Query 013402
Match_columns 443
No_of_seqs 257 out of 1733
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:29:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 1.2E-71 2.7E-76 557.5 48.0 364 33-430 47-425 (443)
2 PLN02155 polygalacturonase 100.0 1.8E-70 4E-75 540.6 45.0 360 33-429 22-393 (394)
3 PLN02188 polygalacturonase/gly 100.0 9.5E-71 2.1E-75 545.1 42.1 362 28-428 26-404 (404)
4 PLN02218 polygalacturonase ADP 100.0 1E-69 2.2E-74 541.2 45.6 354 34-428 63-431 (431)
5 PLN03003 Probable polygalactur 100.0 8.1E-69 1.7E-73 532.3 41.1 362 35-435 20-396 (456)
6 PLN03010 polygalacturonase 100.0 1.5E-67 3.3E-72 520.8 46.6 348 35-429 43-404 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 2.7E-54 5.9E-59 422.0 33.7 312 68-417 1-322 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 2.7E-47 5.9E-52 383.2 29.4 301 35-343 79-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 100.0 3.8E-27 8.3E-32 230.1 25.3 230 35-313 34-290 (455)
10 PLN03003 Probable polygalactur 99.9 8.5E-21 1.8E-25 189.5 29.3 198 176-404 105-334 (456)
11 PF12708 Pectate_lyase_3: Pect 99.9 2E-21 4.3E-26 180.8 21.4 211 38-311 1-224 (225)
12 PLN03010 polygalacturonase 99.9 2.7E-20 5.8E-25 184.8 29.6 207 176-414 131-360 (409)
13 PLN02218 polygalacturonase ADP 99.9 7.7E-21 1.7E-25 190.4 25.0 197 176-403 148-384 (431)
14 PLN02793 Probable polygalactur 99.9 8.8E-20 1.9E-24 183.6 31.0 197 176-403 135-370 (443)
15 PLN02155 polygalacturonase 99.9 1.6E-19 3.5E-24 178.9 30.9 197 177-403 108-339 (394)
16 PF00295 Glyco_hydro_28: Glyco 99.9 5.8E-20 1.3E-24 180.0 25.1 198 175-403 51-284 (326)
17 PLN02188 polygalacturonase/gly 99.9 3.6E-19 7.8E-24 177.2 26.7 198 177-403 115-350 (404)
18 PF03718 Glyco_hydro_49: Glyco 99.8 4.5E-18 9.8E-23 167.9 30.4 271 73-403 232-555 (582)
19 TIGR03805 beta_helix_1 paralle 99.7 3.4E-15 7.3E-20 145.2 26.3 188 58-306 1-202 (314)
20 COG5434 PGU1 Endopygalactoruna 99.5 2.3E-13 4.9E-18 138.3 16.1 152 197-376 237-399 (542)
21 TIGR03805 beta_helix_1 paralle 99.3 1.4E-10 3.1E-15 112.8 18.8 163 143-336 32-203 (314)
22 PF12541 DUF3737: Protein of u 98.8 3.5E-08 7.6E-13 90.2 11.0 125 180-340 94-229 (277)
23 TIGR03808 RR_plus_rpt_1 twin-a 98.8 1.5E-07 3.2E-12 93.3 15.6 142 177-342 108-290 (455)
24 PF13229 Beta_helix: Right han 98.8 5.4E-08 1.2E-12 84.7 11.3 141 177-343 2-145 (158)
25 PF07602 DUF1565: Protein of u 98.7 1E-06 2.2E-11 81.8 16.9 174 54-314 14-195 (246)
26 PRK10123 wcaM putative colanic 98.7 3.5E-06 7.6E-11 77.9 19.4 61 31-106 27-90 (464)
27 PF12541 DUF3737: Protein of u 98.5 7.2E-07 1.5E-11 81.8 11.1 101 178-313 131-231 (277)
28 PF03718 Glyco_hydro_49: Glyco 98.5 1.8E-06 3.8E-11 86.7 14.4 176 200-402 322-515 (582)
29 PF05048 NosD: Periplasmic cop 98.5 2.8E-06 6E-11 79.7 14.9 134 178-341 16-150 (236)
30 PF13229 Beta_helix: Right han 98.5 2.3E-06 5E-11 74.3 13.3 151 138-332 4-157 (158)
31 PLN02480 Probable pectinestera 98.5 3.8E-05 8.3E-10 75.0 22.2 42 53-99 58-105 (343)
32 COG3866 PelB Pectate lyase [Ca 98.4 1.2E-05 2.7E-10 75.0 15.8 119 178-307 95-229 (345)
33 COG3420 NosD Nitrous oxidase a 98.4 3.7E-05 7.9E-10 72.9 18.6 159 71-280 32-193 (408)
34 PF05048 NosD: Periplasmic cop 98.3 1.6E-05 3.5E-10 74.5 15.4 114 177-313 37-151 (236)
35 smart00656 Amb_all Amb_all dom 98.3 3.2E-05 6.9E-10 69.9 15.7 122 200-340 33-171 (190)
36 PF14592 Chondroitinas_B: Chon 98.3 0.00011 2.4E-09 73.0 19.6 26 54-84 3-28 (425)
37 smart00656 Amb_all Amb_all dom 98.1 0.00017 3.7E-09 65.1 16.8 142 177-335 33-188 (190)
38 PLN02497 probable pectinestera 98.1 0.00068 1.5E-08 65.9 20.8 46 53-99 42-89 (331)
39 PLN02176 putative pectinestera 98.1 0.0025 5.4E-08 62.3 24.2 44 54-99 50-96 (340)
40 COG3866 PelB Pectate lyase [Ca 98.0 0.00037 8E-09 65.4 17.1 169 137-340 95-280 (345)
41 PLN02773 pectinesterase 98.0 0.0024 5.3E-08 61.9 22.6 109 179-307 97-212 (317)
42 PF12708 Pectate_lyase_3: Pect 98.0 0.00048 1E-08 63.5 16.9 123 187-340 95-224 (225)
43 PLN02634 probable pectinestera 97.9 0.0032 7E-08 61.8 22.3 45 53-99 66-113 (359)
44 PLN02682 pectinesterase family 97.9 0.0058 1.2E-07 60.3 23.6 45 53-99 80-127 (369)
45 PF00544 Pec_lyase_C: Pectate 97.9 0.00011 2.5E-09 66.9 11.0 96 200-307 38-158 (200)
46 PLN02665 pectinesterase family 97.9 0.0057 1.2E-07 60.4 23.3 44 54-99 79-125 (366)
47 PRK10531 acyl-CoA thioesterase 97.8 0.0041 8.9E-08 62.2 20.7 51 47-99 87-140 (422)
48 PLN02432 putative pectinestera 97.7 0.014 3E-07 56.1 21.6 44 54-99 22-68 (293)
49 PF00544 Pec_lyase_C: Pectate 97.6 0.001 2.2E-08 60.7 12.7 127 178-314 39-188 (200)
50 PLN02304 probable pectinestera 97.6 0.021 4.5E-07 56.6 21.7 45 53-99 85-132 (379)
51 PLN02170 probable pectinestera 97.4 0.03 6.5E-07 57.9 21.1 46 53-99 235-283 (529)
52 PLN02708 Probable pectinestera 97.3 0.016 3.6E-07 60.6 18.3 46 53-99 251-299 (553)
53 PLN02671 pectinesterase 97.3 0.054 1.2E-06 53.4 20.8 45 53-99 69-116 (359)
54 PF01095 Pectinesterase: Pecti 97.3 0.0042 9.1E-08 60.1 12.9 45 53-99 10-57 (298)
55 COG3420 NosD Nitrous oxidase a 97.2 0.019 4.1E-07 54.9 15.7 122 137-287 123-245 (408)
56 PLN02916 pectinesterase family 97.1 0.077 1.7E-06 54.6 20.6 46 53-99 197-247 (502)
57 PLN02506 putative pectinestera 97.1 0.059 1.3E-06 56.2 20.0 32 54-86 243-274 (537)
58 PLN02201 probable pectinestera 97.1 0.099 2.1E-06 54.2 21.3 45 53-99 216-263 (520)
59 PLN02713 Probable pectinestera 97.1 0.061 1.3E-06 56.5 19.6 136 181-336 337-489 (566)
60 PLN02217 probable pectinestera 97.1 0.073 1.6E-06 56.7 20.2 136 181-336 334-486 (670)
61 PLN02995 Probable pectinestera 97.0 0.093 2E-06 54.8 20.5 136 181-336 309-461 (539)
62 PF01696 Adeno_E1B_55K: Adenov 97.0 0.054 1.2E-06 53.5 17.4 53 40-107 45-99 (386)
63 PLN03043 Probable pectinestera 97.0 0.063 1.4E-06 56.1 18.8 46 53-99 233-283 (538)
64 PLN02468 putative pectinestera 97.0 0.096 2.1E-06 55.1 20.0 134 182-335 343-489 (565)
65 PLN02745 Putative pectinestera 96.9 0.15 3.2E-06 53.9 21.1 135 181-335 369-520 (596)
66 PLN02416 probable pectinestera 96.9 0.093 2E-06 54.9 19.4 45 53-99 240-287 (541)
67 PLN02933 Probable pectinestera 96.9 0.16 3.4E-06 52.8 20.8 137 180-336 301-454 (530)
68 PLN02484 probable pectinestera 96.9 0.18 3.9E-06 53.3 21.4 136 181-336 357-509 (587)
69 PF12218 End_N_terminal: N ter 96.9 0.00075 1.6E-08 47.5 2.5 38 46-89 1-39 (67)
70 COG4677 PemB Pectin methyleste 96.8 0.31 6.8E-06 46.6 19.9 46 53-99 92-140 (405)
71 PLN02301 pectinesterase/pectin 96.8 0.13 2.7E-06 53.9 19.2 45 53-99 246-293 (548)
72 PLN02314 pectinesterase 96.8 0.18 3.9E-06 53.4 20.0 135 181-336 362-509 (586)
73 PLN02313 Pectinesterase/pectin 96.7 0.18 4E-06 53.3 19.5 32 53-85 285-316 (587)
74 PLN02197 pectinesterase 96.7 0.27 5.8E-06 51.9 20.3 45 53-99 285-332 (588)
75 PLN02990 Probable pectinestera 96.6 0.3 6.6E-06 51.4 20.5 45 53-99 269-316 (572)
76 PLN02488 probable pectinestera 96.6 0.26 5.6E-06 50.7 19.0 46 52-99 206-254 (509)
77 PF01696 Adeno_E1B_55K: Adenov 95.6 1.4 3E-05 43.8 18.0 55 185-245 122-177 (386)
78 PF07602 DUF1565: Protein of u 94.7 0.28 6.1E-06 45.9 10.0 73 268-344 122-196 (246)
79 PLN02773 pectinesterase 94.7 1.4 2.9E-05 43.0 15.0 140 202-374 97-239 (317)
80 PF03211 Pectate_lyase: Pectat 93.7 1.9 4.1E-05 39.4 12.8 128 208-369 62-194 (215)
81 TIGR03804 para_beta_helix para 93.3 0.13 2.7E-06 34.3 3.6 28 227-254 1-28 (44)
82 TIGR03804 para_beta_helix para 91.9 0.26 5.6E-06 32.8 3.6 41 200-245 1-41 (44)
83 PLN02480 Probable pectinestera 91.7 7.7 0.00017 38.3 15.1 19 233-251 164-182 (343)
84 PF03211 Pectate_lyase: Pectat 90.8 13 0.00028 34.1 15.6 129 183-330 60-194 (215)
85 PLN02665 pectinesterase family 90.6 7.2 0.00016 38.8 13.8 17 180-196 150-166 (366)
86 PLN02682 pectinesterase family 90.0 11 0.00024 37.5 14.4 54 233-306 195-248 (369)
87 PF08480 Disaggr_assoc: Disagg 89.4 8.5 0.00018 34.1 11.5 41 267-307 63-109 (198)
88 PF01095 Pectinesterase: Pecti 89.0 8.8 0.00019 37.2 12.8 54 233-306 114-167 (298)
89 PRK10123 wcaM putative colanic 88.2 2.8 6.1E-05 39.6 8.3 105 225-335 259-373 (464)
90 PLN02634 probable pectinestera 88.0 18 0.00039 35.9 14.3 20 233-252 181-200 (359)
91 PF14592 Chondroitinas_B: Chon 88.0 1.6 3.5E-05 43.9 7.2 75 268-343 245-329 (425)
92 PF09251 PhageP22-tail: Salmon 87.8 32 0.0007 34.5 17.2 71 267-343 263-353 (549)
93 PLN02176 putative pectinestera 87.0 29 0.00063 34.2 15.1 20 233-252 155-174 (340)
94 PLN02432 putative pectinestera 86.9 16 0.00035 35.2 13.1 54 233-306 120-173 (293)
95 PLN02671 pectinesterase 86.9 22 0.00047 35.4 14.2 54 233-306 185-238 (359)
96 PLN02916 pectinesterase family 86.7 28 0.0006 36.2 15.3 82 205-306 275-357 (502)
97 PLN02170 probable pectinestera 86.5 27 0.00058 36.6 15.1 21 233-253 340-360 (529)
98 PLN02497 probable pectinestera 85.5 25 0.00055 34.5 13.7 53 233-305 149-201 (331)
99 PF08480 Disaggr_assoc: Disagg 85.4 24 0.00052 31.4 12.0 69 184-252 2-83 (198)
100 PLN02933 Probable pectinestera 85.0 32 0.0007 36.1 15.0 113 203-336 301-420 (530)
101 PLN02708 Probable pectinestera 84.7 58 0.0013 34.5 17.8 21 233-253 357-377 (553)
102 PLN02304 probable pectinestera 84.7 44 0.00095 33.5 15.1 54 233-306 194-247 (379)
103 PLN02698 Probable pectinestera 84.0 26 0.00055 36.6 13.8 50 205-254 268-318 (497)
104 PLN02217 probable pectinestera 83.9 24 0.00052 38.1 13.7 112 204-336 334-452 (670)
105 PRK10531 acyl-CoA thioesterase 83.5 21 0.00047 36.1 12.5 125 204-336 203-336 (422)
106 PLN02201 probable pectinestera 83.2 28 0.0006 36.5 13.7 83 204-306 290-373 (520)
107 PLN02301 pectinesterase/pectin 83.0 19 0.00042 37.9 12.5 63 205-280 321-384 (548)
108 PLN02745 Putative pectinestera 82.1 25 0.00054 37.5 13.0 112 204-337 369-488 (596)
109 KOG1777 Putative Zn-finger pro 81.6 43 0.00093 33.8 13.4 30 72-101 47-76 (625)
110 PLN02698 Probable pectinestera 80.8 35 0.00075 35.6 13.4 138 180-337 266-420 (497)
111 PLN02484 probable pectinestera 79.9 26 0.00057 37.3 12.3 113 203-336 356-475 (587)
112 PLN02506 putative pectinestera 79.5 15 0.00032 38.7 10.2 22 233-254 346-367 (537)
113 PLN02713 Probable pectinestera 79.4 16 0.00035 38.7 10.5 111 204-336 337-455 (566)
114 PF08139 LPAM_1: Prokaryotic m 79.0 1.5 3.3E-05 25.3 1.6 18 1-18 7-24 (25)
115 PLN02314 pectinesterase 78.1 30 0.00065 36.9 12.1 113 203-337 361-481 (586)
116 PLN02416 probable pectinestera 76.3 18 0.00038 38.2 9.7 82 205-306 315-397 (541)
117 PLN02468 putative pectinestera 75.6 20 0.00044 38.0 10.0 113 204-337 342-461 (565)
118 PLN03043 Probable pectinestera 74.9 23 0.0005 37.3 10.2 15 182-196 311-325 (538)
119 PLN02197 pectinesterase 74.9 24 0.00052 37.6 10.3 81 205-305 362-443 (588)
120 PLN02995 Probable pectinestera 72.0 26 0.00057 36.9 9.7 112 204-336 309-427 (539)
121 PLN02313 Pectinesterase/pectin 70.1 31 0.00066 36.9 9.8 113 204-336 359-477 (587)
122 PLN02488 probable pectinestera 64.7 1.9E+02 0.004 30.3 13.9 20 233-252 311-330 (509)
123 PLN02990 Probable pectinestera 64.1 1.6E+02 0.0036 31.3 13.7 20 233-252 374-393 (572)
124 PF11106 YjbE: Exopolysacchari 57.3 9.2 0.0002 28.5 2.2 26 1-26 1-26 (80)
125 PRK11627 hypothetical protein; 55.3 15 0.00033 33.1 3.8 30 1-30 2-31 (192)
126 PF06291 Lambda_Bor: Bor prote 49.2 26 0.00056 27.8 3.7 23 1-23 1-23 (97)
127 PF07172 GRP: Glycine rich pro 48.8 12 0.00026 29.6 1.8 7 2-8 4-10 (95)
128 smart00710 PbH1 Parallel beta- 46.8 28 0.00062 18.9 2.8 11 235-245 3-13 (26)
129 TIGR03656 IsdC heme uptake pro 43.4 1.9E+02 0.0042 26.5 8.9 29 72-100 57-87 (217)
130 smart00722 CASH Domain present 41.9 1.7E+02 0.0036 24.0 8.1 12 184-195 45-56 (146)
131 PF05643 DUF799: Putative bact 40.6 47 0.001 30.4 4.5 17 1-17 1-17 (215)
132 COG3823 Glutamine cyclotransfe 39.9 94 0.002 28.5 6.2 69 1-88 1-70 (262)
133 COG4677 PemB Pectin methyleste 37.8 1.3E+02 0.0028 29.4 7.0 65 233-305 220-284 (405)
134 TIGR03525 GldK gliding motilit 36.0 59 0.0013 33.3 4.9 17 70-86 36-52 (449)
135 PRK09752 adhesin; Provisional 31.5 9E+02 0.02 28.3 17.3 13 390-402 347-359 (1250)
136 PRK13792 lysozyme inhibitor; P 30.7 51 0.0011 27.6 2.9 13 1-13 1-13 (127)
137 smart00722 CASH Domain present 30.2 1.4E+02 0.003 24.4 5.7 68 181-251 73-144 (146)
138 PRK09752 adhesin; Provisional 28.4 1E+03 0.022 27.9 15.6 65 207-280 96-165 (1250)
139 PF09677 TrbI_Ftype: Type-F co 27.9 56 0.0012 26.6 2.6 30 51-80 59-89 (111)
140 COG5294 Uncharacterized protei 25.0 52 0.0011 26.6 1.9 17 1-17 1-17 (113)
141 cd07986 LPLAT_ACT14924-like Ly 24.8 87 0.0019 28.4 3.7 27 53-83 83-109 (210)
142 PF05968 Bacillus_PapR: Bacill 24.4 62 0.0013 21.5 1.8 18 1-18 1-18 (48)
143 PF02373 JmjC: JmjC domain, hy 24.1 48 0.001 26.4 1.6 16 70-85 85-100 (114)
144 PRK09810 entericidin A; Provis 24.0 69 0.0015 21.0 2.0 9 1-9 2-10 (41)
145 PRK02515 psbU photosystem II c 23.2 70 0.0015 26.8 2.4 20 1-20 1-20 (132)
146 PF05984 Cytomega_UL20A: Cytom 23.0 81 0.0017 24.0 2.4 10 1-10 1-10 (100)
147 PRK10081 entericidin B membran 22.3 63 0.0014 22.0 1.6 13 1-13 2-14 (48)
148 PF11429 Colicin_D: Colicin D; 22.0 2E+02 0.0043 22.6 4.5 37 42-84 10-47 (92)
149 PRK11143 glpQ glycerophosphodi 21.7 2.5E+02 0.0054 28.0 6.4 31 34-64 23-53 (355)
150 PRK10449 heat-inducible protei 20.7 74 0.0016 27.0 2.2 18 1-18 1-18 (140)
151 PHA00672 hypothetical protein 20.0 1.5E+02 0.0033 24.6 3.6 21 74-94 50-70 (152)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.2e-71 Score=557.53 Aligned_cols=364 Identities=28% Similarity=0.428 Sum_probs=318.7
Q ss_pred CCCCceEEEeeccccCCCcchhHHHHHHHHH-HhhhhccCCCeEEEECCC-ceEEEEeEe----ccccEEEEccCcEEEe
Q 013402 33 RYRNDKISITDFGGVGDGKTLNTKAFREAIY-RIQHLRRSGGTLLYVPPG-VYLTGSFNL----TSHMTLYLAKGAVIKA 106 (443)
Q Consensus 33 ~~~~~~~nV~dyGa~gDg~tddt~aiq~Ai~-~~~~~~~~gg~~V~ip~G-~Y~~~~l~l----~s~~tl~~~~ga~l~~ 106 (443)
+..++++||+||||+|||.+|||+|||+||+ +|+ +.+|++|+||+| +|++++|.| ||+++|+++ ++|++
T Consensus 47 ~~~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~---~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~ 121 (443)
T PLN02793 47 PRSERVLHVGDFGAKGDGVTDDTQAFKEAWKMACS---SKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIA 121 (443)
T ss_pred CCCceEEEhhhcccCCCCCCccHHHHHHHHHHHhc---cCCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEc
Confidence 3355899999999999999999999999999 565 678899999999 599999999 899999997 89999
Q ss_pred cCCCCCCCCcCCCCCCCcccccCCCcceeeEEecCeeeeEEeccCcEEeCCCchhhhhhcc---CCCCCCCCeeEEEEee
Q 013402 107 TQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQ---RTLPFTRPNLIEFMNS 183 (443)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~~G~idG~G~~~~~~~~~---~~~~~~~~~~i~~~~~ 183 (443)
+.++++|+.. ..+.++++.+++|++|+|. |+|||+|+.||+.... ......||++|+|.+|
T Consensus 122 ~~d~~~w~~~---------------~~~~~i~~~~~~ni~ItG~-G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~ 185 (443)
T PLN02793 122 PKDPDVWKGL---------------NPRKWLYFHGVNHLTVEGG-GTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKC 185 (443)
T ss_pred cCChHHccCC---------------CCceEEEEecCceEEEEec-eEEECCCcccccccccccCCCCccCCceEEEEEee
Confidence 9998888642 1236788999999999998 9999999999975321 1123458999999999
Q ss_pred cceEEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCcccccccc
Q 013402 184 RSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAY 263 (443)
Q Consensus 184 ~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~ 263 (443)
+|++|++++++|+|.|++++..|++|+|++++|.++..++|+||||+.+|+||+|+||+|.++||||++|++
T Consensus 186 ~nv~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~-------- 257 (443)
T PLN02793 186 KDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGN-------- 257 (443)
T ss_pred ccEEEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCC--------
Confidence 999999999999999999999999999999999998889999999999999999999999999999999986
Q ss_pred CCCcccEEEEEEEEeCCCceEEEccc----cCCcEEEEEEEeeEEeCCceeEEEEeecCCCceEEEEEEEeEEEcccCee
Q 013402 264 GHPSSGITIRRVTGSSPFSGIAVGSE----TSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKG 339 (443)
Q Consensus 264 ~~~~~ni~i~n~~~~~~~~gi~igs~----~~~~v~nI~i~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~ 339 (443)
++||+|+||+|.. ++||+|||+ +.+.|+||+|+||+|.++.+|++||+|.+++|.|+||+|+|++|+++.+|
T Consensus 258 ---s~nI~I~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~p 333 (443)
T PLN02793 258 ---SSRIKIRNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNP 333 (443)
T ss_pred ---cCCEEEEEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCce
Confidence 8999999999965 789999997 34679999999999999999999999998889999999999999999999
Q ss_pred EEEEcccCCCCCCCCCCCCCCeEEeEEEEeEEEecc-CeeEEEEecCCCCeeeEEEEeEEEEeeCCCCCCCeeeeecccC
Q 013402 340 IKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKV-QQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGS 418 (443)
Q Consensus 340 i~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~-~~~~~i~g~~~~~i~ni~~~nv~~~~~~~~~~~~~~c~~v~~~ 418 (443)
|.|++.|.........+...+.|+||+|+||+++.. ..++.|.|.++.||+||+|+||+++...+. ...+.|.|+++.
T Consensus 334 I~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~ 412 (443)
T PLN02793 334 IIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGS 412 (443)
T ss_pred EEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEe
Confidence 999998865222211222235899999999999875 357889999999999999999999987655 346889999998
Q ss_pred cC-cccCCCCCCC
Q 013402 419 AY-QVKPWPCSEL 430 (443)
Q Consensus 419 ~~-~~~p~~~~~~ 430 (443)
.. .+.|+||++.
T Consensus 413 ~~~~~~p~~C~~~ 425 (443)
T PLN02793 413 SSGQVYPPPCFSD 425 (443)
T ss_pred ECCeEcCCccccC
Confidence 75 4778899864
No 2
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.8e-70 Score=540.63 Aligned_cols=360 Identities=27% Similarity=0.389 Sum_probs=311.4
Q ss_pred CCCCceEEEeeccccCCCcchhHHHHHHHHH-HhhhhccCCCeEEEECCCceEEEEeEe----ccccEEEEccCcEEEec
Q 013402 33 RYRNDKISITDFGGVGDGKTLNTKAFREAIY-RIQHLRRSGGTLLYVPPGVYLTGSFNL----TSHMTLYLAKGAVIKAT 107 (443)
Q Consensus 33 ~~~~~~~nV~dyGa~gDg~tddt~aiq~Ai~-~~~~~~~~gg~~V~ip~G~Y~~~~l~l----~s~~tl~~~~ga~l~~~ 107 (443)
...++++||++|||+|||.+|||+|||+||+ +|+ ++||++|+||+|+|++++|.| ||+++|+++ ++|+++
T Consensus 22 ~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~---~~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l~--G~l~~~ 96 (394)
T PLN02155 22 SSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACG---SASSATVVVPTGTFLLKVITFGGPCKSKITFQVA--GTVVAP 96 (394)
T ss_pred ccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcc---cCCCeEEEECCCcEEEEEEEEcccCCCCceEEEe--eEEECc
Confidence 3456799999999999999999999999995 775 678999999999999999998 999999998 477776
Q ss_pred CCCCCCCCcCCCCCCCcccccCCCcceeeEEecCeeeeEEeccCcEEeCCCchhhhhhccCCCCCCCCeeEEEEeecceE
Q 013402 108 QDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSII 187 (443)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~~G~idG~G~~~~~~~~~~~~~~~~~~~i~~~~~~nv~ 187 (443)
.+...|.. . ..++.+.+++++.|+| |+|||+|+.||...........+|++++|.+|+|++
T Consensus 97 ~d~~~~~~---------------~--~~wi~~~~~~~i~i~G--G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~ 157 (394)
T PLN02155 97 EDYRTFGN---------------S--GYWILFNKVNRFSLVG--GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVI 157 (394)
T ss_pred cccccccc---------------c--ceeEEEECcCCCEEEc--cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEE
Confidence 55543321 0 1367889999999999 999999999997644333334578899999999999
Q ss_pred EEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccccccCCCc
Q 013402 188 ISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPS 267 (443)
Q Consensus 188 I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~ 267 (443)
|++++++|+|.|++++..|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++ +
T Consensus 158 i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~g-----------s 226 (394)
T PLN02155 158 ISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPG-----------T 226 (394)
T ss_pred EECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCC-----------C
Confidence 99999999999999999999999999999998889999999999999999999999999999999997 8
Q ss_pred ccEEEEEEEEeCCCceEEEccc----cCCcEEEEEEEeeEEeCCceeEEEEeecC-CCceEEEEEEEeEEEcccCeeEEE
Q 013402 268 SGITIRRVTGSSPFSGIAVGSE----TSGGVENVLAEHINLYNVGVGIHVKTNIG-RGGFIRNITVSDVYMENARKGIKI 342 (443)
Q Consensus 268 ~ni~i~n~~~~~~~~gi~igs~----~~~~v~nI~i~n~~~~~~~~gi~i~s~~~-~~g~v~nI~~~ni~~~~~~~~i~i 342 (443)
+||+|+||+|.. ++||+|||+ +.++|+||+|+||+|.++.+|++||+|.+ ++|.|+||+|+|++|+++++||.|
T Consensus 227 ~nI~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i 305 (394)
T PLN02155 227 RNFLITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIII 305 (394)
T ss_pred ceEEEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEE
Confidence 999999999976 799999997 46789999999999999999999999864 679999999999999999999999
Q ss_pred EcccCCCCCCCCCCCCCCeEEeEEEEeEEEecc-CeeEEEEecCCCCeeeEEEEeEEEEeeCCCCCCCeeeeecccCcCc
Q 013402 343 AGDVGDHPDDKFNPNALPVVNGITIKDVWGTKV-QQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQ 421 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~-~~~~~i~g~~~~~i~ni~~~nv~~~~~~~~~~~~~~c~~v~~~~~~ 421 (443)
++.|.........+...+.|+||+|+||+++.+ ..++.|.|.++.||+||+|+||+++...+. +..+.|.||.+....
T Consensus 306 ~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~-~~~~~C~n~~G~~~~ 384 (394)
T PLN02155 306 DQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGT-PATSFCFNAVGKSLG 384 (394)
T ss_pred EecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCC-ccCcEEeccEeEEcc
Confidence 999864322111112224899999999999877 457889999999999999999999998544 457999999998755
Q ss_pred c-cCCCCCC
Q 013402 422 V-KPWPCSE 429 (443)
Q Consensus 422 ~-~p~~~~~ 429 (443)
+ .|.+|.+
T Consensus 385 ~~~p~~c~~ 393 (394)
T PLN02155 385 VIQPTSCLN 393 (394)
T ss_pred cCCcccccC
Confidence 4 7778975
No 3
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=9.5e-71 Score=545.08 Aligned_cols=362 Identities=29% Similarity=0.418 Sum_probs=311.4
Q ss_pred ccccCCCCCceEEEeeccccCCCcchhHHHHHHHHH-HhhhhccCCCeEEEECCCceEEEEeEec------cccEEEEcc
Q 013402 28 GIVPMRYRNDKISITDFGGVGDGKTLNTKAFREAIY-RIQHLRRSGGTLLYVPPGVYLTGSFNLT------SHMTLYLAK 100 (443)
Q Consensus 28 ~~~~~~~~~~~~nV~dyGa~gDg~tddt~aiq~Ai~-~~~~~~~~gg~~V~ip~G~Y~~~~l~l~------s~~tl~~~~ 100 (443)
..+.-+.+++++||+||||+|||.+|||+|||+||+ +|+ +.||++|+||||+|++++|.|+ |+++|
T Consensus 26 ~~~~~~~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~---~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l---- 98 (404)
T PLN02188 26 GSVVKGSSTFLFDVRSFGARANGHTDDSKAFMAAWKAACA---STGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF---- 98 (404)
T ss_pred CcccccCCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhc---cCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE----
Confidence 334556677899999999999999999999999997 564 6788899999999999999997 44554
Q ss_pred CcEEEecCCCCCCCCcCCCCCCCcccccCCCcceeeEEecCeeeeEEeccCcEEeCCCchhhhhhcc--CCCCCCCCeeE
Q 013402 101 GAVIKATQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQ--RTLPFTRPNLI 178 (443)
Q Consensus 101 ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~~G~idG~G~~~~~~~~~--~~~~~~~~~~i 178 (443)
+|+++.+.++|+.. ..++.+..++|++|+|. |+|||+|+.||+.... ......||++|
T Consensus 99 --~L~~s~d~~~y~~~-----------------~~~i~~~~~~ni~I~G~-G~IDG~G~~ww~~~~~~~~~~~~~rP~~i 158 (404)
T PLN02188 99 --TLKAATDLSRYGSG-----------------NDWIEFGWVNGLTLTGG-GTFDGQGAAAWPFNKCPIRKDCKLLPTSV 158 (404)
T ss_pred --EEEcCCCHHHCCCc-----------------cceEEEeceeeEEEEee-EEEeCCCcccccccccccCCCCCcCceEE
Confidence 88899998887531 12455567899999998 9999999999974321 12345689999
Q ss_pred EEEeecceEEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccc
Q 013402 179 EFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDE 258 (443)
Q Consensus 179 ~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~~~ 258 (443)
.|.+|+|++|++++++|+|+|++++..|++|+|++++|.++.+++|+||||+.+|++|+|+||+|.++||||++|++
T Consensus 159 ~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg--- 235 (404)
T PLN02188 159 KFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQG--- 235 (404)
T ss_pred EEEeeeeEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccC---
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999997
Q ss_pred cccccCCCcccEEEEEEEEeCCCceEEEcc----ccCCcEEEEEEEeeEEeCCceeEEEEeecC--CCceEEEEEEEeEE
Q 013402 259 YGIAYGHPSSGITIRRVTGSSPFSGIAVGS----ETSGGVENVLAEHINLYNVGVGIHVKTNIG--RGGFIRNITVSDVY 332 (443)
Q Consensus 259 ~g~~~~~~~~ni~i~n~~~~~~~~gi~igs----~~~~~v~nI~i~n~~~~~~~~gi~i~s~~~--~~g~v~nI~~~ni~ 332 (443)
++||+|+||.|.. ++||+||| ++.++++||+|+||+|.++.+|++||+|.+ ++|.|+||+|+|++
T Consensus 236 --------~~nI~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~ 306 (404)
T PLN02188 236 --------NSQVTITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIV 306 (404)
T ss_pred --------CccEEEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEE
Confidence 7899999999965 79999999 667889999999999999999999999975 35899999999999
Q ss_pred EcccCeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEeEEEecc-CeeEEEEecCCCCeeeEEEEeEEEEeeCCCCCCCee
Q 013402 333 MENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKV-QQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLK 411 (443)
Q Consensus 333 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~-~~~~~i~g~~~~~i~ni~~~nv~~~~~~~~~~~~~~ 411 (443)
|+++.+||.|++.|.........+...+.|+||+|+||+++.. ..++.+.|.++.||+||+|+||+++...+.....+.
T Consensus 307 m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~ 386 (404)
T PLN02188 307 MNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSS 386 (404)
T ss_pred ecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCce
Confidence 9999999999998865332211112235899999999999876 457889999999999999999999987554445699
Q ss_pred eeecccCcC-cccCCCCC
Q 013402 412 CSDVSGSAY-QVKPWPCS 428 (443)
Q Consensus 412 c~~v~~~~~-~~~p~~~~ 428 (443)
|.||++... .+.|++|+
T Consensus 387 C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 387 CENVRAKYIGTQIPPPCP 404 (404)
T ss_pred eEcceeEEcccCcCCCCC
Confidence 999999875 77888885
No 4
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1e-69 Score=541.16 Aligned_cols=354 Identities=31% Similarity=0.479 Sum_probs=311.4
Q ss_pred CCCceEEEeeccccCCCcchhHHHHHHHHH-HhhhhccCCCeEEEECCC-ceEEEEeEec----cccEEEEccCcEEEec
Q 013402 34 YRNDKISITDFGGVGDGKTLNTKAFREAIY-RIQHLRRSGGTLLYVPPG-VYLTGSFNLT----SHMTLYLAKGAVIKAT 107 (443)
Q Consensus 34 ~~~~~~nV~dyGa~gDg~tddt~aiq~Ai~-~~~~~~~~gg~~V~ip~G-~Y~~~~l~l~----s~~tl~~~~ga~l~~~ 107 (443)
.+++++||+||||+|||.+|||+|||+||+ +|+ +.|+++|+||+| +|+++++.|+ ++++|++ +|+|+++
T Consensus 63 ~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs---~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l--~g~L~~s 137 (431)
T PLN02218 63 RTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACS---SNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQI--FGTLSAS 137 (431)
T ss_pred CCCcEEEeeecccCCCCCcccHHHHHHHHHHhhh---cCCCcEEEECCCCeEEEeeeEecCccCCceEEEE--EEEEEeC
Confidence 467899999999999999999999999995 675 567889999999 6999999985 6788877 4999999
Q ss_pred CCCCCCCCcCCCCCCCcccccCCCcceeeEEecCeeeeEEecc-CcEEeCCCchhhhhhccC---CCCCCCCeeEEEEee
Q 013402 108 QDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGE-NGTIDGQGAIWWNMWRQR---TLPFTRPNLIEFMNS 183 (443)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~-~G~idG~G~~~~~~~~~~---~~~~~~~~~i~~~~~ 183 (443)
.+.++|+.. ..++.+.+++||+|+|. .|+|||+|+.||...... .....||++|.|.+|
T Consensus 138 ~d~~~y~~~-----------------~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~ 200 (431)
T PLN02218 138 QKRSDYKDI-----------------SKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNS 200 (431)
T ss_pred CChhhcccc-----------------ccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEcc
Confidence 998888531 24578889999999994 399999999999754321 123469999999999
Q ss_pred cceEEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCcccccccc
Q 013402 184 RSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAY 263 (443)
Q Consensus 184 ~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~ 263 (443)
+|++|++++++|+|+|++++..|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||++|++
T Consensus 201 ~nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksg-------- 272 (431)
T PLN02218 201 KSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESG-------- 272 (431)
T ss_pred ccEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCC--------
Confidence 999999999999999999999999999999999998889999999999999999999999999999999997
Q ss_pred CCCcccEEEEEEEEeCCCceEEEccccC----CcEEEEEEEeeEEeCCceeEEEEeecCCCceEEEEEEEeEEEcccCee
Q 013402 264 GHPSSGITIRRVTGSSPFSGIAVGSETS----GGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKG 339 (443)
Q Consensus 264 ~~~~~ni~i~n~~~~~~~~gi~igs~~~----~~v~nI~i~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~ 339 (443)
++||+|+||+|.. ++||+|||+.. +.|+||+|+||++.++.+|++||++++++|.|+||+|+|++|+++++|
T Consensus 273 ---s~nI~I~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~p 348 (431)
T PLN02218 273 ---SQNVQINDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNP 348 (431)
T ss_pred ---CceEEEEeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEccccc
Confidence 8999999999965 79999999863 479999999999999999999999999899999999999999999999
Q ss_pred EEEEcccCCCCCCCCCCCCCCeEEeEEEEeEEEecc-CeeEEEEecCCCCeeeEEEEeEEEEeeCCCCCCCeeeeecccC
Q 013402 340 IKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKV-QQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGS 418 (443)
Q Consensus 340 i~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~-~~~~~i~g~~~~~i~ni~~~nv~~~~~~~~~~~~~~c~~v~~~ 418 (443)
|.|++.|.........++ .+.|+||+|+||+++.+ ..++.+.|.++.||+||+|+||+++.. ...|.||.+.
T Consensus 349 I~Idq~Y~~~~~~~~~~s-~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~------~~~c~n~~~~ 421 (431)
T PLN02218 349 IIIDQDYCDKSKCTSQQS-AVQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG------KATCTNANVV 421 (431)
T ss_pred EEEEeeccCCCCCCCCCC-CeEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC------eeeEEEeeEE
Confidence 999999976433222233 34899999999999876 467889999999999999999999852 3679999998
Q ss_pred cCcccCCCCC
Q 013402 419 AYQVKPWPCS 428 (443)
Q Consensus 419 ~~~~~p~~~~ 428 (443)
.....|+.|.
T Consensus 422 ~~~~~~p~c~ 431 (431)
T PLN02218 422 DKGAVSPQCN 431 (431)
T ss_pred EcccCCCCCC
Confidence 8777777885
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=8.1e-69 Score=532.33 Aligned_cols=362 Identities=29% Similarity=0.462 Sum_probs=310.4
Q ss_pred CCceEEEeeccccCCCcchhHHHHHHHHHH-hhhhccCCCeEEEECCC-ceEEEEeEecccc---EEEEccCcEEEecCC
Q 013402 35 RNDKISITDFGGVGDGKTLNTKAFREAIYR-IQHLRRSGGTLLYVPPG-VYLTGSFNLTSHM---TLYLAKGAVIKATQD 109 (443)
Q Consensus 35 ~~~~~nV~dyGa~gDg~tddt~aiq~Ai~~-~~~~~~~gg~~V~ip~G-~Y~~~~l~l~s~~---tl~~~~ga~l~~~~~ 109 (443)
++.++||++|||+|||.+|||+|||+||++ |+ +.+|++|+||+| +|++++|.|+++. .+.++..++|+++..
T Consensus 20 ~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~---~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~ 96 (456)
T PLN03003 20 SSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCS---GTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK 96 (456)
T ss_pred eeeEEehhhcCCCCCCCcccHHHHHHHHHHhhh---ccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc
Confidence 567899999999999999999999999998 53 578899999999 5889999998743 355666788877543
Q ss_pred CCCCCCcCCCCCCCcccccCCCcceeeEEecCeeeeEEeccCcEEeCCCchhhhhhccCCCCCCCCeeEEEEeecceEEE
Q 013402 110 TWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIIS 189 (443)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~~G~idG~G~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~ 189 (443)
..|. +. ...+|.+.++++++|+|. |+|||+|+.||+.. ..||++++|.+|+|++|+
T Consensus 97 -~~w~----------~~------~~~wI~f~~~~~i~I~G~-GtIDGqG~~wW~~~------~~rP~~l~f~~~~nv~I~ 152 (456)
T PLN03003 97 -GNWK----------GD------KDQWILFTDIEGLVIEGD-GEINGQGSSWWEHK------GSRPTALKFRSCNNLRLS 152 (456)
T ss_pred -cccc----------CC------CcceEEEEcccceEEecc-ceEeCCchhhhhcc------cCCceEEEEEecCCcEEe
Confidence 2332 11 125789999999999998 99999999999742 368999999999999999
Q ss_pred eEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccccccCCCccc
Q 013402 190 NVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSG 269 (443)
Q Consensus 190 ~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~n 269 (443)
|++++|+|.|++++..|++|+|++++|.++..++|+||||+.+|+||+|+||+|.++||||++|++ ++|
T Consensus 153 gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksg-----------s~N 221 (456)
T PLN03003 153 GLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSN 221 (456)
T ss_pred CeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCC-----------Ccc
Confidence 999999999999999999999999999998889999999999999999999999999999999997 899
Q ss_pred EEEEEEEEeCCCceEEEccccC----CcEEEEEEEeeEEeCCceeEEEEeecCCCceEEEEEEEeEEEcccCeeEEEEcc
Q 013402 270 ITIRRVTGSSPFSGIAVGSETS----GGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGD 345 (443)
Q Consensus 270 i~i~n~~~~~~~~gi~igs~~~----~~v~nI~i~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~ 345 (443)
|+|+||+|.. ++||+|||+.. +.|+||+|+||++.++.+|++||+|.+++|.|+||+|+|++|+++.+||.|++.
T Consensus 222 I~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~ 300 (456)
T PLN03003 222 IHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQF 300 (456)
T ss_pred EEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcc
Confidence 9999999965 79999999864 359999999999999999999999998889999999999999999999999999
Q ss_pred cCCCCC-CCC-CCCCCCeEEeEEEEeEEEecc-CeeEEEEecCCCCeeeEEEEeEEEEeeC--CCCCCCeeeeecccCcC
Q 013402 346 VGDHPD-DKF-NPNALPVVNGITIKDVWGTKV-QQSGLIQGLKNSPFTGICLSNINLQGVA--GPTSPPLKCSDVSGSAY 420 (443)
Q Consensus 346 ~~~~~~-~~~-~~~~~~~i~nIt~~nI~~~~~-~~~~~i~g~~~~~i~ni~~~nv~~~~~~--~~~~~~~~c~~v~~~~~ 420 (443)
|..... ..+ .+...+.|+||+|+||+++.. ..++.|.|+++.||+||+|+||+++... .+....+.|.||.+...
T Consensus 301 Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~ 380 (456)
T PLN03003 301 YNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGAST 380 (456)
T ss_pred cCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccC
Confidence 974322 111 122235899999999999765 4578899999999999999999999873 23345799999999886
Q ss_pred cccC-CCCCCCcCCCC
Q 013402 421 QVKP-WPCSELSSSQQ 435 (443)
Q Consensus 421 ~~~p-~~~~~~~~~~~ 435 (443)
.+.| .+|++++...+
T Consensus 381 ~~~~~~~C~~~~~~~~ 396 (456)
T PLN03003 381 IAVPGLECLELSTDMF 396 (456)
T ss_pred ceECCCCccccCCCcc
Confidence 5555 48999765443
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=1.5e-67 Score=520.77 Aligned_cols=348 Identities=27% Similarity=0.424 Sum_probs=304.9
Q ss_pred CCceEEEeeccccCCCcchhHHHHHHHHHHhhhhccCC--CeEEEECCC-ceEEEEeEecc-----ccEEEEccCcEEEe
Q 013402 35 RNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSG--GTLLYVPPG-VYLTGSFNLTS-----HMTLYLAKGAVIKA 106 (443)
Q Consensus 35 ~~~~~nV~dyGa~gDg~tddt~aiq~Ai~~~~~~~~~g--g~~V~ip~G-~Y~~~~l~l~s-----~~tl~~~~ga~l~~ 106 (443)
.++++||+||||+|||++|||+|||+||++|. ..+ +++|+|||| +|++++|.|++ +++|+++ ++|++
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac---~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~--G~l~~ 117 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATC---GGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLD--GIIVA 117 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHc---cCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEc--cEEEc
Confidence 55789999999999999999999999998753 223 379999999 79999999995 6777776 89999
Q ss_pred cCCCCCCCCcCCCCCCCcccccCCCcceeeEEecCeeeeEEeccCcEEeCCCchhhhhhccCCCCCCCCeeEEEEeecce
Q 013402 107 TQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSI 186 (443)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~~G~idG~G~~~~~~~~~~~~~~~~~~~i~~~~~~nv 186 (443)
+.+..+|+... ...|+.+.+++|++|+|. |+|||+|+.||. +++|.+|+|+
T Consensus 118 ~~d~~~w~~~~---------------~~~wi~f~~v~nv~I~G~-G~IDG~G~~ww~-------------~l~~~~~~nv 168 (409)
T PLN03010 118 PSNIVAWSNPK---------------SQMWISFSTVSGLMIDGS-GTIDGRGSSFWE-------------ALHISKCDNL 168 (409)
T ss_pred cCChhhccCCC---------------CcceEEEecccccEEeec-eEEeCCCccccc-------------eEEEEeecCe
Confidence 99988885311 124677899999999998 999999999995 5899999999
Q ss_pred EEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccccccCCC
Q 013402 187 IISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHP 266 (443)
Q Consensus 187 ~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~ 266 (443)
+|++++++|+|.|++++..|++++|++++|.++..++|+||||+.+|++|+|+||+|.++||||++|++
T Consensus 169 ~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksg----------- 237 (409)
T PLN03010 169 TINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG----------- 237 (409)
T ss_pred EEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCC-----------
Confidence 999999999999999999999999999999998888999999999999999999999999999999997
Q ss_pred cccEEEEEEEEeCCCceEEEccccCC----cEEEEEEEeeEEeCCceeEEEEeecCCCceEEEEEEEeEEEcccCeeEEE
Q 013402 267 SSGITIRRVTGSSPFSGIAVGSETSG----GVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKI 342 (443)
Q Consensus 267 ~~ni~i~n~~~~~~~~gi~igs~~~~----~v~nI~i~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i 342 (443)
+.++.|+++.|.. ++||+|||+..+ .|+||+|+||+|.++.+|++||++.+++|.|+||+|+||+|+++++||.|
T Consensus 238 s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I 316 (409)
T PLN03010 238 SSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIII 316 (409)
T ss_pred CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEE
Confidence 6789999999865 789999998554 49999999999999999999999998889999999999999999999999
Q ss_pred EcccCCCCCCCCCCCCCCeEEeEEEEeEEEecc-CeeEEEEecCCCCeeeEEEEeEEEEeeCCCCCCCeeeeecccCc-C
Q 013402 343 AGDVGDHPDDKFNPNALPVVNGITIKDVWGTKV-QQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSA-Y 420 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~-~~~~~i~g~~~~~i~ni~~~nv~~~~~~~~~~~~~~c~~v~~~~-~ 420 (443)
++.|........++.....|+||+|+||+++.. ..++.|.|.+..+|+||+|+||+++...+.. +.+.|.|+.+.. .
T Consensus 317 ~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~-~~~~C~nv~g~~~~ 395 (409)
T PLN03010 317 DQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGEK-PKVECQNVEGESSD 395 (409)
T ss_pred EeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCCc-cceEeeCccccccC
Confidence 999875332222233334899999999999865 4678999999999999999999999886553 579999999966 4
Q ss_pred cccCCCCCC
Q 013402 421 QVKPWPCSE 429 (443)
Q Consensus 421 ~~~p~~~~~ 429 (443)
...|.+|++
T Consensus 396 ~~~~~~C~~ 404 (409)
T PLN03010 396 TDLMRDCFK 404 (409)
T ss_pred CCCCCcccc
Confidence 567778995
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=2.7e-54 Score=422.02 Aligned_cols=312 Identities=38% Similarity=0.632 Sum_probs=262.0
Q ss_pred hccCCCeEEEECCCceEEEEeEec----cccEEEEccCcEEEecCCCCCCCCcCCCCCCCcccccCCCcceeeEEecCee
Q 013402 68 LRRSGGTLLYVPPGVYLTGSFNLT----SHMTLYLAKGAVIKATQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQ 143 (443)
Q Consensus 68 ~~~~gg~~V~ip~G~Y~~~~l~l~----s~~tl~~~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 143 (443)
|++.++++|+||+|+|+++++.|+ ++.++.++ +++.++.....++ . ..+|.+.+++
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~--G~~~~~~~~~~~~-----------------~-~~~i~~~~~~ 60 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTLD--GTINFSYDNWEGP-----------------N-SALIYAENAE 60 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECETTCEEEEE--SEEEEG-EESTSE-------------------SEEEEEESEE
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCCCeEEEEE--EEEEeCCCcccCC-----------------c-cEEEEEEceE
Confidence 345677899999999999999999 55666665 5555542222111 1 4789999999
Q ss_pred eeEEeccCcEEeCCCchhhhhhcc-CCCCCCCCeeEEEEeecceEEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCC
Q 013402 144 DVVITGENGTIDGQGAIWWNMWRQ-RTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADS 222 (443)
Q Consensus 144 nv~I~G~~G~idG~G~~~~~~~~~-~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~ 222 (443)
|++|+|. |+|||+|+.||+.... ......||+++.|.+|+|++|++++++|+|.|++++..|++++|++++|.++...
T Consensus 61 ni~i~G~-G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~ 139 (326)
T PF00295_consen 61 NITITGK-GTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANS 139 (326)
T ss_dssp EEECTTS-SEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGC
T ss_pred EEEecCC-ceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCC
Confidence 9999998 9999999999985433 2345679999999999999999999999999999999999999999999998778
Q ss_pred CCCCeecccCCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCC----cEEEEE
Q 013402 223 PNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSG----GVENVL 298 (443)
Q Consensus 223 ~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~----~v~nI~ 298 (443)
+|+|||++.+|+||+|+||+|+++||||++|++ ..||+|+||+|.+ ++|++|||+..+ .|+||+
T Consensus 140 ~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~-----------~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~ 207 (326)
T PF00295_consen 140 PNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSG-----------SGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVT 207 (326)
T ss_dssp TS--SEEEESEEEEEEESEEEESSSESEEESSE-----------ECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEE
T ss_pred CCcceEEEEeeeEEEEEEeecccccCccccccc-----------ccceEEEeEEEec-cccceeeeccCCccccEEEeEE
Confidence 999999999999999999999999999999996 5699999999977 689999999865 489999
Q ss_pred EEeeEEeCCceeEEEEeecCCCceEEEEEEEeEEEcccCeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEeEEEeccC-e
Q 013402 299 AEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQ-Q 377 (443)
Q Consensus 299 i~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~ 377 (443)
|+||++.++.+|++||++++++|.|+||+|||++|+++.+||.|++.|...... ..+...+.|+||+|+||+++... .
T Consensus 208 ~~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~-~~~~~~~~i~nI~~~nitg~~~~~~ 286 (326)
T PF00295_consen 208 FENCTIINTDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGPC-GKPPSGVSISNITFRNITGTSAGSS 286 (326)
T ss_dssp EEEEEEESESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEES-SCSSSSSEEEEEEEEEEEEEESTSE
T ss_pred EEEEEeeccceEEEEEEecccceEEeceEEEEEEecCCceEEEEEecccccccc-CcccCCceEEEEEEEeeEEEeccce
Confidence 999999999999999999988999999999999999999999999988752211 12223358999999999999886 7
Q ss_pred eEEEEecCCCCeeeEEEEeEEEEeeCCCCCCCeeeeeccc
Q 013402 378 SGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSG 417 (443)
Q Consensus 378 ~~~i~g~~~~~i~ni~~~nv~~~~~~~~~~~~~~c~~v~~ 417 (443)
++.+.|.++.+|+||+|+||+++. . ...+.|.|+..
T Consensus 287 ~i~i~~~~~~~~~ni~f~nv~i~~-g---~~~~~c~nv~~ 322 (326)
T PF00295_consen 287 AISIDCSPGSPCSNITFENVNITG-G---KKPAQCKNVPS 322 (326)
T ss_dssp EEEEE-BTTSSEEEEEEEEEEEES-S---BSESEEBSCCT
T ss_pred EEEEEECCcCcEEeEEEEeEEEEc-C---CcCeEEECCCC
Confidence 899999999999999999999999 3 24589999865
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.7e-47 Score=383.18 Aligned_cols=301 Identities=37% Similarity=0.577 Sum_probs=256.1
Q ss_pred CCceEEEeeccccCCCcchhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEeccccEEEEccCcEEEecCCCCCCC
Q 013402 35 RNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWP 114 (443)
Q Consensus 35 ~~~~~nV~dyGa~gDg~tddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l~s~~tl~~~~ga~l~~~~~~~~~~ 114 (443)
....++|++|||+|||.+++++|||+||++|+ +++|++|+||+|+|+.++|+|||+++|++++|++|+++.++++|+
T Consensus 79 ~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca---~a~Gg~V~lPaGtylsg~l~LKS~~~L~l~egatl~~~~~p~~y~ 155 (542)
T COG5434 79 TDTAFSVSDDGAVGDGATDNTAAIQAAIDACA---SAGGGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLASSNPKDYP 155 (542)
T ss_pred ccceeeeccccccccCCccCHHHHHHHHHhhh---hhcCceEEECCceeEeeeEEEecccEEEecCCceeeCCCChhhcc
Confidence 45689999999999999999999999999996 579999999999999999999999999999999999999999998
Q ss_pred C--------cCCC---------CCCCcccccCCCcceeeEEecCeeeeE-EeccCcEEeCCC----chhhhhhc--cCCC
Q 013402 115 L--------IAPL---------PSYGRGRERPGGRYMSFIHGDGLQDVV-ITGENGTIDGQG----AIWWNMWR--QRTL 170 (443)
Q Consensus 115 ~--------~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~nv~-I~G~~G~idG~G----~~~~~~~~--~~~~ 170 (443)
. ..++ ..+++|.. .. +..++.....+|.. |.|. |+++|++ ..||.... ....
T Consensus 156 ~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~--d~-~~~~~~~~~~~n~~~i~g~-~~i~g~~~~~g~~~~~~~g~~~~~i 231 (542)
T COG5434 156 SFTSRFNGNSGPYVYATDSDNAMISGEGLA--DG-KADLLIAGNSSNRKEIWGK-GTIDGNGYKRGDKWFSGLGAVETRI 231 (542)
T ss_pred ccccccccccCcceeeecccCceeeeeccc--cc-CcccceeccCCceEEEecc-ceecCccccchhhhhhcccchhhcc
Confidence 4 1110 01122211 11 22333333445555 8998 9999964 23775443 2222
Q ss_pred CC--CCCeeEEEEeecceEEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCc
Q 013402 171 PF--TRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 248 (443)
Q Consensus 171 ~~--~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD 248 (443)
.. .||..+.+..|+||+++|++|.+++.|++++..|++++++|++|.+.... |+|||++.+|+|++|++|+|.++||
T Consensus 232 ~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD 310 (542)
T COG5434 232 GGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDD 310 (542)
T ss_pred cccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCc
Confidence 33 69999999999999999999999999999999999999999999997655 9999999999999999999999999
Q ss_pred eEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeCCceeEEEEeecCCCceEEEEEE
Q 013402 249 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITV 328 (443)
Q Consensus 249 ~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~~~~gi~i~s~~~~~g~v~nI~~ 328 (443)
||++|++....+.....|++|+.|+||++..++.++.+|||+.++++||++|||.|.+..+|++||+..+++|.++||+|
T Consensus 311 ~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~gG~v~nI~~ 390 (542)
T COG5434 311 CIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNIVF 390 (542)
T ss_pred eEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccceeEEEEEE
Confidence 99999998877766778999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EeEEEcccCeeEEEE
Q 013402 329 SDVYMENARKGIKIA 343 (443)
Q Consensus 329 ~ni~~~~~~~~i~i~ 343 (443)
+++++.++..+..|.
T Consensus 391 ~~~~~~nv~t~~~i~ 405 (542)
T COG5434 391 EDNKMRNVKTKLSIN 405 (542)
T ss_pred ecccccCcccceeee
Confidence 999999986444443
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.96 E-value=3.8e-27 Score=230.07 Aligned_cols=230 Identities=22% Similarity=0.203 Sum_probs=177.4
Q ss_pred CCceEEEeeccccCCCcchhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEeccccEEEEccCcEEEecCCCCCCC
Q 013402 35 RNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWP 114 (443)
Q Consensus 35 ~~~~~nV~dyGa~gDg~tddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l~s~~tl~~~~ga~l~~~~~~~~~~ 114 (443)
+.+.+++++|||+|||.+|+|+|||+||++|+ +++++|++|||+|+.++|.|+++++|+++++++.+..+.
T Consensus 34 p~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa----~gG~tV~Lp~G~Y~~G~L~L~spltL~G~~gAt~~vIdG----- 104 (455)
T TIGR03808 34 STLGRDATQYGVRPNSPDDQTRALQRAIDEAA----RAQTPLALPPGVYRTGPLRLPSGAQLIGVRGATRLVFTG----- 104 (455)
T ss_pred CccCCCHHHcCcCCCCcchHHHHHHHHHHHhh----cCCCEEEECCCceecccEEECCCcEEEecCCcEEEEEcC-----
Confidence 34458999999999999999999999999984 577899999999999999999999999999987321110
Q ss_pred CcCCCCCCCcccccCCCcceeeEEecCeeeeEEeccCcEEeCCCchhhhhhccCCCCCCCCeeEEEEeecceEEEeEEEe
Q 013402 115 LIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQ 194 (443)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~~G~idG~G~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~ 194 (443)
. ..++....+++|+|+|. +|+|+|..|. .++.+|++..|++++|++++|.
T Consensus 105 -----------------~-~~lIiai~A~nVTIsGL--tIdGsG~dl~----------~rdAgI~v~~a~~v~Iedn~L~ 154 (455)
T TIGR03808 105 -----------------G-PSLLSSEGADGIGLSGL--TLDGGGIPLP----------QRRGLIHCQGGRDVRITDCEIT 154 (455)
T ss_pred -----------------C-ceEEEEecCCCeEEEee--EEEeCCCccc----------CCCCEEEEccCCceEEEeeEEE
Confidence 0 25677788999999997 9999997652 4677999999999999999999
Q ss_pred cCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEec-CCceEEEccC------------------
Q 013402 195 NSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIST-GDDLVAVKSG------------------ 255 (443)
Q Consensus 195 n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gdD~i~i~sg------------------ 255 (443)
++..|+|.+..|+ ..|.+.+|.... ..+|+++.+++.+|++++|.. .|++|.+..-
T Consensus 155 gsg~FGI~L~~~~-~~I~~N~I~g~~----~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~ 229 (455)
T TIGR03808 155 GSGGNGIWLETVS-GDISGNTITQIA----VTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIK 229 (455)
T ss_pred cCCcceEEEEcCc-ceEecceEeccc----cceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeecccccccc
Confidence 9999999999999 777777777643 455888888888888888877 6666666521
Q ss_pred -----cccccccc-CCCcccEEEEEEEEeCCC-ceEEEccccCCcEEEEEEEeeEEeCCce-eEEE
Q 013402 256 -----WDEYGIAY-GHPSSGITIRRVTGSSPF-SGIAVGSETSGGVENVLAEHINLYNVGV-GIHV 313 (443)
Q Consensus 256 -----~~~~g~~~-~~~~~ni~i~n~~~~~~~-~gi~igs~~~~~v~nI~i~n~~~~~~~~-gi~i 313 (443)
..++|-.. -+.+.+++|+++++.... +||.+.+ .+|+.|++++|.+.+. |+..
T Consensus 230 a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~ns-----ss~~~i~~N~~~~~R~~alhy 290 (455)
T TIGR03808 230 AGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNS-----ASNIQITGNSVSDVREVALYS 290 (455)
T ss_pred ccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEc-----ccCcEEECcEeeeeeeeEEEE
Confidence 12333111 123678888888887776 7887764 3466777777776655 5543
No 10
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.89 E-value=8.5e-21 Score=189.47 Aligned_cols=198 Identities=18% Similarity=0.187 Sum_probs=163.9
Q ss_pred eeEEEEeecceEEEeEEEecCC---Cc--------eEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEe
Q 013402 176 NLIEFMNSRSIIISNVIFQNSP---FW--------NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIS 244 (443)
Q Consensus 176 ~~i~~~~~~nv~I~~v~i~n~~---~~--------~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~ 244 (443)
..|.+.++++++|.|--..+.. .| .+.+..|+++.|+++++.+++ ..-+++..|++|+|++.+|.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp----~w~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSP----MAHIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCC----cEEEEEeccccEEEEEEEEe
Confidence 4799999999999985555432 23 478899999999999999976 34588999999999999998
Q ss_pred c-----CCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeCCceeEEEEeecCC
Q 013402 245 T-----GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGR 319 (443)
Q Consensus 245 ~-----gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~~~~gi~i~s~~~~ 319 (443)
+ ..|||.+.+ ++||+|+||++.+++++|+|++. .+||+|+||++... +||.|+|....
T Consensus 181 ap~~spNTDGIDi~~------------S~nV~I~n~~I~tGDDCIaiksg----s~NI~I~n~~c~~G-HGISIGSlg~~ 243 (456)
T PLN03003 181 APESSPNTDGIDVGA------------SSNVVIQDCIIATGDDCIAINSG----TSNIHISGIDCGPG-HGISIGSLGKD 243 (456)
T ss_pred CCCCCCCCCcEeecC------------cceEEEEecEEecCCCeEEeCCC----CccEEEEeeEEECC-CCeEEeeccCC
Confidence 7 458888876 89999999999999999999974 57999999999764 89999997432
Q ss_pred --CceEEEEEEEeEEEcccCeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEeEEEeccCeeEEEEecC------------
Q 013402 320 --GGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLK------------ 385 (443)
Q Consensus 320 --~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~------------ 385 (443)
.+.|+||+++|+++.+..++++|+.+.+ +.+.++||+|+||++.+...|+.|....
T Consensus 244 g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~ 313 (456)
T PLN03003 244 GETATVENVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRK 313 (456)
T ss_pred CCcceEEEEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCC
Confidence 2569999999999999999999997522 2358999999999999998888774221
Q ss_pred --CCCeeeEEEEeEEEEeeCC
Q 013402 386 --NSPFTGICLSNINLQGVAG 404 (443)
Q Consensus 386 --~~~i~ni~~~nv~~~~~~~ 404 (443)
...++||+|+||+.+....
T Consensus 314 ~s~v~IsnI~f~NI~GTs~~~ 334 (456)
T PLN03003 314 SSAVEVSKVVFSNFIGTSKSE 334 (456)
T ss_pred CCCcEEEeEEEEeEEEEeCcc
Confidence 1258999999999877643
No 11
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.89 E-value=2e-21 Score=180.79 Aligned_cols=211 Identities=29% Similarity=0.338 Sum_probs=120.2
Q ss_pred eEEEeeccccCCCcchhHHHHHHHHHHhhhhccCCCeEEEECCCceEEE-EeEeccccEEEEccCc-EEEe-cCCCCCCC
Q 013402 38 KISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTG-SFNLTSHMTLYLAKGA-VIKA-TQDTWNWP 114 (443)
Q Consensus 38 ~~nV~dyGa~gDg~tddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~-~l~l~s~~tl~~~~ga-~l~~-~~~~~~~~ 114 (443)
.+||++|||+|||++|||+|||+||+++. +.++++|+||||+|+++ +|.++++++|+++.+. ++.. ......+.
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~---~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~ 77 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAA---AAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFS 77 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHC---STTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSC
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhcc---cCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccc
Confidence 37999999999999999999999996554 68999999999999999 6999999999998763 3333 22222211
Q ss_pred CcCCCCCCCcccccCCCcceeeEEec--------CeeeeEEeccCcEEeCCCchhhhhhccCCCCCCCCeeEEEEeecce
Q 013402 115 LIAPLPSYGRGRERPGGRYMSFIHGD--------GLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSI 186 (443)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~i~~~--------~~~nv~I~G~~G~idG~G~~~~~~~~~~~~~~~~~~~i~~~~~~nv 186 (443)
.. ....... .++|++|.| .+...- .....+.+..+.++
T Consensus 78 ~~-----------------~~~~~~~~~~~~~~~~i~nl~i~~-------~~~~~~----------~~~~~i~~~~~~~~ 123 (225)
T PF12708_consen 78 VV-----------------PGIGVFDSGNSNIGIQIRNLTIDG-------NGIDPN----------NNNNGIRFNSSQNV 123 (225)
T ss_dssp CE-----------------EEEEECCSCSCCEEEEEEEEEEEE-------TCGCE-----------SCEEEEEETTEEEE
T ss_pred cc-----------------cceeeeecCCCCceEEEEeeEEEc-------ccccCC----------CCceEEEEEeCCeE
Confidence 00 0011111 134454544 332110 01345777778888
Q ss_pred EEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccC-CccEEEEeeEEecCCceEEEccCccccccccCC
Q 013402 187 IISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDS-SSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGH 265 (443)
Q Consensus 187 ~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~-s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~ 265 (443)
.|+++++.+....++.+..++...+.+..... ++.+.. +.++.+.+|.+..+++++...
T Consensus 124 ~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------ 183 (225)
T PF12708_consen 124 SISNVRIENSGGDGIYFNTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIILG------------ 183 (225)
T ss_dssp EEEEEEEES-SS-SEEEECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEECE------------
T ss_pred EEEeEEEEccCccEEEEEccccCcEeecccce--------eeeeccceeEEEECCccccCCCceeEee------------
Confidence 88888888776666666655444443332221 233322 244555666666666653211
Q ss_pred CcccEEEEEEEEeC-CCceEEEccccCCcEEEEEEEeeEEeCCceeE
Q 013402 266 PSSGITIRRVTGSS-PFSGIAVGSETSGGVENVLAEHINLYNVGVGI 311 (443)
Q Consensus 266 ~~~ni~i~n~~~~~-~~~gi~igs~~~~~v~nI~i~n~~~~~~~~gi 311 (443)
.+++.++||++.. ...||.+.... +++++|+++.++..|+
T Consensus 184 -~~~~~i~n~~~~~~~~~gi~i~~~~-----~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 184 -NNNITISNNTFEGNCGNGINIEGGS-----NIIISNNTIENCDDGI 224 (225)
T ss_dssp -EEEEEEECEEEESSSSESEEEEECS-----EEEEEEEEEESSSEEE
T ss_pred -cceEEEEeEEECCccceeEEEECCe-----EEEEEeEEEECCccCc
Confidence 3566666666665 35666554322 3556666666555554
No 12
>PLN03010 polygalacturonase
Probab=99.88 E-value=2.7e-20 Score=184.81 Aligned_cols=207 Identities=18% Similarity=0.219 Sum_probs=166.1
Q ss_pred eeEEEEeecceEEEeEEEecCC---Cc-eEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEec-----C
Q 013402 176 NLIEFMNSRSIIISNVIFQNSP---FW-NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIST-----G 246 (443)
Q Consensus 176 ~~i~~~~~~nv~I~~v~i~n~~---~~-~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-----g 246 (443)
..+.|.+.+|+.|.|--..+.. .| .+.+..|++++|+++++.+++ ..-+++..|++|+|+|..|.+ .
T Consensus 131 ~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp----~~~i~i~~~~nv~i~~i~I~a~~~s~N 206 (409)
T PLN03010 131 MWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSP----KNHISIKTCNYVAISKINILAPETSPN 206 (409)
T ss_pred ceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCC----ceEEEEeccccEEEEEEEEeCCCCCCC
Confidence 3588999999999986666642 34 488999999999999999976 345888999999999999986 4
Q ss_pred CceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeCCceeEEEEeecCC--CceEE
Q 013402 247 DDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGR--GGFIR 324 (443)
Q Consensus 247 dD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~~~~gi~i~s~~~~--~g~v~ 324 (443)
.|||.+.+ ++||+|+||++.+++++|+|++. ..++.|+++++... +|+.|+|.... ...|+
T Consensus 207 TDGiDi~~------------s~nV~I~n~~I~~gDDcIaiksg----s~ni~I~~~~C~~g-HGisIGS~g~~~~~~~V~ 269 (409)
T PLN03010 207 TDGIDISY------------STNINIFDSTIQTGDDCIAINSG----SSNINITQINCGPG-HGISVGSLGADGANAKVS 269 (409)
T ss_pred CCceeeec------------cceEEEEeeEEecCCCeEEecCC----CCcEEEEEEEeECc-CCEEEccCCCCCCCCeeE
Confidence 57888876 79999999999999999999985 34788888888654 89999997432 24599
Q ss_pred EEEEEeEEEcccCeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEeEEEeccCeeEEEEecC---C---------CCeeeE
Q 013402 325 NITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLK---N---------SPFTGI 392 (443)
Q Consensus 325 nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~---~---------~~i~ni 392 (443)
||+|+|+++.+..++++|+.+.+ +.+.++||+|+||++++...|+.|...+ + ..++||
T Consensus 270 nV~v~n~~i~~t~~GirIKt~~G----------~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi 339 (409)
T PLN03010 270 DVHVTHCTFNQTTNGARIKTWQG----------GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNV 339 (409)
T ss_pred EEEEEeeEEeCCCcceEEEEecC----------CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeE
Confidence 99999999999999999997532 2358999999999999998888874321 1 258999
Q ss_pred EEEeEEEEeeCCCCCCCeeeee
Q 013402 393 CLSNINLQGVAGPTSPPLKCSD 414 (443)
Q Consensus 393 ~~~nv~~~~~~~~~~~~~~c~~ 414 (443)
+|+||+.+..... ...+.|+.
T Consensus 340 ~~~ni~GT~~~~~-~i~l~Cs~ 360 (409)
T PLN03010 340 KYVGFRGTTSNEN-AITLKCSA 360 (409)
T ss_pred EEEeeEEEeCCCc-cEEEEeCC
Confidence 9999999876543 23455543
No 13
>PLN02218 polygalacturonase ADPG
Probab=99.88 E-value=7.7e-21 Score=190.37 Aligned_cols=197 Identities=14% Similarity=0.221 Sum_probs=161.8
Q ss_pred eeEEEEeecceEEEe---EEEecCC--Cc-----------------eEEeeeeeeEEEEeEEEECCCCCCCCCeecccCC
Q 013402 176 NLIEFMNSRSIIISN---VIFQNSP--FW-----------------NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSS 233 (443)
Q Consensus 176 ~~i~~~~~~nv~I~~---v~i~n~~--~~-----------------~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s 233 (443)
..|.+.+.+|++|.| =+|...+ .| .+.+..|+|++|+++++.+++ ..-+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp----~w~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQ----QIQISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCC----CEEEEEEce
Confidence 358889999999998 3343221 12 367889999999999999976 345899999
Q ss_pred ccEEEEeeEEec-----CCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeCCc
Q 013402 234 SNVCIEDSYIST-----GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVG 308 (443)
Q Consensus 234 ~nv~I~n~~i~~-----gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~~~ 308 (443)
+||+|+|.+|.+ ..|||.+.+ ++||+|+||++..++++|+|++. .+||+|+||++.. .
T Consensus 224 ~nV~i~~v~I~a~~~spNTDGIdi~s------------s~nV~I~n~~I~tGDDcIaIksg----s~nI~I~n~~c~~-G 286 (431)
T PLN02218 224 SNVQVSNVVVTAPADSPNTDGIHITN------------TQNIRVSNSIIGTGDDCISIESG----SQNVQINDITCGP-G 286 (431)
T ss_pred eeEEEEEEEEeCCCCCCCCCcEeecc------------cceEEEEccEEecCCceEEecCC----CceEEEEeEEEEC-C
Confidence 999999999986 568888876 89999999999999999999974 6799999999976 4
Q ss_pred eeEEEEeecCC--CceEEEEEEEeEEEcccCeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEeEEEeccCeeEEEEecC-
Q 013402 309 VGIHVKTNIGR--GGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLK- 385 (443)
Q Consensus 309 ~gi~i~s~~~~--~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~- 385 (443)
+|+.|+|.... .+.|+||+++|+++.+..++++|+.+. .+.+.++||+|+||++.+...|+.|....
T Consensus 287 HGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~----------Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~ 356 (431)
T PLN02218 287 HGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ----------GGSGTASNIIFQNIQMENVKNPIIIDQDYC 356 (431)
T ss_pred CCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecC----------CCCeEEEEEEEEeEEEEcccccEEEEeecc
Confidence 89999987422 367999999999999999999999642 22358999999999999998888775321
Q ss_pred ----------CCCeeeEEEEeEEEEeeC
Q 013402 386 ----------NSPFTGICLSNINLQGVA 403 (443)
Q Consensus 386 ----------~~~i~ni~~~nv~~~~~~ 403 (443)
...++||+|+||+.+.+.
T Consensus 357 ~~~~~~~~~s~v~I~nI~~~NI~gtsa~ 384 (431)
T PLN02218 357 DKSKCTSQQSAVQVKNVVYRNISGTSAS 384 (431)
T ss_pred CCCCCCCCCCCeEEEEEEEEeEEEEecC
Confidence 123999999999998764
No 14
>PLN02793 Probable polygalacturonase
Probab=99.88 E-value=8.8e-20 Score=183.64 Aligned_cols=197 Identities=15% Similarity=0.191 Sum_probs=162.0
Q ss_pred eeEEEEeecceEEEeEEEecCCC---c-----------------eEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCcc
Q 013402 176 NLIEFMNSRSIIISNVIFQNSPF---W-----------------NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSN 235 (443)
Q Consensus 176 ~~i~~~~~~nv~I~~v~i~n~~~---~-----------------~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~n 235 (443)
..|.+.+.+|++|.|--..+... | .+.+..|++++|+++++.+++ ..-+++..|++
T Consensus 135 ~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp----~~~i~~~~~~n 210 (443)
T PLN02793 135 KWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ----QMHIAFTNCRR 210 (443)
T ss_pred eEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC----CeEEEEEccCc
Confidence 47888999999999865544221 2 367889999999999999976 34588899999
Q ss_pred EEEEeeEEec-----CCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeCCcee
Q 013402 236 VCIEDSYIST-----GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVG 310 (443)
Q Consensus 236 v~I~n~~i~~-----gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~~~~g 310 (443)
|+|++.+|.+ ..|||.+.+ ++||+|+||++.+++++|+|++ +.+||+|+||++... +|
T Consensus 211 v~i~~l~I~~p~~spNTDGIdi~~------------s~nV~I~n~~I~~gDDcIaik~----~s~nI~I~n~~c~~G-hG 273 (443)
T PLN02793 211 VTISGLKVIAPATSPNTDGIHISA------------SRGVVIKDSIVRTGDDCISIVG----NSSRIKIRNIACGPG-HG 273 (443)
T ss_pred EEEEEEEEECCCCCCCCCcEeeec------------cceEEEEeCEEeCCCCeEEecC----CcCCEEEEEeEEeCC-cc
Confidence 9999999986 568888877 8999999999999999999986 357999999999765 89
Q ss_pred EEEEeecC--CCceEEEEEEEeEEEcccCeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEeEEEeccCeeEEEEecC---
Q 013402 311 IHVKTNIG--RGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLK--- 385 (443)
Q Consensus 311 i~i~s~~~--~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~--- 385 (443)
+.|+|... ..+.|+||+|+|+++.+..++++|+.+.+ +.+.++||+|+||++++...|+.|....
T Consensus 274 isIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g----------~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~ 343 (443)
T PLN02793 274 ISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG----------GSGNASKITFQNIFMENVSNPIIIDQYYCDS 343 (443)
T ss_pred EEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC----------CCEEEEEEEEEeEEEecCCceEEEEeeecCC
Confidence 99999632 23679999999999999999999997532 2358999999999999998888875321
Q ss_pred C---------CCeeeEEEEeEEEEeeC
Q 013402 386 N---------SPFTGICLSNINLQGVA 403 (443)
Q Consensus 386 ~---------~~i~ni~~~nv~~~~~~ 403 (443)
. ..++||+|+||+.+...
T Consensus 344 ~~~~~~~ts~v~I~nI~~~nI~Gt~~~ 370 (443)
T PLN02793 344 RKPCANQTSAVKVENISFVHIKGTSAT 370 (443)
T ss_pred CCCCCCCCCCeEEEeEEEEEEEEEEcc
Confidence 1 24899999999988753
No 15
>PLN02155 polygalacturonase
Probab=99.87 E-value=1.6e-19 Score=178.93 Aligned_cols=197 Identities=17% Similarity=0.229 Sum_probs=160.3
Q ss_pred eEEEEeecceEEEeEEEecCC--Cc--------------eEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEe
Q 013402 177 LIEFMNSRSIIISNVIFQNSP--FW--------------NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIED 240 (443)
Q Consensus 177 ~i~~~~~~nv~I~~v~i~n~~--~~--------------~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n 240 (443)
.+.+.+.+|+.|.+=+|...+ .| .+.+..|++++|+++++.+++ ..-+++..|++|+|++
T Consensus 108 wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp----~w~i~~~~~~nv~i~~ 183 (394)
T PLN02155 108 WILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQ----VSHMTLNGCTNVVVRN 183 (394)
T ss_pred eEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCC----CeEEEEECeeeEEEEE
Confidence 588899999999884443211 12 278899999999999999875 3458889999999999
Q ss_pred eEEec-----CCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeCCceeEEEEe
Q 013402 241 SYIST-----GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKT 315 (443)
Q Consensus 241 ~~i~~-----gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~~~~gi~i~s 315 (443)
.+|.+ ..|||.+.+ ++||+|+||++.+++++|+|++. .+||+|+||++... +|+.|+|
T Consensus 184 v~I~~p~~~~NtDGidi~~------------s~nV~I~~~~I~~gDDcIaik~g----s~nI~I~n~~c~~G-hGisIGS 246 (394)
T PLN02155 184 VKLVAPGNSPNTDGFHVQF------------STGVTFTGSTVQTGDDCVAIGPG----TRNFLITKLACGPG-HGVSIGS 246 (394)
T ss_pred EEEECCCCCCCCCcccccc------------ceeEEEEeeEEecCCceEEcCCC----CceEEEEEEEEECC-ceEEecc
Confidence 99987 347888776 89999999999999999999974 57999999999874 8999999
Q ss_pred ecC--CCceEEEEEEEeEEEcccCeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEeEEEeccCeeEEEEecC--------
Q 013402 316 NIG--RGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLK-------- 385 (443)
Q Consensus 316 ~~~--~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~-------- 385 (443)
... ..+.|+||+++|+++.+..++++|+.+.. .+.+.++||+|+||++++...|+.|....
T Consensus 247 ~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~---------~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~ 317 (394)
T PLN02155 247 LAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR---------PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCP 317 (394)
T ss_pred ccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC---------CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCc
Confidence 632 24789999999999999999999996422 12358999999999999998888774211
Q ss_pred ----CCCeeeEEEEeEEEEeeC
Q 013402 386 ----NSPFTGICLSNINLQGVA 403 (443)
Q Consensus 386 ----~~~i~ni~~~nv~~~~~~ 403 (443)
...++||+|+||+.+.+.
T Consensus 318 ~~~s~v~i~~It~~ni~gt~~~ 339 (394)
T PLN02155 318 NEYSGVKISQVTYKNIQGTSAT 339 (394)
T ss_pred CCCCCeEEEEEEEEeeEEEecC
Confidence 124899999999998764
No 16
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.86 E-value=5.8e-20 Score=180.00 Aligned_cols=198 Identities=24% Similarity=0.244 Sum_probs=159.4
Q ss_pred CeeEEEEeecceEEEe-EEEecCC--C---------------ceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccE
Q 013402 175 PNLIEFMNSRSIIISN-VIFQNSP--F---------------WNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNV 236 (443)
Q Consensus 175 ~~~i~~~~~~nv~I~~-v~i~n~~--~---------------~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv 236 (443)
..+|.+.+++|+.|.| -+|...+ . ..+.+..|++++|+++++.+++ ...+++..|++|
T Consensus 51 ~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp----~w~~~~~~~~nv 126 (326)
T PF00295_consen 51 SALIYAENAENITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP----FWHIHINDCDNV 126 (326)
T ss_dssp SEEEEEESEEEEECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S----SESEEEESEEEE
T ss_pred cEEEEEEceEEEEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC----eeEEEEEccCCe
Confidence 4578999999999997 3343211 1 1378899999999999999976 345888899999
Q ss_pred EEEeeEEec-----CCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeCCceeE
Q 013402 237 CIEDSYIST-----GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGI 311 (443)
Q Consensus 237 ~I~n~~i~~-----gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~~~~gi 311 (443)
+|++..|.+ ..|||.+.+ ++||+|+||++.+++++|++++... ||+|+||++.+. +|+
T Consensus 127 ~i~~i~I~~~~~~~NtDGid~~~------------s~nv~I~n~~i~~gDD~Iaiks~~~----ni~v~n~~~~~g-hGi 189 (326)
T PF00295_consen 127 TISNITINNPANSPNTDGIDIDS------------SKNVTIENCFIDNGDDCIAIKSGSG----NILVENCTCSGG-HGI 189 (326)
T ss_dssp EEESEEEEEGGGCTS--SEEEES------------EEEEEEESEEEESSSESEEESSEEC----EEEEESEEEESS-SEE
T ss_pred EEcceEEEecCCCCCcceEEEEe------------eeEEEEEEeecccccCccccccccc----ceEEEeEEEecc-ccc
Confidence 999999986 458999886 8999999999999999999997643 999999999865 899
Q ss_pred EEEeecCCC--ceEEEEEEEeEEEcccCeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEeEEEeccCeeEEEEec-C---
Q 013402 312 HVKTNIGRG--GFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGL-K--- 385 (443)
Q Consensus 312 ~i~s~~~~~--g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~-~--- 385 (443)
.|++....+ ..|+||+|+|+++.+..++++|+... .+.+.++||+|+||++++...|+.|... .
T Consensus 190 siGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~----------~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~ 259 (326)
T PF00295_consen 190 SIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP----------GGGGYVSNITFENITMENVKYPIFIDQDYRDGG 259 (326)
T ss_dssp EEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET----------TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTE
T ss_pred eeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec----------ccceEEeceEEEEEEecCCceEEEEEecccccc
Confidence 999975322 36999999999999999999999742 2235899999999999999888877421 1
Q ss_pred -------CCCeeeEEEEeEEEEeeC
Q 013402 386 -------NSPFTGICLSNINLQGVA 403 (443)
Q Consensus 386 -------~~~i~ni~~~nv~~~~~~ 403 (443)
...++||+|+||+.+...
T Consensus 260 ~~~~~~~~~~i~nI~~~nitg~~~~ 284 (326)
T PF00295_consen 260 PCGKPPSGVSISNITFRNITGTSAG 284 (326)
T ss_dssp ESSCSSSSSEEEEEEEEEEEEEEST
T ss_pred ccCcccCCceEEEEEEEeeEEEecc
Confidence 125999999999998876
No 17
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.85 E-value=3.6e-19 Score=177.20 Aligned_cols=198 Identities=19% Similarity=0.187 Sum_probs=160.0
Q ss_pred eEEEEeecceEEEeEEEecCC---Cc----------------eEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEE
Q 013402 177 LIEFMNSRSIIISNVIFQNSP---FW----------------NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVC 237 (443)
Q Consensus 177 ~i~~~~~~nv~I~~v~i~n~~---~~----------------~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~ 237 (443)
.+.+..++|++|.|--..+.. .| .+.+..|+++.|+++++.+++ ...+++..|++|+
T Consensus 115 ~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp----~w~i~~~~~~~v~ 190 (404)
T PLN02188 115 WIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSK----FFHIALVECRNFK 190 (404)
T ss_pred eEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCC----CeEEEEEccccEE
Confidence 466777889999885554432 12 257889999999999999976 4568999999999
Q ss_pred EEeeEEec-----CCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeCCceeEE
Q 013402 238 IEDSYIST-----GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIH 312 (443)
Q Consensus 238 I~n~~i~~-----gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~~~~gi~ 312 (443)
|++.+|.+ ..|||.+.+ ++||+|+||++.+++++|++++. .+||+|+|+++... +|+.
T Consensus 191 i~~v~I~~~~~spNtDGidi~~------------s~nV~I~n~~I~~GDDcIaiksg----~~nI~I~n~~c~~g-hGis 253 (404)
T PLN02188 191 GSGLKISAPSDSPNTDGIHIER------------SSGVYISDSRIGTGDDCISIGQG----NSQVTITRIRCGPG-HGIS 253 (404)
T ss_pred EEEEEEeCCCCCCCCCcEeeeC------------cccEEEEeeEEeCCCcEEEEccC----CccEEEEEEEEcCC-CcEE
Confidence 99999986 568888877 89999999999999999999974 46999999999655 8999
Q ss_pred EEeecC--CCceEEEEEEEeEEEcccCeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEeEEEeccCeeEEEEec------
Q 013402 313 VKTNIG--RGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGL------ 384 (443)
Q Consensus 313 i~s~~~--~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~------ 384 (443)
|+|... ..+.|+||+|+|+++.+..++++|+.+.+. + ..+.++||+|+||++.+...|+.|...
T Consensus 254 iGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~-------~-~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~ 325 (404)
T PLN02188 254 VGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANS-------P-GKSAATNMTFENIVMNNVTNPIIIDQKYCPFYS 325 (404)
T ss_pred eCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCC-------C-CceEEEEEEEEeEEecCccceEEEEccccCCCC
Confidence 988531 236699999999999999999999964321 1 125799999999999999888877521
Q ss_pred ------CCCCeeeEEEEeEEEEeeC
Q 013402 385 ------KNSPFTGICLSNINLQGVA 403 (443)
Q Consensus 385 ------~~~~i~ni~~~nv~~~~~~ 403 (443)
....++||+|+||+.+...
T Consensus 326 ~~~~~~s~v~I~nIt~~nI~gt~~~ 350 (404)
T PLN02188 326 CESKYPSGVTLSDIYFKNIRGTSSS 350 (404)
T ss_pred CCcCCCCCcEEEeEEEEEEEEEecC
Confidence 1134899999999998754
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.84 E-value=4.5e-18 Score=167.90 Aligned_cols=271 Identities=24% Similarity=0.287 Sum_probs=161.9
Q ss_pred CeEEEECCCceEEEE---eEecccc-EEEEccCcEEEecCCCCCCCCcCCCCCCCcccccCCCcceeeEEecCeeeeEEe
Q 013402 73 GTLLYVPPGVYLTGS---FNLTSHM-TLYLAKGAVIKATQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVIT 148 (443)
Q Consensus 73 g~~V~ip~G~Y~~~~---l~l~s~~-tl~~~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~ 148 (443)
-.++||+||+|.++. +.|++++ ++++++||.+++. +.+....+|+.|+
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~sn~~~VYlApGAyVkGA----------------------------f~~~~~~~nv~i~ 283 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLPSNTKWVYLAPGAYVKGA----------------------------FEYTDTQQNVKIT 283 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-TT--EEEE-TTEEEES-----------------------------EEE---SSEEEEE
T ss_pred cceEEeCCceEEeCCCccEEECCCccEEEEcCCcEEEEE----------------------------EEEccCCceEEEE
Confidence 359999999999984 8999885 9999999999863 2222567899999
Q ss_pred ccCcEEeCCCchhhhhhccC--------CCCCCCCeeEE---EEeecceEEEeEEEecCCCceEEeeeee----eEEEEe
Q 013402 149 GENGTIDGQGAIWWNMWRQR--------TLPFTRPNLIE---FMNSRSIIISNVIFQNSPFWNIHPVYCS----NVVIRY 213 (443)
Q Consensus 149 G~~G~idG~G~~~~~~~~~~--------~~~~~~~~~i~---~~~~~nv~I~~v~i~n~~~~~i~~~~~~----~v~i~~ 213 (443)
|. |++.|....|....... ......-+++. ...+.+++++|++|.++|+|.+.+..-+ +..|+|
T Consensus 284 G~-GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~n 362 (582)
T PF03718_consen 284 GR-GVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISN 362 (582)
T ss_dssp SS-SEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEE
T ss_pred ee-EEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeec
Confidence 99 99999776653211100 00111224565 4455699999999999999999998444 589999
Q ss_pred EEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCC--CceEEEccccC
Q 013402 214 VTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP--FSGIAVGSETS 291 (443)
Q Consensus 214 ~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~--~~gi~igs~~~ 291 (443)
.++.... -.++|||.+. ++-+|+||+++..||+|.+-. .++.|+||++|.. +.-+.+|.. .
T Consensus 363 yKqVGaW-~~qtDGi~ly--~nS~i~dcF~h~nDD~iKlYh-------------S~v~v~~~ViWk~~Ngpiiq~GW~-p 425 (582)
T PF03718_consen 363 YKQVGAW-YFQTDGIELY--PNSTIRDCFIHVNDDAIKLYH-------------SNVSVSNTVIWKNENGPIIQWGWT-P 425 (582)
T ss_dssp EEEE----CTT----B----TT-EEEEEEEEESS-SEE--S-------------TTEEEEEEEEEE-SSS-SEE--CS--
T ss_pred eeeeeeE-EeccCCcccc--CCCeeeeeEEEecCchhheee-------------cCcceeeeEEEecCCCCeEEeecc-c
Confidence 9999743 5689999985 778889999999999986653 7899999999986 334555544 3
Q ss_pred CcEEEEEEEeeEEeCCc---------eeEEEEeecC----C--C----ceEEEEEEEeEEEcccC-eeEEEEcccCCCCC
Q 013402 292 GGVENVLAEHINLYNVG---------VGIHVKTNIG----R--G----GFIRNITVSDVYMENAR-KGIKIAGDVGDHPD 351 (443)
Q Consensus 292 ~~v~nI~i~n~~~~~~~---------~gi~i~s~~~----~--~----g~v~nI~~~ni~~~~~~-~~i~i~~~~~~~~~ 351 (443)
..++||.|+|+.+.+.+ .+|.-.+..- . . -.|++++|+|+++++.- ..++|..
T Consensus 426 r~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~p------- 498 (582)
T PF03718_consen 426 RNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYP------- 498 (582)
T ss_dssp --EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE---------
T ss_pred cccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEee-------
Confidence 46999999999998752 3554333211 1 1 24799999999999853 4566653
Q ss_pred CCCCCCCCCeEEeEEEEeEEEeccC------eeEEEE---ec---CCCCeeeEEEEeEEEEeeC
Q 013402 352 DKFNPNALPVVNGITIKDVWGTKVQ------QSGLIQ---GL---KNSPFTGICLSNINLQGVA 403 (443)
Q Consensus 352 ~~~~~~~~~~i~nIt~~nI~~~~~~------~~~~i~---g~---~~~~i~ni~~~nv~~~~~~ 403 (443)
+...+|+.++|+.+..=. ....+. +. ......+|.|+|.++.++.
T Consensus 499 -------lqn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~~ 555 (582)
T PF03718_consen 499 -------LQNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGEK 555 (582)
T ss_dssp -------SEEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTEE
T ss_pred -------cCCCcceEEEEeecccccCcccccceeeccccccccccccccccceEEEeEEECCEE
Confidence 124677777777775110 011111 11 1234789999999987653
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.72 E-value=3.4e-15 Score=145.15 Aligned_cols=188 Identities=16% Similarity=0.227 Sum_probs=97.3
Q ss_pred HHHHHHHhhhhccCCCeEEEECCCceEE-EEeEec-cccEEEEccC--cEEEecCCCCCCCCcCCCCCCCcccccCCCcc
Q 013402 58 FREAIYRIQHLRRSGGTLLYVPPGVYLT-GSFNLT-SHMTLYLAKG--AVIKATQDTWNWPLIAPLPSYGRGRERPGGRY 133 (443)
Q Consensus 58 iq~Ai~~~~~~~~~gg~~V~ip~G~Y~~-~~l~l~-s~~tl~~~~g--a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (443)
||+||++| ++|++|++|||+|.+ ++|.+. ++++|..+.. ++|.+...... .
T Consensus 1 iQ~Ai~~A-----~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~-------------------~- 55 (314)
T TIGR03805 1 LQEALIAA-----QPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGG-------------------A- 55 (314)
T ss_pred CHhHHhhC-----CCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCC-------------------C-
Confidence 69999987 579999999999987 478776 7888876533 33332211000 0
Q ss_pred eeeEEecCeeeeEEeccCcEEeCCCchhhhhhccCCCCCCCCeeEEEEeecceEEEeEEEe-------cCCCceEEeeee
Q 013402 134 MSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQ-------NSPFWNIHPVYC 206 (443)
Q Consensus 134 ~~~i~~~~~~nv~I~G~~G~idG~G~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~-------n~~~~~i~~~~~ 206 (443)
.. +. ..+++|+|.+. ++...+ ...|.+..|++++|+++++. ....++|.+..|
T Consensus 56 ~~-i~-v~a~~VtI~~l--tI~~~~----------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s 115 (314)
T TIGR03805 56 EG-LL-VTSDDVTLSDL--AVENTK----------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVES 115 (314)
T ss_pred ce-EE-EEeCCeEEEee--EEEcCC----------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEecc
Confidence 01 11 12344555554 222111 11344555555555555554 122345555555
Q ss_pred eeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEE
Q 013402 207 SNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAV 286 (443)
Q Consensus 207 ~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~i 286 (443)
++++|+++++.... .+||.+..|++++|+|+++.....||.+.. +.++.|+++++.....|+.+
T Consensus 116 ~~v~I~~n~i~g~~----d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~------------S~~~~v~~N~~~~N~~Gi~v 179 (314)
T TIGR03805 116 TNVLVEDSYVRGAS----DAGIYVGQSQNIVVRNNVAEENVAGIEIEN------------SQNADVYNNIATNNTGGILV 179 (314)
T ss_pred CCEEEECCEEECCC----cccEEECCCCCeEEECCEEccCcceEEEEe------------cCCcEEECCEEeccceeEEE
Confidence 55555555555421 235555555555555555555555555443 45555555555555455555
Q ss_pred ccccC---CcEEEEEEEeeEEeC
Q 013402 287 GSETS---GGVENVLAEHINLYN 306 (443)
Q Consensus 287 gs~~~---~~v~nI~i~n~~~~~ 306 (443)
-.... ...++++|+++++.+
T Consensus 180 ~~~p~~~~~~s~~~~v~~N~i~~ 202 (314)
T TIGR03805 180 FDLPGLPQPGGSNVRVFDNIIFD 202 (314)
T ss_pred eecCCCCcCCccceEEECCEEEC
Confidence 22111 123455555555544
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=2.3e-13 Score=138.30 Aligned_cols=152 Identities=21% Similarity=0.227 Sum_probs=129.9
Q ss_pred CCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCC----ceEEEccCccccccccCCCcccEEE
Q 013402 197 PFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGD----DLVAVKSGWDEYGIAYGHPSSGITI 272 (443)
Q Consensus 197 ~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gd----D~i~i~sg~~~~g~~~~~~~~ni~i 272 (443)
....+.+..|+||.+++++|.+++ ..++|+..|+|++++|.+|.+.+ ||+.+.+ ++|+.|
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~----~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s------------c~NvlI 300 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSP----LWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS------------CSNVLI 300 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCC----cEEEeeecccCceecceEEECCCCCCCCcccccc------------ceeEEE
Confidence 345788999999999999999976 47899999999999999998844 4777766 899999
Q ss_pred EEEEEeCCCceEEEccccCC-------cEEEEEEEeeEEeCCceeEEEEeecCCCceEEEEEEEeEEEcccCeeEEEEcc
Q 013402 273 RRVTGSSPFSGIAVGSETSG-------GVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGD 345 (443)
Q Consensus 273 ~n~~~~~~~~gi~igs~~~~-------~v~nI~i~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~ 345 (443)
++|+|...+++|++++.... ..+||+|+||.|.....++.+.++. +|.|+||++||+.|.+..++++|+..
T Consensus 301 ~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~--~ggv~ni~ved~~~~~~d~GLRikt~ 378 (542)
T COG5434 301 EGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM--GGGVQNITVEDCVMDNTDRGLRIKTN 378 (542)
T ss_pred eccEEecCCceEEeecccCCcccccccccccEEEecceecccccceEeeeec--CCceeEEEEEeeeeccCcceeeeeee
Confidence 99999999999999987432 3689999999999876677777875 68899999999999999999999975
Q ss_pred cCCCCCCCCCCCCCCeEEeEEEEeEEEeccC
Q 013402 346 VGDHPDDKFNPNALPVVNGITIKDVWGTKVQ 376 (443)
Q Consensus 346 ~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~ 376 (443)
... .+.++||+|+++++.+..
T Consensus 379 ~~~----------gG~v~nI~~~~~~~~nv~ 399 (542)
T COG5434 379 DGR----------GGGVRNIVFEDNKMRNVK 399 (542)
T ss_pred ccc----------ceeEEEEEEecccccCcc
Confidence 332 258999999999998763
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.31 E-value=1.4e-10 Score=112.84 Aligned_cols=163 Identities=23% Similarity=0.250 Sum_probs=127.6
Q ss_pred eeeEEeccCc----EEeCCCchhhhhhccCCCCCCCCeeEEEEeecceEEEeEEEecCCCceEEeeeeeeEEEEeEEEEC
Q 013402 143 QDVVITGENG----TIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILA 218 (443)
Q Consensus 143 ~nv~I~G~~G----~idG~G~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~ 218 (443)
++++|.|. | +|++.++. .....+ +..+++++|++++++++..++|.+..|++++|+++++..
T Consensus 32 ~~Iti~G~-g~~~tvid~~~~~------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~ 97 (314)
T TIGR03805 32 DGVTIRGA-GMDETILDFSGQV------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEW 97 (314)
T ss_pred CCeEEEec-CCCccEEecccCC------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEe
Confidence 67899987 4 47766542 112334 446899999999999999999999999999999999974
Q ss_pred CCC---CCCCCeecccCCccEEEEeeEEec-CCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcE
Q 013402 219 PAD---SPNTDGIDPDSSSNVCIEDSYIST-GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGV 294 (443)
Q Consensus 219 ~~~---~~n~DGi~~~~s~nv~I~n~~i~~-gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v 294 (443)
... ....+||.+..|++++|++|+++. .|+||.++. +++++|+||+++....||.+.. .
T Consensus 98 ~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~------------s~~~~v~nN~~~~n~~GI~i~~-----S 160 (314)
T TIGR03805 98 TGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ------------SQNIVVRNNVAEENVAGIEIEN-----S 160 (314)
T ss_pred ccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC------------CCCeEEECCEEccCcceEEEEe-----c
Confidence 321 124689999999999999999998 455898875 7999999999998888998863 3
Q ss_pred EEEEEEeeEEeCCceeEEEEeecCCC-ceEEEEEEEeEEEccc
Q 013402 295 ENVLAEHINLYNVGVGIHVKTNIGRG-GFIRNITVSDVYMENA 336 (443)
Q Consensus 295 ~nI~i~n~~~~~~~~gi~i~s~~~~~-g~v~nI~~~ni~~~~~ 336 (443)
.++.++++++.+...|+.+...++.. ..-+++++++..+.+.
T Consensus 161 ~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 161 QNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred CCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 47889999999888899887655321 2347888888887654
No 22
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.81 E-value=3.5e-08 Score=90.23 Aligned_cols=125 Identities=15% Similarity=0.150 Sum_probs=89.1
Q ss_pred EEeecceEEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCC-----CCee------cccCCccEEEEeeEEecCCc
Q 013402 180 FMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPN-----TDGI------DPDSSSNVCIEDSYISTGDD 248 (443)
Q Consensus 180 ~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n-----~DGi------~~~~s~nv~I~n~~i~~gdD 248 (443)
|+.|+++++++++|.+++. .+..|++++++|+.+.......+ -|++ .+++++||.|+|+.+.+.|
T Consensus 94 fR~~~~i~L~nv~~~~A~E---t~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD- 169 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADE---TLWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD- 169 (277)
T ss_pred hhcccCcEEEeeEeCCCcc---cCEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc-
Confidence 6678899999999977764 23457888888888855332222 2222 2456899999999998877
Q ss_pred eEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeCCceeEEEEeecCCCceEEEEEE
Q 013402 249 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITV 328 (443)
Q Consensus 249 ~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~~~~gi~i~s~~~~~g~v~nI~~ 328 (443)
+++. ++||+|.|+++.+. .+|- ..+|+++.||++.+.+ | -.+++|+++
T Consensus 170 --AFWn------------~eNVtVyDS~i~GE----YLgW----~SkNltliNC~I~g~Q-p---------LCY~~~L~l 217 (277)
T PF12541_consen 170 --AFWN------------CENVTVYDSVINGE----YLGW----NSKNLTLINCTIEGTQ-P---------LCYCDNLVL 217 (277)
T ss_pred --cccc------------CCceEEEcceEeee----EEEE----EcCCeEEEEeEEeccC-c---------cEeecceEE
Confidence 4554 89999999998653 1221 3569999999998763 2 367889999
Q ss_pred EeEEEcccCeeE
Q 013402 329 SDVYMENARKGI 340 (443)
Q Consensus 329 ~ni~~~~~~~~i 340 (443)
+|++|.++..++
T Consensus 218 ~nC~~~~tdlaF 229 (277)
T PF12541_consen 218 ENCTMIDTDLAF 229 (277)
T ss_pred eCcEeecceeee
Confidence 999999776654
No 23
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.80 E-value=1.5e-07 Score=93.28 Aligned_cols=142 Identities=18% Similarity=0.159 Sum_probs=108.3
Q ss_pred eEEEEeecceEEEeEEEecCC------CceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEec-CCce
Q 013402 177 LIEFMNSRSIIISNVIFQNSP------FWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIST-GDDL 249 (443)
Q Consensus 177 ~i~~~~~~nv~I~~v~i~n~~------~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gdD~ 249 (443)
++.-..+++|+|+|++|.+++ ...|.+..|++++|++++|.++. ..||.+..|+ ..|.++.|.. .+.+
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 566777999999999999876 34688899999999999999852 3789999998 7777777766 6666
Q ss_pred EEEccCccccccccCCCcccEEEEEEEEeCC-CceEEEccc-------------------------cCC------cEEEE
Q 013402 250 VAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGIAVGSE-------------------------TSG------GVENV 297 (443)
Q Consensus 250 i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~-~~gi~igs~-------------------------~~~------~v~nI 297 (443)
|.++. ++++.|+++++.+. ++||.|.-. ..+ ...++
T Consensus 183 I~lw~------------S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v 250 (455)
T TIGR03808 183 IVSFD------------ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNV 250 (455)
T ss_pred EEEec------------cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCe
Confidence 66554 89999999999887 667766421 111 25688
Q ss_pred EEEeeEEeCCc-eeEEEEeecCCCceEEEEEEEeEEEcccCe-eEEE
Q 013402 298 LAEHINLYNVG-VGIHVKTNIGRGGFIRNITVSDVYMENARK-GIKI 342 (443)
Q Consensus 298 ~i~n~~~~~~~-~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~-~i~i 342 (443)
+|+++++.+++ .|+++.+. +|+.|+++++++.++ +++.
T Consensus 251 ~V~gN~I~~~r~dgI~~nss-------s~~~i~~N~~~~~R~~alhy 290 (455)
T TIGR03808 251 IVRGNRIRNCDYSAVRGNSA-------SNIQITGNSVSDVREVALYS 290 (455)
T ss_pred EEECCEEeccccceEEEEcc-------cCcEEECcEeeeeeeeEEEE
Confidence 89999999988 89988764 566677777776666 6554
No 24
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.79 E-value=5.4e-08 Score=84.67 Aligned_cols=141 Identities=28% Similarity=0.282 Sum_probs=101.5
Q ss_pred eEEEEeecceEEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCc
Q 013402 177 LIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGW 256 (443)
Q Consensus 177 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~ 256 (443)
.|.+....+++|++++|.+...+++.+..+..++|++++|.. ...|+.+....++.+++|.+.....++.+..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~~-- 74 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVSG-- 74 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECCS--
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEEe--
Confidence 367778889999999999999999999999999999999998 3678999988999999999998765565553
Q ss_pred cccccccCCCcccEEEEEEEEeCCCc-eEEEccccCCcEEEEEEEeeEEeCCc-eeEEEEeecCCCceEEEEEEEeEEEc
Q 013402 257 DEYGIAYGHPSSGITIRRVTGSSPFS-GIAVGSETSGGVENVLAEHINLYNVG-VGIHVKTNIGRGGFIRNITVSDVYME 334 (443)
Q Consensus 257 ~~~g~~~~~~~~ni~i~n~~~~~~~~-gi~igs~~~~~v~nI~i~n~~~~~~~-~gi~i~s~~~~~g~v~nI~~~ni~~~ 334 (443)
..+++|++|.+..... ||.+.. ...+++|++|++.+.. .|+.+.... -.+++|+++++.
T Consensus 75 ----------~~~~~i~~~~i~~~~~~gi~~~~----~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~ 135 (158)
T PF13229_consen 75 ----------SSNITIENNRIENNGDYGIYISN----SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTIS 135 (158)
T ss_dssp -----------CS-EEES-EEECSSS-SCE-TC----EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEE
T ss_pred ----------cCCceecCcEEEcCCCccEEEec----cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEE
Confidence 7899999999998844 888863 2457899999999876 788776542 246778888888
Q ss_pred ccC-eeEEEE
Q 013402 335 NAR-KGIKIA 343 (443)
Q Consensus 335 ~~~-~~i~i~ 343 (443)
+.. .++.+.
T Consensus 136 ~~~~~gi~~~ 145 (158)
T PF13229_consen 136 NNGGNGIYLI 145 (158)
T ss_dssp CESSEEEE-T
T ss_pred eCcceeEEEE
Confidence 764 676553
No 25
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.70 E-value=1e-06 Score=81.77 Aligned_cols=174 Identities=22% Similarity=0.263 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHhhhhccCCCeEEEECCCceEEE-----EeEeccccEEEEccCcEEEecCCCCCCCCcCCCCCCCccccc
Q 013402 54 NTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTG-----SFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYGRGRER 128 (443)
Q Consensus 54 dt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~-----~l~l~s~~tl~~~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~ 128 (443)
--+.|++|++.| ++|.+|++.||+|... ||.|+++++|...+...
T Consensus 14 P~~Ti~~A~~~a-----~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~k------------------------- 63 (246)
T PF07602_consen 14 PFKTITKALQAA-----QPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNK------------------------- 63 (246)
T ss_pred CHHHHHHHHHhC-----CCCCEEEECCceeccccCCcccEEecCCeEEeecccCC-------------------------
Confidence 456799999987 5788999999999742 67888888886642110
Q ss_pred CCCcceeeEEecCeeeeEEeccC-c-EEeCCCchhhhhhccCCCCCCCCeeEEEEeecceEEEeEEEecCCCceEEeeee
Q 013402 129 PGGRYMSFIHGDGLQDVVITGEN-G-TIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYC 206 (443)
Q Consensus 129 ~~~~~~~~i~~~~~~nv~I~G~~-G-~idG~G~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~ 206 (443)
+...+.+.|.. + +|+|.+... ....+.+....+.+|+++++.|+..
T Consensus 64 ------------G~~~il~~g~~~~~~I~g~~~~~------------~~qn~tI~~~~~~~i~GvtItN~n~-------- 111 (246)
T PF07602_consen 64 ------------GQIDILITGGGTGPTISGGGPDL------------SGQNVTIILANNATISGVTITNPNI-------- 111 (246)
T ss_pred ------------CcceEEecCCceEEeEeccCccc------------cceeEEEEecCCCEEEEEEEEcCCC--------
Confidence 00112222210 0 223333110 0123445555666666666666510
Q ss_pred eeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEec-CCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEE
Q 013402 207 SNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIST-GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIA 285 (443)
Q Consensus 207 ~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~ 285 (443)
...-|+.+.++ +.+|+||+|.+ ..++|.+.... ......++.|+++.+.....||+
T Consensus 112 ----------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~------~~~~i~~~vI~GN~~~~~~~Gi~ 168 (246)
T PF07602_consen 112 ----------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTS------ANPGINGNVISGNSIYFNKTGIS 168 (246)
T ss_pred ----------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeee------cCCcccceEeecceEEecCcCeE
Confidence 12345666544 67777777766 45566553210 01236778888888887778888
Q ss_pred EccccCCcEEEEEEEeeEEeCCceeEEEE
Q 013402 286 VGSETSGGVENVLAEHINLYNVGVGIHVK 314 (443)
Q Consensus 286 igs~~~~~v~nI~i~n~~~~~~~~gi~i~ 314 (443)
+.....+ +. ..|+|+.+.+...||.+.
T Consensus 169 i~~~~~~-~~-n~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 169 ISDNAAP-VE-NKIENNIIENNNIGIVAI 195 (246)
T ss_pred EEcccCC-cc-ceeeccEEEeCCcCeEee
Confidence 8654433 33 355777777666677653
No 26
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.67 E-value=3.5e-06 Score=77.89 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=43.4
Q ss_pred cCCCCCceEEEeeccccCCCcchhHHHHHHHHHHhhhhccCCCeEEEECCCceE--EE-EeEeccccEEEEccCcEEEe
Q 013402 31 PMRYRNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYL--TG-SFNLTSHMTLYLAKGAVIKA 106 (443)
Q Consensus 31 ~~~~~~~~~nV~dyGa~gDg~tddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~--~~-~l~l~s~~tl~~~~ga~l~~ 106 (443)
.+....+++|+.||-. .|=-++|.+|+. .+.||++|+|--. +. ++.++.+.||+++ +.|.+
T Consensus 27 ra~~~~~~vni~dy~~-----~dwiasfkqaf~--------e~qtvvvpagl~cenint~ifip~gktl~v~--g~l~g 90 (464)
T PRK10123 27 RALPARQSVNINDYNP-----HDWIASFKQAFS--------EGQTVVVPAGLVCDNINTGIFIPPGKTLHIL--GSLRG 90 (464)
T ss_pred hhcCCCceeehhhcCc-----ccHHHHHHHHhc--------cCcEEEecCccEecccccceEeCCCCeEEEE--EEeec
Confidence 3344678899999953 345677888866 4569999999543 33 7888888888876 44543
No 27
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.54 E-value=7.2e-07 Score=81.78 Aligned_cols=101 Identities=25% Similarity=0.337 Sum_probs=77.1
Q ss_pred EEEEeecceEEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCcc
Q 013402 178 IEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWD 257 (443)
Q Consensus 178 i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~~ 257 (443)
-.+++|+|+.++++.+.. ...++.|+||+|+|.++.+ .|. ++.|+||+|.|+++... .+
T Consensus 131 Yf~m~s~ni~id~l~~~G----nY~Fq~~kNvei~ns~l~s------KDA--FWn~eNVtVyDS~i~GE----YL----- 189 (277)
T PF12541_consen 131 YFFMNSENIYIDNLVLDG----NYSFQYCKNVEIHNSKLDS------KDA--FWNCENVTVYDSVINGE----YL----- 189 (277)
T ss_pred EeeeeccceEEeceEEeC----CEEeeceeeEEEEccEEec------ccc--cccCCceEEEcceEeee----EE-----
Confidence 345667777777777654 2567899999999999997 344 57899999999999752 12
Q ss_pred ccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeCCceeEEE
Q 013402 258 EYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHV 313 (443)
Q Consensus 258 ~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~~~~gi~i 313 (443)
++.++|+++.||++.+. .++. .++|++++||+|.+++.++.-
T Consensus 190 ------gW~SkNltliNC~I~g~-QpLC-------Y~~~L~l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 190 ------GWNSKNLTLINCTIEGT-QPLC-------YCDNLVLENCTMIDTDLAFEY 231 (277)
T ss_pred ------EEEcCCeEEEEeEEecc-CccE-------eecceEEeCcEeecceeeeee
Confidence 22389999999999873 5554 367999999999988777655
No 28
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.53 E-value=1.8e-06 Score=86.67 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=99.7
Q ss_pred eEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCc----cEEEEeeEEec----CCceEEEccCccccccccCCCcccEE
Q 013402 200 NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSS----NVCIEDSYIST----GDDLVAVKSGWDEYGIAYGHPSSGIT 271 (443)
Q Consensus 200 ~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~----nv~I~n~~i~~----gdD~i~i~sg~~~~g~~~~~~~~ni~ 271 (443)
++....+++..+++++|..++ ...+++.... +..|+|..+.. ..||+.+ .+|-+
T Consensus 322 ~~~~~g~q~~~~~GiTI~~pP----~~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~l--------------y~nS~ 383 (582)
T PF03718_consen 322 HISANGGQTLTCEGITINDPP----FHSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIEL--------------YPNST 383 (582)
T ss_dssp ECS-SSSEEEEEES-EEE--S----S-SEEEESSSGGGEEEEEEEEEEE---CTT----B----------------TT-E
T ss_pred hhccCCcceEEEEeeEecCCC----cceEEecCCccccccceeeceeeeeeEEeccCCccc--------------cCCCe
Confidence 344567889999999999976 3456666443 46888888764 4567665 45778
Q ss_pred EEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeCCceeEEEEeecCCCceEEEEEEEeEEEcccC---------eeEEE
Q 013402 272 IRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENAR---------KGIKI 342 (443)
Q Consensus 272 i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~---------~~i~i 342 (443)
|+||+++..+++|++.- +++.++||+++....|--|.... .+..+++|+|+|+.+-..+ .+|.-
T Consensus 384 i~dcF~h~nDD~iKlYh------S~v~v~~~ViWk~~Ngpiiq~GW-~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ 456 (582)
T PF03718_consen 384 IRDCFIHVNDDAIKLYH------SNVSVSNTVIWKNENGPIIQWGW-TPRNISNVSVENIDIIHNRWIWHNNYVNTAILG 456 (582)
T ss_dssp EEEEEEEESS-SEE--S------TTEEEEEEEEEE-SSS-SEE--C-S---EEEEEEEEEEEEE---SSGGCTTT-ECEE
T ss_pred eeeeEEEecCchhheee------cCcceeeeEEEecCCCCeEEeec-cccccCceEEeeeEEEeeeeecccCCCCceeEe
Confidence 89999999999998762 47899999999876554343222 2466999999999886542 24443
Q ss_pred E-cccCCCCCCCCCCCCCCeEEeEEEEeEEEeccCeeEEEEecCCCCeeeEEEEeEEEEee
Q 013402 343 A-GDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGV 402 (443)
Q Consensus 343 ~-~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~~~~i~ni~~~nv~~~~~ 402 (443)
. ..|.+.... ...+..-+|++++|+|++.++.- +..+.=.+-...+|+.++|+.+..-
T Consensus 457 ss~~y~~~~s~-~~adp~~ti~~~~~~nv~~EG~~-~~l~ri~plqn~~nl~ikN~~~~~w 515 (582)
T PF03718_consen 457 SSPFYDDMAST-KTADPSTTIRNMTFSNVRCEGMC-PCLFRIYPLQNYDNLVIKNVHFESW 515 (582)
T ss_dssp E--BTTS-SSS---BEEEEEEEEEEEEEEEEECCE--ECEEE--SEEEEEEEEEEEEECEE
T ss_pred cccccccccCC-CCCCcccceeeEEEEeEEEeccc-ceeEEEeecCCCcceEEEEeecccc
Confidence 3 245221111 01111126999999999998753 2233323444567788888888743
No 29
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.52 E-value=2.8e-06 Score=79.70 Aligned_cols=134 Identities=29% Similarity=0.184 Sum_probs=83.8
Q ss_pred EEEEeecceEEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCcc
Q 013402 178 IEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWD 257 (443)
Q Consensus 178 i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~~ 257 (443)
|.+..+++..|++.++.+.. .++.+..+++++|++++|... ..||++..+++++|+++.+.....||.+..
T Consensus 16 i~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~--- 86 (236)
T PF05048_consen 16 IYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMG--- 86 (236)
T ss_pred EEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEc---
Confidence 56666667777666665543 455667777777777777652 467777777777777777776556666665
Q ss_pred ccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeCCceeEEEEeecCCCceEEEEEEEeEEEccc-
Q 013402 258 EYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENA- 336 (443)
Q Consensus 258 ~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~- 336 (443)
+.+.+|+++++.....||.+.. ..+.+|+++++.+...||.+... .+.++++.++.+.
T Consensus 87 ---------s~~~~I~~N~i~~n~~GI~l~~-----s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~n~ 145 (236)
T PF05048_consen 87 ---------SSNNTISNNTISNNGYGIYLYG-----SSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISNNT 145 (236)
T ss_pred ---------CCCcEEECCEecCCCceEEEee-----CCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeCCC
Confidence 3444777777766655666542 23456677777666666666432 4445555566555
Q ss_pred CeeEE
Q 013402 337 RKGIK 341 (443)
Q Consensus 337 ~~~i~ 341 (443)
..+|.
T Consensus 146 ~~Gi~ 150 (236)
T PF05048_consen 146 DYGIY 150 (236)
T ss_pred ccceE
Confidence 55665
No 30
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.51 E-value=2.3e-06 Score=74.26 Aligned_cols=151 Identities=30% Similarity=0.280 Sum_probs=99.1
Q ss_pred EecCeeeeEEeccCcEEeCCCchhhhhhccCCCCCCCCeeEEEEeecceEEEeEEEecCCCceEEeeeeeeEEEEeEEEE
Q 013402 138 HGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTIL 217 (443)
Q Consensus 138 ~~~~~~nv~I~G~~G~idG~G~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~ 217 (443)
...+..+++|.+- +|...+ ...|.+..+..++|++.+|.+ ...++.+....+++++++++.
T Consensus 4 ~i~~~~~~~i~~~--~i~~~~----------------~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~ 64 (158)
T PF13229_consen 4 SINNGSNVTIRNC--TISNNG----------------GDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTIS 64 (158)
T ss_dssp EETTCEC-EEESE--EEESSS----------------SECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEE
T ss_pred EEECCcCeEEeee--EEEeCC----------------CeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEE
Confidence 3455566777763 555432 346889999999999999999 777899999999999999999
Q ss_pred CCCCCCCCCeecccCCccEEEEeeEEec-CCceEEEccCccccccccCCCcccEEEEEEEEeCC-CceEEEccccCCcEE
Q 013402 218 APADSPNTDGIDPDSSSNVCIEDSYIST-GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGIAVGSETSGGVE 295 (443)
Q Consensus 218 ~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~-~~gi~igs~~~~~v~ 295 (443)
... .|+.+..+.+++|++|.+.. ++.||.+.. +..+++|++|++... ..|+.+.... -.
T Consensus 65 ~~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~-----------~~~~~~i~~n~~~~~~~~gi~~~~~~---~~ 125 (158)
T PF13229_consen 65 DNG-----SGIYVSGSSNITIENNRIENNGDYGIYISN-----------SSSNVTIENNTIHNNGGSGIYLEGGS---SP 125 (158)
T ss_dssp S-S-----EEEECCS-CS-EEES-EEECSSS-SCE-TC-----------EECS-EEES-EEECCTTSSCEEEECC-----
T ss_pred Ecc-----ceEEEEecCCceecCcEEEcCCCccEEEec-----------cCCCEEEEeEEEEeCcceeEEEECCC---CC
Confidence 742 68999899999999999998 444787763 157899999999987 4888886543 34
Q ss_pred EEEEEeeEEeCCc-eeEEEEeecCCCceEEEEEEEeEE
Q 013402 296 NVLAEHINLYNVG-VGIHVKTNIGRGGFIRNITVSDVY 332 (443)
Q Consensus 296 nI~i~n~~~~~~~-~gi~i~s~~~~~g~v~nI~~~ni~ 332 (443)
+++|++|++.+.. .|+.+.... .++++.+++
T Consensus 126 ~~~i~~n~i~~~~~~gi~~~~~~------~~~~v~~n~ 157 (158)
T PF13229_consen 126 NVTIENNTISNNGGNGIYLISGS------SNCTVTNNT 157 (158)
T ss_dssp S-EEECEEEECESSEEEE-TT-S------S--EEES-E
T ss_pred eEEEEEEEEEeCcceeEEEECCC------CeEEEECCC
Confidence 7889999999865 677664431 155666654
No 31
>PLN02480 Probable pectinesterase
Probab=98.49 E-value=3.8e-05 Score=75.04 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHhhhhccCCC---eEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRRSGG---TLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg---~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
.|-..||+||+++. .+. -+|+|.||+|. +.+.+ |.+++|.++
T Consensus 58 g~f~TIQ~AIdaap----~~~~~~~~I~Ik~GvY~-E~V~I~~~kp~ItL~G~ 105 (343)
T PLN02480 58 GDFTSVQSAIDAVP----VGNSEWIIVHLRKGVYR-EKVHIPENKPFIFMRGN 105 (343)
T ss_pred CCcccHHHHHhhCc----cCCCceEEEEEcCcEEE-EEEEECCCCceEEEEec
Confidence 46889999999984 322 25889999997 55656 344666544
No 32
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.41 E-value=1.2e-05 Score=75.02 Aligned_cols=119 Identities=25% Similarity=0.206 Sum_probs=89.1
Q ss_pred EEEEeecceEEEeEEEec-CCCceEEeeeeeeEEEEeEEEECCCCC-CCCCeecc-cCCccEEEEeeEEec---------
Q 013402 178 IEFMNSRSIIISNVIFQN-SPFWNIHPVYCSNVVIRYVTILAPADS-PNTDGIDP-DSSSNVCIEDSYIST--------- 245 (443)
Q Consensus 178 i~~~~~~nv~I~~v~i~n-~~~~~i~~~~~~~v~i~~~~I~~~~~~-~n~DGi~~-~~s~nv~I~n~~i~~--------- 245 (443)
+.+.-|.|.+|.|+--.. --.|++.+.+.+||.|+|++|+..... ++-|+|.+ ..++||.|++|++..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h 174 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSH 174 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccC
Confidence 677778888887765221 235788888899999999999875422 23588988 678999999999986
Q ss_pred CCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccC----CcEEEEEEEeeEEeCC
Q 013402 246 GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETS----GGVENVLAEHINLYNV 307 (443)
Q Consensus 246 gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~----~~v~nI~i~n~~~~~~ 307 (443)
+|..+.++-+ +..|+|++|+|...+-++-+|+... ++-.+|++.+|.+.+.
T Consensus 175 ~DGl~Dik~~-----------AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 175 GDGLVDIKKD-----------ANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred CCccEEeccC-----------CcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 3444566654 7899999999988777888887542 3456799999998875
No 33
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.40 E-value=3.7e-05 Score=72.89 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=110.2
Q ss_pred CCCeEEEECCCceEEEEeEeccccEEEEccCcEEEecCCCCCCCCcCCCCCCCcccccCCCcceeeEEecCeeeeEEecc
Q 013402 71 SGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGE 150 (443)
Q Consensus 71 ~gg~~V~ip~G~Y~~~~l~l~s~~tl~~~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~ 150 (443)
.+|+.+-+. |+|. +++.+....+|..+.++++.+..... .+. ....++.++|.
T Consensus 32 ~pgd~~~i~-g~~~-g~~vInr~l~l~ge~ga~l~g~g~G~------------------------~vt-v~aP~~~v~Gl 84 (408)
T COG3420 32 KPGDYYGIS-GRYA-GNFVINRALTLRGENGAVLDGGGKGS------------------------YVT-VAAPDVIVEGL 84 (408)
T ss_pred CCCcEEEEe-eeec-ccEEEccceeeccccccEEecCCccc------------------------EEE-EeCCCceeeeE
Confidence 678888888 8884 77777778888899898887643321 122 12456667764
Q ss_pred CcEEeCCCchhhhhhccCCCCCCCCeeEEEEeecceEEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCC---CCCCCe
Q 013402 151 NGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPAD---SPNTDG 227 (443)
Q Consensus 151 ~G~idG~G~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~---~~n~DG 227 (443)
+..+.|.....+ ....+.-...+.-.|+...+... .++|.+..+.++.|++.+|....+ ....+|
T Consensus 85 --~vr~sg~~lp~m---------~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnG 152 (408)
T COG3420 85 --TVRGSGRSLPAM---------DAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNG 152 (408)
T ss_pred --EEecCCCCcccc---------cceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCc
Confidence 555555432211 11233444455666666666554 468899999999999999997543 235789
Q ss_pred ecccCCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCC
Q 013402 228 IDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP 280 (443)
Q Consensus 228 i~~~~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~ 280 (443)
|+++++++..|....+.-+.|||..+. +++..|+++.|...
T Consensus 153 I~vyNa~~a~V~~ndisy~rDgIy~~~------------S~~~~~~gnr~~~~ 193 (408)
T COG3420 153 IYVYNAPGALVVGNDISYGRDGIYSDT------------SQHNVFKGNRFRDL 193 (408)
T ss_pred eEEEcCCCcEEEcCccccccceEEEcc------------cccceecccchhhe
Confidence 999999999999999999999998876 56666666666543
No 34
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.35 E-value=1.6e-05 Score=74.50 Aligned_cols=114 Identities=31% Similarity=0.163 Sum_probs=99.6
Q ss_pred eEEEEeecceEEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCc
Q 013402 177 LIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGW 256 (443)
Q Consensus 177 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~ 256 (443)
.+.+..+.+++|++.++.+. ..++++..|++++|++..+... ..||.+..+.+.+|+++.|.....||.+..
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n-----~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-- 108 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNN-----GYGIYLMGSSNNTISNNTISNNGYGIYLYG-- 108 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEcc-----CCCEEEEcCCCcEEECCEecCCCceEEEee--
Confidence 46889999999999999988 7899999999999999999984 489999988888999999999777998876
Q ss_pred cccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeCC-ceeEEE
Q 013402 257 DEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNV-GVGIHV 313 (443)
Q Consensus 257 ~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~~-~~gi~i 313 (443)
+.+.+|+++++.....||.+... .+.+|+++++.+. ..|+.+
T Consensus 109 ----------s~~~~I~~N~i~~~~~GI~l~~s-----~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 109 ----------SSNNTISNNTISNNGYGIYLSSS-----SNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred ----------CCceEEECcEEeCCCEEEEEEeC-----CCCEEECeEEeCCCccceEE
Confidence 67899999999877899998743 5778999999988 788884
No 35
>smart00656 Amb_all Amb_all domain.
Probab=98.31 E-value=3.2e-05 Score=69.87 Aligned_cols=122 Identities=28% Similarity=0.298 Sum_probs=82.9
Q ss_pred eEEeeeeeeEEEEeEEEECCCC--CCCCCeecccCCccEEEEeeEEecC---------Cce-EEEccCccccccccCCCc
Q 013402 200 NIHPVYCSNVVIRYVTILAPAD--SPNTDGIDPDSSSNVCIEDSYISTG---------DDL-VAVKSGWDEYGIAYGHPS 267 (443)
Q Consensus 200 ~i~~~~~~~v~i~~~~I~~~~~--~~n~DGi~~~~s~nv~I~n~~i~~g---------dD~-i~i~sg~~~~g~~~~~~~ 267 (443)
++.+..++||.|+|++|+.... ....|+|.+..+++|.|++|++..+ +|+ +.++.+ +
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~-----------s 101 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNG-----------S 101 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcc-----------c
Confidence 3445556777788888776432 2357999999999999999999886 343 455543 7
Q ss_pred ccEEEEEEEEeCCCceEEEccccC---CcEEEEEEEeeEEeCCc-eeEEEEeecCCCceEEEEEEEeEEEcccC-eeE
Q 013402 268 SGITIRRVTGSSPFSGIAVGSETS---GGVENVLAEHINLYNVG-VGIHVKTNIGRGGFIRNITVSDVYMENAR-KGI 340 (443)
Q Consensus 268 ~ni~i~n~~~~~~~~gi~igs~~~---~~v~nI~i~n~~~~~~~-~gi~i~s~~~~~g~v~nI~~~ni~~~~~~-~~i 340 (443)
.+++|++|+|..-..+.-+|+... ....+|++.++.+.+.. +.-+++ .| .+++-|..+.+.. +++
T Consensus 102 ~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r-----~g---~~hv~NN~~~n~~~~~~ 171 (190)
T smart00656 102 TYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR-----FG---YVHVYNNYYTGWTSYAI 171 (190)
T ss_pred ccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc-----CC---EEEEEeeEEeCcccEeE
Confidence 999999999987677888887432 22457999999887642 222221 12 4566676666653 443
No 36
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.26 E-value=0.00011 Score=73.04 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhhhhccCCCeEEEECCCceE
Q 013402 54 NTKAFREAIYRIQHLRRSGGTLLYVPPGVYL 84 (443)
Q Consensus 54 dt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~ 84 (443)
+.++||+||++| .+|.+|+++.|+|.
T Consensus 3 s~~~lq~Ai~~a-----~pGD~I~L~~Gty~ 28 (425)
T PF14592_consen 3 SVAELQSAIDNA-----KPGDTIVLADGTYK 28 (425)
T ss_dssp SHHHHHHHHHH-------TT-EEEE-SEEEE
T ss_pred CHHHHHHHHHhC-----CCCCEEEECCceee
Confidence 468999999987 68999999999997
No 37
>smart00656 Amb_all Amb_all domain.
Probab=98.14 E-value=0.00017 Score=65.13 Aligned_cols=142 Identities=18% Similarity=0.116 Sum_probs=93.6
Q ss_pred eEEEEeecceEEEeEEEecCCC------ceEEeeeeeeEEEEeEEEECCCC----CCCCCee-ccc-CCccEEEEeeEEe
Q 013402 177 LIEFMNSRSIIISNVIFQNSPF------WNIHPVYCSNVVIRYVTILAPAD----SPNTDGI-DPD-SSSNVCIEDSYIS 244 (443)
Q Consensus 177 ~i~~~~~~nv~I~~v~i~n~~~------~~i~~~~~~~v~i~~~~I~~~~~----~~n~DGi-~~~-~s~nv~I~n~~i~ 244 (443)
.|.+..++||.|++++|++... .+|.+..+++|.|++|++..... ....||. ++. .+.+++|.+|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 3778789999999999998643 67899999999999999997410 1113553 433 4789999999998
Q ss_pred cCCceEEEccCccccccccCCCcccEEEEEEEEeCC-CceEEEccccCCcEEEEEEEeeEEeCCc-eeEEEEeecCCCce
Q 013402 245 TGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGIAVGSETSGGVENVLAEHINLYNVG-VGIHVKTNIGRGGF 322 (443)
Q Consensus 245 ~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~-~~gi~igs~~~~~v~nI~i~n~~~~~~~-~gi~i~s~~~~~g~ 322 (443)
..+=+..+.++..... ....+|++.+|++.+. .+.-.+.. + .+.+.|+.+.+.. .|+.+.. +
T Consensus 113 ~h~~~~liG~~d~~~~----~~~~~vT~h~N~~~~~~~R~P~~r~----g--~~hv~NN~~~n~~~~~~~~~~--~---- 176 (190)
T smart00656 113 NHWKVMLLGHSDSDTD----DGKMRVTIAHNYFGNLRQRAPRVRF----G--YVHVYNNYYTGWTSYAIGGRM--G---- 176 (190)
T ss_pred cCCEEEEEccCCCccc----cccceEEEECcEEcCcccCCCcccC----C--EEEEEeeEEeCcccEeEecCC--C----
Confidence 7655566655311100 0024799999999664 34334431 2 5788898888764 4444332 1
Q ss_pred EEEEEEEeEEEcc
Q 013402 323 IRNITVSDVYMEN 335 (443)
Q Consensus 323 v~nI~~~ni~~~~ 335 (443)
..|.+|+..+++
T Consensus 177 -~~v~~E~N~F~~ 188 (190)
T smart00656 177 -ATILSEGNYFEA 188 (190)
T ss_pred -cEEEEECeEEEC
Confidence 255666666554
No 38
>PLN02497 probable pectinesterase
Probab=98.09 E-value=0.00068 Score=65.92 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCceEEE-Ee-EeccccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTG-SF-NLTSHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~-~l-~l~s~~tl~~~ 99 (443)
-|-..||+|||++.... ...-+|+|.||+|.-. .| .-|.+++|.++
T Consensus 42 Gdf~TIq~AIdavP~~~-~~~~~I~Ik~G~Y~EkV~Ip~~k~~itl~G~ 89 (331)
T PLN02497 42 GNFTTIQSAIDSVPSNN-KHWFCINVKAGLYREKVKIPYDKPFIVLVGA 89 (331)
T ss_pred CCccCHHHHHhhccccC-CceEEEEEeCcEEEEEEEecCCCCcEEEEec
Confidence 34789999999985110 1223699999999743 22 23456666554
No 39
>PLN02176 putative pectinesterase
Probab=98.07 E-value=0.0025 Score=62.29 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 54 NTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 54 dt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
|-..||+||+++... ....-+|+|+||+|.- .+.+ |.+++|.++
T Consensus 50 df~TIq~AIdavP~~-~~~~~~I~Ik~GvY~E-kV~Ip~~k~~vtl~G~ 96 (340)
T PLN02176 50 YFKTVQSAIDSIPLQ-NQNWIRILIQNGIYRE-KVTIPKEKGYIYMQGK 96 (340)
T ss_pred CccCHHHHHhhchhc-CCceEEEEECCcEEEE-EEEECCCCccEEEEEc
Confidence 478999999998511 0122478999999973 3333 456777654
No 40
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=0.00037 Score=65.38 Aligned_cols=169 Identities=20% Similarity=0.206 Sum_probs=109.8
Q ss_pred EEecCeeeeEEecc--CcEEeCCCchhhhhhccCCCCCCCCeeEEEEeecceEEEeEEEecCC-----CceEEe-eeeee
Q 013402 137 IHGDGLQDVVITGE--NGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSP-----FWNIHP-VYCSN 208 (443)
Q Consensus 137 i~~~~~~nv~I~G~--~G~idG~G~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~-----~~~i~~-~~~~~ 208 (443)
+....+.|++|.|. +.++.|-| |.+..+.||.|++++|+..+ ...|.+ ....|
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~g-------------------l~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~n 155 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGG-------------------LKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHN 155 (345)
T ss_pred EEEeeccccEEEeeccccEEEece-------------------EEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeE
Confidence 44566788999987 13454433 77888999999999999876 456888 78899
Q ss_pred EEEEeEEEECCCCC---CCCCee-ccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCC---
Q 013402 209 VVIRYVTILAPADS---PNTDGI-DPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP--- 280 (443)
Q Consensus 209 v~i~~~~I~~~~~~---~n~DGi-~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~--- 280 (443)
+.|+++++...... ...||. ++. .+.+|+|.+|.|...+-+.-+.+-..+. ....-.+|++.+|+|.+.
T Consensus 156 IWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~---~~~~~~kvT~hhNyFkn~~qR 232 (345)
T COG3866 156 IWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSN---YDDGKYKVTIHHNYFKNLYQR 232 (345)
T ss_pred EEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCccc---ccCCceeEEEecccccccccc
Confidence 99999999984321 123443 343 4678999999999877666665421111 112357799999999765
Q ss_pred CceEEEccccCCcEEEEEEEeeEEeCCc-eeEEEEeecCCCceEEEEEEEeEEEcccCeeE
Q 013402 281 FSGIAVGSETSGGVENVLAEHINLYNVG-VGIHVKTNIGRGGFIRNITVSDVYMENARKGI 340 (443)
Q Consensus 281 ~~gi~igs~~~~~v~nI~i~n~~~~~~~-~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i 340 (443)
.--+++| -+++.|+...+.. .|+.+.. |.-.-|..|+..+++.+.++
T Consensus 233 ~PriRfG--------~vHvyNNYy~~~~~~g~a~~i-----G~~AkiyvE~NyF~~~~~~~ 280 (345)
T COG3866 233 GPRIRFG--------MVHVYNNYYEGNPKFGVAITI-----GTSAKIYVENNYFENGSEGL 280 (345)
T ss_pred CCceEee--------EEEEeccccccCcccceEEee-----ccceEEEEecceeccCCCCc
Confidence 2234444 4677777776433 3433322 11234566677776655543
No 41
>PLN02773 pectinesterase
Probab=98.00 E-value=0.0024 Score=61.86 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=57.2
Q ss_pred EEEeecceEEEeEEEecCCCc----eEEe-eeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEc
Q 013402 179 EFMNSRSIIISNVIFQNSPFW----NIHP-VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVK 253 (443)
Q Consensus 179 ~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~ 253 (443)
.+..++++..++++|+|...- .+.+ ...+.+.+.+|++... .|-+-.. ..+-.++||.|...=|-| ++
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~-----QDTL~~~-~gr~yf~~c~IeG~VDFI-FG 169 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGW-----QDTLYLH-YGKQYLRDCYIEGSVDFI-FG 169 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecc-----cceeEeC-CCCEEEEeeEEeecccEE-ee
Confidence 344577888999999887321 1222 2456677777777653 2333322 234666777776543422 22
Q ss_pred cCccccccccCCCcccEEEEEEEEeCCCceEEE-ccc-cCCcEEEEEEEeeEEeCC
Q 013402 254 SGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAV-GSE-TSGGVENVLAEHINLYNV 307 (443)
Q Consensus 254 sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~i-gs~-~~~~v~nI~i~n~~~~~~ 307 (443)
.-...+++|++.....|.-. -+- ....-....|.||++.+.
T Consensus 170 -------------~g~a~Fe~c~i~s~~~g~ITA~~r~~~~~~~GfvF~~c~it~~ 212 (317)
T PLN02773 170 -------------NSTALLEHCHIHCKSAGFITAQSRKSSQESTGYVFLRCVITGN 212 (317)
T ss_pred -------------ccEEEEEeeEEEEccCcEEECCCCCCCCCCceEEEEccEEecC
Confidence 23467777776554333211 111 111223566777777653
No 42
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.97 E-value=0.00048 Score=63.55 Aligned_cols=123 Identities=24% Similarity=0.303 Sum_probs=78.1
Q ss_pred EEEeEEEecCCC------ceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccc
Q 013402 187 IISNVIFQNSPF------WNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYG 260 (443)
Q Consensus 187 ~I~~v~i~n~~~------~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~~~~g 260 (443)
.|+++++..... -++.+..++++.|++|++.+. +.+|+.+..+....+.+..... ++.+..+
T Consensus 95 ~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~----- 162 (225)
T PF12708_consen 95 QIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHVS---GIFIDNG----- 162 (225)
T ss_dssp EEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE---EEEEESC-----
T ss_pred EEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccce---eeeeccc-----
Confidence 366666654331 346667778888888888764 2566666544444443333221 1333222
Q ss_pred cccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeC-CceeEEEEeecCCCceEEEEEEEeEEEcccCee
Q 013402 261 IAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYN-VGVGIHVKTNIGRGGFIRNITVSDVYMENARKG 339 (443)
Q Consensus 261 ~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~-~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~ 339 (443)
..++.+.+|.+.+...|+..++ ++++++||.+.+ ...|+.+... .+++++|++++++..+
T Consensus 163 ------~~~~~~~~~~~~~~~~g~~~~~------~~~~i~n~~~~~~~~~gi~i~~~-------~~~~i~n~~i~~~~~g 223 (225)
T PF12708_consen 163 ------SNNVIVNNCIFNGGDNGIILGN------NNITISNNTFEGNCGNGINIEGG-------SNIIISNNTIENCDDG 223 (225)
T ss_dssp ------EEEEEEECEEEESSSCSEECEE------EEEEEECEEEESSSSESEEEEEC-------SEEEEEEEEEESSSEE
T ss_pred ------eeEEEECCccccCCCceeEeec------ceEEEEeEEECCccceeEEEECC-------eEEEEEeEEEECCccC
Confidence 4667778888888777744332 689999999988 6688888664 3378888888888777
Q ss_pred E
Q 013402 340 I 340 (443)
Q Consensus 340 i 340 (443)
|
T Consensus 224 ~ 224 (225)
T PF12708_consen 224 I 224 (225)
T ss_dssp E
T ss_pred c
Confidence 5
No 43
>PLN02634 probable pectinesterase
Probab=97.94 E-value=0.0032 Score=61.78 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
-|-..||+|||++... ....-+|+|.||+|.-. +.+ |.+++|.++
T Consensus 66 Gdf~TIQaAIda~P~~-~~~r~vI~Ik~GvY~Ek-V~Ip~~k~~ItL~G~ 113 (359)
T PLN02634 66 GDFRSVQDAVDSVPKN-NTMSVTIKINAGFYREK-VVVPATKPYITFQGA 113 (359)
T ss_pred CCccCHHHHHhhCccc-CCccEEEEEeCceEEEE-EEEcCCCCeEEEEec
Confidence 3578999999998511 11234799999999743 333 456777665
No 44
>PLN02682 pectinesterase family protein
Probab=97.91 E-value=0.0058 Score=60.32 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
-|-..||+|||++... ....-+|+|.||+|.-. +.+ |.+++|.++
T Consensus 80 Gdf~TIQ~AIdavP~~-~~~r~vI~Ik~G~Y~Ek-V~Ip~~k~~Itl~G~ 127 (369)
T PLN02682 80 GDFTTIQAAIDSLPVI-NLVRVVIKVNAGTYREK-VNIPPLKAYITLEGA 127 (369)
T ss_pred CCccCHHHHHhhcccc-CCceEEEEEeCceeeEE-EEEeccCceEEEEec
Confidence 4578999999998511 11235889999999743 333 567788765
No 45
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.91 E-value=0.00011 Score=66.87 Aligned_cols=96 Identities=32% Similarity=0.396 Sum_probs=63.6
Q ss_pred eEEee-eeeeEEEEeEEEECC-----------CCCCCCCeecccCCccEEEEeeEEecC--------Cc-eEEEccCccc
Q 013402 200 NIHPV-YCSNVVIRYVTILAP-----------ADSPNTDGIDPDSSSNVCIEDSYISTG--------DD-LVAVKSGWDE 258 (443)
Q Consensus 200 ~i~~~-~~~~v~i~~~~I~~~-----------~~~~n~DGi~~~~s~nv~I~n~~i~~g--------dD-~i~i~sg~~~ 258 (443)
++.+. .++||.|+|++|+.. ......|+|.+..+++|.|++|++..+ .| .+.++.+
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~--- 114 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKG--- 114 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESS---
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeC---
Confidence 45554 677777777777761 113457889998999999999999876 44 4666654
Q ss_pred cccccCCCcccEEEEEEEEeCCCceEEEccc----cCCcEEEEEEEeeEEeCC
Q 013402 259 YGIAYGHPSSGITIRRVTGSSPFSGIAVGSE----TSGGVENVLAEHINLYNV 307 (443)
Q Consensus 259 ~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~----~~~~v~nI~i~n~~~~~~ 307 (443)
+.+|+|++|.|.+...+.-+|+. .... .+|++.++.+.++
T Consensus 115 --------s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 115 --------SDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp --------TEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred --------CceEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 89999999999876555566764 1223 7888888888654
No 46
>PLN02665 pectinesterase family protein
Probab=97.89 E-value=0.0057 Score=60.39 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 54 NTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 54 dt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
|-..||+||+++... ....-+|+|.||+|.- .+.+ |.+++|.++
T Consensus 79 df~TIq~AIdaiP~~-~~~r~vI~Ik~GvY~E-kV~Ip~~kp~Itl~G~ 125 (366)
T PLN02665 79 DFKTITDAIKSIPAG-NTQRVIIDIGPGEYNE-KITIDRSKPFVTLYGS 125 (366)
T ss_pred CccCHHHHHhhCccc-CCceEEEEEeCcEEEE-EEEecCCCCEEEEEec
Confidence 478899999998511 1123478899999973 3333 345666554
No 47
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.80 E-value=0.0041 Score=62.21 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=33.1
Q ss_pred cCCCcchhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 47 VGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 47 ~gDg~tddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
.+||.- |-..||+|||++........-+|+|.||+|.-. +.+ |.+++|.++
T Consensus 87 a~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~Ek-V~Ip~~kp~ItL~G~ 140 (422)
T PRK10531 87 AGTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPGTYQGT-VYVPAAAPPITLYGT 140 (422)
T ss_pred CCCCCC-CccCHHHHHhhccccCCCceEEEEEeCceeEEE-EEeCCCCceEEEEec
Confidence 345532 477899999986310011235789999999844 444 578899874
No 48
>PLN02432 putative pectinesterase
Probab=97.68 E-value=0.014 Score=56.05 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 54 NTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 54 dt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
|-..||+||+++... ....-+|+|.||+|.- .+.+ +.+++|.++
T Consensus 22 ~f~TIq~Aida~p~~-~~~~~~I~I~~G~Y~E-~V~ip~~k~~itl~G~ 68 (293)
T PLN02432 22 DFRKIQDAIDAVPSN-NSQLVFIWVKPGIYRE-KVVVPADKPFITLSGT 68 (293)
T ss_pred CccCHHHHHhhcccc-CCceEEEEEeCceeEE-EEEEeccCceEEEEEc
Confidence 478999999998511 1123478999999963 3333 345555543
No 49
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.64 E-value=0.001 Score=60.69 Aligned_cols=127 Identities=24% Similarity=0.208 Sum_probs=76.5
Q ss_pred EEE-EeecceEEEeEEEec---------------CCCceEEeeeeeeEEEEeEEEECCCC---CCCCCe-eccc-CCccE
Q 013402 178 IEF-MNSRSIIISNVIFQN---------------SPFWNIHPVYCSNVVIRYVTILAPAD---SPNTDG-IDPD-SSSNV 236 (443)
Q Consensus 178 i~~-~~~~nv~I~~v~i~n---------------~~~~~i~~~~~~~v~i~~~~I~~~~~---~~n~DG-i~~~-~s~nv 236 (443)
+.+ .+++||.|++++|++ .....+.+..+++|.|++|++..... ....|| +++. .+++|
T Consensus 39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v 118 (200)
T PF00544_consen 39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV 118 (200)
T ss_dssp EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence 444 489999999999998 24567899999999999999998621 111455 5654 57899
Q ss_pred EEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCC-CceEEEccccCCcEEEEEEEeeEEeC-CceeEEEE
Q 013402 237 CIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGIAVGSETSGGVENVLAEHINLYN-VGVGIHVK 314 (443)
Q Consensus 237 ~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~-~~gi~igs~~~~~v~nI~i~n~~~~~-~~~gi~i~ 314 (443)
+|++|.|...+.+..+++. +.. . ... ..++++.+|.|.+. .+.-.+.. + .+.+-|+.+.+ ...++...
T Consensus 119 TiS~n~f~~~~k~~l~G~~-d~~-~-~~~-~~~vT~hhN~f~~~~~R~P~~r~----G--~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 119 TISNNIFDNHNKTMLIGSS-DSN-S-TDR-GLRVTFHHNYFANTNSRNPRVRF----G--YVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp EEES-EEEEEEETCEESSC-TTC-G-GGT-TEEEEEES-EEEEEEE-TTEECS----C--EEEEES-EEEEECSESEEEE
T ss_pred EEEchhccccccccccCCC-CCc-c-ccC-CceEEEEeEEECchhhCCCcccc----c--EEEEEEeeeECCCCEEEEcc
Confidence 9999999885544444442 111 1 112 37899999988653 22212221 1 47777876654 33555554
No 50
>PLN02304 probable pectinesterase
Probab=97.58 E-value=0.021 Score=56.57 Aligned_cols=45 Identities=11% Similarity=0.307 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
-|-..||+|||++... ....-+|+|.||+|. ..+.+ |.+++|.++
T Consensus 85 Gdf~TIQ~AIdavP~~-~~~r~vI~Ik~GvY~-EkV~Ip~~K~~Itl~G~ 132 (379)
T PLN02304 85 CNFTTVQSAVDAVGNF-SQKRNVIWINSGIYY-EKVTVPKTKPNITFQGQ 132 (379)
T ss_pred CCccCHHHHHhhCccc-CCCcEEEEEeCeEeE-EEEEECCCCCcEEEEec
Confidence 3477999999998511 112357899999997 34444 567777665
No 51
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.41 E-value=0.03 Score=57.86 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
-|...||+||+++........-+|+|.||+|.- .+.+ |.+++|.++
T Consensus 235 G~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~E-~V~I~~~k~nItl~G~ 283 (529)
T PLN02170 235 GTHKTIGEALLSTSLESGGGRTVIYLKAGTYHE-NLNIPTKQKNVMLVGD 283 (529)
T ss_pred CchhhHHHHHHhcccccCCceEEEEEeCCeeEE-EEecCCCCceEEEEEc
Confidence 357899999997631001123589999999973 3333 346666554
No 52
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.31 E-value=0.016 Score=60.58 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
-+-..||+||+++......+.-+|+|.+|+|.-. +.+ |.+++|.++
T Consensus 251 g~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~E~-V~i~~~k~~v~l~G~ 299 (553)
T PLN02708 251 CCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYEET-VRVPLEKKNVVFLGD 299 (553)
T ss_pred CCccCHHHHHHhhhhccCCccEEEEEeCceEEee-eeecCCCccEEEEec
Confidence 3578999999998611001235899999999733 332 334555443
No 53
>PLN02671 pectinesterase
Probab=97.31 E-value=0.054 Score=53.36 Aligned_cols=45 Identities=13% Similarity=0.249 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
-|-..||+|||++... ....-+|+|.||+|.- .+.+ |.+++|.++
T Consensus 69 Gdf~TIQ~AIdavP~~-~~~~~~I~Ik~GvY~E-kV~I~~~k~~Itl~G~ 116 (359)
T PLN02671 69 GDSLTVQGAVDMVPDY-NSQRVKIYILPGIYRE-KVLVPKSKPYISFIGN 116 (359)
T ss_pred CCccCHHHHHHhchhc-CCccEEEEEeCceEEE-EEEECCCCCeEEEEec
Confidence 3578999999998521 1123589999999974 3344 456777665
No 54
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.30 E-value=0.0042 Score=60.10 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEec---cccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLT---SHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l~---s~~tl~~~ 99 (443)
-|-..||+|||++... ....-+|+|.||+|.- .+.++ .+++|.++
T Consensus 10 gdf~TIq~Aida~p~~-~~~~~~I~I~~G~Y~E-~V~i~~~k~~v~l~G~ 57 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDN-NTSRYTIFIKPGTYRE-KVTIPRSKPNVTLIGE 57 (298)
T ss_dssp SSBSSHHHHHHHS-SS-SSS-EEEEE-SEEEE---EEE-STSTTEEEEES
T ss_pred CCccCHHHHHHhchhc-CCceEEEEEeCeeEcc-ccEeccccceEEEEec
Confidence 4567899999998511 0123489999999973 33333 35555543
No 55
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.019 Score=54.93 Aligned_cols=122 Identities=19% Similarity=0.089 Sum_probs=82.3
Q ss_pred EEecCeeeeEEeccCcEEeCCCchhhhhhccCCCCCCCCeeEEEEeecceEEEeEEEecCCCceEEeeeeeeEEEEeEEE
Q 013402 137 IHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTI 216 (443)
Q Consensus 137 i~~~~~~nv~I~G~~G~idG~G~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I 216 (443)
++..+..++.|.|- +|.|...- .-..|...|++.++++..|.+-.+.. ...+|..+.+++..|++-++
T Consensus 123 i~l~~s~d~~i~~n--~i~G~~~~---------r~~~rGnGI~vyNa~~a~V~~ndisy-~rDgIy~~~S~~~~~~gnr~ 190 (408)
T COG3420 123 IYLHGSADVRIEGN--TIQGLADL---------RVAERGNGIYVYNAPGALVVGNDISY-GRDGIYSDTSQHNVFKGNRF 190 (408)
T ss_pred EEEeccCceEEEee--EEeecccc---------chhhccCceEEEcCCCcEEEcCcccc-ccceEEEcccccceecccch
Confidence 44455666677763 55553210 12345667888888888888766643 24577777788777777777
Q ss_pred ECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCC-CceEEEc
Q 013402 217 LAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGIAVG 287 (443)
Q Consensus 217 ~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~-~~gi~ig 287 (443)
+.. .-|.|...+++..|+++..+...-|.++.- +++++|+|+.-++. ++||-+.
T Consensus 191 ~~~-----RygvHyM~t~~s~i~dn~s~~N~vG~ALMy------------s~~l~V~~nrS~Gnrd~Gilln 245 (408)
T COG3420 191 RDL-----RYGVHYMYTNDSRISDNSSRDNRVGYALMY------------SDRLKVSDNRSSGNRDHGILLN 245 (408)
T ss_pred hhe-----eeeEEEEeccCcEeecccccCCcceEEEEE------------eccEEEEcCcccCccccceeee
Confidence 653 457788888888888888877777777764 67778877777665 6666554
No 56
>PLN02916 pectinesterase family protein
Probab=97.14 E-value=0.077 Score=54.60 Aligned_cols=46 Identities=15% Similarity=0.353 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhhhhc--cCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLR--RSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~--~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
-|-..||+||+++.... ....-+|+|.||+|.- .+.+ |.+++|.++
T Consensus 197 G~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~E-~V~I~~~k~~i~l~G~ 247 (502)
T PLN02916 197 GTHRTINQALAALSRMGKSRTNRVIIYVKAGVYNE-KVEIDRHMKNVMFVGD 247 (502)
T ss_pred CCccCHHHHHHhcccccCCCCceEEEEEeCceeeE-EEEecCCCceEEEEec
Confidence 35778999999985110 0123489999999973 3333 245566544
No 57
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.13 E-value=0.059 Score=56.16 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHhhhhccCCCeEEEECCCceEEE
Q 013402 54 NTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTG 86 (443)
Q Consensus 54 dt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~ 86 (443)
+-..||+||+++... ..+.-+|+|.||+|.-.
T Consensus 243 ~f~TIq~Av~a~p~~-~~~r~vI~Vk~GvY~E~ 274 (537)
T PLN02506 243 HYRTITEAINEAPNH-SNRRYIIYVKKGVYKEN 274 (537)
T ss_pred CccCHHHHHHhchhc-CCCcEEEEEeCCeeeEE
Confidence 578999999998521 12345899999999743
No 58
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.11 E-value=0.099 Score=54.23 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEec---cccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLT---SHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l~---s~~tl~~~ 99 (443)
-|-..||+||+++... ....-+|+|.||+|.- .+.++ .+++|.++
T Consensus 216 G~f~TIq~Ai~a~P~~-~~~r~vI~Ik~GvY~E-~V~I~~~k~~i~l~G~ 263 (520)
T PLN02201 216 GNFTTIMDAVLAAPDY-STKRYVIYIKKGVYLE-NVEIKKKKWNIMMVGD 263 (520)
T ss_pred CCccCHHHHHHhchhc-CCCcEEEEEeCceeEE-EEEecCCCceEEEEec
Confidence 4578999999998521 1224589999999973 33332 34555544
No 59
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.07 E-value=0.061 Score=56.47 Aligned_cols=136 Identities=12% Similarity=0.096 Sum_probs=74.7
Q ss_pred EeecceEEEeEEEecCCC----ceEEe-eeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccC
Q 013402 181 MNSRSIIISNVIFQNSPF----WNIHP-VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 255 (443)
Q Consensus 181 ~~~~nv~I~~v~i~n~~~----~~i~~-~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg 255 (443)
...+++..++++|+|... ..+.+ ...+...+.+|+|... .|-+... ..+-..+||+|...=|-| ++
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~-----QDTLy~~-~~Rqyy~~C~I~GtVDFI-FG-- 407 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAY-----QDTLYTH-SLRQFYRECDIYGTVDFI-FG-- 407 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccC-----CcceEEC-CCCEEEEeeEEeccccee-cc--
Confidence 345788888999988632 12222 3567788888888763 3444433 345678888887643422 22
Q ss_pred ccccccccCCCcccEEEEEEEEeCCC------ceEEEcc-ccCCcEEEEEEEeeEEeCCceeE----EEEeecCCC-ceE
Q 013402 256 WDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNVGVGI----HVKTNIGRG-GFI 323 (443)
Q Consensus 256 ~~~~g~~~~~~~~ni~i~n~~~~~~~------~gi~igs-~~~~~v~nI~i~n~~~~~~~~gi----~i~s~~~~~-g~v 323 (443)
.-...++||.+.... ..|.-.+ .....-..+.|.||++....... ..+.+-|+. ..-
T Consensus 408 -----------~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 476 (566)
T PLN02713 408 -----------NAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEY 476 (566)
T ss_pred -----------cceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCCcccccccccceeeecCCCCc
Confidence 356778888875421 1222211 12223457888888887642100 011221222 234
Q ss_pred EEEEEEeEEEccc
Q 013402 324 RNITVSDVYMENA 336 (443)
Q Consensus 324 ~nI~~~ni~~~~~ 336 (443)
..+.|.+..|.+.
T Consensus 477 sr~V~~~s~~~~~ 489 (566)
T PLN02713 477 SRTVVMQSYIDGL 489 (566)
T ss_pred ceEEEEecccCCe
Confidence 5666777766653
No 60
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.06 E-value=0.073 Score=56.70 Aligned_cols=136 Identities=13% Similarity=0.107 Sum_probs=80.8
Q ss_pred EeecceEEEeEEEecCCC----ceEEe-eeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccC
Q 013402 181 MNSRSIIISNVIFQNSPF----WNIHP-VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 255 (443)
Q Consensus 181 ~~~~nv~I~~v~i~n~~~----~~i~~-~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg 255 (443)
...+++..++++|+|... ..+-+ ...+...+.+|+|... .|-+... ..+-..++|+|...=|-| + |
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~-----QDTLy~~-~~Rqyy~~C~I~GtVDFI-F--G 404 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGY-----QDTLYAH-SHRQFYRDCTISGTIDFL-F--G 404 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeec-----cchhccC-CCcEEEEeCEEEEeccEE-e--c
Confidence 346688888899988643 22333 3578899999999873 3444433 456788999998744432 2 2
Q ss_pred ccccccccCCCcccEEEEEEEEeCCC------ceEEEcc-ccCCcEEEEEEEeeEEeCCceeEE----EEeecCCC-ceE
Q 013402 256 WDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNVGVGIH----VKTNIGRG-GFI 323 (443)
Q Consensus 256 ~~~~g~~~~~~~~ni~i~n~~~~~~~------~gi~igs-~~~~~v~nI~i~n~~~~~~~~gi~----i~s~~~~~-g~v 323 (443)
.....++||.+.... .-|.-.+ .....-..+.|.||++.....-+. .+.+-|+. ...
T Consensus 405 -----------~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~y 473 (670)
T PLN02217 405 -----------DAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEY 473 (670)
T ss_pred -----------CceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCccccccccccceeeccCCCCC
Confidence 346888899887531 1122111 112234578999999987532111 11222222 335
Q ss_pred EEEEEEeEEEccc
Q 013402 324 RNITVSDVYMENA 336 (443)
Q Consensus 324 ~nI~~~ni~~~~~ 336 (443)
..+.|-+..|.+.
T Consensus 474 srvVf~~t~l~~~ 486 (670)
T PLN02217 474 SRTIIMNTFIPDF 486 (670)
T ss_pred ceEEEEecccCCe
Confidence 6777888777764
No 61
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.04 E-value=0.093 Score=54.83 Aligned_cols=136 Identities=13% Similarity=0.096 Sum_probs=69.5
Q ss_pred EeecceEEEeEEEecCCC----ceEEe-eeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccC
Q 013402 181 MNSRSIIISNVIFQNSPF----WNIHP-VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 255 (443)
Q Consensus 181 ~~~~nv~I~~v~i~n~~~----~~i~~-~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg 255 (443)
...+++..++++|+|... ..+-+ ...+...+.+|+|...- |-+... ..+-..+||+|...=|-| ++
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-FG-- 379 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQ-----DTLMVH-SQRQFYRECYIYGTVDFI-FG-- 379 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEeccc-----chhccC-CCceEEEeeEEeeccceE-ec--
Confidence 345677788888887642 22222 34667778888777632 333322 344577778877643322 22
Q ss_pred ccccccccCCCcccEEEEEEEEeCCC------ceEEEcc-ccCCcEEEEEEEeeEEeCCceeE----EEEeecCCC-ceE
Q 013402 256 WDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNVGVGI----HVKTNIGRG-GFI 323 (443)
Q Consensus 256 ~~~~g~~~~~~~~ni~i~n~~~~~~~------~gi~igs-~~~~~v~nI~i~n~~~~~~~~gi----~i~s~~~~~-g~v 323 (443)
.....++||.+.... .-|.-.+ .....-..+.|.||++.+..... ..+.+-|+. ..-
T Consensus 380 -----------~a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 448 (539)
T PLN02995 380 -----------NAAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAPDLKPVVRTVKTYMGRPWMKF 448 (539)
T ss_pred -----------ccceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCC
Confidence 245677777765421 1111111 11123356777888777642110 011222222 234
Q ss_pred EEEEEEeEEEccc
Q 013402 324 RNITVSDVYMENA 336 (443)
Q Consensus 324 ~nI~~~ni~~~~~ 336 (443)
..+.|-+..|.+.
T Consensus 449 srvv~~~t~~~~~ 461 (539)
T PLN02995 449 SRTVVLQTYLDNV 461 (539)
T ss_pred cceEEEeccccCc
Confidence 4566666666554
No 62
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.02 E-value=0.054 Score=53.47 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=37.4
Q ss_pred EEeeccccCCCcchhHHHHHHHHHHhhhhccCCCeEEEECCC-ceEEE-EeEeccccEEEEccCcEEEec
Q 013402 40 SITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPG-VYLTG-SFNLTSHMTLYLAKGAVIKAT 107 (443)
Q Consensus 40 nV~dyGa~gDg~tddt~aiq~Ai~~~~~~~~~gg~~V~ip~G-~Y~~~-~l~l~s~~tl~~~~ga~l~~~ 107 (443)
.|+.|=..|+. | +..||+. -++|.+-|| +|.+. ++.|++...+.+. ||+++..
T Consensus 45 qvkt~~~~P~e--D----le~~I~~--------haKVaL~Pg~~Y~i~~~V~I~~~cYIiGn-GA~V~v~ 99 (386)
T PF01696_consen 45 QVKTYWMEPGE--D----LEEAIRQ--------HAKVALRPGAVYVIRKPVNIRSCCYIIGN-GATVRVN 99 (386)
T ss_pred eEEEEEcCCCc--C----HHHHHHh--------cCEEEeCCCCEEEEeeeEEecceEEEECC-CEEEEEe
Confidence 56667666653 3 4555553 236777777 69986 9999999999665 8998874
No 63
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.00 E-value=0.063 Score=56.12 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHhhhhcc--CCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRR--SGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~--~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
-+-..||+||+++..... .+.-+|+|.+|+|.- .+.+ |.+++|.++
T Consensus 233 G~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~E-~V~i~~~k~~i~l~G~ 283 (538)
T PLN03043 233 DNFTTITDAIAAAPNNSKPEDGYFVIYAREGYYEE-YVVVPKNKKNIMLIGD 283 (538)
T ss_pred CCCcCHHHHHHhccccCCCCcceEEEEEcCeeeEE-EEEeCCCCCcEEEEec
Confidence 357899999999852110 012489999999973 3333 345555544
No 64
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.97 E-value=0.096 Score=55.08 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=69.3
Q ss_pred eecceEEEeEEEecCCCc----eEEe-eeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCc
Q 013402 182 NSRSIIISNVIFQNSPFW----NIHP-VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGW 256 (443)
Q Consensus 182 ~~~nv~I~~v~i~n~~~~----~i~~-~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~ 256 (443)
..+++..++++|+|...- .+.+ ...+...+.+|+|...- |-+... ..+-..+||+|...=|-| ++
T Consensus 343 ~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q-----DTLy~~-~~rq~y~~C~I~GtvDFI-FG--- 412 (565)
T PLN02468 343 FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQ-----DTLYAH-AQRQFYRECNIYGTVDFI-FG--- 412 (565)
T ss_pred ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEecc-----chhccC-CCceEEEeeEEeccccee-ec---
Confidence 456788888888876421 2222 35677778888887632 333333 344567778777643322 22
Q ss_pred cccccccCCCcccEEEEEEEEeCC------CceEEEcc-ccCCcEEEEEEEeeEEeCCceeEEEEeecCCC-ceEEEEEE
Q 013402 257 DEYGIAYGHPSSGITIRRVTGSSP------FSGIAVGS-ETSGGVENVLAEHINLYNVGVGIHVKTNIGRG-GFIRNITV 328 (443)
Q Consensus 257 ~~~g~~~~~~~~ni~i~n~~~~~~------~~gi~igs-~~~~~v~nI~i~n~~~~~~~~gi~i~s~~~~~-g~v~nI~~ 328 (443)
.-...++||.+... ...|.-.+ .....-..+.|.||++......-..+.+-|+. ..-..+.|
T Consensus 413 ----------~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~yLGRPW~~~sr~v~ 482 (565)
T PLN02468 413 ----------NSAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLGDLTSVKTFLGRPWKNYSTTVI 482 (565)
T ss_pred ----------cceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCCCccccceeeecCCCCCceEEE
Confidence 34577777777532 12222221 11223456778888877643211112222222 22345566
Q ss_pred EeEEEcc
Q 013402 329 SDVYMEN 335 (443)
Q Consensus 329 ~ni~~~~ 335 (443)
-+..|..
T Consensus 483 ~~s~~~~ 489 (565)
T PLN02468 483 MHSMMGS 489 (565)
T ss_pred EecccCC
Confidence 6666655
No 65
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.93 E-value=0.15 Score=53.95 Aligned_cols=135 Identities=9% Similarity=0.037 Sum_probs=72.6
Q ss_pred EeecceEEEeEEEecCCC----ceEEe-eeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccC
Q 013402 181 MNSRSIIISNVIFQNSPF----WNIHP-VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 255 (443)
Q Consensus 181 ~~~~nv~I~~v~i~n~~~----~~i~~-~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg 255 (443)
...+++..++++|+|... ..+.+ ...+...+.+|+|...- |-+... ..+-..+||+|...=|-| ++
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-FG-- 439 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQ-----DTLYAQ-THRQFYRSCVITGTIDFI-FG-- 439 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecc-----cccccC-CCcEEEEeeEEEeeccEE-ec--
Confidence 356688888888888532 22222 35677888888888632 333332 345677888887644422 22
Q ss_pred ccccccccCCCcccEEEEEEEEeCC------CceEEEcc-ccCCcEEEEEEEeeEEeCCceeEE----EEeecCCC-ceE
Q 013402 256 WDEYGIAYGHPSSGITIRRVTGSSP------FSGIAVGS-ETSGGVENVLAEHINLYNVGVGIH----VKTNIGRG-GFI 323 (443)
Q Consensus 256 ~~~~g~~~~~~~~ni~i~n~~~~~~------~~gi~igs-~~~~~v~nI~i~n~~~~~~~~gi~----i~s~~~~~-g~v 323 (443)
.....++||.+... ...|.-.+ .....-..+.|.||++........ .+.+-|+. ..-
T Consensus 440 -----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 508 (596)
T PLN02745 440 -----------DAAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDEDLKPVKTEVKSYLGRPWKEF 508 (596)
T ss_pred -----------ceeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCccccccccccceeccCCCCCC
Confidence 34677778877542 11222211 111234567888888876431110 12222222 234
Q ss_pred EEEEEEeEEEcc
Q 013402 324 RNITVSDVYMEN 335 (443)
Q Consensus 324 ~nI~~~ni~~~~ 335 (443)
..+.|.+..|.+
T Consensus 509 srvv~~~s~l~~ 520 (596)
T PLN02745 509 SRTIVMESTIED 520 (596)
T ss_pred ccEEEEecccCC
Confidence 556666666655
No 66
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=96.93 E-value=0.093 Score=54.86 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
-|-..||+||+++... ....-+|+|.||+|.- .+.+ +.+++|.++
T Consensus 240 G~f~TIq~Ai~a~p~~-~~~r~vI~Ik~GvY~E-~V~i~~~k~~i~l~G~ 287 (541)
T PLN02416 240 GNFSTITDAINFAPNN-SNDRIIIYVREGVYEE-NVEIPIYKTNIVLIGD 287 (541)
T ss_pred CCccCHHHHHHhhhhc-CCceEEEEEeCceeEE-EEecCCCCccEEEEec
Confidence 3578999999998521 1123478999999973 3333 345666554
No 67
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=96.92 E-value=0.16 Score=52.76 Aligned_cols=137 Identities=9% Similarity=0.052 Sum_probs=70.3
Q ss_pred EEeecceEEEeEEEecCCC----ceEEe-eeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEcc
Q 013402 180 FMNSRSIIISNVIFQNSPF----WNIHP-VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKS 254 (443)
Q Consensus 180 ~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s 254 (443)
....+++..++++|+|... ..+.+ ...+.+.+.+|.|... .|-+... ..+-..++|+|...=|-| ++
T Consensus 301 ~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~-----QDTLy~~-~~Rqyy~~C~IeGtVDFI-FG- 372 (530)
T PLN02933 301 GVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGY-----QDTLYVH-SAKQFYRECDIYGTIDFI-FG- 372 (530)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEec-----ccccccC-CCceEEEeeEEeccccee-cc-
Confidence 3445678888888887642 22333 3467777888888763 2333332 344577788877643322 22
Q ss_pred CccccccccCCCcccEEEEEEEEeCCC------ceEEEccc-cCCcEEEEEEEeeEEeCCceeEE----EEeecCCC-ce
Q 013402 255 GWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGSE-TSGGVENVLAEHINLYNVGVGIH----VKTNIGRG-GF 322 (443)
Q Consensus 255 g~~~~g~~~~~~~~ni~i~n~~~~~~~------~gi~igs~-~~~~v~nI~i~n~~~~~~~~gi~----i~s~~~~~-g~ 322 (443)
.....++||.+.... ..|.-.+- ....-..+.|.||++........ .+.+-|+. ..
T Consensus 373 ------------~a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~ 440 (530)
T PLN02933 373 ------------NAAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAAPDLIPVKENFKAYLGRPWRK 440 (530)
T ss_pred ------------CceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceEeccCCCC
Confidence 245677777765421 12222221 11223467778887775321100 11111222 23
Q ss_pred EEEEEEEeEEEccc
Q 013402 323 IRNITVSDVYMENA 336 (443)
Q Consensus 323 v~nI~~~ni~~~~~ 336 (443)
-..+.|.+..|.+.
T Consensus 441 ysrvVf~~s~l~~~ 454 (530)
T PLN02933 441 YSRTVIIKSFIDDL 454 (530)
T ss_pred CceEEEEecccCCe
Confidence 45666666666653
No 68
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.91 E-value=0.18 Score=53.27 Aligned_cols=136 Identities=13% Similarity=0.133 Sum_probs=68.5
Q ss_pred EeecceEEEeEEEecCCC----ceEEe-eeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccC
Q 013402 181 MNSRSIIISNVIFQNSPF----WNIHP-VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 255 (443)
Q Consensus 181 ~~~~nv~I~~v~i~n~~~----~~i~~-~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg 255 (443)
...+++..++++|+|... ..+.+ ...+...+.+|+|... .|-+... ..+-..+||+|...=|-| + |
T Consensus 357 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~-----QDTLy~~-~~Rqyy~~C~I~GtVDFI-F--G 427 (587)
T PLN02484 357 ATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGY-----QDTLYVH-SNRQFFRECDIYGTVDFI-F--G 427 (587)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEecc-----CcccccC-CCcEEEEecEEEecccee-c--c
Confidence 345677778888887532 22222 2466777777777763 2333332 345567777777643322 2 1
Q ss_pred ccccccccCCCcccEEEEEEEEeCC------CceEEEccc-cCCcEEEEEEEeeEEeCCceeE----EEEeecCCC-ceE
Q 013402 256 WDEYGIAYGHPSSGITIRRVTGSSP------FSGIAVGSE-TSGGVENVLAEHINLYNVGVGI----HVKTNIGRG-GFI 323 (443)
Q Consensus 256 ~~~~g~~~~~~~~ni~i~n~~~~~~------~~gi~igs~-~~~~v~nI~i~n~~~~~~~~gi----~i~s~~~~~-g~v 323 (443)
.-...++||.+... ...|.-.+- ....-..+.|.||++.....-. ..+.+-|+. ...
T Consensus 428 -----------~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 496 (587)
T PLN02484 428 -----------NAAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAASDLAASKGSFPTYLGRPWKLY 496 (587)
T ss_pred -----------cceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCCccccccCccceeccCCCCCC
Confidence 34567777776542 112222211 1123356777777776532100 111222222 234
Q ss_pred EEEEEEeEEEccc
Q 013402 324 RNITVSDVYMENA 336 (443)
Q Consensus 324 ~nI~~~ni~~~~~ 336 (443)
..+.|.+..|.+.
T Consensus 497 srvV~~~s~i~~~ 509 (587)
T PLN02484 497 SRTVYMMSYMGDH 509 (587)
T ss_pred ceEEEEecccCCe
Confidence 5566666666553
No 69
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.89 E-value=0.00075 Score=47.45 Aligned_cols=38 Identities=26% Similarity=0.194 Sum_probs=23.3
Q ss_pred ccCCCcchhHHHHHHHHHHhhhhccCCCeEEEECCC-ceEEEEeE
Q 013402 46 GVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPG-VYLTGSFN 89 (443)
Q Consensus 46 a~gDg~tddt~aiq~Ai~~~~~~~~~gg~~V~ip~G-~Y~~~~l~ 89 (443)
|+|||++|||+||.+|+++. ..|.++=-.| ||.+++|.
T Consensus 1 A~GDGvtdDt~A~~a~l~a~------~~g~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS------PVGRKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS-------TTS-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhcc------CCCeEEecCCceEEEeeCc
Confidence 78999999999999999964 3445555666 78877653
No 70
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.31 Score=46.58 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe-ccc--cEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL-TSH--MTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l-~s~--~tl~~~ 99 (443)
++-..||+|+|++..-.......|.+.||.|. +.+.+ +++ +||+++
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~-e~v~Vp~~~~~ITLyGe 140 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQ-ETVYVPAAPGGITLYGE 140 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceec-eeEEecCCCCceeEEec
Confidence 56788999999986221112346778899996 33333 333 788766
No 71
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=96.82 E-value=0.13 Score=53.89 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
-|-..||+||+++... ....-+|+|.||+|.- .+.+ +.+++|.++
T Consensus 246 G~f~TIq~Ai~a~P~~-~~~r~vI~Ik~G~Y~E-~V~i~~~k~~i~l~G~ 293 (548)
T PLN02301 246 GKYKTVKEAVASAPDN-SKTRYVIYVKKGTYKE-NVEIGKKKKNLMLVGD 293 (548)
T ss_pred CCcccHHHHHHhhhhc-CCceEEEEEeCceeeE-EEEecCCCceEEEEec
Confidence 3578999999998511 1123489999999974 3333 345555544
No 72
>PLN02314 pectinesterase
Probab=96.75 E-value=0.18 Score=53.39 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=66.8
Q ss_pred EeecceEEEeEEEecCCC----ceEEe-eeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccC
Q 013402 181 MNSRSIIISNVIFQNSPF----WNIHP-VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 255 (443)
Q Consensus 181 ~~~~nv~I~~v~i~n~~~----~~i~~-~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg 255 (443)
...+++..++++|+|... -.+.+ ...+...+.+|+|... .|-+... +.+-..+||+|...=|-| ++
T Consensus 362 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~-----QDTLy~~-~~rq~y~~C~I~GtvDFI-FG-- 432 (586)
T PLN02314 362 AAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAF-----QDTLYAH-SNRQFYRDCDITGTIDFI-FG-- 432 (586)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEec-----cchheeC-CCCEEEEeeEEEecccee-cc--
Confidence 345677778888887632 12222 3456677777777753 2333322 344567777776543322 21
Q ss_pred ccccccccCCCcccEEEEEEEEeCC------CceEEEccc-cCCcEEEEEEEeeEEeCCceeEEEEeecCCC-ceEEEEE
Q 013402 256 WDEYGIAYGHPSSGITIRRVTGSSP------FSGIAVGSE-TSGGVENVLAEHINLYNVGVGIHVKTNIGRG-GFIRNIT 327 (443)
Q Consensus 256 ~~~~g~~~~~~~~ni~i~n~~~~~~------~~gi~igs~-~~~~v~nI~i~n~~~~~~~~gi~i~s~~~~~-g~v~nI~ 327 (443)
.-...++||.+... ...|.-.+. ....-..+.|.||++..... +..+++-|+. ..-..+.
T Consensus 433 -----------~a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~-~~~~~yLGRpW~~ysr~v 500 (586)
T PLN02314 433 -----------NAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFGN-LTAPTYLGRPWKDFSTTV 500 (586)
T ss_pred -----------CceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCCc-ccccccccCCCCCCceEE
Confidence 24566777776542 112221111 11233467777777766431 1112222222 2234555
Q ss_pred EEeEEEccc
Q 013402 328 VSDVYMENA 336 (443)
Q Consensus 328 ~~ni~~~~~ 336 (443)
|-+..|.+.
T Consensus 501 ~~~s~i~~~ 509 (586)
T PLN02314 501 IMQSYIGSF 509 (586)
T ss_pred EEecccCCc
Confidence 666666553
No 73
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.69 E-value=0.18 Score=53.28 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCceEE
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLT 85 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~ 85 (443)
-|-..||+||+++... ....-+|+|.+|+|.-
T Consensus 285 G~f~TI~~Av~a~p~~-~~~r~vI~ik~GvY~E 316 (587)
T PLN02313 285 GDFTTVAAAVAAAPEK-SNKRFVIHIKAGVYRE 316 (587)
T ss_pred CCCccHHHHHHhcccc-CCceEEEEEeCceeEE
Confidence 3578999999998511 1123489999999973
No 74
>PLN02197 pectinesterase
Probab=96.66 E-value=0.27 Score=51.89 Aligned_cols=45 Identities=11% Similarity=0.273 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
-|-..||+||+++... ....-+|+|.||+|.-. +.+ |.+++|.++
T Consensus 285 G~f~TIq~Ai~a~P~~-~~~r~vI~Ik~GvY~E~-V~I~~~k~ni~l~G~ 332 (588)
T PLN02197 285 GQFKTISQAVMACPDK-NPGRCIIHIKAGIYNEQ-VTIPKKKNNIFMFGD 332 (588)
T ss_pred CCcCCHHHHHHhcccc-CCceEEEEEeCceEEEE-EEccCCCceEEEEEc
Confidence 3577899999998511 11234789999999743 333 245666554
No 75
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.62 E-value=0.3 Score=51.44 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
-|-..||+||+++... ....-+|+|.||+|.- .+.+ +.+++|.++
T Consensus 269 G~f~TIq~Av~a~p~~-~~~r~vI~Ik~GvY~E-~V~i~~~k~~i~l~G~ 316 (572)
T PLN02990 269 GQYKTINEALNAVPKA-NQKPFVIYIKQGVYNE-KVDVTKKMTHVTFIGD 316 (572)
T ss_pred CCCcCHHHHHhhCccc-CCceEEEEEeCceeEE-EEEecCCCCcEEEEec
Confidence 3577899999998511 1123589999999974 3333 345666554
No 76
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=96.57 E-value=0.26 Score=50.69 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=30.1
Q ss_pred chhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEe---ccccEEEEc
Q 013402 52 TLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNL---TSHMTLYLA 99 (443)
Q Consensus 52 tddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l---~s~~tl~~~ 99 (443)
+-+-..||+||+++... ....-+|+|.||+|.- .+.+ |.+++|.++
T Consensus 206 sG~f~TIq~AI~a~P~~-~~~r~vI~Ik~GvY~E-~V~I~~~k~nItliGd 254 (509)
T PLN02488 206 SGKYNTVNAAIAAAPEH-SRKRFVIYIKTGVYDE-IVRIGSTKPNLTLIGD 254 (509)
T ss_pred CCCccCHHHHHHhchhc-CCCcEEEEEeCCeeEE-EEEecCCCccEEEEec
Confidence 34577899999998521 1123589999999974 3334 345666554
No 77
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=95.57 E-value=1.4 Score=43.81 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=25.8
Q ss_pred ceEEEeEEEecCC-CceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEec
Q 013402 185 SIIISNVIFQNSP-FWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIST 245 (443)
Q Consensus 185 nv~I~~v~i~n~~-~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~ 245 (443)
+|++.++.|...+ .-++.+....++.|.+|.+.+. -|..++.-....|+.|.|..
T Consensus 122 ~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf------~g~cl~~~~~~~VrGC~F~~ 177 (386)
T PF01696_consen 122 GVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF------HGTCLESWAGGEVRGCTFYG 177 (386)
T ss_pred eeEEEEEEEecCCccceeEEEecceEEEEeeEEecC------cceeEEEcCCcEEeeeEEEE
Confidence 4555555555444 3344444445555555555542 12233333445555555544
No 78
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=94.69 E-value=0.28 Score=45.86 Aligned_cols=73 Identities=25% Similarity=0.319 Sum_probs=52.9
Q ss_pred ccEEEEEEEEeCC-CceEEEcccc-CCcEEEEEEEeeEEeCCceeEEEEeecCCCceEEEEEEEeEEEcccCeeEEEEc
Q 013402 268 SGITIRRVTGSSP-FSGIAVGSET-SGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAG 344 (443)
Q Consensus 268 ~ni~i~n~~~~~~-~~gi~igs~~-~~~v~nI~i~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i~~ 344 (443)
.+.+|+||+|.+. ..||.+.... ...+.++.|+++.+.....|+.+.... .+ +.+ .++|..+++...+|.+..
T Consensus 122 s~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~--~~-~~n-~I~NN~I~~N~~Gi~~~~ 196 (246)
T PF07602_consen 122 SSPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDNA--AP-VEN-KIENNIIENNNIGIVAIG 196 (246)
T ss_pred CCcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEccc--CC-ccc-eeeccEEEeCCcCeEeec
Confidence 4899999999886 7888775442 457889999999999888899886543 23 332 447777776655776553
No 79
>PLN02773 pectinesterase
Probab=94.66 E-value=1.4 Score=43.03 Aligned_cols=140 Identities=8% Similarity=0.033 Sum_probs=85.4
Q ss_pred EeeeeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCC
Q 013402 202 HPVYCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP 280 (443)
Q Consensus 202 ~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~ 280 (443)
....++++..+|++|.|...........+. .++++.+.||.|....|-+..+. ..-.++||++.+.
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~-------------gr~yf~~c~IeG~ 163 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY-------------GKQYLRDCYIEGS 163 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC-------------CCEEEEeeEEeec
Confidence 344678999999999997532222333332 37889999999999888777654 3578999999885
Q ss_pred CceEEEccccCCcEEEEEEEeeEEeCCceeEEEEeecCCC--ceEEEEEEEeEEEcccCeeEEEEcccCCCCCCCCCCCC
Q 013402 281 FSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRG--GFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNA 358 (443)
Q Consensus 281 ~~gi~igs~~~~~v~nI~i~n~~~~~~~~gi~i~s~~~~~--g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~ 358 (443)
-=+-+|.. ...|++|++.....|. |. .+++. ..-....|.|+++.....+ ...|-++ +|.
T Consensus 164 -VDFIFG~g------~a~Fe~c~i~s~~~g~-IT-A~~r~~~~~~~GfvF~~c~it~~~~~---~~~yLGR---pW~--- 225 (317)
T PLN02773 164 -VDFIFGNS------TALLEHCHIHCKSAGF-IT-AQSRKSSQESTGYVFLRCVITGNGGS---GYMYLGR---PWG--- 225 (317)
T ss_pred -ccEEeecc------EEEEEeeEEEEccCcE-EE-CCCCCCCCCCceEEEEccEEecCCCC---cceeecC---CCC---
Confidence 22334532 5799999997654443 32 11110 1112456999999875321 1112111 111
Q ss_pred CCeEEeEEEEeEEEec
Q 013402 359 LPVVNGITIKDVWGTK 374 (443)
Q Consensus 359 ~~~i~nIt~~nI~~~~ 374 (443)
....+.|.|..+..
T Consensus 226 --~~a~vVf~~t~l~~ 239 (317)
T PLN02773 226 --PFGRVVFAYTYMDA 239 (317)
T ss_pred --CCceEEEEecccCC
Confidence 24577787777754
No 80
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=93.70 E-value=1.9 Score=39.42 Aligned_cols=128 Identities=19% Similarity=0.226 Sum_probs=60.9
Q ss_pred eEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEec-CCceEEEccCccccccccCCCcccEEEEEEEEeCC-CceEE
Q 013402 208 NVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIST-GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGIA 285 (443)
Q Consensus 208 ~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~-~~gi~ 285 (443)
..+++|+.|-.+ ..||||... +-+|+|+.+.. +.|++.++.. ...++|.+.-..+. +--|.
T Consensus 62 GatlkNvIiG~~----~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~-----------~~~~~I~ggga~~A~DKV~Q 124 (215)
T PF03211_consen 62 GATLKNVIIGAN----QADGIHCKG--SCTLENVWWEDVCEDAATFKGD-----------GGTVTIIGGGARNASDKVFQ 124 (215)
T ss_dssp TEEEEEEEETSS-----TT-EEEES--CEEEEEEEESS-SSESEEEESS-----------EEEEEEESTEEEEEEEEEEE
T ss_pred CCEEEEEEEcCC----CcCceEEcC--CEEEEEEEecccceeeeEEcCC-----------CceEEEeCCcccCCCccEEE
Confidence 345555555322 357787764 66777777776 7788888764 22444444433322 11111
Q ss_pred EccccCCcEEEEEEEeeEEeCCceeEEEEeecC---CCceEEEEEEEeEEEcccCeeEEEEcccCCCCCCCCCCCCCCeE
Q 013402 286 VGSETSGGVENVLAEHINLYNVGVGIHVKTNIG---RGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVV 362 (443)
Q Consensus 286 igs~~~~~v~nI~i~n~~~~~~~~gi~i~s~~~---~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i 362 (443)
.. +--.+.|+|-+..+ .|-.+.+-.+ .++.=++|.+++........-+-|..+|++ ..+|
T Consensus 125 ~N-----g~Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD----------~ati 187 (215)
T PF03211_consen 125 HN-----GGGTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD----------TATI 187 (215)
T ss_dssp E------SSEEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT----------TEEE
T ss_pred ec-----CceeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC----------eEEE
Confidence 11 11245666644443 3444444311 112335566666555443333445556553 1256
Q ss_pred EeEEEEe
Q 013402 363 NGITIKD 369 (443)
Q Consensus 363 ~nIt~~n 369 (443)
+++.++.
T Consensus 188 ~~~~~~~ 194 (215)
T PF03211_consen 188 SNSCIKG 194 (215)
T ss_dssp EEEEEEE
T ss_pred EEEEecC
Confidence 6666555
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=93.27 E-value=0.13 Score=34.31 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=13.8
Q ss_pred eecccCCccEEEEeeEEecCCceEEEcc
Q 013402 227 GIDPDSSSNVCIEDSYISTGDDLVAVKS 254 (443)
Q Consensus 227 Gi~~~~s~nv~I~n~~i~~gdD~i~i~s 254 (443)
||.++.+.+.+|+++.+....|||.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~ 28 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD 28 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe
Confidence 3444445555555555555444555543
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=91.87 E-value=0.26 Score=32.79 Aligned_cols=41 Identities=27% Similarity=0.165 Sum_probs=31.7
Q ss_pred eEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEec
Q 013402 200 NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIST 245 (443)
Q Consensus 200 ~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~ 245 (443)
+|.+..+.+.+|++.++.. +.+||++..+++-+|+++.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 3566777777888888876 3678998888888888888765
No 83
>PLN02480 Probable pectinesterase
Probab=91.74 E-value=7.7 Score=38.32 Aligned_cols=19 Identities=5% Similarity=0.058 Sum_probs=11.0
Q ss_pred CccEEEEeeEEecCCceEE
Q 013402 233 SSNVCIEDSYISTGDDLVA 251 (443)
Q Consensus 233 s~nv~I~n~~i~~gdD~i~ 251 (443)
++++.+.||.|....|-+.
T Consensus 164 gDra~f~~c~f~G~QDTLy 182 (343)
T PLN02480 164 ADKVAFYHCAFYSTHNTLF 182 (343)
T ss_pred CCcEEEEeeEEecccceeE
Confidence 5556666666666555444
No 84
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=90.81 E-value=13 Score=34.05 Aligned_cols=129 Identities=17% Similarity=0.129 Sum_probs=86.0
Q ss_pred ecceEEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCc-cEEEEeeEEecCCceEEEccCcccccc
Q 013402 183 SRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSS-NVCIEDSYISTGDDLVAVKSGWDEYGI 261 (443)
Q Consensus 183 ~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~-nv~I~n~~i~~gdD~i~i~sg~~~~g~ 261 (443)
-+..+|+++.|-.+...+||... +.+|+|+....-. .|.+.+.... .++|.+.-.++.+|=|-=..+
T Consensus 60 e~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedVc----EDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng------ 127 (215)
T PF03211_consen 60 EDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDVC----EDAATFKGDGGTVTIIGGGARNASDKVFQHNG------ 127 (215)
T ss_dssp ETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-S----SESEEEESSEEEEEEESTEEEEEEEEEEEE-S------
T ss_pred cCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecccc----eeeeEEcCCCceEEEeCCcccCCCccEEEecC------
Confidence 35789999999777778999887 7889999988743 6888888777 889999999887776533333
Q ss_pred ccCCCcccEEEEEEEEeCCCceEEEcc---ccC--CcEEEEEEEeeEEeCCceeEEEEeecCCCceEEEEEEEe
Q 013402 262 AYGHPSSGITIRRVTGSSPFSGIAVGS---ETS--GGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSD 330 (443)
Q Consensus 262 ~~~~~~~ni~i~n~~~~~~~~gi~igs---~~~--~~v~nI~i~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~n 330 (443)
.-.+.|.|-+... .|--+-| -.. +.-+++.+++........-+.|-...++...|+++.+..
T Consensus 128 -----~Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 128 -----GGTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIKG 194 (215)
T ss_dssp -----SEEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEEE
T ss_pred -----ceeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEecC
Confidence 3468888866543 3332222 221 234667777766544434456767777778888877776
No 85
>PLN02665 pectinesterase family protein
Probab=90.61 E-value=7.2 Score=38.83 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=10.4
Q ss_pred EEeecceEEEeEEEecC
Q 013402 180 FMNSRSIIISNVIFQNS 196 (443)
Q Consensus 180 ~~~~~nv~I~~v~i~n~ 196 (443)
...++++..++++|+|.
T Consensus 150 ~v~a~~F~a~nitf~Nt 166 (366)
T PLN02665 150 IVESDYFMAANIIIKNS 166 (366)
T ss_pred EEECCCeEEEeeEEEeC
Confidence 34456666666666664
No 86
>PLN02682 pectinesterase family protein
Probab=89.99 E-value=11 Score=37.55 Aligned_cols=54 Identities=9% Similarity=-0.010 Sum_probs=29.3
Q ss_pred CccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeC
Q 013402 233 SSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYN 306 (443)
Q Consensus 233 s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~ 306 (443)
+++..+.||.|....|-+..+. ..-.++||++.+. -=+-+|. -...|++|++..
T Consensus 195 gDr~~fy~C~f~G~QDTLy~~~-------------gRqyf~~C~IeG~-VDFIFG~------g~a~Fe~C~I~s 248 (369)
T PLN02682 195 ADTAAFYGCKFLGAQDTLYDHL-------------GRHYFKDCYIEGS-VDFIFGN------GLSLYEGCHLHA 248 (369)
T ss_pred CCcEEEEcceEeccccceEECC-------------CCEEEEeeEEccc-ccEEecC------ceEEEEccEEEE
Confidence 5666777777776666554443 2356666766653 1122232 145666666653
No 87
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=89.40 E-value=8.5 Score=34.09 Aligned_cols=41 Identities=12% Similarity=0.001 Sum_probs=22.6
Q ss_pred cccEEEEEEEEeCC-CceEEEc-c----ccCCcEEEEEEEeeEEeCC
Q 013402 267 SSGITIRRVTGSSP-FSGIAVG-S----ETSGGVENVLAEHINLYNV 307 (443)
Q Consensus 267 ~~ni~i~n~~~~~~-~~gi~ig-s----~~~~~v~nI~i~n~~~~~~ 307 (443)
.+|.+|+|++|.+. +.|+.-. . ...+.-.-.+++|+.+.++
T Consensus 63 F~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT 109 (198)
T PF08480_consen 63 FYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNT 109 (198)
T ss_pred ccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeee
Confidence 56777777777665 4444431 1 0112233466777777665
No 88
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=88.98 E-value=8.8 Score=37.21 Aligned_cols=54 Identities=6% Similarity=0.030 Sum_probs=27.8
Q ss_pred CccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeC
Q 013402 233 SSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYN 306 (443)
Q Consensus 233 s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~ 306 (443)
++++.+.||.|....|-+.... ....++||++++. -=+-.|.. ...|+||++..
T Consensus 114 ~d~~~f~~c~~~g~QDTL~~~~-------------~r~y~~~c~IeG~-vDFIfG~~------~a~f~~c~i~~ 167 (298)
T PF01095_consen 114 GDRAAFYNCRFLGYQDTLYANG-------------GRQYFKNCYIEGN-VDFIFGNG------TAVFENCTIHS 167 (298)
T ss_dssp -TSEEEEEEEEE-STT-EEE-S-------------SEEEEES-EEEES-EEEEEESS------EEEEES-EEEE
T ss_pred CCcEEEEEeEEccccceeeecc-------------ceeEEEeeEEEec-CcEEECCe------eEEeeeeEEEE
Confidence 4667777777777666555443 2456677777663 22333422 34677777763
No 89
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=88.18 E-value=2.8 Score=39.58 Aligned_cols=105 Identities=15% Similarity=0.181 Sum_probs=49.3
Q ss_pred CCeecccCCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEcccc-C----CcEEEEEE
Q 013402 225 TDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSET-S----GGVENVLA 299 (443)
Q Consensus 225 ~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~-~----~~v~nI~i 299 (443)
..=+|+.+.++..|+|..-++=.--++-+.|-+.--. .-.++.|..|.|..+.+ ..|+-||-.- . .--+|...
T Consensus 259 rqlvhvengkhfvirnvkaknitpdfskkagidnatv-aiygcdnfvidni~mvn-sagmligygvikg~ylsipqnfkl 336 (464)
T PRK10123 259 RQLIHVENGKHFVIRNIKAKNITPDFSKKAGIDNATV-AIYGCDNFVIDNIEMIN-SAGMLIGYGVIKGKYLSIPQNFKL 336 (464)
T ss_pred hheEEecCCcEEEEEeeeccccCCCchhhcCCCcceE-EEEcccceEEecccccc-ccccEEEeeeeeccEeccccccee
Confidence 4456777777777877776651101222222111000 00126677777766655 3455444321 0 11234444
Q ss_pred EeeEEeCC-----ceeEEEEeecCCCceEEEEEEEeEEEcc
Q 013402 300 EHINLYNV-----GVGIHVKTNIGRGGFIRNITVSDVYMEN 335 (443)
Q Consensus 300 ~n~~~~~~-----~~gi~i~s~~~~~g~v~nI~~~ni~~~~ 335 (443)
.|+.+.+. -+||.|.+ +...+=|-+.|+.|+.
T Consensus 337 n~i~ldn~~l~yklrgiqiss----gnatsfvaitn~~mkr 373 (464)
T PRK10123 337 NNIQLDNTHLAYKLRGIQISA----GNAVSFVALTNIEMKR 373 (464)
T ss_pred ceEeecccccceeeeeeEecc----CCcceEEEEeeeehhh
Confidence 44444443 35666654 2233444555555553
No 90
>PLN02634 probable pectinesterase
Probab=87.99 E-value=18 Score=35.91 Aligned_cols=20 Identities=5% Similarity=-0.056 Sum_probs=11.6
Q ss_pred CccEEEEeeEEecCCceEEE
Q 013402 233 SSNVCIEDSYISTGDDLVAV 252 (443)
Q Consensus 233 s~nv~I~n~~i~~gdD~i~i 252 (443)
+++..+.+|.|....|-+..
T Consensus 181 gDra~f~~C~f~G~QDTL~~ 200 (359)
T PLN02634 181 GDKAFFFGCGFYGAQDTLCD 200 (359)
T ss_pred CCcEEEEEeEEecccceeee
Confidence 45566666666665555443
No 91
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=87.96 E-value=1.6 Score=43.94 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=29.3
Q ss_pred ccEEEEEEEEeCC-----CceEEEccccCCcEEEEEEEeeEEeCCceeEEEEe-ecC----CCceEEEEEEEeEEEcccC
Q 013402 268 SGITIRRVTGSSP-----FSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKT-NIG----RGGFIRNITVSDVYMENAR 337 (443)
Q Consensus 268 ~ni~i~n~~~~~~-----~~gi~igs~~~~~v~nI~i~n~~~~~~~~gi~i~s-~~~----~~g~v~nI~~~ni~~~~~~ 337 (443)
.+-+|++++|.+. ..||+|-.+. ..|.|-+|++++-.....++.+.. .++ +...++|+.+.+.++-++.
T Consensus 245 n~n~V~gN~FiGng~~~~tGGIRIi~~~-H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~ 323 (425)
T PF14592_consen 245 NRNTVEGNVFIGNGVKEGTGGIRIIGEG-HTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCK 323 (425)
T ss_dssp SS-EEES-EEEE-SSSS-B--EEE-SBS--EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-S
T ss_pred CCceEeccEEecCCCcCCCCceEEecCC-cEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccC
Confidence 4445555555532 2355554332 234444444444333334444322 111 1234777777777777777
Q ss_pred eeEEEE
Q 013402 338 KGIKIA 343 (443)
Q Consensus 338 ~~i~i~ 343 (443)
.+|.+.
T Consensus 324 ~~i~~g 329 (425)
T PF14592_consen 324 SPIHFG 329 (425)
T ss_dssp EEEESS
T ss_pred CceEEc
Confidence 666554
No 92
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=87.76 E-value=32 Score=34.53 Aligned_cols=71 Identities=30% Similarity=0.521 Sum_probs=39.8
Q ss_pred cccEEEEEEEEeCC-CceEEEccccC--------C-----------cEEEEEEEeeEEeCCceeEEEEeecCCCceEEEE
Q 013402 267 SSGITIRRVTGSSP-FSGIAVGSETS--------G-----------GVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNI 326 (443)
Q Consensus 267 ~~ni~i~n~~~~~~-~~gi~igs~~~--------~-----------~v~nI~i~n~~~~~~~~gi~i~s~~~~~g~v~nI 326 (443)
..|+.++|.....+ .+|+-+++.+. + --.|=.|+|+...++ .|+.+. ++|.+++|+||
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~-~DG~~~yvsni 340 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIG-MDGKGGYVSNI 340 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCE-EECCS-EEEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeee-ecCCCceEeeE
Confidence 68899999987776 89999877521 0 023445666666655 455554 34667888888
Q ss_pred EEEeEEEcccCeeEEEE
Q 013402 327 TVSDVYMENARKGIKIA 343 (443)
Q Consensus 327 ~~~ni~~~~~~~~i~i~ 343 (443)
+.+++. ..++++.
T Consensus 341 ~~~d~~----g~G~~~~ 353 (549)
T PF09251_consen 341 TVQDCA----GAGIFIR 353 (549)
T ss_dssp EEES-S----SESEEEE
T ss_pred Eeeccc----CCceEEe
Confidence 877653 3455544
No 93
>PLN02176 putative pectinesterase
Probab=87.00 E-value=29 Score=34.23 Aligned_cols=20 Identities=20% Similarity=0.061 Sum_probs=11.4
Q ss_pred CccEEEEeeEEecCCceEEE
Q 013402 233 SSNVCIEDSYISTGDDLVAV 252 (443)
Q Consensus 233 s~nv~I~n~~i~~gdD~i~i 252 (443)
+++..+.||.|....|-+..
T Consensus 155 gDr~~f~~C~f~G~QDTLy~ 174 (340)
T PLN02176 155 GDKYAIIDSSFDGFQDTLFD 174 (340)
T ss_pred CccEEEEccEEecccceeEe
Confidence 45566666666665554443
No 94
>PLN02432 putative pectinesterase
Probab=86.92 E-value=16 Score=35.21 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=31.6
Q ss_pred CccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeC
Q 013402 233 SSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYN 306 (443)
Q Consensus 233 s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~ 306 (443)
+++..+.||.|....|-+....+ .-.++||++.+. -=+-+|.. ...|++|++..
T Consensus 120 gDr~~f~~c~~~G~QDTLy~~~g-------------r~yf~~c~I~G~-VDFIFG~g------~a~Fe~c~i~s 173 (293)
T PLN02432 120 GDRAAFYGCRILSYQDTLLDDTG-------------RHYYRNCYIEGA-TDFICGNA------ASLFEKCHLHS 173 (293)
T ss_pred CCcEEEEcceEecccceeEECCC-------------CEEEEeCEEEec-ccEEecCc------eEEEEeeEEEE
Confidence 56777777777776666554432 356777777664 22223321 35677777753
No 95
>PLN02671 pectinesterase
Probab=86.89 E-value=22 Score=35.35 Aligned_cols=54 Identities=7% Similarity=0.062 Sum_probs=28.6
Q ss_pred CccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeC
Q 013402 233 SSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYN 306 (443)
Q Consensus 233 s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~ 306 (443)
++++.+.||.|....|-+....+ .-.++||++.+. --+-+|.. ...|+||++..
T Consensus 185 gDra~f~~c~f~G~QDTLy~~~g-------------R~yf~~CyIeG~-VDFIFG~g------~A~Fe~C~I~s 238 (359)
T PLN02671 185 GDKAFFYKVRVLGAQDTLLDETG-------------SHYFYQCYIQGS-VDFIFGNA------KSLYQDCVIQS 238 (359)
T ss_pred CccEEEEcceEeccccccEeCCC-------------cEEEEecEEEEe-ccEEecce------eEEEeccEEEE
Confidence 56667777777666555544332 346666666653 11222321 34666666653
No 96
>PLN02916 pectinesterase family protein
Probab=86.66 E-value=28 Score=36.24 Aligned_cols=82 Identities=13% Similarity=0.052 Sum_probs=45.7
Q ss_pred eeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCce
Q 013402 205 YCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 283 (443)
Q Consensus 205 ~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~g 283 (443)
..+++..+|++|.|.........+.+. .++...+.+|.|....|-+..+++ .-.+++|++.+. -=
T Consensus 275 ~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~Gt-VD 340 (502)
T PLN02916 275 SGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL-------------RQFYRDCHIYGT-ID 340 (502)
T ss_pred ECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC-------------CEEEEecEEecc-cc
Confidence 445666666666665432222333322 356777778888777776665542 246677777664 12
Q ss_pred EEEccccCCcEEEEEEEeeEEeC
Q 013402 284 IAVGSETSGGVENVLAEHINLYN 306 (443)
Q Consensus 284 i~igs~~~~~v~nI~i~n~~~~~ 306 (443)
+-+|. -...|+||++.-
T Consensus 341 FIFG~------a~avFq~C~I~~ 357 (502)
T PLN02916 341 FIFGD------AAVVFQNCDIFV 357 (502)
T ss_pred eeccC------ceEEEecCEEEE
Confidence 22232 245677777653
No 97
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=86.51 E-value=27 Score=36.62 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=10.8
Q ss_pred CccEEEEeeEEecCCceEEEc
Q 013402 233 SSNVCIEDSYISTGDDLVAVK 253 (443)
Q Consensus 233 s~nv~I~n~~i~~gdD~i~i~ 253 (443)
++...+.||.|....|-+..+
T Consensus 340 gDr~~fy~C~f~GyQDTLy~~ 360 (529)
T PLN02170 340 SDKSVVYRCSVEGYQDSLYTH 360 (529)
T ss_pred CCcEEEEeeeEeccCCcceeC
Confidence 445555555555555544443
No 98
>PLN02497 probable pectinesterase
Probab=85.45 E-value=25 Score=34.52 Aligned_cols=53 Identities=11% Similarity=0.037 Sum_probs=27.7
Q ss_pred CccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEe
Q 013402 233 SSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLY 305 (443)
Q Consensus 233 s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~ 305 (443)
+++..+.||.|....|-+.... ..-.++||++.+. -=+-+|. -...|+||++.
T Consensus 149 gDr~~fy~C~f~G~QDTLy~~~-------------gRqyf~~C~IeG~-VDFIFG~------g~a~Fe~C~I~ 201 (331)
T PLN02497 149 GDKSAFYSCGFAGVQDTLWDSD-------------GRHYFKRCTIQGA-VDFIFGS------GQSIYESCVIQ 201 (331)
T ss_pred CCcEEEEeeEEeccccceeeCC-------------CcEEEEeCEEEec-ccEEccC------ceEEEEccEEE
Confidence 5666677777766555554332 2345666666553 1122232 13456666665
No 99
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=85.36 E-value=24 Score=31.36 Aligned_cols=69 Identities=20% Similarity=0.060 Sum_probs=50.6
Q ss_pred cceEEEeEEEecCCCceEEeee---------eeeEEEEeEEEECCCCC---CCCCeecccCCccEEEEeeEEec-CCceE
Q 013402 184 RSIIISNVIFQNSPFWNIHPVY---------CSNVVIRYVTILAPADS---PNTDGIDPDSSSNVCIEDSYIST-GDDLV 250 (443)
Q Consensus 184 ~nv~I~~v~i~n~~~~~i~~~~---------~~~v~i~~~~I~~~~~~---~n~DGi~~~~s~nv~I~n~~i~~-gdD~i 250 (443)
++|.|.+-+|.+...++|.+.. .++|.|++-.|...... .+..||-..+=.+.+|+|..|.. -.-+|
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai 81 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAI 81 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceE
Confidence 4788888888888777776643 35889999888875533 34567877766799999999987 44455
Q ss_pred EE
Q 013402 251 AV 252 (443)
Q Consensus 251 ~i 252 (443)
+-
T Consensus 82 ~~ 83 (198)
T PF08480_consen 82 AQ 83 (198)
T ss_pred EE
Confidence 54
No 100
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=85.00 E-value=32 Score=36.07 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=72.0
Q ss_pred eeeeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCC
Q 013402 203 PVYCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF 281 (443)
Q Consensus 203 ~~~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~ 281 (443)
....+++..+|++|.|.........+.+. .+....+.+|.|....|-+...++ .-.+++|++.+.
T Consensus 301 ~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~IeGt- 366 (530)
T PLN02933 301 GVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA-------------KQFYRECDIYGT- 366 (530)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC-------------ceEEEeeEEecc-
Confidence 45677889999999986543233444442 378899999999998887776653 358999999885
Q ss_pred ceEEEccccCCcEEEEEEEeeEEeCCc----eeEEEEeecCC--CceEEEEEEEeEEEccc
Q 013402 282 SGIAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNIGR--GGFIRNITVSDVYMENA 336 (443)
Q Consensus 282 ~gi~igs~~~~~v~nI~i~n~~~~~~~----~gi~i~s~~~~--~g~v~nI~~~ni~~~~~ 336 (443)
-=+-+|.. ...|+||++.-.. ..-.|. ..++ ...-..+.|.|+++...
T Consensus 367 VDFIFG~a------~avFq~C~i~~~~~~~~~~~~iT-Aq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 367 IDFIFGNA------AVVFQNCSLYARKPNPNHKIAFT-AQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred cceeccCc------eEEEeccEEEEeccCCCCceEEE-ecCCCCCCCCceEEEEeeEEecC
Confidence 22334432 4688999986421 111222 1221 11223567999999864
No 101
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=84.68 E-value=58 Score=34.51 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=10.4
Q ss_pred CccEEEEeeEEecCCceEEEc
Q 013402 233 SSNVCIEDSYISTGDDLVAVK 253 (443)
Q Consensus 233 s~nv~I~n~~i~~gdD~i~i~ 253 (443)
++.+.+.||.|....|-+..+
T Consensus 357 ~D~~~f~~c~~~G~QDTLy~~ 377 (553)
T PLN02708 357 SDLSVIENCEFLGNQDTLYAH 377 (553)
T ss_pred CCcEEEEeeeeeeccccceeC
Confidence 444555555555544444443
No 102
>PLN02304 probable pectinesterase
Probab=84.68 E-value=44 Score=33.48 Aligned_cols=54 Identities=11% Similarity=0.064 Sum_probs=30.0
Q ss_pred CccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeC
Q 013402 233 SSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYN 306 (443)
Q Consensus 233 s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~ 306 (443)
+++..+.||.|....|-+....+ .-.++||++++. -=+-+|.. ...|++|++..
T Consensus 194 gDra~fy~C~f~G~QDTLy~~~g-------------R~Yf~~CyIeG~-VDFIFG~g------~A~Fe~C~I~s 247 (379)
T PLN02304 194 GDQAAFWGCGFFGAQDTLHDDRG-------------RHYFKDCYIQGS-IDFIFGDA------RSLYENCRLIS 247 (379)
T ss_pred CCcEEEEeceEecccceeEeCCC-------------CEEEEeeEEccc-ccEEeccc------eEEEEccEEEE
Confidence 56677777777776665554332 355677777653 22223321 34666666653
No 103
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=83.99 E-value=26 Score=36.61 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=23.0
Q ss_pred eeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEcc
Q 013402 205 YCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKS 254 (443)
Q Consensus 205 ~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s 254 (443)
..+++..+|++|.|.........+.+. .+.+..+.||.|....|-+..++
T Consensus 268 ~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~ 318 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAA 318 (497)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCC
Confidence 344555555555553321111222221 24556666666666555555443
No 104
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=83.86 E-value=24 Score=38.12 Aligned_cols=112 Identities=10% Similarity=0.053 Sum_probs=72.7
Q ss_pred eeeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCc
Q 013402 204 VYCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 282 (443)
Q Consensus 204 ~~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~ 282 (443)
...+++..+|++|.|.........+.+. .+++..+.||.|....|-+..++ ..-.+++|++.+. -
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~-------------~Rqyy~~C~I~Gt-V 399 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS-------------HRQFYRDCTISGT-I 399 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC-------------CcEEEEeCEEEEe-c
Confidence 4577899999999997543333444442 47889999999999888777664 3468899999875 2
Q ss_pred eEEEccccCCcEEEEEEEeeEEeCCc----eeEEEEeecCC--CceEEEEEEEeEEEccc
Q 013402 283 GIAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNIGR--GGFIRNITVSDVYMENA 336 (443)
Q Consensus 283 gi~igs~~~~~v~nI~i~n~~~~~~~----~gi~i~s~~~~--~g~v~nI~~~ni~~~~~ 336 (443)
-+-+|.. ...|+||++.... ..-.|. ..++ ...-..+.|.|+++...
T Consensus 400 DFIFG~a------~avfq~C~I~~r~~~~~~~~~IT-Aqgr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 400 DFLFGDA------AAVFQNCTLLVRKPLLNQACPIT-AHGRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred cEEecCc------eEEEEccEEEEccCCCCCceeEe-cCCCCCCCCCceEEEEeeEEecC
Confidence 2333432 5789999997421 112232 2221 12234577999999875
No 105
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=83.48 E-value=21 Score=36.14 Aligned_cols=125 Identities=10% Similarity=0.049 Sum_probs=62.8
Q ss_pred eeeeeEEEEeEEEECCCCC----CCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEe
Q 013402 204 VYCSNVVIRYVTILAPADS----PNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGS 278 (443)
Q Consensus 204 ~~~~~v~i~~~~I~~~~~~----~n~DGi~~-~~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~ 278 (443)
...+++..+|++|.|.... .....+.+ ..++.+.+.+|.|....|-+.......+.+.. ..-...-.+++|+++
T Consensus 203 v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~-~~~~gRqYf~~CyIe 281 (422)
T PRK10531 203 SQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLE-TDRQPRTYVKNSYIE 281 (422)
T ss_pred EECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeecccccccccc-ccccccEEEEeCEEe
Confidence 4566677777777765421 11122222 13678888888888877766653210000000 000235778888887
Q ss_pred CCCceEEEccccCCcEEEEEEEeeEEeCCce----eEEEEeecCCCceEEEEEEEeEEEccc
Q 013402 279 SPFSGIAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGRGGFIRNITVSDVYMENA 336 (443)
Q Consensus 279 ~~~~gi~igs~~~~~v~nI~i~n~~~~~~~~----gi~i~s~~~~~g~v~nI~~~ni~~~~~ 336 (443)
+. -=+-+|.. ..+|+||++..... .-.|.-.......-....|.|+++...
T Consensus 282 G~-VDFIFG~g------~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 282 GD-VDFVFGRG------AVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred ec-ccEEccCc------eEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecC
Confidence 74 22333432 46788888865321 111211110111123456888888764
No 106
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=83.24 E-value=28 Score=36.49 Aligned_cols=83 Identities=10% Similarity=0.068 Sum_probs=50.5
Q ss_pred eeeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCc
Q 013402 204 VYCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 282 (443)
Q Consensus 204 ~~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~ 282 (443)
...+++..+|++|.|.........+.+. .++...+.||.|....|-+..+++ .-.+++|++++. -
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~Gt-V 355 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTM-------------RQFYRECRITGT-V 355 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCC-------------CEEEEeeEEeec-c
Confidence 4466777777777776432222333332 367788888888887776666543 346678888764 2
Q ss_pred eEEEccccCCcEEEEEEEeeEEeC
Q 013402 283 GIAVGSETSGGVENVLAEHINLYN 306 (443)
Q Consensus 283 gi~igs~~~~~v~nI~i~n~~~~~ 306 (443)
=+-+|. -...|+||++..
T Consensus 356 DFIFG~------a~avf~~C~i~~ 373 (520)
T PLN02201 356 DFIFGD------ATAVFQNCQILA 373 (520)
T ss_pred cEEecC------ceEEEEccEEEE
Confidence 222332 146778887764
No 107
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=83.03 E-value=19 Score=37.90 Aligned_cols=63 Identities=11% Similarity=0.036 Sum_probs=31.0
Q ss_pred eeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCC
Q 013402 205 YCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP 280 (443)
Q Consensus 205 ~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~ 280 (443)
..+++..+|++|.|.........+.+. .++...+.||.|....|-+..+++ .-.++||++.+.
T Consensus 321 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~Gt 384 (548)
T PLN02301 321 VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSL-------------RQFYRDSYITGT 384 (548)
T ss_pred ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCC-------------cEEEEeeEEEec
Confidence 345555555555554321112222221 245666666666666665555432 235666666553
No 108
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=82.09 E-value=25 Score=37.53 Aligned_cols=112 Identities=9% Similarity=0.075 Sum_probs=72.3
Q ss_pred eeeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCc
Q 013402 204 VYCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 282 (443)
Q Consensus 204 ~~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~ 282 (443)
...+++..+|++|.|.........+.+. .+....+.||.|....|-+...+ ..-.+++|++.+.-+
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~GtVD 435 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT-------------HRQFYRSCVITGTID 435 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC-------------CcEEEEeeEEEeecc
Confidence 4678899999999996532222333332 37899999999999888776654 346899999988622
Q ss_pred eEEEccccCCcEEEEEEEeeEEeCCc-----eeEEEEeecCC--CceEEEEEEEeEEEcccC
Q 013402 283 GIAVGSETSGGVENVLAEHINLYNVG-----VGIHVKTNIGR--GGFIRNITVSDVYMENAR 337 (443)
Q Consensus 283 gi~igs~~~~~v~nI~i~n~~~~~~~-----~gi~i~s~~~~--~g~v~nI~~~ni~~~~~~ 337 (443)
+-+|. -...|+||++.-.. .| .| +..++ ...-..+.|.|+++....
T Consensus 436 -FIFG~------a~avf~~C~i~~~~~~~~~~~-~i-TAq~r~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 436 -FIFGD------AAAIFQNCLIFVRKPLPNQQN-TV-TAQGRVDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred -EEecc------eeEEEEecEEEEecCCCCCCc-eE-EecCCCCCCCCceEEEEeeEEecCc
Confidence 33443 25789999987421 12 22 22221 122345679999998643
No 109
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=81.64 E-value=43 Score=33.84 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=24.7
Q ss_pred CCeEEEECCCceEEEEeEeccccEEEEccC
Q 013402 72 GGTLLYVPPGVYLTGSFNLTSHMTLYLAKG 101 (443)
Q Consensus 72 gg~~V~ip~G~Y~~~~l~l~s~~tl~~~~g 101 (443)
-...+++-+|+|....|.+.|.+.+.++.+
T Consensus 47 ~e~LIFlH~G~~e~~~i~I~sdvqiiGAs~ 76 (625)
T KOG1777|consen 47 EEKLIFLHEGTHETETIRITSDVQIIGASP 76 (625)
T ss_pred ccceEEEEeccccceEEEEcCCeeEeccCC
Confidence 356888999999977999999998876644
No 110
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=80.83 E-value=35 Score=35.64 Aligned_cols=138 Identities=12% Similarity=0.083 Sum_probs=85.4
Q ss_pred EEeecceEEEeEEEecCCCc----eEEe-eeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEcc
Q 013402 180 FMNSRSIIISNVIFQNSPFW----NIHP-VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKS 254 (443)
Q Consensus 180 ~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s 254 (443)
....+++..++++|+|.... .+-+ ...+...+.+|.|... .|-+... ..+-..++|+|...=|-| ++
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~-----QDTLy~~-~~rqyy~~C~I~G~vDFI-FG- 337 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGY-----QDTLYAA-ALRQFYRECDIYGTIDFI-FG- 337 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecc-----cchheeC-CCcEEEEeeEEEeccceE-ec-
Confidence 34578999999999997542 2333 3578999999999974 3444443 345689999999754433 32
Q ss_pred CccccccccCCCcccEEEEEEEEeCCC------ceEEE-ccccCCcEEEEEEEeeEEeCCceeEE----EEeecCCC-ce
Q 013402 255 GWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAV-GSETSGGVENVLAEHINLYNVGVGIH----VKTNIGRG-GF 322 (443)
Q Consensus 255 g~~~~g~~~~~~~~ni~i~n~~~~~~~------~gi~i-gs~~~~~v~nI~i~n~~~~~~~~gi~----i~s~~~~~-g~ 322 (443)
.....++||.+.... ..|.- +......-..+.|.||++........ .+.+-|+. ..
T Consensus 338 ------------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ 405 (497)
T PLN02698 338 ------------NAAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKK 405 (497)
T ss_pred ------------ccceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCCCC
Confidence 346789999986431 12332 22222334679999999987532111 12222332 33
Q ss_pred EEEEEEEeEEEcccC
Q 013402 323 IRNITVSDVYMENAR 337 (443)
Q Consensus 323 v~nI~~~ni~~~~~~ 337 (443)
-..+.|.+..|...-
T Consensus 406 ysr~vf~~s~l~~~I 420 (497)
T PLN02698 406 YSRAIVMESYIDDAI 420 (497)
T ss_pred CceEEEEecccCCcc
Confidence 567778887777643
No 111
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=79.86 E-value=26 Score=37.32 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=72.1
Q ss_pred eeeeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCC
Q 013402 203 PVYCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF 281 (443)
Q Consensus 203 ~~~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~ 281 (443)
....+++..+|++|.|.........+.+. .+++..+.||.|....|-+..+++ .-.+++|++.+.
T Consensus 356 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~Gt- 421 (587)
T PLN02484 356 AATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSN-------------RQFFRECDIYGT- 421 (587)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCC-------------cEEEEecEEEec-
Confidence 34678889999999986542223344432 378899999999998887776653 458899999875
Q ss_pred ceEEEccccCCcEEEEEEEeeEEeCCc----eeEEEEeecCC--CceEEEEEEEeEEEccc
Q 013402 282 SGIAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNIGR--GGFIRNITVSDVYMENA 336 (443)
Q Consensus 282 ~gi~igs~~~~~v~nI~i~n~~~~~~~----~gi~i~s~~~~--~g~v~nI~~~ni~~~~~ 336 (443)
-=+-+|. -...|+||++.-.. ..-.|. ..++ ...-..+.|.|+++...
T Consensus 422 VDFIFG~------a~avfq~C~i~~~~~~~~~~~~IT-Aq~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 422 VDFIFGN------AAVVLQNCSIYARKPMAQQKNTIT-AQNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred cceeccc------ceeEEeccEEEEecCCCCCceEEE-ecCCCCCCCCcEEEEEeeEEecC
Confidence 2222343 25689999997421 111222 2221 12234667999999764
No 112
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=79.50 E-value=15 Score=38.74 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=12.5
Q ss_pred CccEEEEeeEEecCCceEEEcc
Q 013402 233 SSNVCIEDSYISTGDDLVAVKS 254 (443)
Q Consensus 233 s~nv~I~n~~i~~gdD~i~i~s 254 (443)
+.++.+.||.|....|-+...+
T Consensus 346 ~D~~~fy~C~~~G~QDTLy~~~ 367 (537)
T PLN02506 346 SDQSAFYRCSMEGYQDTLYAHS 367 (537)
T ss_pred CCcEEEEcceeecccccceecC
Confidence 4556666666666555554443
No 113
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=79.42 E-value=16 Score=38.74 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=72.1
Q ss_pred eeeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCc
Q 013402 204 VYCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 282 (443)
Q Consensus 204 ~~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~ 282 (443)
...+++..+|++|.|.........+.+. .++...+.+|.|....|-+..+++ .-.+++|++++. -
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~Gt-V 402 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSL-------------RQFYRECDIYGT-V 402 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCC-------------CEEEEeeEEecc-c
Confidence 4568899999999997543333444432 478899999999998887777653 358999999875 2
Q ss_pred eEEEccccCCcEEEEEEEeeEEeCCc-----eeEEEEeecCC--CceEEEEEEEeEEEccc
Q 013402 283 GIAVGSETSGGVENVLAEHINLYNVG-----VGIHVKTNIGR--GGFIRNITVSDVYMENA 336 (443)
Q Consensus 283 gi~igs~~~~~v~nI~i~n~~~~~~~-----~gi~i~s~~~~--~g~v~nI~~~ni~~~~~ 336 (443)
=+-+|. -...|+||++.... .+ .|. ..++ ...-..+.|.|+++...
T Consensus 403 DFIFG~------a~avfq~C~i~~~~~~~~~~~-~iT-Aq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 403 DFIFGN------AAVVFQNCNLYPRLPMQGQFN-TIT-AQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred ceeccc------ceEEEeccEEEEecCCCCCcc-eee-ecCCCCCCCCCEEEEEcCEEecC
Confidence 233343 25789999996421 11 121 1111 12234567999998864
No 114
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=78.95 E-value=1.5 Score=25.32 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=13.4
Q ss_pred ChhHHHHHHHHHHHhhcc
Q 013402 1 MFRFLVTLSILLSYFNCF 18 (443)
Q Consensus 1 m~r~l~~~~~~~~l~~~~ 18 (443)
|||+++.+++++.|..|+
T Consensus 7 mKkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 488888888777777663
No 115
>PLN02314 pectinesterase
Probab=78.10 E-value=30 Score=36.93 Aligned_cols=113 Identities=10% Similarity=0.087 Sum_probs=72.6
Q ss_pred eeeeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCC
Q 013402 203 PVYCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF 281 (443)
Q Consensus 203 ~~~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~ 281 (443)
....+++..+|++|.|.........+.+. .+....+.||.|....|-+..+++ .-.++||++.+.
T Consensus 361 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~-------------rq~y~~C~I~Gt- 426 (586)
T PLN02314 361 AAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSN-------------RQFYRDCDITGT- 426 (586)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCC-------------CEEEEeeEEEec-
Confidence 34678889999999986532223334332 478899999999998887777653 358899999875
Q ss_pred ceEEEccccCCcEEEEEEEeeEEeCCc-----eeEEEEeecCC--CceEEEEEEEeEEEcccC
Q 013402 282 SGIAVGSETSGGVENVLAEHINLYNVG-----VGIHVKTNIGR--GGFIRNITVSDVYMENAR 337 (443)
Q Consensus 282 ~gi~igs~~~~~v~nI~i~n~~~~~~~-----~gi~i~s~~~~--~g~v~nI~~~ni~~~~~~ 337 (443)
-=+-+|. -...|+||++.-.. .+ .| +..++ ...-..+.|.|+++....
T Consensus 427 vDFIFG~------a~avf~~c~i~~~~~~~~~~~-~i-TA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 427 IDFIFGN------AAVVFQNCNIQPRQPLPNQFN-TI-TAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred cceeccC------ceeeeeccEEEEecCCCCCCc-eE-ecCCCCCCCCCCEEEEEeeEEecCC
Confidence 2233343 25789999996421 12 12 22222 122345679999998754
No 116
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=76.27 E-value=18 Score=38.21 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=42.2
Q ss_pred eeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCce
Q 013402 205 YCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 283 (443)
Q Consensus 205 ~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~g 283 (443)
..+++..+|++|.|.........+.+. .++++.+.+|.|....|-+..++ ..-.+++|++.+. -=
T Consensus 315 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~Gt-VD 380 (541)
T PLN02416 315 SGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS-------------FRQFYRECDIYGT-ID 380 (541)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC-------------CceEEEeeEEeec-cc
Confidence 345566666666664322122222221 25667777777777666555443 2346677777654 11
Q ss_pred EEEccccCCcEEEEEEEeeEEeC
Q 013402 284 IAVGSETSGGVENVLAEHINLYN 306 (443)
Q Consensus 284 i~igs~~~~~v~nI~i~n~~~~~ 306 (443)
+-+|. -...|+||++..
T Consensus 381 FIFG~------a~avfq~c~i~~ 397 (541)
T PLN02416 381 YIFGN------AAVVFQACNIVS 397 (541)
T ss_pred eeecc------ceEEEeccEEEE
Confidence 22232 145666666653
No 117
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=75.58 E-value=20 Score=37.98 Aligned_cols=113 Identities=11% Similarity=0.066 Sum_probs=71.9
Q ss_pred eeeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCc
Q 013402 204 VYCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 282 (443)
Q Consensus 204 ~~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~ 282 (443)
...+++..+|++|.|.........+.+. .+....+.||.|....|-+..+++ .-.+++|++.+. -
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~-------------rq~y~~C~I~Gt-v 407 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQ-------------RQFYRECNIYGT-V 407 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCC-------------ceEEEeeEEecc-c
Confidence 4567899999999987543223334332 478899999999998887776653 356899999885 2
Q ss_pred eEEEccccCCcEEEEEEEeeEEeCCce----eEEEEeecCC--CceEEEEEEEeEEEcccC
Q 013402 283 GIAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGR--GGFIRNITVSDVYMENAR 337 (443)
Q Consensus 283 gi~igs~~~~~v~nI~i~n~~~~~~~~----gi~i~s~~~~--~g~v~nI~~~ni~~~~~~ 337 (443)
=+-+|. -...|+||++.-... .-.|. ..++ ...-..+.|.|+++....
T Consensus 408 DFIFG~------a~avfq~c~i~~~~~~~~~~~~iT-A~~r~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 408 DFIFGN------SAVVFQNCNILPRRPMKGQQNTIT-AQGRTDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred ceeecc------ceEEEeccEEEEecCCCCCCceEE-ecCCCCCCCCceEEEEccEEecCC
Confidence 233343 257899999964211 11122 1221 122345779999998643
No 118
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=74.93 E-value=23 Score=37.32 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=8.4
Q ss_pred eecceEEEeEEEecC
Q 013402 182 NSRSIIISNVIFQNS 196 (443)
Q Consensus 182 ~~~nv~I~~v~i~n~ 196 (443)
..+++..++++|+|.
T Consensus 311 ~~~~F~a~~it~~Nt 325 (538)
T PLN03043 311 SGERFVAVDVTFRNT 325 (538)
T ss_pred ECCCEEEEeeEEEEC
Confidence 345566666666554
No 119
>PLN02197 pectinesterase
Probab=74.91 E-value=24 Score=37.58 Aligned_cols=81 Identities=10% Similarity=0.132 Sum_probs=42.6
Q ss_pred eeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCce
Q 013402 205 YCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 283 (443)
Q Consensus 205 ~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~g 283 (443)
..+++..+|++|.|.........+.+. .+....+.+|.|....|-+..+++ .-.+++|++.+. -=
T Consensus 362 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~-------------Rqyy~~C~I~Gt-VD 427 (588)
T PLN02197 362 ESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG-------------RQFYRNIVVSGT-VD 427 (588)
T ss_pred ECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC-------------CEEEEeeEEEec-cc
Confidence 455666666666664321122233321 256677777777776666655542 246677777654 11
Q ss_pred EEEccccCCcEEEEEEEeeEEe
Q 013402 284 IAVGSETSGGVENVLAEHINLY 305 (443)
Q Consensus 284 i~igs~~~~~v~nI~i~n~~~~ 305 (443)
+-+|. ....|+||++.
T Consensus 428 FIFG~------a~avfq~C~i~ 443 (588)
T PLN02197 428 FIFGK------SATVIQNSLIV 443 (588)
T ss_pred ccccc------eeeeeecCEEE
Confidence 11222 13566777664
No 120
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=71.98 E-value=26 Score=36.91 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=70.9
Q ss_pred eeeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCc
Q 013402 204 VYCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 282 (443)
Q Consensus 204 ~~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~ 282 (443)
...+++..+|++|.|.........+.+. .++...+.||.|....|-+..+++ .-.+++|++.+. -
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~-------------Rqyy~~C~I~Gt-V 374 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQ-------------RQFYRECYIYGT-V 374 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCCC-------------ceEEEeeEEeec-c
Confidence 4567888999999986532223444432 378899999999998887766543 358899999875 2
Q ss_pred eEEEccccCCcEEEEEEEeeEEeCCce----eEEEEeecCC--CceEEEEEEEeEEEccc
Q 013402 283 GIAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGR--GGFIRNITVSDVYMENA 336 (443)
Q Consensus 283 gi~igs~~~~~v~nI~i~n~~~~~~~~----gi~i~s~~~~--~g~v~nI~~~ni~~~~~ 336 (443)
=+-+|.. ...|+||++..... .-.|. ..++ ...-..+.|.|+++...
T Consensus 375 DFIFG~a------~avf~~C~i~~~~~~~~~~~~iT-A~~r~~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 375 DFIFGNA------AAVFQNCIILPRRPLKGQANVIT-AQGRADPFQNTGISIHNSRILPA 427 (539)
T ss_pred ceEeccc------ceEEeccEEEEecCCCCCcceEe-cCCCCCCCCCceEEEEeeEEecC
Confidence 2333432 46889999874311 11222 1221 12234677999999874
No 121
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=70.07 E-value=31 Score=36.85 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=65.2
Q ss_pred eeeeeEEEEeEEEECCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCc
Q 013402 204 VYCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 282 (443)
Q Consensus 204 ~~~~~v~i~~~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~ 282 (443)
...+++..+|++|.|.........+.+. .+....+.||.|....|-+..+++ .-.+++|++.+.-
T Consensus 359 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~-------------rq~y~~c~I~Gtv- 424 (587)
T PLN02313 359 AVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN-------------RQFFVKCHITGTV- 424 (587)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC-------------cEEEEeeEEeecc-
Confidence 4567788888888886532222333332 367888889998887777766653 3477888887752
Q ss_pred eEEEccccCCcEEEEEEEeeEEeCCc--ee-EEEEeecCC--CceEEEEEEEeEEEccc
Q 013402 283 GIAVGSETSGGVENVLAEHINLYNVG--VG-IHVKTNIGR--GGFIRNITVSDVYMENA 336 (443)
Q Consensus 283 gi~igs~~~~~v~nI~i~n~~~~~~~--~g-i~i~s~~~~--~g~v~nI~~~ni~~~~~ 336 (443)
=+-+|. -...|+||++.-.. .| ...-+..++ ...-..+.|.|+++...
T Consensus 425 DFIFG~------a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 425 DFIFGN------AAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred ceeccc------eeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecC
Confidence 122232 25678888886421 01 011122221 12234566888888754
No 122
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=64.67 E-value=1.9e+02 Score=30.31 Aligned_cols=20 Identities=15% Similarity=-0.026 Sum_probs=9.6
Q ss_pred CccEEEEeeEEecCCceEEE
Q 013402 233 SSNVCIEDSYISTGDDLVAV 252 (443)
Q Consensus 233 s~nv~I~n~~i~~gdD~i~i 252 (443)
+....+.+|.|....|-+..
T Consensus 311 ~Dra~Fy~C~f~GyQDTLy~ 330 (509)
T PLN02488 311 GDMSVIYRCRIEGYQDALYP 330 (509)
T ss_pred CCcEEEEcceeeccCcceee
Confidence 34455555555554444433
No 123
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=64.10 E-value=1.6e+02 Score=31.33 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=9.8
Q ss_pred CccEEEEeeEEecCCceEEE
Q 013402 233 SSNVCIEDSYISTGDDLVAV 252 (443)
Q Consensus 233 s~nv~I~n~~i~~gdD~i~i 252 (443)
++...+.||.|....|-+..
T Consensus 374 ~D~~~f~~c~~~G~QDTLy~ 393 (572)
T PLN02990 374 ADYAVFYNCQIDGYQDTLYV 393 (572)
T ss_pred CCcEEEEeeeEecccchhcc
Confidence 44455555555554444433
No 124
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=57.33 E-value=9.2 Score=28.48 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=18.6
Q ss_pred ChhHHHHHHHHHHHhhcccccccccc
Q 013402 1 MFRFLVTLSILLSYFNCFSLASVVTC 26 (443)
Q Consensus 1 m~r~l~~~~~~~~l~~~~~~~~~~~~ 26 (443)
|||.++.+++++.|...+.+..+...
T Consensus 1 MKK~~~~~~~i~~l~~~s~~aA~~~~ 26 (80)
T PF11106_consen 1 MKKIIYGLFAILALASSSAFAAPTAV 26 (80)
T ss_pred ChhHHHHHHHHHHHHhcchhhhhhhh
Confidence 99999888777777766655555444
No 125
>PRK11627 hypothetical protein; Provisional
Probab=55.32 E-value=15 Score=33.07 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=20.1
Q ss_pred ChhHHHHHHHHHHHhhcccccccccccccc
Q 013402 1 MFRFLVTLSILLSYFNCFSLASVVTCSGIV 30 (443)
Q Consensus 1 m~r~l~~~~~~~~l~~~~~~~~~~~~~~~~ 30 (443)
|||+|+.++++++|..|+..+..++..+.+
T Consensus 2 lkklll~l~a~~~L~gCA~~p~~l~l~P~~ 31 (192)
T PRK11627 2 LKKILFPLVALFMLAGCATPSNTLEVSPKI 31 (192)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCEEEeCCcc
Confidence 567777777677788887766555555443
No 126
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=49.20 E-value=26 Score=27.82 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=16.2
Q ss_pred ChhHHHHHHHHHHHhhccccccc
Q 013402 1 MFRFLVTLSILLSYFNCFSLASV 23 (443)
Q Consensus 1 m~r~l~~~~~~~~l~~~~~~~~~ 23 (443)
||++|+...+.++|..|..-...
T Consensus 1 mKk~ll~~~lallLtgCatqt~~ 23 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCATQTFT 23 (97)
T ss_pred CcHHHHHHHHHHHHcccceeEEE
Confidence 99988888777777767543333
No 127
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=48.83 E-value=12 Score=29.57 Aligned_cols=7 Identities=29% Similarity=0.154 Sum_probs=2.7
Q ss_pred hhHHHHH
Q 013402 2 FRFLVTL 8 (443)
Q Consensus 2 ~r~l~~~ 8 (443)
|.+|++.
T Consensus 4 K~~llL~ 10 (95)
T PF07172_consen 4 KAFLLLG 10 (95)
T ss_pred hHHHHHH
Confidence 3334333
No 128
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=46.78 E-value=28 Score=18.95 Aligned_cols=11 Identities=45% Similarity=0.601 Sum_probs=5.1
Q ss_pred cEEEEeeEEec
Q 013402 235 NVCIEDSYIST 245 (443)
Q Consensus 235 nv~I~n~~i~~ 245 (443)
+++|++|.|..
T Consensus 3 ~~~i~~n~i~~ 13 (26)
T smart00710 3 NVTIENNTIRN 13 (26)
T ss_pred CEEEECCEEEe
Confidence 34444444444
No 129
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=43.37 E-value=1.9e+02 Score=26.51 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=17.3
Q ss_pred CCeEEEECCCceEEE-EeEeccc-cEEEEcc
Q 013402 72 GGTLLYVPPGVYLTG-SFNLTSH-MTLYLAK 100 (443)
Q Consensus 72 gg~~V~ip~G~Y~~~-~l~l~s~-~tl~~~~ 100 (443)
..++|.+..|.|.+. ++...+- ..+.++.
T Consensus 57 kPAkv~VknGK~~Vt~Tl~~S~wik~fkve~ 87 (217)
T TIGR03656 57 KPAKLIVKNGKMTVQITVNHSHWITGFKVEG 87 (217)
T ss_pred CCcEEEEECCEEEEEEEEecccceEEEEEcC
Confidence 456888999998766 5533222 2444544
No 130
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=41.92 E-value=1.7e+02 Score=23.96 Aligned_cols=12 Identities=0% Similarity=0.235 Sum_probs=6.9
Q ss_pred cceEEEeEEEec
Q 013402 184 RSIIISNVIFQN 195 (443)
Q Consensus 184 ~nv~I~~v~i~n 195 (443)
.+++++|+++.+
T Consensus 45 ~~~~~~G~~~~~ 56 (146)
T smart00722 45 NDVRVDGITIGG 56 (146)
T ss_pred CCCEEECeEEEe
Confidence 445666666654
No 131
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=40.59 E-value=47 Score=30.39 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=12.8
Q ss_pred ChhHHHHHHHHHHHhhc
Q 013402 1 MFRFLVTLSILLSYFNC 17 (443)
Q Consensus 1 m~r~l~~~~~~~~l~~~ 17 (443)
||+.++.+.++++|..|
T Consensus 1 mk~l~~~l~~~l~LsgC 17 (215)
T PF05643_consen 1 MKKLILGLAAALLLSGC 17 (215)
T ss_pred ChhHHHHHHHHHHHhhc
Confidence 89888887776666666
No 132
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=39.93 E-value=94 Score=28.52 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHHHhhcccccccccccccccCCCCCceE-EEeeccccCCCcchhHHHHHHHHHHhhhhccCCCeEEEEC
Q 013402 1 MFRFLVTLSILLSYFNCFSLASVVTCSGIVPMRYRNDKI-SITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVP 79 (443)
Q Consensus 1 m~r~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-nV~dyGa~gDg~tddt~aiq~Ai~~~~~~~~~gg~~V~ip 79 (443)
||...+.-+++++|++++..+.+++. +....... -++.| .-|+.+|-+-+... ++.++..
T Consensus 1 Mk~l~i~~~~~l~Laa~~~~a~~~s~-----a~t~~l~~evi~~y-------phDs~sfTQGL~~~-------~g~i~es 61 (262)
T COG3823 1 MKILSIRRLGGLVLAAAITGAAPVSI-----AITKVLVYEVIRTY-------PHDSTSFTQGLEYL-------DGHILES 61 (262)
T ss_pred CcceehhhhhhhHHHHhhccCCcchh-----ccccCcceEEEEec-------cCchhhhhcceeee-------CCEEEEe
Confidence 66444445555666656444333333 11122222 34445 56777887777742 3488888
Q ss_pred CCceEEEEe
Q 013402 80 PGVYLTGSF 88 (443)
Q Consensus 80 ~G~Y~~~~l 88 (443)
.|.|--+-|
T Consensus 62 TG~yg~S~i 70 (262)
T COG3823 62 TGLYGFSKI 70 (262)
T ss_pred cccccccee
Confidence 999854433
No 133
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=37.76 E-value=1.3e+02 Score=29.44 Aligned_cols=65 Identities=6% Similarity=0.009 Sum_probs=28.8
Q ss_pred CccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEe
Q 013402 233 SSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLY 305 (443)
Q Consensus 233 s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~ 305 (443)
++.+.++||.+....|-+-++..-.+..+... -.-.-.++||++.+ +--+-.|+. -.+|.+|.+.
T Consensus 220 gDka~frnv~llg~QdTlFv~~~~~~~~~~tn-~~~R~yftNsyI~G-dvDfIfGsg------taVFd~c~i~ 284 (405)
T COG4677 220 GDKAIFRNVNLLGNQDTLFVGNSGVQNRLETN-RQPRTYFTNSYIEG-DVDFIFGSG------TAVFDNCEIQ 284 (405)
T ss_pred CCceeeeeeeEeeccceEEecCCCCccccccC-cchhhheecceecc-cceEEeccc------eEEeccceEE
Confidence 45566666666665554444332000000000 01123456666655 344444543 2456666654
No 134
>TIGR03525 GldK gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=36.03 E-value=59 Score=33.33 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=14.3
Q ss_pred cCCCeEEEECCCceEEE
Q 013402 70 RSGGTLLYVPPGVYLTG 86 (443)
Q Consensus 70 ~~gg~~V~ip~G~Y~~~ 86 (443)
+.+.+.|.||.|.|.+|
T Consensus 36 ~~p~~mv~IpgG~f~mG 52 (449)
T TIGR03525 36 EKPYGMVLVPGGSFIMG 52 (449)
T ss_pred CCCCceEEECCcEEEeC
Confidence 45678899999999887
No 135
>PRK09752 adhesin; Provisional
Probab=31.50 E-value=9e+02 Score=28.29 Aligned_cols=13 Identities=8% Similarity=-0.112 Sum_probs=7.4
Q ss_pred eeEEEEeEEEEee
Q 013402 390 TGICLSNINLQGV 402 (443)
Q Consensus 390 ~ni~~~nv~~~~~ 402 (443)
-.+.+|+=+++..
T Consensus 347 g~~~i~~g~~~l~ 359 (1250)
T PRK09752 347 GEMQIENGEVTLG 359 (1250)
T ss_pred eeEEEeccEEEEe
Confidence 4456666665554
No 136
>PRK13792 lysozyme inhibitor; Provisional
Probab=30.71 E-value=51 Score=27.56 Aligned_cols=13 Identities=23% Similarity=0.094 Sum_probs=9.8
Q ss_pred ChhHHHHHHHHHH
Q 013402 1 MFRFLVTLSILLS 13 (443)
Q Consensus 1 m~r~l~~~~~~~~ 13 (443)
||+.|+++++.+.
T Consensus 1 mk~~l~~ll~~~~ 13 (127)
T PRK13792 1 MKKALWLLLAAVP 13 (127)
T ss_pred ChhHHHHHHHHHH
Confidence 8888777777666
No 137
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=30.16 E-value=1.4e+02 Score=24.43 Aligned_cols=68 Identities=19% Similarity=0.055 Sum_probs=41.0
Q ss_pred EeecceEEEeEEEecC---CCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEe-eEEecCCceEE
Q 013402 181 MNSRSIIISNVIFQNS---PFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIED-SYISTGDDLVA 251 (443)
Q Consensus 181 ~~~~nv~I~~v~i~n~---~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n-~~i~~gdD~i~ 251 (443)
..+.+..+.+-.+.+. ..+++.+..+.+..+.+-.+. .. .. .+|++++......+.+ ..+....||+.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 5566666666666665 367777776665555555454 11 11 6788887777777776 44444555554
No 138
>PRK09752 adhesin; Provisional
Probab=28.43 E-value=1e+03 Score=27.90 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=33.2
Q ss_pred eeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecC-----CceEEEccCccccccccCCCcccEEEEEEEEeCC
Q 013402 207 SNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTG-----DDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP 280 (443)
Q Consensus 207 ~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~g-----dD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~~ 280 (443)
.+..|.+.++.... .+.-.|.-.....+.|.+|.|.+. ..+|......+ ...-.+.|.|+.|.+.
T Consensus 96 ~~t~F~nNtasG~~--~sGGAIya~~~~~itI~ns~F~nN~A~g~GGAIYa~G~n~-------~g~v~l~I~NS~F~nN 165 (1250)
T PRK09752 96 GMTLFANNTVSGEY--NNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTND-------TGAVDLRVTNAMFRNN 165 (1250)
T ss_pred cceEeecceecCCc--CCccEEEecCcceeEEeeeEEEccccCCCCCEEEEcccCC-------CcceEEEEEecEEEcc
Confidence 45667777776411 122234332334578889988762 12233322100 0022477888888765
No 139
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=27.87 E-value=56 Score=26.62 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=16.7
Q ss_pred cchhHHHHHHHHHHhh-hhccCCCeEEEECC
Q 013402 51 KTLNTKAFREAIYRIQ-HLRRSGGTLLYVPP 80 (443)
Q Consensus 51 ~tddt~aiq~Ai~~~~-~~~~~gg~~V~ip~ 80 (443)
.+-.+.+|.+++++.- +.++.++.+|+++|
T Consensus 59 ~~a~t~~F~~aL~~~L~~~~~~h~~vILv~~ 89 (111)
T PF09677_consen 59 VEALTQRFMQALEASLAEYQAEHHVVILVSP 89 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeEEEech
Confidence 4456677888886532 23344555555555
No 140
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.99 E-value=52 Score=26.61 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=13.5
Q ss_pred ChhHHHHHHHHHHHhhc
Q 013402 1 MFRFLVTLSILLSYFNC 17 (443)
Q Consensus 1 m~r~l~~~~~~~~l~~~ 17 (443)
||+.|..++++++++.+
T Consensus 1 MKkil~~ilall~~ii~ 17 (113)
T COG5294 1 MKKILIGILALLLIIIG 17 (113)
T ss_pred CcchHHHHHHHHHHHHh
Confidence 99999988887777644
No 141
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=24.77 E-value=87 Score=28.38 Aligned_cols=27 Identities=33% Similarity=0.675 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHhhhhccCCCeEEEECCCce
Q 013402 53 LNTKAFREAIYRIQHLRRSGGTLLYVPPGVY 83 (443)
Q Consensus 53 ddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y 83 (443)
.+.+++++|.+.+. +|+..++||+|+-
T Consensus 83 ~~~~~~~~~~~~L~----~G~~l~IFPEGtr 109 (210)
T cd07986 83 KNRESLREALRHLK----NGGALIIFPAGRV 109 (210)
T ss_pred hhHHHHHHHHHHHh----CCCEEEEECCccc
Confidence 45677888888774 7888999999985
No 142
>PF05968 Bacillus_PapR: Bacillus PapR protein; InterPro: IPR009239 This family consists of the Bacillus species-specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific [].
Probab=24.35 E-value=62 Score=21.54 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=12.8
Q ss_pred ChhHHHHHHHHHHHhhcc
Q 013402 1 MFRFLVTLSILLSYFNCF 18 (443)
Q Consensus 1 m~r~l~~~~~~~~l~~~~ 18 (443)
||++|...++.+.+....
T Consensus 1 mkkll~~slltlam~~gi 18 (48)
T PF05968_consen 1 MKKLLIGSLLTLAMAWGI 18 (48)
T ss_pred CchHHHhHHHHHHHHhhh
Confidence 898888877766665443
No 143
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=24.09 E-value=48 Score=26.38 Aligned_cols=16 Identities=31% Similarity=0.964 Sum_probs=10.4
Q ss_pred cCCCeEEEECCCceEE
Q 013402 70 RSGGTLLYVPPGVYLT 85 (443)
Q Consensus 70 ~~gg~~V~ip~G~Y~~ 85 (443)
+.+|..|++|||.|+.
T Consensus 85 Q~~Ge~V~i~pg~~H~ 100 (114)
T PF02373_consen 85 QKPGEFVFIPPGAYHQ 100 (114)
T ss_dssp EETT-EEEE-TT-EEE
T ss_pred ECCCCEEEECCCceEE
Confidence 4578999999999863
No 144
>PRK09810 entericidin A; Provisional
Probab=24.02 E-value=69 Score=21.04 Aligned_cols=9 Identities=33% Similarity=0.456 Sum_probs=4.8
Q ss_pred ChhHHHHHH
Q 013402 1 MFRFLVTLS 9 (443)
Q Consensus 1 m~r~l~~~~ 9 (443)
|||.+.+++
T Consensus 2 Mkk~~~l~~ 10 (41)
T PRK09810 2 MKRLIVLVL 10 (41)
T ss_pred hHHHHHHHH
Confidence 566555443
No 145
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=23.18 E-value=70 Score=26.79 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=11.6
Q ss_pred ChhHHHHHHHHHHHhhcccc
Q 013402 1 MFRFLVTLSILLSYFNCFSL 20 (443)
Q Consensus 1 m~r~l~~~~~~~~l~~~~~~ 20 (443)
|||++-.|..+++++.|..|
T Consensus 1 Mk~l~~~l~~~~l~~~~l~~ 20 (132)
T PRK02515 1 MKRLLSLLTGFSLLLGLLGW 20 (132)
T ss_pred ChHHHHHHHHHHHHHHHHHh
Confidence 78766655555555555544
No 146
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=22.96 E-value=81 Score=24.00 Aligned_cols=10 Identities=50% Similarity=0.444 Sum_probs=6.2
Q ss_pred ChhHHHHHHH
Q 013402 1 MFRFLVTLSI 10 (443)
Q Consensus 1 m~r~l~~~~~ 10 (443)
|.|+|++|-+
T Consensus 1 MaRRlwiLsl 10 (100)
T PF05984_consen 1 MARRLWILSL 10 (100)
T ss_pred CchhhHHHHH
Confidence 7777765544
No 147
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=22.29 E-value=63 Score=21.98 Aligned_cols=13 Identities=8% Similarity=0.138 Sum_probs=6.3
Q ss_pred ChhHHHHHHHHHH
Q 013402 1 MFRFLVTLSILLS 13 (443)
Q Consensus 1 m~r~l~~~~~~~~ 13 (443)
|||.+.+++++++
T Consensus 2 mKk~i~~i~~~l~ 14 (48)
T PRK10081 2 VKKTIAAIFSVLV 14 (48)
T ss_pred hHHHHHHHHHHHH
Confidence 5565555444333
No 148
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=22.05 E-value=2e+02 Score=22.59 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=19.9
Q ss_pred eeccccC-CCcchhHHHHHHHHHHhhhhccCCCeEEEECCCceE
Q 013402 42 TDFGGVG-DGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYL 84 (443)
Q Consensus 42 ~dyGa~g-Dg~tddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~ 84 (443)
.|||..+ +.....-..+++||..-- ....+| ..|+|+
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi----~~~~tv--~~GtYr 47 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHI----KNPDTV--EKGTYR 47 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHH----H-TT-E--E--BET
T ss_pred cccCcccCCCChhhHHHHHHHHHHHh----CCCCeE--ecccee
Confidence 5799888 555566688999998754 344564 499997
No 149
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=21.66 E-value=2.5e+02 Score=27.97 Aligned_cols=31 Identities=23% Similarity=0.071 Sum_probs=24.8
Q ss_pred CCCceEEEeeccccCCCcchhHHHHHHHHHH
Q 013402 34 YRNDKISITDFGGVGDGKTLNTKAFREAIYR 64 (443)
Q Consensus 34 ~~~~~~nV~dyGa~gDg~tddt~aiq~Ai~~ 64 (443)
...+..-|-.=|+.+.--...-+||++|++.
T Consensus 23 ~~~~pliiAHRGas~~~PENTl~Af~~A~~~ 53 (355)
T PRK11143 23 DSAEKIVIAHRGASGYLPEHTLPAKAMAYAQ 53 (355)
T ss_pred cCCCcEEEECCCCCCCCCcchHHHHHHHHHc
Confidence 4455667888899988878888999999984
No 150
>PRK10449 heat-inducible protein; Provisional
Probab=20.73 E-value=74 Score=27.00 Aligned_cols=18 Identities=17% Similarity=0.360 Sum_probs=13.1
Q ss_pred ChhHHHHHHHHHHHhhcc
Q 013402 1 MFRFLVTLSILLSYFNCF 18 (443)
Q Consensus 1 m~r~l~~~~~~~~l~~~~ 18 (443)
|||++.++++.++|++|.
T Consensus 1 mk~~~~~~~~~~~l~~C~ 18 (140)
T PRK10449 1 MKKVVALVALSLLMAGCV 18 (140)
T ss_pred ChhHHHHHHHHHHHHHhc
Confidence 898887766666666664
No 151
>PHA00672 hypothetical protein
Probab=20.03 E-value=1.5e+02 Score=24.58 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=14.2
Q ss_pred eEEEECCCceEEEEeEecccc
Q 013402 74 TLLYVPPGVYLTGSFNLTSHM 94 (443)
Q Consensus 74 ~~V~ip~G~Y~~~~l~l~s~~ 94 (443)
-++.||+|+-++|.+.--+++
T Consensus 50 Rei~IPkGt~LtG~~hkf~~~ 70 (152)
T PHA00672 50 RTIRIPAGVALTGALIKVSTV 70 (152)
T ss_pred EEEeccCceeeeeeeeEeeEE
Confidence 377888888888865444444
Done!