Query 013403
Match_columns 443
No_of_seqs 354 out of 4173
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:30:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.1E-35 4.5E-40 325.3 22.0 310 5-317 258-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 8.8E-32 1.9E-36 296.6 21.7 309 5-317 234-588 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.2E-28 2.6E-33 237.7 1.0 303 5-311 100-427 (873)
4 KOG4194 Membrane glycoprotein 99.9 2E-28 4.3E-33 236.1 2.3 307 7-316 125-455 (873)
5 KOG0444 Cytoskeletal regulator 99.9 4.5E-25 9.7E-30 214.5 -1.9 286 5-319 76-381 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 4.3E-25 9.3E-30 214.6 -5.8 245 26-296 53-311 (1255)
7 KOG0472 Leucine-rich repeat pr 99.8 2.1E-23 4.6E-28 193.6 -6.9 111 199-312 429-540 (565)
8 KOG4237 Extracellular matrix p 99.8 4.9E-23 1.1E-27 190.9 -4.8 273 8-290 68-359 (498)
9 KOG0472 Leucine-rich repeat pr 99.8 2.1E-23 4.5E-28 193.7 -10.2 263 8-312 46-309 (565)
10 PRK15387 E3 ubiquitin-protein 99.8 7.5E-20 1.6E-24 190.5 14.7 234 7-296 222-464 (788)
11 PRK15370 E3 ubiquitin-protein 99.8 2.6E-19 5.6E-24 187.4 12.1 237 7-290 178-428 (754)
12 PRK15370 E3 ubiquitin-protein 99.8 4.4E-19 9.4E-24 185.7 12.9 219 28-296 178-406 (754)
13 PLN03210 Resistant to P. syrin 99.8 5.7E-18 1.2E-22 188.3 21.5 271 5-286 556-878 (1153)
14 PRK15387 E3 ubiquitin-protein 99.8 2.1E-18 4.5E-23 179.7 16.0 247 7-312 201-457 (788)
15 KOG0618 Serine/threonine phosp 99.8 1.6E-20 3.4E-25 190.7 -2.2 279 5-312 197-488 (1081)
16 KOG4237 Extracellular matrix p 99.8 2.7E-20 5.8E-25 172.8 -3.3 234 5-266 89-359 (498)
17 PLN03210 Resistant to P. syrin 99.8 3.1E-17 6.8E-22 182.5 20.2 239 25-295 555-843 (1153)
18 KOG0618 Serine/threonine phosp 99.7 2.5E-19 5.4E-24 182.1 -1.5 275 7-310 177-462 (1081)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.2E-18 2.5E-23 168.2 2.4 87 204-290 192-291 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.3E-18 4.9E-23 166.2 1.4 236 39-289 51-319 (319)
21 KOG0617 Ras suppressor protein 99.7 1.6E-18 3.5E-23 143.8 -3.6 157 59-266 29-186 (264)
22 PLN03150 hypothetical protein; 99.6 1E-15 2.2E-20 159.6 11.9 118 206-323 419-538 (623)
23 KOG0617 Ras suppressor protein 99.6 1.2E-17 2.7E-22 138.6 -5.6 161 39-251 33-194 (264)
24 COG4886 Leucine-rich repeat (L 99.3 3.4E-12 7.4E-17 127.0 7.1 199 43-296 97-296 (394)
25 KOG0532 Leucine-rich repeat (L 99.2 6.6E-13 1.4E-17 129.3 -2.5 170 42-266 78-247 (722)
26 PLN03150 hypothetical protein; 99.2 2.8E-11 6.2E-16 126.4 8.7 108 41-150 420-528 (623)
27 COG4886 Leucine-rich repeat (L 99.2 2.8E-11 6.2E-16 120.3 6.9 182 39-274 116-298 (394)
28 KOG3207 Beta-tubulin folding c 99.1 2.2E-11 4.8E-16 115.4 2.4 208 61-290 119-339 (505)
29 KOG1909 Ran GTPase-activating 99.1 4.1E-12 8.9E-17 117.2 -2.5 238 5-290 28-311 (382)
30 PF14580 LRR_9: Leucine-rich r 99.1 2.1E-10 4.6E-15 99.1 6.3 107 40-152 20-128 (175)
31 KOG0532 Leucine-rich repeat (L 99.1 2.7E-12 5.9E-17 125.1 -6.1 192 6-263 74-270 (722)
32 KOG1259 Nischarin, modulator o 99.0 4.3E-11 9.3E-16 108.4 0.2 88 204-295 328-416 (490)
33 PF14580 LRR_9: Leucine-rich r 99.0 1E-10 2.2E-15 101.2 2.1 126 5-144 17-147 (175)
34 KOG3207 Beta-tubulin folding c 99.0 9.6E-11 2.1E-15 111.2 0.6 134 5-151 119-260 (505)
35 KOG1259 Nischarin, modulator o 99.0 1E-10 2.2E-15 106.0 -0.3 120 25-150 211-365 (490)
36 KOG1909 Ran GTPase-activating 98.9 7.5E-11 1.6E-15 109.0 -2.6 146 4-153 89-257 (382)
37 PF13855 LRR_8: Leucine rich r 98.9 6.9E-10 1.5E-14 79.0 2.7 60 40-99 2-61 (61)
38 PF13855 LRR_8: Leucine rich r 98.9 9.1E-10 2E-14 78.4 2.0 59 230-288 2-60 (61)
39 KOG0531 Protein phosphatase 1, 98.8 1.5E-09 3.2E-14 108.5 2.3 103 42-152 75-177 (414)
40 KOG0531 Protein phosphatase 1, 98.8 5.7E-10 1.2E-14 111.5 -0.8 194 39-290 95-290 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.7 1.6E-08 3.4E-13 108.6 6.9 88 204-292 716-809 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.6 2.6E-08 5.6E-13 106.9 4.1 236 39-295 545-789 (889)
43 KOG2120 SCF ubiquitin ligase, 98.3 8.2E-09 1.8E-13 93.7 -7.1 82 204-287 285-373 (419)
44 KOG1859 Leucine-rich repeat pr 98.3 4.2E-08 9E-13 98.9 -4.6 106 203-314 185-293 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.2 3.1E-08 6.7E-13 90.1 -5.2 62 202-265 310-375 (419)
46 KOG2982 Uncharacterized conser 98.2 1.3E-06 2.8E-11 79.7 4.2 223 42-285 48-287 (418)
47 KOG4579 Leucine-rich repeat (L 98.2 1.1E-07 2.5E-12 76.8 -2.3 111 205-323 53-163 (177)
48 KOG1859 Leucine-rich repeat pr 98.1 2E-07 4.3E-12 94.1 -2.8 104 40-151 165-268 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.1 2.3E-06 5.1E-11 77.1 3.5 111 40-151 31-171 (388)
50 PF12799 LRR_4: Leucine Rich r 98.0 5.2E-06 1.1E-10 54.3 2.9 35 65-100 3-37 (44)
51 KOG2982 Uncharacterized conser 98.0 7.1E-06 1.5E-10 75.0 4.5 219 58-294 40-266 (418)
52 PF12799 LRR_4: Leucine Rich r 98.0 8.3E-06 1.8E-10 53.3 3.3 37 39-76 1-37 (44)
53 COG5238 RNA1 Ran GTPase-activa 97.9 5.5E-06 1.2E-10 74.8 2.8 95 59-153 26-136 (388)
54 KOG4579 Leucine-rich repeat (L 97.8 8.6E-07 1.9E-11 71.8 -3.4 104 42-151 30-137 (177)
55 PRK15386 type III secretion pr 97.8 9.3E-05 2E-09 72.2 9.3 28 375-402 380-409 (426)
56 KOG3665 ZYG-1-like serine/thre 97.7 1.8E-05 3.8E-10 83.3 3.3 118 39-158 148-271 (699)
57 KOG1644 U2-associated snRNP A' 97.6 8.2E-05 1.8E-09 64.5 5.3 107 40-148 43-151 (233)
58 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.3E-09 63.8 5.2 84 64-150 43-126 (233)
59 KOG3665 ZYG-1-like serine/thre 97.5 6.1E-05 1.3E-09 79.3 3.7 118 7-126 122-265 (699)
60 PRK15386 type III secretion pr 97.4 0.00049 1.1E-08 67.3 7.9 121 5-147 50-187 (426)
61 KOG2739 Leucine-rich acidic nu 97.0 0.0005 1.1E-08 62.1 2.6 101 42-144 46-150 (260)
62 KOG2739 Leucine-rich acidic nu 96.7 0.0013 2.9E-08 59.5 3.1 94 55-151 35-130 (260)
63 PF13306 LRR_5: Leucine rich r 96.5 0.0091 2E-07 48.9 6.6 101 39-146 12-112 (129)
64 PF13306 LRR_5: Leucine rich r 96.2 0.007 1.5E-07 49.6 4.6 103 5-120 10-112 (129)
65 KOG2123 Uncharacterized conser 96.1 0.00033 7.1E-09 63.8 -4.3 97 42-143 22-123 (388)
66 KOG4341 F-box protein containi 96.0 0.00021 4.6E-09 68.4 -6.3 65 9-73 140-226 (483)
67 PF00560 LRR_1: Leucine Rich R 95.9 0.0037 8E-08 34.0 0.9 19 41-60 2-20 (22)
68 KOG2123 Uncharacterized conser 95.8 0.00065 1.4E-08 61.9 -3.7 87 62-153 18-104 (388)
69 PF00560 LRR_1: Leucine Rich R 95.4 0.0049 1.1E-07 33.5 0.3 21 64-85 1-21 (22)
70 KOG4341 F-box protein containi 94.5 0.0037 8.1E-08 60.2 -2.9 94 28-121 138-252 (483)
71 KOG4308 LRR-containing protein 94.0 0.00023 5E-09 71.8 -12.9 110 41-150 89-217 (478)
72 KOG4308 LRR-containing protein 93.6 0.00044 9.5E-09 69.8 -11.8 86 65-150 89-185 (478)
73 KOG0473 Leucine-rich repeat pr 93.6 0.0013 2.9E-08 58.4 -7.2 78 42-122 45-122 (326)
74 PF13504 LRR_7: Leucine rich r 92.1 0.096 2.1E-06 26.4 1.3 13 8-20 2-14 (17)
75 KOG1947 Leucine rich repeat pr 91.0 0.035 7.6E-07 56.4 -2.0 111 39-150 188-308 (482)
76 KOG0473 Leucine-rich repeat pr 89.7 0.0077 1.7E-07 53.7 -6.9 89 57-150 36-124 (326)
77 smart00369 LRR_TYP Leucine-ric 89.6 0.34 7.3E-06 27.3 2.2 15 87-101 2-16 (26)
78 smart00370 LRR Leucine-rich re 89.6 0.34 7.3E-06 27.3 2.2 15 87-101 2-16 (26)
79 smart00369 LRR_TYP Leucine-ric 88.1 0.43 9.3E-06 26.8 1.9 14 63-76 2-15 (26)
80 smart00370 LRR Leucine-rich re 88.1 0.43 9.3E-06 26.8 1.9 14 63-76 2-15 (26)
81 KOG3864 Uncharacterized conser 84.0 0.15 3.2E-06 44.7 -2.0 81 8-96 102-185 (221)
82 PF13516 LRR_6: Leucine Rich r 82.9 0.22 4.9E-06 27.4 -1.0 14 87-100 2-15 (24)
83 KOG4242 Predicted myosin-I-bin 81.4 5.8 0.00013 39.5 7.4 93 7-99 165-280 (553)
84 smart00364 LRR_BAC Leucine-ric 77.1 1.7 3.8E-05 24.5 1.4 18 277-295 2-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 76.4 2.1 4.6E-05 24.2 1.7 14 7-20 2-15 (26)
86 KOG1947 Leucine rich repeat pr 75.6 1.6 3.5E-05 44.2 1.9 85 39-123 214-307 (482)
87 KOG3864 Uncharacterized conser 71.2 1.3 2.8E-05 39.0 -0.0 89 79-168 93-182 (221)
88 smart00368 LRR_RI Leucine rich 70.6 3.5 7.6E-05 23.6 1.7 12 41-52 4-15 (28)
89 PF04478 Mid2: Mid2 like cell 47.7 8.3 0.00018 32.2 0.8 6 353-358 52-57 (154)
90 TIGR00864 PCC polycystin catio 46.1 14 0.0003 45.0 2.5 33 235-267 1-33 (2740)
91 PF15176 LRR19-TM: Leucine-ric 45.8 13 0.00029 28.5 1.5 21 369-389 35-55 (102)
92 KOG3763 mRNA export factor TAP 42.4 12 0.00025 38.2 1.0 35 205-239 218-254 (585)
93 KOG3763 mRNA export factor TAP 40.6 14 0.00031 37.6 1.3 65 5-77 216-284 (585)
94 PF14991 MLANA: Protein melan- 38.4 10 0.00022 29.8 -0.1 32 353-384 27-59 (118)
95 PF13908 Shisa: Wnt and FGF in 36.9 45 0.00097 29.0 3.8 11 312-322 28-38 (179)
96 TIGR00864 PCC polycystin catio 30.6 31 0.00067 42.3 2.1 30 46-75 2-31 (2740)
97 PF01034 Syndecan: Syndecan do 30.3 17 0.00037 25.5 0.0 10 353-362 12-21 (64)
98 smart00367 LRR_CC Leucine-rich 29.3 37 0.00081 18.7 1.3 9 41-49 4-12 (26)
99 PF08374 Protocadherin: Protoc 25.8 62 0.0013 28.8 2.6 21 348-368 36-56 (221)
100 PF06295 DUF1043: Protein of u 25.0 32 0.00069 28.1 0.7 16 356-371 3-18 (128)
101 PF11770 GAPT: GRB2-binding ad 24.9 24 0.00052 29.3 -0.0 13 378-390 43-55 (158)
102 PF03672 UPF0154: Uncharacteri 23.8 38 0.00082 23.9 0.8 16 355-370 3-18 (64)
103 PF01102 Glycophorin_A: Glycop 22.5 17 0.00038 29.3 -1.2 12 353-364 67-78 (122)
104 PF08114 PMP1_2: ATPase proteo 22.3 1.4E+02 0.0029 18.9 2.9 6 375-380 31-36 (43)
105 COG3105 Uncharacterized protei 21.5 45 0.00098 27.0 0.9 20 355-374 11-30 (138)
106 PF04478 Mid2: Mid2 like cell 20.6 32 0.0007 28.8 -0.1 25 347-371 50-74 (154)
107 PF11980 DUF3481: Domain of un 20.5 32 0.00069 25.5 -0.1 18 348-365 16-33 (87)
108 PF14986 DUF4514: Domain of un 20.2 76 0.0016 21.2 1.6 23 343-365 15-37 (61)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.1e-35 Score=325.34 Aligned_cols=310 Identities=30% Similarity=0.435 Sum_probs=212.3
Q ss_pred CCCCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEE
Q 013403 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L 68 (443)
++++|++|++++|.+++..| ..+.+|+.|++++| ++|++|++++|.+++.+|..+.++++|++|
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 45667777777777766655 44566666666666 466666666666666666666666666666
Q ss_pred EccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCc
Q 013403 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (443)
Q Consensus 69 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~ 148 (443)
++++|.+++.+|..++.+++|+.|++++|.+++.+|.++..+++|+.|++++|++.+.+|..+ ..+++|+.|++++|+
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNS 415 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcCCE
Confidence 666666666666666666666666666666666566655555555555555555555555443 445555555555555
Q ss_pred cccccchhhHHhHhhhhccCCCcccc---------------------cccC-CCC---CCCcceeEEEEec---cchhhh
Q 013403 149 FTGVLLTGYLDNFKAMMHGNNISVEV---------------------DYMT-PLN---SSNYYESIILTIK---GIDIKM 200 (443)
Q Consensus 149 l~~~~~~~~~~~l~~L~~~~~~~~~~---------------------~~~~-~~~---~~~~~~~~~~~~~---~~~~~~ 200 (443)
+++..|.. +..++.+..++...... +.+. ..+ ....+..+....+ +..+..
T Consensus 416 l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~ 494 (968)
T PLN00113 416 FSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK 494 (968)
T ss_pred eeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChh
Confidence 55444432 23333333222211100 0000 000 0011122222222 222333
Q ss_pred HhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCC
Q 013403 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS 280 (443)
Q Consensus 201 ~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 280 (443)
+..+++|+.|++++|++.+.+|..+..+++|++|++++|.+++.+|..++++++|++|||++|++++.+|..+..+++|+
T Consensus 495 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 574 (968)
T PLN00113 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574 (968)
T ss_pred hhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeCcCCcCcCCCCCCCCCCCcCCCccCCCCCCCCCC
Q 013403 281 VLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFP 317 (443)
Q Consensus 281 ~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~p 317 (443)
.+++++|+++|.+|...++.++...++.||+.+||.+
T Consensus 575 ~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 575 QVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred EEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.98 E-value=8.8e-32 Score=296.60 Aligned_cols=309 Identities=28% Similarity=0.350 Sum_probs=252.5
Q ss_pred CCCCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEE
Q 013403 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L 68 (443)
++++|++|++++|.+++..| ..+++|+.|++++| ++|++|++++|++++.+|..+.++++|++|
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence 67899999999999998887 67889999999998 689999999999999999999999999999
Q ss_pred EccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCc
Q 013403 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (443)
Q Consensus 69 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~ 148 (443)
++++|.+++.+|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+ ..+++|+.|++++|+
T Consensus 314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFSNS 391 (968)
T ss_pred ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH--hCcCCCCEEECcCCE
Confidence 999999999999999999999999999999999999999999999999999999999888776 788999999999999
Q ss_pred cccccchhhHHhHhhhhccCCCccccc-----ccCCCCCCC---------------------cceeEEEEeccch---hh
Q 013403 149 FTGVLLTGYLDNFKAMMHGNNISVEVD-----YMTPLNSSN---------------------YYESIILTIKGID---IK 199 (443)
Q Consensus 149 l~~~~~~~~~~~l~~L~~~~~~~~~~~-----~~~~~~~~~---------------------~~~~~~~~~~~~~---~~ 199 (443)
+.+..|.. +..++.|+.+........ .+....... .+..+....+.+. +.
T Consensus 392 l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 392 LEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred ecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence 99888765 556666665544222111 011111000 0111111111111 11
Q ss_pred hHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCC
Q 013403 200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL 279 (443)
Q Consensus 200 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 279 (443)
.. ..++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..++++++|++|++++|.+++.+|..+..+++|
T Consensus 471 ~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 549 (968)
T PLN00113 471 SF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549 (968)
T ss_pred cc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccC
Confidence 11 14678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeCcCCcCcCCCCCCC-CCCCcCCCccCCCCCCCCCC
Q 013403 280 SVLNLSYNQFEGPIPRGS-QFNTFPNDSYVGNSGLCGFP 317 (443)
Q Consensus 280 ~~L~Ls~N~l~g~iP~~~-~~~~~~~~~~~gn~~lcg~p 317 (443)
+.||+++|+++|.+|... .+..+......+|...+..|
T Consensus 550 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 999999999999999763 34455666677776555333
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-28 Score=237.65 Aligned_cols=303 Identities=24% Similarity=0.280 Sum_probs=172.5
Q ss_pred CCCCccEEeccCCCCCCcCC--CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEE
Q 013403 5 GIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~ 69 (443)
++++|+.++|.+|.++.++. ....+++.|+|.+| +.|+.||||.|.|+...-.+|..-.++++|+
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 45555555555555555443 33445666666666 5666666666666643334555555667777
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCcc
Q 013403 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (443)
Q Consensus 70 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l 149 (443)
|++|.++..-.+.|.++.+|.+|.|+.|+++...+..|..|++|+.|+|..|++. +.+..+|.++++|+.|.|..|++
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir--ive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR--IVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee--eehhhhhcCchhhhhhhhhhcCc
Confidence 7777766555566666667777777777776655556666777777777777662 22333456667777777777766
Q ss_pred ccccchhhHHhHhhhhccCCCccccc-----ccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchh
Q 013403 150 TGVLLTGYLDNFKAMMHGNNISVEVD-----YMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV 224 (443)
Q Consensus 150 ~~~~~~~~~~~l~~L~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~ 224 (443)
+...... |-.+.+|..+++...... ++-.+.....+......+..+....+...++|++|||++|+++...+..
T Consensus 258 ~kL~DG~-Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s 336 (873)
T KOG4194|consen 258 SKLDDGA-FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS 336 (873)
T ss_pred ccccCcc-eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhH
Confidence 6443332 334444444443221111 1111111111111122222333333444566777777777777666666
Q ss_pred cCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcc---cccCCCCCCeEeCcCCcCcCCCCCCC--CC
Q 013403 225 VGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPT---QLTSLKYLSVLNLSYNQFEGPIPRGS--QF 299 (443)
Q Consensus 225 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~g~iP~~~--~~ 299 (443)
|..+..|++|+|++|.++..--..|.++++|+.|||++|.++..+.+ .|..+++|+.|++.+|++. .||... .+
T Consensus 337 f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl 415 (873)
T KOG4194|consen 337 FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGL 415 (873)
T ss_pred HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccC
Confidence 66677777777777777655555666777777777777777655433 3566777777777777776 666542 23
Q ss_pred CCcCCCccCCCC
Q 013403 300 NTFPNDSYVGNS 311 (443)
Q Consensus 300 ~~~~~~~~~gn~ 311 (443)
..++..++.+|+
T Consensus 416 ~~LE~LdL~~Na 427 (873)
T KOG4194|consen 416 EALEHLDLGDNA 427 (873)
T ss_pred cccceecCCCCc
Confidence 344445555553
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2e-28 Score=236.14 Aligned_cols=307 Identities=20% Similarity=0.192 Sum_probs=245.1
Q ss_pred CCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEc
Q 013403 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L 70 (443)
.+|+.|+|.+|.|+.+-. ..++.|+.||||.| .++++|+|++|.|+..-...|.++.+|.+|.|
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 468999999999988765 56778999999998 68999999999999888889999999999999
Q ss_pred cCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccc
Q 013403 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (443)
Q Consensus 71 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 150 (443)
+.|+++...+.+|.++++|+.|+|..|.|.-.---+|.+|++|+.|.+..|+++......+ ..+.++++|+|+.|+++
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETNRLQ 282 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce--eeecccceeecccchhh
Confidence 9999996666789999999999999999976545678899999999999999877665554 88999999999999988
Q ss_pred cccchhhHHhHhhhhccCCCcccccccC-----CCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhc
Q 013403 151 GVLLTGYLDNFKAMMHGNNISVEVDYMT-----PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV 225 (443)
Q Consensus 151 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l 225 (443)
.+-. +++-+++.|.++++....+..+. ..+....++.-...+..++.+.+..+..|+.|.|++|.++.....+|
T Consensus 283 ~vn~-g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 283 AVNE-GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred hhhc-ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence 6543 45667788877776443333221 12223334444455667778888889999999999999997777889
Q ss_pred CCCCCCCEEecCCCcCCCCCC---ccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCCCCCCCc
Q 013403 226 GKLNLLKGLNISHNNLTGDIP---SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTF 302 (443)
Q Consensus 226 ~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~ 302 (443)
..+++|++|||++|.+++.+- ..|.+|++|+.|++.+|++.......|..+..|++|||.+|.|...-|....-..+
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~L 441 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMEL 441 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchh
Confidence 999999999999999987654 45788999999999999999777789999999999999999998544443222234
Q ss_pred CCCccCCCCCCCCC
Q 013403 303 PNDSYVGNSGLCGF 316 (443)
Q Consensus 303 ~~~~~~gn~~lcg~ 316 (443)
....+....++|++
T Consensus 442 k~Lv~nSssflCDC 455 (873)
T KOG4194|consen 442 KELVMNSSSFLCDC 455 (873)
T ss_pred hhhhhcccceEEec
Confidence 44555555677754
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=4.5e-25 Score=214.53 Aligned_cols=286 Identities=26% Similarity=0.330 Sum_probs=204.7
Q ss_pred CCCCccEEeccCCCCC--CcCC--CCCCCCCEEECCCC------------CCCCEEECcCCcccccccc-cccCCCCCCE
Q 013403 5 GIATLYYLDLSNNFLT--NIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPR-KFVKSCNLTS 67 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~--~~~~--~~~~~L~~L~Ls~n------------~~L~~LdLs~n~l~~~~p~-~~~~l~~L~~ 67 (443)
.++.|+.+++..|++. |+++ ..+..|..||||+| +++-+|+||+|+|. .+|. -|-++..|-+
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 4566666666666664 3333 55667777777777 66777888888877 4443 4457777778
Q ss_pred EEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCc-CCCCCCCCccCCCCCcEEEccC
Q 013403 68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW-GPIGENTTIVPFPSLRIIDLSH 146 (443)
Q Consensus 68 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~Ls~ 146 (443)
|||++|++. .+|..+..+..|++|+|++|.+..---..+..|++|++|.+++.+-+ ..+|..+ -.+.+|+.+|+|.
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl--d~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL--DDLHNLRDVDLSE 231 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch--hhhhhhhhccccc
Confidence 888888877 67777777778888888887665422222334566667777665432 2355544 6788899999999
Q ss_pred CccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcC
Q 013403 147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG 226 (443)
Q Consensus 147 n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~ 226 (443)
|++..+ | .++-++..|+.+++....+..+. ... ..-.+|+.|+||.|+++ .+|+++.
T Consensus 232 N~Lp~v-P-ecly~l~~LrrLNLS~N~iteL~-------------------~~~-~~W~~lEtLNlSrNQLt-~LP~avc 288 (1255)
T KOG0444|consen 232 NNLPIV-P-ECLYKLRNLRRLNLSGNKITELN-------------------MTE-GEWENLETLNLSRNQLT-VLPDAVC 288 (1255)
T ss_pred cCCCcc-h-HHHhhhhhhheeccCcCceeeee-------------------ccH-HHHhhhhhhccccchhc-cchHHHh
Confidence 988744 3 34566677776665332221111 111 11456889999999999 8999999
Q ss_pred CCCCCCEEecCCCcCC-CCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCCCCC-CCcCC
Q 013403 227 KLNLLKGLNISHNNLT-GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQF-NTFPN 304 (443)
Q Consensus 227 ~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-~~~~~ 304 (443)
.++.|+.|.+.+|+++ .-+|..++.+.+|+++..++|.+. .+|..+..|..|+.|.|+.|++- ++|++.++ ..+..
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~v 366 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKV 366 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcce
Confidence 9999999999999876 247889999999999999999997 88999999999999999999998 88888654 44566
Q ss_pred CccCCCCCCCCCCCC
Q 013403 305 DSYVGNSGLCGFPLL 319 (443)
Q Consensus 305 ~~~~gn~~lcg~p~~ 319 (443)
.+...||.+.-+|..
T Consensus 367 LDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 367 LDLRENPNLVMPPKP 381 (1255)
T ss_pred eeccCCcCccCCCCc
Confidence 778888888766643
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=4.3e-25 Score=214.65 Aligned_cols=245 Identities=25% Similarity=0.320 Sum_probs=159.2
Q ss_pred CCCCCCEEECCCC------------CCCCEEECcCCcccc-cccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEE
Q 013403 26 PPTNMTQLNFDSN------------LTHKVLDMRMNNFNG-KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVL 92 (443)
Q Consensus 26 ~~~~L~~L~Ls~n------------~~L~~LdLs~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 92 (443)
.+++|++|.+++| +.|+.+++..|++.. -+|..+..+..|+.|||++|+++ +.|..+...+++-+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEE
Confidence 3445555555555 666777777777653 46777777778888888888877 777777777777788
Q ss_pred EcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcc
Q 013403 93 NVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISV 172 (443)
Q Consensus 93 ~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~ 172 (443)
+||+|+|..+....|.+++.|-+||||+|++....| .. ..+..|++|+|++|.+...... .++.+++|..+...+.
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~--RRL~~LqtL~Ls~NPL~hfQLr-QLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP-QI--RRLSMLQTLKLSNNPLNHFQLR-QLPSMTSLSVLHMSNT 207 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCH-HH--HHHhhhhhhhcCCChhhHHHHh-cCccchhhhhhhcccc
Confidence 888888877444455677777788888887754433 33 6677778888888766532111 1222222222222110
Q ss_pred cccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCC
Q 013403 173 EVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNL 252 (443)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 252 (443)
... ...++..+ ..+.+|..+|+|.|++. .+|+.+-.+++|+.||||+|+|+ .+....+..
T Consensus 208 -qRT----------------l~N~Ptsl-d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W 267 (1255)
T KOG0444|consen 208 -QRT----------------LDNIPTSL-DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEW 267 (1255)
T ss_pred -cch----------------hhcCCCch-hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHH
Confidence 000 11111111 22677888888888887 77888888888888888888887 455555666
Q ss_pred CCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCc-CCCCCC
Q 013403 253 TEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE-GPIPRG 296 (443)
Q Consensus 253 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-g~iP~~ 296 (443)
.+|++|++|+|+++ .+|+.+..+++|+.|++.+|+++ .-||++
T Consensus 268 ~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 77888888888887 67777778888888888888765 245665
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=2.1e-23 Score=193.56 Aligned_cols=111 Identities=28% Similarity=0.378 Sum_probs=78.7
Q ss_pred hhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCC
Q 013403 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (443)
Q Consensus 199 ~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 278 (443)
...+.+++|..|+|++|-+. .+|..++.+..|+.||+|.|+|. .+|..+-.+..++.+-.++|++....|+.+..+.+
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 34445777888888888777 77777888888888888888876 56766666666666666677776555666777888
Q ss_pred CCeEeCcCCcCcCCCCCC-CCCCCcCCCccCCCCC
Q 013403 279 LSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSG 312 (443)
Q Consensus 279 L~~L~Ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~ 312 (443)
|..||+.+|.+. .||+. .....+......|||+
T Consensus 507 L~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 507 LTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred cceeccCCCchh-hCChhhccccceeEEEecCCcc
Confidence 888888888887 66665 3444455555666654
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=4.9e-23 Score=190.90 Aligned_cols=273 Identities=22% Similarity=0.190 Sum_probs=181.6
Q ss_pred CccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccC-CcCCCCCCccccCC
Q 013403 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVNC 86 (443)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l 86 (443)
..+.++|..|.|+.+++..|+.|+.| +.||||+|+|+.+.|++|.++.+|.+|.+.+ |+|+......|.++
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~L--------RrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRL--------RRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhh--------ceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 45678999999999999999999877 9999999999999999999999999888877 99995555679999
Q ss_pred CCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhc
Q 013403 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (443)
Q Consensus 87 ~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 166 (443)
..|+.|.+.-|++.....++|..+++|..|.+.+|.+....... +..+.+++.+.+..|.+.....-.+......+..
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~t--f~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGT--FQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcccc--ccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 99999999999999989999999999999999999985443333 4788899999999988554322122211111111
Q ss_pred cCCCc-----------ccccccCCCCCCCcceeE-------EEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCC
Q 013403 167 GNNIS-----------VEVDYMTPLNSSNYYESI-------ILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228 (443)
Q Consensus 167 ~~~~~-----------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l 228 (443)
..... .............+.+.. .......+...++.+++|+.|+|++|++++.-+.+|...
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 00000 000000000000000000 000011122334456666666666666666666666666
Q ss_pred CCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCc
Q 013403 229 NLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 229 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 290 (443)
..+++|.|..|++....-..|.++..|++|+|.+|+|+...|..|..+.+|..|++-.|.+.
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 66666666666666555556666666666666666666666666666666666666666665
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=2.1e-23 Score=193.67 Aligned_cols=263 Identities=24% Similarity=0.289 Sum_probs=192.4
Q ss_pred CccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCC
Q 013403 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (443)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 87 (443)
.++.+++++|.++...+ ...+| ..|.+|++.+|+++ ..|.+++.+..++.|+.++|++. .+|+.++.+.
T Consensus 46 ~l~~lils~N~l~~l~~-dl~nL--------~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~ 114 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE-DLKNL--------ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLI 114 (565)
T ss_pred chhhhhhccCchhhccH-hhhcc--------cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhh
Confidence 35556666666654432 12222 44588888888887 77888888888899999999988 8888888888
Q ss_pred CCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhcc
Q 013403 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHG 167 (443)
Q Consensus 88 ~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~ 167 (443)
+|+.++.+.|.+.. +|+.++.+..|..++..+|+++.. |+.+ .++.++..+++.+|++....+.. . +++.++.+
T Consensus 115 ~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~sl-p~~~--~~~~~l~~l~~~~n~l~~l~~~~-i-~m~~L~~l 188 (565)
T KOG0472|consen 115 SLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQISSL-PEDM--VNLSKLSKLDLEGNKLKALPENH-I-AMKRLKHL 188 (565)
T ss_pred hhhhhhccccceee-cCchHHHHhhhhhhhccccccccC-chHH--HHHHHHHHhhccccchhhCCHHH-H-HHHHHHhc
Confidence 99999999998887 677788888888898888888654 4444 67788888888998888665543 2 36777666
Q ss_pred CCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCc
Q 013403 168 NNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPS 247 (443)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 247 (443)
++.+... ..++... ..+.+|..|+|.+|++. ..| .|..+..|++++++.|+++ .+|.
T Consensus 189 d~~~N~L-------------------~tlP~~l-g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpa 245 (565)
T KOG0472|consen 189 DCNSNLL-------------------ETLPPEL-GGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPA 245 (565)
T ss_pred ccchhhh-------------------hcCChhh-cchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHH
Confidence 6522211 1111111 22677888899999988 677 6888899999999999998 5555
Q ss_pred cc-cCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCCCCCCCcCCCccCCCCC
Q 013403 248 SL-RNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSG 312 (443)
Q Consensus 248 ~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~ 312 (443)
.. .+++++.+|||.+|++. +.|+.+.-+++|++||+|+|.+++--++...+ .+......|||-
T Consensus 246 e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 44 48899999999999998 88888888999999999999998443333333 444555666654
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=7.5e-20 Score=190.46 Aligned_cols=234 Identities=23% Similarity=0.282 Sum_probs=176.5
Q ss_pred CCccEEeccCCCCCCcCCCCCCCCCEEECCCC---------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCC
Q 013403 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG 77 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n---------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 77 (443)
++|+.|++++|+++.+ |...++|+.|++++| ++|+.|++++|.++ .+|..+ .+|+.|++++|+++
T Consensus 222 ~~L~~L~L~~N~Lt~L-P~lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt- 295 (788)
T PRK15387 222 AHITTLVIPDNNLTSL-PALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT-HLPALP---SGLCKLWIFGNQLT- 295 (788)
T ss_pred cCCCEEEccCCcCCCC-CCCCCCCcEEEecCCccCcccCcccccceeeccCCchh-hhhhch---hhcCEEECcCCccc-
Confidence 4689999999999975 455789999999999 57899999999998 455433 56889999999999
Q ss_pred CCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhh
Q 013403 78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY 157 (443)
Q Consensus 78 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 157 (443)
.+|.. .++|+.|++++|.+++ +|.. ...|+.|++++|.+++ +|. ..++|+.|++++|++++..+ .
T Consensus 296 ~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~-----lp~~Lq~LdLS~N~Ls~LP~--l 360 (788)
T PRK15387 296 SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT-----LPSGLQELSVSDNQLASLPT--L 360 (788)
T ss_pred ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc-----cccccceEecCCCccCCCCC--C
Confidence 56653 4789999999999998 5542 2468889999999865 443 12579999999999986432 1
Q ss_pred HHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecC
Q 013403 158 LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237 (443)
Q Consensus 158 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 237 (443)
..++..|...+ +.+.. ++ ..+.+|+.|++++|++++ +|.. .++|+.|+++
T Consensus 361 p~~L~~L~Ls~------N~L~~----------------LP----~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS 410 (788)
T PRK15387 361 PSELYKLWAYN------NRLTS----------------LP----ALPSGLKELIVSGNRLTS-LPVL---PSELKELMVS 410 (788)
T ss_pred Ccccceehhhc------ccccc----------------Cc----ccccccceEEecCCcccC-CCCc---ccCCCEEEcc
Confidence 22222221110 11111 11 124578999999999994 5543 3689999999
Q ss_pred CCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCC
Q 013403 238 HNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296 (443)
Q Consensus 238 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~ 296 (443)
+|++++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.+++++|+|+|.+|..
T Consensus 411 ~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 411 GNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred CCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 999985 6654 357889999999998 78999999999999999999999887764
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.6e-19 Score=187.41 Aligned_cols=237 Identities=23% Similarity=0.300 Sum_probs=169.7
Q ss_pred CCccEEeccCCCCCCcCCCCCCCCCEEECCCC----------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCC
Q 013403 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n----------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (443)
.+...|+++++.++.++..-..+++.|++++| ++|+.|++++|+++ .+|..+. .+|+.|+|++|.++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence 45678888888888765444567888888888 57899999999998 5676554 37999999999998
Q ss_pred CCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchh
Q 013403 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (443)
Q Consensus 77 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 156 (443)
.+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|++++ +|..+ .++|+.|++++|.++.. |..
T Consensus 255 -~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l----p~sL~~L~Ls~N~Lt~L-P~~ 322 (754)
T PRK15370 255 -ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHL----PSGITHLNVQSNSLTAL-PET 322 (754)
T ss_pred -cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccc----hhhHHHHHhcCCccccC-Ccc
Confidence 7787764 589999999999986 676554 589999999999875 34322 25788899999998854 322
Q ss_pred hHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEec
Q 013403 157 YLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236 (443)
Q Consensus 157 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 236 (443)
...+ |+.+.... +.+. .++. ..+++|+.|++++|+++ .+|..+. ++|+.|++
T Consensus 323 l~~s---L~~L~Ls~---N~Lt----------------~LP~---~l~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdL 374 (754)
T PRK15370 323 LPPG---LKTLEAGE---NALT----------------SLPA---SLPPELQVLDVSKNQIT-VLPETLP--PTITTLDV 374 (754)
T ss_pred cccc---ceeccccC---Cccc----------------cCCh---hhcCcccEEECCCCCCC-cCChhhc--CCcCEEEC
Confidence 2222 22222111 0111 1111 11467899999999988 5666553 68999999
Q ss_pred CCCcCCCCCCccccCCCCCCeeecCCCcCCCCCccc----ccCCCCCCeEeCcCCcCc
Q 013403 237 SHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ----LTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 237 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~ 290 (443)
++|+++ .+|..+. .+|+.|++++|++. .+|.. ...++.+..+++.+|+++
T Consensus 375 s~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 375 SRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 999998 4665554 36899999999987 44543 344578889999999987
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=4.4e-19 Score=185.72 Aligned_cols=219 Identities=22% Similarity=0.358 Sum_probs=163.4
Q ss_pred CCCCEEECCCC----------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccC
Q 013403 28 TNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN 97 (443)
Q Consensus 28 ~~L~~L~Ls~n----------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 97 (443)
.+...|+++++ +.|+.|+|++|+++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|+|++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCC
Confidence 45667777766 57999999999999 5676654 48999999999999 6787654 47999999999
Q ss_pred CCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCccccccc
Q 013403 98 QINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM 177 (443)
Q Consensus 98 ~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~ 177 (443)
.+.. +|..+. .+|+.|++++|+++. +|..+ .++|+.|++++|++++. |..+...+..|.... +.+
T Consensus 252 ~L~~-LP~~l~--s~L~~L~Ls~N~L~~-LP~~l----~~sL~~L~Ls~N~Lt~L-P~~lp~sL~~L~Ls~------N~L 316 (754)
T PRK15370 252 RITE-LPERLP--SALQSLDLFHNKISC-LPENL----PEELRYLSVYDNSIRTL-PAHLPSGITHLNVQS------NSL 316 (754)
T ss_pred ccCc-CChhHh--CCCCEEECcCCccCc-ccccc----CCCCcEEECCCCccccC-cccchhhHHHHHhcC------Ccc
Confidence 9986 777664 589999999999974 56543 25899999999999864 333233333332111 111
Q ss_pred CCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCe
Q 013403 178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVES 257 (443)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 257 (443)
.. ++. ...++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.
T Consensus 317 t~----------------LP~---~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~ 371 (754)
T PRK15370 317 TA----------------LPE---TLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITT 371 (754)
T ss_pred cc----------------CCc---cccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCE
Confidence 11 111 114679999999999985 666553 69999999999998 5776553 68999
Q ss_pred eecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCC
Q 013403 258 LDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296 (443)
Q Consensus 258 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~ 296 (443)
|++++|+++ .+|..+. ..|+.|++++|+++ .+|..
T Consensus 372 LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~s 406 (754)
T PRK15370 372 LDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPES 406 (754)
T ss_pred EECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchh
Confidence 999999998 5666554 47999999999998 66753
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=5.7e-18 Score=188.32 Aligned_cols=271 Identities=17% Similarity=0.174 Sum_probs=159.1
Q ss_pred CCCCccEEeccCCCCC------CcCCC----CCCCCCEEECCCC-----------CCCCEEECcCCcccccccccccCCC
Q 013403 5 GIATLYYLDLSNNFLT------NIEYF----PPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSC 63 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~------~~~~~----~~~~L~~L~Ls~n-----------~~L~~LdLs~n~l~~~~p~~~~~l~ 63 (443)
+|++|+.|.+..+... ...|. -..+|+.|++.++ .+|+.|++++|++. .+|..+..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccccccccCC
Confidence 6788888888665432 12231 1245777777766 57888888888876 5677778888
Q ss_pred CCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEE
Q 013403 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143 (443)
Q Consensus 64 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 143 (443)
+|++|+|+++...+.+|. ++.+++|++|++++|.....+|..+..+++|+.|++++|...+.+|... ++++|+.|+
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~ 710 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLN 710 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEe
Confidence 888888887654446664 7778888888888877666678888888888888888876555566532 567777787
Q ss_pred ccCCccccccchhhHHhHhhhhccCCCcccccccCCC---CCCCccee-------EEEEeccchhhhHhhhccccEEEcc
Q 013403 144 LSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL---NSSNYYES-------IILTIKGIDIKMERILTIFMTIDLS 213 (443)
Q Consensus 144 Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~~~~L~~L~Ls 213 (443)
+++|......|.. ..++ ..+.........+... .....+.. ...............+++|+.|+++
T Consensus 711 Lsgc~~L~~~p~~-~~nL---~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 711 LSGCSRLKSFPDI-STNI---SWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred CCCCCCccccccc-cCCc---CeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 7777543333211 1111 1111111111000000 00000000 0000001111112224677888888
Q ss_pred CCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCC---------------------CcCCCCCccc
Q 013403 214 SNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSS---------------------NMLVGHIPTQ 272 (443)
Q Consensus 214 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~---------------------N~l~~~~p~~ 272 (443)
+|...+.+|..++++++|+.|++++|..-+.+|..+ ++++|+.|++++ |.+. .+|.+
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~s 864 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWW 864 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHH
Confidence 877666778778888888888887765433555543 445555555554 4444 45555
Q ss_pred ccCCCCCCeEeCcC
Q 013403 273 LTSLKYLSVLNLSY 286 (443)
Q Consensus 273 ~~~l~~L~~L~Ls~ 286 (443)
+..+++|+.|++++
T Consensus 865 i~~l~~L~~L~L~~ 878 (1153)
T PLN03210 865 IEKFSNLSFLDMNG 878 (1153)
T ss_pred HhcCCCCCEEECCC
Confidence 56666666666665
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=2.1e-18 Score=179.74 Aligned_cols=247 Identities=21% Similarity=0.239 Sum_probs=157.4
Q ss_pred CCccEEeccCCCCCCcCCCCCCCCCEEECCCC---------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCC
Q 013403 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG 77 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n---------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 77 (443)
.+-..|++++|.++.+++.-..+|+.|++++| ++|++|++++|+|+ .+|.. .++|+.|++++|.++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~- 275 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT- 275 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCCCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-
Confidence 44678999999999766544567877877777 56777777777777 34532 346777777777776
Q ss_pred CCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhh
Q 013403 78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY 157 (443)
Q Consensus 78 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 157 (443)
.+|..+ ++|+.|++++|.++. +|. .+++|+.|++++|++++. |.. .++|+.|++++|++++.. . .
T Consensus 276 ~Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l-----p~~L~~L~Ls~N~L~~LP-~-l 340 (788)
T PRK15387 276 HLPALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL-----PSELCKLWAYNNQLTSLP-T-L 340 (788)
T ss_pred hhhhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC-----cccccccccccCcccccc-c-c
Confidence 455432 456777777777775 443 236677777777777653 321 235667777777776432 1 1
Q ss_pred HHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecC
Q 013403 158 LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237 (443)
Q Consensus 158 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 237 (443)
. ..|..++... +.+.. ++ ....+|+.|++++|+++ .+|.. ..+|+.|+++
T Consensus 341 p---~~Lq~LdLS~---N~Ls~----------------LP----~lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs 390 (788)
T PRK15387 341 P---SGLQELSVSD---NQLAS----------------LP----TLPSELYKLWAYNNRLT-SLPAL---PSGLKELIVS 390 (788)
T ss_pred c---cccceEecCC---CccCC----------------CC----CCCcccceehhhccccc-cCccc---ccccceEEec
Confidence 1 1222222211 11111 11 11346777888888887 35543 3578899999
Q ss_pred CCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCC-CCCCCcCCCccCCCCC
Q 013403 238 HNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSG 312 (443)
Q Consensus 238 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~ 312 (443)
+|++++ +|.. .++|+.|++++|+++. +|.. ..+|+.|++++|+++ .+|.. ..+..+....+.+|+.
T Consensus 391 ~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 391 GNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred CCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence 999984 5543 3678999999999984 6653 346788999999998 78865 2344555556667754
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=1.6e-20 Score=190.67 Aligned_cols=279 Identities=27% Similarity=0.359 Sum_probs=201.5
Q ss_pred CCCCccEEeccCCCCCCcCCCCCCCCCEEECCCC-----------CCCCEEECcCCcccccccccccCCCCCCEEEccCC
Q 013403 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n-----------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n 73 (443)
.+.+|+.+....|.++... ..-.+++.|+.++| .+|+++|++.|+++ .+|.+++.+.+|+.+...+|
T Consensus 197 ~~~~l~~l~c~rn~ls~l~-~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N 274 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELE-ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHN 274 (1081)
T ss_pred hccchhhhhhhhcccceEE-ecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccch
Confidence 4566677777777776544 33457778888887 68999999999998 57799999999999999999
Q ss_pred cCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCC-CCcEEEccCCccccc
Q 013403 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFP-SLRIIDLSHNEFTGV 152 (443)
Q Consensus 74 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~ 152 (443)
+++ .+|..+...++|+.|.+..|.+.. +|....+++.|++|+|..|++.. .|..+ +.... +|+.++.+.|.+...
T Consensus 275 ~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~-lp~~~-l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 275 RLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPS-LPDNF-LAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred hHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccc-cchHH-HhhhhHHHHHHhhhhcccccc
Confidence 997 899999999999999999999988 67778889999999999999844 34322 12222 366777777766543
Q ss_pred cchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCC
Q 013403 153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 232 (443)
Q Consensus 153 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 232 (443)
...+ -.....|..+.+.+ +. ...-.......++.|+.|+|++|++.......+.+++.|+
T Consensus 351 p~~~-e~~~~~Lq~Lylan---N~----------------Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 351 PSYE-ENNHAALQELYLAN---NH----------------LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELE 410 (1081)
T ss_pred cccc-chhhHHHHHHHHhc---Cc----------------ccccchhhhccccceeeeeecccccccCCHHHHhchHHhH
Confidence 3111 11122222111100 00 0001112223367889999999999855555678889999
Q ss_pred EEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcC-CCCCCCCCCCcCCCccCCCC
Q 013403 233 GLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG-PIPRGSQFNTFPNDSYVGNS 311 (443)
Q Consensus 233 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g-~iP~~~~~~~~~~~~~~gn~ 311 (443)
+|+||+|.++ .+|+.+..++.|++|...+|++. ..| .+.+++.|+.+|+|.|+++. .+|......++...++.||.
T Consensus 411 eL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 411 ELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 9999999998 68888888999999999999887 566 67888999999999999873 34544444567777788887
Q ss_pred C
Q 013403 312 G 312 (443)
Q Consensus 312 ~ 312 (443)
.
T Consensus 488 ~ 488 (1081)
T KOG0618|consen 488 R 488 (1081)
T ss_pred c
Confidence 4
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.75 E-value=2.7e-20 Score=172.84 Aligned_cols=234 Identities=19% Similarity=0.135 Sum_probs=175.5
Q ss_pred CCCCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCcccc
Q 013403 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (443)
.+++|+.||||+|.|+.+.|..|..|..+ ++.+++++|+|+......|+++..|+.|.+.-|++.-...++|.
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l-------~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~ 161 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASL-------LSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALR 161 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhh-------hHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHH
Confidence 57899999999999999999888887766 24467777999976668999999999999999999987888899
Q ss_pred CCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcC------------CCCCCCCccCCCCCcEEEccCCcc---
Q 013403 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG------------PIGENTTIVPFPSLRIIDLSHNEF--- 149 (443)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~------------~~~~~~~~~~l~~L~~L~Ls~n~l--- 149 (443)
.+++|..|.+.+|.+..+--..|..+..++++.+..|.+.. ..|..+ +.+.......+.+.++
T Consensus 162 dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet--sgarc~~p~rl~~~Ri~q~ 239 (498)
T KOG4237|consen 162 DLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET--SGARCVSPYRLYYKRINQE 239 (498)
T ss_pred HhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc--ccceecchHHHHHHHhccc
Confidence 99999999999999988545588899999999999887411 111111 2222222222222222
Q ss_pred ----------------------ccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccc
Q 013403 150 ----------------------TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIF 207 (443)
Q Consensus 150 ----------------------~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 207 (443)
.+..|...++.++.|+.++. ....+..+....+.....+
T Consensus 240 ~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl-------------------snN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 240 DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNL-------------------SNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEecc-------------------CCCccchhhhhhhcchhhh
Confidence 22333333333333333332 1223445556667778899
Q ss_pred cEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCC
Q 013403 208 MTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLV 266 (443)
Q Consensus 208 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 266 (443)
+.|.|..|++...-...|..+..|+.|+|.+|+|+...|.+|..+.+|.+|+|-.|.+.
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 99999999998777788999999999999999999999999999999999999888664
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=3.1e-17 Score=182.46 Aligned_cols=239 Identities=22% Similarity=0.276 Sum_probs=167.5
Q ss_pred CCCCCCCEEECCCC--------------------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCcccc
Q 013403 25 FPPTNMTQLNFDSN--------------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (443)
Q Consensus 25 ~~~~~L~~L~Ls~n--------------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (443)
..+.+|+.|.+.++ ..|+.|++.++.+. .+|..| ...+|+.|++++|.+. .+|..+.
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~ 631 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVH 631 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccc
Confidence 45778888877432 46899999999887 778777 5789999999999998 7888889
Q ss_pred CCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhh
Q 013403 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (443)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 164 (443)
.+++|+.|+|+++.....+|. +..+++|++|++++|.....+|..+ +.+++|+.|++++|..-...|... +++.|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL 706 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI--QYLNKLEDLDMSRCENLEILPTGI--NLKSL 706 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh--hccCCCCEEeCCCCCCcCccCCcC--CCCCC
Confidence 999999999998865555774 7889999999999988777788766 889999999999976444555432 34444
Q ss_pred hccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCch---------------------
Q 013403 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE--------------------- 223 (443)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~--------------------- 223 (443)
..++..... .+.. +.....+|+.|++++|.+. .+|.
T Consensus 707 ~~L~Lsgc~--~L~~--------------------~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 707 YRLNLSGCS--RLKS--------------------FPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred CEEeCCCCC--Cccc--------------------cccccCCcCeeecCCCccc-cccccccccccccccccccchhhcc
Confidence 444331110 0000 0011233444444444443 2222
Q ss_pred ---------hcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCC
Q 013403 224 ---------VVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294 (443)
Q Consensus 224 ---------~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP 294 (443)
.....++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... .+++|+.|++++|.....+|
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence 12234577888888887777788888888888888888876555677655 67888888888876554555
Q ss_pred C
Q 013403 295 R 295 (443)
Q Consensus 295 ~ 295 (443)
.
T Consensus 843 ~ 843 (1153)
T PLN03210 843 D 843 (1153)
T ss_pred c
Confidence 4
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=2.5e-19 Score=182.07 Aligned_cols=275 Identities=24% Similarity=0.247 Sum_probs=204.2
Q ss_pred CCccE-EeccCCCCCCcCCCCCCCCCEEECCCC---------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCC
Q 013403 7 ATLYY-LDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (443)
Q Consensus 7 ~~L~~-L~Ls~n~l~~~~~~~~~~L~~L~Ls~n---------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (443)
.++++ |||+.|.+....-..+.+|+.+....| ++|+.|+.+.|.++...+. ..-.+|++++++.|+++
T Consensus 177 ~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 177 YNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS 254 (1081)
T ss_pred hhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhh
Confidence 34444 777777776332355666666655555 7888888888888733322 23347999999999999
Q ss_pred CCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchh
Q 013403 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (443)
Q Consensus 77 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 156 (443)
.+|+.++.+.+|+.++..+|++.. +|..+...++|+.|++..|.+....+. . ..+++|++|+|..|++..... .
T Consensus 255 -~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yip~~-l--e~~~sL~tLdL~~N~L~~lp~-~ 328 (1081)
T KOG0618|consen 255 -NLPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYIPPF-L--EGLKSLRTLDLQSNNLPSLPD-N 328 (1081)
T ss_pred -cchHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhCCCc-c--cccceeeeeeehhccccccch-H
Confidence 677888999999999999999965 888888899999999999998655443 3 678999999999999985544 3
Q ss_pred hHHhHhh-hhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEe
Q 013403 157 YLDNFKA-MMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235 (443)
Q Consensus 157 ~~~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 235 (443)
++.-... +..++.......... ..-...+..|+.|.+.+|.++...-..+..+.+|+.|+
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~lp-------------------~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTLP-------------------SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred HHhhhhHHHHHHhhhhccccccc-------------------cccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 3332222 333333221111111 00012266789999999999988888889999999999
Q ss_pred cCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCCCCCCCcCCCccCCC
Q 013403 236 ISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGN 310 (443)
Q Consensus 236 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn 310 (443)
|++|++.......+.++..|+.|+||+|+++ .+|.++..++.|++|...+|++. ..|+..+...+...+.+.|
T Consensus 390 LsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 390 LSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCN 462 (1081)
T ss_pred ecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccc
Confidence 9999998555567889999999999999999 78899999999999999999999 7887666666555554444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.2e-18 Score=168.18 Aligned_cols=87 Identities=26% Similarity=0.321 Sum_probs=59.2
Q ss_pred hccccEEEccCCcCCCC----CchhcCCCCCCCEEecCCCcCCCCCCcccc-----CCCCCCeeecCCCcCCC----CCc
Q 013403 204 LTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGDIPSSLR-----NLTEVESLDLSSNMLVG----HIP 270 (443)
Q Consensus 204 ~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~----~~p 270 (443)
.+.|+.|++++|.+++. ++..+..+++|++|++++|.+++.....+. ..+.|++|++++|.++. .+.
T Consensus 192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 271 (319)
T cd00116 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLA 271 (319)
T ss_pred CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHH
Confidence 34788888888887643 234456677888888888887753222221 23688888888888762 234
Q ss_pred ccccCCCCCCeEeCcCCcCc
Q 013403 271 TQLTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 271 ~~~~~l~~L~~L~Ls~N~l~ 290 (443)
..+..+++|+++++++|+++
T Consensus 272 ~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 272 EVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHhcCCCccEEECCCCCCc
Confidence 45566678888888888887
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=2.3e-18 Score=166.18 Aligned_cols=236 Identities=21% Similarity=0.249 Sum_probs=146.2
Q ss_pred CCCCEEECcCCccc------ccccccccCCCCCCEEEccCCcCCCCCCccccCCCC---CcEEEcccCCCCCC----Cch
Q 013403 39 LTHKVLDMRMNNFN------GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH---LEVLNVGNNQINDN----FPN 105 (443)
Q Consensus 39 ~~L~~LdLs~n~l~------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~~----~p~ 105 (443)
+++++++++++.+. ..++..+..+.+|++|++++|.+.+..+..+..+.+ |++|++++|.+++. +..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 34677777777665 233455667778888888888877656655555555 88888888877632 223
Q ss_pred hhhCC-CCCcEEEeecccCcCCCCCCC--CccCCCCCcEEEccCCccccccchhhHHhHh---hhhccCCCcccccccCC
Q 013403 106 WLEIL-PELQVLILRSNRFWGPIGENT--TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK---AMMHGNNISVEVDYMTP 179 (443)
Q Consensus 106 ~~~~L-~~L~~L~L~~N~l~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~---~L~~~~~~~~~~~~~~~ 179 (443)
.+..+ ++|+.|++++|.+++...... .+..+++|+.|++++|.+++.........+. .|+.++... ..+..
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~---n~i~~ 207 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN---NGLTD 207 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC---CccCh
Confidence 44556 778888888887764221111 1245567888888888777533222222333 233222211 00000
Q ss_pred CCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcC-----CCCCCCEEecCCCcCCC----CCCcccc
Q 013403 180 LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG-----KLNLLKGLNISHNNLTG----DIPSSLR 250 (443)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~----~~p~~~~ 250 (443)
.. ...+ ......+++|+.|++++|.+++.....+. ..+.|++|++++|.++. .+...+.
T Consensus 208 ~~-----------~~~l-~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~ 275 (319)
T cd00116 208 EG-----------ASAL-AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA 275 (319)
T ss_pred HH-----------HHHH-HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh
Confidence 00 0000 11122367899999999998864333332 24799999999999972 2344566
Q ss_pred CCCCCCeeecCCCcCCCC----CcccccCC-CCCCeEeCcCCcC
Q 013403 251 NLTEVESLDLSSNMLVGH----IPTQLTSL-KYLSVLNLSYNQF 289 (443)
Q Consensus 251 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~Ls~N~l 289 (443)
.+++|+.+++++|.++.. ....+... +.|+.+++.+|++
T Consensus 276 ~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 276 EKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 778999999999999865 44445555 7899999998864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.6e-18 Score=143.81 Aligned_cols=157 Identities=31% Similarity=0.538 Sum_probs=106.4
Q ss_pred ccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCC
Q 013403 59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPS 138 (443)
Q Consensus 59 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 138 (443)
+.++.+.+.|.|++|+++ .+|..++.+.+|+.|++++|+|.. +|..++.+++|+.|+++-|++. ..|..+ +.++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgf--gs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGF--GSFPA 103 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCcccc--CCCch
Confidence 446667788888888888 677778888888888888888877 7778888888888888888773 344444 77888
Q ss_pred CcEEEccCCcccccc-chhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcC
Q 013403 139 LRIIDLSHNEFTGVL-LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKF 217 (443)
Q Consensus 139 L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 217 (443)
|+.||+++|++.... |..|+. +..|+.|+|+.|.+
T Consensus 104 levldltynnl~e~~lpgnff~--------------------------------------------m~tlralyl~dndf 139 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFY--------------------------------------------MTTLRALYLGDNDF 139 (264)
T ss_pred hhhhhccccccccccCCcchhH--------------------------------------------HHHHHHHHhcCCCc
Confidence 888888888776432 222111 34455566666666
Q ss_pred CCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCC
Q 013403 218 QGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLV 266 (443)
Q Consensus 218 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 266 (443)
. .+|..++++.+|+.|.+..|.+- .+|..++.++.|+.|++.+|+++
T Consensus 140 e-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 140 E-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred c-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 6 55555666666666666666655 45666666666666666666655
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.64 E-value=1e-15 Score=159.56 Aligned_cols=118 Identities=36% Similarity=0.613 Sum_probs=105.8
Q ss_pred cccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCc
Q 013403 206 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLS 285 (443)
Q Consensus 206 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 285 (443)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcCCCCCCCC--CCCcCCCccCCCCCCCCCCCCCCCC
Q 013403 286 YNQFEGPIPRGSQ--FNTFPNDSYVGNSGLCGFPLLESCN 323 (443)
Q Consensus 286 ~N~l~g~iP~~~~--~~~~~~~~~~gn~~lcg~p~~~~C~ 323 (443)
+|+++|.+|.... ........+.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999998632 2233456788999999987666664
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-17 Score=138.62 Aligned_cols=161 Identities=30% Similarity=0.441 Sum_probs=138.2
Q ss_pred CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEe
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L 118 (443)
...+.|.||+|+++ .+|..+..+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|++.. .|..|+.+|.|++||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-CccccCCCchhhhhhc
Confidence 34577889999998 77888999999999999999999 899999999999999999999986 8999999999999999
Q ss_pred ecccCcC-CCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccch
Q 013403 119 RSNRFWG-PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID 197 (443)
Q Consensus 119 ~~N~l~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (443)
..|++.. .+|..+ ..+..|+-|+++.|.+.-..++. +
T Consensus 110 tynnl~e~~lpgnf--f~m~tlralyl~dndfe~lp~dv--g-------------------------------------- 147 (264)
T KOG0617|consen 110 TYNNLNENSLPGNF--FYMTTLRALYLGDNDFEILPPDV--G-------------------------------------- 147 (264)
T ss_pred cccccccccCCcch--hHHHHHHHHHhcCCCcccCChhh--h--------------------------------------
Confidence 9999865 456665 67889999999999987544321 1
Q ss_pred hhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccC
Q 013403 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRN 251 (443)
Q Consensus 198 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 251 (443)
.+++|+.|.+..|.+- ..|..++.+..|++|++.+|+++ .+|..+++
T Consensus 148 -----~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 148 -----KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred -----hhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 2678889999999987 78999999999999999999998 56655543
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=3.4e-12 Score=126.96 Aligned_cols=199 Identities=31% Similarity=0.453 Sum_probs=152.7
Q ss_pred EEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCC-CCcEEEcccCCCCCCCchhhhCCCCCcEEEeecc
Q 013403 43 VLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH-HLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (443)
Q Consensus 43 ~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N 121 (443)
.++++.|.+.. ....+..++.++.|++.+|.++ .+|....... +|+.|++++|.+.. +|..++.++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 47888887752 3334556678999999999999 7777777774 89999999999987 6667889999999999999
Q ss_pred cCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhH
Q 013403 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (443)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (443)
+++...+. . +..+.|+.|++++|+++......
T Consensus 174 ~l~~l~~~-~--~~~~~L~~L~ls~N~i~~l~~~~--------------------------------------------- 205 (394)
T COG4886 174 DLSDLPKL-L--SNLSNLNNLDLSGNKISDLPPEI--------------------------------------------- 205 (394)
T ss_pred hhhhhhhh-h--hhhhhhhheeccCCccccCchhh---------------------------------------------
Confidence 98654432 1 37789999999999988554321
Q ss_pred hhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCe
Q 013403 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV 281 (443)
Q Consensus 202 ~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 281 (443)
..+..|+.+++++|.+. ..+..+..+..+..+.+++|++. ..+..++.+++++.|++++|+++. ++. +..+.+++.
T Consensus 206 ~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~ 281 (394)
T COG4886 206 ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRE 281 (394)
T ss_pred hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCE
Confidence 01345778888888644 55666788888888889999887 447778888899999999999984 443 788899999
Q ss_pred EeCcCCcCcCCCCCC
Q 013403 282 LNLSYNQFEGPIPRG 296 (443)
Q Consensus 282 L~Ls~N~l~g~iP~~ 296 (443)
|++++|.++...|..
T Consensus 282 L~~s~n~~~~~~~~~ 296 (394)
T COG4886 282 LDLSGNSLSNALPLI 296 (394)
T ss_pred EeccCccccccchhh
Confidence 999999988665554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=6.6e-13 Score=129.34 Aligned_cols=170 Identities=27% Similarity=0.453 Sum_probs=125.3
Q ss_pred CEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecc
Q 013403 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (443)
Q Consensus 42 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N 121 (443)
...||+.|.+. .+|..++.+..|+.+.|..|.+. .+|.+++++..|..|||+.|+++. +|..++.|+ |+.|.+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecC
Confidence 67899999998 88999999999999999999999 899999999999999999999987 777777664 899999999
Q ss_pred cCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhH
Q 013403 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (443)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (443)
+++ .+|..+ +....|..||.+.|++....+ . .+.+.
T Consensus 154 kl~-~lp~~i--g~~~tl~~ld~s~nei~slps-q-l~~l~--------------------------------------- 189 (722)
T KOG0532|consen 154 KLT-SLPEEI--GLLPTLAHLDVSKNEIQSLPS-Q-LGYLT--------------------------------------- 189 (722)
T ss_pred ccc-cCCccc--ccchhHHHhhhhhhhhhhchH-H-hhhHH---------------------------------------
Confidence 984 456666 678899999999999875433 2 33333
Q ss_pred hhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCC
Q 013403 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLV 266 (443)
Q Consensus 202 ~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 266 (443)
+|+.|.+..|++. .+|+.+..+ .|..||+|.|+++ .+|..|..|+.|++|-|.+|.+.
T Consensus 190 ----slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 190 ----SLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ----HHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 3444445555555 344444432 4556666666665 56666666666666666666665
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.21 E-value=2.8e-11 Score=126.39 Aligned_cols=108 Identities=29% Similarity=0.409 Sum_probs=86.7
Q ss_pred CCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeec
Q 013403 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (443)
Q Consensus 41 L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~ 120 (443)
++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|+|++|.+++.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 47788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccCcCCCCCCCCccC-CCCCcEEEccCCccc
Q 013403 121 NRFWGPIGENTTIVP-FPSLRIIDLSHNEFT 150 (443)
Q Consensus 121 N~l~~~~~~~~~~~~-l~~L~~L~Ls~n~l~ 150 (443)
|.++|.+|..+ +. ..++..+++.+|...
T Consensus 500 N~l~g~iP~~l--~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAAL--GGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHH--hhccccCceEEecCCccc
Confidence 88888888765 32 345667777777543
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=2.8e-11 Score=120.35 Aligned_cols=182 Identities=32% Similarity=0.466 Sum_probs=141.3
Q ss_pred CCCCEEECcCCcccccccccccCCC-CCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEE
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSC-NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~ 117 (443)
+.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++. +|...+.++.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhee
Confidence 45799999999998 6777777775 9999999999999 777788999999999999999998 666666889999999
Q ss_pred eecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccch
Q 013403 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID 197 (443)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (443)
+++|++... |... .....|+++++++|++..... . .
T Consensus 193 ls~N~i~~l-~~~~--~~~~~L~~l~~~~N~~~~~~~-~-~--------------------------------------- 228 (394)
T COG4886 193 LSGNKISDL-PPEI--ELLSALEELDLSNNSIIELLS-S-L--------------------------------------- 228 (394)
T ss_pred ccCCccccC-chhh--hhhhhhhhhhhcCCcceecch-h-h---------------------------------------
Confidence 999998654 3322 345569999999996321211 0 1
Q ss_pred hhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCccccc
Q 013403 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLT 274 (443)
Q Consensus 198 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 274 (443)
..+..+..+.+.+|++. ..+..++.+++++.|++++|.++. ++. ++.+.+++.|++++|.++...|....
T Consensus 229 ----~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 229 ----SNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred ----hhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhhhc
Confidence 11445566667778776 446778888899999999999984 444 88899999999999999877665443
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.2e-11 Score=115.41 Aligned_cols=208 Identities=24% Similarity=0.255 Sum_probs=121.3
Q ss_pred CCCCCCEEEccCCcCCCCCC--ccccCCCCCcEEEcccCCCCCCCc--hhhhCCCCCcEEEeecccCcCCCCCCCCccCC
Q 013403 61 KSCNLTSLNLNGNRLEGPLP--PSLVNCHHLEVLNVGNNQINDNFP--NWLEILPELQVLILRSNRFWGPIGENTTIVPF 136 (443)
Q Consensus 61 ~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l 136 (443)
++++|+...|.+..+. ..+ +....|++++.|||+.|-+....| .....+|+|+.|+++.|++.-....... ..+
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-LLL 196 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-hhh
Confidence 5677888888887776 333 245678888888888888776433 2345788888888888887544433322 467
Q ss_pred CCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCc
Q 013403 137 PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK 216 (443)
Q Consensus 137 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~ 216 (443)
+.|+.|.++.|.++..........++.+..+.+...+.. .. ...-..++..|+.|||++|+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~----------------~~---~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII----------------LI---KATSTKILQTLQELDLSNNN 257 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc----------------ce---ecchhhhhhHHhhccccCCc
Confidence 788888888888874433333333333333322111000 00 00112235567777777777
Q ss_pred CCCCC-chhcCCCCCCCEEecCCCcCCCC-CCcc-----ccCCCCCCeeecCCCcCCCCCc--ccccCCCCCCeEeCcCC
Q 013403 217 FQGGI-PEVVGKLNLLKGLNISHNNLTGD-IPSS-----LRNLTEVESLDLSSNMLVGHIP--TQLTSLKYLSVLNLSYN 287 (443)
Q Consensus 217 l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N 287 (443)
+-... -...+.++.|..|+++.+.+... .|+. -..+++|+.|+++.|++.. ++ ..+..+++|+.|....|
T Consensus 258 li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 258 LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhcccc
Confidence 54221 23456677777777777776532 1222 2345677777777777742 21 12334556666666667
Q ss_pred cCc
Q 013403 288 QFE 290 (443)
Q Consensus 288 ~l~ 290 (443)
.++
T Consensus 337 ~ln 339 (505)
T KOG3207|consen 337 YLN 339 (505)
T ss_pred ccc
Confidence 665
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=4.1e-12 Score=117.22 Aligned_cols=238 Identities=20% Similarity=0.229 Sum_probs=150.0
Q ss_pred CCCCccEEeccCCCCCCcCC----CCCCCCCEEECCCCCCCCEEECcCC---ccccccccc-------ccCCCCCCEEEc
Q 013403 5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSNLTHKVLDMRMN---NFNGKIPRK-------FVKSCNLTSLNL 70 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~Ls~n~~L~~LdLs~n---~l~~~~p~~-------~~~l~~L~~L~L 70 (443)
.+..++.++||+|.+..... ..+.+. ++|+..++|.= .+...+|.. +-+.++|++|+|
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~--------~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASK--------KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhc--------ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 34566667777776654332 111111 34456665531 122233433 335668888888
Q ss_pred cCCcCCCCCCcc----ccCCCCCcEEEcccCCCCCCCchh-------------hhCCCCCcEEEeecccCcCCCCCCC--
Q 013403 71 NGNRLEGPLPPS----LVNCHHLEVLNVGNNQINDNFPNW-------------LEILPELQVLILRSNRFWGPIGENT-- 131 (443)
Q Consensus 71 ~~n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~-------------~~~L~~L~~L~L~~N~l~~~~~~~~-- 131 (443)
|+|-+....+.. +..+..|++|.|.+|.+...--.. ...-+.|+++...+|++........
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHH
Confidence 888877544443 456788888888888775321111 2234568888888887633221111
Q ss_pred CccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEE
Q 013403 132 TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTID 211 (443)
Q Consensus 132 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 211 (443)
.+...+.|+.+.+++|.+......... ..+..++.|+.||
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~----------------------------------------eal~~~~~LevLd 219 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALA----------------------------------------EALEHCPHLEVLD 219 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHH----------------------------------------HHHHhCCcceeee
Confidence 235567788888888776533221111 1123378899999
Q ss_pred ccCCcCCCC----CchhcCCCCCCCEEecCCCcCCCCCCccc-----cCCCCCCeeecCCCcCCCC----CcccccCCCC
Q 013403 212 LSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGDIPSSL-----RNLTEVESLDLSSNMLVGH----IPTQLTSLKY 278 (443)
Q Consensus 212 Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~ 278 (443)
|..|-|+.. +...+..+++|+.|++++|.++..-..+| ...++|++|.+.+|.++.. +-..+...+.
T Consensus 220 l~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d 299 (382)
T KOG1909|consen 220 LRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPD 299 (382)
T ss_pred cccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh
Confidence 999988743 34567788999999999999975444333 3478999999999999754 2334566889
Q ss_pred CCeEeCcCCcCc
Q 013403 279 LSVLNLSYNQFE 290 (443)
Q Consensus 279 L~~L~Ls~N~l~ 290 (443)
|..|+|++|.+.
T Consensus 300 L~kLnLngN~l~ 311 (382)
T KOG1909|consen 300 LEKLNLNGNRLG 311 (382)
T ss_pred hHHhcCCccccc
Confidence 999999999994
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=2.1e-10 Score=99.15 Aligned_cols=107 Identities=27% Similarity=0.384 Sum_probs=42.5
Q ss_pred CCCEEECcCCccccccccccc-CCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhh-hCCCCCcEEE
Q 013403 40 THKVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL-EILPELQVLI 117 (443)
Q Consensus 40 ~L~~LdLs~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~L~~L~~L~ 117 (443)
.+++|+|++|.|+. +. .++ .+.+|+.|++++|.++ .++ .+..+++|++|++++|.|+.. +..+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 44888999998873 33 444 5788999999999998 444 477889999999999999884 3344 4689999999
Q ss_pred eecccCcCCCCCCCCccCCCCCcEEEccCCccccc
Q 013403 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (443)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 152 (443)
+++|++... .....+..+++|+.|++.+|.++..
T Consensus 95 L~~N~I~~l-~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 95 LSNNKISDL-NELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -TTS---SC-CCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CcCCcCCCh-HHhHHHHcCCCcceeeccCCcccch
Confidence 999998553 2333457889999999999988743
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=2.7e-12 Score=125.14 Aligned_cols=192 Identities=23% Similarity=0.299 Sum_probs=134.1
Q ss_pred CCCccEEeccCCCCCCcCC--CCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccc
Q 013403 6 IATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (443)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 83 (443)
+..-...||+.|++..++- +.|. .|+.+.|..|.+. .+|..++++..|++|||+.|+++ .+|..+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~-----------~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l 140 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFV-----------SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGL 140 (722)
T ss_pred ccchhhhhccccccccCchHHHHHH-----------HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhh
Confidence 3444556666666655432 2222 3366677778776 78888888888888888888888 777777
Q ss_pred cCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhh
Q 013403 84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163 (443)
Q Consensus 84 ~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 163 (443)
..|+ |+.|-+++|+++. +|..++.++.|..||.+.|.+... |... +.+.+|+.|.+..|++....++-.
T Consensus 141 C~lp-Lkvli~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~sl-psql--~~l~slr~l~vrRn~l~~lp~El~------ 209 (722)
T KOG0532|consen 141 CDLP-LKVLIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQSL-PSQL--GYLTSLRDLNVRRNHLEDLPEELC------ 209 (722)
T ss_pred hcCc-ceeEEEecCcccc-CCcccccchhHHHhhhhhhhhhhc-hHHh--hhHHHHHHHHHhhhhhhhCCHHHh------
Confidence 7765 7888888888877 777888778888888888887443 4444 778888888888888775433210
Q ss_pred hhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCC
Q 013403 164 MMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243 (443)
Q Consensus 164 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 243 (443)
.-.|..||+|.|++. .+|-.|.+|..|++|-|.+|.+.
T Consensus 210 ----------------------------------------~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq- 247 (722)
T KOG0532|consen 210 ----------------------------------------SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ- 247 (722)
T ss_pred ----------------------------------------CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-
Confidence 113667888888888 78888888888888888888887
Q ss_pred CCCccccCCC---CCCeeecCCC
Q 013403 244 DIPSSLRNLT---EVESLDLSSN 263 (443)
Q Consensus 244 ~~p~~~~~l~---~L~~L~Ls~N 263 (443)
..|..+.-.. --++|+..-+
T Consensus 248 SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 248 SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CChHHHHhccceeeeeeecchhc
Confidence 5565443222 2345555555
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=4.3e-11 Score=108.36 Aligned_cols=88 Identities=28% Similarity=0.287 Sum_probs=59.0
Q ss_pred hccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCC-CcccccCCCCCCeE
Q 013403 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH-IPTQLTSLKYLSVL 282 (443)
Q Consensus 204 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L 282 (443)
+++|+.||||+|.++ .+..+-..+-+.+.|+|++|.+.. -..++.+-+|..||+++|+|... --..+++++-|+.+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 456666777777666 444454566677778888887752 22345666777888888877632 22357788888888
Q ss_pred eCcCCcCcCCCCC
Q 013403 283 NLSYNQFEGPIPR 295 (443)
Q Consensus 283 ~Ls~N~l~g~iP~ 295 (443)
.|.+|+++ .+|+
T Consensus 405 ~L~~NPl~-~~vd 416 (490)
T KOG1259|consen 405 RLTGNPLA-GSVD 416 (490)
T ss_pred hhcCCCcc-ccch
Confidence 88899888 4444
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=1e-10 Score=101.19 Aligned_cols=126 Identities=29% Similarity=0.353 Sum_probs=50.2
Q ss_pred CCCCccEEeccCCCCCCcCCCCCC-CCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccc
Q 013403 5 GIATLYYLDLSNNFLTNIEYFPPT-NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~-~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 83 (443)
+..+++.|+|++|.|+.+-. +. .+ .+|+.|||++|.|+. +. .+..+++|++|++++|.++ .+++.+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~--L~~~l--------~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN--LGATL--------DKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGL 83 (175)
T ss_dssp -------------------S----TT---------TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHH
T ss_pred cccccccccccccccccccc--hhhhh--------cCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccch
Confidence 44568889999999976532 22 23 344889999999984 33 5778999999999999999 565555
Q ss_pred -cCCCCCcEEEcccCCCCCCC-chhhhCCCCCcEEEeecccCcCCCCC--CCCccCCCCCcEEEc
Q 013403 84 -VNCHHLEVLNVGNNQINDNF-PNWLEILPELQVLILRSNRFWGPIGE--NTTIVPFPSLRIIDL 144 (443)
Q Consensus 84 -~~l~~L~~L~Ls~N~l~~~~-p~~~~~L~~L~~L~L~~N~l~~~~~~--~~~~~~l~~L~~L~L 144 (443)
..+++|++|++++|+|...- -..+..+++|++|++.+|.++.. +. ...+..+|+|+.||-
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 46899999999999997632 24577899999999999998643 11 112356788888865
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.6e-11 Score=111.17 Aligned_cols=134 Identities=24% Similarity=0.304 Sum_probs=68.5
Q ss_pred CCCCccEEeccCCCCCCcCC----CCCCCCCEEECCCCCCCCEEECcCCccccc--ccccccCCCCCCEEEccCCcCCCC
Q 013403 5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSNLTHKVLDMRMNNFNGK--IPRKFVKSCNLTSLNLNGNRLEGP 78 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~ 78 (443)
++++|+...|.+..+..... ..|+++ +.||||.|-+..- +-.....+++|+.|+|+.|++...
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v-----------~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNV-----------RDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcc-----------eeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence 45667777777776654331 334444 5555555544421 112233566666666666665522
Q ss_pred CCccc-cCCCCCcEEEcccCCCCCCCchh-hhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCcccc
Q 013403 79 LPPSL-VNCHHLEVLNVGNNQINDNFPNW-LEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (443)
Q Consensus 79 ~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~-~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 151 (443)
..... ..++.|+.|.|+.|.++-..-.+ ...+|+|+.|++..|.. ..........+..|+.|||++|++-.
T Consensus 188 ~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~--~~~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 188 ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI--ILIKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc--cceecchhhhhhHHhhccccCCcccc
Confidence 22111 13556666666666665322222 23556666666666642 11122222445666666776666543
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1e-10 Score=106.00 Aligned_cols=120 Identities=22% Similarity=0.270 Sum_probs=88.6
Q ss_pred CCCCCCCEEECCCC------------CCCCEEECcCCcccc---ccccc--------------------ccCCCCCCEEE
Q 013403 25 FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNG---KIPRK--------------------FVKSCNLTSLN 69 (443)
Q Consensus 25 ~~~~~L~~L~Ls~n------------~~L~~LdLs~n~l~~---~~p~~--------------------~~~l~~L~~L~ 69 (443)
..|.+|..+.+|++ +.|+.+...+..++. ..|.. +.--+.|+++|
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD 290 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELD 290 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence 45778888888887 677777776654431 11211 11234689999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCcc
Q 013403 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (443)
Q Consensus 70 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l 149 (443)
|++|.++ .+.++..-.++++.|++|.|.|..+ +.+..+++|+.|||++|.++... ... ..+-+++.|.++.|.+
T Consensus 291 LS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~-Gwh--~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 291 LSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV-GWH--LKLGNIKTLKLAQNKI 364 (490)
T ss_pred ccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhh-hhH--hhhcCEeeeehhhhhH
Confidence 9999999 7888888899999999999999874 34888999999999999985532 222 3456777888888766
Q ss_pred c
Q 013403 150 T 150 (443)
Q Consensus 150 ~ 150 (443)
.
T Consensus 365 E 365 (490)
T KOG1259|consen 365 E 365 (490)
T ss_pred h
Confidence 5
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.92 E-value=7.5e-11 Score=109.00 Aligned_cols=146 Identities=24% Similarity=0.239 Sum_probs=75.1
Q ss_pred cCCCCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCccccc-------------ccccccCCCCCCEEEc
Q 013403 4 LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-------------IPRKFVKSCNLTSLNL 70 (443)
Q Consensus 4 ~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~-------------~p~~~~~l~~L~~L~L 70 (443)
+++++|++||||.|.+....+..+ ..| ++++..|++|.|.+|.+... ..+...+-+.|+++..
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l---~~l-l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGL---EEL-LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred hcCCceeEeeccccccCccchHHH---HHH-HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 356677777777777654433111 100 12224445555666555311 1111223345677777
Q ss_pred cCCcCCCCC----CccccCCCCCcEEEcccCCCCCC----CchhhhCCCCCcEEEeecccCcCCCCC--CCCccCCCCCc
Q 013403 71 NGNRLEGPL----PPSLVNCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILRSNRFWGPIGE--NTTIVPFPSLR 140 (443)
Q Consensus 71 ~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~L~~L~~L~L~~N~l~~~~~~--~~~~~~l~~L~ 140 (443)
..|++.... ...|...+.|+.+.++.|.|... +...+..+++|++||+.+|.++..-.. .-++..++.|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 777665322 23355566777777777766432 123455667777777777766432111 11234556666
Q ss_pred EEEccCCcccccc
Q 013403 141 IIDLSHNEFTGVL 153 (443)
Q Consensus 141 ~L~Ls~n~l~~~~ 153 (443)
.+++++|.+....
T Consensus 245 El~l~dcll~~~G 257 (382)
T KOG1909|consen 245 ELNLGDCLLENEG 257 (382)
T ss_pred eeccccccccccc
Confidence 7777666665443
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=6.9e-10 Score=78.97 Aligned_cols=60 Identities=28% Similarity=0.428 Sum_probs=36.1
Q ss_pred CCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCC
Q 013403 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI 99 (443)
Q Consensus 40 ~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 99 (443)
+|++|++++|+++...+..|.++++|++|++++|.++...|.+|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 446666666666644445666666666666666666655555566666666666666643
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=9.1e-10 Score=78.35 Aligned_cols=59 Identities=41% Similarity=0.541 Sum_probs=30.7
Q ss_pred CCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCc
Q 013403 230 LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ 288 (443)
Q Consensus 230 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 288 (443)
+|++|++++|+++...+..|.++++|++|++++|++....|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554334455555555555555555554444455555555555555554
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.81 E-value=1.5e-09 Score=108.53 Aligned_cols=103 Identities=30% Similarity=0.372 Sum_probs=45.7
Q ss_pred CEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecc
Q 013403 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (443)
Q Consensus 42 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N 121 (443)
+.++++.|.+. .+-..+..+.+|+.|++.+|.+. .+...+..+++|++|++++|.|+...+ +..++.|+.|++++|
T Consensus 75 ~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 75 KELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN 150 (414)
T ss_pred Hhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhheeccC
Confidence 33444444443 12223444445555555555554 222223445555555555555544321 334444555555555
Q ss_pred cCcCCCCCCCCccCCCCCcEEEccCCccccc
Q 013403 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (443)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 152 (443)
.++..-. +..++.|+.+++++|.++..
T Consensus 151 ~i~~~~~----~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 151 LISDISG----LESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred cchhccC----CccchhhhcccCCcchhhhh
Confidence 5432211 12244555555555554433
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.81 E-value=5.7e-10 Score=111.50 Aligned_cols=194 Identities=28% Similarity=0.296 Sum_probs=118.6
Q ss_pred CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEe
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L 118 (443)
++|+.|++.+|.|.+ +...+..+.+|++|++++|.|+... .+..++.|+.|++++|.|+.. ..+..++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence 455777888887773 3333667778888888888877432 245666688888888887763 34555777888888
Q ss_pred ecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchh
Q 013403 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (443)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (443)
++|.+...-+. . ...+.+++.+++++|.+........
T Consensus 170 ~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~~~~----------------------------------------- 206 (414)
T KOG0531|consen 170 SYNRIVDIEND-E-LSELISLEELDLGGNSIREIEGLDL----------------------------------------- 206 (414)
T ss_pred Ccchhhhhhhh-h-hhhccchHHHhccCCchhcccchHH-----------------------------------------
Confidence 88877554331 0 1456777777777777664322111
Q ss_pred hhHhhhccccEEEccCCcCCCCCchhcCCCC--CCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCC
Q 013403 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLN--LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL 276 (443)
Q Consensus 199 ~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 276 (443)
+..+..+++..|.++..-+ +..+. +|+.+++++|.+. .++..+..+..+..|++++|++...- .+...
T Consensus 207 -----~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~ 276 (414)
T KOG0531|consen 207 -----LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERL 276 (414)
T ss_pred -----HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--ccccc
Confidence 1222233555565542211 11222 3778888888886 34455667778888888888776432 23445
Q ss_pred CCCCeEeCcCCcCc
Q 013403 277 KYLSVLNLSYNQFE 290 (443)
Q Consensus 277 ~~L~~L~Ls~N~l~ 290 (443)
..+..+....|.+.
T Consensus 277 ~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 277 PKLSELWLNDNKLA 290 (414)
T ss_pred chHHHhccCcchhc
Confidence 55666667777665
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.73 E-value=1.6e-08 Score=108.56 Aligned_cols=88 Identities=22% Similarity=0.172 Sum_probs=47.2
Q ss_pred hccccEEEccCCcCCCCCchhcCC------CCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCC
Q 013403 204 LTIFMTIDLSSNKFQGGIPEVVGK------LNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK 277 (443)
Q Consensus 204 ~~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 277 (443)
+.+|+.|.+..+........+... ++++..+...++..- ..+.+..-.++|++|.+..+.....+.+....+.
T Consensus 716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~ 794 (889)
T KOG4658|consen 716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL 794 (889)
T ss_pred ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhh
Confidence 667788888777765322222111 112222222222211 1223333457888888888876666655566666
Q ss_pred CCCeEeCcCCcCcCC
Q 013403 278 YLSVLNLSYNQFEGP 292 (443)
Q Consensus 278 ~L~~L~Ls~N~l~g~ 292 (443)
.+..+-+..+.+.+.
T Consensus 795 ~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 795 ELKELILPFNKLEGL 809 (889)
T ss_pred hcccEEecccccccc
Confidence 666666666666644
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=2.6e-08 Score=106.92 Aligned_cols=236 Identities=19% Similarity=0.240 Sum_probs=134.0
Q ss_pred CCCCEEECcCCc--ccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEE
Q 013403 39 LTHKVLDMRMNN--FNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVL 116 (443)
Q Consensus 39 ~~L~~LdLs~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L 116 (443)
+.|+.|-+..|. +....+..|..++.|++|||++|.=-+.+|..++++-+|++|++++..+.. +|..+.++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhhee
Confidence 345666666664 443333456778888999998876666888888888888888988888886 88888888888888
Q ss_pred EeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccc
Q 013403 117 ILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGI 196 (443)
Q Consensus 117 ~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (443)
++..+.....++... ..+++|++|.+........ ......+..|..+...+....... . ...+
T Consensus 624 nl~~~~~l~~~~~i~--~~L~~Lr~L~l~~s~~~~~--~~~l~el~~Le~L~~ls~~~~s~~------~-------~e~l 686 (889)
T KOG4658|consen 624 NLEVTGRLESIPGIL--LELQSLRVLRLPRSALSND--KLLLKELENLEHLENLSITISSVL------L-------LEDL 686 (889)
T ss_pred ccccccccccccchh--hhcccccEEEeeccccccc--hhhHHhhhcccchhhheeecchhH------h-------Hhhh
Confidence 888876545554433 5688888888876542211 111333333333332221110000 0 0000
Q ss_pred hhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccC------CCCCCeeecCCCcCCCCCc
Q 013403 197 DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRN------LTEVESLDLSSNMLVGHIP 270 (443)
Q Consensus 197 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~~~p 270 (443)
....+.....+.+.+.++... ..+..+..+.+|+.|.+.++.+.......... ++++..+...++... ..+
T Consensus 687 -~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l 763 (889)
T KOG4658|consen 687 -LGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDL 763 (889)
T ss_pred -hhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-ccc
Confidence 000111111222332222222 34555778899999999998886433333222 223333333333222 223
Q ss_pred ccccCCCCCCeEeCcCCcCc-CCCCC
Q 013403 271 TQLTSLKYLSVLNLSYNQFE-GPIPR 295 (443)
Q Consensus 271 ~~~~~l~~L~~L~Ls~N~l~-g~iP~ 295 (443)
.+..-.++|+.|.+..+... ..+|.
T Consensus 764 ~~~~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 764 TWLLFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred chhhccCcccEEEEecccccccCCCH
Confidence 33345688999999876554 44443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=8.2e-09 Score=93.72 Aligned_cols=82 Identities=21% Similarity=0.204 Sum_probs=47.5
Q ss_pred hccccEEEccCCc--CCCCC-chhcCCCCCCCEEecCCCcC-CCCCCccccCCCCCCeeecCCCcCCCCCccc---ccCC
Q 013403 204 LTIFMTIDLSSNK--FQGGI-PEVVGKLNLLKGLNISHNNL-TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ---LTSL 276 (443)
Q Consensus 204 ~~~L~~L~Ls~N~--l~~~~-p~~l~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l 276 (443)
-+.++.|++++.. +.... ..-...+++|.+||||.|.. +...-..|.+++.|++|.++.|.. .+|.. +...
T Consensus 285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~ 362 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSK 362 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccC
Confidence 4556666666543 21112 22234677788888877643 322233456677788888877764 34443 3556
Q ss_pred CCCCeEeCcCC
Q 013403 277 KYLSVLNLSYN 287 (443)
Q Consensus 277 ~~L~~L~Ls~N 287 (443)
++|.+||+.++
T Consensus 363 psl~yLdv~g~ 373 (419)
T KOG2120|consen 363 PSLVYLDVFGC 373 (419)
T ss_pred cceEEEEeccc
Confidence 77777777653
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=4.2e-08 Score=98.89 Aligned_cols=106 Identities=28% Similarity=0.326 Sum_probs=68.1
Q ss_pred hhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCc-cccCCCCCCeeecCCCcCCCCCcccccCCCCCCe
Q 013403 203 ILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPS-SLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV 281 (443)
Q Consensus 203 ~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 281 (443)
.++.++.|+|++|+++... .+..++.|++|||++|.+. .+|. ...++ .|..|.+++|.++... .+.++++|+.
T Consensus 185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL~--gie~LksL~~ 258 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTLR--GIENLKSLYG 258 (1096)
T ss_pred HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhhh--hHHhhhhhhc
Confidence 3667788888888887432 6777888888888888887 3443 22333 3888888888776332 3567888888
Q ss_pred EeCcCCcCcCCCC--CCCCCCCcCCCccCCCCCCC
Q 013403 282 LNLSYNQFEGPIP--RGSQFNTFPNDSYVGNSGLC 314 (443)
Q Consensus 282 L~Ls~N~l~g~iP--~~~~~~~~~~~~~~gn~~lc 314 (443)
||+++|-+++--. ....+..+....+.|||-.|
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8888887764211 11122233344567777555
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.1e-08 Score=90.05 Aligned_cols=62 Identities=23% Similarity=0.226 Sum_probs=47.7
Q ss_pred hhhccccEEEccCCc-CCCCCchhcCCCCCCCEEecCCCcCCCCCCcc---ccCCCCCCeeecCCCcC
Q 013403 202 RILTIFMTIDLSSNK-FQGGIPEVVGKLNLLKGLNISHNNLTGDIPSS---LRNLTEVESLDLSSNML 265 (443)
Q Consensus 202 ~~~~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l 265 (443)
+.+++|..||||.|. ++...-..|.+++.|++|.++.|.. .+|.. +...++|.+||+.++--
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 347899999999875 5554555677899999999999874 56654 56788999999877643
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=1.3e-06 Score=79.71 Aligned_cols=223 Identities=17% Similarity=0.208 Sum_probs=116.2
Q ss_pred CEEECcCCcccccc-ccccc-CCCCCCEEEccCCcCCC--CCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEE
Q 013403 42 KVLDMRMNNFNGKI-PRKFV-KSCNLTSLNLNGNRLEG--PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117 (443)
Q Consensus 42 ~~LdLs~n~l~~~~-p~~~~-~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~ 117 (443)
+.|.+.++.|-..- ...|+ ..+.++.+||.+|.++. .+...+.+++.|++|+++.|.+...+-..=..+.+|++|.
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV 127 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence 45555555554211 12232 35677888888888772 2233355788888888888887653321112456788888
Q ss_pred eecccCcCCCCCCCCccCCCCCcEEEccCCccccccch-----hhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEE
Q 013403 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT-----GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILT 192 (443)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (443)
|.+..+.=.... ..+..+|.++.|++|.|++.-.... .+......+....+.-. .+.
T Consensus 128 LNgT~L~w~~~~-s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~-----------~w~------ 189 (418)
T KOG2982|consen 128 LNGTGLSWTQST-SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ-----------LWL------ 189 (418)
T ss_pred EcCCCCChhhhh-hhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH-----------HHH------
Confidence 877665321111 1235677778888888754322111 11111111100000000 000
Q ss_pred eccchhhhHhhhccccEEEccCCcCCCC-CchhcCCCCCCCEEecCCCcCCCC-CCccccCCCCCCeeecCCCcCCCCCc
Q 013403 193 IKGIDIKMERILTIFMTIDLSSNKFQGG-IPEVVGKLNLLKGLNISHNNLTGD-IPSSLRNLTEVESLDLSSNMLVGHIP 270 (443)
Q Consensus 193 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p 270 (443)
-.....+.++++..+-+..|.+... ..+.+..++.+.-|+|+.|+|... .-+.+.++++|.-|.+++|.++..+.
T Consensus 190 ---~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 190 ---NKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred ---HHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 0001123356666666666655422 223344566677788888877532 23456677788888888887765432
Q ss_pred c------cccCCCCCCeEeCc
Q 013403 271 T------QLTSLKYLSVLNLS 285 (443)
Q Consensus 271 ~------~~~~l~~L~~L~Ls 285 (443)
. .++.+++++.|+=+
T Consensus 267 ~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 267 GGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCcceEEEEeeccceEEecCc
Confidence 2 24566666666543
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=1.1e-07 Score=76.81 Aligned_cols=111 Identities=25% Similarity=0.314 Sum_probs=85.3
Q ss_pred ccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeC
Q 013403 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL 284 (443)
Q Consensus 205 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 284 (443)
..|+.++|++|.+....+..-..++..+.||+++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|..||.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 45778999999999554444456779999999999998 78888999999999999999998 55666777999999999
Q ss_pred cCCcCcCCCCCCCCCCCcCCCccCCCCCCCCCCCCCCCC
Q 013403 285 SYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCN 323 (443)
Q Consensus 285 s~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~p~~~~C~ 323 (443)
.+|.+. .||......+.....-.|| .|+...|.
T Consensus 131 ~~na~~-eid~dl~~s~~~al~~lgn-----epl~~~~~ 163 (177)
T KOG4579|consen 131 PENARA-EIDVDLFYSSLPALIKLGN-----EPLGDETK 163 (177)
T ss_pred CCCccc-cCcHHHhccccHHHHHhcC-----CcccccCc
Confidence 999988 7777644444443333344 45555554
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.13 E-value=2e-07 Score=94.14 Aligned_cols=104 Identities=24% Similarity=0.225 Sum_probs=44.9
Q ss_pred CCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEee
Q 013403 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (443)
Q Consensus 40 ~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~ 119 (443)
.|...+.++|.+. ....++.-++.|+.|+|++|+++. .. .+..|++|++|||+.|.+.. +|..-..--+|+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhcc-ccccchhhhhheeeeec
Confidence 3444444444444 233334444445555555555542 11 44445555555555555543 22211111125555555
Q ss_pred cccCcCCCCCCCCccCCCCCcEEEccCCcccc
Q 013403 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (443)
Q Consensus 120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 151 (443)
+|.++... .+.++.+|+.||+++|-+.+
T Consensus 241 nN~l~tL~----gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 241 NNALTTLR----GIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred ccHHHhhh----hHHhhhhhhccchhHhhhhc
Confidence 55443221 11344555555555554443
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=2.3e-06 Score=77.08 Aligned_cols=111 Identities=21% Similarity=0.320 Sum_probs=70.0
Q ss_pred CCCEEECcCCcccccccc----cccCCCCCCEEEccCCcCC---CCCC-------ccccCCCCCcEEEcccCCCCCCCch
Q 013403 40 THKVLDMRMNNFNGKIPR----KFVKSCNLTSLNLNGNRLE---GPLP-------PSLVNCHHLEVLNVGNNQINDNFPN 105 (443)
Q Consensus 40 ~L~~LdLs~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~---~~~p-------~~~~~l~~L~~L~Ls~N~l~~~~p~ 105 (443)
.++.+|||+|-|...-.. .+.+-.+|+..+++.-... ..++ .++..|++|+..+||+|.+....|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 347788888877644333 3345567777777653221 1222 3455788888888888888776665
Q ss_pred hh----hCCCCCcEEEeecccCcCCCCC-CCC-----------ccCCCCCcEEEccCCcccc
Q 013403 106 WL----EILPELQVLILRSNRFWGPIGE-NTT-----------IVPFPSLRIIDLSHNEFTG 151 (443)
Q Consensus 106 ~~----~~L~~L~~L~L~~N~l~~~~~~-~~~-----------~~~l~~L~~L~Ls~n~l~~ 151 (443)
.+ .+-+.|++|.+++|.+ |.+.. .++ ..+-|.|+......|++..
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 43 4567788888888876 22222 110 1345778888888888763
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=5.2e-06 Score=54.28 Aligned_cols=35 Identities=46% Similarity=0.739 Sum_probs=14.1
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCC
Q 013403 65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN 100 (443)
Q Consensus 65 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 100 (443)
|++|++++|+++ .+|..+++|++|++|++++|.++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 33333444444444444444443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=7.1e-06 Score=74.97 Aligned_cols=219 Identities=19% Similarity=0.180 Sum_probs=129.1
Q ss_pred cccCCCCCCEEEccCCcCCCCCC-cccc-CCCCCcEEEcccCCCCCC--CchhhhCCCCCcEEEeecccCcCCCCCCCCc
Q 013403 58 KFVKSCNLTSLNLNGNRLEGPLP-PSLV-NCHHLEVLNVGNNQINDN--FPNWLEILPELQVLILRSNRFWGPIGENTTI 133 (443)
Q Consensus 58 ~~~~l~~L~~L~L~~n~l~~~~p-~~~~-~l~~L~~L~Ls~N~l~~~--~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~ 133 (443)
.+.....++.|.+.++.+...-. ..|+ .++.++.+||..|.|+.. +-..+.+||.|++|+++.|++...+...-
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-- 117 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-- 117 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--
Confidence 33344456677777766652211 1232 468899999999999873 23446689999999999999976654432
Q ss_pred cCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEcc
Q 013403 134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLS 213 (443)
Q Consensus 134 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 213 (443)
....+|+.|-+.+..+.-.....+...++.++.++....+...+ .-. +....+..+.+..|.+.
T Consensus 118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~---n~D-------------d~c~e~~s~~v~tlh~~ 181 (418)
T KOG2982|consen 118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQL---NLD-------------DNCIEDWSTEVLTLHQL 181 (418)
T ss_pred ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhh---ccc-------------cccccccchhhhhhhcC
Confidence 45678999999888877655555566665555443311100000 000 00000001122222222
Q ss_pred CCcCCC--CCchhcCCCCCCCEEecCCCcCCCCC-CccccCCCCCCeeecCCCcCCCC-CcccccCCCCCCeEeCcCCcC
Q 013403 214 SNKFQG--GIPEVVGKLNLLKGLNISHNNLTGDI-PSSLRNLTEVESLDLSSNMLVGH-IPTQLTSLKYLSVLNLSYNQF 289 (443)
Q Consensus 214 ~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l 289 (443)
.|.... ..-..-.-++++..+-+..|.++... ...+..++.+..|+|+.|+|... .-+.+..++.|..|.+++|++
T Consensus 182 ~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 182 PCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred CcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 221100 00001123467777888888776432 34566778888999999998743 234577889999999999998
Q ss_pred cCCCC
Q 013403 290 EGPIP 294 (443)
Q Consensus 290 ~g~iP 294 (443)
...+-
T Consensus 262 ~d~l~ 266 (418)
T KOG2982|consen 262 SDPLR 266 (418)
T ss_pred ccccc
Confidence 75443
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=8.3e-06 Score=53.33 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=31.3
Q ss_pred CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCC
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (443)
++|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46799999999998 57777999999999999999998
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.93 E-value=5.5e-06 Score=74.76 Aligned_cols=95 Identities=21% Similarity=0.235 Sum_probs=68.7
Q ss_pred ccCCCCCCEEEccCCcCCCCC----CccccCCCCCcEEEcccCCCCC---CC-------chhhhCCCCCcEEEeecccCc
Q 013403 59 FVKSCNLTSLNLNGNRLEGPL----PPSLVNCHHLEVLNVGNNQIND---NF-------PNWLEILPELQVLILRSNRFW 124 (443)
Q Consensus 59 ~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~---~~-------p~~~~~L~~L~~L~L~~N~l~ 124 (443)
+..+..++.++||+|.+...- ...+.+-.+|+..++++-.... .+ -+++-++|.|+..+||+|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 345788999999999988433 3345667889999888643321 12 234567899999999999997
Q ss_pred CCCCCCC--CccCCCCCcEEEccCCcccccc
Q 013403 125 GPIGENT--TIVPFPSLRIIDLSHNEFTGVL 153 (443)
Q Consensus 125 ~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~ 153 (443)
...|... .+...+.|.+|.+++|.+....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a 136 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIA 136 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence 6666543 2356688999999999876443
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.85 E-value=8.6e-07 Score=71.78 Aligned_cols=104 Identities=26% Similarity=0.377 Sum_probs=61.1
Q ss_pred CEEECcCCccccccccc---ccCCCCCCEEEccCCcCCCCCCccccC-CCCCcEEEcccCCCCCCCchhhhCCCCCcEEE
Q 013403 42 KVLDMRMNNFNGKIPRK---FVKSCNLTSLNLNGNRLEGPLPPSLVN-CHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117 (443)
Q Consensus 42 ~~LdLs~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~ 117 (443)
..+||+++.+- -+++. +.+...|+..+|++|.+. ..|..|.. .+.+++|+|++|.|+. +|..+..++.|+.|+
T Consensus 30 h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 30 HFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLN 106 (177)
T ss_pred hhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcc
Confidence 44566666553 23333 234455666677777776 55555543 3466677777777766 666677777777777
Q ss_pred eecccCcCCCCCCCCccCCCCCcEEEccCCcccc
Q 013403 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (443)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 151 (443)
++.|.+... |..+ ..+.++-.||..+|....
T Consensus 107 l~~N~l~~~-p~vi--~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 107 LRFNPLNAE-PRVI--APLIKLDMLDSPENARAE 137 (177)
T ss_pred cccCccccc-hHHH--HHHHhHHHhcCCCCcccc
Confidence 777766432 3333 345666666666666553
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=9.3e-05 Score=72.16 Aligned_cols=28 Identities=32% Similarity=0.661 Sum_probs=18.9
Q ss_pred hhHHHHHHH--hhccccceeeccceeeecc
Q 013403 375 PRWLVRMIE--KYQSNKEFYTHGMELSCRS 402 (443)
Q Consensus 375 ~~w~~~~~~--~~~~~~~~~~~~~~~~~~~ 402 (443)
-||.+|..+ +......||..|.+..++-
T Consensus 380 lr~~yr~~~~~~~~~~~~f~~~g~~~~~~~ 409 (426)
T PRK15386 380 LRWIYRNKDNPQVKKNVKFYLEGKEISAEE 409 (426)
T ss_pred hhHHHhccchHhhhhceeeccCCCccCchh
Confidence 378777655 4556678888887665543
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=1.8e-05 Score=83.30 Aligned_cols=118 Identities=20% Similarity=0.235 Sum_probs=83.1
Q ss_pred CCCCEEECcCCccccc-ccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCC-CCchhhhCCCCCcEE
Q 013403 39 LTHKVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVL 116 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~L~~L~~L 116 (443)
|.|+.|.+++-.+... .-....++++|..||+|+++++.. ..++++++|++|.+.+=.+.. ..-..+..|++|++|
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 6777778877666432 234455788999999999998843 668899999999988877764 122356789999999
Q ss_pred EeecccCcCCC--CCCC--CccCCCCCcEEEccCCccccccchhhH
Q 013403 117 ILRSNRFWGPI--GENT--TIVPFPSLRIIDLSHNEFTGVLLTGYL 158 (443)
Q Consensus 117 ~L~~N~l~~~~--~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 158 (443)
|+|..+..... .... ....+|+||.||.|++.+.....+...
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence 99987654332 0000 113589999999999888766554443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=8.2e-05 Score=64.50 Aligned_cols=107 Identities=23% Similarity=0.224 Sum_probs=79.3
Q ss_pred CCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCC-chhhhCCCCCcEEEe
Q 013403 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF-PNWLEILPELQVLIL 118 (443)
Q Consensus 40 ~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~L~~L~~L~L 118 (443)
+...+||++|++.. -+.|..+++|.+|.|.+|+|+..-|.--.-+++|+.|.|.+|.|.... -.-+..+|.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 45789999999862 235678899999999999999555544445688999999999986521 122567899999999
Q ss_pred ecccCcCCCC-CCCCccCCCCCcEEEccCCc
Q 013403 119 RSNRFWGPIG-ENTTIVPFPSLRIIDLSHNE 148 (443)
Q Consensus 119 ~~N~l~~~~~-~~~~~~~l~~L~~L~Ls~n~ 148 (443)
-+|..+..-. ....+..+|+|+.||+..-.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9998754321 11245789999999997643
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.59 E-value=0.00011 Score=63.84 Aligned_cols=84 Identities=27% Similarity=0.407 Sum_probs=50.7
Q ss_pred CCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEE
Q 013403 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143 (443)
Q Consensus 64 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 143 (443)
+...+||++|.+. .+ ..|..++.|.+|.+++|.|+.+-|.--.-+++|+.|.+.+|++... .+...+..+|.|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-GDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-hhcchhccCCccceee
Confidence 4566777777665 22 2455667777777777777765555444556677777777766321 1112235666777777
Q ss_pred ccCCccc
Q 013403 144 LSHNEFT 150 (443)
Q Consensus 144 Ls~n~l~ 150 (443)
+-+|..+
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 7666654
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=6.1e-05 Score=79.29 Aligned_cols=118 Identities=21% Similarity=0.199 Sum_probs=88.3
Q ss_pred CCccEEeccCCCCCCcC-C----CCCCCCCEEECCCC--------------CCCCEEECcCCcccccccccccCCCCCCE
Q 013403 7 ATLYYLDLSNNFLTNIE-Y----FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~-~----~~~~~L~~L~Ls~n--------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~ 67 (443)
.+|++||+++...-... + ..+++|+.|.+++- ++|..||+|+.+++.. ..+..+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 47889999886543222 1 66899999988873 8999999999999843 67789999999
Q ss_pred EEccCCcCCC-CCCccccCCCCCcEEEcccCCCCCCC--ch----hhhCCCCCcEEEeecccCcCC
Q 013403 68 LNLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNF--PN----WLEILPELQVLILRSNRFWGP 126 (443)
Q Consensus 68 L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~----~~~~L~~L~~L~L~~N~l~~~ 126 (443)
|.+.+=.+.. ..-..+.++++|+.||+|........ .. .-..||+|+.||.|++.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 9999876662 12234678999999999987665422 11 113589999999999877543
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.41 E-value=0.00049 Score=67.26 Aligned_cols=121 Identities=18% Similarity=0.260 Sum_probs=72.2
Q ss_pred CCCCccEEeccCCCCCCcCCCCCCCCCEEECCCC-----------CCCCEEECcCC-cccccccccccCCCCCCEEEccC
Q 013403 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-----------LTHKVLDMRMN-NFNGKIPRKFVKSCNLTSLNLNG 72 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n-----------~~L~~LdLs~n-~l~~~~p~~~~~l~~L~~L~L~~ 72 (443)
.+.+++.|++++|.++..+ .-..+|+.|+++++ ++|++|++++| .+. .+|. +|+.|++++
T Consensus 50 ~~~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~ 121 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-GLPE------SVRSLEIKG 121 (426)
T ss_pred HhcCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc-cccc------ccceEEeCC
Confidence 3578999999999888774 34456888888775 46777777777 444 4443 366666666
Q ss_pred CcCC--CCCCccccCCCCCcEEEcccCC-CCC-CCchhhhCC-CCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCC
Q 013403 73 NRLE--GPLPPSLVNCHHLEVLNVGNNQ-IND-NFPNWLEIL-PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHN 147 (443)
Q Consensus 73 n~l~--~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~L-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n 147 (443)
+... +.+|. +|+.|.+.++. ... ..|. .+ ++|++|++++|.... .|..+ ..+|+.|+++.+
T Consensus 122 n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~-LP~~L----P~SLk~L~ls~n 187 (426)
T PRK15386 122 SATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII-LPEKL----PESLQSITLHIE 187 (426)
T ss_pred CCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCccc-Ccccc----cccCcEEEeccc
Confidence 5543 13333 34555553322 110 0111 12 478888888876532 23222 257888888766
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.0005 Score=62.12 Aligned_cols=101 Identities=26% Similarity=0.258 Sum_probs=62.6
Q ss_pred CEEECcCCcccccccccccCCCCCCEEEccCC--cCCCCCCccccCCCCCcEEEcccCCCCCC-CchhhhCCCCCcEEEe
Q 013403 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN--RLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLIL 118 (443)
Q Consensus 42 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~L~~L~~L~L 118 (443)
+.|++.+..++.. ..|-.|++|++|.++.| ++.+.++-....+++|++|++++|+|... .-..+..+.+|..|++
T Consensus 46 e~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 46 ELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred hhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 4455555555421 23456778889999888 66666665556678899999999988741 0112456677888888
Q ss_pred ecccCcCCCCC-CCCccCCCCCcEEEc
Q 013403 119 RSNRFWGPIGE-NTTIVPFPSLRIIDL 144 (443)
Q Consensus 119 ~~N~l~~~~~~-~~~~~~l~~L~~L~L 144 (443)
.+|..+..-.- ...+.-+++|++||-
T Consensus 124 ~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 124 FNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred ccCCccccccHHHHHHHHhhhhccccc
Confidence 88876542110 112345677776654
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.0013 Score=59.45 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=68.3
Q ss_pred ccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccC--CCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCC
Q 013403 55 IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN--QINDNFPNWLEILPELQVLILRSNRFWGPIGENTT 132 (443)
Q Consensus 55 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~ 132 (443)
+..-.-.+..|+.|++.+..++. . ..|-.+++|+.|.++.| ++.+-++.-...+|+|+++++++|++.. +...-.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccch
Confidence 44455566778888888877762 2 24567889999999999 6666666666677999999999999853 222123
Q ss_pred ccCCCCCcEEEccCCcccc
Q 013403 133 IVPFPSLRIIDLSHNEFTG 151 (443)
Q Consensus 133 ~~~l~~L~~L~Ls~n~l~~ 151 (443)
+..+.+|..||+.+|..+.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhcchhhhhcccCCccc
Confidence 4677888899999887765
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.46 E-value=0.0091 Score=48.87 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=50.6
Q ss_pred CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEe
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L 118 (443)
++|+.+.+.. .+......+|.++.+|+.+.+.++ ++.....+|.++++|+.+.+.+ .+.......|..+++|+.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 3456666653 455444566777777888887765 5544555677777788888765 444334456667778888887
Q ss_pred ecccCcCCCCCCCCccCCCCCcEEEccC
Q 013403 119 RSNRFWGPIGENTTIVPFPSLRIIDLSH 146 (443)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 146 (443)
..+ +....... +.+. .++.+.+..
T Consensus 89 ~~~-~~~i~~~~--f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 89 PSN-ITEIGSSS--FSNC-NLKEINIPS 112 (129)
T ss_dssp TTT--BEEHTTT--TTT--T--EEE-TT
T ss_pred Ccc-ccEEchhh--hcCC-CceEEEECC
Confidence 654 32222222 2554 777777654
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.20 E-value=0.007 Score=49.56 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=59.9
Q ss_pred CCCCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCcccc
Q 013403 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (443)
++++|+.+.+.. .++.+....+.+.. +|+.+++..+ +......+|.++.+|+.+.+.+ .+.......|.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~--------~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCT--------SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-T--------T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred CCCCCCEEEECC-CeeEeChhhccccc--------cccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 566788888774 56555444444443 3478888775 6645556788888899999976 55435556788
Q ss_pred CCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeec
Q 013403 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (443)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~ 120 (443)
++++|+.+++..+ +.......|... +|+.+.+.+
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 8999999999776 655455667777 899988875
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.00033 Score=63.77 Aligned_cols=97 Identities=27% Similarity=0.374 Sum_probs=63.7
Q ss_pred CEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCch--hhhCCCCCcEEEee
Q 013403 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPN--WLEILPELQVLILR 119 (443)
Q Consensus 42 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~L~~L~~L~L~ 119 (443)
+.|++.++.++.+ ....+|+.|++|.|+-|+++..- .+..|++|++|+|..|.|.. +.. -+.++++|+.|.|.
T Consensus 22 kKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 22 KKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhc
Confidence 5666777766521 13346788888888888887433 36788888888888888876 332 24577888888888
Q ss_pred cccCcCCCCCCC---CccCCCCCcEEE
Q 013403 120 SNRFWGPIGENT---TIVPFPSLRIID 143 (443)
Q Consensus 120 ~N~l~~~~~~~~---~~~~l~~L~~L~ 143 (443)
.|.-.|.-+... .+..+|+|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 887655544332 224566666664
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.96 E-value=0.00021 Score=68.41 Aligned_cols=65 Identities=15% Similarity=0.011 Sum_probs=31.9
Q ss_pred ccEEeccCCCCCCcCC-----CCCCCCCEEECCCC---------------CCCCEEECcCC-cccccccc-cccCCCCCC
Q 013403 9 LYYLDLSNNFLTNIEY-----FPPTNMTQLNFDSN---------------LTHKVLDMRMN-NFNGKIPR-KFVKSCNLT 66 (443)
Q Consensus 9 L~~L~Ls~n~l~~~~~-----~~~~~L~~L~Ls~n---------------~~L~~LdLs~n-~l~~~~p~-~~~~l~~L~ 66 (443)
|+.|.+.+..=.+.-+ ..++++++|++.++ ..|++|+|..+ .++...-+ --.++++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 4455555544333322 34555555555554 45566666552 34332222 123456666
Q ss_pred EEEccCC
Q 013403 67 SLNLNGN 73 (443)
Q Consensus 67 ~L~L~~n 73 (443)
+|+++++
T Consensus 220 ~lNlSwc 226 (483)
T KOG4341|consen 220 YLNLSWC 226 (483)
T ss_pred HhhhccC
Confidence 6666655
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.87 E-value=0.0037 Score=34.01 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=10.1
Q ss_pred CCEEECcCCccccccccccc
Q 013403 41 HKVLDMRMNNFNGKIPRKFV 60 (443)
Q Consensus 41 L~~LdLs~n~l~~~~p~~~~ 60 (443)
|++||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554444
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.00065 Score=61.88 Aligned_cols=87 Identities=30% Similarity=0.301 Sum_probs=53.9
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcE
Q 013403 62 SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRI 141 (443)
Q Consensus 62 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 141 (443)
+.+.+.|++-|+.++ .+. ....|+.|++|.|+-|+|+..-| +..+++|+.|+|..|.+... .+..-+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sl-dEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESL-DELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccH-HHHHHHhcCchhhh
Confidence 456667777777776 222 23467777777777777776433 56677777777777766332 22222356677777
Q ss_pred EEccCCcccccc
Q 013403 142 IDLSHNEFTGVL 153 (443)
Q Consensus 142 L~Ls~n~l~~~~ 153 (443)
|-|..|...|..
T Consensus 93 LWL~ENPCc~~a 104 (388)
T KOG2123|consen 93 LWLDENPCCGEA 104 (388)
T ss_pred HhhccCCccccc
Confidence 777776665543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.42 E-value=0.0049 Score=33.51 Aligned_cols=21 Identities=48% Similarity=0.789 Sum_probs=12.0
Q ss_pred CCCEEEccCCcCCCCCCccccC
Q 013403 64 NLTSLNLNGNRLEGPLPPSLVN 85 (443)
Q Consensus 64 ~L~~L~L~~n~l~~~~p~~~~~ 85 (443)
+|++|++++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 55555543
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.53 E-value=0.0037 Score=60.16 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=52.5
Q ss_pred CCCCEEECCCC---------------CCCCEEECcCCc-ccccccccc-cCCCCCCEEEccCC-cCCCCCCc-cccCCCC
Q 013403 28 TNMTQLNFDSN---------------LTHKVLDMRMNN-FNGKIPRKF-VKSCNLTSLNLNGN-RLEGPLPP-SLVNCHH 88 (443)
Q Consensus 28 ~~L~~L~Ls~n---------------~~L~~LdLs~n~-l~~~~p~~~-~~l~~L~~L~L~~n-~l~~~~p~-~~~~l~~ 88 (443)
.-|+.|.+.++ +++++|++.++. ++...-..+ ..+.+|++|++..+ .+|...-. -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 34666666665 778888777774 332222222 35677888888773 44432222 2236788
Q ss_pred CcEEEcccCC-CCCCC-chhhhCCCCCcEEEeecc
Q 013403 89 LEVLNVGNNQ-INDNF-PNWLEILPELQVLILRSN 121 (443)
Q Consensus 89 L~~L~Ls~N~-l~~~~-p~~~~~L~~L~~L~L~~N 121 (443)
|++++++-+. |++.- .....+...++.+.+.++
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 8888888653 33311 122335555666655543
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.02 E-value=0.00023 Score=71.81 Aligned_cols=110 Identities=21% Similarity=0.215 Sum_probs=54.0
Q ss_pred CCEEECcCCccccc----ccccccCCCCCCEEEccCCcCCCCCCc----cccCC-CCCcEEEcccCCCCCC----Cchhh
Q 013403 41 HKVLDMRMNNFNGK----IPRKFVKSCNLTSLNLNGNRLEGPLPP----SLVNC-HHLEVLNVGNNQINDN----FPNWL 107 (443)
Q Consensus 41 L~~LdLs~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l-~~L~~L~Ls~N~l~~~----~p~~~ 107 (443)
+..|+|.+|.+... +...+.....|+.|++++|.+.+.--. .+... ..|++|++..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 35555666655432 223334455666666666666522111 11122 3455566666665543 23344
Q ss_pred hCCCCCcEEEeecccCcCC----CCCCC--CccCCCCCcEEEccCCccc
Q 013403 108 EILPELQVLILRSNRFWGP----IGENT--TIVPFPSLRIIDLSHNEFT 150 (443)
Q Consensus 108 ~~L~~L~~L~L~~N~l~~~----~~~~~--~~~~l~~L~~L~Ls~n~l~ 150 (443)
.....++.++++.|.+... ++... .+....++++|.+.+|.++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 4555666666666665210 01111 0123556777777777666
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.62 E-value=0.00044 Score=69.81 Aligned_cols=86 Identities=26% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCEEEccCCcCCCCCC----ccccCCCCCcEEEcccCCCCCCCchhhh----CC-CCCcEEEeecccCcCCCCCCC--Cc
Q 013403 65 LTSLNLNGNRLEGPLP----PSLVNCHHLEVLNVGNNQINDNFPNWLE----IL-PELQVLILRSNRFWGPIGENT--TI 133 (443)
Q Consensus 65 L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----~L-~~L~~L~L~~N~l~~~~~~~~--~~ 133 (443)
+..|.|.+|.+..... ..+.....|+.|++++|.+.+..-..+. .. ..+++|++..+.+++.-...+ .+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7788888888875433 3455678888888888888743222222 22 346677777777654322211 22
Q ss_pred cCCCCCcEEEccCCccc
Q 013403 134 VPFPSLRIIDLSHNEFT 150 (443)
Q Consensus 134 ~~l~~L~~L~Ls~n~l~ 150 (443)
.....++.+|++.|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLI 185 (478)
T ss_pred hcccchhHHHHHhcccc
Confidence 44677888888888775
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.61 E-value=0.0013 Score=58.37 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=37.2
Q ss_pred CEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecc
Q 013403 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (443)
Q Consensus 42 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N 121 (443)
+.||++.|.+. ..-..|..++.|+.|+++.|.+. ..|..++....++.+++.+|..+. .|..++.++.++++++-.|
T Consensus 45 tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 45 TVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred eeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchhhhccC
Confidence 44555555443 22233444444555555555544 445555555555555554444444 4444455555555544444
Q ss_pred c
Q 013403 122 R 122 (443)
Q Consensus 122 ~ 122 (443)
.
T Consensus 122 ~ 122 (326)
T KOG0473|consen 122 E 122 (326)
T ss_pred c
Confidence 4
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.12 E-value=0.096 Score=26.37 Aligned_cols=13 Identities=69% Similarity=0.682 Sum_probs=4.9
Q ss_pred CccEEeccCCCCC
Q 013403 8 TLYYLDLSNNFLT 20 (443)
Q Consensus 8 ~L~~L~Ls~n~l~ 20 (443)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555543
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.99 E-value=0.035 Score=56.41 Aligned_cols=111 Identities=24% Similarity=0.159 Sum_probs=63.5
Q ss_pred CCCCEEECcCCccccc--ccccccCCCCCCEEEccCC-cCCCCCC----ccccCCCCCcEEEcccCC-CCCCCchhhh-C
Q 013403 39 LTHKVLDMRMNNFNGK--IPRKFVKSCNLTSLNLNGN-RLEGPLP----PSLVNCHHLEVLNVGNNQ-INDNFPNWLE-I 109 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~p----~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~-~ 109 (443)
+.|+.|.+.++.-... .-......++|+.|+++++ ......+ .....+++|+.|+++.+. +++..-..+. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 5566666666522212 2234456778888888763 1111111 234456888888888877 6554434444 3
Q ss_pred CCCCcEEEeeccc-CcCCCCCCCCccCCCCCcEEEccCCccc
Q 013403 110 LPELQVLILRSNR-FWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (443)
Q Consensus 110 L~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 150 (443)
+++|+.|.+.++. ++..--.. ....++.|++|+++.+...
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCccc
Confidence 7788888866665 32211111 1245677888888876643
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.67 E-value=0.0077 Score=53.65 Aligned_cols=89 Identities=21% Similarity=0.169 Sum_probs=75.3
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCC
Q 013403 57 RKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPF 136 (443)
Q Consensus 57 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l 136 (443)
..+......+.||++.|++. .+-..|+-++.|+.||++.|.+.- .|..++.+..+..+++.+|..+ ..|... +..
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~--~k~ 110 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQ--KKE 110 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccc--ccc
Confidence 46677888999999999987 556678888999999999999987 8999999999999999999874 455555 889
Q ss_pred CCCcEEEccCCccc
Q 013403 137 PSLRIIDLSHNEFT 150 (443)
Q Consensus 137 ~~L~~L~Ls~n~l~ 150 (443)
+.++++++-.|.+.
T Consensus 111 ~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFF 124 (326)
T ss_pred CCcchhhhccCcch
Confidence 99999999888765
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.57 E-value=0.34 Score=27.25 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=7.9
Q ss_pred CCCcEEEcccCCCCC
Q 013403 87 HHLEVLNVGNNQIND 101 (443)
Q Consensus 87 ~~L~~L~Ls~N~l~~ 101 (443)
++|++|+|++|.|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555554
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.57 E-value=0.34 Score=27.25 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=7.9
Q ss_pred CCCcEEEcccCCCCC
Q 013403 87 HHLEVLNVGNNQIND 101 (443)
Q Consensus 87 ~~L~~L~Ls~N~l~~ 101 (443)
++|++|+|++|.|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555554
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.07 E-value=0.43 Score=26.81 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=9.4
Q ss_pred CCCCEEEccCCcCC
Q 013403 63 CNLTSLNLNGNRLE 76 (443)
Q Consensus 63 ~~L~~L~L~~n~l~ 76 (443)
++|++|+|++|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666777777666
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.07 E-value=0.43 Score=26.81 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=9.4
Q ss_pred CCCCEEEccCCcCC
Q 013403 63 CNLTSLNLNGNRLE 76 (443)
Q Consensus 63 ~~L~~L~L~~n~l~ 76 (443)
++|++|+|++|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666777777666
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.04 E-value=0.15 Score=44.74 Aligned_cols=81 Identities=15% Similarity=0.157 Sum_probs=41.4
Q ss_pred CccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCccccc-cccccc-CCCCCCEEEccCC-cCCCCCCcccc
Q 013403 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-IPRKFV-KSCNLTSLNLNGN-RLEGPLPPSLV 84 (443)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~-~p~~~~-~l~~L~~L~L~~n-~l~~~~p~~~~ 84 (443)
.++.+|-++..|..+.-..+.+++ .++.|.+.++.--+. --+.++ -.++|+.|++++| +||..--..+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~--------~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLR--------SIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccc--------hhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH
Confidence 356677777776655432223332 224455544422110 001111 3457888888866 46644444566
Q ss_pred CCCCCcEEEccc
Q 013403 85 NCHHLEVLNVGN 96 (443)
Q Consensus 85 ~l~~L~~L~Ls~ 96 (443)
.+++|+.|.+.+
T Consensus 174 ~lknLr~L~l~~ 185 (221)
T KOG3864|consen 174 KLKNLRRLHLYD 185 (221)
T ss_pred HhhhhHHHHhcC
Confidence 677777776654
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.87 E-value=0.22 Score=27.41 Aligned_cols=14 Identities=50% Similarity=0.736 Sum_probs=5.8
Q ss_pred CCCcEEEcccCCCC
Q 013403 87 HHLEVLNVGNNQIN 100 (443)
Q Consensus 87 ~~L~~L~Ls~N~l~ 100 (443)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34455555555444
No 83
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=81.42 E-value=5.8 Score=39.52 Aligned_cols=93 Identities=19% Similarity=0.116 Sum_probs=48.2
Q ss_pred CCccEEeccCCCCCCcCCCCCC-CCCEEECCCC----------------CCCCEEECcCCcccccccccccC---CCCCC
Q 013403 7 ATLYYLDLSNNFLTNIEYFPPT-NMTQLNFDSN----------------LTHKVLDMRMNNFNGKIPRKFVK---SCNLT 66 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~-~L~~L~Ls~n----------------~~L~~LdLs~n~l~~~~p~~~~~---l~~L~ 66 (443)
+.++++|++.|.+....|..+. .---+.++.| ..+.++||+.|.....+|..... -.-++
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~ 244 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLF 244 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhh
Confidence 4567788888877766551100 0001333333 45677777777666555544322 22355
Q ss_pred EEEccCCcCCC---CCCccccCCCCCcEEEcccCCC
Q 013403 67 SLNLNGNRLEG---PLPPSLVNCHHLEVLNVGNNQI 99 (443)
Q Consensus 67 ~L~L~~n~l~~---~~p~~~~~l~~L~~L~Ls~N~l 99 (443)
.++.++..++- .-+-.++.-++|+..+++.|..
T Consensus 245 ~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 245 KLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccchhhcccccccccccccchhhhccCCC
Confidence 66666554431 1122334455666666666543
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.08 E-value=1.7 Score=24.51 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=13.5
Q ss_pred CCCCeEeCcCCcCcCCCCC
Q 013403 277 KYLSVLNLSYNQFEGPIPR 295 (443)
Q Consensus 277 ~~L~~L~Ls~N~l~g~iP~ 295 (443)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 45778888888887 6665
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.44 E-value=2.1 Score=24.21 Aligned_cols=14 Identities=43% Similarity=0.446 Sum_probs=7.4
Q ss_pred CCccEEeccCCCCC
Q 013403 7 ATLYYLDLSNNFLT 20 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~ 20 (443)
++|+.|+|++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 44555555555554
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=75.62 E-value=1.6 Score=44.21 Aligned_cols=85 Identities=22% Similarity=0.162 Sum_probs=54.1
Q ss_pred CCCCEEECcCC-cccccc----cccccCCCCCCEEEccCCc-CCCCCCcccc-CCCCCcEEEcccCC-CCCCC-chhhhC
Q 013403 39 LTHKVLDMRMN-NFNGKI----PRKFVKSCNLTSLNLNGNR-LEGPLPPSLV-NCHHLEVLNVGNNQ-INDNF-PNWLEI 109 (443)
Q Consensus 39 ~~L~~LdLs~n-~l~~~~----p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~-~l~~L~~L~Ls~N~-l~~~~-p~~~~~ 109 (443)
+.|+.|+++++ ...... ......+.+|+.|+++++. ++...-..+. .+++|++|.+.++. +++.. -.....
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 66777777762 111111 1223356789999999887 5533333333 38899999988777 55432 233456
Q ss_pred CCCCcEEEeecccC
Q 013403 110 LPELQVLILRSNRF 123 (443)
Q Consensus 110 L~~L~~L~L~~N~l 123 (443)
++.|++|+++.+..
T Consensus 294 ~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 294 CPSLRELDLSGCHG 307 (482)
T ss_pred cCcccEEeeecCcc
Confidence 88899999997764
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.23 E-value=1.3 Score=39.00 Aligned_cols=89 Identities=19% Similarity=0.140 Sum_probs=50.9
Q ss_pred CCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCc-cccccchhh
Q 013403 79 LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE-FTGVLLTGY 157 (443)
Q Consensus 79 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 157 (443)
.|.....-..++.+|-++..|....-..+..++.++.|.+.++.--+...-...-+-.++|+.|++++|. ||.. .-.+
T Consensus 93 lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~ 171 (221)
T KOG3864|consen 93 LPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLAC 171 (221)
T ss_pred CCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHH
Confidence 3333333456777888888877655566677777888877776542221111101245788888888765 4422 2234
Q ss_pred HHhHhhhhccC
Q 013403 158 LDNFKAMMHGN 168 (443)
Q Consensus 158 ~~~l~~L~~~~ 168 (443)
+..+++|+.+.
T Consensus 172 L~~lknLr~L~ 182 (221)
T KOG3864|consen 172 LLKLKNLRRLH 182 (221)
T ss_pred HHHhhhhHHHH
Confidence 55555555544
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=70.57 E-value=3.5 Score=23.64 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=5.9
Q ss_pred CCEEECcCCccc
Q 013403 41 HKVLDMRMNNFN 52 (443)
Q Consensus 41 L~~LdLs~n~l~ 52 (443)
|++|||++|.+.
T Consensus 4 L~~LdL~~N~i~ 15 (28)
T smart00368 4 LRELDLSNNKLG 15 (28)
T ss_pred cCEEECCCCCCC
Confidence 445555555543
No 89
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=47.65 E-value=8.3 Score=32.22 Aligned_cols=6 Identities=33% Similarity=0.573 Sum_probs=2.3
Q ss_pred eehhhh
Q 013403 353 MGYGSG 358 (443)
Q Consensus 353 ~g~~~~ 358 (443)
+|+++|
T Consensus 52 IGvVVG 57 (154)
T PF04478_consen 52 IGVVVG 57 (154)
T ss_pred EEEEec
Confidence 343333
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=46.05 E-value=14 Score=44.98 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=21.9
Q ss_pred ecCCCcCCCCCCccccCCCCCCeeecCCCcCCC
Q 013403 235 NISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG 267 (443)
Q Consensus 235 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 267 (443)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 466777775555666667777777777776543
No 91
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=45.85 E-value=13 Score=28.54 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=14.9
Q ss_pred hhcCCchhHHHHHHHhhcccc
Q 013403 369 VFGTGKPRWLVRMIEKYQSNK 389 (443)
Q Consensus 369 ~~~~~~~~w~~~~~~~~~~~~ 389 (443)
++..+.+.||..+..+.+++.
T Consensus 35 alaaKC~~~~k~~~SY~H~rL 55 (102)
T PF15176_consen 35 ALAAKCPVWYKYLASYRHHRL 55 (102)
T ss_pred HHHHHhHHHHHHHhccccccC
Confidence 445567889888887777654
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.40 E-value=12 Score=38.19 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=15.4
Q ss_pred ccccEEEccCCcCCCC--CchhcCCCCCCCEEecCCC
Q 013403 205 TIFMTIDLSSNKFQGG--IPEVVGKLNLLKGLNISHN 239 (443)
Q Consensus 205 ~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N 239 (443)
+.+..+.|++|++... +...-...|.|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3445555555554311 1111123345555555555
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.55 E-value=14 Score=37.61 Aligned_cols=65 Identities=28% Similarity=0.327 Sum_probs=36.8
Q ss_pred CCCCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCC--ccccccccccc--CCCCCCEEEccCCcCCC
Q 013403 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMN--NFNGKIPRKFV--KSCNLTSLNLNGNRLEG 77 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n--~l~~~~p~~~~--~l~~L~~L~L~~n~l~~ 77 (443)
+.+.+..++|++|++..+-. +..| -+.-+.|+.|+|++| .+. ...++. +...|++|.+.||.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~-----~ssl-sq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDA-----LSSL-SQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhh-----hhHH-HHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCcccc
Confidence 45666667777776654321 0000 000166788888888 333 122232 23468999999998874
No 94
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=38.35 E-value=10 Score=29.82 Aligned_cols=32 Identities=22% Similarity=0.015 Sum_probs=1.5
Q ss_pred eehhhhhhhhhhhhHhhhcCCchhH-HHHHHHh
Q 013403 353 MGYGSGLVIGLSVGYMVFGTGKPRW-LVRMIEK 384 (443)
Q Consensus 353 ~g~~~~~~~~~~~~~~~~~~~~~~w-~~~~~~~ 384 (443)
+||++-+||..++.++-||+.|+|- |..+.++
T Consensus 27 aGIGiL~VILgiLLliGCWYckRRSGYk~L~~k 59 (118)
T PF14991_consen 27 AGIGILIVILGILLLIGCWYCKRRSGYKTLRDK 59 (118)
T ss_dssp -SSS-----------------------------
T ss_pred ccceeHHHHHHHHHHHhheeeeecchhhhhhhc
Confidence 4555444444444444455554443 5555554
No 95
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=36.92 E-value=45 Score=28.95 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=4.9
Q ss_pred CCCCCCCCCCC
Q 013403 312 GLCGFPLLESC 322 (443)
Q Consensus 312 ~lcg~p~~~~C 322 (443)
+.||.-..+.|
T Consensus 28 ~CCG~C~~ryC 38 (179)
T PF13908_consen 28 FCCGTCSLRYC 38 (179)
T ss_pred eecCCccCcch
Confidence 44554443333
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.61 E-value=31 Score=42.27 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=12.6
Q ss_pred CcCCcccccccccccCCCCCCEEEccCCcC
Q 013403 46 MRMNNFNGKIPRKFVKSCNLTSLNLNGNRL 75 (443)
Q Consensus 46 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 75 (443)
|++|+|+...+..|.++.+|+.|+|++|.+
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 344444433333444444444444444443
No 97
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=30.34 E-value=17 Score=25.49 Aligned_cols=10 Identities=30% Similarity=0.355 Sum_probs=0.0
Q ss_pred eehhhhhhhh
Q 013403 353 MGYGSGLVIG 362 (443)
Q Consensus 353 ~g~~~~~~~~ 362 (443)
.|+++|.|+|
T Consensus 12 aavIaG~Vvg 21 (64)
T PF01034_consen 12 AAVIAGGVVG 21 (64)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=29.25 E-value=37 Score=18.73 Aligned_cols=9 Identities=22% Similarity=0.183 Sum_probs=3.9
Q ss_pred CCEEECcCC
Q 013403 41 HKVLDMRMN 49 (443)
Q Consensus 41 L~~LdLs~n 49 (443)
|++|+|+++
T Consensus 4 L~~L~l~~C 12 (26)
T smart00367 4 LRELDLSGC 12 (26)
T ss_pred CCEeCCCCC
Confidence 344444444
No 99
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=25.78 E-value=62 Score=28.81 Aligned_cols=21 Identities=10% Similarity=0.181 Sum_probs=9.8
Q ss_pred eeeeeeehhhhhhhhhhhhHh
Q 013403 348 WKFAKMGYGSGLVIGLSVGYM 368 (443)
Q Consensus 348 ~~~~~~g~~~~~~~~~~~~~~ 368 (443)
...+.+|+++|++.+++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i 56 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFI 56 (221)
T ss_pred ceeeeeeeecchhhhHHHHHH
Confidence 344555555554444433333
No 100
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.05 E-value=32 Score=28.11 Aligned_cols=16 Identities=38% Similarity=0.710 Sum_probs=8.9
Q ss_pred hhhhhhhhhhhHhhhc
Q 013403 356 GSGLVIGLSVGYMVFG 371 (443)
Q Consensus 356 ~~~~~~~~~~~~~~~~ 371 (443)
++++|||+++|+++.+
T Consensus 3 ~i~lvvG~iiG~~~~r 18 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGR 18 (128)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666665543
No 101
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=24.95 E-value=24 Score=29.31 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=7.3
Q ss_pred HHHHHHhhccccc
Q 013403 378 LVRMIEKYQSNKE 390 (443)
Q Consensus 378 ~~~~~~~~~~~~~ 390 (443)
..+|++++..++.
T Consensus 43 LPkflqRRssk~k 55 (158)
T PF11770_consen 43 LPKFLQRRSSKRK 55 (158)
T ss_pred hHHHHHhhhhhcc
Confidence 4566666655543
No 102
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=23.78 E-value=38 Score=23.86 Aligned_cols=16 Identities=19% Similarity=0.521 Sum_probs=10.4
Q ss_pred hhhhhhhhhhhhHhhh
Q 013403 355 YGSGLVIGLSVGYMVF 370 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~ 370 (443)
++.++++|+++|+++.
T Consensus 3 iilali~G~~~Gff~a 18 (64)
T PF03672_consen 3 IILALIVGAVIGFFIA 18 (64)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677777776664
No 103
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.50 E-value=17 Score=29.32 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=5.9
Q ss_pred eehhhhhhhhhh
Q 013403 353 MGYGSGLVIGLS 364 (443)
Q Consensus 353 ~g~~~~~~~~~~ 364 (443)
+||++|++.|++
T Consensus 67 ~~Ii~gv~aGvI 78 (122)
T PF01102_consen 67 IGIIFGVMAGVI 78 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred eehhHHHHHHHH
Confidence 445555555543
No 104
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=22.28 E-value=1.4e+02 Score=18.93 Aligned_cols=6 Identities=33% Similarity=1.066 Sum_probs=3.7
Q ss_pred hhHHHH
Q 013403 375 PRWLVR 380 (443)
Q Consensus 375 ~~w~~~ 380 (443)
++|..|
T Consensus 31 RKw~aR 36 (43)
T PF08114_consen 31 RKWQAR 36 (43)
T ss_pred HHHHHH
Confidence 567655
No 105
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.46 E-value=45 Score=26.97 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=13.2
Q ss_pred hhhhhhhhhhhhHhhhcCCc
Q 013403 355 YGSGLVIGLSVGYMVFGTGK 374 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~ 374 (443)
.++|+|||+++|+++.+...
T Consensus 11 a~igLvvGi~IG~li~Rlt~ 30 (138)
T COG3105 11 ALIGLVVGIIIGALIARLTN 30 (138)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 45677777777777765333
No 106
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=20.63 E-value=32 Score=28.80 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=17.1
Q ss_pred ceeeeeeehhhhhhhhhhhhHhhhc
Q 013403 347 DWKFAKMGYGSGLVIGLSVGYMVFG 371 (443)
Q Consensus 347 ~~~~~~~g~~~~~~~~~~~~~~~~~ 371 (443)
-...+.+|+++++++++++++++|+
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c 74 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFC 74 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEE
Confidence 3667888888888877655555443
No 107
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=20.49 E-value=32 Score=25.48 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=9.1
Q ss_pred eeeeeeehhhhhhhhhhh
Q 013403 348 WKFAKMGYGSGLVIGLSV 365 (443)
Q Consensus 348 ~~~~~~g~~~~~~~~~~~ 365 (443)
|.++.++-+++++.+.+.
T Consensus 16 ~yyiiA~gga~llL~~v~ 33 (87)
T PF11980_consen 16 WYYIIAMGGALLLLVAVC 33 (87)
T ss_pred eeHHHhhccHHHHHHHHH
Confidence 445555545555555444
No 108
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=20.25 E-value=76 Score=21.24 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=14.1
Q ss_pred Ccccceeeeeeehhhhhhhhhhh
Q 013403 343 SSWFDWKFAKMGYGSGLVIGLSV 365 (443)
Q Consensus 343 ~~~~~~~~~~~g~~~~~~~~~~~ 365 (443)
..+.+.+|..+|.+.|+.+....
T Consensus 15 g~eid~KYa~IGtalGvaisAgF 37 (61)
T PF14986_consen 15 GAEIDIKYAIIGTALGVAISAGF 37 (61)
T ss_pred CceeeeeeeeehhHHHHHHHHHH
Confidence 34556778877766665555433
Done!