Query 013399
Match_columns 444
No_of_seqs 195 out of 749
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 09:51:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 2.9E-94 9.9E-99 762.7 37.1 385 56-444 15-407 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 1.3E-90 4.3E-95 737.2 36.3 376 68-444 11-395 (530)
3 4fh3_A Poly(A) RNA polymerase 100.0 2.4E-52 8.3E-57 422.2 25.5 260 94-401 26-348 (349)
4 4e8f_A Poly(A) RNA polymerase 100.0 3.1E-51 1.1E-55 423.8 27.1 279 79-407 41-382 (405)
5 3nyb_A Poly(A) RNA polymerase 100.0 1.1E-51 3.7E-56 415.6 21.5 268 73-388 12-299 (323)
6 2ikf_A RNA uridylyl transferas 100.0 1.4E-50 4.8E-55 411.8 18.3 264 74-385 22-348 (353)
7 2b4v_A RNA editing complex pro 100.0 1.6E-43 5.5E-48 371.3 21.3 303 64-390 4-442 (468)
8 3hj4_A Minor editosome-associa 100.0 5.6E-43 1.9E-47 357.4 19.4 274 80-403 5-381 (384)
9 3pq1_A Poly(A) RNA polymerase; 100.0 2E-40 6.9E-45 346.5 24.5 250 82-402 134-460 (464)
10 1r89_A TRNA nucleotidyltransfe 99.4 2.3E-12 7.8E-17 133.7 18.8 232 85-381 6-245 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.2 1.3E-09 4.5E-14 110.0 20.6 285 85-387 10-329 (349)
12 4at7_A Interleukin enhancer-bi 98.2 0.00017 5.8E-09 72.8 21.7 265 77-385 22-295 (364)
13 4at7_B NF90, interleukin enhan 97.8 0.0033 1.1E-07 63.9 22.2 265 94-386 22-328 (383)
14 1no5_A Hypothetical protein HI 97.6 0.00024 8.4E-09 60.1 9.1 45 138-184 27-71 (114)
15 1wot_A Putative minimal nucleo 97.2 0.00048 1.6E-08 56.8 6.2 48 107-167 7-54 (98)
16 2rff_A Putative nucleotidyltra 97.2 0.00036 1.2E-08 59.2 4.8 54 102-167 9-62 (111)
17 1ylq_A Putative nucleotidyltra 97.1 0.00035 1.2E-08 57.4 4.2 28 139-166 18-46 (96)
18 4ebj_A Aminoglycoside nucleoti 95.6 0.014 4.8E-07 56.3 5.9 29 139-167 41-69 (272)
19 1kny_A Kntase, kanamycin nucle 95.1 0.023 7.9E-07 54.4 5.7 29 139-167 32-60 (253)
20 2fmp_A DNA polymerase beta; nu 94.1 0.24 8.1E-06 49.6 10.5 117 137-288 171-298 (335)
21 2bcq_A DNA polymerase lambda; 92.8 0.28 9.6E-06 49.1 8.4 116 137-288 168-292 (335)
22 3jz0_A Lincosamide nucleotidyl 91.6 0.32 1.1E-05 47.7 7.0 103 94-219 13-116 (287)
23 2ihm_A POL MU, DNA polymerase 90.6 0.43 1.5E-05 48.2 7.0 51 137-189 175-225 (360)
24 1jaj_A DNA polymerase beta-lik 89.7 0.31 1.1E-05 44.4 4.6 110 135-288 28-142 (174)
25 1jms_A Terminal deoxynucleotid 88.9 1.9 6.4E-05 43.9 10.2 52 137-189 195-247 (381)
26 3b0x_A DNA polymerase beta fam 88.6 2.6 8.7E-05 44.9 11.6 108 137-289 179-286 (575)
27 1v4a_A Glutamate-ammonia-ligas 78.1 3.9 0.00013 42.2 7.2 48 137-184 153-208 (440)
28 3k7d_A Glutamate-ammonia-ligas 69.6 11 0.00038 39.5 8.1 48 137-184 233-289 (498)
29 2fcl_A Hypothetical protein TM 62.9 19 0.00066 32.1 7.3 71 137-216 32-107 (169)
30 2pbe_A AAD6, aminoglycoside 6- 48.0 21 0.0007 34.7 5.3 73 139-219 24-110 (294)
31 2es9_A Putative cytoplasmic pr 47.6 37 0.0013 27.8 5.8 57 68-124 23-82 (115)
32 2w9m_A Polymerase X; SAXS, DNA 35.5 42 0.0014 35.6 5.6 94 141-289 182-276 (578)
33 3er9_B Poly(A) polymerase cata 23.2 67 0.0023 32.8 4.2 61 88-162 140-207 (479)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=2.9e-94 Score=762.70 Aligned_cols=385 Identities=34% Similarity=0.633 Sum_probs=360.2
Q ss_pred CCCCcccCCCCCCCCCCCCCChHHHHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhc
Q 013399 56 CNSPVFLVPSFNFPLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIA 135 (444)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~~~~~~d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~ 135 (444)
+.+.+.++..| ++.+.|++.|++.+++|+++|++++++||+||.++|++|+++|++++++|+++++.++|++++.+.
T Consensus 15 ~~~~~~g~~~p---is~~~p~~~d~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~ 91 (514)
T 1q79_A 15 PPQKHYGITSP---ISLAAPKETDALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIE 91 (514)
T ss_dssp ----CCSSSCC---SCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred CcccccCCCCC---CcCCCCCHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcc
Confidence 34556666555 666778899999999999999999999999999999999999999999999999999999999888
Q ss_pred cCCeEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEECCeeecccc
Q 013399 136 ETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPY 215 (444)
Q Consensus 136 ~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~gI~vDLsf 215 (444)
.++++|++||||++|+++|+||||++|++|.+++ +++||..++++|++.++++++++|++|+||||||+++||+|||+|
T Consensus 92 ~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~-~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f 170 (514)
T 1q79_A 92 NVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVD-RSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILF 170 (514)
T ss_dssp TCBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSC-HHHHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEE
T ss_pred cCCceEEEeeeeccCCCCCCCceeEEEecCCcCC-HHHHHHHHHHHHhcCccCceEEEecCCcccEEEEEECCeeEEEEE
Confidence 8999999999999999999999999999999987 579999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccccCCCchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHH
Q 013399 216 ACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLA 295 (444)
Q Consensus 216 ~~~~~~~~p~~~~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~a 295 (444)
++++...+|+++++.|+++|+++|+.+++|+||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+
T Consensus 171 ~~~~~~~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~ 250 (514)
T 1q79_A 171 ARLALQTIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWA 250 (514)
T ss_dssp EECSCSSBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHH
T ss_pred ecCCcccCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhhccCCCCCceeecCCC-----CCCCCCCC---CCCCcceeeCCCCCCCcccCCCC
Q 013399 296 ILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPM-----LPAAGYPS---ETRSLMPIRLPCSPHEYCHSNIT 367 (444)
Q Consensus 296 lLva~~~Ql~P~~sl~~LL~~FF~~Ys~fdw~~pV~l~~g~-----~~~~~~~~---~~~~~m~IitP~~P~~N~a~nVs 367 (444)
|||+++||+||++++++||.+||++||+|||++||.++... .+.|++.. +..|.|||+||++|.+|+|+||+
T Consensus 251 lLVa~~~Ql~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs 330 (514)
T 1q79_A 251 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVS 330 (514)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCC
Confidence 99999999999999999999999999999999999975331 23454321 12478999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCCCCcccccCcCCCchhhcceeEEEEEeCChhcccceeeeehhhHHHHHHhhcC
Q 013399 368 RSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLILKVSR 444 (444)
Q Consensus 368 ~st~~~I~~Ef~rA~~il~~i~~~~~~W~~L~~~~~ff~~y~~yl~i~v~a~~~~~~~~~~G~vESrlr~Lv~~LE~ 444 (444)
++|+++|++||+||+++++++..++.+|++||+|++||.+|++||+|+++|.+++++.+|.||||||||.|+.+||+
T Consensus 331 ~st~~~I~~Ef~rA~~il~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~ 407 (514)
T 1q79_A 331 VSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEK 407 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=1.3e-90 Score=737.17 Aligned_cols=376 Identities=35% Similarity=0.584 Sum_probs=356.1
Q ss_pred CCCCCCCCChHHHHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEeccc
Q 013399 68 FPLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSY 147 (444)
Q Consensus 68 ~~l~~~~~~~~d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~ 147 (444)
.|++.+.|++.|++.+++|+++|++++++||+||.++|++|+++|++++++|+++++.++|++++.++..+++|++||||
T Consensus 11 ~pis~~~p~~~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~V~~FGSy 90 (530)
T 2hhp_A 11 GPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSY 90 (530)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEEEEEHHH
T ss_pred CCCcCCCCChHHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCceEEEeccc
Confidence 34677788899999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred ccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEECCeeeccccccccccCCCccc
Q 013399 148 GLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENV 227 (444)
Q Consensus 148 ~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~gI~vDLsf~~~~~~~~p~~~ 227 (444)
++|+++|+||||++|++|.+++ +++||..++++|++.++++++++|++|+||||||+++||+|||+|++++..++|+++
T Consensus 91 ~lG~~~p~SDID~~v~~p~~~~-~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~~ip~~l 169 (530)
T 2hhp_A 91 RLGVHGPGSDIDTLVVVPKHVT-REDFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSL 169 (530)
T ss_dssp HHTCCCTTCCEEEEEEECTTCC-HHHHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSSSCBCTTC
T ss_pred ccCCCCCCCceeEEEecCCcCC-HHHHHHHHHHHHhcCCCCceEEEecCCcccEEEEEECCEeeEEEEeccccccCCccc
Confidence 9999999999999999999887 579999999999998999999999999999999999999999999999888999999
Q ss_pred cCCCchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHHHHHHHHHHhCCC
Q 013399 228 DVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPK 307 (444)
Q Consensus 228 ~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~alLva~~~Ql~P~ 307 (444)
++.++.+|+++|+.+++|+||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+|||+++||+||+
T Consensus 170 ~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~P~ 249 (530)
T 2hhp_A 170 TLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPN 249 (530)
T ss_dssp CSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHSTT
T ss_pred CCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccCCCCCceeecCC---C--CCCCCCC---CCCCCcceeeCCCCCCCcccCCCChhhHHHHHHHHH
Q 013399 308 GSLNTLVANFFKTYAYWPWPTPVMLQDP---M--LPAAGYP---SETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFL 379 (444)
Q Consensus 308 ~sl~~LL~~FF~~Ys~fdw~~pV~l~~g---~--~~~~~~~---~~~~~~m~IitP~~P~~N~a~nVs~st~~~I~~Ef~ 379 (444)
+++++||.+||++||+|||++||++... . .+.|.+. .+.++.|||+||++|.+|+|+|||++|+++|++||+
T Consensus 250 ~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~ 329 (530)
T 2hhp_A 250 ACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFV 329 (530)
T ss_dssp CCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHHHHHHHHH
Confidence 9999999999999999999999998642 1 1345432 112589999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcccccCcCCCchhhcceeEEEEEeC-ChhcccceeeeehhhHHHHHHhhcC
Q 013399 380 RGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSAS-NQDDLGDWVGWVKSRFRSLILKVSR 444 (444)
Q Consensus 380 rA~~il~~i~~~~~~W~~L~~~~~ff~~y~~yl~i~v~a~-~~~~~~~~~G~vESrlr~Lv~~LE~ 444 (444)
||+++|++++.++.+|++||+|++||.+|+|||+|++++. +++++..|.||||||+|.|+.+||+
T Consensus 330 rA~~ll~~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~ 395 (530)
T 2hhp_A 330 RGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV 395 (530)
T ss_dssp HHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhc
Confidence 9999999999889999999999999999999999999998 9999999999999999999999995
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=2.4e-52 Score=422.21 Aligned_cols=260 Identities=18% Similarity=0.275 Sum_probs=219.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCceEEeecCCcccchHH
Q 013399 94 GLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAED 173 (444)
Q Consensus 94 ~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ 173 (444)
.+.||+||.++|++++++|+++++++. ++++|++|||+++|+++|+||||++|+.|.... .+.
T Consensus 26 ~~~pt~~e~~~R~~~~~~l~~~i~~~~----------------p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~-~~~ 88 (349)
T 4fh3_A 26 EIKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELVAFGSLESGLALKNSDMDLCVLMDSRVQ-SDT 88 (349)
T ss_dssp HHBCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCEEEEESHHHHTCCBSSCCEEEEEECCTTSC-HHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEEeeccCCCCCCCCCEEEEEecCCCCC-hHH
Confidence 467999999999999999999998632 579999999999999999999999999998776 456
Q ss_pred HHHHHHHHHhcCCCcceeEEeccCceeEEEEEE-------CCeeeccccccccccCCCccccCCCchhccccchhhhhhc
Q 013399 174 FFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKF-------DGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSL 246 (444)
Q Consensus 174 ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~-------~gI~vDLsf~~~~~~~~p~~~~~~~~~~L~~ld~~s~~sl 246 (444)
++..+.+.+.+. ..+++.|.+||||||||++ .|++||++|++ .
T Consensus 89 ~~~~~~~~~~~~--~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~----------------------------~ 138 (349)
T 4fh3_A 89 IALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNN----------------------------R 138 (349)
T ss_dssp HHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESC----------------------------H
T ss_pred HHHHHHHHHHhh--cccceEeeeeeeeeEEEEecccccccccceeecCcCc----------------------------c
Confidence 666666655542 3577889999999999987 37899999886 3
Q ss_pred chhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHHHHHHHHHHhC------CC-------------
Q 013399 247 SGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNH------PK------------- 307 (444)
Q Consensus 247 nG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~alLva~~~Ql~------P~------------- 307 (444)
+|++++++|.++++.+++||+++++||+|||+||||+++.|+||||+|+|||++|||.. |+
T Consensus 139 ~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~ 218 (349)
T 4fh3_A 139 LAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVD 218 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEET
T ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhcccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999953 22
Q ss_pred -------------------CCHHHHHHHHHHhhc-cCCCCCcee-ecCCCC------CCCCC----------CCCCCCcc
Q 013399 308 -------------------GSLNTLVANFFKTYA-YWPWPTPVM-LQDPML------PAAGY----------PSETRSLM 350 (444)
Q Consensus 308 -------------------~sl~~LL~~FF~~Ys-~fdw~~pV~-l~~g~~------~~~~~----------~~~~~~~m 350 (444)
.++++||.+||+||| +|||.+.++ ++.++. +.|.. ....++.|
T Consensus 219 ~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l 298 (349)
T 4fh3_A 219 GFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYIL 298 (349)
T ss_dssp TEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC---------------CCSS
T ss_pred CcccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccCcccccCCCCceE
Confidence 379999999999999 799998765 444321 11211 11124789
Q ss_pred eeeCCCCCCCcccCCCChhhHHHHHHHHHHHHHHHHhhcCCCCCcccccCc
Q 013399 351 PIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEP 401 (444)
Q Consensus 351 ~IitP~~P~~N~a~nVs~st~~~I~~Ef~rA~~il~~i~~~~~~W~~L~~~ 401 (444)
+|+||++|.+|+|++|+..++..|++||+||+++|++.. .+.+|++||+.
T Consensus 299 ~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~-~~~~~~~lfe~ 348 (349)
T 4fh3_A 299 AIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS-YPIPYDSLFEE 348 (349)
T ss_dssp CBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS-SSCCGGGGGSC
T ss_pred EEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc-cCCCHHHHhhc
Confidence 999999999999999999999999999999999998643 34689999986
No 4
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=3.1e-51 Score=423.77 Aligned_cols=279 Identities=18% Similarity=0.266 Sum_probs=237.9
Q ss_pred HHHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCc
Q 013399 79 DEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDI 158 (444)
Q Consensus 79 d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDI 158 (444)
-.++++++.++++ .+.||+||.++|++++++|+++++++. ++++|++|||+++|+++|+|||
T Consensus 41 ~~~L~~~i~~~~~--~i~Pt~eE~~~R~~v~~~l~~~i~~~~----------------p~~~v~~fGS~~~G~~~~~SDi 102 (405)
T 4e8f_A 41 HKEFTKFCYEVYN--EIKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELVAFGSLESGLALKNSDM 102 (405)
T ss_dssp CHHHHHHHHHHHH--HHBCCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEEEESHHHHTCCBSSCCE
T ss_pred HHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEEeeccCCCCCCCCCE
Confidence 4577889999998 588999999999999999999999753 5789999999999999999999
Q ss_pred eEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEE---C----CeeeccccccccccCCCccccCCC
Q 013399 159 DALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKF---D----GILIDLPYACLHVLSVPENVDVLN 231 (444)
Q Consensus 159 D~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~---~----gI~vDLsf~~~~~~~~p~~~~~~~ 231 (444)
|++++.|.... .++++..+.+.|++. ..+++.|.+||||||||++ + ||+|||+|++.
T Consensus 103 Dl~v~~~~~~~-~~~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~------------- 166 (405)
T 4e8f_A 103 DLCVLMDSRVQ-SDTIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNR------------- 166 (405)
T ss_dssp EEEEECCC----CTTHHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCH-------------
T ss_pred EEEEEecCCCC-HHHHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeeccc-------------
Confidence 99999987544 246888899999885 5688999999999999994 4 99999999863
Q ss_pred chhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHHHHHHHHH-HhC-----
Q 013399 232 PFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVC-QNH----- 305 (444)
Q Consensus 232 ~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~alLva~~~-Ql~----- 305 (444)
+|++.+.+|..+...+++||+|+++||+|||+||||+++.|+||||+|+|||++|| |..
T Consensus 167 ---------------~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvl 231 (405)
T 4e8f_A 167 ---------------LAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVF 231 (405)
T ss_dssp ---------------HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSS
T ss_pred ---------------chHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcC
Confidence 58889999998888899999999999999999999999999999999999999999 632
Q ss_pred CC--------------------------------CCHHHHHHHHHHhhc-cCCCCCcee-ec-CCCC-----CCCCCC--
Q 013399 306 PK--------------------------------GSLNTLVANFFKTYA-YWPWPTPVM-LQ-DPML-----PAAGYP-- 343 (444)
Q Consensus 306 P~--------------------------------~sl~~LL~~FF~~Ys-~fdw~~pV~-l~-~g~~-----~~~~~~-- 343 (444)
|+ .++++||.+||+||| +|||.+.++ ++ .|.. +.|...
T Consensus 232 P~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~g~~~~K~~k~w~~~~~ 311 (405)
T 4e8f_A 232 PNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATE 311 (405)
T ss_dssp CCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSSTTCCCBHHHHTCCC---
T ss_pred CchhhcccccccccCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEEEecCCccccccccccccccc
Confidence 21 479999999999999 899998655 65 4432 234332
Q ss_pred --------CCCCCcceeeCCCCCCCcccCCCChhhHHHHHHHHHHHHHHHHhhcCCCCCcccccCcCCCchh
Q 013399 344 --------SETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKK 407 (444)
Q Consensus 344 --------~~~~~~m~IitP~~P~~N~a~nVs~st~~~I~~Ef~rA~~il~~i~~~~~~W~~L~~~~~ff~~ 407 (444)
...++.|+|+||++|.+|+|++|+..+++.|++||+||+++|++... +.+|++||+++++..+
T Consensus 312 ~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~-~~~w~~Lf~~~~~~~~ 382 (405)
T 4e8f_A 312 HTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY-PIPYDSLFEEAPIPPR 382 (405)
T ss_dssp ----------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS-SCCGGGGGSCCCCC--
T ss_pred ccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc-CCCHHHHhCcCCCccc
Confidence 11357899999999999999999999999999999999999986533 5789999999999875
No 5
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-51 Score=415.64 Aligned_cols=268 Identities=21% Similarity=0.305 Sum_probs=232.7
Q ss_pred CCCChHHHHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCC
Q 013399 73 SVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVH 152 (444)
Q Consensus 73 ~~~~~~d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~ 152 (444)
+...+.-.++++||.++++ .+.||+||.++|++++++|+++++++. ++++|++|||+++|++
T Consensus 12 ~~~~~~~~~L~~Ei~~f~~--~i~Pt~eE~~~R~~~~~~l~~~~~~~~----------------p~~~v~~fGS~~~g~~ 73 (323)
T 3nyb_A 12 SKQKEISDWLTFEIKDFVA--YISPSREEIEIRNQTISTIREAVKQLW----------------PDADLHVFGSYSTDLY 73 (323)
T ss_dssp TTCSSHHHHHHHHHHHHHH--HTSCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCCEEEESTTTTTCC
T ss_pred cccchHHHHHHHHHHHHHH--HhCcCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEeCccccCCC
Confidence 3334455678999999998 588999999999999999999998642 4689999999999999
Q ss_pred CCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEE--CCeeeccccccccccCCCccccCC
Q 013399 153 GSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKF--DGILIDLPYACLHVLSVPENVDVL 230 (444)
Q Consensus 153 ~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~--~gI~vDLsf~~~~~~~~p~~~~~~ 230 (444)
+|+||||++++.|.......+++..+.+.|++.+.+++++.|.+||||||||++ +|++|||+|++.
T Consensus 74 ~~~SDiDl~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~------------ 141 (323)
T 3nyb_A 74 LPGSDIDCVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERT------------ 141 (323)
T ss_dssp CTTSCEEEEECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCS------------
T ss_pred CCCCCceEEEecCCCChhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecCc------------
Confidence 999999999999876532346888999999998888999999999999999996 799999999863
Q ss_pred CchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHHHHHHHHHHhCCC---
Q 013399 231 NPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPK--- 307 (444)
Q Consensus 231 ~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~alLva~~~Ql~P~--- 307 (444)
+|++++++|.++++.+++||+++++||+|||+||||+++.|+||||+|++||+++||++|+
T Consensus 142 ----------------~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~ 205 (323)
T 3nyb_A 142 ----------------NGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIIT 205 (323)
T ss_dssp ----------------STTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHT
T ss_pred ----------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCc
Confidence 6999999999999999999999999999999999999999999999999999999999975
Q ss_pred ------CCHHHHHHHHHHhhc-cCCCCCc-eeecCCCC-----CCCCC--CCCCCCcceeeCCCCCCCcccCCCChhhHH
Q 013399 308 ------GSLNTLVANFFKTYA-YWPWPTP-VMLQDPML-----PAAGY--PSETRSLMPIRLPCSPHEYCHSNITRSTFY 372 (444)
Q Consensus 308 ------~sl~~LL~~FF~~Ys-~fdw~~p-V~l~~g~~-----~~~~~--~~~~~~~m~IitP~~P~~N~a~nVs~st~~ 372 (444)
.++|+||.+||+||| +|||++. |.+++|++ ..|.. ..+..+.|+|+||++|.+|+|++. .+++
T Consensus 206 ~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~~~~~~k~~~~~~~~~~~~~~l~IeDP~~~~~nigr~~--~~~~ 283 (323)
T 3nyb_A 206 NEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGYPVYFPKSTWSAIQPIKNPFSLAIQDPGDESNNISRGS--FNIR 283 (323)
T ss_dssp TCBCGGGCHHHHHHHHHHHHHHTCCTTTEEEEESSSCEEEEEGGGCGGGCSCSCSSSCCBEETTEEEEETTTTC--TTHH
T ss_pred ccCCccccHHHHHHHHHHHhccccCCCCcEEEEecCCcceeeHHhcccccccCCCceEEEeCCCCCCcccccch--HHHH
Confidence 478999999999999 9999985 55776642 12321 112247899999999999999985 4588
Q ss_pred HHHHHHHHHHHHHHhh
Q 013399 373 KIRTEFLRGHNTTRDL 388 (444)
Q Consensus 373 ~I~~Ef~rA~~il~~i 388 (444)
.|++||++|+++|++-
T Consensus 284 ~I~~~F~~A~~~L~~~ 299 (323)
T 3nyb_A 284 DIKKAFAGAFDLLTNR 299 (323)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999764
No 6
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=1.4e-50 Score=411.76 Aligned_cols=264 Identities=18% Similarity=0.207 Sum_probs=220.2
Q ss_pred CCChHHHHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccc-cCCC
Q 013399 74 VLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYG-LGVH 152 (444)
Q Consensus 74 ~~~~~d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~-lGv~ 152 (444)
-|++.+ .+++|++++++ ..|+.+|.++|++++++|++++++.. ++++|++|||++ +|++
T Consensus 22 ~P~~~~--l~~~l~~~~~~--~~~~~~e~~~r~~~~~~l~~~i~~~~----------------p~~~v~~FGS~~vtGl~ 81 (353)
T 2ikf_A 22 PPSPAV--VGRSLVNSFKQ--FVSKDLHTRHVDATYRLVLDCVAAVD----------------PLMRLYTFGSTVVYGVH 81 (353)
T ss_dssp -CCHHH--HHHHHHHHTTT--TCC-----CCHHHHHHHHHHHHHHHC----------------TTCEEEEESHHHHHSSC
T ss_pred CCCHHH--HHHHHHHHHHH--hcCChhhHHHHHHHHHHHHHHHHHHC----------------CCcEEEEecCccccCCC
Confidence 344555 47899999984 56889999999999999999998631 579999999997 9999
Q ss_pred CCCCCceEEeecCCccc--------------chHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEE-CCeeecccccc
Q 013399 153 GSESDIDALCLGPEFAT--------------MAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKF-DGILIDLPYAC 217 (444)
Q Consensus 153 ~p~SDID~v~v~p~~~~--------------~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~-~gI~vDLsf~~ 217 (444)
+|+||||++|+.|...+ ...+++..+.+.|++.+.+.+++.|.+||||||||++ .||+|||+|++
T Consensus 82 lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~~~~i~~Dis~~n 161 (353)
T 2ikf_A 82 EKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKGGGAVDFDITAYR 161 (353)
T ss_dssp CTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEECSSSCEEEEEESC
T ss_pred CCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEcCCCcEEEEEecC
Confidence 99999999998874221 0146788889999987778899999999999999998 69999999986
Q ss_pred ccccCCCccccCCCchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcC-cccchHHHHH
Q 013399 218 LHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLH-GFLGGVHLAI 296 (444)
Q Consensus 218 ~~~~~~p~~~~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~-G~Lgg~s~al 296 (444)
. +|++++++|..++..+++||+++++||+|||+||||+++. |+||||+|++
T Consensus 162 ~----------------------------~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~~gG~lssy~l~l 213 (353)
T 2ikf_A 162 R----------------------------NGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNL 213 (353)
T ss_dssp C----------------------------HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTSTTCCBCHHHHHH
T ss_pred c----------------------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCCCCCCchHHHHHH
Confidence 3 6999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHhC------C------------------------CCCHHHHHHHHHHhhc-cCCCCCcee-ecCCCC-----CC
Q 013399 297 LVAHVCQNH------P------------------------KGSLNTLVANFFKTYA-YWPWPTPVM-LQDPML-----PA 339 (444)
Q Consensus 297 Lva~~~Ql~------P------------------------~~sl~~LL~~FF~~Ys-~fdw~~pV~-l~~g~~-----~~ 339 (444)
||++|||.. | +.++++||.+||+||+ +|||.++++ ++.|+. ..
T Consensus 214 mvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~~~~k~~~~ 293 (353)
T 2ikf_A 214 MVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISLNRPGITTKEELD 293 (353)
T ss_dssp HHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECSSSSSCEEHHHHT
T ss_pred HHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEcCCCcceechhhc
Confidence 999999853 2 2468999999999999 899999755 655542 23
Q ss_pred CCCC---------CCCCCcceeeCCCCCCCcccCCCChhhHHHHHHHHHHHHHHH
Q 013399 340 AGYP---------SETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTT 385 (444)
Q Consensus 340 ~~~~---------~~~~~~m~IitP~~P~~N~a~nVs~st~~~I~~Ef~rA~~il 385 (444)
|... ...++.|+|+||++|.+|+|++|+.++++.|++||+||++++
T Consensus 294 w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 294 WTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTA 348 (353)
T ss_dssp CSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTT
T ss_pred ccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 4310 112478999999999999999999999999999999999876
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=1.6e-43 Score=371.29 Aligned_cols=303 Identities=17% Similarity=0.219 Sum_probs=214.7
Q ss_pred CCCCCCCCCCCCChHHH--HHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEE
Q 013399 64 PSFNFPLNPSVLDQMDE--ERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATI 141 (444)
Q Consensus 64 ~~~~~~l~~~~~~~~d~--~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l 141 (444)
+.|...++++ .|+ .....+.+...+ .-+++++.+.|++++++|++++++|. ++++|
T Consensus 4 ~~~~~~~~~~----~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~l~~~v~~~~----------------p~a~v 61 (468)
T 2b4v_A 4 SLPSTKLNPS----PDHYAVWGKAIMAENNR--RVGPEHMFRTAIRAQQQLQGLADKWT----------------PDAKV 61 (468)
T ss_dssp -------CCC----HHHHHHHHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEE
T ss_pred CCCCccCCCC----hHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEE
Confidence 3466666665 232 234455555443 33789999999999999999999874 68999
Q ss_pred EEeccc-ccCCCCCCCCceEEeecCCcccc-hHHHH--HHHHHHHhcC-CC--cceeEEeccCceeEEEEEEC-------
Q 013399 142 LTYGSY-GLGVHGSESDIDALCLGPEFATM-AEDFF--VVLHNMLKSR-PE--VSEIHCVKDAKVPLMRFKFD------- 207 (444)
Q Consensus 142 ~~FGS~-~lGv~~p~SDID~v~v~p~~~~~-~~~ff--~~l~~~L~~~-~~--v~~v~~I~~ArVPIIKf~~~------- 207 (444)
++|||+ .+|+++|+||||++|+.+..... ..... .++.+.|++. ++ +.++++|.+||||||||++.
T Consensus 62 ~~FGS~v~~Gl~lp~SDiDl~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~ 141 (468)
T 2b4v_A 62 YCCGSMVTYGQMERGSDLDLACMFDDPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVAR 141 (468)
T ss_dssp EEETHHHHHSSCBTTCCEEEEEECSSSSCCHHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHH
T ss_pred EEeeCchhcCCCCCCCceeEEEecCCCCccchhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEecccccccc
Confidence 999999 79999999999999997632211 11111 2478889886 45 57899999999999999821
Q ss_pred ---------------------------------------------------C--eeecccccccc-----ccCCCccccC
Q 013399 208 ---------------------------------------------------G--ILIDLPYACLH-----VLSVPENVDV 229 (444)
Q Consensus 208 ---------------------------------------------------g--I~vDLsf~~~~-----~~~~p~~~~~ 229 (444)
| ..+|++|.+.. ....|+. .+
T Consensus 142 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~-~~ 220 (468)
T 2b4v_A 142 ARYTPLSEEEDRKARTALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDG-KI 220 (468)
T ss_dssp HHHSCCCHHHHHHHTEEEEEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCS-SS
T ss_pred ccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccceeecccccchhhhhcccccc-cc
Confidence 2 22456766521 0111211 01
Q ss_pred CCch-----hccccc------------hhhhhhcchhhhHHHHHHHcCCccc-hhHHHHHHHHHHHHhccCCCcCcccch
Q 013399 230 LNPF-----FLRDLD------------ETSWKSLSGVRANKCILQLVPDLEK-FQPVLRCIKLWAKRRGVYGNLHGFLGG 291 (444)
Q Consensus 230 ~~~~-----~L~~ld------------~~s~~slnG~R~~~~I~~~vp~~~~-Fr~llr~IK~WAk~RgI~~~~~G~Lgg 291 (444)
.... .+..+| +.|.. .+|++++++|..+...+++ ||+|+++||+|||+||||+++.|+|||
T Consensus 221 ~~~~~r~~~~~~~ld~rf~~~~~gi~~DISfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsS 299 (468)
T 2b4v_A 221 MTRGMREDYTRDVLDVRFVPEMFMYRWDISFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTS 299 (468)
T ss_dssp SCGGGGGGEEEEESCTTSCCGGGSSCEEEESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCH
T ss_pred cccccccccccccccccccccccceEEEEecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccH
Confidence 0000 000111 12344 6899999999999888899 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-----------------C------------CCHHHHHHHHHHhhc-cCCCCCcee-ecCCCC---
Q 013399 292 VHLAILVAHVCQNHP-----------------K------------GSLNTLVANFFKTYA-YWPWPTPVM-LQDPML--- 337 (444)
Q Consensus 292 ~s~alLva~~~Ql~P-----------------~------------~sl~~LL~~FF~~Ys-~fdw~~pV~-l~~g~~--- 337 (444)
|+|+|||++|+|... + .++++||.+||+||| +|||.+.++ ++.|+.
T Consensus 300 Yal~lMVI~fLQ~~~~lP~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g~~~~K 379 (468)
T 2b4v_A 300 YAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRSYR 379 (468)
T ss_dssp HHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSSCEEH
T ss_pred HHHHHHHHHHHHhcCcCCCCCcccccchhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEecCCcceec
Confidence 999999999998651 1 259999999999999 999998755 666542
Q ss_pred --CCCCCCC----CCCCcceeeCCCCC----CCcccCCCChhhHHHHHHHHHHHHHHHHhhcC
Q 013399 338 --PAAGYPS----ETRSLMPIRLPCSP----HEYCHSNITRSTFYKIRTEFLRGHNTTRDLMR 390 (444)
Q Consensus 338 --~~~~~~~----~~~~~m~IitP~~P----~~N~a~nVs~st~~~I~~Ef~rA~~il~~i~~ 390 (444)
..|.... ..++.|+|+||++| .+|+|++|+..+++.|++||++|+++|++...
T Consensus 380 ~~~~w~~~~n~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~~ 442 (468)
T 2b4v_A 380 SDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFLP 442 (468)
T ss_dssp HHHTCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred ccccccccccccCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2343210 11357999999999 99999999999999999999999999987543
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=5.6e-43 Score=357.41 Aligned_cols=274 Identities=16% Similarity=0.197 Sum_probs=218.0
Q ss_pred HHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCce
Q 013399 80 EERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDID 159 (444)
Q Consensus 80 ~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDID 159 (444)
-+.++|+++|.+ .+.||++|.+.|++++++|++++++-. ++++|++|||+.+|+++|+||||
T Consensus 5 ~~lt~EI~dFy~--~i~PT~eE~~~R~~vv~~l~~ii~~~~----------------p~~~v~~FGS~~tgl~lp~SDiD 66 (384)
T 3hj4_A 5 REFIRGMMAHYR--ASLPPPEHSVVIHELQKRVLDIGMLAV----------------NKAHVELFGSHVSGFCTPHSDAD 66 (384)
T ss_dssp HHHHHHHHHHHH--HHSCCTTHHHHHHHHHHHHHHHHHHHS----------------TTCEEEEESHHHHSCCCTTCCEE
T ss_pred hHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEEEEeeeccCCCCCCCCCee
Confidence 467899999998 688999999999999999999998521 57999999999999999999999
Q ss_pred EEeecCCccc-----ch--HHHHHH---HHHHHhcCCCcceeEEeccCceeEEEEEE--CCeeeccccccccccCCCccc
Q 013399 160 ALCLGPEFAT-----MA--EDFFVV---LHNMLKSRPEVSEIHCVKDAKVPLMRFKF--DGILIDLPYACLHVLSVPENV 227 (444)
Q Consensus 160 ~v~v~p~~~~-----~~--~~ff~~---l~~~L~~~~~v~~v~~I~~ArVPIIKf~~--~gI~vDLsf~~~~~~~~p~~~ 227 (444)
+++..+.... .+ ...... +.+.+.. .+++.+. |.+||||||||.. +|++|||+|++.
T Consensus 67 lvI~~~~~~~~~~~~~~~~~~~~lrll~L~k~~~~-~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn~--------- 135 (384)
T 3hj4_A 67 ISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASA-MGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGNI--------- 135 (384)
T ss_dssp EEEECTTCCGGGTTCHHHHHHHHHHHHHHHHHHHH-HTCEEEE-EECSSSCEEEEECTTTCCEEEEEECCH---------
T ss_pred EEEecCCCcccccccchhhHHHHHHHHHHHhhccc-CCeeEEe-ecCcccCEEEEEEcCCCeEEEEEeccc---------
Confidence 9998765321 01 011111 1222221 3566665 4599999999997 699999999963
Q ss_pred cCCCchhccccchhhhhhcchhhhHHHHHHHcCC-ccchhHHHHHHHHHHHHhccCCCcCcccchHHHHHHHHHHHHhCC
Q 013399 228 DVLNPFFLRDLDETSWKSLSGVRANKCILQLVPD-LEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHP 306 (444)
Q Consensus 228 ~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~-~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~alLva~~~Ql~P 306 (444)
+|++++++|..+... +++||+|+++||+|||+|||++++.|+||||+|++||++|||++|
T Consensus 136 -------------------~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~ 196 (384)
T 3hj4_A 136 -------------------GGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELG 196 (384)
T ss_dssp -------------------HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHT
T ss_pred -------------------chHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCC
Confidence 588999988888877 457999999999999999999999999999999999999999742
Q ss_pred ---C------------------------------------CCHHHH----HHHHHHhhccCCCCCce-eecCCCC-----
Q 013399 307 ---K------------------------------------GSLNTL----VANFFKTYAYWPWPTPV-MLQDPML----- 337 (444)
Q Consensus 307 ---~------------------------------------~sl~~L----L~~FF~~Ys~fdw~~pV-~l~~g~~----- 337 (444)
+ .|+|+| |.+||+||++|||.+.+ +|+.+..
T Consensus 197 vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~ 276 (384)
T 3hj4_A 197 LLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVY 276 (384)
T ss_dssp SSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHH
T ss_pred CCCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCccccccc
Confidence 2 138888 99999999999999764 4654321
Q ss_pred ----------------CCCC-------------------------CCCCCCCcceeeCCCCCCCcccCCCChhhHHHHHH
Q 013399 338 ----------------PAAG-------------------------YPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRT 376 (444)
Q Consensus 338 ----------------~~~~-------------------------~~~~~~~~m~IitP~~P~~N~a~nVs~st~~~I~~ 376 (444)
+.|. ..+..+.++.|+| +.-.+|+|+.|+.+....|+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 355 (384)
T 3hj4_A 277 ERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQ 355 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHH
T ss_pred chhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHH
Confidence 0110 1133468999999 999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcccccCcCC
Q 013399 377 EFLRGHNTTRDLMRPDFDWHFLFEPFP 403 (444)
Q Consensus 377 Ef~rA~~il~~i~~~~~~W~~L~~~~~ 403 (444)
||+||++++++- .++.+.+++|...+
T Consensus 356 ~~~~~~~~~~~~-~~~~~~~~~~~~~~ 381 (384)
T 3hj4_A 356 EFNRLREMLIDK-ESELKFDEVFRESD 381 (384)
T ss_dssp HHHHHHHHHTTT-GGGCCHHHHTCCCC
T ss_pred HHHHHHHHHhcc-cccccHHHHhhhcc
Confidence 999999999752 34567888876543
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=346.48 Aligned_cols=250 Identities=14% Similarity=0.203 Sum_probs=198.3
Q ss_pred HhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCceEE
Q 013399 82 RSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDAL 161 (444)
Q Consensus 82 ~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDID~v 161 (444)
.++++.++++ .+-||++|.+.|..++++|++++++. + ++++|++|||+.+|+++|+||||++
T Consensus 134 l~~EI~~f~~--~i~PT~eE~~~R~~vv~~le~ii~~~----------f------P~a~V~~FGS~~tGL~lp~SDIDlv 195 (464)
T 3pq1_A 134 IDDQLNTLLK--EFQLTEENTKLRYLTCSLIEDMAAAY----------F------PDCIVRPFGSSVNTFGKLGCDLDMF 195 (464)
T ss_dssp HHHHHHHHHH--HHBCCHHHHHHHHHHHHHHHHHHTTT----------S------TTCEEEEEGGGTSSCCBTTCCEEEE
T ss_pred HHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHH----------C------CCCEEEEeCCCccCCCCCCCCeEEE
Confidence 4578888887 57899999999999999999999851 1 5799999999999999999999999
Q ss_pred eecCCccc----------------------c--hHHHHHHHHHHHhcC-CCcceeEEeccCceeEEEEEEC--Ceeeccc
Q 013399 162 CLGPEFAT----------------------M--AEDFFVVLHNMLKSR-PEVSEIHCVKDAKVPLMRFKFD--GILIDLP 214 (444)
Q Consensus 162 ~v~p~~~~----------------------~--~~~ff~~l~~~L~~~-~~v~~v~~I~~ArVPIIKf~~~--gI~vDLs 214 (444)
+..+.... + ...++..+.+.|++. +++.+++.|.+||||||||++. |++|||+
T Consensus 196 l~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS 275 (464)
T 3pq1_A 196 LDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALT 275 (464)
T ss_dssp EECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEE
T ss_pred EecCCcccccccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEe
Confidence 86543110 0 023556677778764 6888999999999999999984 9999999
Q ss_pred cccccccCCCccccCCCchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcc-cchHH
Q 013399 215 YACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGF-LGGVH 293 (444)
Q Consensus 215 f~~~~~~~~p~~~~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~-Lgg~s 293 (444)
|++. +|++++.+|..+...++++|+|+++||+|||+|||++++.|+ ||||+
T Consensus 276 ~nn~----------------------------~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYs 327 (464)
T 3pq1_A 276 TNNR----------------------------IALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFS 327 (464)
T ss_dssp CSCT----------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHH
T ss_pred cCCC----------------------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHH
Confidence 9973 689999999999888999999999999999999999999997 99999
Q ss_pred HHHHHHHHHHhCC-----C------------------------------------CCHHHHHHHHHHhhccCCCCCceee
Q 013399 294 LAILVAHVCQNHP-----K------------------------------------GSLNTLVANFFKTYAYWPWPTPVML 332 (444)
Q Consensus 294 ~alLva~~~Ql~P-----~------------------------------------~sl~~LL~~FF~~Ys~fdw~~pV~l 332 (444)
|++||++|||++. + .++++||.+||+||++|||.+.++-
T Consensus 328 L~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIs 407 (464)
T 3pq1_A 328 LTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXX 407 (464)
T ss_dssp HHHHHHHHHHSCC-------CCSHHHHTTC---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCCC
T ss_pred HHHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCcccccc
Confidence 9999999999862 1 2679999999999999999876552
Q ss_pred cCCCCCCCCCCCCCCCcceeeCCCCCCCcccCCCChhhHHHHHHHHHHHHHHHHhhcC------CCCCcc--cccCcC
Q 013399 333 QDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMR------PDFDWH--FLFEPF 402 (444)
Q Consensus 333 ~~g~~~~~~~~~~~~~~m~IitP~~P~~N~a~nVs~st~~~I~~Ef~rA~~il~~i~~------~~~~W~--~L~~~~ 402 (444)
| ..|++.||+.+.+++++.|+++|..+|+.-.+ .+.+|. .|+.|.
T Consensus 408 -------------------I------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~~~~~~~~~~~~~wgl~~ll~~~ 460 (464)
T 3pq1_A 408 -------------------X------XXXXXXXVSQSQLQKFVDLARESAWILQQEDTDRPSISSNRPWGLVSLLLPS 460 (464)
T ss_dssp -------------------C------C-------CHHHHHHHHHHHHHHHHHHHCC-----------CCTTGGGCC--
T ss_pred -------------------c------ccccccccCHHHHHHHHHHHHHHHHHHhhccccCcCCCCCCCcchHHHhccC
Confidence 1 79999999999999999999999999984222 234676 455553
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.45 E-value=2.3e-12 Score=133.75 Aligned_cols=232 Identities=17% Similarity=0.193 Sum_probs=154.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCC-CCceEEee
Q 013399 85 SLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSE-SDIDALCL 163 (444)
Q Consensus 85 ~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~-SDID~v~v 163 (444)
-+.++++ .+-|+++|.++=+++.+.|...+++ . +.++...|||+-|.++++ ||||+.++
T Consensus 6 ~~~~~l~--~i~P~~~E~~~~~~~~~~I~~~L~~-~-----------------~~~v~~~GS~AkgT~Lrg~sDIDIfv~ 65 (437)
T 1r89_A 6 ILEKALE--LVIPDEEEVRKGREAEEELRRRLDE-L-----------------GVEYVFVGSYARNTWLKGSLEIDVFLL 65 (437)
T ss_dssp HHHHHHH--HHSCCHHHHHHHHHHHHHHHHHHHH-H-----------------TCCEEEEHHHHHTCCCTTCCEEEEEEE
T ss_pred HHHHHHH--hhCCCHHHHHHHHHHHHHHHHHHHh-C-----------------CCeEEEeccccCCCcCCCCCCceEEEE
Confidence 3456665 4779999999888888888888876 1 358999999999999997 99999999
Q ss_pred cCCcccchHHHHH----HHHHHHhcCCCcceeEEeccCceeEEEEEECCeeeccccccccccCCCccccCCCchhccccc
Q 013399 164 GPEFATMAEDFFV----VLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLD 239 (444)
Q Consensus 164 ~p~~~~~~~~ff~----~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~gI~vDLsf~~~~~~~~p~~~~~~~~~~L~~ld 239 (444)
.|.... ++++-. .+.+.+++ . .+..|.=|-+...++|+++|+.=| +++.+..-
T Consensus 66 f~~~~~-~e~l~~~~l~~~~e~l~~------~-~~~ya~hpyV~~~f~g~~vDVVP~----------y~v~~g~~----- 122 (437)
T 1r89_A 66 FPEEFS-KEELRERGLEIGKAVLDS------Y-EIRYAEHPYVHGVVKGVEVDVVPC----------YKLKEPKN----- 122 (437)
T ss_dssp ECTTSC-HHHHHHHHHHHHHHHSSS------E-EEEESSSEEEEEEETTEEEEEEEE----------ECCSSSSC-----
T ss_pred cCCCCC-HHHHHHHHHHHHHHHHHH------h-hhhccCCceEEEEecceEEEEEEE----------EEccCCcc-----
Confidence 887654 334322 22333332 1 255666788888889999999733 11111100
Q ss_pred hhhhhhcchhhhHHHHHHHcCC-ccchhHHHHHHHHHHHHhccCCC--cCcccchHHHHHHHHHHHHhCCCCCHHHHHHH
Q 013399 240 ETSWKSLSGVRANKCILQLVPD-LEKFQPVLRCIKLWAKRRGVYGN--LHGFLGGVHLAILVAHVCQNHPKGSLNTLVAN 316 (444)
Q Consensus 240 ~~s~~slnG~R~~~~I~~~vp~-~~~Fr~llr~IK~WAk~RgI~~~--~~G~Lgg~s~alLva~~~Ql~P~~sl~~LL~~ 316 (444)
+ ..++.-+..-.+++.. ...++..+|++|+|.|.-|+|++ +.++++||.+-||++++ .+-..+|..
T Consensus 123 ---~--~tavDrtp~H~~fv~~r~~~~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~~ 191 (437)
T 1r89_A 123 ---I--KSAVDRTPFHHKWLEGRIKGKENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVKN 191 (437)
T ss_dssp ---C--CSHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHHH
T ss_pred ---c--cccccCcHHHHHHHHhhhhhhhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHHH
Confidence 0 0121112222333332 22288999999999999999987 56889999999999994 243444443
Q ss_pred HHHhhccCCCCCceeecCCCCCCCCCCCCCCCcceeeCCCCCCCcccCCCChhhHHHHHHHHHHH
Q 013399 317 FFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRG 381 (444)
Q Consensus 317 FF~~Ys~fdw~~pV~l~~g~~~~~~~~~~~~~~m~IitP~~P~~N~a~nVs~st~~~I~~Ef~rA 381 (444)
+ + +|..++.|.-. . . ......++.|+||..|..|+|.++|..++..+..+-+..
T Consensus 192 ~----~--~w~~~~~Id~~-~--~--~~~~~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~ 245 (437)
T 1r89_A 192 A----R--RWTRRTVIDVA-K--G--EVRKGEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREF 245 (437)
T ss_dssp H----T--TCCTTEEEEGG-G--T--EEEECSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHH
T ss_pred H----H--HhCCCeEEecC-C--C--cccCCCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHH
Confidence 3 3 45556655221 1 1 010125788999999999999999998887777554444
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.18 E-value=1.3e-09 Score=110.04 Aligned_cols=285 Identities=12% Similarity=0.111 Sum_probs=147.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCC-CCceEEee
Q 013399 85 SLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSE-SDIDALCL 163 (444)
Q Consensus 85 ~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~-SDID~v~v 163 (444)
+|.+|+.+ .+-|++++.++=+++++.|...+++-. .........-.+++..|||+-|.++++ ||||++++
T Consensus 10 ~l~~fi~~-~l~p~~~~~~~i~~~~~~I~~~L~~~~--------~~~~~~~~~v~~v~~~GSyargT~lrg~sDiDlvV~ 80 (349)
T 1px5_A 10 DLDKFIED-HLLPNTXFRTQVKEAIDIVXRFLKERC--------FQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVF 80 (349)
T ss_dssp GHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHHHHT--------TCC---CCEEEEEEEEEEC--------CEEEEEEEE
T ss_pred HHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhhh--------cccccCCcceEEEEEecCcCCCcccCCCCceeEEEE
Confidence 57788854 578999998877788888888887521 110000001237889999999999996 99999999
Q ss_pred cCCcccc------hHHHHHHHHHHHhcC---CCcc-eeEEe-ccCcee-EEEEEE------CCeeeccccccccccCCCc
Q 013399 164 GPEFATM------AEDFFVVLHNMLKSR---PEVS-EIHCV-KDAKVP-LMRFKF------DGILIDLPYACLHVLSVPE 225 (444)
Q Consensus 164 ~p~~~~~------~~~ff~~l~~~L~~~---~~v~-~v~~I-~~ArVP-IIKf~~------~gI~vDLsf~~~~~~~~p~ 225 (444)
.+...+. ...+...+.+.|.+. ..+. ..... ..-+.| -+.|.+ .|++||+.-+--....+..
T Consensus 81 l~~~~~~~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~~~ 160 (349)
T 1px5_A 81 LTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTP 160 (349)
T ss_dssp EESCSCTTHHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSCCT
T ss_pred ECCCCchhhHHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhccccc
Confidence 8764321 123444444555431 1121 22211 111345 256655 4799998654211000000
Q ss_pred cccCCCchhcccc-chhhhhhcchhhh---HHHHHHHc-CCccchhHHHHHHHHHHHHhccCCCcCcccchHHHHHHHHH
Q 013399 226 NVDVLNPFFLRDL-DETSWKSLSGVRA---NKCILQLV-PDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAH 300 (444)
Q Consensus 226 ~~~~~~~~~L~~l-d~~s~~slnG~R~---~~~I~~~v-p~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~alLva~ 300 (444)
. ..-++....++ ....-..-.|... +..=.+.+ .....++.++|++|+|-++.+. ....+.++||.+-+|+++
T Consensus 161 ~-~~~~~~~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~lELL~~~ 238 (349)
T 1px5_A 161 G-YKPNPEIYVQLIKECKSRGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKK-THGNKLPPQYALELLTVY 238 (349)
T ss_dssp T-SCCCHHHHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHHHHHHHH
T ss_pred c-cCCChHHHHHHHhhccccccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHHHHhhh-cccCCCCChHHHHHHHHH
Confidence 0 00011111000 0000000001111 11111222 2346789999999999998864 223568999999999999
Q ss_pred HHHhCCC---CCHHHHHHHHHHhhccCCCCCceeecCCCCCCCCC--C----CC--CCCcceeeCCCCCCCcccCCCChh
Q 013399 301 VCQNHPK---GSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGY--P----SE--TRSLMPIRLPCSPHEYCHSNITRS 369 (444)
Q Consensus 301 ~~Ql~P~---~sl~~LL~~FF~~Ys~fdw~~pV~l~~g~~~~~~~--~----~~--~~~~m~IitP~~P~~N~a~nVs~s 369 (444)
.....+. .++.+-+..+|++-++|. ...|....-. .... . +. .+..--|+||+.|.+|+|.. +..
T Consensus 239 a~e~~~~~~~~~~~~~f~~vle~l~~~~-~~~i~w~~~y--~~~~~~~~~fl~~~l~~~~p~I~DP~dp~~NVa~~-~~~ 314 (349)
T 1px5_A 239 AWEQGSRKTDFSTAQGFQTVLELVLKHQ-KLCIFWEAYY--DFTNPVVGRCMLQQLKKPRPVILDPADPTGNVGGG-DTH 314 (349)
T ss_dssp HHHHHTCCSSCCHHHHHHHHHHHHHTGG-GCEECCCSSC--CSSSHHHHHHHHHHHTSSSCEEBCTTCTTCBTTCS-CHH
T ss_pred HHHhCCCccCCCHHHHHHHHHHHHHhCC-ccceeeeccc--cccchhHHhhhhhhhcCCCCeeeCCCCCCCcccCC-chh
Confidence 8876654 367788999999888753 1223321100 0000 0 00 01123599999999998887 777
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 013399 370 TFYKIRTEFLRGHNTTRD 387 (444)
Q Consensus 370 t~~~I~~Ef~rA~~il~~ 387 (444)
..+.+. ..|...|+.
T Consensus 315 ~~~~~~---~~A~~~l~~ 329 (349)
T 1px5_A 315 SWQRLA---QEARVWLGY 329 (349)
T ss_dssp HHHHHH---HHHHHHTTS
T ss_pred hHHHHH---HHHHHHHhc
Confidence 777766 334444443
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=98.21 E-value=0.00017 Score=72.80 Aligned_cols=265 Identities=15% Similarity=0.130 Sum_probs=164.8
Q ss_pred hHHHHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCC-
Q 013399 77 QMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSE- 155 (444)
Q Consensus 77 ~~d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~- 155 (444)
..|-..++.|++-=. .+.||++|..+=..++.+++.++...+ .+.|..+ ..-..|...|||.-|+++.+
T Consensus 22 ~~d~~~~~~llkr~~--~l~Ps~eEq~~v~~lv~kI~~~ld~li----v~pg~~e----~~L~~V~rVGs~aKgtll~G~ 91 (364)
T 4at7_A 22 PDETSFSEALLKRNQ--DLAPNSAEQASILSLVTKINNVIDNLI----VAPGTFE----VQIEEVRQVGSYKKGTMTTGH 91 (364)
T ss_dssp CCCHHHHHHHHHHHH--HHSCCHHHHHHHHHHHHHHHHHHHHHH----HCCTTCS----SCEEEEEEEHHHHHTCCCTTC
T ss_pred CChHHHHHHHHhcCC--ccCCCHHHHHHHHHHHHHHHHHHHhhh----cCCCccc----cccceeEEeccccCCceecCC
Confidence 347778888877555 588999999998888999888887643 2223221 12368999999999999997
Q ss_pred CCceEEeecCCcccch--HHHHHHHHHHHhcCCCcceeEE-eccCceeEEEEEECCeeeccccccccccCCCccccCCCc
Q 013399 156 SDIDALCLGPEFATMA--EDFFVVLHNMLKSRPEVSEIHC-VKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNP 232 (444)
Q Consensus 156 SDID~v~v~p~~~~~~--~~ff~~l~~~L~~~~~v~~v~~-I~~ArVPIIKf~~~gI~vDLsf~~~~~~~~p~~~~~~~~ 232 (444)
-|+|+++++..-.|.. +...+++.+.|+....-..+.. ...|.+=| +-....+.|=|... |+++--.|+
T Consensus 92 ~~~dlVvl~k~lPT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~I-~~~~~~v~i~It~t-------sp~lrk~dp 163 (364)
T 4at7_A 92 NVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEI-SSSDATVKILITTV-------PPNLRKLDP 163 (364)
T ss_dssp CEEEEEEEESSCCBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEEE-ECSSCEEEEEEEEC-------HHHHHTCCT
T ss_pred CceeEEEEecCCCCHHHHHHHHHHHHHHhhhhccccceeeccCcceEEE-ecCCCcEEEEEEeC-------ChhhccCCh
Confidence 7899999987766621 1233555666665321111111 11111111 00000111111111 112111222
Q ss_pred hhccccc-hhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHHHHHHHHHHhCC---CC
Q 013399 233 FFLRDLD-ETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHP---KG 308 (444)
Q Consensus 233 ~~L~~ld-~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~alLva~~~Ql~P---~~ 308 (444)
.. .+| ..+..+|-.+|-+....+...+ ...+.++|++|.-.++. ..++.|.+|.+-+|+.+..-.-| +.
T Consensus 164 ~~--~Ld~~~cl~aLaalRhAkWfq~na~~-s~v~~lIRIlkDlc~R~----~~w~pL~~waLELL~~~Ai~s~~~~~~l 236 (364)
T 4at7_A 164 EL--HLDIKVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRF----PGFEPLTPWILDLLGHYAVMNNPTRQPL 236 (364)
T ss_dssp TT--BCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHC----GGGTTCCHHHHHHHHHHHHHSSTTSSCC
T ss_pred hH--hcCHHHHHHHHHHhhhhHHHHhhccc-cccceeehhhHHHHHhc----CCcCCCCHHHHHHHHHHHHhcCCCCCCc
Confidence 21 122 3477788888999888776654 55778999999955544 23467999888888888777655 47
Q ss_pred CHHHHHHHHHHhhccCCCCCceeecCCCCCCCCCCCCCCCcceeeCCCCC-CCcccCCCChhhHHHHHHHHHHHHHHH
Q 013399 309 SLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSP-HEYCHSNITRSTFYKIRTEFLRGHNTT 385 (444)
Q Consensus 309 sl~~LL~~FF~~Ys~fdw~~pV~l~~g~~~~~~~~~~~~~~m~IitP~~P-~~N~a~nVs~st~~~I~~Ef~rA~~il 385 (444)
++++-+.++|+.-+. .+.+ +|++ -|.||+++ ..++....|...++.|..--+.+.+++
T Consensus 237 ~~~~afRRVLElLAs-----Gill-p~~~-------------Gi~DPCE~~~~~v~~~lt~qq~e~it~sAQ~~LRll 295 (364)
T 4at7_A 237 ALNVAYRRCLQILAA-----GLFL-PGSV-------------GITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRIL 295 (364)
T ss_dssp CHHHHHHHHHHHHHT-----TTTS-TTBC-------------CCBCTTSSSCCBGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-----Cccc-CCCC-------------CCcCCCCCCCcchhccCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999872 1222 1100 16688877 466667777777788887777777666
No 13
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=97.79 E-value=0.0033 Score=63.93 Aligned_cols=265 Identities=17% Similarity=0.174 Sum_probs=158.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhCCC-h------------------h---hhccCCeEEEEecccc
Q 013399 94 GLVPSTEEEDKRRNVIQKLKEIVL---AWVKRVAWQRRLP-K------------------E---QIAETHATILTYGSYG 148 (444)
Q Consensus 94 ~~~Ps~ee~~~R~~vl~~L~~iv~---~w~~~~~~~~~~~-~------------------~---~~~~~~~~l~~FGS~~ 148 (444)
.+||++||.+.=+.++..++..+| +|+.+-....+-. + . .....=.-|.-.|++.
T Consensus 22 ~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~la 101 (383)
T 4at7_B 22 SVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLVA 101 (383)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEeceec
Confidence 589999999999999999998887 5654321110000 0 0 0000123466699999
Q ss_pred cCCCCCC-CCceEEeecCCcccchHHHHHHHHH----HHhcCCC-ccee-EEeccCceeEEEEEECCeeecccccccccc
Q 013399 149 LGVHGSE-SDIDALCLGPEFATMAEDFFVVLHN----MLKSRPE-VSEI-HCVKDAKVPLMRFKFDGILIDLPYACLHVL 221 (444)
Q Consensus 149 lGv~~p~-SDID~v~v~p~~~~~~~~ff~~l~~----~L~~~~~-v~~v-~~I~~ArVPIIKf~~~gI~vDLsf~~~~~~ 221 (444)
-|+-+.| -+.|+|+++..-.| ..+.+.+.+ .|+.... -..+ ..+.+|.+=|-.-....+.|=|.+.+....
T Consensus 102 KGlLLkGd~~veLVvlck~kPT--~~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i~i~~~~~p~~~v~I~lTSp~~r 179 (383)
T 4at7_B 102 KGLLLKGDLDLELVLLCKEKPT--TALLDKVADNLAIQLTTVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVR 179 (383)
T ss_dssp HTCCCTTCCEEEEEEEESSCCB--HHHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEEEEECSSSSCCEEEEEEECHHHH
T ss_pred ccceECCCCceeEEEEeCCCCc--HHHHHHHHHHHHHHHhhccCCceEEeecCCcceEEEecCCCCCeEEEEEECCcccc
Confidence 9999975 89999999887776 345554444 4444221 1112 223344222210001124444444433100
Q ss_pred ----CC--CccccCCCchhccccc-hhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHH
Q 013399 222 ----SV--PENVDVLNPFFLRDLD-ETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHL 294 (444)
Q Consensus 222 ----~~--p~~~~~~~~~~L~~ld-~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~ 294 (444)
.. .++....|+.. .|| ..|+.+|-.+|-+..+.+..........++|++|.-.++.. .++-|.+|++
T Consensus 180 e~~~~~~~~~~~~~~dp~d--~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~----~~~pL~~waL 253 (383)
T 4at7_B 180 EEMEKVLAGETLSVNDPPD--VLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVP----TWGPLRGWPL 253 (383)
T ss_dssp HHHHHHHTTCCCCCCCCTT--BCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCG----GGGGGTTHHH
T ss_pred cchhhcccccccccCChhh--cCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcC----CcCCCcHhHH
Confidence 00 01111111110 122 34777888888877766555556667899999999555542 2357888999
Q ss_pred HHHHHHHHHhC-CCCCHHHHHHHHHHhhccCCCCCceeecCCCCCCCCCCCCCCCcceeeCCCC--CCCcccCCCChhhH
Q 013399 295 AILVAHVCQNH-PKGSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCS--PHEYCHSNITRSTF 371 (444)
Q Consensus 295 alLva~~~Ql~-P~~sl~~LL~~FF~~Ys~fdw~~pV~l~~g~~~~~~~~~~~~~~m~IitP~~--P~~N~a~nVs~st~ 371 (444)
-+|+.+..-.. .+.++++-+.++|+.-+..-.- ++ + --|.||++ |..|.+ ..+....
T Consensus 254 ELL~~~ai~s~~~~l~~~~afRRVLEllasG~lL------p~---------~----pgI~DPcEk~pt~~~~-~lt~qq~ 313 (383)
T 4at7_B 254 ELLCEKSIGTANRPMGAGEALRRVLECLASGIVM------PD---------G----SGIYDPCEKEATDAIG-HLDRQQR 313 (383)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTTTS------TT---------S----CCCBCTTCSSCCBTTT-TCCHHHH
T ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCccc------CC---------C----CCccCCCCCCCccccc-cCCHHHH
Confidence 89988877541 2378999999999998843211 11 1 12779998 766666 6777788
Q ss_pred HHHHHHHHHHHHHHH
Q 013399 372 YKIRTEFLRGHNTTR 386 (444)
Q Consensus 372 ~~I~~Ef~rA~~il~ 386 (444)
+.|..+-+.+.+++.
T Consensus 314 e~it~sAQ~~LR~~a 328 (383)
T 4at7_B 314 EDITQSAQHALRLAA 328 (383)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999988888877763
No 14
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.60 E-value=0.00024 Score=60.13 Aligned_cols=45 Identities=20% Similarity=0.125 Sum_probs=32.8
Q ss_pred CeEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhc
Q 013399 138 HATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKS 184 (444)
Q Consensus 138 ~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~ 184 (444)
..+++.|||++-|-+.++||||++++.+...+ ..+ +..+...|..
T Consensus 27 v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~-~~~-~~~l~~~l~~ 71 (114)
T 1no5_A 27 DYTVWAFGSRVKGKAKKYSDLDLAIISEEPLD-FLA-RDRLKEAFSE 71 (114)
T ss_dssp TSEEEEEGGGTTTCCCTTCCEEEEEECSSCCC-HHH-HHHHHHHHHH
T ss_pred CCEEEEEeccCCCCCCCCCCeEEEEEeCCCCC-HHH-HHHHHHHHHh
Confidence 35899999999999999999999998875433 122 2244555544
No 15
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=97.23 E-value=0.00048 Score=56.84 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCceEEeecCCc
Q 013399 107 NVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEF 167 (444)
Q Consensus 107 ~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~ 167 (444)
++++.+++.+....+ +.+ -..++.|||++.|-+.++||||++++.+..
T Consensus 7 ~~l~~l~~~i~~l~~----~~~---------v~~v~LFGS~arG~~~~~SDiDl~V~~~~~ 54 (98)
T 1wot_A 7 ETLRARREAVLSLCA----RHG---------AVRVRVFGSVARGEAREDSDLDLLVAFEEG 54 (98)
T ss_dssp HHHHHHHHHHHHHHH----HHT---------CSSCEECSHHHHTCCCTTCCCEEEECCCSS
T ss_pred HHHHHHHHHHHHHHH----HcC---------CcEEEEEccccCCCCCCCCCEEEEEEeCCC
Confidence 566666666654332 222 247999999999999999999999877643
No 16
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=97.15 E-value=0.00036 Score=59.20 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCceEEeecCCc
Q 013399 102 EDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEF 167 (444)
Q Consensus 102 ~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~ 167 (444)
...++++++.+++++....+ +++ .-..++.|||++-|-+.++||||++++....
T Consensus 9 ~~~~~~i~~~l~~~~~~l~~------~~~------~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 62 (111)
T 2rff_A 9 IESQIRMLKLAKEIVEEVAS------SFP------NLEEVYIFGSRARGDYLDTSDIDILFVFKGI 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HCT------TEEEEEEESHHHHSCCCTTCCEEEEEEESSC
T ss_pred ccCHHHHHHHHHHHHHHHHH------HcC------CccEEEEEeeeecCCCCCCCCEEEEEEecCC
Confidence 34567777777777765432 121 1258999999999999999999999987653
No 17
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=97.11 E-value=0.00035 Score=57.44 Aligned_cols=28 Identities=36% Similarity=0.319 Sum_probs=26.3
Q ss_pred eEEEEecccccCCCCCC-CCceEEeecCC
Q 013399 139 ATILTYGSYGLGVHGSE-SDIDALCLGPE 166 (444)
Q Consensus 139 ~~l~~FGS~~lGv~~p~-SDID~v~v~p~ 166 (444)
.+++.|||++-|-+.++ ||||++++.+.
T Consensus 18 ~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 18 AEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp CEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred cEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 69999999999999999 99999998865
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=95.62 E-value=0.014 Score=56.33 Aligned_cols=29 Identities=38% Similarity=0.329 Sum_probs=26.3
Q ss_pred eEEEEecccccCCCCCCCCceEEeecCCc
Q 013399 139 ATILTYGSYGLGVHGSESDIDALCLGPEF 167 (444)
Q Consensus 139 ~~l~~FGS~~lGv~~p~SDID~v~v~p~~ 167 (444)
.+|+.|||++-|-+.++||||++++....
T Consensus 41 ~~I~LFGS~ARG~~~~~SDIDilVv~~~~ 69 (272)
T 4ebj_A 41 VAILLKGSYARGDAATWSDIDFDVLVSTQ 69 (272)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred eEEEEEeceeCCCCCCCCceEEEEEecCC
Confidence 58999999999999999999999987653
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=95.12 E-value=0.023 Score=54.42 Aligned_cols=29 Identities=34% Similarity=0.534 Sum_probs=26.1
Q ss_pred eEEEEecccccCCCCCCCCceEEeecCCc
Q 013399 139 ATILTYGSYGLGVHGSESDIDALCLGPEF 167 (444)
Q Consensus 139 ~~l~~FGS~~lGv~~p~SDID~v~v~p~~ 167 (444)
..++.|||++-|-..++||||++++....
T Consensus 32 ~~~~lfGS~arg~~~~~SDiD~~v~~~~~ 60 (253)
T 1kny_A 32 KAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60 (253)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred eEEEEEccccCCCCCCCCCeeEEEEecCc
Confidence 58999999999999999999999987643
No 20
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=94.13 E-value=0.24 Score=49.57 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=76.8
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCcccc---hHHHHHHHHHHHhcCCCcceeEEeccCceeEE-EEEE------
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATM---AEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLM-RFKF------ 206 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~---~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPII-Kf~~------ 206 (444)
+..++..-|||+=|-.+ .+|||+++..|..... ...+...+.+.|.+.+.++++......+.-++ ++..
T Consensus 171 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k~~~v~~l~~~~~~~~ 249 (335)
T 2fmp_A 171 SEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE 249 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEEEEEECCCCCTTCCC
T ss_pred CCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCceEEEEEEeCCcccccC
Confidence 46899999999999877 5699999998843221 12567788889999888887666666654433 3322
Q ss_pred -CCeeeccccccccccCCCccccCCCchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCc
Q 013399 207 -DGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNL 285 (444)
Q Consensus 207 -~gI~vDLsf~~~~~~~~p~~~~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~ 285 (444)
.|+.|||-++... .+ .-.++-+-.+. .--|.++.||+++|+.=+.
T Consensus 250 ~~~~rVDl~~vp~~------~~------------------------~~aLl~fTGS~----~fnr~lR~~A~~kG~kl~e 295 (335)
T 2fmp_A 250 YPHRRIDIRLIPKD------QY------------------------YCGVLYFTGSD----IFNKNMRAHALEKGFTINE 295 (335)
T ss_dssp CCCEEEEEEECCGG------GH------------------------HHHHHHHHCCH----HHHHHHHHHHHHTTEEECS
T ss_pred CCceEEEEEEECHH------HH------------------------HHHHHHhhCCH----HHHHHHHHHHHHcCCcccc
Confidence 2789999887531 00 11122222222 2347789999999886666
Q ss_pred Ccc
Q 013399 286 HGF 288 (444)
Q Consensus 286 ~G~ 288 (444)
+|-
T Consensus 296 ~Gl 298 (335)
T 2fmp_A 296 YTI 298 (335)
T ss_dssp SCE
T ss_pred ccc
Confidence 664
No 21
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=92.76 E-value=0.28 Score=49.07 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=74.6
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEec-----cCce-eEEEEEE---C
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVK-----DAKV-PLMRFKF---D 207 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~-----~ArV-PIIKf~~---~ 207 (444)
+..++.+-|||+=|-.+ .+|||+++..|.... ...++..+.+.|.+.+.++++-... ..+. =|.++.. .
T Consensus 168 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~-~~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~k~~~v~~l~~~~~~ 245 (335)
T 2bcq_A 168 SGLLCVACGSYRRGKAT-CGDVDVLITHPDGRS-HRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRR 245 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTSST-TTTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTCC
T ss_pred CCcEEEEccccccCCCC-CCCeEEEEecCCchh-hhhHHHHHHHHHHhCCchHHHhhccccCCCCceEEEEEEccCCCCC
Confidence 46799999999999877 569999999876543 3467788888999888777643331 1232 1213321 5
Q ss_pred CeeeccccccccccCCCccccCCCchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCc
Q 013399 208 GILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHG 287 (444)
Q Consensus 208 gI~vDLsf~~~~~~~~p~~~~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G 287 (444)
|+.|||-++... .+ .-.++-+-.+. .--|.++.||+++|+.=+.+|
T Consensus 246 ~~rVDl~~vp~~------~~------------------------g~ALl~fTGS~----~fnr~lR~~A~~~G~kL~e~G 291 (335)
T 2bcq_A 246 HRRLDIIVVPYS------EF------------------------ACALLYFTGSA----HFNRSMRALAKTKGMSLSEHA 291 (335)
T ss_dssp CEEEEEEECCGG------GH------------------------HHHHHHHHCCH----HHHHHHHHHHHHTTCEECSSC
T ss_pred ceEEEEEEECHH------HH------------------------HHHHHHhhCCH----HHHHHHHHHHHHcCCCccccc
Confidence 789999877531 00 11122222222 244788999999988666666
Q ss_pred c
Q 013399 288 F 288 (444)
Q Consensus 288 ~ 288 (444)
-
T Consensus 292 l 292 (335)
T 2bcq_A 292 L 292 (335)
T ss_dssp E
T ss_pred c
Confidence 4
No 22
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=91.56 E-value=0.32 Score=47.71 Aligned_cols=103 Identities=20% Similarity=0.204 Sum_probs=55.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCCCCceEEeecCCcccchHH
Q 013399 94 GLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAED 173 (444)
Q Consensus 94 ~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ 173 (444)
|+.|.--.....++.++.|.+.+++- + .-..|..+||++.|-.-.-||||++++...... +.
T Consensus 13 ~~~~~~~~m~~~~e~l~~I~~~~~~d-----------~-----~i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~--~~ 74 (287)
T 3jz0_A 13 GLVPRGSHMLKQKELIANVKNLTESD-----------E-----RITACMMYGSFTKGEGDQYSDIEFYIFLKHSIT--SN 74 (287)
T ss_dssp ---------CHHHHHHHHHHHHHHHC-----------T-----TEEEEEECSGGGTTCCCTTCCEEEEEEECGGGT--TT
T ss_pred CcCCCCCCccCHHHHHHHHHHHHhcC-----------C-----CEEEEEEECCccCCCCCCccceeEEEEEcCcch--hh
Confidence 55666555666677777777777541 0 235789999999998888899999998654211 12
Q ss_pred HHHHHHHHHhcCCCcceeEEeccCceeEEEEEE-CCeeecccccccc
Q 013399 174 FFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKF-DGILIDLPYACLH 219 (444)
Q Consensus 174 ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~-~gI~vDLsf~~~~ 219 (444)
| .. ..-|.....+- + ......+ ..++.+ +|+.||+.|..+.
T Consensus 75 f-~~-~~Wl~~fG~~~-~-~f~~~~~-~~l~lF~Dg~riDl~l~~~~ 116 (287)
T 3jz0_A 75 F-DS-SNWLFDVAPYL-M-LYKNEYG-TEVVIFDNLIRGEFHFLSEK 116 (287)
T ss_dssp C-CH-HHHHHHHCCEE-E-EEECTTS-CEEEEETTSCEEEEEEEEGG
T ss_pred h-hh-HHHHHHhhhhh-e-Eeecccc-eEEEEecCCcEEEEEEeeHH
Confidence 2 11 12222211110 0 1112222 223444 7999999999764
No 23
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=90.60 E-value=0.43 Score=48.16 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=41.3
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVS 189 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~ 189 (444)
+..++..-|||+=|--+ .+|||+++..|.... ...++..+.+.|.+.+.++
T Consensus 175 ~~~~v~i~GSyRRgket-~gDvDilit~~~~~~-~~~ll~~v~~~L~~~~~i~ 225 (360)
T 2ihm_A 175 PGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQ-EVGLLPKVMSCLQSQGLVL 225 (360)
T ss_dssp TTCEEEECHHHHTTCSE-ESEEEEEEECSSTTT-TTTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCc-cCCeEEEEecCChhh-hhhHHHHHHHHHHhCCCee
Confidence 46899999999999877 569999999886543 2468888888898877765
No 24
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=89.70 E-value=0.31 Score=44.41 Aligned_cols=110 Identities=20% Similarity=0.195 Sum_probs=70.1
Q ss_pred ccCCeEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhc--CCCcc-eeEEeccCceeEEEEEE--CCe
Q 013399 135 AETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKS--RPEVS-EIHCVKDAKVPLMRFKF--DGI 209 (444)
Q Consensus 135 ~~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~--~~~v~-~v~~I~~ArVPIIKf~~--~gI 209 (444)
+.+++++.+-|||+=|-.+-+ |||+++..|.. ..+.+.|.+ .+.++ ++..-...+.-+ ++.. .|+
T Consensus 28 k~~g~~v~iaGS~RRgket~g-DiDiLit~~~~--------~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~~~~~ 97 (174)
T 1jaj_A 28 KILSKNIVAVGSLRREEKMLN-DVDLLIIVPEK--------KLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWEKKTY 97 (174)
T ss_dssp EECTTTEEEEEHHHHTCSEEC-CEEEEEEESSH--------HHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESSSCCE
T ss_pred cCCCcEEEEeccccCCCCCCC-CEEEEEecCCH--------HHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCCCCce
Confidence 346789999999999987765 99999988752 234556666 67776 654444444333 3433 689
Q ss_pred eeccccccccccCCCccccCCCchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcc
Q 013399 210 LIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGF 288 (444)
Q Consensus 210 ~vDLsf~~~~~~~~p~~~~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~ 288 (444)
.|||-++... .+ .-.++-+-.+. .-.+.++.||+++|..=+.+|-
T Consensus 98 rVDl~~vp~~------~f------------------------g~ALl~fTGSk----~hn~~lR~~A~~kG~~L~e~Gl 142 (174)
T 1jaj_A 98 QLDLFTALAE------EK------------------------PYAIFHFTGPV----SYLIRIRAALKKKNYKLNQYGL 142 (174)
T ss_dssp EEEEEEEETT------CH------------------------HHHHHHHHSCH----HHHHHHHHHHHHTTEEEETTEE
T ss_pred EEEEEEeCHH------HH------------------------HHHHHHhHCCH----HHHHHHHHHHHHcCCCcCcccc
Confidence 9999987531 10 11122222222 2347788999999986666664
No 25
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=88.89 E-value=1.9 Score=43.87 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=39.4
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCcccch-HHHHHHHHHHHhcCCCcc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATMA-EDFFVVLHNMLKSRPEVS 189 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~-~~ff~~l~~~L~~~~~v~ 189 (444)
+..++..-|||+=|--+- +|||+++..|...... ..++..+.+.|.+.+.++
T Consensus 195 ~~~~v~i~GSyRRgket~-gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~ 247 (381)
T 1jms_A 195 PDALVTMTGGFRRGKMTG-HDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLL 247 (381)
T ss_dssp TTCEEEECHHHHTTCSCB-SSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCCc-CCeEEEEeCCCccccchhhHHHHHHHHHHhCCCcc
Confidence 568999999999998774 5999999988654211 126777888888877663
No 26
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=88.64 E-value=2.6 Score=44.90 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=70.5
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEECCeeeccccc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYA 216 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~gI~vDLsf~ 216 (444)
...++..-|||+=|-.+- +|||+++..|.. + .+.+.|.+.+.+.++..-...+.-+ ++ ..|+.|||-++
T Consensus 179 ~~~~~~~~Gs~RRgke~~-gDiD~li~~~~~----~----~v~~~l~~~~~~~~~~~~g~~k~~~-~~-~~~~rvDl~~~ 247 (575)
T 3b0x_A 179 GVERAELCGSARRYKDTV-GDLDFLVASREG----E----RAVEGFVRLPQVKEVYAKGKERATV-FL-KNGLQVDLRVV 247 (575)
T ss_dssp TCCEEEECHHHHTTCSEE-SSEEEEEECSSH----H----HHHHHHHTSTTEEEEEEECSSEEEE-EE-TTSCEEEEEEE
T ss_pred CCcEEEEccccccCCCcc-CCeEEEEeCCCH----H----HHHHHHHhCcchhhHhhcCCCceEE-Ec-cCCcEEEEEEE
Confidence 457999999999988775 599999988753 1 3566777778887654444444333 11 26999999988
Q ss_pred cccccCCCccccCCCchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCccc
Q 013399 217 CLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFL 289 (444)
Q Consensus 217 ~~~~~~~p~~~~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~L 289 (444)
... .+ .-.++-+-.+. .--|.++.||++||+.=+.+|-.
T Consensus 248 ~~~------~~------------------------~~al~~~TGs~----~~n~~lR~~A~~~g~~l~~~gl~ 286 (575)
T 3b0x_A 248 PPE------SY------------------------GAGLQYLTGSA----AHSIRLRALAQEKGLKLSEYGVF 286 (575)
T ss_dssp CGG------GH------------------------HHHHHHHHCCH----HHHHHHHHHHHHTTCEEETTEEE
T ss_pred CHH------HH------------------------HHHHHHhhCCH----HHHHHHHHHHHHcCCCcchhhcc
Confidence 531 00 11122222222 24478899999999877777754
No 27
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=78.13 E-value=3.9 Score=42.16 Aligned_cols=48 Identities=31% Similarity=0.348 Sum_probs=36.5
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCc-cc-------chHHHHHHHHHHHhc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEF-AT-------MAEDFFVVLHNMLKS 184 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~-~~-------~~~~ff~~l~~~L~~ 184 (444)
.+.-|..+||++=|=-.++||||++++.+.. .+ ....||..+.+.+.+
T Consensus 153 ~~~aviamGk~Gr~EL~~~SDiDli~l~~~~~~~~~~~~~~~~~~~f~rla~~l~~ 208 (440)
T 1v4a_A 153 QPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIK 208 (440)
T ss_dssp CCCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccCcCCCCCcceEEEeCCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 4689999999999999999999999996633 11 134788887776554
No 28
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=69.63 E-value=11 Score=39.52 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=37.1
Q ss_pred CCeEEEEecccccCCCCCCCCceEEeecCCccc---------chHHHHHHHHHHHhc
Q 013399 137 THATILTYGSYGLGVHGSESDIDALCLGPEFAT---------MAEDFFVVLHNMLKS 184 (444)
Q Consensus 137 ~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~---------~~~~ff~~l~~~L~~ 184 (444)
.+.-|.-+|+++-+=-..+||||++++.+.... ....||..+.+.+.+
T Consensus 233 ~~~aviamGklGg~EL~~~SDiDlifv~~~~~~~~t~g~~~~~~~~~f~rlaq~li~ 289 (498)
T 3k7d_A 233 RGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMH 289 (498)
T ss_dssp CSEEEEEEHHHHTTCCCTTCCEEEEEEECCCTTCBBSSSSCCBHHHHHHHHHHHHHH
T ss_pred CCEEEEeeccccccccCcccccceeeeecCcccccccccccchHHHHHHHHHHHHHH
Confidence 578999999999999999999999998754210 125788877776554
No 29
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=62.95 E-value=19 Score=32.07 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=44.2
Q ss_pred CCeEEEEeccccc---CCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCce--eEEEEEECCeee
Q 013399 137 THATILTYGSYGL---GVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKV--PLMRFKFDGILI 211 (444)
Q Consensus 137 ~~~~l~~FGS~~l---Gv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArV--PIIKf~~~gI~v 211 (444)
.+..-...||+++ |+-.+.-|||+.+ .+ ++ ...+.+.|... +.+....-.+... -...+...|+.|
T Consensus 32 ~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i-~~------~d-a~~~~~~L~~~-g~~~~~~~~~~~~~~~f~~~~i~~v~V 102 (169)
T 2fcl_A 32 EXVNWVVTGSLSFALQGVPVEVHDIDIQT-DE------EG-AYEIERIFSEF-VSXXVRFSSTEXICSHFGELIIDGIXV 102 (169)
T ss_dssp SSCCEEEEHHHHHHHTTCCCCCCSEEEEE-CH------HH-HHHHHHHTGGG-EEEEEEEEECSSEEEEEEEEEETTEEE
T ss_pred cCCCEEEeHHHHHHHcCCCCCCCccEEEe-cc------cC-HHHHHHHHHHH-hhcccCCCccccccceeeEEeeCCEEE
Confidence 4678889999976 7777899999987 11 12 34567777763 2222222222221 134556689999
Q ss_pred ccccc
Q 013399 212 DLPYA 216 (444)
Q Consensus 212 DLsf~ 216 (444)
||.-.
T Consensus 103 Dlm~~ 107 (169)
T 2fcl_A 103 EIMGD 107 (169)
T ss_dssp EEEEE
T ss_pred Eeeec
Confidence 99853
No 30
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=47.99 E-value=21 Score=34.70 Aligned_cols=73 Identities=16% Similarity=0.083 Sum_probs=35.0
Q ss_pred eEEEEecccccCC--CCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEecc----------C-ceeEEEEE
Q 013399 139 ATILTYGSYGLGV--HGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKD----------A-KVPLMRFK 205 (444)
Q Consensus 139 ~~l~~FGS~~lGv--~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~----------A-rVPIIKf~ 205 (444)
--|..-||...+- .-.-||+|+++++... +.|... .+.|.+ +.++-.+.+ . .-|..-+.
T Consensus 24 ~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~----~~~~~~-~~wl~~---fg~~l~~~~~e~~~~~~~~~~~~~~~l~l 95 (294)
T 2pbe_A 24 RLVTLEGSRTNRNIPPDNFQDYDISYFVTDV----ESFKEN-DQWLEI---FGKRIMMQKPEDMELFPPELGNWFSYIIL 95 (294)
T ss_dssp EEEEEC------------CCCEEEEEEESCH----HHHHTC-SGGGGG---GCCEEEEECTTSCSSSCCCSTTCEEEEEE
T ss_pred EEEEEecCCCCCCCCCCCcccceEEEEEcCc----hHhhhh-HHHHHH---HhhHHhhccccccccCcccCCCceeEEEE
Confidence 4688899999865 6677999999998643 233221 112222 222222211 1 22333334
Q ss_pred E-CCeeecccccccc
Q 013399 206 F-DGILIDLPYACLH 219 (444)
Q Consensus 206 ~-~gI~vDLsf~~~~ 219 (444)
+ +|++||+.|.++.
T Consensus 96 f~dg~rIDl~~~~~~ 110 (294)
T 2pbe_A 96 FEDGNKLDLTLIPIR 110 (294)
T ss_dssp ETTSCEEEEEEEEGG
T ss_pred ecCCcEEEEEEecHH
Confidence 4 6999999999764
No 31
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=47.58 E-value=37 Score=27.82 Aligned_cols=57 Identities=23% Similarity=0.337 Sum_probs=42.3
Q ss_pred CCCCCCCCChHHHHHhHHHHHHHHhCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 013399 68 FPLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVI---QKLKEIVLAWVKRVA 124 (444)
Q Consensus 68 ~~l~~~~~~~~d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl---~~L~~iv~~w~~~~~ 124 (444)
+..+.+.|..+|+..-..+.++|++.|+..|+++...|-.-- ....+-+-.|.++++
T Consensus 23 M~tSas~P~sMdESTAKGifKyL~elGvPas~~dv~aRg~qegWn~gFT~k~~gWAek~e 82 (115)
T 2es9_A 23 MNTSASVPHSMDESTAKGILKYLHDLGVPVSPEVVVARGEQEGWNPEFTKKVAGWAEKVA 82 (115)
T ss_dssp SCTTCSSCCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCccchHHHHHHHHHHHHcCCCCCHHHHHHhcccccCChhHHHHHHHHHHHhc
Confidence 344556677899999999999999999999999999986532 123344556776654
No 32
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=35.52 E-value=42 Score=35.58 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=57.4
Q ss_pred EEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEECCeeeccccccccc
Q 013399 141 ILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHV 220 (444)
Q Consensus 141 l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~gI~vDLsf~~~~~ 220 (444)
+..-|||+=|-.+-+ |||+++.. .. +.. |.+.+.++ .-...+.-+ ++ .|+.|||-++...
T Consensus 182 ~~~~Gs~RR~~e~~g-DiD~li~~-~~----~~v-------l~~~~~v~---~~g~~k~~~-~~--~~~~vDl~~~~~~- 241 (578)
T 2w9m_A 182 PAPAGDVRRGLETVR-AAELTVTG-TP----DDV-------LARLPELT---VQGDGVLSG-DY--EGVPVEIACAPAE- 241 (578)
T ss_dssp CEECHHHHHTCSEES-SEEEEEES-CH----HHH-------HHHCTTCE---EC---CEEE-EE--TTEEEEEEEECTT-
T ss_pred CEEecccccCCCccC-CEEEEEec-Ch----HHH-------HhcCccce---ecCCceEEE-EE--CCEEEEEEEECHH-
Confidence 889999999987765 99998887 21 222 45556655 222233222 23 8999999988531
Q ss_pred cCCCccccCCCchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHH-HHHHHHHHHhccCCCcCccc
Q 013399 221 LSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVL-RCIKLWAKRRGVYGNLHGFL 289 (444)
Q Consensus 221 ~~~p~~~~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~ll-r~IK~WAk~RgI~~~~~G~L 289 (444)
.+ .-.++-+-. .-. +.++.||++||..=+.+|-.
T Consensus 242 -----~~------------------------~~al~~~TG------~~n~~~lr~~A~~~g~~l~~~gl~ 276 (578)
T 2w9m_A 242 -----AR------------------------GALDLLRSG------EHFAGQVQAAAQARGFTLTAGGLS 276 (578)
T ss_dssp -----TH------------------------HHHHHHTSC------HHHHHHHHHHHHTTTCEEETTEEE
T ss_pred -----HH------------------------HHHHHHHhh------hhHHHHHHHHHHHcCCCcChhhcc
Confidence 10 111222222 233 78899999999877777754
No 33
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase, translocation, single tranded RNA polymerase, RNA protein complex, processivity, heterodimer; HET: 3AT; 2.06A {Vaccinia virus WR} SCOP: e.69.1.1 PDB: 3er8_C* 3erc_C* 3owg_A 2ga9_D* 2gaf_D
Probab=23.18 E-value=67 Score=32.83 Aligned_cols=61 Identities=23% Similarity=0.471 Sum_probs=32.4
Q ss_pred HHHHhCCC-CCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccccCCCCCC---CCceE
Q 013399 88 QLMTNEGL-VPSTEEEDKRRNV---IQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSE---SDIDA 160 (444)
Q Consensus 88 ~~l~~~~~-~Ps~ee~~~R~~v---l~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~lGv~~p~---SDID~ 160 (444)
+.|+++++ .|++.+...|..| +..+++++.+.+++ + +-.-..||||.+-+--|+ .|||+
T Consensus 140 ~iL~synv~~~~~~~vmgRh~VSdLV~~V~klmeEyLrr----h----------Nk~CicYGSySlhlLNp~I~YgDIDi 205 (479)
T 3er9_B 140 DMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKLMEEYLRR----H----------NKSCICYGSYSLYLINPNIRYGDIDI 205 (479)
T ss_dssp HHHHHHCCCC-----------CCTTHHHHHHHHHHHHHH----C----------TTTEEEESHHHHHTTCTTCCCCSCEE
T ss_pred HHHHhcccccCCcccccccccccHHHHHHHHHHHHHHHh----c----------CCCeEEeeceeeeecCCCcccCCcce
Confidence 34444444 4555466777664 66667777666653 2 234578999988777664 99998
Q ss_pred Ee
Q 013399 161 LC 162 (444)
Q Consensus 161 v~ 162 (444)
+=
T Consensus 206 lq 207 (479)
T 3er9_B 206 LQ 207 (479)
T ss_dssp EE
T ss_pred ee
Confidence 63
Done!