BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013403
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 128/286 (44%), Gaps = 14/286 (4%)
Query: 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI 99
T + L + N+ G+IP NL ++L+ NRL G +P + +L +L + NN
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 100 NDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL- 158
+ N P L L L L +N F G I P + F Y+
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTI-------PAAMFKQSGKIAANFIAGKRYVYIK 576
Query: 159 -DNFKAMMHGNN-----ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDL 212
D K HG + + + L++ N G M +D+
Sbjct: 577 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 636
Query: 213 SSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ 272
S N G IP+ +G + L LN+ HN+++G IP + +L + LDLSSN L G IP
Sbjct: 637 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 273 LTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPL 318
+++L L+ ++LS N GPIP QF TFP ++ N GLCG+PL
Sbjct: 697 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 144/343 (41%), Gaps = 70/343 (20%)
Query: 9 LYYLDLS-NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
L +LD+S NNF T I + L S L H LD+ N +G R L
Sbjct: 199 LEFLDVSSNNFSTGIPF--------LGDCSALQH--LDISGNKLSGDFSRAISTCTELKL 248
Query: 68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE-ILPELQVLILRSNRFWGP 126
LN++ N+ GP+PP + L+ L++ N+ P++L L L L N F+G
Sbjct: 249 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 127 I---------------------GE--NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163
+ GE T++ L+++DLS NEF+G L L N A
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSA 365
Query: 164 MM-----HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILT---IFMTIDLSSN 215
+ NN S + N N + + L G K+ L+ +++ LS N
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 425
Query: 216 KFQGGIPEVVGKLNLLKGLNI------------------------SHNNLTGDIPSSLRN 251
G IP +G L+ L+ L + N+LTG+IPS L N
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 252 LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
T + + LS+N L G IP + L+ L++L LS N F G IP
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 120/255 (47%), Gaps = 64/255 (25%)
Query: 49 NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPP--SLVNCHHLEVLNVGNNQINDNFPNW 106
++ NG + F S +LTSL+L+ N L GP+ SL +C L+ LNV +N ++ FP
Sbjct: 84 SHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FP-- 138
Query: 107 LEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL--DNFKAM 164
G+ + + SL ++DLS N +G + G++ D +
Sbjct: 139 ---------------------GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 177
Query: 165 MH----GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG 220
H GN IS +VD +N +D+SSN F G
Sbjct: 178 KHLAISGNKISGDVDVSRCVN-------------------------LEFLDVSSNNFSTG 212
Query: 221 IPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPT-QLTSLKYL 279
IP +G + L+ L+IS N L+GD ++ TE++ L++SSN VG IP L SL+YL
Sbjct: 213 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 271
Query: 280 SVLNLSYNQFEGPIP 294
S L+ N+F G IP
Sbjct: 272 S---LAENKFTGEIP 283
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 131/288 (45%), Gaps = 39/288 (13%)
Query: 42 KVLDMRMNNFNGKIPRKFVKSCN-LTSLNLNGNRLEGPLPP------------------- 81
+ L + N F G+IP +C+ LT L+L+GN G +PP
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 82 ------SLVNCHHLEVLNVGNNQINDNFPNWLEIL-PELQVLILRSNRFWGPIGENTTIV 134
+L+ L+VL++ N+ + P L L L L L SN F GPI N
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 388
Query: 135 PFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT-----PLNSSNYYESI 189
P +L+ + L +N FTG + L N ++ ++ + +Y++ L S + +
Sbjct: 389 PKNTLQELYLQNNGFTGKI-PPTLSNCSELV---SLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 190 ILTIKGIDIKMERILTIFMTID---LSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP 246
L + ++ ++ + L T++ L N G IP + L +++S+N LTG+IP
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 247 SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
+ L + L LS+N G+IP +L + L L+L+ N F G IP
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 31 TQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLE 90
T FD+N + LDM N +G IP++ L LNL N + G +P + + L
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 91 VLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143
+L++ +N+++ P + L L + L +N GPI E FP + ++
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 128/286 (44%), Gaps = 14/286 (4%)
Query: 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI 99
T + L + N+ G+IP NL ++L+ NRL G +P + +L +L + NN
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 100 NDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL- 158
+ N P L L L L +N F G I P + F Y+
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTI-------PAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 159 -DNFKAMMHGNN-----ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDL 212
D K HG + + + L++ N G M +D+
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 213 SSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ 272
S N G IP+ +G + L LN+ HN+++G IP + +L + LDLSSN L G IP
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 273 LTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPL 318
+++L L+ ++LS N GPIP QF TFP ++ N GLCG+PL
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 144/343 (41%), Gaps = 70/343 (20%)
Query: 9 LYYLDLS-NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
L +LD+S NNF T I + L S L H LD+ N +G R L
Sbjct: 202 LEFLDVSSNNFSTGIPF--------LGDCSALQH--LDISGNKLSGDFSRAISTCTELKL 251
Query: 68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE-ILPELQVLILRSNRFWGP 126
LN++ N+ GP+PP + L+ L++ N+ P++L L L L N F+G
Sbjct: 252 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 127 I---------------------GE--NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163
+ GE T++ L+++DLS NEF+G L L N A
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSA 368
Query: 164 MM-----HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILT---IFMTIDLSSN 215
+ NN S + N N + + L G K+ L+ +++ LS N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 216 KFQGGIPEVVGKLNLLKGLNI------------------------SHNNLTGDIPSSLRN 251
G IP +G L+ L+ L + N+LTG+IPS L N
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 252 LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
T + + LS+N L G IP + L+ L++L LS N F G IP
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 120/255 (47%), Gaps = 64/255 (25%)
Query: 49 NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPP--SLVNCHHLEVLNVGNNQINDNFPNW 106
++ NG + F S +LTSL+L+ N L GP+ SL +C L+ LNV +N ++ FP
Sbjct: 87 SHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FP-- 141
Query: 107 LEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL--DNFKAM 164
G+ + + SL ++DLS N +G + G++ D +
Sbjct: 142 ---------------------GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180
Query: 165 MH----GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG 220
H GN IS +VD +N +D+SSN F G
Sbjct: 181 KHLAISGNKISGDVDVSRCVN-------------------------LEFLDVSSNNFSTG 215
Query: 221 IPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPT-QLTSLKYL 279
IP +G + L+ L+IS N L+GD ++ TE++ L++SSN VG IP L SL+YL
Sbjct: 216 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274
Query: 280 SVLNLSYNQFEGPIP 294
S L+ N+F G IP
Sbjct: 275 S---LAENKFTGEIP 286
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 39/290 (13%)
Query: 42 KVLDMRMNNFNGKIPRKFVKSCN-LTSLNLNGNRLEGPLPP------------------- 81
+ L + N F G+IP +C+ LT L+L+GN G +PP
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 82 ------SLVNCHHLEVLNVGNNQINDNFPNWLEIL-PELQVLILRSNRFWGPIGENTTIV 134
+L+ L+VL++ N+ + P L L L L L SN F GPI N
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 135 PFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT-----PLNSSNYYESI 189
P +L+ + L +N FTG + L N ++ ++ + +Y++ L S + +
Sbjct: 392 PKNTLQELYLQNNGFTGKI-PPTLSNCSELV---SLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 190 ILTIKGIDIKMERILTIFMTID---LSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP 246
L + ++ ++ + L T++ L N G IP + L +++S+N LTG+IP
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 247 SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296
+ L + L LS+N G+IP +L + L L+L+ N F G IP
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 31 TQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLE 90
T FD+N + LDM N +G IP++ L LNL N + G +P + + L
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 91 VLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143
+L++ +N+++ P + L L + L +N GPI E FP + ++
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 103/246 (41%), Gaps = 23/246 (9%)
Query: 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTT 132
N L GP+PP++ L L + + ++ P++L + L L N G + +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP--S 144
Query: 133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILT 192
I P+L I N +G + Y +F + IS + I T
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTIS----------RNRLTGKIPPT 193
Query: 193 IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNL 252
+++ +DLS N +G + G + ++++ N+L D+ +
Sbjct: 194 FANLNLAF---------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLS 243
Query: 253 TEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSG 312
+ LDL +N + G +P LT LK+L LN+S+N G IP+G F +Y N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Query: 313 LCGFPL 318
LCG PL
Sbjct: 304 LCGSPL 309
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 7/203 (3%)
Query: 48 MNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL 107
+NN G IP K L L + + G +P L L L+ N ++ P +
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 108 EILPELQVLILRSNRFWGPIGENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165
LP L + NR G I ++ F S+ I S N TG + + + A +
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI---SRNRLTGKIPPTFANLNLAFV 202
Query: 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERI-LTIFMT-IDLSSNKFQGGIPE 223
+ +E D S + I L + + ++ L+ + +DL +N+ G +P+
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 224 VVGKLNLLKGLNISHNNLTGDIP 246
+ +L L LN+S NNL G+IP
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 89/222 (40%), Gaps = 41/222 (18%)
Query: 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH 146
HLE++N Q FP L L+ L SN+ E V PSL +DLS
Sbjct: 331 QHLELVNCKFGQ----FPTL--KLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSR 380
Query: 147 NEFT----------GVLLTGYLD---NFKAMMHGNNISVEVDYMTPLNSSNYYE----SI 189
N + G + YLD N M N + +E SN + S+
Sbjct: 381 NGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440
Query: 190 ILTIKGIDIKMERILTIFMTIDLSSNKFQ-GGIPEVVGKLNLLK-GLNISHNNLTGDIPS 247
L+++ + I++ I + + GI + L +LK N N DI +
Sbjct: 441 FLSLRNL---------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 491
Query: 248 SLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289
LRNLT LDLS L PT SL L VLN+S+N F
Sbjct: 492 ELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 225 VGKLNLLKGLNISHNNLTG-DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL 279
+G L LK LN++HN + +P NLT +E LDLSSN + T L L +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 42 KVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN 100
+VL M N+F +P F + NLT L+L+ +LE P + + L+VLN+ +N
Sbjct: 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531
Query: 101 --DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150
D FP + L LQVL N + P SL ++L+ N+F
Sbjct: 532 SLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLTQNDFA 580
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI 269
+DLS + + P L+ L+ LN+SHNN + L ++ LD S N ++
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558
Query: 270 PTQLTSL-KYLSVLNLSYNQFEGPIPRGS 297
+L L+ LNL+ N F S
Sbjct: 559 KQELQHFPSSLAFLNLTQNDFACTCEHQS 587
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 88/222 (39%), Gaps = 41/222 (18%)
Query: 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH 146
HLE++N Q FP L L+ L SN+ E V PSL +DLS
Sbjct: 307 QHLELVNCKFGQ----FPTL--KLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSR 356
Query: 147 NEFT----------GVLLTGYLD---NFKAMMHGNNISVEVDYMTPLNSSNYYE----SI 189
N + G YLD N M N + +E SN + S+
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 190 ILTIKGIDIKMERILTIFMTIDLSSNKFQ-GGIPEVVGKLNLLK-GLNISHNNLTGDIPS 247
L+++ + I++ I + + GI + L +LK N N DI +
Sbjct: 417 FLSLRNL---------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 248 SLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289
LRNLT LDLS L PT SL L VLN+S+N F
Sbjct: 468 ELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 225 VGKLNLLKGLNISHNNLTG-DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL 276
+G L LK LN++HN + +P NLT +E LDLSSN + T L L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 46/191 (24%)
Query: 3 DLGIATLYYLDLS--------NNFL--TNIEY--FPPTNMTQLN-------------FDS 37
D G +L YLDLS +NFL +E+ F +N+ Q++ D
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 38 NLTH---------------KVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPP 81
+ TH +VL M N+F +P F + NLT L+L+ +LE P
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 82 SLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL 139
+ + L+VLN+ +N D FP + L LQVL N + P SL
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSL 545
Query: 140 RIIDLSHNEFT 150
++L+ N+F
Sbjct: 546 AFLNLTQNDFA 556
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI 269
+DLS + + P L+ L+ LN+SHNN + L ++ LD S N ++
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534
Query: 270 PTQLTSL-KYLSVLNLSYNQFEGPIPRGS 297
+L L+ LNL+ N F S
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFACTCEHQS 563
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 91/229 (39%), Gaps = 42/229 (18%)
Query: 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH 146
HLE++N Q FP L L+ L SN+ E V PSL +DLS
Sbjct: 307 QHLELVNCKFGQ----FPTL--KLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSR 356
Query: 147 NEFT----------GVLLTGYLD---NFKAMMHGNNISVEVDYMTPLNSSNYYE----SI 189
N + G YLD N M N + +E SN + S+
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 190 ILTIKGIDIKMERILTIFMTIDLSSNKFQ-GGIPEVVGKLNLLK-GLNISHNNLTGDIPS 247
L+++ + I++ I + + GI + L +LK N N DI +
Sbjct: 417 FLSLRNL---------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 248 SLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296
LRNLT LDLS L PT SL L VLN++ NQ + +P G
Sbjct: 468 ELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDG 512
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 225 VGKLNLLKGLNISHNNLTG-DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL 279
+G L LK LN++HN + +P NLT +E LDLSSN + T L L +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 41/160 (25%)
Query: 3 DLGIATLYYLDLS--------NNFL--TNIEY--FPPTNMTQLN-------------FDS 37
D G +L YLDLS +NFL +E+ F +N+ Q++ D
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 38 NLTH---------------KVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPP 81
+ TH +VL M N+F +P F + NLT L+L+ +LE P
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 82 SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
+ + L+VLN+ +NQ+ + L LQ + L +N
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 118/259 (45%), Gaps = 19/259 (7%)
Query: 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
N+T LNL N+L P + L +L+ G N I+ P +ILP L+VL L+ N
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDN---FKAMMHGNNISVEVDYMTPL 180
I + T V +L +DL N + + + K + N +S T +
Sbjct: 86 -SQISDQ-TFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS-STKLGTGV 142
Query: 181 NSSNYYESIILTIKGIDIKMERILTI----FMTIDLSSN---KFQGGIPEVVGKLNLLKG 233
N E ++ K + ++ E + + +DLSSN +F G + +GKL L
Sbjct: 143 QLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLL 202
Query: 234 LNISHN-NLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY--LSVLNLSYNQFE 290
N N +LT + L N T +++L L++N L+ + + LK+ L+ L+LSYN
Sbjct: 203 NNAQLNPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLH 261
Query: 291 GPIPRGSQFNTFPNDSYVG 309
+ GS F+ P+ Y+
Sbjct: 262 D-VGNGS-FSYLPSLRYLS 278
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 136/323 (42%), Gaps = 58/323 (17%)
Query: 6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKS 62
+ L L L +N +++I++ FP N+ L+F +N H + M R ++
Sbjct: 125 LENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDM--------RSLEQA 176
Query: 63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN------------------------Q 98
NL SLN NGN ++G + + + LN G
Sbjct: 177 INL-SLNFNGNNVKG-IELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFED 234
Query: 99 INDN--FPNWLEILPELQV--LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154
I+D L+ L E+ V L L+ +RF +TT F L+ +DL+ G L
Sbjct: 235 IDDEDISSAMLKGLCEMSVESLNLQEHRFSDI--SSTTFQCFTQLQELDLTATHLKG-LP 291
Query: 155 TGY--LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME------RILTI 206
+G L+ K ++ N D + ++++N+ L I+G K+ L
Sbjct: 292 SGMKGLNLLKKLVLSVN---HFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGN 348
Query: 207 FMTIDLSSNKFQGG--IPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNM 264
T+DLS N + + L+ L+ LN+SHN G + + ++E LDL+
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 265 LVGHIP-TQLTSLKYLSVLNLSY 286
L + P + +L +L VLNL+Y
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTY 431
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 88/219 (40%), Gaps = 45/219 (20%)
Query: 107 LEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY--------L 158
LE L LQ L L N + + L+ ++LSHNE G+ + L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 159 DNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILT---IFMTIDLSSN 215
D +H N +P + ++ + + LT +D + +L + ++L N
Sbjct: 403 DLAFTRLHIN------APQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGN 456
Query: 216 KFQGG------IPEVVGKLNLL---------------------KGLNISHNNLTGDIPSS 248
FQ G + + VG L +L +++SHN+LT D S
Sbjct: 457 HFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDS 516
Query: 249 LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 287
L +L + L+L++N + P L L S +NLS+N
Sbjct: 517 LSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 21/220 (9%)
Query: 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSCN 64
+ L LDLS+N +IE ++ QL NL+H + L++ N G + F +
Sbjct: 346 LGNLQTLDLSHN---DIEASDCCSL-QL---KNLSHLQTLNLSHNEPLGLQSQAFKECPQ 398
Query: 65 LTSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
L L+L RL P S N H L+VLN+ ++ + + L LP L+ L L+ N F
Sbjct: 399 LELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Query: 124 W-GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT--PL 180
G I + + SL ++ LS + LL+ F ++ +++ + + +T +
Sbjct: 459 QDGTITKTNLLQTVGSLEVLILS----SCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSI 514
Query: 181 NSSNYYESIILTIKG--IDIKMERILTIF---MTIDLSSN 215
+S ++ + I L + I+I R+L I TI+LS N
Sbjct: 515 DSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHN 554
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSNR 122
+T L+L+ NRL LPP+L LEVL +N + D N LP LQ L+L +NR
Sbjct: 465 VTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDGVAN----LPRLQELLLCNNR 519
Query: 123 FWGPIGENTTIVPF---PSLRIIDLSHNEFT 150
+ ++ I P P L +++L N
Sbjct: 520 ----LQQSAAIQPLVSCPRLVLLNLQGNSLC 546
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSNR 122
+T L+L+ NRL LPP+L LEVL +N + D N LP LQ L+L +NR
Sbjct: 465 VTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDGVAN----LPRLQELLLCNNR 519
Query: 123 FWGPIGENTTIVPF---PSLRIIDLSHNEFT 150
+ ++ I P P L +++L N
Sbjct: 520 ----LQQSAAIQPLVSCPRLVLLNLQGNSLC 546
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
G+ L Y+ +++ +T I P ++T+L+ D N KV + N N
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLN-----------N 217
Query: 65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
L L L+ N + SL N HL L++ NN++ P L +QV+ L +N
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNIS 276
Query: 125 GPIGENTTIVP 135
IG N P
Sbjct: 277 A-IGSNDFCPP 286
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
G+ L Y+ +++ +T I P ++T+L+ D N KV + N N
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLN-----------N 217
Query: 65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
L L L+ N + SL N HL L++ NN++ P L +QV+ L +N
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNIS 276
Query: 125 GPIGENTTIVP 135
IG N P
Sbjct: 277 A-IGSNDFCPP 286
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 32/204 (15%)
Query: 64 NLTSLNLNGNRLEGPLPPSLVN--CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
N+ + ++G R+ L PS ++ H L+ NN + D L EL+ LIL+ N
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLH----LDFSNNLLTDTVFENCGHLTELETLILQMN 358
Query: 122 RF--WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP 179
+ I E TT SL+ +D+S N + G K+++ N
Sbjct: 359 QLKELSKIAEMTT--QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM---------- 406
Query: 180 LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
SSN I IK+ +DL SNK + IP+ V KL L+ LN++ N
Sbjct: 407 --SSNILTDTIFRCLPPRIKV---------LDLHSNKIKS-IPKQVVKLEALQELNVASN 454
Query: 240 NLTGDIPSSLRNLTEVESLDLSSN 263
L LT ++ + L +N
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 231 LKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
L LN+S N LT I L ++ LDL SN + IP Q+ L+ L LN++ NQ +
Sbjct: 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLK 457
Query: 291 GPIPRG 296
+P G
Sbjct: 458 S-VPDG 462
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 228 LNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 287
L+ L+ L ISHN + S + E+E LDLS N LV +LK+ L+LS+N
Sbjct: 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKH---LDLSFN 100
Query: 288 QFEGPIPRGSQFNTFPNDSYVG 309
F+ +P +F ++G
Sbjct: 101 AFDA-LPICKEFGNMSQLKFLG 121
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 225 VGKLNLLKGLNISHNNLTG-DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL 279
+G L LK LN++HN + +P NLT +E LDLSSN + T L L +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 225 VGKLNLLKGLNISHNNLTG-DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL 279
+G L LK LN++HN + +P NLT +E LDLSSN + T L L +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 225 VGKLNLLKGLNISHNNLTG-DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL 279
+G L LK LN++HN + +P NLT +E LDLSSN + T L L +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 225 VGKLNLLKGLNISHNNLTG-DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL 279
+G L LK LN++HN + +P NLT +E LDLSSN + T L L +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 225 VGKLNLLKGLNISHNNLTG-DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL 279
+G L LK LN++HN + +P NLT +E LDLSSN + T L L +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 46/191 (24%)
Query: 3 DLGIATLYYLDL--------SNNF--LTNIEY--FPPTNMTQLN-------------FDS 37
D G +L YLDL S+NF L +E+ F +N+ Q++ D
Sbjct: 74 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133
Query: 38 NLTH---------------KVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPP 81
+ TH +VL M N+F +P F + NLT L+L+ +LE P
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
Query: 82 SLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL 139
+ + L+VLN+ +N D FP + L LQVL N + P SL
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSL 250
Query: 140 RIIDLSHNEFT 150
++L+ N+F
Sbjct: 251 AFLNLTQNDFA 261
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 220 GIPEVVGKLNLLK-GLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278
GI + L +LK N N DI + LRNLT LDLS L PT SL
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT---FLDLSQCQLEQLSPTAFNSLSS 200
Query: 279 LSVLNLSYNQF 289
L VLN+S+N F
Sbjct: 201 LQVLNMSHNNF 211
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI 269
+DLS + + P L+ L+ LN+SHNN + L ++ LD S N ++
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239
Query: 270 PTQLTSL-KYLSVLNLSYNQFEGPIPRGS 297
+L L+ LNL+ N F S
Sbjct: 240 KQELQHFPSSLAFLNLTQNDFACTCEHQS 268
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 139 LRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL-NSSNYYESIILTIKGID 197
L I+ S+N+ T + L ++ NN ++ +TPL N +N + + D
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNN---QIADITPLANLTNLTGLTLFNNQITD 121
Query: 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVES 257
I + LT ++LSSN I + G L L+ LN S N +T P L NLT +E
Sbjct: 122 IDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLER 177
Query: 258 LDLSSNMLVG-HIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296
LD+SSN + + +LT+L+ L N NQ P G
Sbjct: 178 LDISSNKVSDISVLAKLTNLESLIATN---NQISDITPLG 214
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 55/185 (29%)
Query: 110 LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL-DNFKAMMHGN 168
+P LQ+LIL NRF G+ T PSL + L N T D F+ + H
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTP-SENPSLEQLFLGENMLQLAWETELCWDVFEGLSH-- 481
Query: 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228
++V Y+ + NY S+ P V L
Sbjct: 482 ---LQVLYL----NHNYLNSL-------------------------------PPGVFSHL 503
Query: 229 NLLKGLNISHNNLT----GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL 284
L+GL+++ N LT D+P++L E LD+S N L+ P S LSVL++
Sbjct: 504 TALRGLSLNSNRLTVLSHNDLPANL------EILDISRNQLLAPNPDVFVS---LSVLDI 554
Query: 285 SYNQF 289
++N+F
Sbjct: 555 THNKF 559
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 17/79 (21%)
Query: 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG-------------PIGENTTIV 134
HL+VL + +N +N P L L+ L L SNR I N +
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLA 540
Query: 135 P----FPSLRIIDLSHNEF 149
P F SL ++D++HN+F
Sbjct: 541 PNPDVFVSLSVLDITHNKF 559
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 123/301 (40%), Gaps = 30/301 (9%)
Query: 4 LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
L +++ +LDLS+ F+ ++ + L KVL++ N N F
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDL--------KVLNLAYNKINKIADEAFYGLD 314
Query: 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
NL LNL+ N L + + +++ N I + L +LQ L LR N
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVE-VDYMTPLNS 182
TTI PS+ I LS N+ + N ++H + +E +D + L
Sbjct: 375 -------TTIHFIPSIPDIFLSGNKLVTLPKINLTAN---LIHLSENRLENLDILYFLLR 424
Query: 183 SNYYESIIL------TIKGIDIKME--RILTIFMTIDLSSNKFQGGIP-EVVGKLNLLKG 233
+ + +IL + G E + +F+ ++ ++ + +V L+ L+
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484
Query: 234 LNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPI 293
L ++HN L P +LT + L L+SN L L + L +L++S NQ P
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPN 542
Query: 294 P 294
P
Sbjct: 543 P 543
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 44 LDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF 103
L+++ N G P F + ++ L L N+++ + H L+ LN+ +NQI+
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 104 PNWLEILPELQVLILRSNRF 123
P E L L L L SN F
Sbjct: 119 PGSFEHLNSLTSLNLASNPF 138
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%)
Query: 224 VVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283
+ G+L L L + N LTG P++ + ++ L L N + L L LN
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 284 LSYNQFEGPIP 294
L NQ +P
Sbjct: 109 LYDNQISCVMP 119
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 123/296 (41%), Gaps = 53/296 (17%)
Query: 8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
TL L L +N +++I+ FP + L+F +N H + M++ ++ N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ--------QATN 181
Query: 65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
L SLNLNGN + G + P + + LN G Q N L I L+ ++S W
Sbjct: 182 L-SLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQ------NLLVIFKGLKNSTIQS--LW 231
Query: 125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSN 184
+ F + D+S F G+ M +I+++ Y ++S+
Sbjct: 232 --------LGTFEDMDDEDISPAVFEGL----------CEMSVESINLQKHYFFNISSNT 273
Query: 185 YYESIILTIKGIDIKMERI---------LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235
++ ++ +D+ + L+ + LS+NKF+ L L+
Sbjct: 274 FH--CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 236 ISHNNLTGDIPS-SLRNLTEVESLDLSSNMLVGH--IPTQLTSLKYLSVLNLSYNQ 288
I N ++ + L NL + LDLS + + QL +L +L LNLSYN+
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 32/278 (11%)
Query: 4 LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
+G++TL L LS N N+ ++ NF S LTH L ++ N ++ +++
Sbjct: 298 VGLSTLKKLVLSANKFENL-----CQISASNFPS-LTH--LSIKGNTKRLELGTGCLENL 349
Query: 64 -NLTSLNLNGNRLEGP--LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
NL L+L+ + +E L N HL+ LN+ N+ + P+L++L L
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409
Query: 121 NRFWGPIGENTTIVPFPSL---RIIDLSHNEFTGVLLTGYLDNFKAMMH----GNNISV- 172
R ++ PF +L ++++LSH+ + D A+ H GN+
Sbjct: 410 TRLKVKDAQS----PFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Query: 173 EVDYMTPLNSSNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229
+ L + E ++L+ + ID L + +DLS N+ E + L
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL- 523
Query: 230 LLKG--LNISHNNLTGDIPSSLRNLTEVESLDLSSNML 265
KG LN++ N+++ +PS L L++ +++L N L
Sbjct: 524 --KGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 126/319 (39%), Gaps = 50/319 (15%)
Query: 6 IATLYYLDLSNNFLTNI---EYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKS 62
+ L L L +N +++I E FP N+ L+F +N H + + K ++
Sbjct: 127 LENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYI--------SRKDTNSLEQA 178
Query: 63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ----INDNFPN------WLEILPE 112
NL SLN NGN ++G P + ++ + L G + I N WL +
Sbjct: 179 TNL-SLNFNGNDIKGIEPGAFIS-KIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFED 236
Query: 113 LQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISV 172
L S F G + + R DLS + F LD A ++G +
Sbjct: 237 TDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGI 296
Query: 173 E--------------VDYMTPLNSSNYYESIILTIKGIDIKME------RILTIFMTIDL 212
E D + +N++++ L IKG K++ L +DL
Sbjct: 297 EGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDL 356
Query: 213 SSNKFQGGIPEVVGKLNL--LKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML---VG 267
S + + + NL L+ LN+S+N G + + ++E LD++ L
Sbjct: 357 SHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAP 416
Query: 268 HIPTQLTSLKYLSVLNLSY 286
H P Q +L L VLNLS+
Sbjct: 417 HSPFQ--NLHLLRVLNLSH 433
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 234 LNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 287
L++SHN+LTGD +L +L + L+++SN + P L +L S++NLS+N
Sbjct: 504 LDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 27 PTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86
PT T L+ ++K L + IPR ++T L L+GN+ +P L N
Sbjct: 5 PTECTCLDTVVRCSNKGLKV----LPKGIPR------DVTELYLDGNQFTL-VPKELSNY 53
Query: 87 HHLEVLNVGNNQI----NDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRII 142
HL ++++ NN+I N +F N ++L LIL NR T SLR++
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLL----TLILSYNRLR--CIPPRTFDGLKSLRLL 107
Query: 143 DLSHNEFTGVLLTGYLDNFKAMMH 166
L N+ + V+ G ++ A+ H
Sbjct: 108 SLHGNDIS-VVPEGAFNDLSALSH 130
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 139 LRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL-NSSNYYESIILTIKGID 197
L I+ S+N+ T + L ++ NN ++ +TPL N +N + + D
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNN---QIADITPLANLTNLTGLTLFNNQITD 121
Query: 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVES 257
I + LT ++LSSN I + G L L+ L+ S N +T P L NLT +E
Sbjct: 122 IDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLER 177
Query: 258 LDLSSNMLVG-HIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296
LD+SSN + + +LT+L+ L N NQ P G
Sbjct: 178 LDISSNKVSDISVLAKLTNLESLIATN---NQISDITPLG 214
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 231 LKGLNISHNNL-------TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283
L+GL++SHN+L + D PS L SL+LS L +P L + LSVL+
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQL------NSLNLSFTGL-KQVPKGLPA--KLSVLD 280
Query: 284 LSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLES 321
LSYN+ + R + P VGN L G P L+S
Sbjct: 281 LSYNRLD----RNPSPDELPQ---VGNLSLKGNPFLDS 311
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 139 LRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL-NSSNYYESIILTIKGID 197
L I+ S+N+ T + L ++ NN ++ +TPL N +N + + D
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNN---QIADITPLANLTNLTGLTLFNNQITD 121
Query: 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVES 257
I + LT ++LSSN I + G L L+ L+ S N +T P L NLT +E
Sbjct: 122 IDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLER 177
Query: 258 LDLSSNMLVG-HIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296
LD+SSN + + +LT+L+ L N NQ P G
Sbjct: 178 LDISSNKVSDISVLAKLTNLESLIATN---NQISDITPLG 214
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 234 LNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPI 293
LN+S N LTG + L +V+ LDL +N ++ IP +T L+ L LN++ NQ + +
Sbjct: 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-V 488
Query: 294 PRG 296
P G
Sbjct: 489 PDG 491
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 16/80 (20%)
Query: 208 MTIDLSSNKFQGGI----PEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSN 263
+ ++LSSN G + P V L+L HNN IP + +L ++ L+++SN
Sbjct: 431 LVLNLSSNMLTGSVFRCLPPKVKVLDL-------HNNRIMSIPKDVTHLQALQELNVASN 483
Query: 264 MLVGHIP----TQLTSLKYL 279
L +P +LTSL+Y+
Sbjct: 484 QLKS-VPDGVFDRLTSLQYI 502
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 114/276 (41%), Gaps = 58/276 (21%)
Query: 68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF-WGP 126
L+L NR++ + HLE L + N ++ P L L+ L LRSNR P
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLD--NFKAMMHGNNISVEVDY--MTPLNS 182
+G T + +L +D+S N+ +L + D N K++ G+N V + + + LNS
Sbjct: 97 LGVFTGL---SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Query: 183 -------------------SNYYESIILTIKGIDIKMER-----ILTIFMTIDLSSNKFQ 218
S+ + I+L ++ ++I R L +++S +
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 219 GGI-PEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSN-------------- 263
+ P + LN L L+I+H NLT ++R+L + L+LS N
Sbjct: 214 DTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272
Query: 264 -----MLVGHI-----PTQLTSLKYLSVLNLSYNQF 289
LVG P L YL VLN+S NQ
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
>pdb|2FL4|A Chain A, The Crystal Structure Of The SpermineSPERMIDINE
ACETYLTRANSFERASE From Enterococcus Faecalis
Length = 149
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 19/79 (24%)
Query: 316 FPLLESCNIDEAPEPVGSTRFDEEEDASSWFD-----WKFAKMGYGSGLVIGLSVGYMVF 370
FP ES I + + +G + +D W D +F GYG L
Sbjct: 43 FPEWESAGIYDGNQLIGYAMYGRWQDGRVWLDRFLIDQRFQGQGYGKAACRLL------- 95
Query: 371 GTGKPRWLVRMIEKYQSNK 389
++++IEKYQ+NK
Sbjct: 96 -------MLKLIEKYQTNK 107
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 225 VGKLNLLKGLNISHNNL-TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283
+G+L LK LN++HN + + +P+ NLT + +DLS N + L L+ +N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183
Query: 284 LSYNQFEGPI 293
LS + PI
Sbjct: 184 LSLDMSLNPI 193
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 225 VGKLNLLKGLNISHNNL-TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283
+G+L LK LN++HN + + +P+ NLT + +DLS N + L L+ +N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 178
Query: 284 LSYNQFEGPI 293
LS + PI
Sbjct: 179 LSLDMSLNPI 188
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 197 DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVE 256
DI + LT + L+ N+ Q V KL LK L + N L LT +
Sbjct: 77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 257 SLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296
L+L+ N L L L+ L+LSYNQ + +P G
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEG 175
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 7/143 (4%)
Query: 157 YLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILT---IKGIDIKMERILTIFMTIDLS 213
YL N + + G N ++ + L + Y +ILT ++ + + LT + L
Sbjct: 61 YLPNVRYLALGGNKLHDISALKELTNLTY---LILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 214 SNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQL 273
N+ Q V KL L LN++HN L LT + LDLS N L
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 274 TSLKYLSVLNLSYNQFEGPIPRG 296
L L L L NQ + +P G
Sbjct: 178 DKLTQLKDLRLYQNQLKS-VPDG 199
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268
++D+ N PE+ KL +LK LN+ HN L+ + T + L L SN +
Sbjct: 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112
Query: 269 IPTQLTSLKYLSVLNLSYN 287
K L L+LS+N
Sbjct: 113 KNNPFVKQKNLITLDLSHN 131
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 128/315 (40%), Gaps = 56/315 (17%)
Query: 13 DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNLTSLNLN 71
D S+ LT + PTN+T LN LTH L ++P F + LTSL++
Sbjct: 10 DCSHLKLTQVPDDLPTNITVLN----LTHNQLR--------RLPAANFTRYSQLTSLDVG 57
Query: 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
N + P L+VLN+ +N+++ L L L SN +N
Sbjct: 58 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI--KNN 115
Query: 132 TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL 191
V +L +DLSHN + L G + +E L S+N ++ L
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKL------------GTQVQLENLQEL-LLSNNKIQA--L 160
Query: 192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH----NNLTGDIPS 247
+ +DI L ++LSSN+ + P + L GL +++ +LT +
Sbjct: 161 KSEELDIFANSSLK---KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217
Query: 248 SLRNLTEVESLDLSSNMLVGHIPTQLTSLKY--LSVLNLSYNQFEGPIPRGSQFNTFPND 305
L N T + +L LS++ L T LK+ L++L+LSYN N
Sbjct: 218 ELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN----------------NL 260
Query: 306 SYVGNSGLCGFPLLE 320
+ VGN P LE
Sbjct: 261 NVVGNDSFAWLPQLE 275
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268
++D+ N PE+ KL +LK LN+ HN L+ + T + L L SN +
Sbjct: 58 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 117
Query: 269 IPTQLTSLKYLSVLNLSYN 287
K L L+LS+N
Sbjct: 118 KNNPFVKQKNLITLDLSHN 136
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 128/315 (40%), Gaps = 56/315 (17%)
Query: 13 DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNLTSLNLN 71
D S+ LT + PTN+T LN LTH L ++P F + LTSL++
Sbjct: 15 DCSHLKLTQVPDDLPTNITVLN----LTHNQLR--------RLPAANFTRYSQLTSLDVG 62
Query: 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
N + P L+VLN+ +N+++ L L L SN +N
Sbjct: 63 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI--KNN 120
Query: 132 TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL 191
V +L +DLSHN + L G + +E L S+N ++ L
Sbjct: 121 PFVKQKNLITLDLSHNGLSSTKL------------GTQVQLENLQEL-LLSNNKIQA--L 165
Query: 192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH----NNLTGDIPS 247
+ +DI L ++LSSN+ + P + L GL +++ +LT +
Sbjct: 166 KSEELDIFANSSLK---KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 222
Query: 248 SLRNLTEVESLDLSSNMLVGHIPTQLTSLKY--LSVLNLSYNQFEGPIPRGSQFNTFPND 305
L N T + +L LS++ L T LK+ L++L+LSYN N
Sbjct: 223 ELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN----------------NL 265
Query: 306 SYVGNSGLCGFPLLE 320
+ VGN P LE
Sbjct: 266 NVVGNDSFAWLPQLE 280
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268
++D+ N PE+ KL +LK LN+ HN L+ + T + L L SN +
Sbjct: 63 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 122
Query: 269 IPTQLTSLKYLSVLNLSYN 287
K L L+LS+N
Sbjct: 123 KNNPFVKQKNLITLDLSHN 141
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 128/315 (40%), Gaps = 56/315 (17%)
Query: 13 DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNLTSLNLN 71
D S+ LT + PTN+T LN LTH L ++P F + LTSL++
Sbjct: 20 DCSHLKLTQVPDDLPTNITVLN----LTHNQLR--------RLPAANFTRYSQLTSLDVG 67
Query: 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
N + P L+VLN+ +N+++ L L L SN +N
Sbjct: 68 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI--KNN 125
Query: 132 TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL 191
V +L +DLSHN + L G + +E L S+N ++ L
Sbjct: 126 PFVKQKNLITLDLSHNGLSSTKL------------GTQVQLENLQEL-LLSNNKIQA--L 170
Query: 192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH----NNLTGDIPS 247
+ +DI L ++LSSN+ + P + L GL +++ +LT +
Sbjct: 171 KSEELDIFANSSLK---KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 227
Query: 248 SLRNLTEVESLDLSSNMLVGHIPTQLTSLKY--LSVLNLSYNQFEGPIPRGSQFNTFPND 305
L N T + +L LS++ L T LK+ L++L+LSYN N
Sbjct: 228 ELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN----------------NL 270
Query: 306 SYVGNSGLCGFPLLE 320
+ VGN P LE
Sbjct: 271 NVVGNDSFAWLPQLE 285
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 225 VGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTS---LKYL 279
+ K + L L ++ N+LT ++P+ ++NL+ + LDLS N L +P +L S LKY
Sbjct: 243 IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYF 298
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 229 NLLKGLNISHNNLTG----DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL 284
+L K L H T + R LT V + NM G++P + + + ++
Sbjct: 301 SLEKHLQTMHGTTTHFDKIGLEEEFRKLTNVRIM--KENMRTGNLPANMKKARVIQIIPY 358
Query: 285 SYNQFEGPIPRGSQFNTFPNDSYV 308
+N+ + RG ++ + N S++
Sbjct: 359 DFNRVILSMKRGQEYTDYINASFI 382
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%)
Query: 210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI 269
I L+SN+ + ++ L LK L + N +T S L+ V L L N +
Sbjct: 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145
Query: 270 PTQLTSLKYLSVLNLSYNQF 289
P +L LS LNL N F
Sbjct: 146 PGAFDTLHSLSTLNLLANPF 165
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 49 NNFNGKIPRKFVKSCNLTSLNLNGNRLEG-----PLPPSLVNCHHLEVLNVGNNQINDNF 103
N +G + K NLT LNL+GN+++ PL L N L++ N +ND
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL-KKLENLKSLDLFNCEVTNLNDYR 132
Query: 104 PNWLEILPELQVL 116
N ++LP+L L
Sbjct: 133 ENVFKLLPQLTYL 145
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 79 LPPSLVNCH--HLEVLNVGNNQINDNF---PNWLEILPELQVLILRSNRFWGPIGENTTI 133
L P L++ H LE L++ N + + + + P LQ LILR N T+
Sbjct: 324 LVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETL 383
Query: 134 VPFPSLRIIDLSHNEF 149
+ +L ID+S N F
Sbjct: 384 LTLKNLTNIDISKNSF 399
>pdb|4IFD|G Chain G, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 242
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 104 PNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163
PN EI P ++ S + G G T + + S R I ++ GV++ + D++K
Sbjct: 31 PNTQEIRPVNTGVLHVSAK--GKSGVQTAYIDYSSKRYIPSVNDFVIGVIIGTFSDSYKV 88
Query: 164 MMHGNNISVEVDYMTPLNSSN 184
+ + SV + YM N+S
Sbjct: 89 SLQNFSSSVSLSYMAFPNASK 109
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 60/253 (23%)
Query: 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF-WGPIGENT 131
N+LEG LP + + L LN+ NQI + N+ +++ L N+ + P +
Sbjct: 340 NQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398
Query: 132 TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL 191
V S ID S+NE V G N PL+ + +
Sbjct: 399 KSVSVXS--AIDFSYNEIGSV-------------DGKNFD-------PLDPTPF------ 430
Query: 192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRN 251
KGI++ +I+LS+N+ E+ + L +N+ N LT +SL++
Sbjct: 431 --KGINVS---------SINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKD 479
Query: 252 LTE-------VESLDLSSNMLVG-HIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFP 303
E + S+DL N L + T+L YL ++LSYN F S+F T P
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-------SKFPTQP 532
Query: 304 NDSYVGNSGLCGF 316
+ +S L GF
Sbjct: 533 ----LNSSTLKGF 541
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 97/238 (40%), Gaps = 62/238 (26%)
Query: 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN----------------DNFPNWL 107
N LNL N ++ + + HHLEVL +G N I + F NWL
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 108 EILP--------ELQVLILRSNRFWGPIGENTTIVPF---PSLRIIDL---------SHN 147
++P +L+ L LR+N PI E+ F PSL +DL S
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNN----PI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190
Query: 148 EFTGVLLTGYLD----NFKAMMHGNNISVEVDYMTPLNSSNYYESIIL-TIKGIDIKMER 202
F G+ YL+ N K M N++ V S N++ I + G+ +++
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDM---PNLTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKK 246
Query: 203 ILTIFMTIDL-SSNKFQGGIPEVVGKLNLLKGLNISHNNLTG---DIPSSLRNLTEVE 256
+ + + L N F G L L LN++HNNL+ D+ + LR L E+
Sbjct: 247 LWVMNSQVSLIERNAFDG--------LASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 130/345 (37%), Gaps = 88/345 (25%)
Query: 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
L YL +N LTN++ P T +T LN D+N K LD+ N LT L
Sbjct: 87 LTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK-LDVSQNPL-------------LTYL 132
Query: 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
N N L + ++ H L + +N L++ P+ Q+ L
Sbjct: 133 NCARNTL------TEIDVSHNTQLTELDCHLNKKITK-LDVTPQTQLTTLD--------- 176
Query: 129 ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISV-----------EVDYM 177
F + +D+S N+ L +N + NI + E+D +
Sbjct: 177 -----CSFNKITELDVSQNKLLN-RLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-V 229
Query: 178 TPLNSSNYYESIILTIKGIDIK-------MERILTIFMTIDLSSNK----FQGGIPEVVG 226
TPL Y++ + + +D+ + I T + IDL+ N FQ E
Sbjct: 230 TPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA---EGCR 286
Query: 227 KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI---PTQL--------TS 275
K +K L+++HN + +TE LDLS N + ++ T+L T
Sbjct: 287 K---IKELDVTHNTQLYLLDCQAAGITE---LDLSQNPKLVYLYLNNTELTELDVSHNTK 340
Query: 276 LKYLSVLNLSYNQFE--GPIP-------RGSQFNTFPNDSYVGNS 311
LK LS +N F G IP Q T P ++ NS
Sbjct: 341 LKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNS 385
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,985,807
Number of Sequences: 62578
Number of extensions: 569881
Number of successful extensions: 1652
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1190
Number of HSP's gapped (non-prelim): 331
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)