidence 4578899988766554 5599999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEECCeeecccc
Q 013399 136 ETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPY 215 (444)
Q Consensus 136 ~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~gI~vDLsf 215 (444)
.++++|+|||||++|||+|+||||.+|++|+|++ |+|||..|.++|++.++|+++++|++|+||||||+++||+|||.|
T Consensus 87 ~aggkIftfGSYRLGVhg~GADIDtLcV~Prhv~-R~DFF~sf~~mL~~~~eVteL~~V~dAfVPiikfKf~GI~IDllf 165 (562)
T KOG2245|consen 87 NAGGKIFTFGSYRLGVHGPGADIDTLCVGPRHVS-RSDFFTSFYDMLKERPEVTELHAVEDAFVPIIKFKFDGIEIDLLF 165 (562)
T ss_pred hcCceEEeccceeecccCCCCCcceeeecccccc-HHHHHHHHHHHHhcCccccccccccccccceEEEEecCeeeeeee
Confidence 9999999999999999999999999999999999 579999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccccCCCchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHH
Q 013399 216 ACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLA 295 (444)
Q Consensus 216 ~~~~~~~~p~~~~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~a 295 (444)
|+++...+|+++++.||.+|++||++|+|||||||+||.|+++||+.+.||.++|+||+|||+||||+|.+|||||++||
T Consensus 166 ArL~l~~VP~dldl~ddslLknlDe~~vrSLNGcRVtdqiL~LVPn~~~F~~tLRaiKlWAKrrgVYsN~~GF~GGV~wA 245 (562)
T KOG2245|consen 166 ARLALPVVPEDLDLSDDSLLKNLDERCVRSLNGCRVTDQILKLVPNQENFRITLRAIKLWAKRRGVYSNVMGFLGGVAWA 245 (562)
T ss_pred hhcccccCCCcccccchHhhhcccHHHHHHhcCcCHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhhccCCCCCceeecCCC-----CCCCCC---CCCCCCcceeeCCCCCCCcccCCCC
Q 013399 296 ILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPM-----LPAAGY---PSETRSLMPIRLPCSPHEYCHSNIT 367 (444)
Q Consensus 296 lLva~~~Ql~P~~sl~~LL~~FF~~Ys~fdw~~pV~l~~g~-----~~~~~~---~~~~~~~m~IitP~~P~~N~a~nVs 367 (444)
||||++||+|||++++.|+.+||..|++|+||+||+++... .+.|++ +.+..|+||||||+||+||++||||
T Consensus 246 ~LVARiCQLYPNA~~s~Lv~kfF~ifs~W~WP~PVlL~~ie~~~L~~~VWdPr~n~~DryHlMPIITPAyP~~nsthNVS 325 (562)
T KOG2245|consen 246 MLVARICQLYPNASPSTLVAKFFRVFSQWNWPNPVLLKPIEEGNLNLPVWDPRVNPSDRYHLMPIITPAYPQMNSTHNVS 325 (562)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHhhccCCCceEeccccccccCccccCCCCCCCCcceecccccCCccccccccccc
Confidence 99999999999999999999999999999999999987542 234543 2223699999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCCCCcccccCcCCCchhhcceeEEEEEeCChhcccceeeeehhhHHHHHHhhcC
Q 013399 368 RSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLILKVSR 444 (444)
Q Consensus 368 ~st~~~I~~Ef~rA~~il~~i~~~~~~W~~L~~~~~ff~~y~~yl~i~v~a~~~~~~~~~~G~vESrlr~Lv~~LE~ 444 (444)
+||+++|++||+||++|+++|..++.+|++|||+++||.+|+|||+|+++|.++|++.+|.||||||+|.|+.+||+
T Consensus 326 ~ST~~Vi~~Ef~~g~~I~~~i~~~k~~W~~LFE~~~FF~rYk~yl~i~~~A~~~ed~l~w~G~vESriR~Lv~klE~ 402 (562)
T KOG2245|consen 326 RSTLKVITEEFKRGLEICDDIELNKLDWSDLFELYNFFSRYKHYLQITASAATEEDLLKWVGWVESRIRQLVLKLER 402 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhHHHHHHhhHheeeeeccChHHHhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999995
No 2
>PTZ00418 Poly(A) polymerase; Provisional
Probab=100.00 E-value=6.2e-105 Score=843.49 Aligned_cols=385 Identities=33% Similarity=0.599 Sum_probs=363.4
Q ss_pred CCCCcccCCCCCCCCCCCCCChHHHHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhc
Q 013399 56 CNSPVFLVPSFNFPLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIA 135 (444)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~~~~~~d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~ 135 (444)
+..+..++.. |++.+.|++.|++.+++|+++|+++|++||+||.++|++|+++|++++++|+++++.++|++++.+.
T Consensus 47 ~~~~~~Gvt~---Pis~~~Pt~~d~~~s~~L~~~L~~~~~fes~ee~~kR~~vL~~L~~iv~~wv~~vs~~k~~~~~~~~ 123 (593)
T PTZ00418 47 ECALSYGVTD---PISLNGPTEEDLKLSNELINLLKSYNLYETEEGKKKRERVLGSLNKLVREFVVEASIEQGINEEEAS 123 (593)
T ss_pred CcccccCCCC---CccCCCCChHHHhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHh
Confidence 3444455544 6677888899999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCeEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEECCeeecccc
Q 013399 136 ETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPY 215 (444)
Q Consensus 136 ~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~gI~vDLsf 215 (444)
..+++|+|||||++|||.|+||||++|++|.+++ +++||..|.++|++.++|+++++|++|+||||||+++||+|||+|
T Consensus 124 ~~~g~I~tfGSYrLGV~~pgSDID~L~V~P~~vt-redFF~~f~~~L~~~~~V~eL~~V~~A~VPiIk~~~~GI~iDL~f 202 (593)
T PTZ00418 124 QISGKLFTFGSYRLGVVAPGSDIDTLCLAPRHIT-RESFFSDFYAKLQQDPNITKLQPVPDAYTPVIKFVYDGIDIDLLF 202 (593)
T ss_pred cCCeEEEEeccccccCCCCCCcccEEEECCCCCC-HHHHHHHHHHHHhcCCCcceeeccCccccCeEEEEECCEEEeeee
Confidence 8999999999999999999999999999999999 689999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccccCCCch-hccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHH
Q 013399 216 ACLHVLSVPENVDVLNPF-FLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHL 294 (444)
Q Consensus 216 ~~~~~~~~p~~~~~~~~~-~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~ 294 (444)
|+++...+|+++++.+++ +|++||++++|||||+|++|+|+++||+.+.||.++|+||+|||+||||+|.+|||||++|
T Consensus 203 a~l~~~~vp~~~~~l~d~~lL~nlde~s~rSLNG~Rvtd~Il~lVPn~~~Fr~aLR~IKlWAkrRGIYsNv~GflGGV~w 282 (593)
T PTZ00418 203 ANLPLPTIPDCLNSLDDDYILRNVDEKTVRSLNGCRVADLILASVPNKDYFRTTLRFIKLWAKRRGIYSNVLGYLGGVSW 282 (593)
T ss_pred cccCCCCCCccccccCchhhhhcCCHHHhhhhccHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccccccccccchHHH
Confidence 999999999999988887 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhhccCCCCCceeecCCC----------CCCCCCC---CCCCCcceeeCCCCCCCc
Q 013399 295 AILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPM----------LPAAGYP---SETRSLMPIRLPCSPHEY 361 (444)
Q Consensus 295 alLva~~~Ql~P~~sl~~LL~~FF~~Ys~fdw~~pV~l~~g~----------~~~~~~~---~~~~~~m~IitP~~P~~N 361 (444)
|||||++||+|||+++++||.+||.+|++|+|++||.+++.. .+.|++. ++.+|+|||+||+||.+|
T Consensus 283 AILvARVCQLyPna~~s~Lv~~FF~iys~W~Wp~PV~L~~i~~~~~~~g~~~~~VWdPr~~~~dr~h~MPIITPayP~mN 362 (593)
T PTZ00418 283 AILTARICQLYPNFAPSQLIHKFFRVYSIWNWKNPVLLCKIKEVPNIPGLMNFKVWDPRVNPQDRAHLMPIITPAFPSMN 362 (593)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCCCeEcccccccccCCcccCCcccCCCCCcccccccCCeecCCCCCcc
Confidence 999999999999999999999999999999999999986421 1346542 334799999999999999
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHHHhhcC-CCCCcccccCcCCCchhhcceeEEEEEeCChhcccceeeeehhhHHHHHH
Q 013399 362 CHSNITRSTFYKIRTEFLRGHNTTRDLMR-PDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLIL 440 (444)
Q Consensus 362 ~a~nVs~st~~~I~~Ef~rA~~il~~i~~-~~~~W~~L~~~~~ff~~y~~yl~i~v~a~~~~~~~~~~G~vESrlr~Lv~ 440 (444)
+|+|||.+|+++|++||+||+++++++.. ++.+|++||+|++||.+|++||+|++.|.+++++.+|.||||||||.|+.
T Consensus 363 st~nVt~sT~~vI~~Ef~Ra~~i~~~i~~~~~~~W~~Lfep~~Ff~~Yk~yl~V~v~a~~~~~~~~w~G~VESRlR~Lv~ 442 (593)
T PTZ00418 363 STHNVTYTTKRVITEEFKRAHEIIKYIEKNSENTWTNVLEPLDFFTSYKHFLVIQVYATNEHVHNKWEGWIESKIRFLIK 442 (593)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHcCCcchhhhcceEEEEEEEECCHHHhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999887 88899999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q 013399 441 KVSR 444 (444)
Q Consensus 441 ~LE~ 444 (444)
+||+
T Consensus 443 ~LE~ 446 (593)
T PTZ00418 443 KLET 446 (593)
T ss_pred Hhhc
Confidence 9995
No 3
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]
Probab=100.00 E-value=2.8e-92 Score=698.97 Aligned_cols=373 Identities=35% Similarity=0.600 Sum_probs=357.6
Q ss_pred CCCCCCCChHHHHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccc
Q 013399 69 PLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYG 148 (444)
Q Consensus 69 ~l~~~~~~~~d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~ 148 (444)
|+++.-.|+++.+++.+|++.|++.|.|+++.|-+.|.+|+++|+.++++++.+++.++++.+.++..++++|++||||+
T Consensus 12 P~ST~~aTe~En~Ln~~li~eLk~~g~FE~~~E~~~Rv~VL~~Lq~~~~eFV~~vs~~K~m~dgmar~aGGKIFTyGSYR 91 (552)
T COG5186 12 PLSTREATEEENRLNGELIKELKERGFFEDDKEGQTRVRVLGKLQFMVREFVARVSRNKGMGDGMARPAGGKIFTYGSYR 91 (552)
T ss_pred CcccccccHHHhhhhHHHHHHHHHcCCcCCchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCceeeeeccee
Confidence 45566677899999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred cCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEECCeeeccccccccccCCCcccc
Q 013399 149 LGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVD 228 (444)
Q Consensus 149 lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~gI~vDLsf~~~~~~~~p~~~~ 228 (444)
+|+|.|+||||.+|+.|.|++ |++||+.|..+|+..++++++..|++|.|||||++++||+|||.|+++..+.+|.++.
T Consensus 92 LGVhgpGsDIDtLvvVPkHVs-R~dFFt~f~~~Lrer~ei~eva~vpDAfVPIIK~KF~GIsIDLifARLs~P~Vp~~l~ 170 (552)
T COG5186 92 LGVHGPGSDIDTLVVVPKHVS-RSDFFTHFYEELRERPEIEEVAKVPDAFVPIIKLKFQGISIDLIFARLSIPVVPDGLN 170 (552)
T ss_pred eeccCCCCCcceEEEeccccc-HHHHHHHHHHHhccCcchhhhccCCcccceeEEEEecCccceeeeeeccCCcCCCccc
Confidence 999999999999999999998 6899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHHHHHHHHHHhCCCC
Q 013399 229 VLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKG 308 (444)
Q Consensus 229 ~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~alLva~~~Ql~P~~ 308 (444)
+.|+.+|++|||+|++||||.|++|.|++++|+...|+.++|+||+||++|.+|.|.+||.||++|++|||++||+|||+
T Consensus 171 Lsd~nLLk~~dEkcilsLNGtRVTDeiL~LVP~~~vF~~ALRaIK~WAqRRavYaN~~GfpGGVAwam~VARiCQLYPNA 250 (552)
T COG5186 171 LSDDNLLKSMDEKCILSLNGTRVTDEILNLVPSVKVFHSALRAIKYWAQRRAVYANPYGFPGGVAWAMCVARICQLYPNA 250 (552)
T ss_pred ccchhhhhcchHHHHHhhcCceehHHHHHhCCchHHHHHHHHHHHHHHHhhhhhccccCCcchHHHHHHHHHHHhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhccCCCCCceeecCCC--C---CCCC----CCCCCCCcceeeCCCCCCCcccCCCChhhHHHHHHHHH
Q 013399 309 SLNTLVANFFKTYAYWPWPTPVMLQDPM--L---PAAG----YPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFL 379 (444)
Q Consensus 309 sl~~LL~~FF~~Ys~fdw~~pV~l~~g~--~---~~~~----~~~~~~~~m~IitP~~P~~N~a~nVs~st~~~I~~Ef~ 379 (444)
+...++.+||+++++|+||+||++++.. + ..|+ ++|. .|.||||||+||+|+.+||+|.||..+|..||.
T Consensus 251 ~S~vIv~kFF~ils~WnWPqPviLkPieDgplqvrvWnPKvYpsDk-~HRMPvITPAYPSMCATHNit~STq~vIl~Efv 329 (552)
T COG5186 251 SSFVIVCKFFEILSSWNWPQPVILKPIEDGPLQVRVWNPKVYPSDK-YHRMPVITPAYPSMCATHNITNSTQHVILMEFV 329 (552)
T ss_pred chHhHHHHHHHHHHhcCCCCCeEeeeccCCCeeEEeeCCccCcccc-cccCccccCCchhhhhhccccchhhhhHHHHHH
Confidence 9999999999999999999999987532 1 2343 3444 699999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcccccCcCCCchhhcceeEEEEEeCChhcccceeeeehhhHHHHHHhhc
Q 013399 380 RGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLILKVS 443 (444)
Q Consensus 380 rA~~il~~i~~~~~~W~~L~~~~~ff~~y~~yl~i~v~a~~~~~~~~~~G~vESrlr~Lv~~LE 443 (444)
||++|+.++..+..+|.+||+..|||.+|++|+.|+..+.++|++.+|.|+|||++|.|+..||
T Consensus 330 Ra~~I~~di~~n~~~w~~lFek~DFF~RYk~yleitA~s~~~E~~lKW~GlvESKiR~Lv~klE 393 (552)
T COG5186 330 RAHKILSDIERNALDWRRLFEKSDFFSRYKLYLEITAMSSCEEDFLKWEGLVESKIRILVSKLE 393 (552)
T ss_pred HHHHhhhhHhhccccHHHHHHhhhHHHHHhHhhhhhhhhcchhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 4
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a template-independent RNA polymerase which specifically incorporates ATP at the 3' end of mRNA. The crystal structure of bovine poly(A) polymerase bound to an ATP analog at 2.5 A resolutio has been determined []. The structure revealed expected and unexpected similarities to other proteins. As expected, the catalytic domain of poly(A) polymerase shares substantial structural homology with other nucleotidyl transferases such as DNA polymerase beta and kanamycin transferase. The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta-sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different.; GO: 0004652 polynucleotide adenylyltransferase activity, 0006351 transcription, DNA-dependent; PDB: 1Q79_A 1Q78_A 1F5A_A 2O1P_A 2HHP_A 3C66_B 1FA0_A 2Q66_A.
Probab=100.00 E-value=5.3e-63 Score=482.97 Aligned_cols=239 Identities=45% Similarity=0.760 Sum_probs=187.5
Q ss_pred CCCCCCCCChHHHHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEeccc
Q 013399 68 FPLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSY 147 (444)
Q Consensus 68 ~~l~~~~~~~~d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~ 147 (444)
.|++.+.|++.|++.+++|+++|++.+++||+||.++|++|+++|++++++|+++
T Consensus 8 ~PIS~~~Pt~~Dl~~s~~L~~~l~~~~~~es~ee~~~R~~vl~~L~~iv~~wv~~------------------------- 62 (254)
T PF04928_consen 8 KPISLAPPTEKDLKRSASLEEFLKDYGLFESEEEEQKREEVLRKLQQIVKEWVKQ------------------------- 62 (254)
T ss_dssp --S------HHHHHHHHHHHHHHHHCT-S--HHHHHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred CCccCCCCChhhHHhHHHHHHHHHHcCCCCChHHHhHHHHHHHHHHHHHHHHHHh-------------------------
Confidence 4677788889999999999999999999999999999999999999999999852
Q ss_pred ccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEECCeeeccccccccccCCCccc
Q 013399 148 GLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENV 227 (444)
Q Consensus 148 ~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~gI~vDLsf~~~~~~~~p~~~ 227 (444)
...++|+++
T Consensus 63 -----------------------------------------------------------------------~~~~~p~~l 71 (254)
T PF04928_consen 63 -----------------------------------------------------------------------ALPRVPEDL 71 (254)
T ss_dssp -----------------------------------------------------------------------SSSSB-TT-
T ss_pred -----------------------------------------------------------------------hhcCCCccc
Confidence 445789999
Q ss_pred cCCCchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHHHHHHHHHHhCCC
Q 013399 228 DVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPK 307 (444)
Q Consensus 228 ~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~alLva~~~Ql~P~ 307 (444)
++.++++|++||++|++||||+|++++|+++||+.+.||.++|+||+|||+||||+|++|||||++|+||||++||+||+
T Consensus 72 ~~~~~~~l~~ld~~s~~sLnG~Rv~~~il~~Vp~~~~Fr~~lR~IK~WAk~RGIYsn~~GylGGI~waILvArvcql~Pn 151 (254)
T PF04928_consen 72 DLLDDDPLRNLDEASVRSLNGVRVTDYILRLVPNQETFRTALRFIKLWAKRRGIYSNVFGYLGGIHWAILVARVCQLYPN 151 (254)
T ss_dssp -TT-GGGGTT--HHHHHHHHHHHHHHHHHCTSS-HHHHHHHHHHHHHHHHHTT-B-CCCTSB-HHHHHHHHHHHHHHSTT
T ss_pred ccCCchhhhCCCHhhccCcccccHHHHHHHHCCCHHHHHHHHHHHHHHHHHccccchhhccchHHHHHHHHHHHHHHCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccCCCCCceeecCCC-----CCCCCCC---CCCCCcceeeCCCCCCCcccCCCChhhHHHHHHHHH
Q 013399 308 GSLNTLVANFFKTYAYWPWPTPVMLQDPM-----LPAAGYP---SETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFL 379 (444)
Q Consensus 308 ~sl~~LL~~FF~~Ys~fdw~~pV~l~~g~-----~~~~~~~---~~~~~~m~IitP~~P~~N~a~nVs~st~~~I~~Ef~ 379 (444)
+++++||.+||.+|++|+|++||.+++.. .+.|++. +..+|+|||+||+||.+|+|+|||++|+++|++||+
T Consensus 152 ~~~~~ll~~FF~~ys~W~W~~PV~l~~~~~~~~~~~~w~p~~~~~~~~~~MpIiTP~yP~~Nst~nVt~st~~~i~~Ef~ 231 (254)
T PF04928_consen 152 ASPSTLLSRFFQIYSQWDWPNPVVLDPIEDGPLGFKVWNPRLYPRDRRHLMPIITPAYPSMNSTYNVTRSTLRIIREEFQ 231 (254)
T ss_dssp --HHHHHHHHHHHHHCS-TTS-EESS-----SSSCGS--TTT-HHHHC-SS-EE-SSSS--BTTTT--HHHHHHHHHHHH
T ss_pred ccccchHHHHHHHhcCCCCCCceeecccccCcccccCCCCCCCCCCcccceeEccCCCCccccccccCHHHHHHHHHHHH
Confidence 99999999999999999999999997543 2345543 223699999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcccccCcC
Q 013399 380 RGHNTTRDLMRPDFDWHFLFEPF 402 (444)
Q Consensus 380 rA~~il~~i~~~~~~W~~L~~~~ 402 (444)
||+++++++..++.+|++||+|+
T Consensus 232 ra~~i~~~~~~~~~~W~~L~e~~ 254 (254)
T PF04928_consen 232 RAHEILSEILKGGASWSDLFEPH 254 (254)
T ss_dssp HHHHHHHHHHTTSS-HHHCT---
T ss_pred HHHHHHHHHHcCCCCHHHHcCCC
Confidence 99999999999999999999984
No 5
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-36 Score=313.66 Aligned_cols=262 Identities=21% Similarity=0.338 Sum_probs=214.0
Q ss_pred hHHHHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCC
Q 013399 77 QMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLA-WVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSE 155 (444)
Q Consensus 77 ~~d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~-w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~ 155 (444)
+..-..+.+|.+++. .+.|+.+|.+.|.+.+++|++++++ | +++.+++|||+.+|+++|.
T Consensus 52 ~~~~~lt~el~~~y~--~I~ps~eEl~~R~~~leklr~~lk~~~-----------------pda~l~vFGS~~t~L~l~~ 112 (482)
T COG5260 52 EESDELTSELLEFYD--YIAPSDEELKRRKALLEKLRTLLKKEF-----------------PDADLKVFGSTETGLALPK 112 (482)
T ss_pred hhHHHHHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHHHHhC-----------------CccceeEecccccccccCc
Confidence 345577888999988 6899999999999999999999985 4 5789999999999999999
Q ss_pred CCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEE--CCeeeccccccccccCCCccccCCCch
Q 013399 156 SDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKF--DGILIDLPYACLHVLSVPENVDVLNPF 233 (444)
Q Consensus 156 SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~--~gI~vDLsf~~~~~~~~p~~~~~~~~~ 233 (444)
||||+|++.+........-...++..|....+..++.+|.+||||||||.+ .|+.|||+|++.
T Consensus 113 SDiDl~I~s~~~~~~et~~~~~l~~~l~~~~~~~~~~~v~tarVPIIKl~d~~s~l~~Disfn~~--------------- 177 (482)
T COG5260 113 SDIDLCIISDPRGYKETRNAGSLASHLFKKNLAKEVVVVSTARVPIIKLVDPQSGLHCDISFNNT--------------- 177 (482)
T ss_pred ccccEEEecCCccccccccHHHHHHHHHHhccCeeeEEEEecccceEEEecCccceEEEeecCch---------------
Confidence 999999998655432111111445555555677888999999999999998 599999999974
Q ss_pred hccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHHHHHHHHHHhCCC------
Q 013399 234 FLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPK------ 307 (444)
Q Consensus 234 ~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~alLva~~~Ql~P~------ 307 (444)
+|+++|..++.++..++++|+|+.+||+||++|.+++++.|+|+||++++||..++|++|.
T Consensus 178 -------------~~~~~akl~~~~~~~~P~lrpLvliIKhwl~~R~ln~~~~GtL~sy~i~cmV~sfLq~~~~~~~~~~ 244 (482)
T COG5260 178 -------------NGIVNAKLIRSYLKEDPRLRPLVLIIKHWLKRRALNDVATGTLSSYTISCMVLSFLQMHPPFLFFDN 244 (482)
T ss_pred -------------hHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHhhcccccCcchhhhhHHHHHHHHHhCCccccccc
Confidence 6899999999999999999999999999999999999999999999999999999999982
Q ss_pred ------------CCHHHHHHHHHHhhc-cCCCCCc-eeecCCCC------CCCCCCCCCCCcceeeCCC-CCCCcccCCC
Q 013399 308 ------------GSLNTLVANFFKTYA-YWPWPTP-VMLQDPML------PAAGYPSETRSLMPIRLPC-SPHEYCHSNI 366 (444)
Q Consensus 308 ------------~sl~~LL~~FF~~Ys-~fdw~~p-V~l~~g~~------~~~~~~~~~~~~m~IitP~-~P~~N~a~nV 366 (444)
.++|.|+.+||++|+ .|+|..- +.+..|.. ..|-..-.+ ..++|++|. .+..+ -..
T Consensus 245 ~~~~~l~~~~~~~~lgvLf~dFf~~yG~~f~Y~~~~~si~~g~~~~~K~e~g~~~~~~p-~~LsiqdP~td~n~~--~~a 321 (482)
T COG5260 245 GLLSPLKYNKNIDNLGVLFDDFFELYGKSFNYSLVVLSINSGDFYLPKYEKGWLKPSKP-NSLSIQDPGTDRNND--ISA 321 (482)
T ss_pred cccchhhccccccccchHHHHHHHHhccccChhheEEEecCCceeeehhhcccccccCC-CcEeecCCCCCcccc--ccc
Confidence 368999999999999 7999864 44555511 122211112 678999999 44433 333
Q ss_pred ChhhHHHHHHHHHHHHHHHHhh
Q 013399 367 TRSTFYKIRTEFLRGHNTTRDL 388 (444)
Q Consensus 367 s~st~~~I~~Ef~rA~~il~~i 388 (444)
...+.+.|+.+|.+|.+++.+.
T Consensus 322 ~s~~ik~i~~~F~~aF~lls~~ 343 (482)
T COG5260 322 VSFNIKDIKAAFIRAFELLSNK 343 (482)
T ss_pred ccchHHHHHHHHHHHHHHHhhh
Confidence 4456899999999999999753
No 6
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair]
Probab=100.00 E-value=1e-32 Score=290.18 Aligned_cols=261 Identities=23% Similarity=0.361 Sum_probs=212.4
Q ss_pred hHHHHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCC
Q 013399 77 QMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLA-WVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSE 155 (444)
Q Consensus 77 ~~d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~-w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~ 155 (444)
..-..++++++++++ .+.||++|.+.|.++++++++.|++ | +.++|++||||.+|+++|+
T Consensus 58 ~~s~~l~~eI~~fv~--~l~pt~~e~~~R~~~~~~i~~~v~~~~-----------------~~a~v~~FGS~~tglyLP~ 118 (514)
T KOG1906|consen 58 LVSERLRNEILDFVQ--YLIPTPEEIEVRSELVEKIRDVVKQKW-----------------PDASVYVFGSVPTGLYLPD 118 (514)
T ss_pred hhHHHHHHHHHHHHH--HhcCCchHHHHHHHHHHHHHHHHHHhc-----------------ccceeEEeeeeeccccccc
Confidence 344567889999999 6999999999999999999999984 4 5899999999999999999
Q ss_pred CCceEEeecCCcccchHHHHHHHHHHHhc--CCCcceeEEeccCceeEEEEEE--CCeeeccccccccccCCCccccCCC
Q 013399 156 SDIDALCLGPEFATMAEDFFVVLHNMLKS--RPEVSEIHCVKDAKVPLMRFKF--DGILIDLPYACLHVLSVPENVDVLN 231 (444)
Q Consensus 156 SDID~v~v~p~~~~~~~~ff~~l~~~L~~--~~~v~~v~~I~~ArVPIIKf~~--~gI~vDLsf~~~~~~~~p~~~~~~~ 231 (444)
||||+++..+.... +++....+.-++.. ...-..+..|..|+||||||+. .+|.|||+|++.
T Consensus 119 sDIDl~v~~~~~~~-~e~~~~~~~l~~~~e~~~~~~~v~~v~karvpiik~~d~~s~i~vDISFn~~------------- 184 (514)
T KOG1906|consen 119 SDIDLVVLSKFLND-KEDRAVKLELALELEEDNSAFHVKVVQKARVPIIKFKDPVSNIHVDISFNQT------------- 184 (514)
T ss_pred cceEEEEecccccC-chhhHHHHHHHHhhhhccccceEEEeeeeeeeeEEeecCccceEEEeeeccc-------------
Confidence 99999999985543 34444444333333 3344668899999999999997 799999999984
Q ss_pred chhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHHHHHHHHHHhCCCC---
Q 013399 232 PFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKG--- 308 (444)
Q Consensus 232 ~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~alLva~~~Ql~P~~--- 308 (444)
|||+.++.|..++.+++.+|.++.++|+|..+|++++.++|+++||++++||+.++|++|..
T Consensus 185 ---------------~G~~aa~~i~~~~~~~p~~~~lvlvlk~fl~~r~ln~v~tGgisSyal~~Lv~~fl~l~~~~~s~ 249 (514)
T KOG1906|consen 185 ---------------NGVKAAKFIKDFLRDHPFLRSLVLVLKQFLYERRLNGVHTGGISSYALELLVLSFLQLHPRSKSG 249 (514)
T ss_pred ---------------CchhHHHHHHHHHhcCccchhHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHhhcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999999863
Q ss_pred ------CHHHHHHHHHHhhc-cCCCCC-ceeecCCCCC------CCCCC-CCCCCcceeeCCCCCCCcccCCCChhhHHH
Q 013399 309 ------SLNTLVANFFKTYA-YWPWPT-PVMLQDPMLP------AAGYP-SETRSLMPIRLPCSPHEYCHSNITRSTFYK 373 (444)
Q Consensus 309 ------sl~~LL~~FF~~Ys-~fdw~~-pV~l~~g~~~------~~~~~-~~~~~~m~IitP~~P~~N~a~nVs~st~~~ 373 (444)
.++.|+.+||++|| +|.+.. .|.+..++.. .+... ......+.|+||..|..+.++.- .++..
T Consensus 250 ~~~~~~~~~vll~~f~e~yG~~f~~~k~~i~~~~~g~~~~~~~~~~~~~~~~~~~~LsieDP~~P~ndigr~s--~~~~~ 327 (514)
T KOG1906|consen 250 RLAVLKNLGVLLIKFFELYGRNFGYDKLGISLSLGGEYVSKELTGFFNNSLERPGSLSIEDPVDPTNDIGRSS--FNFSQ 327 (514)
T ss_pred ccchhcccchHHHHHHHHhccccCchhhceeccCCcccccHHhhhhhcccccCCCccccCCCCCccccccccc--ccHHH
Confidence 47889999999999 777764 5665444321 11111 11125689999999977665422 45778
Q ss_pred HHHHHHHHHHHHHh
Q 013399 374 IRTEFLRGHNTTRD 387 (444)
Q Consensus 374 I~~Ef~rA~~il~~ 387 (444)
|+.+|..|+..+..
T Consensus 328 v~~~F~~af~~l~~ 341 (514)
T KOG1906|consen 328 VKGAFAYAFKVLTN 341 (514)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998854
No 7
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=6.4e-20 Score=198.68 Aligned_cols=263 Identities=20% Similarity=0.328 Sum_probs=198.8
Q ss_pred HhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCceEE
Q 013399 82 RSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDAL 161 (444)
Q Consensus 82 ~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDID~v 161 (444)
....+.+.++ ...+...+...|......++.++..- .+. ....+..|||..+|+....+|+|++
T Consensus 114 l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~---------~p~-----~~~~~~~~gs~~~~~~~~~~d~d~~ 177 (596)
T KOG2277|consen 114 LDPQLNELLE--SFKLPHSDVKTRKLILDKLRALASLL---------FPD-----SILSLYLFGSSDLGLGERSSDLDLC 177 (596)
T ss_pred hchhhhhhhh--ccCCCccccchHHHHHHHHHHHHHHh---------cCC-----CcceeeccCcccccccccccCccee
Confidence 3344444444 34456677777777788887777642 221 2233679999999999999999944
Q ss_pred eecCCc-cc----chHHHHHHHHHHHhcCCC--cceeEEeccCceeEEEEEE--CCeeeccccccccccCCCccccCCCc
Q 013399 162 CLGPEF-AT----MAEDFFVVLHNMLKSRPE--VSEIHCVKDAKVPLMRFKF--DGILIDLPYACLHVLSVPENVDVLNP 232 (444)
Q Consensus 162 ~v~p~~-~~----~~~~ff~~l~~~L~~~~~--v~~v~~I~~ArVPIIKf~~--~gI~vDLsf~~~~~~~~p~~~~~~~~ 232 (444)
+..... .. ....++..+.+.+....+ +..++.+..|+|||||+.+ .|+++|+++.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~A~vPiik~~~~~~~~~~d~s~~n~-------------- 243 (596)
T KOG2277|consen 178 VDFTSSFLSFEKIKGLEILKLLAKCLASLLEEGVREVQQILSARVPIIKFNDSGSGLECDLSVNNS-------------- 243 (596)
T ss_pred ecccccccccchhhhHHHHHHHHHHHHhccccccceeeeeeecCCCEEEecCCCCCCceeeeeccc--------------
Confidence 433222 11 123456677777777543 7888999999999999955 599999999864
Q ss_pred hhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccc-hHHHHHHHHHHHHhCCC----
Q 013399 233 FFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLG-GVHLAILVAHVCQNHPK---- 307 (444)
Q Consensus 233 ~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lg-g~s~alLva~~~Ql~P~---- 307 (444)
-|++++..+......+++|++|...||+||++++++++..|++. +|++++||++++|..+.
T Consensus 244 --------------~~~~nS~ll~~~~~~d~r~~~L~~~vk~wa~~~~~~d~~~g~~~s~ysl~lmvi~fLq~~~~~ilp 309 (596)
T KOG2277|consen 244 --------------DAILNSQLLRNYSEIDPRVRPLVLLVKHWAKEKGLNDAKPGGLNSSYSLTLMVIHFLQTLSPPILP 309 (596)
T ss_pred --------------hhhhhhHHHHHhHhcCCCcchHhHHHHHHHHhccCCCCCCCceeccccHHHHHHHHHHhcCCcCCC
Confidence 24566666666777778999999999999999999999999999 69999999999998732
Q ss_pred ---------------------------------------CCHHHHHHHHHHhhc-cCCCCCc-eeecCCCCCCCCCCCCC
Q 013399 308 ---------------------------------------GSLNTLVANFFKTYA-YWPWPTP-VMLQDPMLPAAGYPSET 346 (444)
Q Consensus 308 ---------------------------------------~sl~~LL~~FF~~Ys-~fdw~~p-V~l~~g~~~~~~~~~~~ 346 (444)
.+++.|+..||.||+ .|||.+- |.++.+...........
T Consensus 310 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~~yy~~~Fdf~~~~I~~r~~~~l~~~~~~~~ 389 (596)
T KOG2277|consen 310 PLSKLLPESDSNDKPVVKKKVLCSFLRVFQRNPSNSQNTGSLGELLLGFFSYYASLFDFRKNAISIRRGRALKRAKKIKS 389 (596)
T ss_pred chhhhchhcccccccchhhhhhhccccccccccccccccchHHHHHHHHHHHHhhhcccccceeeeeecccccccchhhh
Confidence 146799999999999 8999975 44665543221111112
Q ss_pred CCcceeeCCCCCCCcccCCCChhhHHHHHHHHHHHHHHHHhh
Q 013399 347 RSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDL 388 (444)
Q Consensus 347 ~~~m~IitP~~P~~N~a~nVs~st~~~I~~Ef~rA~~il~~i 388 (444)
+..+.|++|++...|.+..++......|+.+|+.+..++...
T Consensus 390 ~~~l~i~dp~~~~~n~~~~~~~~~~~~i~~~~~~~~~~~~~~ 431 (596)
T KOG2277|consen 390 KKFLCIEDPFEVSHNADAGVTLKVLLLIQDEFQESRRVFKDV 431 (596)
T ss_pred ccceeeccccccccCccccchHHHHHHHHHHHHHHHHHhhhh
Confidence 357889999999999999999999999999999999999865
No 8
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=99.85 E-value=9.9e-21 Score=162.95 Aligned_cols=111 Identities=34% Similarity=0.612 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHh
Q 013399 104 KRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLK 183 (444)
Q Consensus 104 ~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~ 183 (444)
.|++++++|++++++|. +++++++|||+++|+++|+||||+++..|........++..+.+.|+
T Consensus 1 ~r~~i~~~l~~~i~~~~----------------~~~~v~~fGS~~~g~~~~~SDiDl~i~~~~~~~~~~~~l~~l~~~l~ 64 (114)
T cd05402 1 KREEVLDRLQELIKEWF----------------PGAKLYPFGSYVTGLGLPGSDIDLCLLGPNHRVDREDFLRKLAKLLK 64 (114)
T ss_pred CHHHHHHHHHHHHHHHC----------------CCCEEEEecccccCCCCCCCCeeEEEEeCCCCccHHHHHHHHHHHHH
Confidence 48999999999999863 57899999999999999999999999999762224689999999999
Q ss_pred cCCCcceeEEeccCceeEEEEEEC--CeeeccccccccccCCCccccCCCchhccccchhhhhhcchhhhHHHHHHH
Q 013399 184 SRPEVSEIHCVKDAKVPLMRFKFD--GILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQL 258 (444)
Q Consensus 184 ~~~~v~~v~~I~~ArVPIIKf~~~--gI~vDLsf~~~~~~~~p~~~~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~ 258 (444)
+...+.++..|.+||||||||.+. |++|||+|++. +|++++++|..+
T Consensus 65 ~~~~~~~~~~i~~ArVPiik~~~~~~~i~~Dis~~~~----------------------------~g~~~s~li~~y 113 (114)
T cd05402 65 KSGEVVEVEPIINARVPIIKFVDKPTGIEVDISFNNL----------------------------NGIRNTKLLRAY 113 (114)
T ss_pred hCCCceeeEEeccCCCCEEEEEEcCCCeEEEEEcccc----------------------------hHHHHHHHHHHh
Confidence 987788899999999999999997 99999999973 789998887654
No 9
>TIGR03671 cca_archaeal CCA-adding enzyme.
Probab=99.67 E-value=3.5e-15 Score=154.45 Aligned_cols=238 Identities=18% Similarity=0.264 Sum_probs=160.8
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCC-CCCceEEeecCC
Q 013399 88 QLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGS-ESDIDALCLGPE 166 (444)
Q Consensus 88 ~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p-~SDID~v~v~p~ 166 (444)
+.|+ .+-||+||.++-+++.++|...++++.++. . ..++++.|||++-|.+++ +||||+.++.|.
T Consensus 4 ~vl~--~i~Ps~eE~~~~~~~~~~l~~~l~~~~~e~------~------~~~~v~~~GS~ArgT~L~G~sDIDIfi~f~~ 69 (408)
T TIGR03671 4 EVLE--RIKPTEEEREKLKKVADELIARLEEIIEEL------G------VDAEVVLVGSYARGTWLKGDRDIDIFILFPK 69 (408)
T ss_pred HHhh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHhc------C------CcceEEEEeeEecCCccCCCCceeEEEEeCC
Confidence 4444 477999999999999999999998876431 1 358999999999999999 899999999987
Q ss_pred cccchHHHHH---HHHHHHhcC-CCcceeEEeccCceeEEEEEECCeeeccccccccccCCCccccCCCc-hhccccchh
Q 013399 167 FATMAEDFFV---VLHNMLKSR-PEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNP-FFLRDLDET 241 (444)
Q Consensus 167 ~~~~~~~ff~---~l~~~L~~~-~~v~~v~~I~~ArVPIIKf~~~gI~vDLsf~~~~~~~~p~~~~~~~~-~~L~~ld~~ 241 (444)
... ++++-. .+...+.+. +.. ....|.=|-++..+.|++|||.=| +.+.+. .+...+|-.
T Consensus 70 ~~~-~e~l~~~gl~i~~~~~~~~~~~----~~~yaeHpYv~~~~~G~~VDiVPc----------y~v~~g~~~~taVDRt 134 (408)
T TIGR03671 70 DTS-REELEEYGLEIGHEVLKRGGNY----EERYAEHPYVSGEIEGFEVDVVPC----------YKVESGEEIISAVDRT 134 (408)
T ss_pred CCC-HHHHHHHHHHHHHHHHhhCCCH----hheeccCceEEEEEccEEEEEEee----------EEccCcCeeeccccCc
Confidence 655 334322 222223221 111 255788899999999999999633 111111 111122211
Q ss_pred hhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCC--CcCcccchHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 013399 242 SWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYG--NLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFK 319 (444)
Q Consensus 242 s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~--~~~G~Lgg~s~alLva~~~Ql~P~~sl~~LL~~FF~ 319 (444)
..-++++++.+.. .++..+|++|.|+|.-|+|+ -+.++++||..-||++++ -+-..++..+
T Consensus 135 -------p~H~~fv~~rl~~--~~~d~VRLlK~f~k~igvYGsE~~~~GFSGYl~ELLv~~y------G~F~~~l~~a-- 197 (408)
T TIGR03671 135 -------PFHTRYVLERLDG--KLRDDVRLLKQFLKGIGVYGSELKTRGFSGYLCELLVIHY------GSFENVLKAA-- 197 (408)
T ss_pred -------hHHHHHHHHhhhh--hHHHHHHHHHHHHHhCCccchhhccCCccHHHHHHHHHHh------CCHHHHHHHH--
Confidence 1124566555433 38899999999999999995 568899999999999995 2333333332
Q ss_pred hhccCCCCCceeecCCCCCCCCCCCCCCCcceeeCCCCCCCcccCCCChhhHHHHHHHHH
Q 013399 320 TYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFL 379 (444)
Q Consensus 320 ~Ys~fdw~~pV~l~~g~~~~~~~~~~~~~~m~IitP~~P~~N~a~nVs~st~~~I~~Ef~ 379 (444)
++ |..++.+....... . ...+++-|+||.+|.+|+|..+|..++..+...-+
T Consensus 198 --~~--wk~~~~id~~~~~~-~---~f~~PlvViDPvDp~RNVAaalS~~~~~~fv~aar 249 (408)
T TIGR03671 198 --SK--WKPGVVIDIEEHGT-K---KFDDPLVVIDPVDPKRNVAAALSLENLARFILAAR 249 (408)
T ss_pred --Hh--cCCCeEEecCcccc-c---cCCCCEEEeCCCCCcchHHHHcCHHHHHHHHHHHH
Confidence 34 44556662211111 1 11368999999999999999999988866664333
No 10
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional
Probab=99.64 E-value=2.9e-14 Score=149.60 Aligned_cols=237 Identities=20% Similarity=0.248 Sum_probs=158.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCC-CCCceEEeecC
Q 013399 87 VQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGS-ESDIDALCLGP 165 (444)
Q Consensus 87 ~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p-~SDID~v~v~p 165 (444)
.+.|+ .+.||+||.++-.++.++|...++++.++ .+ .+++++.+||++-|.|++ +||||+.++.|
T Consensus 4 ~evl~--~i~Ps~eE~~~l~~~~~~l~~~L~~~~~~----~~--------~~~~V~l~GS~ArgT~L~GdsDIDIFv~fp 69 (447)
T PRK13300 4 EEVLE--RIKPTEEEREKLKKVAEELIERLEEAIKE----LG--------LDAEVELVGSTARGTWLSGDRDIDIFVLFP 69 (447)
T ss_pred HHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHh----cC--------CceEEEEEeeecCCcccCCCCceeEEEEeC
Confidence 34455 47799999999999999999999886532 11 238999999999999999 78999999998
Q ss_pred CcccchHHHHH---HH-HHHHhcCCCcceeEEeccCceeEEEEEECCeeeccccccccccCCCccccCCCc-hhccccch
Q 013399 166 EFATMAEDFFV---VL-HNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNP-FFLRDLDE 240 (444)
Q Consensus 166 ~~~~~~~~ff~---~l-~~~L~~~~~v~~v~~I~~ArVPIIKf~~~gI~vDLsf~~~~~~~~p~~~~~~~~-~~L~~ld~ 240 (444)
.... ++++-. .+ .+.++....-..++ -|.=|-++..+.|++|||.=| +++.+. .+...+|-
T Consensus 70 ~~~~-~e~L~~~gl~i~~~~~~~~~~~~~~~---yaeHpyv~~~~~G~~VDiVPc----------y~v~~~~~~~saVDR 135 (447)
T PRK13300 70 KDTS-REELEEKGLEIGKEVAKELLGDYEER---YAEHPYVTGEIDGFEVDIVPC----------YKVESGEEIISAVDR 135 (447)
T ss_pred CCCC-HHHHHHHHHHHHHHHHHhhCCcceee---eccCceEEEEECCEEEEEEee----------EEccCcCcccccccC
Confidence 7765 233211 12 22233311112233 588899999999999999633 111111 11122221
Q ss_pred hhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCC--CcCcccchHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 013399 241 TSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYG--NLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFF 318 (444)
Q Consensus 241 ~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~--~~~G~Lgg~s~alLva~~~Ql~P~~sl~~LL~~FF 318 (444)
+ ..-++++++.+.. .++..+|++|.|+|.-|+|+ -+.++++||..-||++++ -+-..++..+
T Consensus 136 t-------p~H~~fv~~rl~~--~~~d~VRLlK~f~k~~gvYGsE~k~~GFSGYl~ELLv~~y------G~F~~~l~~a- 199 (447)
T PRK13300 136 T-------PFHTKYVKERLKG--KLEDEVRLLKQFLKGIGVYGSELKTRGFSGYLCELLIIHY------GSFENVLKAA- 199 (447)
T ss_pred c-------hHHHHHHHHhhhh--hHHHHHHHHHHHHHhCCccchhhccCCccHHHHHHHHHHh------CCHHHHHHHH-
Confidence 1 1225666655432 38899999999999999995 568999999999999995 2434444433
Q ss_pred HhhccCCCCCceeecCCCCCCCCCCCCCCCcceeeCCCCCCCcccCCCChhhHHHHH
Q 013399 319 KTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIR 375 (444)
Q Consensus 319 ~~Ys~fdw~~pV~l~~g~~~~~~~~~~~~~~m~IitP~~P~~N~a~nVs~st~~~I~ 375 (444)
++|.-+..|.+.+.+. .. ...+++-|+||.+|.+|+|.++|..++..+.
T Consensus 200 ---~~w~~~~~I~~~~~~~--~~---~f~~PlvViDPvDp~RNVAaa~S~~~~~~fv 248 (447)
T PRK13300 200 ---SKWKPPVKIDLEKHGK--EY---KFDDPLVVIDPVDPNRNVAAALSLENLATFI 248 (447)
T ss_pred ---HhCCCCceEeccccCc--cc---cCCCCEEEeCCCCCcchHHHHcCHHHHHHHH
Confidence 3453323333322111 11 1236899999999999999999988875544
No 11
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.1e-10 Score=120.34 Aligned_cols=233 Identities=18% Similarity=0.253 Sum_probs=154.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCC-CCCceEEee
Q 013399 85 SLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGS-ESDIDALCL 163 (444)
Q Consensus 85 ~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p-~SDID~v~v 163 (444)
.|.+.|+ -+-||+||.++=+++.++|...+++-. .+.+ .++.+...||++=|.|++ +.|||+-|.
T Consensus 6 ~l~evl~--~i~P~~eE~~~~~~~~e~l~~~~~~~~----~e~~--------~~aev~lVGS~AkgTwL~gd~DIDvFi~ 71 (443)
T COG1746 6 VLEEVLK--RIKPTEEERKKLKEVAEELRERINEII----EELG--------IDAEVVLVGSYAKGTWLRGDHDIDVFIA 71 (443)
T ss_pred HHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHH----HhcC--------CcceEEEEeecccCcccCCCcceeEEEE
Confidence 3555665 467999999988888888887777643 3334 468999999999999999 799999999
Q ss_pred cCCcccchHHH----HHHHHHHHhcCCCcceeEEeccCceeEEEEEECCeeeccccccccccCCCccccCCCch-hcccc
Q 013399 164 GPEFATMAEDF----FVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPF-FLRDL 238 (444)
Q Consensus 164 ~p~~~~~~~~f----f~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~gI~vDLsf~~~~~~~~p~~~~~~~~~-~L~~l 238 (444)
.|.... ++.. .......|.+ .. -.+.-|-=|-+.-.++|++||+.=|-. +-+.+ +...+
T Consensus 72 Fp~d~~-~eel~~~GL~ig~~~l~~-~~----~~~~YAeHPYV~g~v~G~eVDvVPCy~----------v~~~~~~~sAV 135 (443)
T COG1746 72 FPKDTS-EEELEEKGLEIGREVLKR-GN----YEERYAEHPYVTGEVDGYEVDVVPCYK----------VEDGEKIISAV 135 (443)
T ss_pred CCCCCC-HHHHHHHHHHHHHHHhcC-Cc----hhhhhccCCeeEEEEccEEEEEEeccc----------ccCcccccccc
Confidence 998765 2222 2223344443 11 136688889999999999999974421 11110 11122
Q ss_pred chhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCC--cCcccchHHHHHHHHHHHHhCCCCCHHHHHHH
Q 013399 239 DETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGN--LHGFLGGVHLAILVAHVCQNHPKGSLNTLVAN 316 (444)
Q Consensus 239 d~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~--~~G~Lgg~s~alLva~~~Ql~P~~sl~~LL~~ 316 (444)
|-+- --+.++..-+.... +.=+|++|++.|.=|+|++ +.+++|||---||+++|= .
T Consensus 136 DRTp-------lHt~yv~e~L~~~~--~deVrLLK~FlK~iGvYGaE~rt~GFSGYL~ELLII~yG-------------s 193 (443)
T COG1746 136 DRTP-------LHTRYVEEHLKGRQ--KDEVRLLKQFLKGIGVYGAELRTQGFSGYLCELLIIHYG-------------S 193 (443)
T ss_pred cCcc-------hhHHHHHHHhcccc--hhHHHHHHHHHhccCccceeeeeccchHHHHHHHHhhhc-------------c
Confidence 2111 11345544443322 2458999999999999985 589999999999999981 2
Q ss_pred HHHhhccC-CCCCceeecCCCCCCCCCCCCCCCcceeeCCCCCCCcccCCCChhhHH
Q 013399 317 FFKTYAYW-PWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFY 372 (444)
Q Consensus 317 FF~~Ys~f-dw~~pV~l~~g~~~~~~~~~~~~~~m~IitP~~P~~N~a~nVs~st~~ 372 (444)
|=+.--.. +|..++.|..-+.......+ .+|-|+||.+|..|+|.+||..++.
T Consensus 194 Fe~vl~~a~~wrp~~~ID~~~~~~e~f~d---~PliVvDPVDP~RNVAAalSl~~la 247 (443)
T COG1746 194 FENVLKAASRWRPGKIIDLEGHKRERFED---EPLIVVDPVDPKRNVAAALSLENLA 247 (443)
T ss_pred HHHHHHHHhccCCCeEEeccchhhhccCC---CCeEecCCCCCccchhhhcCHHHHH
Confidence 22222222 28777776432221111112 3899999999999999999987764
No 12
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].
Probab=99.06 E-value=1.1e-08 Score=117.51 Aligned_cols=258 Identities=15% Similarity=0.147 Sum_probs=172.4
Q ss_pred ccccCCCCC---CCCceEEeecCCcccc------------hHHHHHHHHHHH--hcCCCcceeEE---eccCceeEEEEE
Q 013399 146 SYGLGVHGS---ESDIDALCLGPEFATM------------AEDFFVVLHNML--KSRPEVSEIHC---VKDAKVPLMRFK 205 (444)
Q Consensus 146 S~~lGv~~p---~SDID~v~v~p~~~~~------------~~~ff~~l~~~L--~~~~~v~~v~~---I~~ArVPIIKf~ 205 (444)
||.++...+ +-.||+.+..|...-. |.-|...++..| ++.....++.. -.+.+=||+.+.
T Consensus 1 S~~l~t~~k~~~~~~VDl~v~mP~~~fq~KDyln~RY~~KRA~YLa~iA~~L~~~~~~~~~~v~~~~~~gd~~kPil~l~ 80 (972)
T PF03813_consen 1 SYALKTMIKSKPNLTVDLAVEMPKSLFQEKDYLNYRYFHKRALYLAYIAAHLQKKKSKLFVDVSFEYLNGDPLKPILVLR 80 (972)
T ss_pred CcccccccccCCCCeeEEEEeCChhhcCchhhccchHHHHHHHHHHHHHHHHhhhccccceeEEEEeCCCCCCCCeEEEE
Confidence 666666554 6789999999976432 233345567778 33333333332 347788999887
Q ss_pred EC-----C------eeeccccccccc----c-CCC------------------ccccCCCchhccccchhhhhhcchhhh
Q 013399 206 FD-----G------ILIDLPYACLHV----L-SVP------------------ENVDVLNPFFLRDLDETSWKSLSGVRA 251 (444)
Q Consensus 206 ~~-----g------I~vDLsf~~~~~----~-~~p------------------~~~~~~~~~~L~~ld~~s~~slnG~R~ 251 (444)
-. + +.|-|..+.... . -.| ..-+..|..+|.++-. ...
T Consensus 81 p~~~~~~~~~~~~~~~iRi~~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~~~~~pTP~YNssIL~D~~~--------~~~ 152 (972)
T PF03813_consen 81 PKGKKDSDDFSKTKFRIRIIPSIPSDTFPLSRLAPSRNNVRPSWFDEEDSSSLPPTPHYNSSILEDMLM--------EEH 152 (972)
T ss_pred ECCccccccccCCcEEEEEEecCCcccCCHHhcCCCCCccCcCcccccccCCCCCCCcchHHHHHHHhH--------HHH
Confidence 42 2 334443332100 0 000 1123344445443321 122
Q ss_pred HHHHHHHcCCccchhHHHHHHHHHHHHhccCCCc-CcccchHHHHHHHHHHHHh---------CCCCCHHHHHHHHHHhh
Q 013399 252 NKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNL-HGFLGGVHLAILVAHVCQN---------HPKGSLNTLVANFFKTY 321 (444)
Q Consensus 252 ~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~-~G~Lgg~s~alLva~~~Ql---------~P~~sl~~LL~~FF~~Y 321 (444)
.+++.+.....+.|+.+++++|.||++||+.+.. .|++||+-|++|+++.+|. .+.+|.-+++..+.++.
T Consensus 153 l~~l~~~~~~~p~f~dA~iLlkvWl~QRg~~~~~~~~Gf~~f~~s~lla~Ll~~g~~~~~~~l~~~mSsyQlFr~~l~fL 232 (972)
T PF03813_consen 153 LKYLHEASKSSPAFRDACILLKVWLRQRGFGSGISQGGFGGFEWSMLLAYLLQGGGRNGKKKLSKSMSSYQLFRAVLQFL 232 (972)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCcccCCCCcchHHHHHHHHHHHcCCCccCCcccCCCCCHHHHHHHHHHHH
Confidence 3455566667899999999999999999999865 6899999999999999987 25578899999999999
Q ss_pred ccCCC-CCceeecCCCCC-CCCCCCCCCCcceeeCCCCCCCcccCCCChhhHHHHHHHHHHHHHHHHhhcCCCCCccccc
Q 013399 322 AYWPW-PTPVMLQDPMLP-AAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLF 399 (444)
Q Consensus 322 s~fdw-~~pV~l~~g~~~-~~~~~~~~~~~m~IitP~~P~~N~a~nVs~st~~~I~~Ef~rA~~il~~i~~~~~~W~~L~ 399 (444)
++.|| .+|+.+...... .........+.....||-. ..|.+..+|.++++.++.|-+++.++|++. .....+.+|
T Consensus 233 A~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~vf~D~sg-~~Nl~~~ms~~s~~~L~~eA~~tl~lL~~~--~~d~F~~lF 309 (972)
T PF03813_consen 233 ATTDLSKKPLFFKSSSDSTESLEEFHSAFDPVFVDPSG-GLNLLAKMSPSSYEELQHEAKLTLELLDDS--SDDGFDSLF 309 (972)
T ss_pred hccccccCceEEecCCCccchhhhhhccCCeEEEeCCC-CEEEEEcCCHHHHHHHHHHHHHHHHHhccc--cccchhhhh
Confidence 99999 578888543210 0000011124555667755 599999999999999999999999998753 234577766
Q ss_pred -Cc-CCCchhhcceeEE
Q 013399 400 -EP-FPYSKKYARFVRV 414 (444)
Q Consensus 400 -~~-~~ff~~y~~yl~i 414 (444)
.+ .++..+|.+++.|
T Consensus 310 l~~~~~~~~~fD~~~~i 326 (972)
T PF03813_consen 310 LTKVDPPALRFDHVLRI 326 (972)
T ss_pred cccCCcccccCCEEEEE
Confidence 44 4678899999999
No 13
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins.
Probab=98.42 E-value=2.1e-05 Score=77.04 Aligned_cols=215 Identities=20% Similarity=0.209 Sum_probs=152.4
Q ss_pred EEEEecccccCCCCCC-CCceEEeecCCcccchHHHHH----HHHHHHhcCCCcceeEEeccCceeEEEEEEC----Cee
Q 013399 140 TILTYGSYGLGVHGSE-SDIDALCLGPEFATMAEDFFV----VLHNMLKSRPEVSEIHCVKDAKVPLMRFKFD----GIL 210 (444)
Q Consensus 140 ~l~~FGS~~lGv~~p~-SDID~v~v~p~~~~~~~~ff~----~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~----gI~ 210 (444)
.+.-.||+.-|+.+.| -+.|+|+++..-.| .+..+ .+.+-|++...-.....+..+.+|.++..+. -..
T Consensus 4 gV~rVG~~aKG~ll~Gd~~~~lVv~c~~~PT--~~ll~~v~~~l~e~l~~~~~~e~~~~~~~~~~~~~~~~i~ltSp~~r 81 (246)
T smart00572 4 GVMRVGSFAKGTLLKGDNVAELVLLCKEKPT--SELVARLARKLPEQLKAVTEDEALIIVTSTKEPTMEVGILITSPLAR 81 (246)
T ss_pred ceEEeeeeccCceecCCCceeEEEEecCCCc--HHHHHHHHHHHHHHHhhcCcccceeeeeccCCCceeEEEEEeccccc
Confidence 4677899999999986 67899999877666 23333 4455555532212223466777788887652 233
Q ss_pred eccccccccccCCCccccCCCchhccccc-hhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCccc
Q 013399 211 IDLPYACLHVLSVPENVDVLNPFFLRDLD-ETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFL 289 (444)
Q Consensus 211 vDLsf~~~~~~~~p~~~~~~~~~~L~~ld-~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~L 289 (444)
.+.... ..|++....++.. -+| ..|+.+|-.+|-+....+.......|+.++|++|-|.++...-+ -|
T Consensus 82 ~~~~~~-----~~~~~~~~~~p~~--~ld~~~cl~aLAalRhakWFq~~a~~l~s~~iviRilKd~~~R~~~~~----pL 150 (246)
T smart00572 82 VELLIT-----TVPENLRKLDPED--HLDRKKCLSALASLRHAKWFQARASGLQSCVIVIRVLRDLCNRVPTWQ----PL 150 (246)
T ss_pred cccccc-----ccCcccccCCccc--cCCHHHHHHHHHHHHHhHHHHHhccCCcchhhHHHHHHHHHHhccccc----cc
Confidence 344433 2344444433332 122 34788888999999998888888899999999999999876544 49
Q ss_pred chHHHHHHHHHHHHhCC-CCCHHHHHHHHHHhhccCCCCCceeecCCCCCCCCCCCCCCCcceeeCCCCC-CCcccCCCC
Q 013399 290 GGVHLAILVAHVCQNHP-KGSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSP-HEYCHSNIT 367 (444)
Q Consensus 290 gg~s~alLva~~~Ql~P-~~sl~~LL~~FF~~Ys~fdw~~pV~l~~g~~~~~~~~~~~~~~m~IitP~~P-~~N~a~nVs 367 (444)
.|+.+-+++.+.+-... ..++++-+.+||++-++=.+ +.++ --|.||+++ ..|++...|
T Consensus 151 ~~w~iELl~~~~i~~~~~~l~~~~a~RR~fe~lAsG~l-----~p~~--------------~gI~DPce~~~~nv~~~lT 211 (246)
T smart00572 151 SGWPLELLVEKAIGSARQPLGLGDAFRRVFECLASGIL-----LPGS--------------PGLTDPCEKDNTDALTALT 211 (246)
T ss_pred ccccHHHHHHHHhccCCCCCCHHHHHHHHHHHHHhccC-----cCCC--------------CCCcCCCCCCcccHHHhcC
Confidence 99999999999886332 26899999999999983111 2111 138899997 788999999
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 013399 368 RSTFYKIRTEFLRGHNTTR 386 (444)
Q Consensus 368 ~st~~~I~~Ef~rA~~il~ 386 (444)
....+.|...=+.|.+++.
T Consensus 212 ~qqrd~It~sAQ~alRl~A 230 (246)
T smart00572 212 LQQREDVTASAQTALRLLA 230 (246)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888873
No 14
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown]
Probab=98.29 E-value=1e-05 Score=90.96 Aligned_cols=283 Identities=17% Similarity=0.134 Sum_probs=174.1
Q ss_pred CeEEE-EecccccCC-CCCCCCceEEeecCCcccc------------hHHHHHHHHHHHhcCCCcceeEEe---ccCcee
Q 013399 138 HATIL-TYGSYGLGV-HGSESDIDALCLGPEFATM------------AEDFFVVLHNMLKSRPEVSEIHCV---KDAKVP 200 (444)
Q Consensus 138 ~~~l~-~FGS~~lGv-~~p~SDID~v~v~p~~~~~------------~~~ff~~l~~~L~~~~~v~~v~~I---~~ArVP 200 (444)
.+++. ..||+.+|. .-|++-+|+++..|...-. |.-++..+...|-..+....++.. -+-.-|
T Consensus 147 p~~v~~vv~sal~~~~~~P~i~vDvll~mP~e~~~~kd~ln~Ryf~kra~yla~~~~hl~e~l~~~~~~f~~~n~d~~~p 226 (1121)
T KOG2054|consen 147 PAQVTKVVGSALLGTCLRPDISVDVLLTMPREILQQKDGLNQRYFRKRALYLAYLAHHLLEDLLFGSLEFSYTNGDHLKP 226 (1121)
T ss_pred ccccceeeeecccCcccCCcchhhhhhhhhHHhhcCcccccccccchHHHHHHHHHHHHHhccccceeeecccCCccccc
Confidence 45565 556666554 4577999999998864321 123334444444443422222222 134567
Q ss_pred EEEEEECCeeeccccccccccCCCc---------------------------cccCCCchhccccchhhhhhcchhhhHH
Q 013399 201 LMRFKFDGILIDLPYACLHVLSVPE---------------------------NVDVLNPFFLRDLDETSWKSLSGVRANK 253 (444)
Q Consensus 201 IIKf~~~gI~vDLsf~~~~~~~~p~---------------------------~~~~~~~~~L~~ld~~s~~slnG~R~~~ 253 (444)
|+...-.|-..|+.=.+.+.--+|- .-+..|..+|...- ---..+
T Consensus 227 il~i~~~~~~~~~~~~~~~~~li~~~~~~f~~~kllp~~~~ir~~~e~~e~ppTP~yN~svL~~~~--------le~~~q 298 (1121)
T KOG2054|consen 227 ILLIRPRGKDERLVTVRPPDFLIPCRLLPFKNNKLLPWYNGIRPAGEGSEEPPTPRYNTSVLEDQV--------LEEYLQ 298 (1121)
T ss_pred hhhccccCCccccccccCccccccccccccccccccchhcccCccccCCCCCCCCccchhHHHHHH--------HHHHHH
Confidence 7777654433333222211001111 11233333332211 111234
Q ss_pred HHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHHHHHHHHHH---hCCCCCHHHHHHHHHHhhccCCCCC-c
Q 013399 254 CILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQ---NHPKGSLNTLVANFFKTYAYWPWPT-P 329 (444)
Q Consensus 254 ~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~alLva~~~Q---l~P~~sl~~LL~~FF~~Ys~fdw~~-p 329 (444)
++.+.....+.|+.++.+.|.|+++|.. +-..|++||+-|++++++... ++-+.|..+++..-+++.+.|||.. .
T Consensus 299 ~L~K~~s~~~~f~da~~Llk~WlrqRs~-~~~~~gfg~f~~s~lvv~L~s~~ki~~~~S~yqvfR~vl~flat~dlt~~~ 377 (1121)
T KOG2054|consen 299 LLSKTLSSAKGFKDALALLKVWLRQRSL-DIGQGGFGGFLLSALVVYLVSTRKIHTTLSAYQVFRSVLQFLATTDLTVNG 377 (1121)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhh-hcccCcchHHHHHHHHHHHHhcCchhhcchHHHHHHHHHHHHhhhhhhccc
Confidence 5556667788999999999999999932 224789999999999998865 3566789999999999999999986 6
Q ss_pred eeecCCCCCCC--CCCCCCCCcceeeCCCCCCCcccCCCChhhHHHHHHHHHHHHHHHHhhcCCCCCccccc-CcCCCch
Q 013399 330 VMLQDPMLPAA--GYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLF-EPFPYSK 406 (444)
Q Consensus 330 V~l~~g~~~~~--~~~~~~~~~m~IitP~~P~~N~a~nVs~st~~~I~~Ef~rA~~il~~i~~~~~~W~~L~-~~~~ff~ 406 (444)
|.+.+..+... ..-.+ .+....+| ..-..|...|++.++.+.+++|.+-+..+|.+... ...+.+| .+.+.|.
T Consensus 378 ~~l~~~~~s~~~~~~f~e-~~~~~f~D-~s~~~NLc~~mt~s~y~~~q~ea~ltl~lL~~~~~--~~F~~IFmtkip~~~ 453 (1121)
T KOG2054|consen 378 ISLVPSSPSLPALADFHE-GQLVTFID-SSGHLNLCANMTASTYEQVQEEARLTLMLLDSRAD--DGFSLIFMTKIPVFR 453 (1121)
T ss_pred eEeccCCCCchhhhhhhh-cceeeEec-cCCcchhhhhccHHHHHHHHHHHHHHHHHHhhhhh--cCcceeeeecCCchh
Confidence 77654321111 01111 12333333 23358889999999999999999999999987643 3466665 7789999
Q ss_pred hhcceeEEEEEeCChhcccceeeeehh
Q 013399 407 KYARFVRVYLSASNQDDLGDWVGWVKS 433 (444)
Q Consensus 407 ~y~~yl~i~v~a~~~~~~~~~~G~vES 433 (444)
.|.|-+.+.--..-+.....-.||+|.
T Consensus 454 ~yDh~l~l~~~~~l~~~~~~~~~~~~~ 480 (1121)
T KOG2054|consen 454 AYDHVLHLSPLSRLQAAEHLLSGFCEK 480 (1121)
T ss_pred hhheeeeccccchhhhHHhhcccchhh
Confidence 999988877654445555555555553
No 15
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1. The signatures that define this group of sequences often occur towards the C terminus after the PAP/25A core domain IPR001201 from INTERPRO.; PDB: 2B4V_A 2B56_A 2B51_A 4EP7_B 2NOM_B 2Q0G_B 2Q0D_B 2Q0C_A 2Q0F_A 2Q0E_A ....
Probab=98.08 E-value=2.1e-06 Score=65.75 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHhhc-cCCCCCc-eeecCCCC-----CCCC-CCCCCCCcceeeCCCCCC
Q 013399 309 SLNTLVANFFKTYA-YWPWPTP-VMLQDPML-----PAAG-YPSETRSLMPIRLPCSPH 359 (444)
Q Consensus 309 sl~~LL~~FF~~Ys-~fdw~~p-V~l~~g~~-----~~~~-~~~~~~~~m~IitP~~P~ 359 (444)
|+|+||.+||+||| .|||.+- |+++.|+. ..|. ........|+|+||++|.
T Consensus 1 slg~Ll~~Ff~~Y~~~Fd~~~~~Isi~~g~~~~k~~~~~~~~~~~~~~~l~IeDP~~~~ 59 (60)
T PF03828_consen 1 SLGELLLGFFEYYGRKFDYENNVISIRNGGYFPKEEKNWSKSRNQRKKRLCIEDPFDPS 59 (60)
T ss_dssp -HHHHHHHHHHHHHHTS-TTTEEEESSSSSEEEHHHHTGCHCCCCECSSSEBBESSSTT
T ss_pred CHHHHHHHHHHHhCCcCCCCceEEEecCCceEEhhhccccccccCCCCeEEEECCCCCC
Confidence 68999999999999 9999984 55777652 2232 111224789999999985
No 16
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=97.93 E-value=6.7e-05 Score=66.87 Aligned_cols=76 Identities=26% Similarity=0.318 Sum_probs=55.1
Q ss_pred CeEEEEecccccCCCCC-CCCceEEeecCCccc----chHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEEC--Cee
Q 013399 138 HATILTYGSYGLGVHGS-ESDIDALCLGPEFAT----MAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFD--GIL 210 (444)
Q Consensus 138 ~~~l~~FGS~~lGv~~p-~SDID~v~v~p~~~~----~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~--gI~ 210 (444)
...++.||||+.|..++ .||||++++.+.... ...++...+.+.|.+...- . ..+ ...-|-|.+++. |++
T Consensus 27 ~~~~~~~GS~a~~T~i~~~sDiD~~v~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~-~~~-~~~~~~v~v~~~~~~~~ 103 (143)
T cd05400 27 VAEVFLQGSYARGTALRGDSDIDLVVVLPDDTSFAEYGPAELLDELGEALKEYYGA-N-EEV-KAQHRSVTVKFKGQGFH 103 (143)
T ss_pred ccEEEEEcceeCCCCCCCCCceeEEEEEcCcccccccCHHHHHHHHHHHHHHhcCc-c-ccc-ccCceEEEEEEcCCCeE
Confidence 57999999999999988 899999999775432 2456777788888775321 1 112 344467777775 899
Q ss_pred eccccc
Q 013399 211 IDLPYA 216 (444)
Q Consensus 211 vDLsf~ 216 (444)
+||.-+
T Consensus 104 vDvvP~ 109 (143)
T cd05400 104 VDVVPA 109 (143)
T ss_pred EEEEEE
Confidence 999654
No 17
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins. This superfamily includes the NT domains of DNA polymerase beta and other family X DNA polymerases, as well as the NT domains of Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly (A) polymerases, terminal uridylyl transferases, and Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. The Escherichia coli CCA-adding enzyme belongs to this superfamily but is not included as this enzyme lacks the N-terminal helix conserved in the remainder of the superfamily. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate coordinate two divalent metal cations that are essential for catalysis. These divalent metal ions are
Probab=97.85 E-value=2.5e-05 Score=58.05 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=24.4
Q ss_pred CeEEEEecccccCCCCCCCCceEEee
Q 013399 138 HATILTYGSYGLGVHGSESDIDALCL 163 (444)
Q Consensus 138 ~~~l~~FGS~~lGv~~p~SDID~v~v 163 (444)
..+++.|||++.|.+.++||||++|+
T Consensus 17 ~~~v~lfGS~arg~~~~~SDIDi~v~ 42 (49)
T cd05397 17 GYEIVVYGSLVRGLLKKSSDIDLACV 42 (49)
T ss_pred CcEEEEECCcCCCCCCCCCCEEEEEE
Confidence 57899999999999999999999887
No 18
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core. It is predominantly found in Archaeal tRNA nucleotidyltransferases, following the catalytic nucleotidyltransferase domain []. ; GO: 0004810 tRNA adenylyltransferase activity, 0016437 tRNA cytidylyltransferase activity; PDB: 3OUY_B 2ZHB_A 2ZH1_A 2ZH2_A 1UET_A 2ZH7_A 1R8B_A 2DR5_A 1TFW_C 3OVA_A ....
Probab=97.84 E-value=2.7e-05 Score=67.63 Aligned_cols=91 Identities=20% Similarity=0.313 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhccCCC--cCcccchHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccCCCCCceeecCCCCCCCCCCCCC
Q 013399 269 LRCIKLWAKRRGVYGN--LHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSET 346 (444)
Q Consensus 269 lr~IK~WAk~RgI~~~--~~G~Lgg~s~alLva~~~Ql~P~~sl~~LL~~FF~~Ys~fdw~~pV~l~~g~~~~~~~~~~~ 346 (444)
+|++|+++|.-|+|++ +.++++||..-||+++|= + +....+.-+ +|..++.|....... .....
T Consensus 3 VrLLK~FlK~igvYGse~~~~GFSGYL~ELLii~yG------s----F~~~l~~a~--~W~~~~~Id~~~~~~--~~~~f 68 (114)
T PF09249_consen 3 VRLLKQFLKGIGVYGSELKTRGFSGYLCELLIIHYG------S----FENVLEAAA--KWKPPVVIDLEDHGE--PSKKF 68 (114)
T ss_dssp HHHHHHHHHHTT-B-SSTTT-SB-HHHHHHHHHHHS------S----HHHHHHHHT--T--TTEEEETT-TTE----EEE
T ss_pred hHHHHHHHhcCCCcchhhhcCcchHHHHHHHHHHHC------C----HHHHHHHHH--hcCCCeEEccCccch--hhhhc
Confidence 6899999999999985 588999999999999982 2 233333334 677777774321111 01112
Q ss_pred CCcceeeCCCCCCCcccCCCChhhHHH
Q 013399 347 RSLMPIRLPCSPHEYCHSNITRSTFYK 373 (444)
Q Consensus 347 ~~~m~IitP~~P~~N~a~nVs~st~~~ 373 (444)
.+++.|+||.+|.+|+|.++|..++..
T Consensus 69 ~~PlvviDPvDp~RNVAAalS~~~~~~ 95 (114)
T PF09249_consen 69 DDPLVVIDPVDPNRNVAAALSLENLAE 95 (114)
T ss_dssp -SS-EEEETTEEEEETTTTS-HHHHHH
T ss_pred CCCeEEcCCCCCCchHhHhcCHHHHHH
Confidence 368999999999999999999887743
No 19
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis. Sequence and secondary structure comparisons of regions surrounding these aspartates with sequences of other polymerases revealed a significant homology to the palm structure of DNA polymerase beta, terminal deoxynucleotidyltransferase and DNA polymerase IV of Saccharomyces cerevisiae, all members of the family X of polymerases. This homology extends as far as cca: tRNA nucleotidyltransferase and streptomycin adenylyltransferase, an antibiotic resistance factor [, ]. Proteins containing this domain include kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTase inactivates antibiotics by catalysing the addition of a nucleotidyl group onto the drug. In experiments, Mn2+ strongly stimulated this reaction due to a 50-fold lower Ki for 8-azido-ATP in the presence of Mn2+. Mutations of the highly conserved Asp residues 113, 115, and 167, critical for metal binding in the catalytic domain of bovine poly(A) polymerase, led to a strong reduction of cross-linking efficiency, and Mn2+ no longer stimulated the reaction. Mutations in the region of the "helical turn motif" (a domain binding the triphosphate moiety of the nucleotide) and in the suspected nucleotide-binding helix of bovine poly(A) polymerase impaired ATP binding and catalysis. The results indicate that ATP is bound in part by the helical turn motif and in part by a region that may be a structural analogue of the fingers domain found in many polymerases.; GO: 0016779 nucleotidyltransferase activity; PDB: 4EBK_B 4EBJ_A 1KNY_A 2B4V_A 2B56_A 2B51_A 1NO5_B 1Q79_A 1Q78_A 1F5A_A ....
Probab=97.79 E-value=3.2e-05 Score=63.35 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=29.4
Q ss_pred CeEEEEecccccCCCCCCCCceEEeecCCccc
Q 013399 138 HATILTYGSYGLGVHGSESDIDALCLGPEFAT 169 (444)
Q Consensus 138 ~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~ 169 (444)
...++.|||++.|.+.|+||||++++.+....
T Consensus 14 ~~~v~lfGS~a~g~~~~~SDIDl~i~~~~~~~ 45 (93)
T PF01909_consen 14 VAEVYLFGSYARGDATPDSDIDLLIILDEPED 45 (93)
T ss_dssp TEEEEEEHHHHHTSSCTTSCEEEEEEESSTSC
T ss_pred CCEEEEECCcccCcCCCCCCEEEEEEeCCccc
Confidence 57999999999999999999999999988753
No 20
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=97.33 E-value=0.00037 Score=56.55 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=28.8
Q ss_pred CeEEEEecccccCCCCCCCCceEEeecCCccc
Q 013399 138 HATILTYGSYGLGVHGSESDIDALCLGPEFAT 169 (444)
Q Consensus 138 ~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~ 169 (444)
-..++.|||++.|-+.++||||++++.+....
T Consensus 18 i~~i~LfGS~arg~~~~~SDiDl~vi~~~~~~ 49 (93)
T cd05403 18 VEKVYLFGSYARGDARPDSDIDLLVIFDDPLD 49 (93)
T ss_pred ccEEEEEeeeecCCCCCCCCeeEEEEeCCCCC
Confidence 46999999999999999999999999887654
No 21
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].
Probab=97.25 E-value=0.0027 Score=73.73 Aligned_cols=150 Identities=21% Similarity=0.306 Sum_probs=106.8
Q ss_pred hhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHHHHHHHHHH-hCC---CCCHHHHHHHHHHhhcc
Q 013399 248 GVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQ-NHP---KGSLNTLVANFFKTYAY 323 (444)
Q Consensus 248 G~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~alLva~~~Q-l~P---~~sl~~LL~~FF~~Ys~ 323 (444)
..+-+..|..+...++.|.+++|++|+|...+-+ .|.+.--.+-||||++.- -.| +.|+..=+.+|.++-++
T Consensus 668 ~p~h~~~i~~l~~~~p~fs~tvRL~KrW~~shlL----s~~i~~E~vELlva~vfl~~~p~~~P~S~~~GFlRfL~lLs~ 743 (972)
T PF03813_consen 668 LPKHTSAIHGLHTRFPSFSPTVRLAKRWLSSHLL----SGHISEEAVELLVASVFLSPAPWSPPSSPQTGFLRFLHLLST 743 (972)
T ss_pred hHHHHHHHHHHHhhCCchhHHHHHHHHHHHhccC----cccCCHHHHHHHHHHHhcCCCCCCCCCCHhHHHHHHHHHHHh
Confidence 3444566666767789999999999999999988 457899999999999863 333 46677778888888899
Q ss_pred CCCC-CceeecCCC-CC------------CCCCCC--CCCCcceeeCCCCCCCcc--cCCCChhhHHHHHHHHHHHHHHH
Q 013399 324 WPWP-TPVMLQDPM-LP------------AAGYPS--ETRSLMPIRLPCSPHEYC--HSNITRSTFYKIRTEFLRGHNTT 385 (444)
Q Consensus 324 fdw~-~pV~l~~g~-~~------------~~~~~~--~~~~~m~IitP~~P~~N~--a~nVs~st~~~I~~Ef~rA~~il 385 (444)
|||. +|+++.-.+ .. .++..+ .....|.|-||.+|.... ...-+..-+++|+.-=+.+.+++
T Consensus 744 ~dW~~~PLiVd~~~~l~~~~~~~i~~~f~~~R~~dp~~~~p~~~IaT~~D~~g~~wT~~~Ps~~v~~Rl~~LAk~sl~~l 823 (972)
T PF03813_consen 744 WDWREEPLIVDFNNELTEEDRAEIETNFDAWRKIDPAMNLPAMFIATPYDPEGSLWTRNGPSKVVAKRLTALAKASLKLL 823 (972)
T ss_pred CCCCcCCEEEECCCCCCHHHHHHHHHHHHHhhccCccccCCcEEEEeCCCCCCCEeECCCCCHHHHHHHHHHHHHHHHHH
Confidence 9998 588874321 10 122211 124679999999987552 23445555778877777788888
Q ss_pred HhhcCCCCCcccccCc
Q 013399 386 RDLMRPDFDWHFLFEP 401 (444)
Q Consensus 386 ~~i~~~~~~W~~L~~~ 401 (444)
+.-..+..+|..||.+
T Consensus 824 ~~~~~~~~~~~~lF~~ 839 (972)
T PF03813_consen 824 EEQGLSDLDWKSLFRP 839 (972)
T ss_pred HhcCCCCCCHHHhcCC
Confidence 7332346789999975
No 22
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO). This domain is found exclusively in the metazoa.
Probab=97.07 E-value=0.038 Score=54.63 Aligned_cols=210 Identities=18% Similarity=0.207 Sum_probs=138.9
Q ss_pred ecccccCCCCCC-CCceEEeecCCcccchHHHHHHHHH----HHhcCCCc--c----eeEEeccCceeEEEEEE--C--C
Q 013399 144 YGSYGLGVHGSE-SDIDALCLGPEFATMAEDFFVVLHN----MLKSRPEV--S----EIHCVKDAKVPLMRFKF--D--G 208 (444)
Q Consensus 144 FGS~~lGv~~p~-SDID~v~v~p~~~~~~~~ff~~l~~----~L~~~~~v--~----~v~~I~~ArVPIIKf~~--~--g 208 (444)
.||+.-|+.+.| -+.|+|+++..-.| .+..+.+.+ .|++...- . -...+...+.|.+...+ . .
T Consensus 2 VG~~aKGllL~Gd~~~eLVVlck~kPT--~~lL~~v~~~L~~~L~~~~~~ev~~~~e~~~~~~~~~~~~~~~~~~lts~~ 79 (248)
T PF07528_consen 2 VGSFAKGLLLKGDNDVELVVLCKEKPT--KELLNRVAEKLPEQLKKVTPEEVTNSVEAAIIIDSCKEPKLEVGIDLTSPV 79 (248)
T ss_pred cceecCCceecCCceEeEEEEcCCCCc--HHHHHHHHHHHHHHHhhhCccccccchhhhhhhcccccccceeeEEecCCc
Confidence 599999999986 67899999887766 355555444 44443211 1 11112233345655543 2 3
Q ss_pred eeeccccccccccCCCccccCCCchhccccch-hhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCc
Q 013399 209 ILIDLPYACLHVLSVPENVDVLNPFFLRDLDE-TSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHG 287 (444)
Q Consensus 209 I~vDLsf~~~~~~~~p~~~~~~~~~~L~~ld~-~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G 287 (444)
+.+.+.... .+++....++.. .||. .+..+|-.+|-+....+........+.++|++|-..++--- ++
T Consensus 80 ~r~~~~~~~-----~~~~~~~~dp~~--~Ld~~~cl~aLaalRhakWFq~~a~~l~s~~~viRIlrDl~~R~p~----w~ 148 (248)
T PF07528_consen 80 MRVRVLITT-----IPENLSKLDPED--HLDRKKCLSALAALRHAKWFQARANGLQSCVIVIRILRDLRQRVPT----WQ 148 (248)
T ss_pred eEEEEeccc-----cCccccccChhh--cCCHHHHHHHHHHHHHhHHHHHHhccCCCcceehhhHHHHHHhCCC----CC
Confidence 333333322 233333333322 2444 57888889999999998888888899999999998877532 66
Q ss_pred ccchHHHHHHHHHHHHhCCC---CCHHHHHHHHHHhhccCCCCCceeecCCCCCCCCCCCCCCCcceeeCCCC-CCCccc
Q 013399 288 FLGGVHLAILVAHVCQNHPK---GSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCS-PHEYCH 363 (444)
Q Consensus 288 ~Lgg~s~alLva~~~Ql~P~---~sl~~LL~~FF~~Ys~fdw~~pV~l~~g~~~~~~~~~~~~~~m~IitP~~-P~~N~a 363 (444)
.|+++.+-+|+-+..-.-|+ .++++-+.++|+.-|. ++.+ +|++ -|.||++ ...++.
T Consensus 149 ~L~~W~leLL~~~~i~~~~~~~~l~~g~a~RRvle~las-----Gill-p~~~-------------gl~DPcE~~~~~~~ 209 (248)
T PF07528_consen 149 PLSSWALELLVEKAISNNSSRQPLSPGDAFRRVLECLAS-----GILL-PGSP-------------GLRDPCEKDPVDVL 209 (248)
T ss_pred CCChhHHHHHHHHHeeeCCCCCCCChHHHHHHHHHHHhC-----ceec-CCCC-------------CCcCCCCCCCceee
Confidence 79999999988777663333 6899999999999872 3333 1111 1568887 667788
Q ss_pred CCCChhhHHHHHHHHHHHHHHH
Q 013399 364 SNITRSTFYKIRTEFLRGHNTT 385 (444)
Q Consensus 364 ~nVs~st~~~I~~Ef~rA~~il 385 (444)
.+.|...++.|..--|.+.+++
T Consensus 210 ~~lt~qq~e~it~sAQ~~LRll 231 (248)
T PF07528_consen 210 DTLTLQQREDITSSAQTALRLL 231 (248)
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777777766
No 23
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=96.51 E-value=0.006 Score=51.84 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCceEEeecCCc
Q 013399 105 RRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEF 167 (444)
Q Consensus 105 R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~ 167 (444)
.+++++++...+++|. | -.++-.||||+=|=..|+||||+++-....
T Consensus 7 ~~~~lr~~~~~l~~k~-------g---------v~~~~vFGS~aRgE~~~~SDIDILVef~~~ 53 (97)
T COG1669 7 LKKILRKIKPELKEKY-------G---------VKRVAVFGSYARGEQKPDSDIDILVEFEPG 53 (97)
T ss_pred HHHHHHHHHHHHHHHh-------C---------CceEEEeeeeecCCCCCCCCceeEEeecCC
Confidence 3444666666666553 2 368999999999999999999999875443
No 24
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=96.49 E-value=0.029 Score=51.47 Aligned_cols=119 Identities=17% Similarity=0.250 Sum_probs=78.2
Q ss_pred eEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcce-eEEeccCceeEEEEEECCeeecccccc
Q 013399 139 ATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSE-IHCVKDAKVPLMRFKFDGILIDLPYAC 217 (444)
Q Consensus 139 ~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~-v~~I~~ArVPIIKf~~~gI~vDLsf~~ 217 (444)
..-...|...+|+..++||||++|..+.. +.|-+.+.+.-.+.++.+- -..|..-..=+..|.+.|..+-|---+
T Consensus 16 ~~PiL~GTiPi~Idi~~SDLDIic~~~d~----~~F~~~l~~~f~~~~~f~~~~~~i~~~~~~~~~F~~~~~~~EiF~Q~ 91 (152)
T PF14091_consen 16 YDPILVGTIPIGIDIPGSDLDIICEVPDP----EAFEQLLQSLFGQFEGFTIKEKTIRGEPSIVANFRYEGFPFEIFGQP 91 (152)
T ss_pred CCCEEecccccccCCCCCCccEEEEeCCH----HHHHHHHHHHhccCCCceeeeceeCCceeEEEEEEECCceEEEeecC
Confidence 35567899999999999999999999864 3444444444444443221 123445555667888889888775332
Q ss_pred ccccCCCccccCCCchhccccchhhhhhcchhhhHHHHHHHcCCc-cchhHHHHHHH--------HHHHHhccCCC
Q 013399 218 LHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDL-EKFQPVLRCIK--------LWAKRRGVYGN 284 (444)
Q Consensus 218 ~~~~~~p~~~~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~-~~Fr~llr~IK--------~WAk~RgI~~~ 284 (444)
.+ +..-||+|=...-.+++... +.||.-+|-+| +||+--||.++
T Consensus 92 ~P-----------------------v~~QnayrHm~iE~rLL~~~g~~~r~~Ii~LK~~GlKTEPAFa~lLgL~GD 144 (152)
T PF14091_consen 92 IP-----------------------VEEQNAYRHMLIEHRLLELHGPSFREEIIELKESGLKTEPAFAKLLGLEGD 144 (152)
T ss_pred CC-----------------------hhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCcchHHHHHHhCCCCC
Confidence 21 23357888655545666655 88999988888 46666666554
No 25
>COG1708 Predicted nucleotidyltransferases [General function prediction only]
Probab=95.84 E-value=0.041 Score=46.95 Aligned_cols=30 Identities=37% Similarity=0.513 Sum_probs=27.2
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCC
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPE 166 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~ 166 (444)
....++.|||++-|=+.+.||||++++++.
T Consensus 25 ~~~~v~LfGS~arG~~~~~SDiDv~vv~~~ 54 (128)
T COG1708 25 GDLLIYLFGSYARGDFVKESDIDLLVVSDD 54 (128)
T ss_pred CCeEEEEEccCcccccccCCCeeEEEEcCC
Confidence 368999999999999999999999999843
No 26
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat. It carries the region of enzymic activity between residues 320 and 344 at the extreme C-terminal end []. Oligoadenylate synthetases are antiviral enzymes that counteract viral attack by degrading viral RNA. The enzyme uses ATP in 2'-specific nucleotidyl transfer reactions to synthesise 2'.5'-oligoadenylates, which activate latent ribonuclease, resulting in degradation of viral RNA and inhibition of virus replication []. This domain is often associated with IPR002934 from INTERPRO. ; PDB: 1PX5_B.
Probab=95.83 E-value=0.033 Score=52.85 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=33.0
Q ss_pred ccchhHHHHHHHHHHHHhccCCCc-CcccchHHHHHHHHHHHHhCCC
Q 013399 262 LEKFQPVLRCIKLWAKRRGVYGNL-HGFLGGVHLAILVAHVCQNHPK 307 (444)
Q Consensus 262 ~~~Fr~llr~IK~WAk~RgI~~~~-~G~Lgg~s~alLva~~~Ql~P~ 307 (444)
....+.|+|+||+|-+...-.... -+-..+|++-||+++.-....+
T Consensus 41 P~klK~LIrLVKhWy~~~~~~~~~~~~lPpsYaLELLtIyAWE~g~~ 87 (190)
T PF10421_consen 41 PTKLKNLIRLVKHWYQQCKKKKCGGGSLPPSYALELLTIYAWEQGCG 87 (190)
T ss_dssp -HHHHHHHHHHHHHHHHHHCC--HTT-S--HHHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHhcCC
Confidence 467899999999999987666333 3457789999999999877644
No 27
>PRK13746 aminoglycoside resistance protein; Provisional
Probab=95.38 E-value=0.045 Score=54.56 Aligned_cols=31 Identities=32% Similarity=0.170 Sum_probs=27.7
Q ss_pred eEEEEecccccCCCCCCCCceEEeecCCccc
Q 013399 139 ATILTYGSYGLGVHGSESDIDALCLGPEFAT 169 (444)
Q Consensus 139 ~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~ 169 (444)
..++.|||++.|-..|.||||++++.....+
T Consensus 29 ~~vyLfGS~~~G~~~p~SDIDllvvv~~~l~ 59 (262)
T PRK13746 29 LAIHLYGSAVDGGLKPHSDIDLLVTVAVPLD 59 (262)
T ss_pred EEEEEECCcccCCCCCCCceeEEEEeCCCCC
Confidence 4799999999999999999999999877654
No 28
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=93.81 E-value=0.13 Score=49.98 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=26.9
Q ss_pred CeEEEEecccc----cCC--CCCCCCceEEeecCCcc
Q 013399 138 HATILTYGSYG----LGV--HGSESDIDALCLGPEFA 168 (444)
Q Consensus 138 ~~~l~~FGS~~----lGv--~~p~SDID~v~v~p~~~ 168 (444)
+....+|||+. +|+ -.++||||+++-.+...
T Consensus 120 g~~~gv~GS~a~qlaTG~~~l~~~SDLDLLi~~~~~~ 156 (221)
T PRK02098 120 GVDCRVFGSLAWQALTGLPYLSASSDLDLLWPLPAAA 156 (221)
T ss_pred CCcEEEeeehHHHHhhCCcccCCCCCeeEEEecCChh
Confidence 56999999999 999 78999999998887543
No 29
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific. Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.
Probab=93.37 E-value=0.18 Score=48.47 Aligned_cols=45 Identities=24% Similarity=0.274 Sum_probs=32.4
Q ss_pred CeEEEEeccc----ccCC--CCCCCCceEEeecCCcccchHHHHHHHHHHHhc
Q 013399 138 HATILTYGSY----GLGV--HGSESDIDALCLGPEFATMAEDFFVVLHNMLKS 184 (444)
Q Consensus 138 ~~~l~~FGS~----~lGv--~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~ 184 (444)
+....+|||+ .+|+ -.++||||+++-.|...+ .+.+ ..+.+.|..
T Consensus 108 ~~~~gv~GS~~~qlaTg~~~~~~~SDLDLLi~~~~~~~-~~~~-~~ll~~l~~ 158 (202)
T TIGR03135 108 GVPWGVYGSAGWQLLTGLPYLHASSDLDLLLRAPSPLS-LARL-LALLQALEA 158 (202)
T ss_pred CCcEEEecchHHHHhcCCcccCCCCCeeEEEcCCChhh-HHHH-HHHHHHHhc
Confidence 5799999999 8999 789999999998876443 2333 333444443
No 30
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=92.82 E-value=1 Score=45.85 Aligned_cols=113 Identities=20% Similarity=0.214 Sum_probs=70.0
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEE--EE----CCee
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRF--KF----DGIL 210 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf--~~----~gI~ 210 (444)
+..++.+-|||+=|-.+ .+|||+++..+.... ..++..+...|++.+.+..+. ..-..-... .. .|+.
T Consensus 159 ~~~~v~i~GS~RRg~et-~gDiDilv~~~~~~~--~~~~~~v~~~l~~~~~~~~~~---~~g~~k~~~~~~~~~~~~~~r 232 (307)
T cd00141 159 PVLQVEIAGSYRRGKET-VGDIDILVTHPDATS--RGLLEKVVDALVELGFVTEVL---SKGDTKASGILKLPGGWKGRR 232 (307)
T ss_pred CceEEEEcccccCCCCc-cCCEEEEEecCCccc--cccHHHHHHHHHhCCCeehhh---hCCCceEEEEEecCCCCCceE
Confidence 46899999999998776 479999998876532 356677788888877664421 111111111 12 2899
Q ss_pred eccccccccccCCCccccCCCchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCccc
Q 013399 211 IDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFL 289 (444)
Q Consensus 211 vDLsf~~~~~~~~p~~~~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~L 289 (444)
|||-++... .+ .-.++-+-.+. ...|-++.||++||..=+..|..
T Consensus 233 VDl~~~p~~------~~------------------------~~all~fTGs~----~~nr~lR~~A~~~G~~L~~~GL~ 277 (307)
T cd00141 233 VDLRVVPPE------EF------------------------GAALLYFTGSK----QFNRALRRLAKEKGLKLNEYGLF 277 (307)
T ss_pred EEEEEeCHH------HH------------------------HHHHHHhhCCH----HHHHHHHHHHHHcCCeeeccccc
Confidence 999987531 00 01122222222 24566699999999887776654
No 31
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=89.88 E-value=0.33 Score=42.17 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=40.2
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCcccc---hHHHHHHHHHHHhcCCCcce
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATM---AEDFFVVLHNMLKSRPEVSE 190 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~---~~~ff~~l~~~L~~~~~v~~ 190 (444)
++.++..-|||+=|-.+.+ |||+++..|..... ...++..+.+.|.+..-+++
T Consensus 23 p~~~v~i~GSyRRGK~~~g-DiDiLIt~~~~~~~~~~~~~~l~~lv~~L~~~g~i~~ 78 (112)
T PF14792_consen 23 PGLEVEICGSYRRGKETSG-DIDILITHPDPSSVSKKLEGLLEKLVKRLEEKGFITD 78 (112)
T ss_dssp TT-EEEEEHHHHTT-SEES-SEEEEEEETTCSTTTCSTTCHHHHHHHHHHHTTSEEE
T ss_pred CCcEEEEccccccCCCcCC-CeEEEEeCCCcCcchhhHHHHHHHHHHHHHhCCeEEE
Confidence 5789999999999988776 99999998876542 14688889999988655543
No 32
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown]
Probab=89.72 E-value=3.2 Score=48.21 Aligned_cols=108 Identities=17% Similarity=0.229 Sum_probs=73.2
Q ss_pred hhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHHHHHHHHHHh-C---CCCCHHHHHHHHHHhhccCC
Q 013399 250 RANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQN-H---PKGSLNTLVANFFKTYAYWP 325 (444)
Q Consensus 250 R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~alLva~~~Ql-~---P~~sl~~LL~~FF~~Ys~fd 325 (444)
|.+..|..+-..++.|-.++|+-|.|...+=+.+ |.+ -=++-||||+..+. . |..|+-.=+.+|..+-|+||
T Consensus 806 ~ht~aL~~l~qsh~~ys~vvrLaKrWl~shLL~~---h~~-De~iELLva~lf~~p~p~~~psS~~~gFlRfL~llS~~d 881 (1121)
T KOG2054|consen 806 LHTLALQSLSQSHPFYSSVVRLAKRWLGSHLLSG---HHL-DEAIELLVAALFLKPGPLVPPSSPENGFLRFLSLLSTWD 881 (1121)
T ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcc---chH-HHHHHHHHHHHhcCccCCCCCCCcchhHHHHHHHHhcCc
Confidence 3445555556678899999999999999886654 223 67788999887654 2 45666677888889999999
Q ss_pred CC-CceeecC--CCCC--------CCCCCCCCCCcceeeCCCCCCCc
Q 013399 326 WP-TPVMLQD--PMLP--------AAGYPSETRSLMPIRLPCSPHEY 361 (444)
Q Consensus 326 w~-~pV~l~~--g~~~--------~~~~~~~~~~~m~IitP~~P~~N 361 (444)
|. .|.++.- +-+. .....+.....|.|+||.+-..+
T Consensus 882 W~~~PLIvd~nn~~~ed~~~e~~e~f~s~R~~lp~m~vit~yD~~~~ 928 (1121)
T KOG2054|consen 882 WKFDPLIVDFNNGFPEDERSELEEKFISARKQLPPMVVITPYDHLGS 928 (1121)
T ss_pred ccCCceEEEcCCCCcHHHHHHHHHHHhhhcccCCceEEeeccccccc
Confidence 98 5776532 1110 11112222358999999876443
No 33
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins. Escherichia coli GlnD and -E participate in the Glutamine synthetase (GS)/Glutamate synthase (GOGAT) pathway for the assimilation of ammonium nitrogen. In nitrogen sufficiency, GlnE adenylates GS, reducing GS activity; when nitrogen is limiting, GlnE deadenylates GS-AMP, restoring GS activity. When nitrogen is limiting, GlnD uridylylates the nitrogen regulatory protein PII to PII-UTP, and in nitrogen sufficiency, it removes the modifying groups. The activity of Escherichia coli GlnE is modulated by PII-proteins. PII-UMP promotes GlnE deadenylation activity, and PII promotes GlnE adenylation activity. Escherichia coli GlnE has two separate NT domains. The N-terminal NT domain catalyzes the deadenylylation of GS, and the C-terminal NT domain the adenylylation reaction. The majority of proteins in this family conta
Probab=88.30 E-value=2.7 Score=38.47 Aligned_cols=48 Identities=29% Similarity=0.341 Sum_probs=36.1
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKS 184 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~ 184 (444)
...-+..+||++-|=-.+.||+|++++.+........+|..+.+.+.+
T Consensus 54 ~~~~~la~Gs~GR~E~~~~SD~D~~~v~~~~~~~~~~~~~~l~~~i~~ 101 (172)
T cd05401 54 VPFALLALGSYGRGELNPSSDQDLLLLYDDDGDEVAAYFEELAERLIK 101 (172)
T ss_pred CcEEEEEeCCcccCCcCCCcCcceEEEeCCCCchHHHHHHHHHHHHHH
Confidence 478999999999999999999999999865432123566665555443
No 34
>COG1665 Predicted nucleotidyltransferase [General function prediction only]
Probab=87.81 E-value=0.1 Score=52.11 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=46.2
Q ss_pred eEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHH-HhcCCCcceeEEeccCceeEEEEE------------
Q 013399 139 ATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNM-LKSRPEVSEIHCVKDAKVPLMRFK------------ 205 (444)
Q Consensus 139 ~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~-L~~~~~v~~v~~I~~ArVPIIKf~------------ 205 (444)
-.+=.-||..+|++..+||||+++-++.+-..|+.+.....+- |.. ..-..-+.|-.-|.|=|-|.
T Consensus 122 ~~mGVTGSiL~gl~~~nSDIDfVVYG~~~~~aRea~~~~~e~~~l~~-ldd~~W~~iyrkr~~~l~f~ef~~~E~RK~nR 200 (315)
T COG1665 122 NSMGVTGSILLGLYDENSDIDFVVYGQMWFRAREAILDAIEDFPLGE-LDDAEWERIYRKRIPELSFDEFLYHERRKGNR 200 (315)
T ss_pred hhccccccccccccCCCCCceEEEEcHHHHHHHHHHHhhhhccCccC-cCHHHHHHHHHcccCCCCHHHHHHHhhhccCc
Confidence 3556779999999999999999999955432222221111111 111 00111234555555656552
Q ss_pred --ECCeeecccccc
Q 013399 206 --FDGILIDLPYAC 217 (444)
Q Consensus 206 --~~gI~vDLsf~~ 217 (444)
+.|..|||+|++
T Consensus 201 giv~gt~fdlLfvr 214 (315)
T COG1665 201 GIVGGTYFDLLFVR 214 (315)
T ss_pred eeecCEEEEEEEec
Confidence 358999999997
No 35
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription]
Probab=87.41 E-value=34 Score=34.52 Aligned_cols=212 Identities=18% Similarity=0.224 Sum_probs=111.8
Q ss_pred HHHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCc
Q 013399 79 DEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDI 158 (444)
Q Consensus 79 d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDI 158 (444)
|-..+++|++-=. ++.|+.+|...=.+.+.+++.++..-+. -|+.+ ..-.+|.-.|||..|.-+.++|.
T Consensus 38 D~~f~~alLkRnq--dL~P~~~~q~~I~~~vtKV~~vLdn~~~-----~~L~~----~~ieevrqVGSF~k~T~~tg~~~ 106 (362)
T KOG3793|consen 38 DTSFSEALLKRNQ--DLAPNSAEQASILSLVTKVNNVLDNLVA-----PGLFE----VQIEEVRQVGSFKKGTMTTGHNV 106 (362)
T ss_pred chHHHHHHHhhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhcc-----CCceE----eehhhhhhccceeccccccCCcc
Confidence 7778888887544 7999999987777777777777654321 12322 23457778999999999998876
Q ss_pred -eEEeecCCcccch--HHHHHHHHHHHhcCC--CcceeEEeccCceeEEEE--EE--CCeeeccccccccccCCCccccC
Q 013399 159 -DALCLGPEFATMA--EDFFVVLHNMLKSRP--EVSEIHCVKDAKVPLMRF--KF--DGILIDLPYACLHVLSVPENVDV 229 (444)
Q Consensus 159 -D~v~v~p~~~~~~--~~ff~~l~~~L~~~~--~v~~v~~I~~ArVPIIKf--~~--~gI~vDLsf~~~~~~~~p~~~~~ 229 (444)
|+|++-..-.+.+ ...-+++.+-|+... ++-. |=+.+- .+ ..-+|-|.+. .+|+++-.
T Consensus 107 advVViLkTLPt~EaV~aLg~Kv~e~lka~d~~Evlt--------vl~~e~G~~I~s~~~~VRiLIt-----~iP~n~~K 173 (362)
T KOG3793|consen 107 ADLVVILKTLPTLEAVAALGNKVVESLRAQDPSEVLT--------VLTNETGFEISSSDATVRILIT-----TVPPNLRK 173 (362)
T ss_pred cceEEEeecCCcHHHHHHHHHHHHHHhhhcChHHHHH--------HHhhccceeeecccceEEEEEe-----ecCchhcc
Confidence 6666644333311 112233444444321 1111 111111 11 1222333333 34555544
Q ss_pred CCchhccccchhhhh-hcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHH-HHHHHHHHhC-C
Q 013399 230 LNPFFLRDLDETSWK-SLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLA-ILVAHVCQNH-P 306 (444)
Q Consensus 230 ~~~~~L~~ld~~s~~-slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~a-lLva~~~Ql~-P 306 (444)
+.+.+ .||.+-+. .+-.+|-+..+-+. ......+.|+|++|---.+ +-||=-=-.|+ =+++++|-+. |
T Consensus 174 LEP~l--HLD~K~M~~~l~a~RH~~WFee~-A~~s~~~~lir~LKDlr~r------~~~F~PLs~W~ldll~h~avmNnp 244 (362)
T KOG3793|consen 174 LEPEL--HLDIKVMQSALAAIRHARWFEEN-ASQSTVKVLIRLLKDLRIR------FPGFEPLTPWILDLLGHYAVMNNP 244 (362)
T ss_pred cChhh--hhhHHHHHHHHHHHhhhhhhhhh-hhHHHHHHHHHHHHHHHhh------cCCCCCchHHHHHHHHHHHHHcCC
Confidence 44432 23333221 22333433332221 1234466788888764332 23442112333 3567777664 4
Q ss_pred C---CCHHHHHHHHHHhhcc
Q 013399 307 K---GSLNTLVANFFKTYAY 323 (444)
Q Consensus 307 ~---~sl~~LL~~FF~~Ys~ 323 (444)
+ +.++.-..+||++.+.
T Consensus 245 ~RQ~l~ln~Afrr~~qilaA 264 (362)
T KOG3793|consen 245 TRQPLALNVAYRRCLQILAA 264 (362)
T ss_pred ccccchhhHHHHHHHHHHHh
Confidence 4 5688899999999983
No 36
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.87 E-value=5.1 Score=45.82 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCceEEeecCCccc
Q 013399 115 IVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFAT 169 (444)
Q Consensus 115 iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~ 169 (444)
.+..|......+.|+++. .+.-+...|.|+=|--.|.||||++++.|...+
T Consensus 47 ~~d~~L~~lw~~~g~~~~----~~~aLvAVGGyGRgEL~P~SDiDlL~L~p~~~~ 97 (867)
T COG2844 47 LVDQLLIRLWQEIGFADA----SGLALVAVGGYGRGELHPLSDIDLLLLSPQKLT 97 (867)
T ss_pred HHHHHHHHHHHHcCcccc----cceEEEEeccccccccCCCccceEEEecCCCCC
Confidence 333444444445566653 578999999999999999999999999987665
No 37
>PF10620 MdcG: Phosphoribosyl-dephospho-CoA transferase MdcG; InterPro: IPR017557 Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61 from EC). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.; GO: 0016779 nucleotidyltransferase activity
Probab=80.35 E-value=3.7 Score=39.73 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=28.2
Q ss_pred CCeEEEEecccc----cCCC--CCCCCceEEeecCCcccchHHHHHHH
Q 013399 137 THATILTYGSYG----LGVH--GSESDIDALCLGPEFATMAEDFFVVL 178 (444)
Q Consensus 137 ~~~~l~~FGS~~----lGv~--~p~SDID~v~v~p~~~~~~~~ff~~l 178 (444)
.+...-+|||++ ||+. .++||||+++-.+.... .+.+...+
T Consensus 115 ~~~~~gv~GS~g~qlaTGl~~l~~~SDLDLli~~~~~~~-~~~l~~~L 161 (213)
T PF10620_consen 115 LGLRWGVYGSLGFQLATGLPYLHADSDLDLLIRPPSPSQ-ADALLALL 161 (213)
T ss_pred cCCCEEEehhHHHHHHhCccccCCCCCceEEEeCCChhH-HHHHHHHH
Confidence 478999999985 4443 47999999988887643 23444433
No 38
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=80.15 E-value=11 Score=33.83 Aligned_cols=48 Identities=21% Similarity=0.195 Sum_probs=37.5
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCccc-chHHHHHHHHHHHhc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFAT-MAEDFFVVLHNMLKS 184 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~-~~~~ff~~l~~~L~~ 184 (444)
...-+..+||++=+=.++.||+|..++.....+ ..+.+|..|.+.+..
T Consensus 48 ~~~a~lalGS~GR~E~~~~sDqD~alv~~d~~~~~~~~~f~~~a~~~~~ 96 (138)
T PF03445_consen 48 VPFAWLALGSYGRREQTLYSDQDNALVFEDEESEEDRAYFEAFAERLVD 96 (138)
T ss_pred CCEEEEEECcccccCCCcCccccceeeecCccchhHHHHHHHHHHHHHH
Confidence 689999999999999999999999999877222 135677766665543
No 39
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=79.88 E-value=8.8 Score=36.11 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=46.8
Q ss_pred CeEEEEeccccc----CCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEECCeeecc
Q 013399 138 HATILTYGSYGL----GVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDL 213 (444)
Q Consensus 138 ~~~l~~FGS~~l----Gv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~gI~vDL 213 (444)
+.+.+..|++++ |.--.+.|||+.+..++... ..+++..+++...-.-+-+.. ...-.++++...++.||+
T Consensus 16 gv~~~ivGG~av~l~~g~~r~T~DIDlfi~~~~~~~-~~~~~~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~v~IDl 90 (181)
T PF09970_consen 16 GVEYVIVGGAAVNLAYGRRRTTKDIDLFIENPSPNL-EADALREVAEENGWDLGWTDF----GTPRYVVKVGGEDVRIDL 90 (181)
T ss_pred CCeEEEECHHHHHHHhCCCCCCCCeEEEeCCCchHH-HHHHHHHHHHHcCCCcCcccc----CCCceEEEeCCCCeEEEc
Confidence 568999999864 66667899999887765432 334555444322110011111 223445566667999999
Q ss_pred ccccccccCCC
Q 013399 214 PYACLHVLSVP 224 (444)
Q Consensus 214 sf~~~~~~~~p 224 (444)
+.++....+|
T Consensus 91 -~~ni~~~~v~ 100 (181)
T PF09970_consen 91 -LENIGDFYVP 100 (181)
T ss_pred -hhccCCcccC
Confidence 5555433333
No 40
>PRK05007 PII uridylyl-transferase; Provisional
Probab=78.89 E-value=8.6 Score=44.76 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCceEEeecCCc
Q 013399 108 VIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEF 167 (444)
Q Consensus 108 vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~ 167 (444)
++.....++.++++..-...+++.. ++..|...|+|+=|=-.|.||||++++.+..
T Consensus 54 ~~~~~s~~~D~~l~~l~~~~~~~~~----~~~alvAvGgyGR~EL~p~SDiDll~l~~~~ 109 (884)
T PRK05007 54 LVEARTEFIDQLLQRLWIEAGFDQI----PDLALVAVGGYGRGELHPLSDIDLLILSRKK 109 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCc----CceEEEecCCCCCcccCCcccceEEEEeCCC
Confidence 3444444444444433333344321 4689999999999999999999999998744
No 41
>PF10127 Nuc-transf: Predicted nucleotidyltransferase; InterPro: IPR018775 Proteins in this entry are predicted to catalyse the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.
Probab=76.48 E-value=2.3 Score=41.51 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=23.2
Q ss_pred eEEEEecccccCCCCCCCCceEEeecC
Q 013399 139 ATILTYGSYGLGVHGSESDIDALCLGP 165 (444)
Q Consensus 139 ~~l~~FGS~~lGv~~p~SDID~v~v~p 165 (444)
.-....||.+-|+.+|+||.|+-.|.-
T Consensus 21 l~~~~sGS~a~G~~s~dSD~D~r~vy~ 47 (247)
T PF10127_consen 21 LYACESGSRAYGFASPDSDYDVRGVYI 47 (247)
T ss_pred EEEecccccccCCCCCCcCcccchhcc
Confidence 456679999999999999999987754
No 42
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=73.48 E-value=12 Score=38.49 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=38.4
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCC
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRP 186 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~ 186 (444)
+++.+..-|||+=|- ..+.|||+++..|..-+.....+..+...|++..
T Consensus 170 p~~~vt~~GsfRRGk-~~ggDvD~LithP~~~s~~~~~~~~l~~~le~~g 218 (353)
T KOG2534|consen 170 PEAFVTVTGSFRRGK-KMGGDVDFLITHPGSTSTEAKLLQLLMILLEKKG 218 (353)
T ss_pred CCcEEEEeccccCCc-ccCCCeeEEEeCCCCCchhhhHHHHHHHHHHhcC
Confidence 678999999999984 5689999999988765434456777888887743
No 43
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=71.75 E-value=16 Score=41.53 Aligned_cols=65 Identities=22% Similarity=0.168 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHH
Q 013399 102 EDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNM 181 (444)
Q Consensus 102 ~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~ 181 (444)
.+.|+++-+.-..+++. .+++ .+..|...|+|+=|=-.|.||||++++.+.... +++.+.|...
T Consensus 5 ~~~~~~~~~~~~~~~~~--------~~~~------~~~aLvAvGGYGR~EL~P~SDIDLLiL~~~~~~--~~~i~~~~~~ 68 (693)
T PRK00227 5 AQLREDAEASALALLGS--------LQLP------PGTALAATGSLARREMTPYSDLDLILLHPPGAT--PDGVEDLWYP 68 (693)
T ss_pred HHHHHHHHHHHHHHHHh--------cCCC------CCeEEEEeccccccCcCCCcCceEEEEeCCccc--HHHHHHHHHH
Confidence 34566666666666664 3454 357999999999999999999999999874322 3444444433
Q ss_pred H
Q 013399 182 L 182 (444)
Q Consensus 182 L 182 (444)
|
T Consensus 69 L 69 (693)
T PRK00227 69 I 69 (693)
T ss_pred H
Confidence 3
No 44
>PRK01293 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=70.67 E-value=10 Score=36.62 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=29.1
Q ss_pred CeEEEEecccc----cCC--CCCCCCceEEeecCCcccchHHHHHHHHHHHh
Q 013399 138 HATILTYGSYG----LGV--HGSESDIDALCLGPEFATMAEDFFVVLHNMLK 183 (444)
Q Consensus 138 ~~~l~~FGS~~----lGv--~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~ 183 (444)
+...-+|||.+ ||+ -.++||||+++-.|...+ . +-+..+.+.+.
T Consensus 109 ~~~wgv~GS~g~qlaTGl~~l~~~SDLDLlir~~~~l~-~-~~~~~ll~~l~ 158 (207)
T PRK01293 109 GLAWGVTGSAGFELATGIPVLHADSDLDLLIRAPQPLA-R-DQARELLQLLD 158 (207)
T ss_pred CCceeeehhHHHHHhhCCccccCCCCccEeecCCCccc-H-HHHHHHHHHHh
Confidence 56888999985 443 347899999998887554 2 23334444444
No 45
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=70.02 E-value=19 Score=41.90 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCceEEeecCCc
Q 013399 108 VIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEF 167 (444)
Q Consensus 108 vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~ 167 (444)
++.....++.++++..-.....+.. .+..|...|+|+=|=-.|.||||++++.+..
T Consensus 30 ~~~~~~~~~D~~l~~l~~~~~~~~~----~~iaLvAvGGYGR~eL~P~SDIDlliL~~~~ 85 (854)
T PRK01759 30 LIENRSDFYDQLLIHLWQQFGLEEQ----SDLALIAVGGYGRREMFPLSDLDILILTEQP 85 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCC----CCeEEEEeCCcccccCCCcccceEEEEeCCC
Confidence 5555555555555443222222211 3589999999999999999999999998743
No 46
>PF03710 GlnE: Glutamate-ammonia ligase adenylyltransferase; InterPro: IPR005190 This is a conserved repeated domain found in GlnE proteins. These proteins adenylate and deadenylate glutamine synthases: ATP + {L-Glutamate:ammonia ligase (ADP-forming)} = Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase (ADP-forming)}. The domain is related to the nucleotidyltransferase domain IPR002934 from INTERPRO.; GO: 0008882 [glutamate-ammonia-ligase] adenylyltransferase activity; PDB: 1V4A_A 3K7D_A.
Probab=68.56 E-value=16 Score=35.99 Aligned_cols=61 Identities=20% Similarity=0.197 Sum_probs=34.6
Q ss_pred HHHhCCChhh-hccCCeEEEEecccccCCCCCCCCceEEeecCCccc------chHHHHHHHHHHHhc
Q 013399 124 AWQRRLPKEQ-IAETHATILTYGSYGLGVHGSESDIDALCLGPEFAT------MAEDFFVVLHNMLKS 184 (444)
Q Consensus 124 ~~~~~~~~~~-~~~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~------~~~~ff~~l~~~L~~ 184 (444)
..+.|.|... ....+.-|.-.|-++-+=-..+||||++++.+.... ....||.++.+.+.+
T Consensus 112 ~~~~G~p~~~~~~~~~~~ViamGKlGg~ELny~SDiDLifvy~~~~~~~~~~~~~~~~~~rl~~~~~~ 179 (247)
T PF03710_consen 112 AARYGRPPDEDGEPAGFAVIAMGKLGGRELNYSSDIDLIFVYDPDGETGRRSISNQEFFTRLAQRLIR 179 (247)
T ss_dssp HHHCTSCCCCTTCC-SEEEEE-HHHHTT---TT--EEEEEEE---TT-SSS-SBHHHHHHHHHHHHHH
T ss_pred HHHcCCCCcccCCcCCeEEEEeccccccccCCccCCceEEEeccccccccChhhHHHHHHHHHHHHHH
Confidence 3445555421 122478899999999988899999999999654321 135788888777655
No 47
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=66.84 E-value=68 Score=33.05 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=25.1
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEF 167 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~ 167 (444)
+..++.+-|||+=|-.+ .+|||+++..+..
T Consensus 163 ~~~~v~i~GSyRRgket-~gDIDili~~~~~ 192 (334)
T smart00483 163 PDAIVTLTGSFRRGKET-GHDVDFLITSPHP 192 (334)
T ss_pred CCcEEEEecccccCCCc-CCCeeEEEecCCc
Confidence 46899999999998776 4799999987764
No 48
>PRK03059 PII uridylyl-transferase; Provisional
Probab=63.80 E-value=28 Score=40.50 Aligned_cols=53 Identities=30% Similarity=0.449 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCceEEeecCC
Q 013399 108 VIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPE 166 (444)
Q Consensus 108 vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~ 166 (444)
++..+..++.++++..-...+.+ .+.-|...|+|+=|=-.|.||||++++.+.
T Consensus 37 ~~~~~s~l~d~~l~~~~~~~~~~------~~~alvAvGgyGR~EL~p~SDiDll~l~~~ 89 (856)
T PRK03059 37 LLHALSRLVDQALRRLWQECGLP------AGAALVAVGGYGRGELFPYSDVDLLVLLPD 89 (856)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC------CCeEEEEcCCCCCcccCCCCCCEEEEEecC
Confidence 55555555555554432222222 357999999999999999999999999864
No 49
>COG2413 Predicted nucleotidyltransferase [General function prediction only]
Probab=63.51 E-value=13 Score=35.90 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=23.7
Q ss_pred eEEEEecccccCCCCCCCCceEEeecCC
Q 013399 139 ATILTYGSYGLGVHGSESDIDALCLGPE 166 (444)
Q Consensus 139 ~~l~~FGS~~lGv~~p~SDID~v~v~p~ 166 (444)
..-+.+||-+.|=--|+||+|+.+..|-
T Consensus 38 ie~~v~gSvarGDV~p~SDvDV~I~~~v 65 (228)
T COG2413 38 IEAVVYGSVARGDVRPGSDVDVAIPEPV 65 (228)
T ss_pred chhEEEeeeeccCcCCCCCceEEEecCC
Confidence 4567899999998889999999998743
No 50
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=61.84 E-value=33 Score=40.11 Aligned_cols=31 Identities=32% Similarity=0.402 Sum_probs=28.0
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEF 167 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~ 167 (444)
.+..|...|+|+=|--.|.||||++++.+..
T Consensus 77 ~~~alvAvGgyGR~EL~p~SDiDll~l~~~~ 107 (895)
T PRK00275 77 ADIALVAVGGYGRGELHPYSDIDLLILLDSA 107 (895)
T ss_pred CCEEEEEcCCccccCcCCCCCceEEEEecCC
Confidence 3689999999999999999999999998754
No 51
>PRK03381 PII uridylyl-transferase; Provisional
Probab=61.69 E-value=31 Score=39.67 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=27.4
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCC
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPE 166 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~ 166 (444)
...-|...|+|+-|--.|.||||++++.+.
T Consensus 56 ~~~alvAvg~~gr~el~p~SD~Dll~l~~~ 85 (774)
T PRK03381 56 SGVALVAVGGLGRRELLPYSDLDLVLLHDG 85 (774)
T ss_pred CCeEEEEeCCcCCcCcCCCCCCeEEEEeCC
Confidence 358999999999999999999999999873
No 52
>COG3541 Predicted nucleotidyltransferase [General function prediction only]
Probab=61.37 E-value=4.1 Score=40.32 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=18.1
Q ss_pred EecccccCCCCCCCCceEEee
Q 013399 143 TYGSYGLGVHGSESDIDALCL 163 (444)
Q Consensus 143 ~FGS~~lGv~~p~SDID~v~v 163 (444)
--||..-|+..|+||+|+=-|
T Consensus 15 esGS~~yGf~spdSDyDvR~V 35 (248)
T COG3541 15 ESGSHLYGFPSPDSDYDVRGV 35 (248)
T ss_pred cccccccCCCCCCCccceeeE
Confidence 349999999999999998544
No 53
>PF03296 Pox_polyA_pol: Poxvirus poly(A) polymerase nucleotidyltransferase domain; InterPro: IPR024231 Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This entry represents the nucleotidyltransferase domain of the catalytic subunit [].; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=60.33 E-value=9.4 Score=34.70 Aligned_cols=61 Identities=21% Similarity=0.471 Sum_probs=29.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCC---CCceE
Q 013399 87 VQLMTNEGLVPSTEEEDKRRNV---IQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSE---SDIDA 160 (444)
Q Consensus 87 ~~~l~~~~~~Ps~ee~~~R~~v---l~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~---SDID~ 160 (444)
.+.|.++.+..-.++...|..| +..+++++.+.+++ + .-.-..||||.+-+--|+ .|||+
T Consensus 10 ~~~l~s~~v~~~~~~~~grh~vS~lV~~V~klmeEyLrr----h----------Nk~CicYGSyslhllN~~I~YgDIDi 75 (149)
T PF03296_consen 10 SDYLNSYNVANPSGKVMGRHNVSDLVENVNKLMEEYLRR----H----------NKSCICYGSYSLHLLNPNIKYGDIDI 75 (149)
T ss_dssp HHHHHHH--S-------------THHHHHHHHHHHHHHH---------------TTTEEEESHHHHHTTSTTS--SS-EE
T ss_pred HHHHHHhcccccCccccccccCcHHHHHHHHHHHHHHHh----h----------CCCeEEeeeeeEEecCCCcccCcchh
Confidence 4456666676666677777765 44555555555543 2 234578999988777765 99998
Q ss_pred E
Q 013399 161 L 161 (444)
Q Consensus 161 v 161 (444)
+
T Consensus 76 l 76 (149)
T PF03296_consen 76 L 76 (149)
T ss_dssp E
T ss_pred h
Confidence 6
No 54
>PRK14109 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=59.38 E-value=28 Score=41.26 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=37.0
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCcc--c--chHHHHHHHHHHHhc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFA--T--MAEDFFVVLHNMLKS 184 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~--~--~~~~ff~~l~~~L~~ 184 (444)
.+.-|..+|+|+-+=-.+.||||++++..... . ....||..+.+.+.+
T Consensus 722 ~~~avia~Gk~Gr~EL~~~SDlDl~fl~~~~~~~~~~~~~~~~~rlaq~l~~ 773 (1007)
T PRK14109 722 ARIAVIGMGRLGGRELGYGSDADVMFVHEPAPGADEAEAVRWATAVAEELRR 773 (1007)
T ss_pred CCEEEEEeccccccccCCCCCCcEEEEeCCCCCCCchhHHHHHHHHHHHHHH
Confidence 46899999999999999999999999975321 1 123678877776654
No 55
>PRK04374 PII uridylyl-transferase; Provisional
Probab=59.31 E-value=40 Score=39.35 Aligned_cols=29 Identities=34% Similarity=0.511 Sum_probs=26.9
Q ss_pred CeEEEEecccccCCCCCCCCceEEeecCC
Q 013399 138 HATILTYGSYGLGVHGSESDIDALCLGPE 166 (444)
Q Consensus 138 ~~~l~~FGS~~lGv~~p~SDID~v~v~p~ 166 (444)
+.-|...|+|+=|=-.|.||||++++.+.
T Consensus 72 ~~alvAvGgYGR~EL~p~SDIDLliL~~~ 100 (869)
T PRK04374 72 GLSLHAVGGYGRGELFPRSDVDLLVLGET 100 (869)
T ss_pred CEEEEEcCCccccccCCcccceEEEEecC
Confidence 57999999999999999999999999874
No 56
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=58.03 E-value=40 Score=39.09 Aligned_cols=31 Identities=32% Similarity=0.427 Sum_probs=27.8
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEF 167 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~ 167 (444)
.+.-+...|||+=|=-.|.||||++++.+..
T Consensus 42 ~~~aliA~GgyGR~El~p~SDiDll~l~~~~ 72 (850)
T TIGR01693 42 SGIALVAVGGYGRGELAPYSDIDLLFLHDGK 72 (850)
T ss_pred CCeEEEEeCCccccCcCCCCCCeEEEEeCCC
Confidence 3679999999999999999999999998644
No 57
>PRK08609 hypothetical protein; Provisional
Probab=57.98 E-value=66 Score=35.68 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=61.8
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEE-CCeeecccc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKF-DGILIDLPY 215 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~-~gI~vDLsf 215 (444)
...++..-|||+=|--+- .|||+++..+... . +.+.|.+.+.++++..-...+.- +.+.. .|+.|||-+
T Consensus 174 ~~~~v~~~GS~RR~~et~-gDiDili~~~~~~----~----~~~~l~~~~~v~~~~~~g~~~~~-~~~~~~~~~~vDl~~ 243 (570)
T PRK08609 174 EIIRFSRAGSLRRARETV-KDLDFIIATDEPE----A----VREQLLQLPNIVEVIAAGDTKVS-VELEYEYTISVDFRL 243 (570)
T ss_pred CccEEEeccchhcccccc-CCeeEEEecCCHH----H----HHHHHHcCccHHHHHhcCCceEE-EEEecCCCeEEEEEE
Confidence 467999999999998764 6999999876531 1 22333334444332111111111 12332 499999988
Q ss_pred ccccccCCCccccCCCchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCccc
Q 013399 216 ACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFL 289 (444)
Q Consensus 216 ~~~~~~~~p~~~~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~L 289 (444)
.... .+ | ..++-.-.+. .-.+-++.||++||+.=+-+|..
T Consensus 244 v~~~------~~--------------------~----~aL~yfTGS~----~hn~~lr~~A~~~g~~l~e~gl~ 283 (570)
T PRK08609 244 VEPE------AF--------------------A----TTLHHFTGSK----DHNVRMRQLAKERGEKISEYGVE 283 (570)
T ss_pred eCHH------HH--------------------H----HHHHHHhccH----HHHHHHHHHHHHcCCcccccccc
Confidence 7531 00 0 0111111222 23455699999999988877764
No 58
>PHA02603 nrdC.11 hypothetical protein; Provisional
Probab=53.54 E-value=7.2 Score=40.31 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=21.5
Q ss_pred EEEEecccccCCCCCCCCceEEeec
Q 013399 140 TILTYGSYGLGVHGSESDIDALCLG 164 (444)
Q Consensus 140 ~l~~FGS~~lGv~~p~SDID~v~v~ 164 (444)
-...+||...|+.+|+||+|.--|.
T Consensus 5 ~~~~~GShaYG~~tp~SD~D~rGV~ 29 (330)
T PHA02603 5 MKGLFGSHLYGTSTPESDVDYKGIF 29 (330)
T ss_pred EEEecccceeCCCCCCcccccceee
Confidence 4567999999999999999986554
No 59
>PHA02996 poly(A) polymerase large subunit; Provisional
Probab=49.08 E-value=20 Score=37.87 Aligned_cols=62 Identities=23% Similarity=0.437 Sum_probs=40.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCC---CCceE
Q 013399 87 VQLMTNEGLVPSTEEEDKRRN---VIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSE---SDIDA 160 (444)
Q Consensus 87 ~~~l~~~~~~Ps~ee~~~R~~---vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~---SDID~ 160 (444)
.+.|+++++..-.+....|.. ++..+++++.+.+++ + +-.-..||||.+-+--|+ .|||+
T Consensus 127 ~~~L~synv~~~~~kvmgrh~VSdLV~~V~klmeEyLrr----h----------Nk~CicYGSySlhllNp~I~YgDIDi 192 (467)
T PHA02996 127 RDALNSYNVAVISEKVMGRHNVSDLVGNVNKLMEEYLRR----H----------NKSCICYGSYSLHLLNPEIEYGDIDI 192 (467)
T ss_pred HHHHHhccccCCCccccccccccHHHHHHHHHHHHHHHh----c----------CCceEEeeceeeeecCCccccCCcce
Confidence 356666666644445444544 466666666666543 1 345678999998887765 99998
Q ss_pred Ee
Q 013399 161 LC 162 (444)
Q Consensus 161 v~ 162 (444)
+=
T Consensus 193 lq 194 (467)
T PHA02996 193 LQ 194 (467)
T ss_pred ee
Confidence 63
No 60
>PRK14109 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=44.72 E-value=89 Score=37.15 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=36.6
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCccc----chHHHHHHHHHHHhc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFAT----MAEDFFVVLHNMLKS 184 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~----~~~~ff~~l~~~L~~ 184 (444)
.+.-|...|+++-+=-.++||||++++.+.... ....||..+.+.|.+
T Consensus 214 ~~~aviamGklG~~EL~~~SDiDLi~ly~~~~~~~~~~~~~~~~rl~q~l~~ 265 (1007)
T PRK14109 214 VRLAVIAMGKCGARELNYVSDVDVIFVAEPAEGVDEAAALAVATRLASELMR 265 (1007)
T ss_pred CCeEEEEeccccccccCCccCCCEEEEeCCCCCcccccHHHHHHHHHHHHHH
Confidence 467999999999999999999999999863321 124567777766655
No 61
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=42.54 E-value=14 Score=25.68 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=25.0
Q ss_pred HhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Q 013399 82 RSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKE 114 (444)
Q Consensus 82 ~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~ 114 (444)
.+.+|.++|++.|+..++.. ..|+++++.++.
T Consensus 5 s~~~L~~wL~~~gi~~~~~~-~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSA-KTRDELLKLAKK 36 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHH
Confidence 45689999999998765544 789999888764
No 62
>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair]
Probab=37.32 E-value=65 Score=33.28 Aligned_cols=70 Identities=23% Similarity=0.230 Sum_probs=54.1
Q ss_pred eEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEECCeeecccccc
Q 013399 139 ATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYAC 217 (444)
Q Consensus 139 ~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~gI~vDLsf~~ 217 (444)
.++-.-||.+=|-.+ .+|||++|..... .. +.+.|.+.+++.++.+-.+.+|-++.--..|++||+-++.
T Consensus 181 ~~~~~aGs~RR~ret-v~DiD~~~s~~~~----~~----v~~~~~~~~~~~~vi~~G~~k~s~~~~~~~~~svD~r~v~ 250 (326)
T COG1796 181 IQASIAGSLRRGRET-VGDIDILISTSHP----ES----VLEELLEMPNVQEVIAKGETKVSMLLILDEGTSVDFRVVP 250 (326)
T ss_pred heeeeccchhhcccc-ccceeeEeccCCc----HH----HHHHHhcCCCcceeeecCCceeeEEEEecCCCeeEEEEcC
Confidence 577778999888766 5899997765432 12 4555566788999888889999988888899999998764
No 63
>PRK11072 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Reviewed
Probab=36.49 E-value=1.2e+02 Score=35.97 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=39.5
Q ss_pred HHhCCChhh-hccCCeEEEEecccccCCCCCCCCceEEeecCC-c--------ccchHHHHHHHHHHHhc
Q 013399 125 WQRRLPKEQ-IAETHATILTYGSYGLGVHGSESDIDALCLGPE-F--------ATMAEDFFVVLHNMLKS 184 (444)
Q Consensus 125 ~~~~~~~~~-~~~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~-~--------~~~~~~ff~~l~~~L~~ 184 (444)
.++|.++.. .+..+.-|.-+|.++-+=-.-+||||++.+... . ......||..+.+.|.+
T Consensus 667 ~~~G~p~~~~~~~~~~aViamGKlGg~EL~y~SDlDlifvy~~~~~~~t~g~~~~~~~~~~~rl~qrli~ 736 (943)
T PRK11072 667 KRHGEPPHLEGRERGFAVIGYGKLGGKELGYASDLDLVFLHDCPEDAMTDGDKSIDGRQFYLRLAQRIIH 736 (943)
T ss_pred HHhCCCCCccCCCCCEEEEeecCccCCccCCcccceEEEEeecCccccCCCCCcccHHHHHHHHHHHHHH
Confidence 345665321 112456888888888777788999999999741 1 01135788888887765
No 64
>COG1391 GlnE Glutamine synthetase adenylyltransferase [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms]
Probab=36.19 E-value=2.7e+02 Score=32.91 Aligned_cols=45 Identities=31% Similarity=0.408 Sum_probs=28.6
Q ss_pred EEEEecccccCCCC--CCCCceEEeecCCcccc------hHHHHHHHHHHHhc
Q 013399 140 TILTYGSYGLGVHG--SESDIDALCLGPEFATM------AEDFFVVLHNMLKS 184 (444)
Q Consensus 140 ~l~~FGS~~lGv~~--p~SDID~v~v~p~~~~~------~~~ff~~l~~~L~~ 184 (444)
.+...|=--+|-.. =+||||++.+.|..... ..+||..+.+.|-+
T Consensus 173 ~l~VlgMGKlGa~ELNysSDIDlIf~y~~~~~t~g~~~dn~~fFtRl~qrLIr 225 (963)
T COG1391 173 GLLVLGMGKLGARELNYSSDIDLIFVYPESGPTQGGELDNAEFFTRLGQRLIR 225 (963)
T ss_pred ceEEEeccccCccccccccccceEEEeCCCCCccCCccchHHHHHHHHHHHHH
Confidence 44444444444443 46999999997765432 34688887776654
No 65
>PF12633 Adenyl_cycl_N: Adenylate cyclase NT domain; InterPro: IPR024685 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria. This entry represents the N-terminal domain of class-I adenylate cyclases.
Probab=35.08 E-value=69 Score=31.03 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=27.3
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCccc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFAT 169 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~ 169 (444)
+---||.-||..+=-.++.||+|+=++.....+
T Consensus 96 ~I~GlY~MGS~gSi~Qs~~SDlDiWvCh~~~L~ 128 (204)
T PF12633_consen 96 PILGLYSMGSTGSIGQSSSSDLDIWVCHDSDLS 128 (204)
T ss_pred CeEEEEecCCCccccCCCCCCCeEEEEcCCCCC
Confidence 345799999999999999999999777665444
No 66
>PRK11072 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Reviewed
Probab=32.58 E-value=1.6e+02 Score=34.91 Aligned_cols=48 Identities=31% Similarity=0.311 Sum_probs=35.6
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCc-cc-------chHHHHHHHHHHHhc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEF-AT-------MAEDFFVVLHNMLKS 184 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~-~~-------~~~~ff~~l~~~L~~ 184 (444)
.+..|.-.|-|+-|=-.++||||++++.+.. .+ ....||..+.+.|-+
T Consensus 153 ~~~aViamGKlG~~ELn~~SDIDLifly~~~~~~~~~~~~~~~~~~f~rl~q~li~ 208 (943)
T PRK11072 153 QPLLILGMGKLGGRELNFSSDIDLIFTYPEHGETQGGRRSIDNQQFFTRLGQRLIK 208 (943)
T ss_pred CCEEEEEeccccCccCCCccCCceEEEeCCCCCCCCCcccchHHHHHHHHHHHHHH
Confidence 4678888999988888999999999997632 11 124788877766544
No 67
>PRK05092 PII uridylyl-transferase; Provisional
Probab=31.88 E-value=3.8e+02 Score=31.60 Aligned_cols=30 Identities=40% Similarity=0.564 Sum_probs=27.3
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCC
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPE 166 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~ 166 (444)
.+..|...|+|+-|=-.|.||||++++.+.
T Consensus 104 ~~~alvA~GgyGr~EL~p~SDiDLl~l~~~ 133 (931)
T PRK05092 104 ERLAVLAVGGYGRGELAPGSDIDLLFLLPY 133 (931)
T ss_pred CceEEEEecCcCCcccCCCCCceEEEEeCC
Confidence 357999999999999999999999999874
No 68
>PRK14108 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=30.57 E-value=1.5e+02 Score=35.28 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=34.5
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCcc----c------chHHHHHHHHHHHhc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFA----T------MAEDFFVVLHNMLKS 184 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~----~------~~~~ff~~l~~~L~~ 184 (444)
...-|.-+|-++-+=-.-+||||++.+..... + ....||..+.+.+.+
T Consensus 700 ~~~aViamGKlGg~EL~y~SDlDlifvy~~~~~~~~t~g~~~l~~~~~~~rlaqrli~ 757 (986)
T PRK14108 700 GRVAILAMGKLGSRELTAGSDVDLILLYDFDDDAPESDGEKPLDGAQYFARFTQRLIA 757 (986)
T ss_pred CCEEEEeeCCccccccCCcccceEEEEeecCccccccCCcccchHHHHHHHHHHHHHH
Confidence 45788888888877777899999999973210 0 124688888877665
No 69
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=30.47 E-value=2.9e+02 Score=27.68 Aligned_cols=83 Identities=19% Similarity=0.367 Sum_probs=50.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCceEEee--cCCccc-c
Q 013399 94 GLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCL--GPEFAT-M 170 (444)
Q Consensus 94 ~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDID~v~v--~p~~~~-~ 170 (444)
|..|.+....+|..++..+++.+.+- + ....|||++|. +|.... .
T Consensus 39 GFlP~~TA~HHr~~il~Lv~~al~ea--------~------------------------v~~~diD~icyTKGPGmgaPL 86 (336)
T KOG2708|consen 39 GFLPRDTARHHRAWILGLVKQALEEA--------G------------------------VTSDDIDCICYTKGPGMGAPL 86 (336)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHc--------C------------------------CChhhCCEEEEcCCCCCCCch
Confidence 77888889999999999888888651 1 23579999997 333211 0
Q ss_pred -hHHHHHHHHHHHhcCCCc---------ceeEEeccCceeEEEEEECC
Q 013399 171 -AEDFFVVLHNMLKSRPEV---------SEIHCVKDAKVPLMRFKFDG 208 (444)
Q Consensus 171 -~~~ff~~l~~~L~~~~~v---------~~v~~I~~ArVPIIKf~~~g 208 (444)
.-.........|-+.|-| +-=+.|..|.-|++-....|
T Consensus 87 ~~vaivaRtlsllw~kPlv~VNHCigHIEMGR~iTgA~nPvvLYvSGG 134 (336)
T KOG2708|consen 87 SVVAIVARTLSLLWNKPLVGVNHCIGHIEMGREITGAQNPVVLYVSGG 134 (336)
T ss_pred hhHHHHHHHHHHHhCCCcccchhhhhhhhhcceeccCCCCEEEEEeCC
Confidence 011222223334444422 11256889999998776543
No 70
>PF07357 DRAT: Dinitrogenase reductase ADP-ribosyltransferase (DRAT); InterPro: IPR009953 This family consists of several bacterial dinitrogenase reductase ADP-ribosyltransferase (DRAT) proteins. Members of this family seem to be specific to Rhodospirillum, Rhodobacter and Azospirillum species. Dinitrogenase reductase ADP-ribosyl transferase (DRAT) carries out the transfer of the ADP-ribose from NAD to the Arg-101 residue of one subunit of the dinitrogenase reductase homodimer, resulting in inactivation of that enzyme. Dinitrogenase reductase-activating glycohydrolase (DRAG) removes the ADP-ribose group attached to dinitrogenase reductase, thus restoring nitrogenase activity. The DRAT-DRAG system negatively regulates nitrogenase activity in response to exogenous NH4+ or energy limitation in the form of a shift to darkness or to anaerobic conditions [].
Probab=29.74 E-value=15 Score=36.73 Aligned_cols=34 Identities=32% Similarity=0.531 Sum_probs=24.8
Q ss_pred CCchhhcceeEEEEEeCChhcccceeeeehhhHH
Q 013399 403 PYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFR 436 (444)
Q Consensus 403 ~ff~~y~~yl~i~v~a~~~~~~~~~~G~vESrlr 436 (444)
.|=..|-.+|+==.--+|.-++..++||||||.-
T Consensus 80 r~r~sYLRlLrGW~fDSn~~EGAVLKGWVESRFG 113 (262)
T PF07357_consen 80 RFRASYLRLLRGWGFDSNSPEGAVLKGWVESRFG 113 (262)
T ss_pred chhhhHHHHHhccCcCCCChhhhhhhhhhhhccC
Confidence 3445566666555555678899999999999974
No 71
>PF08986 DUF1889: Domain of unknown function (DUF1889); InterPro: IPR015079 This family consist of hypothetical bacterial proteins. ; PDB: 2JN8_A 2ES9_A.
Probab=28.47 E-value=71 Score=27.49 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=32.4
Q ss_pred CCCChHHHHHhHHHHHHHHhCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 013399 73 SVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNV---IQKLKEIVLAWVKRVA 124 (444)
Q Consensus 73 ~~~~~~d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~v---l~~L~~iv~~w~~~~~ 124 (444)
+.|..+|++.-..+.++|++.|+..++++...|-+- =....+-+-.|.++++
T Consensus 40 s~P~sMdESTAKGi~KyL~elGvPasa~dv~aRg~qeGWn~gFT~k~agwaeki~ 94 (119)
T PF08986_consen 40 SVPHSMDESTAKGIFKYLKELGVPASAADVTARGEQEGWNPGFTEKVAGWAEKIA 94 (119)
T ss_dssp SS--HCCCHHHHHHHHHHHHCT----HHHHHHHHHHCT--HHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHHHHHHcCCCCCHHHHHHhcccccCChhHHHHHHHHHHHHh
Confidence 445567888888999999999999999999888542 1233444556766654
No 72
>PF03281 Mab-21: Mab-21 protein
Probab=27.63 E-value=2.3e+02 Score=28.08 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=62.6
Q ss_pred ccchhHHHHHHHHHHHHhccCCCcCcccchHHHHHHHHHHHHhCCCC------CHHHHHHHHHHhhccCCCCCceeecCC
Q 013399 262 LEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKG------SLNTLVANFFKTYAYWPWPTPVMLQDP 335 (444)
Q Consensus 262 ~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~alLva~~~Ql~P~~------sl~~LL~~FF~~Ys~fdw~~pV~l~~g 335 (444)
....+.+++++|.-.++.. ...+.|++|++-.++.+.|..+|.. .+++.+.+.+...-. .+..+
T Consensus 190 ~~~~~~~l~llk~l~~~~~---~~~~~l~syhLkt~ll~~~~~~p~~~~W~~~~l~~~l~~~l~~L~~-------~L~~~ 259 (292)
T PF03281_consen 190 NGCRKKCLRLLKALRDRHL---TNLSGLSSYHLKTVLLWLCEKHPSSSDWSEENLGERLLDLLDFLIK-------CLQEG 259 (292)
T ss_pred cccHHHHHHHHHHHHHhcc---ccCCCccHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHH-------HHhcC
Confidence 4456789999999877776 5678899999999999999999874 345555554444321 11122
Q ss_pred CCCCCCCCCCCCCcceeeCCCCCCCcccCCCChhhHHHHHHHHHH
Q 013399 336 MLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLR 380 (444)
Q Consensus 336 ~~~~~~~~~~~~~~m~IitP~~P~~N~a~nVs~st~~~I~~Ef~r 380 (444)
.. -.-+.|..|.=.+.+..++..+.+++.+
T Consensus 260 ~L---------------phff~~~~NLf~~~~~~~~~~~~~~~~~ 289 (292)
T PF03281_consen 260 RL---------------PHFFIPNLNLFQHLSPEELDELARKLER 289 (292)
T ss_pred CC---------------CccCCCCcccCCCCCHHHHHHHHHHHHH
Confidence 11 1234457887777887777776665554
No 73
>PRK14108 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=27.15 E-value=4e+02 Score=31.84 Aligned_cols=48 Identities=33% Similarity=0.386 Sum_probs=35.7
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCcc-c-----chHHHHHHHHHHHhc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFA-T-----MAEDFFVVLHNMLKS 184 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~-~-----~~~~ff~~l~~~L~~ 184 (444)
.+.-|.-.|-|+-+==.++||||++++.+... + ....||..+.+.|-+
T Consensus 185 ~~~aViamGklGg~ELn~~SDiDLifly~~~~~~~~~~~~~~~~~~rl~q~li~ 238 (986)
T PRK14108 185 SGLIVLGMGKLGAGELNYSSDIDLIVFFDETAPILGDPIEAQPFFVRLTRRLVR 238 (986)
T ss_pred CCeEEEeeccccccccCCCCCCceEEEeCCCCCCccccchHHHHHHHHHHHHHH
Confidence 46789999999999999999999999976321 1 124678777765544
No 74
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal io
Probab=20.90 E-value=6e+02 Score=22.58 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=42.5
Q ss_pred CeEEEEecccc----cCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEec-cCceeEEEEEECCeeec
Q 013399 138 HATILTYGSYG----LGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVK-DAKVPLMRFKFDGILID 212 (444)
Q Consensus 138 ~~~l~~FGS~~----lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~-~ArVPIIKf~~~gI~vD 212 (444)
+.+++..|-++ +| .+..|||+++.++. ..+...+.+.+ +.. .|. ..+-+++++...|..+|
T Consensus 16 g~~~ylVGG~VRD~Llg--~~~~DiDi~v~~~~-----~~~~~~l~~~~----~~~---~v~~~~~f~t~~v~~~~~~~d 81 (139)
T cd05398 16 GYEAYLVGGAVRDLLLG--RPPKDIDIATDADG-----PEFAEALFKKI----GGR---VVGLGEEFGTATVVINGLTID 81 (139)
T ss_pred CceEEEECChHHHHHcC--CCCCCceEEEeCCC-----HHHHHHHHHhc----CCc---EEecCCcccEEEEEECCEEEE
Confidence 67889988874 44 47899999887742 13333332221 111 222 35566777788899999
Q ss_pred cccccc
Q 013399 213 LPYACL 218 (444)
Q Consensus 213 Lsf~~~ 218 (444)
++-.+.
T Consensus 82 i~~~R~ 87 (139)
T cd05398 82 VATLRT 87 (139)
T ss_pred Eccccc
Confidence 988775
Done!