BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013402
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 193/409 (47%), Gaps = 68/409 (16%)
Query: 38 KISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLY 97
++++ DFG GDG+T +++F+ AI + L + GG L VP GV+LTG +L S++ L+
Sbjct: 27 EVNLLDFGARGDGRTDCSESFKRAI---EELSKQGGGRLIVPEGVFLTGPIHLKSNIELH 83
Query: 98 LAKGAVIKATQDTWNW-PLIAPLPSYXXXXXXXXXXYMSFIHGDGLQDVVITGENGTIDG 156
+ IK D + P++ Y ++ ++V ITG +G +DG
Sbjct: 84 VK--GTIKFIPDPERYLPVV-----LTRFEGIELYNYSPLVYALDCENVAITG-SGVLDG 135
Query: 157 QG--AIWWNMWR-------------------------QRTLP----------FTRPNLIE 179
WW W+ +R P + RP+ ++
Sbjct: 136 SADNEHWWP-WKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQ 194
Query: 180 FMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIE 239
F R++++ V NSP W IHPV NV+IR + I + PN DGIDP+S + IE
Sbjct: 195 FYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEI--SSTGPNNDGIDPESCKYMLIE 252
Query: 240 DSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRR--VTGSSPFSGIAVGSETSGGVENV 297
TGDD V +KSG D G G PS I +R V + G+ +GSE SGGV NV
Sbjct: 253 KCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNV 312
Query: 298 LAEHINLYNVGVGIHVKTNIGRGGFIRNITVSD-----VYMENARKGIKIAGDVGDHPDD 352
+A + NV + +KTN RGG++ NI D V E R ++ + G++
Sbjct: 313 VARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEEGEY--- 369
Query: 353 KFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQG 401
LPVV + +K++ T + + I+GL+N I +S+ ++G
Sbjct: 370 ------LPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEG 412
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 138/305 (45%), Gaps = 38/305 (12%)
Query: 82 VYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYXXXXXXXXXXYMSFIHGDG 141
V+L+G +L S ++L + KG ++A N PS +FI
Sbjct: 51 VFLSGPLSLPSGVSLLIDKGVTLRAVN---NAKSFENAPSSCGVVDKNGKGCDAFITAVS 107
Query: 142 LQDVVITGENGTIDGQGAI--------WWNMW---RQRTLPFTRPNLIEFMNSRSIIISN 190
+ I G GTIDGQG + WW + + + L P LI+ S++ + N
Sbjct: 108 TTNSGIYGP-GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYN 166
Query: 191 VIFQNSPFWNIHPVYCSN--VVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 248
V NSP N H V+ TI P+ + NTDGIDP SS N+ I S I+TGDD
Sbjct: 167 VSLINSP--NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDD 224
Query: 249 LVAVKS---GWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLY 305
VA+K+ + I+ H G TG G+++GSET GV NV + + +
Sbjct: 225 NVAIKAYKGRAETRNISILHNDFG------TG----HGMSIGSETM-GVYNVTVDDLKMN 273
Query: 306 NVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGI 365
G+ +K++ G + + S+V M+N K I I D +K + +P + I
Sbjct: 274 GTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVI-----DTVYEKKEGSNVPDWSDI 328
Query: 366 TIKDV 370
T KDV
Sbjct: 329 TFKDV 333
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 144/350 (41%), Gaps = 56/350 (16%)
Query: 39 ISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYL 98
+++ DFG + DGKTLNTKA ++AI + G + +P G Y +G+ L S MTL L
Sbjct: 157 VNVRDFGAIDDGKTLNTKAIQQAIDSCKP-----GCRVEIPAGTYKSGALWLKSDMTLNL 211
Query: 99 AKGAVIKATQDTWNWPLIAPLPSYXXXXXXXXXXYMSFIHGDG-----LQDVVITGENGT 153
GA++ +++ ++P A Y ++ I + +++ ITG +G
Sbjct: 212 QAGAILLGSENPDDYP--AGYRLYPYSTIERPASLINAIDPNNSKPGTFRNIRITG-SGV 268
Query: 154 IDGQGAIWWNMWR-----QRTLPF------------------------------------ 172
IDG G + R+LP
Sbjct: 269 IDGNGWLRAKTAEITDELGRSLPQYVASKNSKVHEDGILAKNQVEKAVSDGMDLKNAYGQ 328
Query: 173 TRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDS 232
R +L+ ++ ++ +N F I + NVV + I D+ N DGI+ +
Sbjct: 329 RRSSLMTLRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGL-IHQTYDANNGDGIEFGN 387
Query: 233 SSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSG 292
S NV + +++ TGDD + +G E P G + I GS T
Sbjct: 388 SQNVMVFNNFFDTGDDCINFAAGTGEKA-QEQEPMKGAWLFNNYFRMGHGAIVTGSHTGA 446
Query: 293 GVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKI 342
+E++LAE+ +Y +G+ K+ GG RN+T + M + K + +
Sbjct: 447 WIEDILAENNVMYLTDIGLRAKSTSTIGGGARNVTFRNNAMRDLAKQVMV 496
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 19/213 (8%)
Query: 143 QDVVITGENG-TIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNI 201
D+ ITG +G +I+G G+ WW+ T+P + + +IS + NSP
Sbjct: 72 SDLTITGASGHSINGDGSRWWDG-EGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVF 130
Query: 202 HPVYCSNVVIRYVTIL-APADS---PNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWD 257
+ ++ +TI + D NTD D +S+ V I + + DD VAV SG +
Sbjct: 131 SVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSGEN 190
Query: 258 EY-GIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTN 316
Y Y G++I V G S + V+NV + N G+ +KTN
Sbjct: 191 IYFSGGYCSGGHGLSIGSVGGRSDNT-----------VKNVTFVDSTIINSDNGVRIKTN 239
Query: 317 IGRGGFIRNITVSDVYMEN-ARKGIKIAGDVGD 348
I G + ++T D+ + + A+ GI + + GD
Sbjct: 240 IDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGD 272
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 101/236 (42%), Gaps = 29/236 (12%)
Query: 143 QDVVITGENG-TIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNI 201
+ + +TG +G I+ GA WW+ + T +P S I+ + +N+P
Sbjct: 95 EHITVTGASGHLINCDGARWWD--GKGTSGKKKPKFFYAHGLDSSSITGLNIKNTPLMAF 152
Query: 202 HPVYCSNVVIRYVTIL-APADSP---NTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG-- 255
V +++ VTI A D+ NTD D +S V I ++ DD +AV SG
Sbjct: 153 -SVQANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSGEN 211
Query: 256 -WDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVK 314
W G G G++I +VG ++ V+NV EH + N + +K
Sbjct: 212 IWFTGGTCIG--GHGLSIG-----------SVGDRSNNVVKNVTIEHSTVSNSENAVRIK 258
Query: 315 TNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDV 370
T G G + IT S++ M GI G V + P P NG+TI+DV
Sbjct: 259 TISGATGSVSEITYSNIVM----SGISDYGVVIQQDYEDGKPTGKP-TNGVTIQDV 309
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 119/311 (38%), Gaps = 57/311 (18%)
Query: 141 GLQDVVITGENGT-IDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFW 199
G +D+ +T +G IDG G+ WW+ + T+P + + + +N+P
Sbjct: 66 GGKDLTVTMADGAVIDGDGSRWWDS-KGTNGGKTKPKFMYIHDVEDSTFKGINIKNTPVQ 124
Query: 200 NIHPVYCSNVVIRYVTIL-APADSP---NTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 255
I V +NV + TI + D NTDG D S+ V I + + DD +A+ SG
Sbjct: 125 AI-SVQATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSG 183
Query: 256 WDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKT 315
S T +G S +VG V+NV + N G+ +KT
Sbjct: 184 ----------ESISFTGGTCSGGHGLSIGSVGGRDDNTVKNVTISDSTVSNSANGVRIKT 233
Query: 316 NIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKV 375
G + IT S++ + +GIT +G +
Sbjct: 234 IYKETGDVSEITYSNIQL-----------------------------SGITD---YGIVI 261
Query: 376 QQSGLIQGLKNSPFTGICLSNINLQGVAG-----PTSPPLKCSDVSGSAYQVKPWPCSEL 430
+Q +P TGI ++++ + GV G T + C D S S + W +L
Sbjct: 262 EQDYENGSPTGTPSTGIPITDVTVDGVTGTLEDDATQVYILCGDGSCSDW---TWSGVDL 318
Query: 431 SSSQQTGACSN 441
S + + C N
Sbjct: 319 SGGKTSDKCEN 329
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 115/298 (38%), Gaps = 64/298 (21%)
Query: 144 DVVITGENG-TIDGQGAIWWNMWRQRTLPFTRPN--LIEFMNSRSIIISNVIFQNSPFWN 200
++ ITG +G IDG G +W+ + +P+ ++ + + I+N+ QN P
Sbjct: 70 NITITGASGHVIDGNGQAYWDGKGSNSNSNQKPDHFIVVQKTTGNSKITNLNIQNWPVHC 129
Query: 201 IHPVYCSNVVIRYVTILAPA-DSPN-----------TDGIDPDSSSNVCIEDSYISTGDD 248
S + I + + A D PN TDG D SS +V ++++++ DD
Sbjct: 130 FDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDD 189
Query: 249 LVAVKSGWD-EYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNV 307
VAV SG + Y G++I V G S GV+ + ++ +N N
Sbjct: 190 CVAVTSGTNIVVSNMYCSGGHGLSIGSVGGKS--------DNVVDGVQFLSSQVVNSQN- 240
Query: 308 GVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITI 367
G +K+N G G I N+T ++ + N
Sbjct: 241 --GCRIKSNSGATGTINNVTYQNIALTNIS------------------------------ 268
Query: 368 KDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLK-----CSDVSGSAY 420
+G VQQ L G P G+ +SNI V G + + C D S S +
Sbjct: 269 --TYGVDVQQDYLNGGPTGKPTNGVKISNIKFIKVTGTVASSAQDWFILCGDGSCSGF 324
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 19/242 (7%)
Query: 144 DVVITGENG-TIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIH 202
++ I G +G +ID QG+ WW+ + T+P + +S I + N+P
Sbjct: 69 NININGASGHSIDCQGSRWWDS-KGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFS 127
Query: 203 PVYCSNVVIRYVTILAPA-DSP---NTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDE 258
+ + + V I A DS NTD D SS+ V I + + DD +A+ SG +
Sbjct: 128 INSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTN- 186
Query: 259 YGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIG 318
I + T +G S +VG + V+ V + + N G+ +KT G
Sbjct: 187 --ITF-------TGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSG 237
Query: 319 RGGFIRNITVSDVYMEN-ARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQ 377
G + +T S + + N A+ GI I D + N +P+ G+T+ + G+ V
Sbjct: 238 ATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPIT-GLTLSKITGS-VAS 295
Query: 378 SG 379
SG
Sbjct: 296 SG 297
>pdb|2VBE|A Chain A, Tailspike Protein Of Bacteriophage Sf6
Length = 514
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 19/98 (19%)
Query: 32 MRYRNDK----ISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSG--------------- 72
+R ++DK ISI DFG + DG T N +A + AI + L G
Sbjct: 41 LRTQHDKNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYIV 100
Query: 73 GTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDT 110
G+ L +P GV + G + G+V++ + D+
Sbjct: 101 GSTLLIPGGVNIRGVGKASQLRAKSGLTGSVLRLSYDS 138
>pdb|2VBK|A Chain A, Native Tailspike Protein Of Bacteriophage Sf6
pdb|2VBM|A Chain A, Tailspike Protein Of Bacteriophage Sf6 Complexed With
Tetrasaccharide
Length = 514
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 19/98 (19%)
Query: 32 MRYRNDK----ISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSG--------------- 72
+R ++DK ISI DFG + DG T N +A + AI + L G
Sbjct: 41 LRTQHDKNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYIV 100
Query: 73 GTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDT 110
G+ L +P GV + G + G+V++ + D+
Sbjct: 101 GSTLLIPGGVNIRGVGKASQLRAKSGLTGSVLRLSYDS 138
>pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1H80|B Chain B, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1KTW|A Chain A, Iota-carrageenase Complexed To Iota-carrageenan Fragments
pdb|1KTW|B Chain B, Iota-carrageenase Complexed To Iota-carrageenan Fragments
Length = 464
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 41 ITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAK 100
+ DFG G+ + ++ A + AI I + +GGTLL +P G Y + S++ + +
Sbjct: 25 VDDFGANGNDTSDDSNALQRAINAISR-KPNGGTLL-IPNGTYHFLGIQMKSNVHIRVES 82
Query: 101 GAVIKATQDTWN 112
+IK TWN
Sbjct: 83 DVIIKP---TWN 91
>pdb|3LMW|A Chain A, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
pdb|3LMW|B Chain B, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
Length = 473
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 41 ITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAK 100
+ DFG G+ + ++ A + AI I + +GGTLL +P G Y + S++ + +
Sbjct: 26 VDDFGANGNDTSDDSNALQRAINAISR-KPNGGTLL-IPNGTYHFLGIQMKSNVHIRVES 83
Query: 101 GAVIKATQDTWN 112
+IK TWN
Sbjct: 84 DVIIKP---TWN 92
>pdb|3FFZ|A Chain A, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
pdb|3FFZ|B Chain B, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
Length = 1252
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 9 SILLSYFNCFSLASVVTCSGIVPMRYRNDK 38
IL+SYFN F + S ++ MRY+NDK
Sbjct: 834 KILISYFNKF--FKRIKSSSVLNMRYKNDK 861
>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To D-Xylose
pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To D-Glucose
pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To
6-Bromo-6-Deoxy-D-Glucose
Length = 491
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 50 GKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTG 86
G TL T+A +E + + H R++GG LL GV + G
Sbjct: 245 GNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIG 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,768,123
Number of Sequences: 62578
Number of extensions: 609279
Number of successful extensions: 1404
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1370
Number of HSP's gapped (non-prelim): 24
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)