Query 013403
Match_columns 443
No_of_seqs 354 out of 4173
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 09:56:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7E-42 2.4E-46 366.4 22.0 322 6-331 393-757 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 3.6E-37 1.2E-41 295.3 13.0 259 7-322 50-312 (313)
3 3rgz_A Protein brassinosteroid 100.0 1E-34 3.5E-39 310.9 17.7 249 41-311 396-715 (768)
4 3v47_A TOLL-like receptor 5B a 100.0 2E-33 6.9E-38 283.0 20.6 308 7-315 30-410 (455)
5 2id5_A Lingo-1, leucine rich r 100.0 2.8E-32 9.6E-37 276.4 19.4 284 7-293 32-336 (477)
6 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-32 4.2E-37 297.7 17.7 265 40-316 267-563 (844)
7 3v47_A TOLL-like receptor 5B a 100.0 8.6E-31 3E-35 263.7 23.2 273 5-297 52-415 (455)
8 4eco_A Uncharacterized protein 100.0 2.1E-31 7.1E-36 279.2 17.4 302 5-314 247-601 (636)
9 2id5_A Lingo-1, leucine rich r 100.0 9.6E-31 3.3E-35 265.2 20.8 301 10-315 14-335 (477)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2E-30 6.8E-35 270.5 21.9 120 7-126 32-168 (606)
11 3t6q_A CD180 antigen; protein- 100.0 4.4E-31 1.5E-35 275.5 16.8 285 8-314 255-561 (606)
12 1ogq_A PGIP-2, polygalacturona 100.0 7.7E-32 2.6E-36 258.2 9.6 230 5-291 74-306 (313)
13 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-30 6.5E-35 270.7 17.8 289 5-296 54-539 (606)
14 1xku_A Decorin; proteoglycan, 100.0 5.6E-29 1.9E-33 240.1 25.3 235 8-296 32-281 (330)
15 3o6n_A APL1; leucine-rich repe 100.0 7.5E-30 2.6E-34 251.9 19.6 295 4-314 42-353 (390)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-29 4.7E-34 261.0 22.4 125 7-131 26-168 (549)
17 1ziw_A TOLL-like receptor 3; i 100.0 9.9E-30 3.4E-34 268.9 21.4 264 5-314 327-623 (680)
18 2z63_A TOLL-like receptor 4, v 100.0 1.1E-29 3.8E-34 262.8 21.4 94 202-295 418-512 (570)
19 4ecn_A Leucine-rich repeat pro 100.0 2.3E-29 8E-34 269.4 22.9 298 5-311 489-838 (876)
20 4eco_A Uncharacterized protein 100.0 2.2E-30 7.6E-35 271.4 13.5 297 5-311 204-577 (636)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-29 6.6E-34 263.8 20.6 117 204-326 468-587 (635)
22 3t6q_A CD180 antigen; protein- 100.0 1.4E-29 4.9E-34 264.0 18.9 272 5-295 276-565 (606)
23 3oja_B Anopheles plasmodium-re 100.0 1.9E-29 6.6E-34 262.6 19.6 295 4-314 48-359 (597)
24 2z7x_B TOLL-like receptor 1, v 100.0 8.9E-29 3E-33 253.4 23.5 111 7-123 21-150 (520)
25 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-28 7.2E-33 236.2 23.9 246 8-295 34-281 (332)
26 4fcg_A Uncharacterized protein 100.0 5.5E-29 1.9E-33 239.9 19.0 226 6-290 80-314 (328)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-28 4.1E-33 254.9 22.9 157 134-314 350-511 (562)
28 1ziw_A TOLL-like receptor 3; i 100.0 6.3E-28 2.1E-32 255.1 28.2 322 6-330 221-634 (680)
29 1ozn_A Reticulon 4 receptor; N 100.0 3.2E-29 1.1E-33 236.6 16.3 229 10-295 14-243 (285)
30 4ecn_A Leucine-rich repeat pro 100.0 3.5E-29 1.2E-33 268.1 18.1 296 5-311 446-817 (876)
31 3zyi_A Leucine-rich repeat-con 100.0 1.3E-28 4.5E-33 247.8 21.0 237 10-293 57-306 (452)
32 3j0a_A TOLL-like receptor 5; m 100.0 4.7E-29 1.6E-33 269.6 18.7 281 6-290 23-375 (844)
33 2z66_A Variable lymphocyte rec 100.0 9.6E-29 3.3E-33 235.8 18.2 228 10-294 10-240 (306)
34 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-28 7.2E-33 250.6 20.9 278 10-296 3-418 (520)
35 2z63_A TOLL-like receptor 4, v 100.0 9.2E-29 3.1E-33 255.9 18.0 143 7-151 28-191 (570)
36 3zyj_A Leucine-rich repeat-con 100.0 2.9E-28 9.9E-33 244.4 21.0 238 9-293 45-295 (440)
37 4fmz_A Internalin; leucine ric 100.0 1.1E-27 3.8E-32 232.4 24.2 287 5-310 42-343 (347)
38 4fcg_A Uncharacterized protein 100.0 3.7E-28 1.3E-32 234.0 20.0 209 39-296 81-296 (328)
39 3oja_B Anopheles plasmodium-re 100.0 2.7E-28 9.1E-33 254.0 18.9 282 5-317 73-384 (597)
40 3zyj_A Leucine-rich repeat-con 100.0 2.1E-27 7.1E-32 238.2 22.8 229 39-315 64-294 (440)
41 3zyi_A Leucine-rich repeat-con 100.0 1.9E-27 6.5E-32 239.3 22.4 229 39-315 75-305 (452)
42 2z80_A TOLL-like receptor 2, v 100.0 2E-28 6.8E-33 238.4 14.1 267 5-294 29-318 (353)
43 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-27 4.7E-32 246.9 20.9 295 6-310 30-460 (562)
44 1xku_A Decorin; proteoglycan, 100.0 4.2E-27 1.4E-31 226.9 22.8 231 7-290 52-306 (330)
45 1wwl_A Monocyte differentiatio 100.0 1.4E-29 4.7E-34 242.5 5.1 237 6-291 42-310 (312)
46 3o6n_A APL1; leucine-rich repe 100.0 1.3E-27 4.5E-32 235.8 18.2 274 25-311 42-329 (390)
47 2z66_A Variable lymphocyte rec 100.0 6.2E-28 2.1E-32 230.2 15.2 233 7-294 28-265 (306)
48 1ozn_A Reticulon 4 receptor; N 100.0 6.2E-28 2.1E-32 227.8 14.5 236 6-296 31-267 (285)
49 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-27 6.6E-32 245.0 18.5 283 5-290 3-423 (549)
50 4fmz_A Internalin; leucine ric 99.9 8.8E-27 3E-31 226.1 22.0 270 5-290 64-346 (347)
51 1o6v_A Internalin A; bacterial 99.9 8.6E-27 3E-31 235.4 22.8 288 5-311 66-386 (466)
52 2ft3_A Biglycan; proteoglycan, 99.9 5.1E-27 1.7E-31 226.5 19.5 230 7-290 54-307 (332)
53 3bz5_A Internalin-J, INLJ; leu 99.9 2.8E-26 9.7E-31 230.7 24.1 247 5-295 40-304 (457)
54 4g8a_A TOLL-like receptor 4; l 99.9 2.5E-26 8.5E-31 240.2 24.4 287 8-294 53-584 (635)
55 1o6v_A Internalin A; bacterial 99.9 6.1E-26 2.1E-30 229.2 21.9 135 6-151 45-191 (466)
56 2z80_A TOLL-like receptor 2, v 99.9 4E-27 1.4E-31 229.2 12.4 267 27-315 30-316 (353)
57 2z62_A TOLL-like receptor 4, v 99.9 1E-25 3.6E-30 211.5 19.4 210 40-296 29-243 (276)
58 2o6q_A Variable lymphocyte rec 99.9 5.5E-25 1.9E-29 206.0 23.1 205 41-294 18-222 (270)
59 3o53_A Protein LRIM1, AGAP0063 99.9 2.4E-27 8.2E-32 227.4 6.0 219 5-290 32-250 (317)
60 3bz5_A Internalin-J, INLJ; leu 99.9 8.3E-25 2.8E-29 220.0 24.4 264 5-291 62-353 (457)
61 1jl5_A Outer protein YOPM; leu 99.9 1.1E-24 3.7E-29 218.9 24.2 261 7-296 91-378 (454)
62 3oja_A Leucine-rich immune mol 99.9 3.3E-26 1.1E-30 232.1 11.7 218 6-290 33-250 (487)
63 2z62_A TOLL-like receptor 4, v 99.9 6.1E-25 2.1E-29 206.3 18.1 211 7-269 28-240 (276)
64 1jl5_A Outer protein YOPM; leu 99.9 1.7E-24 5.9E-29 217.5 22.2 259 8-296 132-417 (454)
65 1wwl_A Monocyte differentiatio 99.9 4.1E-26 1.4E-30 218.2 9.6 238 27-311 42-307 (312)
66 4glp_A Monocyte differentiatio 99.9 3.8E-25 1.3E-29 211.4 16.1 206 39-290 91-307 (310)
67 2o6q_A Variable lymphocyte rec 99.9 6.9E-24 2.4E-28 198.5 23.4 205 8-269 17-221 (270)
68 3oja_A Leucine-rich immune mol 99.9 1.7E-25 5.9E-30 226.8 11.4 218 39-316 34-253 (487)
69 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-25 7.6E-30 213.6 11.2 217 39-315 34-252 (317)
70 3rfs_A Internalin B, repeat mo 99.9 2.3E-24 7.8E-29 202.0 17.0 201 39-296 41-241 (272)
71 3rfs_A Internalin B, repeat mo 99.9 4.6E-25 1.6E-29 206.8 12.1 208 6-278 40-247 (272)
72 1p9a_G Platelet glycoprotein I 99.9 8.1E-24 2.8E-28 200.1 19.7 87 204-291 123-209 (290)
73 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-23 5.4E-28 217.3 22.6 253 8-295 41-302 (622)
74 1p9a_G Platelet glycoprotein I 99.9 2.6E-23 8.8E-28 196.6 21.2 203 5-268 8-210 (290)
75 3m19_A Variable lymphocyte rec 99.9 1.6E-23 5.6E-28 193.7 16.4 121 204-325 106-232 (251)
76 2xwt_C Thyrotropin receptor; s 99.9 3.4E-23 1.2E-27 190.1 14.8 196 40-287 32-236 (239)
77 3m19_A Variable lymphocyte rec 99.9 2.3E-22 7.8E-27 186.0 19.2 178 42-268 17-194 (251)
78 3goz_A Leucine-rich repeat-con 99.9 3.9E-24 1.3E-28 208.8 7.3 242 11-292 2-299 (362)
79 2xwt_C Thyrotropin receptor; s 99.9 1.1E-22 3.7E-27 186.7 14.8 198 7-264 31-237 (239)
80 4glp_A Monocyte differentiatio 99.9 6.8E-23 2.3E-27 195.7 13.4 226 39-311 64-305 (310)
81 2ca6_A RAN GTPase-activating p 99.9 5.4E-25 1.8E-29 216.8 -1.4 216 40-294 61-320 (386)
82 1h6u_A Internalin H; cell adhe 99.9 2.8E-22 9.6E-27 191.2 17.5 191 39-291 41-231 (308)
83 1z7x_W Ribonuclease inhibitor; 99.9 1.2E-24 4.1E-29 219.1 -0.4 270 8-291 86-412 (461)
84 2ast_B S-phase kinase-associat 99.9 5.9E-24 2E-28 205.1 3.6 89 204-296 221-312 (336)
85 1z7x_W Ribonuclease inhibitor; 99.9 1.3E-24 4.4E-29 218.9 -3.0 273 5-291 26-355 (461)
86 1h6u_A Internalin H; cell adhe 99.9 1.2E-21 4E-26 186.9 15.6 193 5-267 39-231 (308)
87 3g06_A SSPH2 (leucine-rich rep 99.9 2.7E-21 9.3E-26 200.5 17.3 239 7-277 61-308 (622)
88 2ca6_A RAN GTPase-activating p 99.9 5E-23 1.7E-27 202.7 2.4 239 5-285 30-338 (386)
89 3cvr_A Invasion plasmid antige 99.9 4.5E-21 1.5E-25 196.6 16.9 182 40-295 60-248 (571)
90 2o6s_A Variable lymphocyte rec 99.9 7.3E-21 2.5E-25 170.7 14.9 85 205-296 100-184 (208)
91 2o6s_A Variable lymphocyte rec 99.8 1.4E-20 4.8E-25 168.8 15.7 181 42-278 10-190 (208)
92 2ast_B S-phase kinase-associat 99.8 7E-22 2.4E-26 190.5 6.6 203 39-287 70-282 (336)
93 4ay9_X Follicle-stimulating ho 99.8 1.2E-20 4E-25 183.3 14.9 236 10-305 12-251 (350)
94 4ay9_X Follicle-stimulating ho 99.8 6.5E-21 2.2E-25 185.1 12.4 222 7-287 30-256 (350)
95 3goz_A Leucine-rich repeat-con 99.8 4E-22 1.4E-26 194.6 3.7 212 40-290 23-266 (362)
96 3cvr_A Invasion plasmid antige 99.8 2.8E-20 9.5E-25 190.7 16.0 190 7-278 59-255 (571)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 3.9E-20 1.3E-24 167.5 10.1 91 204-294 80-170 (220)
98 1h6t_A Internalin B; cell adhe 99.8 3.1E-19 1.1E-23 168.7 15.3 171 60-290 43-213 (291)
99 2xot_A Amphoterin-induced prot 99.8 1.7E-19 5.8E-24 175.8 12.4 106 42-152 21-127 (361)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-18 4.6E-23 157.3 17.1 148 10-159 14-175 (220)
101 1h6t_A Internalin B; cell adhe 99.8 3.9E-19 1.3E-23 167.9 14.1 170 39-268 46-215 (291)
102 2xot_A Amphoterin-induced prot 99.8 2.9E-19 1E-23 174.1 12.2 130 10-152 21-151 (361)
103 1m9s_A Internalin B; cell inva 99.8 5.6E-19 1.9E-23 182.8 14.9 81 204-290 130-210 (605)
104 3e6j_A Variable lymphocyte rec 99.8 2.7E-18 9.2E-23 156.4 17.6 156 65-294 21-176 (229)
105 1m9s_A Internalin B; cell inva 99.8 2.1E-19 7.1E-24 186.1 11.3 197 7-274 21-218 (605)
106 2v9t_B SLIT homolog 2 protein 99.8 1.1E-18 3.8E-23 157.9 14.6 154 66-292 14-167 (220)
107 3e6j_A Variable lymphocyte rec 99.8 3.4E-18 1.2E-22 155.7 17.5 156 41-270 21-176 (229)
108 2v9t_B SLIT homolog 2 protein 99.8 7.2E-18 2.4E-22 152.5 17.8 147 10-158 14-173 (220)
109 3ogk_B Coronatine-insensitive 99.8 1.1E-19 3.7E-24 188.7 2.4 138 5-145 162-326 (592)
110 4ezg_A Putative uncharacterize 99.8 8E-18 2.7E-22 149.5 13.8 82 205-290 112-194 (197)
111 1xeu_A Internalin C; cellular 99.8 9E-19 3.1E-23 163.0 7.7 78 207-290 108-185 (263)
112 1xeu_A Internalin C; cellular 99.7 2E-18 6.7E-23 160.7 9.1 167 42-269 22-188 (263)
113 3ogk_B Coronatine-insensitive 99.7 1.6E-19 5.4E-24 187.4 1.2 284 5-291 190-527 (592)
114 1dce_A Protein (RAB geranylger 99.7 1.5E-20 5E-25 193.5 -6.7 88 204-294 462-550 (567)
115 4b8c_D Glucose-repressible alc 99.7 3.7E-19 1.3E-23 188.5 2.8 110 39-154 224-333 (727)
116 4ezg_A Putative uncharacterize 99.7 8.6E-18 2.9E-22 149.3 10.7 140 5-150 42-194 (197)
117 1w8a_A SLIT protein; signaling 99.7 6.6E-18 2.3E-22 149.4 7.6 92 204-295 53-144 (192)
118 1w8a_A SLIT protein; signaling 99.7 1.1E-16 3.8E-21 141.5 14.2 136 10-158 11-147 (192)
119 4b8c_D Glucose-repressible alc 99.7 1.3E-17 4.4E-22 176.7 7.5 225 6-291 172-405 (727)
120 1dce_A Protein (RAB geranylger 99.7 1.8E-19 6.3E-24 185.3 -7.0 197 35-284 345-567 (567)
121 2wfh_A SLIT homolog 2 protein 99.7 9.1E-16 3.1E-20 135.7 16.0 136 10-159 13-148 (193)
122 2p1m_B Transport inhibitor res 99.7 1.7E-17 5.7E-22 172.2 2.9 66 5-71 154-243 (594)
123 2o6r_A Variable lymphocyte rec 99.6 2.4E-15 8.2E-20 130.9 15.3 133 9-154 9-141 (177)
124 2ell_A Acidic leucine-rich nuc 99.6 6.4E-16 2.2E-20 133.4 11.2 107 40-150 25-133 (168)
125 2ell_A Acidic leucine-rich nuc 99.6 3E-16 1E-20 135.5 8.8 136 5-152 22-162 (168)
126 3sb4_A Hypothetical leucine ri 99.6 4.9E-16 1.7E-20 149.3 9.5 208 62-296 100-315 (329)
127 2p1m_B Transport inhibitor res 99.6 4E-17 1.4E-21 169.4 1.8 285 5-291 103-495 (594)
128 2je0_A Acidic leucine-rich nuc 99.6 3.7E-16 1.3E-20 132.1 7.4 108 41-152 19-128 (149)
129 2je0_A Acidic leucine-rich nuc 99.6 1.6E-15 5.3E-20 128.2 9.9 132 5-146 15-149 (149)
130 2o6r_A Variable lymphocyte rec 99.6 1.2E-14 4E-19 126.6 13.3 91 204-294 51-141 (177)
131 2wfh_A SLIT homolog 2 protein 99.6 1.2E-14 4.2E-19 128.4 13.5 107 42-154 13-119 (193)
132 3sb4_A Hypothetical leucine ri 99.5 1.6E-14 5.3E-19 138.8 10.8 224 39-296 49-291 (329)
133 1a9n_A U2A', U2A'; complex (nu 99.5 8E-15 2.7E-19 127.5 6.7 134 5-151 17-154 (176)
134 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.9E-18 119.5 13.5 109 41-154 11-119 (170)
135 1a9n_A U2A', U2A'; complex (nu 99.5 4.3E-14 1.5E-18 122.9 9.3 63 83-150 15-77 (176)
136 3g39_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 118.8 12.5 108 8-126 10-117 (170)
137 1ds9_A Outer arm dynein; leuci 99.5 2.2E-16 7.5E-21 140.3 -5.6 87 60-151 15-107 (198)
138 2r9u_A Variable lymphocyte rec 99.5 2.5E-13 8.7E-18 117.8 13.5 107 42-153 15-121 (174)
139 1ds9_A Outer arm dynein; leuci 99.5 2.2E-16 7.6E-21 140.2 -7.3 102 42-150 21-128 (198)
140 2r9u_A Variable lymphocyte rec 99.5 4.7E-13 1.6E-17 116.1 12.7 107 9-126 14-120 (174)
141 4fdw_A Leucine rich hypothetic 99.4 8.5E-12 2.9E-16 122.7 19.5 218 40-290 136-358 (401)
142 4fdw_A Leucine rich hypothetic 99.4 9.4E-12 3.2E-16 122.4 18.1 226 39-290 157-383 (401)
143 2ifg_A High affinity nerve gro 99.3 5.8E-12 2E-16 121.6 12.2 115 42-161 11-127 (347)
144 3un9_A NLR family member X1; l 99.3 4.1E-14 1.4E-18 138.0 -5.5 188 63-290 72-283 (372)
145 3un9_A NLR family member X1; l 99.3 7E-14 2.4E-18 136.3 -4.2 166 86-291 71-253 (372)
146 2ifg_A High affinity nerve gro 99.3 1.7E-11 5.7E-16 118.3 10.5 105 10-125 11-117 (347)
147 4fs7_A Uncharacterized protein 99.0 4E-09 1.4E-13 103.5 14.0 82 202-286 294-375 (394)
148 2ra8_A Uncharacterized protein 98.9 1.1E-10 3.9E-15 112.8 -0.3 63 228-290 251-320 (362)
149 2ra8_A Uncharacterized protein 98.8 2.5E-09 8.7E-14 103.3 5.5 62 55-119 164-227 (362)
150 4fs7_A Uncharacterized protein 98.7 9.9E-08 3.4E-12 93.5 11.3 268 5-282 69-393 (394)
151 1io0_A Tropomodulin; LRR prote 98.5 8.7E-09 3E-13 89.9 -0.9 116 36-151 33-165 (185)
152 3rw6_A Nuclear RNA export fact 98.5 1.4E-08 4.6E-13 93.5 -1.0 65 61-127 168-236 (267)
153 1io0_A Tropomodulin; LRR prote 98.5 8.5E-08 2.9E-12 83.6 4.0 116 5-124 34-164 (185)
154 4gt6_A Cell surface protein; l 98.5 9.9E-06 3.4E-10 79.1 19.1 270 8-289 65-369 (394)
155 3rw6_A Nuclear RNA export fact 98.3 4E-07 1.4E-11 83.6 5.4 78 39-118 170-258 (267)
156 4gt6_A Cell surface protein; l 98.3 1.1E-05 3.7E-10 78.8 15.2 255 5-290 85-391 (394)
157 4h09_A Hypothetical leucine ri 98.2 6E-05 2.1E-09 73.0 18.6 81 204-286 262-342 (379)
158 3e4g_A ATP synthase subunit S, 97.9 2.7E-06 9.3E-11 72.6 1.8 84 63-148 61-150 (176)
159 4h09_A Hypothetical leucine ri 97.8 0.00083 2.8E-08 64.9 18.1 242 5-277 67-356 (379)
160 3e4g_A ATP synthase subunit S, 97.7 6.8E-06 2.3E-10 70.2 1.5 83 40-122 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 2.7E-05 9.3E-10 67.7 0.2 116 35-150 37-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00023 8E-09 61.8 3.6 113 6-123 40-169 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.0018 6E-08 52.4 7.0 55 209-265 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.0023 7.8E-08 51.7 6.5 35 65-99 33-67 (130)
165 2lz0_A Uncharacterized protein 62.4 15 0.00051 27.4 5.5 46 74-120 7-52 (100)
166 2lz0_A Uncharacterized protein 59.6 12 0.00041 27.9 4.5 48 49-97 6-53 (100)
167 1e9k_A CAMP specific phosphodi 20.3 16 0.00054 21.0 -0.6 13 430-442 14-26 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7e-42 Score=366.39 Aligned_cols=322 Identities=31% Similarity=0.479 Sum_probs=203.3
Q ss_pred CCCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEE
Q 013403 6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (443)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~ 69 (443)
+++|++|++++|.+++.+| ..+++|+.|++++| ++|++|++++|.+++.+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 3445555555555544444 33445555555554 4455555555555555555555555555555
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCcc
Q 013403 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (443)
Q Consensus 70 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l 149 (443)
+++|.+++.+|..+.++++|++|++++|.+++.+|.+++.+++|++|++++|++++.+|..+ +.+++|+.|++++|.+
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCcc
Confidence 55555555555555555555555555555555555555555555555555555555555443 5555555555555555
Q ss_pred ccccchhhHHhHhhhhccCCCcc-cccccCCC--------------------------CCCCcceeEEEEeccchhhhHh
Q 013403 150 TGVLLTGYLDNFKAMMHGNNISV-EVDYMTPL--------------------------NSSNYYESIILTIKGIDIKMER 202 (443)
Q Consensus 150 ~~~~~~~~~~~l~~L~~~~~~~~-~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~ 202 (443)
+|.+|..++. ...+........ ...++... ..............+.....+.
T Consensus 551 ~g~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 551 NGTIPAAMFK-QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp ESBCCGGGGT-TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred CCcCChHHhc-ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 5555544222 111111000000 00000000 0000000000011111122233
Q ss_pred hhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeE
Q 013403 203 ILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 282 (443)
Q Consensus 203 ~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 282 (443)
.++.|+.|||++|+++|.+|..++.++.|+.|+|++|+++|.+|..++++++|++|||++|+++|.+|..+..+++|++|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCcCcCCCCCCCCCCCcCCCccCCCCCCCCCCCCCCCCCCCCCCCC
Q 013403 283 NLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNIDEAPEPV 331 (443)
Q Consensus 283 ~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~p~~~~C~~~~~~~~~ 331 (443)
|+++|+++|.||...++.++...++.||+++||.|+. .|.......+.
T Consensus 710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~~~ 757 (768)
T 3rgz_A 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADGYA 757 (768)
T ss_dssp ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-----
T ss_pred ECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccCCCC
Confidence 9999999999999999999999999999999999987 89766554443
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.6e-37 Score=295.31 Aligned_cols=259 Identities=28% Similarity=0.442 Sum_probs=231.3
Q ss_pred CCccEEeccCCCCCC--cCCCCCCCCCEEECCCCCCCCEEECcC-CcccccccccccCCCCCCEEEccCCcCCCCCCccc
Q 013403 7 ATLYYLDLSNNFLTN--IEYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~--~~~~~~~~L~~L~Ls~n~~L~~LdLs~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 83 (443)
.+++.|+|++|.+++ .+|..+.+++ +|++|++++ |++.+.+|..|+++++|++|++++|.+++.+|..|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~--------~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP--------YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT--------TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC--------CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH
Confidence 579999999999998 6776555554 448999995 99999999999999999999999999998999999
Q ss_pred cCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCC-CCcEEEccCCccccccchhhHHhHh
Q 013403 84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFP-SLRIIDLSHNEFTGVLLTGYLDNFK 162 (443)
Q Consensus 84 ~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~ 162 (443)
.++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+ ..++ +|+.|++++|++++..+..+.
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~~---- 195 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTFA---- 195 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGGG----
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHHh----
Confidence 999999999999999998899999999999999999999988888766 7787 899999999999877665421
Q ss_pred hhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCC
Q 013403 163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (443)
Q Consensus 163 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 242 (443)
.++ |+.|++++|.+++.+|..+..+++|+.|++++|+++
T Consensus 196 ----------------------------------------~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 196 ----------------------------------------NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp ----------------------------------------GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred ----------------------------------------CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 133 899999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCCCCCCCcCCCccCCCCCCCCCCCCCCC
Q 013403 243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESC 322 (443)
Q Consensus 243 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~p~~~~C 322 (443)
+.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|....+..+....+.+|+.+||.|.. .|
T Consensus 235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 77666 88899999999999999999999999999999999999999999999888888889999999999998876 46
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-34 Score=310.91 Aligned_cols=249 Identities=27% Similarity=0.371 Sum_probs=158.1
Q ss_pred CCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeec
Q 013403 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (443)
Q Consensus 41 L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~ 120 (443)
|++|++++|.+++.+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 44555555555545555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhh
Q 013403 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM 200 (443)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (443)
|++++.+|..+ ..+++|+.|++++|++++..|.. ++.++.|+.++.... .+.+..+..
T Consensus 476 N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N-------------------~l~~~~p~~ 533 (768)
T 3rgz_A 476 NDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNN-------------------SFSGNIPAE 533 (768)
T ss_dssp SCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSS-------------------CCEEECCGG
T ss_pred CcccCcCCHHH--hcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCC-------------------cccCcCCHH
Confidence 55555554433 45555555555555555544433 333443333332111 111111222
Q ss_pred HhhhccccEEEccCCcCCCCCchh--------------------------------------------------------
Q 013403 201 ERILTIFMTIDLSSNKFQGGIPEV-------------------------------------------------------- 224 (443)
Q Consensus 201 ~~~~~~L~~L~Ls~N~l~~~~p~~-------------------------------------------------------- 224 (443)
...+++|+.|++++|.++|.+|..
T Consensus 534 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613 (768)
T ss_dssp GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 334666777777777776665543
Q ss_pred --------------cCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCc
Q 013403 225 --------------VGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 225 --------------l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 290 (443)
++.+++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|..++.+++|+.|||++|+++
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 444678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-CCCCCcCCCccCCCC
Q 013403 291 GPIPRG-SQFNTFPNDSYVGNS 311 (443)
Q Consensus 291 g~iP~~-~~~~~~~~~~~~gn~ 311 (443)
|.+|.. ..+..+...+..+|.
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSE
T ss_pred CcCChHHhCCCCCCEEECcCCc
Confidence 999976 234445555556664
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2e-33 Score=283.00 Aligned_cols=308 Identities=21% Similarity=0.201 Sum_probs=226.3
Q ss_pred CCccEEeccCCCCCCcCC---CCCCCCCEEECCCC--------------CCCCEEECcCCcccccccccccCCCCCCEEE
Q 013403 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n--------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~ 69 (443)
++|++|||++|.+++..| ..+++|+.|++++| ++|++|||++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 679999999999999876 67889999999988 7899999999999988899999999999999
Q ss_pred ccCCcCCCCCCcc--ccCCCCCcEEEcccCCCCCCCchh-hhCCCCCcEEEeecccCcCCCCCCCCc-------------
Q 013403 70 LNGNRLEGPLPPS--LVNCHHLEVLNVGNNQINDNFPNW-LEILPELQVLILRSNRFWGPIGENTTI------------- 133 (443)
Q Consensus 70 L~~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~-~~~L~~L~~L~L~~N~l~~~~~~~~~~------------- 133 (443)
+++|.+++..|.. |.++++|++|++++|.+++..|.. +..+++|++|++++|.+++..+..+.-
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755555 889999999999999999977766 889999999999999998877654411
Q ss_pred -------------------cCCCCCcEEEccCCccccccchhhHHhH--hhhhccCCCcccc-------cccCCCCC---
Q 013403 134 -------------------VPFPSLRIIDLSHNEFTGVLLTGYLDNF--KAMMHGNNISVEV-------DYMTPLNS--- 182 (443)
Q Consensus 134 -------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~~~~~~~~~-------~~~~~~~~--- 182 (443)
..+++|+.|++++|++++..+..+...+ ..++.+....... ..+.....
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 1336788888888888776665433221 2222222111000 00000000
Q ss_pred ----CCcceeEEEEe---ccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCC
Q 013403 183 ----SNYYESIILTI---KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEV 255 (443)
Q Consensus 183 ----~~~~~~~~~~~---~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 255 (443)
......+.... .......+..+++|+.|++++|++++..|..+..+++|++|++++|.+++..|..++++++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 00111222111 12223344557889999999999988888888899999999999999987778888899999
Q ss_pred CeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCC--CCCCCcCCCccCCCCCCCC
Q 013403 256 ESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG--SQFNTFPNDSYVGNSGLCG 315 (443)
Q Consensus 256 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~--~~~~~~~~~~~~gn~~lcg 315 (443)
++|++++|++++..|..+..+++|++|++++|++++ +|.. ..+..+....+.+|+..|.
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCcccC
Confidence 999999999988888888899999999999999984 4543 2344455555556555443
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-32 Score=276.43 Aligned_cols=284 Identities=19% Similarity=0.171 Sum_probs=193.8
Q ss_pred CCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEc
Q 013403 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L 70 (443)
+++++|||++|.+++..+ ..+++|+.|+|++| ++|++|+|++|.+++..+..|.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 578888999998888766 56778888888887 68889999999888666667888889999999
Q ss_pred cCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccc
Q 013403 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (443)
Q Consensus 71 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 150 (443)
++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ ..+++|+.|++++|.++
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL--SHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH--TTCTTCCEEEEESCCCC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh--cccCCCcEEeCCCCcCc
Confidence 9998887778888888899999999888888777888888889999998888876544333 67888888888888887
Q ss_pred cccchhhHHhHhhhhccCCCcccc-cccC-CCCCCCcceeEEEE---eccchhhhHhhhccccEEEccCCcCCCCCchhc
Q 013403 151 GVLLTGYLDNFKAMMHGNNISVEV-DYMT-PLNSSNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV 225 (443)
Q Consensus 151 ~~~~~~~~~~l~~L~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l 225 (443)
+..+.. +..++.|+.+....... ..+. .......+..+... +..++...+..+++|+.|+|++|.+++..+..+
T Consensus 190 ~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 190 AIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp EECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred EeChhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 665433 44445554443311100 0000 00000011122221 222333334446667777777777666666666
Q ss_pred CCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCC
Q 013403 226 GKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPI 293 (443)
Q Consensus 226 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i 293 (443)
..+++|++|+|++|++++..|..+.++++|+.|++++|++++..+..|..+++|+.|++++|++++..
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 66777777777777776666666667777777777777776655666666677777777777766543
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=297.69 Aligned_cols=265 Identities=20% Similarity=0.208 Sum_probs=151.0
Q ss_pred CCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEee
Q 013403 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (443)
Q Consensus 40 ~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~ 119 (443)
+|+.|++++|.+++..|..|..+++|++|+|++|.+++..|..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 46666666666666666666677777777777777776666667777777777777777766666667777777777777
Q ss_pred cccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCC-----------------C-
Q 013403 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL-----------------N- 181 (443)
Q Consensus 120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~-----------------~- 181 (443)
+|.+.+..+..+ ..+++|+.|++++|.+++... ++.+..+.........+... .
T Consensus 347 ~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~i~~------~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 347 KNHIAIIQDQTF--KFLEKLQTLDLRDNALTTIHF------IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI 418 (844)
T ss_dssp SCCCCCCCSSCS--CSCCCCCEEEEETCCSCCCSS------CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT
T ss_pred CCCCCccChhhh--cCCCCCCEEECCCCCCCcccC------CCCcchhccCCCCcccccccccccceeecccCccccCch
Confidence 776655544433 666777777777776664321 11111111100000000000 0
Q ss_pred -----CCCcceeEEEEeccch----hhhHhhhccccEEEccCCcCC-----CCCchhcCCCCCCCEEecCCCcCCCCCCc
Q 013403 182 -----SSNYYESIILTIKGID----IKMERILTIFMTIDLSSNKFQ-----GGIPEVVGKLNLLKGLNISHNNLTGDIPS 247 (443)
Q Consensus 182 -----~~~~~~~~~~~~~~~~----~~~~~~~~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 247 (443)
....+..+....+.+. ......+++|+.|++++|.++ +..+..+..+++|+.|+|++|++++.+|.
T Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 498 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498 (844)
T ss_dssp HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT
T ss_pred hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChh
Confidence 0001111111111111 001111344555555555544 23334566667777777777777766666
Q ss_pred cccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCCCCCCCcCCCccCCCCCCCCC
Q 013403 248 SLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGF 316 (443)
Q Consensus 248 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~ 316 (443)
.+.++++|+.|+|++|++++..|..+. ++|+.||+++|++++.+|.. +..+...++.||+..|++
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 499 VFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICEC 563 (844)
T ss_dssp SSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSS
T ss_pred HccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccc
Confidence 777777777777777777765555554 67777777777777666653 345566667788877744
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=8.6e-31 Score=263.73 Aligned_cols=273 Identities=21% Similarity=0.231 Sum_probs=220.3
Q ss_pred CCCCccEEeccCCCCCCcCC----CCCCCCCEEECCCC-------------CCCCEEECcCCccccccccc--ccCCCCC
Q 013403 5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRK--FVKSCNL 65 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~--~~~l~~L 65 (443)
++++|++|++++|.+.+.++ ..+++|++|++++| ++|++|++++|.+++..+.. |.++++|
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence 68899999999999986553 56789999999998 78999999999999866655 8999999
Q ss_pred CEEEccCCcCCCCCCcc-ccCCCCCcEEEcccCCCCCCCchhhhCC----------------------------------
Q 013403 66 TSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEIL---------------------------------- 110 (443)
Q Consensus 66 ~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~L---------------------------------- 110 (443)
++|++++|.+++..|.. +.++++|++|++++|.+++..|..+..+
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 99999999999877876 8899999999999999998777666543
Q ss_pred CCCcEEEeecccCcCCCCCCC-----------------------------------Ccc--CCCCCcEEEccCCcccccc
Q 013403 111 PELQVLILRSNRFWGPIGENT-----------------------------------TIV--PFPSLRIIDLSHNEFTGVL 153 (443)
Q Consensus 111 ~~L~~L~L~~N~l~~~~~~~~-----------------------------------~~~--~l~~L~~L~Ls~n~l~~~~ 153 (443)
++|++|++++|.+++..+..+ .+. ..++|+.|++++|.+++..
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 678888888887654222100 001 2368999999999999876
Q ss_pred chhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCE
Q 013403 154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 233 (443)
Q Consensus 154 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 233 (443)
+.. +..++.|+.++...... .......+..+++|+.|++++|.+++..|..+..+++|++
T Consensus 292 ~~~-~~~l~~L~~L~Ls~n~l-------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 292 KSV-FSHFTDLEQLTLAQNEI-------------------NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp TTT-TTTCTTCCEEECTTSCC-------------------CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred hhh-cccCCCCCEEECCCCcc-------------------cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 644 55666666555422211 1111222334789999999999999888999999999999
Q ss_pred EecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCCC
Q 013403 234 LNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGS 297 (443)
Q Consensus 234 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~ 297 (443)
|+|++|++++..|..+.++++|++|++++|++++..+..+..+++|+.|++++|+++|.+|...
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred EECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 9999999998889999999999999999999998777788999999999999999999998653
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.1e-31 Score=279.24 Aligned_cols=302 Identities=19% Similarity=0.186 Sum_probs=214.0
Q ss_pred CCCCccEEeccCCCCCCcCC---CCCCCCCEEECCCC---------------------CCCCEEECcCCcccccccc--c
Q 013403 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN---------------------LTHKVLDMRMNNFNGKIPR--K 58 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n---------------------~~L~~LdLs~n~l~~~~p~--~ 58 (443)
++++|++|++++|.+.+.+| ..+++|+.|++++| ++|++|++++|+++ .+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 58999999999999999888 56788999999988 47899999999998 7888 8
Q ss_pred ccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCC-CcEEEeecccCcCCCCCCCCccCCC
Q 013403 59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE-LQVLILRSNRFWGPIGENTTIVPFP 137 (443)
Q Consensus 59 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~-L~~L~L~~N~l~~~~~~~~~~~~l~ 137 (443)
++++++|++|++++|.++|.+| .|+++++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+....++
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 9999999999999999988888 8888888888888888887 47777888888 888888888876 556554222344
Q ss_pred CCcEEEccCCccccccchhhHH------hHhhhhccCCCcccccccCCC--CCCCcceeEEEEe---ccchhhhHh----
Q 013403 138 SLRIIDLSHNEFTGVLLTGYLD------NFKAMMHGNNISVEVDYMTPL--NSSNYYESIILTI---KGIDIKMER---- 202 (443)
Q Consensus 138 ~L~~L~Ls~n~l~~~~~~~~~~------~l~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~---- 202 (443)
+|+.|++++|.+++..|..+.. .+..|+.+.........+... .....+..+.... ..++...+.
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 7777777777777665543210 222333332211111111000 0001111111111 111111111
Q ss_pred ---hhccccEEEccCCcCCCCCchhcC--CCCCCCEEecCCCcCCCCCCccccCCCCCCeeec------CCCcCCCCCcc
Q 013403 203 ---ILTIFMTIDLSSNKFQGGIPEVVG--KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDL------SSNMLVGHIPT 271 (443)
Q Consensus 203 ---~~~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~ 271 (443)
.+++|+.|++++|+++ .+|..+. .+++|++|+|++|++++ +|..+.++++|+.|++ ++|++.+.+|.
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 1237888999999888 6777776 88899999999999986 7888888999999988 45778888888
Q ss_pred cccCCCCCCeEeCcCCcCcCCCCCCCCCCCcCCCccCCCCCCC
Q 013403 272 QLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLC 314 (443)
Q Consensus 272 ~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc 314 (443)
.+..+++|+.|++++|++ +.+|.... ..+....+.+|+..|
T Consensus 561 ~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred HHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence 888899999999999999 58887633 556666667776554
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=9.6e-31 Score=265.17 Aligned_cols=301 Identities=17% Similarity=0.145 Sum_probs=239.5
Q ss_pred cEEeccCCCCCCcCCCCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCC
Q 013403 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (443)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (443)
+.++.+++.++.++..-..+++.|+|++| ++|++|+|++|.+++..|.+|.++++|++|+|++|.++
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 57889999998877666789999999998 78999999999999888999999999999999999999
Q ss_pred CCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchh
Q 013403 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (443)
Q Consensus 77 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 156 (443)
+..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..+ ..+++|+.|++++|++++..+ .
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~-~ 170 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF--SGLNSLEQLTLEKCNLTSIPT-E 170 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS--TTCTTCCEEEEESCCCSSCCH-H
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc--cCCCCCCEEECCCCcCcccCh-h
Confidence 6666678999999999999999999888999999999999999999988777665 889999999999999987654 3
Q ss_pred hHHhHhhhhccCCCcccccccCC--CCCCCcceeEEEEecc----chhhhHhhhccccEEEccCCcCCCCCchhcCCCCC
Q 013403 157 YLDNFKAMMHGNNISVEVDYMTP--LNSSNYYESIILTIKG----IDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL 230 (443)
Q Consensus 157 ~~~~l~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~ 230 (443)
.+..++.|+.+.........+.. ......+..+...... ++..... ..+|+.|++++|++++..+..+..+++
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHHHhcCccc
Confidence 36666666665543322222111 1111122233322211 1111111 348999999999999766678999999
Q ss_pred CCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCC--CCCCCcCCCccC
Q 013403 231 LKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG--SQFNTFPNDSYV 308 (443)
Q Consensus 231 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~--~~~~~~~~~~~~ 308 (443)
|+.|+|++|.+++..+..+.++++|+.|+|++|++.+..|..|..+++|+.|++++|++++ +|.. ..+..+....+.
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILD 328 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC-CCGGGBSCGGGCCEEECC
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce-eCHhHcCCCcccCEEEcc
Confidence 9999999999998888889999999999999999999889999999999999999999994 4443 223445556666
Q ss_pred CCCCCCC
Q 013403 309 GNSGLCG 315 (443)
Q Consensus 309 gn~~lcg 315 (443)
+|+..|.
T Consensus 329 ~N~l~c~ 335 (477)
T 2id5_A 329 SNPLACD 335 (477)
T ss_dssp SSCEECS
T ss_pred CCCccCc
Confidence 6666554
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2e-30 Score=270.54 Aligned_cols=120 Identities=20% Similarity=0.150 Sum_probs=83.1
Q ss_pred CCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEc
Q 013403 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L 70 (443)
+++++|++++|.+++..+ ..+++|+.|++++| ++|++|+|++|.+++..|.+|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 557777777777776665 45666777777766 56777777777777666777777777777777
Q ss_pred cCCcCCCCCCccccCCCCCcEEEcccCCCCC-CCchhhhCCCCCcEEEeecccCcCC
Q 013403 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGP 126 (443)
Q Consensus 71 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~L~~L~~L~L~~N~l~~~ 126 (443)
++|.+++..+..|+++++|++|++++|.+++ .+|..++.+++|++|++++|.+++.
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 7777775555667777777777777777764 3566677777777777777665543
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=4.4e-31 Score=275.47 Aligned_cols=285 Identities=21% Similarity=0.199 Sum_probs=225.9
Q ss_pred CccEEeccCCCCCCcCC---CCCCCCCEEECCCC------------CCCCEEECcCCcccccccccccCCCCCCEEEccC
Q 013403 8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (443)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~ 72 (443)
+|+.|++++|.+++..+ ..+++|+.|++++| ++|++|++++|.+++..|..+.++++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 78999999999998877 56788999999888 6889999999999887788889999999999999
Q ss_pred CcCCCCCCcc-ccCCCCCcEEEcccCCCCCCC--chhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCcc
Q 013403 73 NRLEGPLPPS-LVNCHHLEVLNVGNNQINDNF--PNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (443)
Q Consensus 73 n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~--p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l 149 (443)
|.+++.+|.. +.++++|++|++++|.+++.. |..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF--KECPQLELLDLAFTRL 412 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT--TTCTTCSEEECTTCCE
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh--cCCccCCeEECCCCcC
Confidence 9888766654 888999999999999988755 6778889999999999998887777665 7888999999999998
Q ss_pred ccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCC---CchhcC
Q 013403 150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG---IPEVVG 226 (443)
Q Consensus 150 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~---~p~~l~ 226 (443)
++..+...+..++.|+.++...... .......+..+++|+.|++++|++++. .+..+.
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l-------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 473 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLL-------------------DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCC-------------------BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG
T ss_pred CCcccchhhhCcccCCEEECCCCcc-------------------CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc
Confidence 8776655556666665554422111 111222334478899999999998862 336688
Q ss_pred CCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCC-CCCCCcCCC
Q 013403 227 KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG-SQFNTFPND 305 (443)
Q Consensus 227 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~~~~~~~ 305 (443)
.+++|++|++++|++++..|..++++++|+.|++++|++++..|..+..++.| .|++++|++++..|.. ..+..+...
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552 (606)
T ss_dssp GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence 89999999999999998889999999999999999999999999999999999 9999999999665543 223344445
Q ss_pred ccCCCCCCC
Q 013403 306 SYVGNSGLC 314 (443)
Q Consensus 306 ~~~gn~~lc 314 (443)
++.||+..|
T Consensus 553 ~l~~N~~~c 561 (606)
T 3t6q_A 553 NLRQNPLDC 561 (606)
T ss_dssp ECTTCCEEC
T ss_pred eCCCCCccc
Confidence 555555444
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=7.7e-32 Score=258.19 Aligned_cols=230 Identities=25% Similarity=0.351 Sum_probs=207.3
Q ss_pred CCCCccEEeccC-CCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccc
Q 013403 5 GIATLYYLDLSN-NFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (443)
Q Consensus 5 ~~~~L~~L~Ls~-n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 83 (443)
++++|++|++++ |.+++.+|..+.++. +|++|++++|.+++.+|..|.++++|++|++++|.+++.+|..|
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~--------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLT--------QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCT--------TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCC--------CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence 578999999995 999998886666664 44999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEcccCCCCCCCchhhhCCC-CCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHh
Q 013403 84 VNCHHLEVLNVGNNQINDNFPNWLEILP-ELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK 162 (443)
Q Consensus 84 ~~l~~L~~L~Ls~N~l~~~~p~~~~~L~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 162 (443)
.++++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+ ..++ |+.|++++|.+++..+..+
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~-L~~L~Ls~N~l~~~~~~~~----- 217 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN-LAFVDLSRNMLEGDASVLF----- 217 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC-CSEEECCSSEEEECCGGGC-----
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc-ccEEECcCCcccCcCCHHH-----
Confidence 9999999999999999988999999998 99999999999998888766 6676 9999999999997765431
Q ss_pred hhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCC
Q 013403 163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (443)
Q Consensus 163 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 242 (443)
..+++|+.|++++|++++.+|. +..+++|++|++++|+++
T Consensus 218 ---------------------------------------~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 218 ---------------------------------------GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp ---------------------------------------CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCE
T ss_pred ---------------------------------------hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCccc
Confidence 1267899999999999977766 888999999999999999
Q ss_pred CCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCc-CcC
Q 013403 243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ-FEG 291 (443)
Q Consensus 243 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~g 291 (443)
+.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+ +.|
T Consensus 258 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 999999999999999999999999999986 889999999999998 444
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.9e-30 Score=270.67 Aligned_cols=289 Identities=20% Similarity=0.129 Sum_probs=182.8
Q ss_pred CCCCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEE
Q 013403 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L 68 (443)
++++|++|++++|.++++.| ..+++|++|++++| ++|++|++++|.+++..+..|+++++|++|
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence 67888888888888888766 56678888888887 678888888888887666778888888888
Q ss_pred EccCCcCCC-CCCccccCCCCCcEEEcccCCCCCCCchhhhC--------------------------------------
Q 013403 69 NLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI-------------------------------------- 109 (443)
Q Consensus 69 ~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-------------------------------------- 109 (443)
++++|.+++ .+|..|+++++|++|++++|.+++..|..++.
T Consensus 134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~ 213 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213 (606)
T ss_dssp ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred eCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccC
Confidence 888888875 56788888888888888888776644432221
Q ss_pred --------------------------------------------------------------------------------
Q 013403 110 -------------------------------------------------------------------------------- 109 (443)
Q Consensus 110 -------------------------------------------------------------------------------- 109 (443)
T Consensus 214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~ 293 (606)
T 3vq2_A 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293 (606)
T ss_dssp CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEE
T ss_pred CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEec
Confidence
Q ss_pred ------------CCCCcEEEeecccCcCCCCC------------------CCCccCCCCCcEEEccCCcccccc--chhh
Q 013403 110 ------------LPELQVLILRSNRFWGPIGE------------------NTTIVPFPSLRIIDLSHNEFTGVL--LTGY 157 (443)
Q Consensus 110 ------------L~~L~~L~L~~N~l~~~~~~------------------~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~ 157 (443)
+++|++|++++|.+ +.+|. ...+..+++|+.|++++|.+++.. +. .
T Consensus 294 ~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~ 371 (606)
T 3vq2_A 294 GVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSY-S 371 (606)
T ss_dssp SCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCH-H
T ss_pred CccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhh-h
Confidence 12233333333333 22221 012245678888888888887663 32 2
Q ss_pred HHhHhhhhccCCCcccccc----cCCCCCC----------------------CcceeEEEEe---ccchhhhHhhhcccc
Q 013403 158 LDNFKAMMHGNNISVEVDY----MTPLNSS----------------------NYYESIILTI---KGIDIKMERILTIFM 208 (443)
Q Consensus 158 ~~~l~~L~~~~~~~~~~~~----~~~~~~~----------------------~~~~~~~~~~---~~~~~~~~~~~~~L~ 208 (443)
+..++.|+.++........ +...... ..+..+.... .......+..+++|+
T Consensus 372 ~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp HHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred hccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence 4555555554432221111 1111100 1111111111 111122233456677
Q ss_pred EEEccCCcCCC-CCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCC
Q 013403 209 TIDLSSNKFQG-GIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 287 (443)
Q Consensus 209 ~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 287 (443)
.|++++|.+++ .+|..++.+++|++|++++|++++..|..++++++|++|++++|++++..|..+..+++|+.|++++|
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 77777777765 35666777777777777777777777777777777777777777777777777777777777788777
Q ss_pred cCcCCCCCC
Q 013403 288 QFEGPIPRG 296 (443)
Q Consensus 288 ~l~g~iP~~ 296 (443)
+++ .+|..
T Consensus 532 ~l~-~~p~~ 539 (606)
T 3vq2_A 532 RIE-TSKGI 539 (606)
T ss_dssp CCC-CEESC
T ss_pred cCc-ccCHh
Confidence 777 56654
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.6e-29 Score=240.05 Aligned_cols=235 Identities=23% Similarity=0.283 Sum_probs=163.3
Q ss_pred CccEEeccCCCCCCcCCCCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEccCCc
Q 013403 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (443)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~ 74 (443)
+++.++++++.++..+....++++.|++++| ++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 7888888888888765444455655555554 455566666666555555555556666666666665
Q ss_pred CCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcC--CCCCCCCccCCCCCcEEEccCCccccc
Q 013403 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG--PIGENTTIVPFPSLRIIDLSHNEFTGV 152 (443)
Q Consensus 75 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 152 (443)
++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+.. +..+++|+.|++++|.++..
T Consensus 112 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 112 LK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA--FQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp CS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG--GGGCTTCCEEECCSSCCCSC
T ss_pred CC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh--ccCCCCcCEEECCCCccccC
Confidence 55 4444332 455666666666555555555556666666666655532 22222 25555666666665555432
Q ss_pred cchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCC
Q 013403 153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 232 (443)
Q Consensus 153 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 232 (443)
.. . ..++|+.|++++|++++..|..+..+++|+
T Consensus 187 ~~-~----------------------------------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 219 (330)
T 1xku_A 187 PQ-G----------------------------------------------LPPSLTELHLDGNKITKVDAASLKGLNNLA 219 (330)
T ss_dssp CS-S----------------------------------------------CCTTCSEEECTTSCCCEECTGGGTTCTTCC
T ss_pred Cc-c----------------------------------------------ccccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 11 0 136799999999999988899999999999
Q ss_pred EEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCC
Q 013403 233 GLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296 (443)
Q Consensus 233 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~ 296 (443)
+|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..
T Consensus 220 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~-~~~~~ 281 (330)
T 1xku_A 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSN 281 (330)
T ss_dssp EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTT
T ss_pred EEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC-ccChh
Confidence 9999999999888888999999999999999998 78888999999999999999998 44443
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=7.5e-30 Score=251.91 Aligned_cols=295 Identities=21% Similarity=0.177 Sum_probs=195.7
Q ss_pred cCCCCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCE
Q 013403 4 LGIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67 (443)
Q Consensus 4 ~~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~ 67 (443)
+.++++++|++++|.++.+++ ..+++|+.|++++| ++|++|++++|.+++..|..|.++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 356888999999998887766 45677777777766 56777777777777666667777777777
Q ss_pred EEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCC
Q 013403 68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHN 147 (443)
Q Consensus 68 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n 147 (443)
|++++|.++...+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.. +..+++|+.+++++|
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYN 196 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-----GGGCTTCSEEECCSS
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-----cccccccceeecccc
Confidence 777777777433344677777777777777777766666777777777777777765431 255666777777766
Q ss_pred ccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccch-hhhHhhhccccEEEccCCcCCCCCchhcC
Q 013403 148 EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID-IKMERILTIFMTIDLSSNKFQGGIPEVVG 226 (443)
Q Consensus 148 ~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~ 226 (443)
.+++.... ..++.+.........+... .......+....+.+. ......+++|+.|++++|.+++..|..+.
T Consensus 197 ~l~~~~~~------~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 197 LLSTLAIP------IAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp CCSEEECC------SSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cccccCCC------CcceEEECCCCeeeecccc-ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 66543211 1122221111111000000 0001111111111111 12344578899999999999988888899
Q ss_pred CCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCCCCCCCcCCCc
Q 013403 227 KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDS 306 (443)
Q Consensus 227 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~ 306 (443)
.+++|++|++++|++++ +|..+..+++|++|++++|++. .+|..+..+++|+.|++++|+++ .+|. ..+..+....
T Consensus 270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~~-~~~~~L~~L~ 345 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL-STHHTLKNLT 345 (390)
T ss_dssp TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCCC-CTTCCCSEEE
T ss_pred ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeCc-hhhccCCEEE
Confidence 99999999999999984 5666778899999999999988 56777888899999999999998 4442 2344555556
Q ss_pred cCCCCCCC
Q 013403 307 YVGNSGLC 314 (443)
Q Consensus 307 ~~gn~~lc 314 (443)
..+|+.-|
T Consensus 346 l~~N~~~~ 353 (390)
T 3o6n_A 346 LSHNDWDC 353 (390)
T ss_dssp CCSSCEEH
T ss_pred cCCCCccc
Confidence 66665554
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.4e-29 Score=261.02 Aligned_cols=125 Identities=23% Similarity=0.201 Sum_probs=100.1
Q ss_pred CCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEc
Q 013403 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L 70 (443)
++|++|++++|.+++..| ..+++|++|++++| ++|++||+++|.+++..|..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 578899999999888766 56788888888888 67888999999888777777888888999999
Q ss_pred cCCcCCC-CCCccccCCCCCcEEEcccCCCCCCCc-hhhhCCCCCcEEEeecccCcCCCCCCC
Q 013403 71 NGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENT 131 (443)
Q Consensus 71 ~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~L~~L~~L~L~~N~l~~~~~~~~ 131 (443)
++|.+++ ..|..++++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 8888885 356778888888888888887433343 578888888888888888877666544
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=9.9e-30 Score=268.88 Aligned_cols=264 Identities=20% Similarity=0.185 Sum_probs=193.6
Q ss_pred CCCCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-----------------CCCCEEECcCCcccccccccccCCCC
Q 013403 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKFVKSCN 64 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-----------------~~L~~LdLs~n~l~~~~p~~~~~l~~ 64 (443)
++++|++|++++|.+++..+ ..+++|+.|++++| ++|+.|++++|++++..|.+|..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 46788888888888888766 55677888888876 36888888888888877888888888
Q ss_pred CCEEEccCCcCCCCCC-ccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCc--CCCCCCCCccCCCCCcE
Q 013403 65 LTSLNLNGNRLEGPLP-PSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW--GPIGENTTIVPFPSLRI 141 (443)
Q Consensus 65 L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~ 141 (443)
|++|++++|.+++.+| ..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+. +..|..+ ..+++|+.
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~ 484 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTI 484 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCE
Confidence 8888888888876555 56888888888888888888777778888888888888888775 3455544 77888888
Q ss_pred EEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCC
Q 013403 142 IDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGI 221 (443)
Q Consensus 142 L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 221 (443)
|++++|++++..+.. + ..+++|+.|++++|++++..
T Consensus 485 L~Ls~N~l~~i~~~~-~-------------------------------------------~~l~~L~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 485 LDLSNNNIANINDDM-L-------------------------------------------EGLEKLEILDLQHNNLARLW 520 (680)
T ss_dssp EECCSSCCCCCCTTT-T-------------------------------------------TTCTTCCEEECCSSCCGGGG
T ss_pred EECCCCCCCcCChhh-h-------------------------------------------ccccccCEEeCCCCCccccc
Confidence 888888887654432 1 12567788888888876431
Q ss_pred --------chhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCC
Q 013403 222 --------PEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPI 293 (443)
Q Consensus 222 --------p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i 293 (443)
+..+..+++|+.|+|++|+++...+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++++..
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 223677788888888888888554556788888888888888888666666778888888888888888544
Q ss_pred CCCC--CCCCcCCCccCCCCCCC
Q 013403 294 PRGS--QFNTFPNDSYVGNSGLC 314 (443)
Q Consensus 294 P~~~--~~~~~~~~~~~gn~~lc 314 (443)
|... .+..+...++.+|++.|
T Consensus 601 ~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 601 KKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp HHHHHHHHTTCSEEECTTCCCCB
T ss_pred hhHhcccccccCEEEccCCCccc
Confidence 4321 23334444444444443
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=262.76 Aligned_cols=94 Identities=26% Similarity=0.317 Sum_probs=66.8
Q ss_pred hhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCC-CCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCC
Q 013403 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT-GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS 280 (443)
Q Consensus 202 ~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 280 (443)
..+++|+.|++++|.+++..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|+
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 34566777777777777666777777777777777777776 45677777777777777777777766677777777777
Q ss_pred eEeCcCCcCcCCCCC
Q 013403 281 VLNLSYNQFEGPIPR 295 (443)
Q Consensus 281 ~L~Ls~N~l~g~iP~ 295 (443)
.|++++|++++..|.
T Consensus 498 ~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 498 VLNMASNQLKSVPDG 512 (570)
T ss_dssp EEECCSSCCSCCCTT
T ss_pred EEeCCCCcCCCCCHH
Confidence 777777777754443
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=2.3e-29 Score=269.40 Aligned_cols=298 Identities=18% Similarity=0.182 Sum_probs=206.9
Q ss_pred CCCCccEEeccCCCCCCcCC---CCCCCCCEEECCCCC----------------------CCCEEECcCCcccccccc--
Q 013403 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSNL----------------------THKVLDMRMNNFNGKIPR-- 57 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n~----------------------~L~~LdLs~n~l~~~~p~-- 57 (443)
++++|++|+|++|.+.+.+| ..+++|+.|++++|. +|++|+|++|+++ .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 68999999999999999888 678899999999985 8999999999999 8888
Q ss_pred cccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCC-CcEEEeecccCcCCCCCCCCccCC
Q 013403 58 KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE-LQVLILRSNRFWGPIGENTTIVPF 136 (443)
Q Consensus 58 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~-L~~L~L~~N~l~~~~~~~~~~~~l 136 (443)
.|+++++|++|+|++|.++ .+| .|+++++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+.....
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence 8999999999999999999 888 8999999999999999999 58888999998 999999999987 56665522233
Q ss_pred CCCcEEEccCCccccccchhh--HH--hHhhhhccCCCcccccccCCC--CCCCcceeEEE---EeccchhhhHh-----
Q 013403 137 PSLRIIDLSHNEFTGVLLTGY--LD--NFKAMMHGNNISVEVDYMTPL--NSSNYYESIIL---TIKGIDIKMER----- 202 (443)
Q Consensus 137 ~~L~~L~Ls~n~l~~~~~~~~--~~--~l~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~----- 202 (443)
++|+.|++++|++++..+.-. .. ....|+.+.........+... .....+..+.. .+..++...+.
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence 448888888888877544210 11 011222222211111100000 00001111111 11112221111
Q ss_pred --hhccccEEEccCCcCCCCCchhcC--CCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCC------CcCCCCCccc
Q 013403 203 --ILTIFMTIDLSSNKFQGGIPEVVG--KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSS------NMLVGHIPTQ 272 (443)
Q Consensus 203 --~~~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~ 272 (443)
.+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+|++ |++.+.+|..
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 1237777888887777 6666665 77788888888888775 677777778888887765 6677777777
Q ss_pred ccCCCCCCeEeCcCCcCcCCCCCCCCCCCcCCCccCCCC
Q 013403 273 LTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNS 311 (443)
Q Consensus 273 ~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~ 311 (443)
+..+++|+.|++++|++ +.+|... ...+...+..+|+
T Consensus 802 l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNP 838 (876)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCT
T ss_pred HhcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCC
Confidence 77778888888888887 5777753 2344444555554
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.2e-30 Score=271.43 Aligned_cols=297 Identities=19% Similarity=0.215 Sum_probs=201.3
Q ss_pred CCCCccEEeccCCCCCCc-----------------CC---C--CCCCCCEEECCCC-------------CCCCEEECcCC
Q 013403 5 GIATLYYLDLSNNFLTNI-----------------EY---F--PPTNMTQLNFDSN-------------LTHKVLDMRMN 49 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~-----------------~~---~--~~~~L~~L~Ls~n-------------~~L~~LdLs~n 49 (443)
++++|++|+|++|.+++. +| . .+++|+.|++++| ++|++|++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 688999999999999994 55 4 6778888888877 67888888888
Q ss_pred c-ccc-cccccccCC------CCCCEEEccCCcCCCCCCc--cccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEee
Q 013403 50 N-FNG-KIPRKFVKS------CNLTSLNLNGNRLEGPLPP--SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (443)
Q Consensus 50 ~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~ 119 (443)
+ ++| .+|..++++ ++|++|++++|.++ .+|. .++++++|++|++++|.+++.+| .++.+++|++|+++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 7 887 778777766 78888888888888 7777 78888888888888888886677 77788888888888
Q ss_pred cccCcCCCCCCCCccCCCC-CcEEEccCCccccccchhhHHhH--hhhhccCCCccccccc--CCCC-------CCCcce
Q 013403 120 SNRFWGPIGENTTIVPFPS-LRIIDLSHNEFTGVLLTGYLDNF--KAMMHGNNISVEVDYM--TPLN-------SSNYYE 187 (443)
Q Consensus 120 ~N~l~~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~~~~~~~~~~~~--~~~~-------~~~~~~ 187 (443)
+|.++ .+|..+ ..+++ |+.|++++|.++ .+|.. +... +.|+.+.......... .... ....+.
T Consensus 362 ~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 362 YNQIT-EIPANF--CGFTEQVENLSFAHNKLK-YIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp SSEEE-ECCTTS--EEECTTCCEEECCSSCCS-SCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred CCccc-cccHhh--hhhcccCcEEEccCCcCc-ccchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 88876 556554 77777 888888888887 34432 2222 2344433322211110 0000 011122
Q ss_pred eEEE---EeccchhhhHhhhccccEEEccCCcCCCCCchhc-CCC-------CCCCEEecCCCcCCCCCCcccc--CCCC
Q 013403 188 SIIL---TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-GKL-------NLLKGLNISHNNLTGDIPSSLR--NLTE 254 (443)
Q Consensus 188 ~~~~---~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l-~~l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~~ 254 (443)
.+.. .+..++...+..+++|+.|++++|+++ .+|... ... ++|+.|+|++|+++ .+|..+. .+++
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 514 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY 514 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCC
Confidence 2222 223344445555777888888888887 444433 222 27888888888887 5777665 7888
Q ss_pred CCeeecCCCcCCCCCcccccCCCCCCeEeC------cCCcCcCCCCCCC-CCCCcCCCccCCCC
Q 013403 255 VESLDLSSNMLVGHIPTQLTSLKYLSVLNL------SYNQFEGPIPRGS-QFNTFPNDSYVGNS 311 (443)
Q Consensus 255 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~g~iP~~~-~~~~~~~~~~~gn~ 311 (443)
|+.|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|... .+..+......+|.
T Consensus 515 L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 8888888888886 7777778888888888 4566777777652 34444555555554
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.9e-29 Score=263.83 Aligned_cols=117 Identities=20% Similarity=0.301 Sum_probs=92.3
Q ss_pred hccccEEEccCCcC-CCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeE
Q 013403 204 LTIFMTIDLSSNKF-QGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 282 (443)
Q Consensus 204 ~~~L~~L~Ls~N~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 282 (443)
++.++.|++++|++ .+..|..+..+++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++|++|
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence 45677777877763 34567788899999999999999999889999999999999999999998888899999999999
Q ss_pred eCcCCcCcCCCCCCCC-C-CCcCCCccCCCCCCCCCCCCCCCCCCC
Q 013403 283 NLSYNQFEGPIPRGSQ-F-NTFPNDSYVGNSGLCGFPLLESCNIDE 326 (443)
Q Consensus 283 ~Ls~N~l~g~iP~~~~-~-~~~~~~~~~gn~~lcg~p~~~~C~~~~ 326 (443)
|+++|++++..|.... + ..+...+..+ +|+.|+|...|
T Consensus 548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~------Np~~C~C~~~~ 587 (635)
T 4g8a_A 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQ------NDFACTCEHQS 587 (635)
T ss_dssp ECTTSCCCBCCSSCTTCCCTTCCEEECTT------CCBCCSGGGHH
T ss_pred ECCCCcCCCCCHHHHHhhhCcCCEEEeeC------CCCcccCCcHH
Confidence 9999999977776432 2 2334444444 45556786543
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.4e-29 Score=264.04 Aligned_cols=272 Identities=20% Similarity=0.196 Sum_probs=230.2
Q ss_pred CCCCccEEeccCCCCCCcCC--CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccc-cccCCCCCCEE
Q 013403 5 GIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPR-KFVKSCNLTSL 68 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~-~~~~l~~L~~L 68 (443)
++++|++|++++|.++..++ ..+++|+.|++++| ++|++|++++|.+.+.+|. .+.++++|++|
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 57899999999999996654 67889999999998 7899999999999977765 58999999999
Q ss_pred EccCCcCCCCC--CccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccC
Q 013403 69 NLNGNRLEGPL--PPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH 146 (443)
Q Consensus 69 ~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 146 (443)
++++|.+++.. |..+.++++|++|++++|.+++..|..+..+++|++|++++|.+.+..+.. .+..+++|+.|++++
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-PFQNLHLLKVLNLSH 434 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-TTTTCTTCCEEECTT
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-hhhCcccCCEEECCC
Confidence 99999999665 778999999999999999999988999999999999999999998776544 237899999999999
Q ss_pred CccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcC
Q 013403 147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG 226 (443)
Q Consensus 147 n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~ 226 (443)
|.+++..+.. +..++.|+.+........... .........+++|+.|++++|++++..|..+.
T Consensus 435 n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~----------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 497 (606)
T 3t6q_A 435 SLLDISSEQL-FDGLPALQHLNLQGNHFPKGN----------------IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497 (606)
T ss_dssp CCCBTTCTTT-TTTCTTCCEEECTTCBCGGGE----------------ECSSCGGGGCTTCCEEECTTSCCCEECTTTTT
T ss_pred CccCCcCHHH-HhCCCCCCEEECCCCCCCccc----------------cccchhhccCCCccEEECCCCccCccChhhhc
Confidence 9998776644 555666665554221110000 00012234478999999999999998899999
Q ss_pred CCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCC
Q 013403 227 KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPR 295 (443)
Q Consensus 227 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~ 295 (443)
.+++|++|++++|++++..|..+.++++| .|++++|++++..|..+..+++|+.+++++|++++.++.
T Consensus 498 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 99999999999999999999999999999 999999999999999999999999999999999987664
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.9e-29 Score=262.58 Aligned_cols=295 Identities=21% Similarity=0.174 Sum_probs=196.6
Q ss_pred cCCCCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCE
Q 013403 4 LGIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67 (443)
Q Consensus 4 ~~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~ 67 (443)
+.+++++.+++++|.++.+++ ..+++|+.|+|++| ++|++|+|++|.+++..|..|+++++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 356778888888888877766 44667777777666 56777777777777666666777777777
Q ss_pred EEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCC
Q 013403 68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHN 147 (443)
Q Consensus 68 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n 147 (443)
|+|++|.+++..+..|+++++|++|++++|.+++..|..++.+++|++|++++|.+++.. +..+++|+.|++++|
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYN 202 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSS
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccC
Confidence 777777777544445677777777777777777766667777777777777777765531 245666777777766
Q ss_pred ccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccch-hhhHhhhccccEEEccCCcCCCCCchhcC
Q 013403 148 EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID-IKMERILTIFMTIDLSSNKFQGGIPEVVG 226 (443)
Q Consensus 148 ~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~ 226 (443)
.+++.... ..+..+.........+..... ..+..+....+.+. ......+++|+.|+|++|.+++.+|..++
T Consensus 203 ~l~~l~~~------~~L~~L~ls~n~l~~~~~~~~-~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 203 LLSTLAIP------IAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp CCSEEECC------TTCSEEECCSSCCCEEECSCC-SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ccccccCC------chhheeeccCCcccccccccC-CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 66543211 112222211111110000000 01111111111111 13345588999999999999988899999
Q ss_pred CCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCCCCCCCcCCCc
Q 013403 227 KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDS 306 (443)
Q Consensus 227 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~ 306 (443)
.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|++++ +|. ..+..+....
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~~~L~~L~ 351 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LKL-STHHTLKNLT 351 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CCC-CTTCCCSEEE
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cCh-hhcCCCCEEE
Confidence 99999999999999985 5777788999999999999998 677788889999999999999984 342 2344555556
Q ss_pred cCCCCCCC
Q 013403 307 YVGNSGLC 314 (443)
Q Consensus 307 ~~gn~~lc 314 (443)
+.+|+.-|
T Consensus 352 l~~N~~~~ 359 (597)
T 3oja_B 352 LSHNDWDC 359 (597)
T ss_dssp CCSSCEEH
T ss_pred eeCCCCCC
Confidence 66666554
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=8.9e-29 Score=253.39 Aligned_cols=111 Identities=19% Similarity=0.298 Sum_probs=64.5
Q ss_pred CCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEc
Q 013403 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L 70 (443)
++|++|++++|.+++..| ..+++|+.|++++| ++|++|||++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 456666666666666554 45566666666665 55666666666665 34444 5566666666
Q ss_pred cCCcCCC-CCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCC--cEEEeecccC
Q 013403 71 NGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPEL--QVLILRSNRF 123 (443)
Q Consensus 71 ~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L--~~L~L~~N~l 123 (443)
++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 6666654 345566666666666666666554 234444444 5555555555
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.1e-28 Score=236.21 Aligned_cols=246 Identities=20% Similarity=0.200 Sum_probs=159.7
Q ss_pred CccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCC
Q 013403 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (443)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 87 (443)
+++.++++++.++.++....+++ ++|++++|.+++..|..|.++++|++|++++|.+++..|.+|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l-----------~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDT-----------TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR 102 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTC-----------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred cCCEEECCCCCccccCCCCCCCC-----------eEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence 57888888888876544334444 5555666666555555566666666666666666655555566666
Q ss_pred CCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCcccc--ccchhhHHhHhhhh
Q 013403 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG--VLLTGYLDNFKAMM 165 (443)
Q Consensus 88 ~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~ 165 (443)
+|++|++++|.++. +|..+. ++|++|++++|.+.+..+..+ ..+++|+.|++++|.++. ..+.. +..+ .++
T Consensus 103 ~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~ 175 (332)
T 2ft3_A 103 KLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVF--SGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLN 175 (332)
T ss_dssp TCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGG--SSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCS
T ss_pred CCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHh--CCCccCCEEECCCCccccCCCCccc-ccCC-ccC
Confidence 66666666666654 333332 556666666666544333222 555666666666665542 21111 1111 222
Q ss_pred ccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCC
Q 013403 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245 (443)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 245 (443)
.++... +.+.. ++.. ..+.|+.|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus 176 ~L~l~~---n~l~~----------------l~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 176 YLRISE---AKLTG----------------IPKD---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CCBCCS---SBCSS----------------CCSS---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred EEECcC---CCCCc----------------cCcc---ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 221110 00110 0000 1357899999999999888889999999999999999999888
Q ss_pred CccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCC
Q 013403 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPR 295 (443)
Q Consensus 246 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~ 295 (443)
+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++ +|.
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~-~~~ 281 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK-VGV 281 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB-CCT
T ss_pred hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc-cCh
Confidence 888999999999999999998 788889999999999999999984 443
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.5e-29 Score=239.88 Aligned_cols=226 Identities=17% Similarity=0.230 Sum_probs=156.8
Q ss_pred CCCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccC
Q 013403 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN 85 (443)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 85 (443)
.++++.|+|++|.++.+ |..+.++. +|++|+|++|.++ .+|..++++++|++|++++|.++ .+|..+.+
T Consensus 80 ~~~l~~L~L~~n~l~~l-p~~l~~l~--------~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~ 148 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQF-PDQAFRLS--------HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS 148 (328)
T ss_dssp STTCCEEEEESSCCSSC-CSCGGGGT--------TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG
T ss_pred ccceeEEEccCCCchhc-ChhhhhCC--------CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc
Confidence 36677777777777643 32333333 3377777777777 67777777777777777777777 66777777
Q ss_pred CCCCcEEEcccCCCCCCCchhhhC---------CCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchh
Q 013403 86 CHHLEVLNVGNNQINDNFPNWLEI---------LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (443)
Q Consensus 86 l~~L~~L~Ls~N~l~~~~p~~~~~---------L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 156 (443)
+++|++|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..+ +.+++|++|++++|.+++..+ .
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l--~~l~~L~~L~L~~N~l~~l~~-~ 224 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI--ANLQNLKSLKIRNSPLSALGP-A 224 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG--GGCTTCCEEEEESSCCCCCCG-G
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh--cCCCCCCEEEccCCCCCcCch-h
Confidence 777777777777766666665543 777777777777775 455443 667777777777777765322 1
Q ss_pred hHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEec
Q 013403 157 YLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236 (443)
Q Consensus 157 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 236 (443)
+ ..+++|+.|++++|++.+.+|..++.+++|++|++
T Consensus 225 -l-------------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 225 -I-------------------------------------------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp -G-------------------------------------------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred -h-------------------------------------------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 1 11566777777777777777777777777777777
Q ss_pred CCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCc
Q 013403 237 SHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 237 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 290 (443)
++|++.+.+|..++++++|++|++++|.+.+.+|..+..+++|+.+++..|.+.
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 777777777777777777777777777777777777777777777777766554
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.2e-28 Score=254.85 Aligned_cols=157 Identities=24% Similarity=0.328 Sum_probs=114.1
Q ss_pred cCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccch--hhhHhhhccccEEE
Q 013403 134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID--IKMERILTIFMTID 211 (443)
Q Consensus 134 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~ 211 (443)
..+++|++|++++|.+++..+.. +..++.|+.+...... +..++ ...+..+++|+.|+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~-------------------l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNG-------------------LKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSC-------------------CCBTTHHHHTTTTCTTCCEEE
T ss_pred cCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCC-------------------cCCcccchhhhcCCCCCCEEE
Confidence 56789999999999999866644 4455555544432111 11111 12234478999999
Q ss_pred ccCCcCCCCCch-hcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCc
Q 013403 212 LSSNKFQGGIPE-VVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 212 Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 290 (443)
+++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 999999985554 578899999999999999887776654 79999999999998 67777779999999999999999
Q ss_pred CCCCCC--CCCCCcCCCccCCCCCCC
Q 013403 291 GPIPRG--SQFNTFPNDSYVGNSGLC 314 (443)
Q Consensus 291 g~iP~~--~~~~~~~~~~~~gn~~lc 314 (443)
.+|.. ..+..+......+|+..|
T Consensus 487 -~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 487 -SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp -CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred -CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 67775 233344444555554444
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=6.3e-28 Score=255.06 Aligned_cols=322 Identities=20% Similarity=0.152 Sum_probs=212.3
Q ss_pred CCCccEEeccCCCCCCcCCCCC-----CCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCE
Q 013403 6 IATLYYLDLSNNFLTNIEYFPP-----TNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67 (443)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~~~-----~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~ 67 (443)
.++|+.|++++|.+++..+..+ ++|+.|++++| ++|++|++++|++++..|..|.++++|++
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (680)
T 1ziw_A 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence 4678888888888887776433 34888888877 67888888888888777777777777777
Q ss_pred EEccCCcCCC-----CCCc----cccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeeccc----------------
Q 013403 68 LNLNGNRLEG-----PLPP----SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR---------------- 122 (443)
Q Consensus 68 L~L~~n~l~~-----~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~---------------- 122 (443)
|++++|...+ .+|. .|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~ 380 (680)
T 1ziw_A 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380 (680)
T ss_dssp EECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT
T ss_pred EeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccccc
Confidence 7777665443 2332 56677777777777777777666667777766666666554
Q ss_pred ------------CcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCC--CCCCCccee
Q 013403 123 ------------FWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP--LNSSNYYES 188 (443)
Q Consensus 123 ------------l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~--~~~~~~~~~ 188 (443)
+++..+..+ ..+++|+.|++++|.+++..+...+..++.++.+.........+.. ......+..
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 458 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAF--SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCE
T ss_pred CcCceEECCCCCCCeEChhhh--hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccccc
Confidence 333333333 5667777777777777665554445555555554442222111110 000111111
Q ss_pred EEEEec-----cchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCC--------CccccCCCCC
Q 013403 189 IILTIK-----GIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI--------PSSLRNLTEV 255 (443)
Q Consensus 189 ~~~~~~-----~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--------p~~~~~l~~L 255 (443)
+..... +..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++.. +..+.++++|
T Consensus 459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred chhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence 111111 111223445788999999999999888888999999999999999998542 2347889999
Q ss_pred CeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCCC--CCCCcCCCccCCCC-------------------CCC
Q 013403 256 ESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGS--QFNTFPNDSYVGNS-------------------GLC 314 (443)
Q Consensus 256 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~--~~~~~~~~~~~gn~-------------------~lc 314 (443)
++|++++|+++...+..|..+++|+.|++++|+++ .+|... .+..+......+|. .+.
T Consensus 539 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECT
T ss_pred CEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEcc
Confidence 99999999999555567899999999999999999 566542 23344443444441 245
Q ss_pred CCCCCCCCCC-CCCCCC
Q 013403 315 GFPLLESCNI-DEAPEP 330 (443)
Q Consensus 315 g~p~~~~C~~-~~~~~~ 330 (443)
++|+.|+|.. .|...+
T Consensus 618 ~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 618 FNPFDCTCESIAWFVNW 634 (680)
T ss_dssp TCCCCBCCCCCSSEECC
T ss_pred CCCcccCCccHHHHHHH
Confidence 8899999985 554433
No 29
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.2e-29 Score=236.64 Aligned_cols=229 Identities=19% Similarity=0.145 Sum_probs=199.5
Q ss_pred cEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCC
Q 013403 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89 (443)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 89 (443)
++++.+++.++.++.... ++|++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~~-----------~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 82 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIP-----------AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82 (285)
T ss_dssp CEEECCSSCCSSCCTTCC-----------TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred eEEEcCcCCcccCCcCCC-----------CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCC
Confidence 578889998887654333 244788999999998777889999999999999999998889999999999
Q ss_pred cEEEcccCC-CCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccC
Q 013403 90 EVLNVGNNQ-INDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN 168 (443)
Q Consensus 90 ~~L~Ls~N~-l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~ 168 (443)
++|++++|. ++...|..+..+++|++|++++|.+++..+..+ ..+++|++|++++|++++..+..+
T Consensus 83 ~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~----------- 149 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQALPDDTF----------- 149 (285)
T ss_dssp CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTT-----------
T ss_pred CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCcccccCHhHh-----------
Confidence 999999997 888778899999999999999999988777665 889999999999999986543221
Q ss_pred CCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCcc
Q 013403 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSS 248 (443)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 248 (443)
..+++|+.|++++|++++..+..+..+++|++|++++|.+++..|..
T Consensus 150 ---------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 196 (285)
T 1ozn_A 150 ---------------------------------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196 (285)
T ss_dssp ---------------------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ---------------------------------ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH
Confidence 12678999999999999777778999999999999999999888999
Q ss_pred ccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCC
Q 013403 249 LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPR 295 (443)
Q Consensus 249 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~ 295 (443)
+.++++|+.|++++|++++..+..+..+++|+.|++++|++.+..+.
T Consensus 197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 99999999999999999987778899999999999999999876554
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3.5e-29 Score=268.08 Aligned_cols=296 Identities=19% Similarity=0.225 Sum_probs=216.2
Q ss_pred CCCCccEEeccCCCCCCc-----------------CC---C--CCCCCCEEECCCC-------------CCCCEEECcCC
Q 013403 5 GIATLYYLDLSNNFLTNI-----------------EY---F--PPTNMTQLNFDSN-------------LTHKVLDMRMN 49 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~-----------------~~---~--~~~~L~~L~Ls~n-------------~~L~~LdLs~n 49 (443)
++++|++|+|++|.+++. +| . .+++|+.|+|++| ++|++|+|++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 678999999999999992 45 4 6889999999888 68999999999
Q ss_pred c-ccc-cccccccCCC-------CCCEEEccCCcCCCCCCc--cccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEe
Q 013403 50 N-FNG-KIPRKFVKSC-------NLTSLNLNGNRLEGPLPP--SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (443)
Q Consensus 50 ~-l~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L 118 (443)
+ ++| .+|..++++. +|++|++++|.++ .+|. .|+++++|++|++++|.++ .+| .++.+++|+.|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 8 888 7888776655 9999999999999 8888 8999999999999999998 577 8889999999999
Q ss_pred ecccCcCCCCCCCCccCCCC-CcEEEccCCccccccchhhHHhHhh--hhccCCCccccccc-CCCC------CCCccee
Q 013403 119 RSNRFWGPIGENTTIVPFPS-LRIIDLSHNEFTGVLLTGYLDNFKA--MMHGNNISVEVDYM-TPLN------SSNYYES 188 (443)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~l~~--L~~~~~~~~~~~~~-~~~~------~~~~~~~ 188 (443)
++|.++ .+|..+ ..+++ |+.|++++|.++ .+|.. +..... |+.+.......... .... ....+..
T Consensus 603 s~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~L~-~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 603 DYNQIE-EIPEDF--CAFTDQVEGLGFSHNKLK-YIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp CSSCCS-CCCTTS--CEECTTCCEEECCSSCCC-SCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred cCCccc-cchHHH--hhccccCCEEECcCCCCC-cCchh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 999987 666655 78888 999999999988 44432 232221 44443322211110 0000 0011222
Q ss_pred EEE---EeccchhhhHhhhccccEEEccCCcCCCCCchhcCCC--------CCCCEEecCCCcCCCCCCcccc--CCCCC
Q 013403 189 IIL---TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL--------NLLKGLNISHNNLTGDIPSSLR--NLTEV 255 (443)
Q Consensus 189 ~~~---~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l--------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L 255 (443)
+.. .+..++...+..+++|+.|+|++|+++ .+|..+... ++|+.|+|++|+++ .+|..+. .+++|
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence 222 223344555556788889999998888 555544332 28889999999888 6777776 88899
Q ss_pred CeeecCCCcCCCCCcccccCCCCCCeEeCcC------CcCcCCCCCCC-CCCCcCCCccCCCC
Q 013403 256 ESLDLSSNMLVGHIPTQLTSLKYLSVLNLSY------NQFEGPIPRGS-QFNTFPNDSYVGNS 311 (443)
Q Consensus 256 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~g~iP~~~-~~~~~~~~~~~gn~ 311 (443)
+.|+|++|++++ +|..+..+++|+.|++++ |++.+.+|... .+..+....+.+|.
T Consensus 756 ~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 999999998886 788888888999998876 77787888652 34445555555554
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.3e-28 Score=247.80 Aligned_cols=237 Identities=21% Similarity=0.168 Sum_probs=162.9
Q ss_pred cEEeccCCCCCCcCCCCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCC
Q 013403 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (443)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (443)
..++.+++.++.++..-.++++.|+|++| ++|++|+|++|.+++..+..|.++++|++|+|++|.++
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence 45566666665544333334444433333 34566666666666666666666666666666666666
Q ss_pred CCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchh
Q 013403 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (443)
Q Consensus 77 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 156 (443)
+..+..|.++++|++|+|++|.++...+..|..+++|++|++++|+..+.++.. .+..+++|+.|++++|++++...
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~-- 213 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNIKDMPN-- 213 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCCSSCCC--
T ss_pred ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCccccccc--
Confidence 555555666666666666666666655556666666666666664433333322 12566666666666666654310
Q ss_pred hHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEec
Q 013403 157 YLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236 (443)
Q Consensus 157 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 236 (443)
...+++|+.|+|++|++++..|..|..+++|+.|++
T Consensus 214 --------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 249 (452)
T 3zyi_A 214 --------------------------------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249 (452)
T ss_dssp --------------------------------------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEEC
T ss_pred --------------------------------------------ccccccccEEECcCCcCcccCcccccCccCCCEEEe
Confidence 012677889999999999888888999999999999
Q ss_pred CCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCC
Q 013403 237 SHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPI 293 (443)
Q Consensus 237 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i 293 (443)
++|++++..+..|.++++|+.|+|++|++++..+..+..+++|+.|++++|++.+..
T Consensus 250 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 250 MNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred CCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 999998888888899999999999999998777778888999999999999887543
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=4.7e-29 Score=269.64 Aligned_cols=281 Identities=19% Similarity=0.181 Sum_probs=186.7
Q ss_pred CCCccEEeccCCCCCCcCC---CCCCCCCEEECCCC--------------CCCCEEECcCCcccccccccccCCCCCCEE
Q 013403 6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (443)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n--------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L 68 (443)
.+++++|||++|.|+++.+ ..+++|+.|++++| ++|++|+|++|.+++..|.+|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 4789999999999998876 66778888888877 678888888888888888888888888888
Q ss_pred EccCCcCCCCCCcc--ccCCCCCcEEEcccCCCCCCCc-hhhhCCCCCcEEEeecccCcCCCCCCCCccCC--CCCcEEE
Q 013403 69 NLNGNRLEGPLPPS--LVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENTTIVPF--PSLRIID 143 (443)
Q Consensus 69 ~L~~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p-~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l--~~L~~L~ 143 (443)
+|++|.+++..|.. |+++++|++|+|++|.+++..+ ..|+.+++|++|++++|.+++..+..+ ..+ ++|+.|+
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l--~~l~~~~L~~L~ 180 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL--EPLQGKTLSFFS 180 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG--HHHHHCSSCCCE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc--ccccCCccceEE
Confidence 88888888766655 8888888888888888877544 568888888888888888876655443 323 4455555
Q ss_pred ccCCccccccchhhHHhHh------hhhccCCCccc-----------------------------------------ccc
Q 013403 144 LSHNEFTGVLLTGYLDNFK------AMMHGNNISVE-----------------------------------------VDY 176 (443)
Q Consensus 144 Ls~n~l~~~~~~~~~~~l~------~L~~~~~~~~~-----------------------------------------~~~ 176 (443)
++.|.+.+..+..+ ..+. .++.++..... ...
T Consensus 181 L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 181 LAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp ECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred CCCCccccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 55554444332211 0000 01111110000 000
Q ss_pred cCCCCCCCcceeEEEE---eccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCC
Q 013403 177 MTPLNSSNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLT 253 (443)
Q Consensus 177 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 253 (443)
+.... ......+... +.......+..+++|+.|+|++|++++..|..+..+++|++|+|++|.+++..|..+.+++
T Consensus 260 f~~l~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 260 FAGLA-RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTT-TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hhccc-cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 00000 0001111111 1111222334467778888888888777777777788888888888888777777788888
Q ss_pred CCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCc
Q 013403 254 EVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 254 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 290 (443)
+|+.|++++|++.+..+..|..+++|+.|++++|+++
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 8888888888887666777777888888888888776
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.6e-29 Score=235.78 Aligned_cols=228 Identities=20% Similarity=0.211 Sum_probs=116.1
Q ss_pred cEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCC--CCCccccCCC
Q 013403 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG--PLPPSLVNCH 87 (443)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~ 87 (443)
+.++.+++.++.++....+++ ++|++++|.++...+..|.++++|++|++++|.++. ..|..+..++
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l-----------~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 78 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSA-----------TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTC-----------CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS
T ss_pred CEEEcCCCCcccCCCCCCCCC-----------CEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc
Confidence 456666666665543333333 455555555553333345555666666666665552 1244455556
Q ss_pred CCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhcc
Q 013403 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHG 167 (443)
Q Consensus 88 ~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~ 167 (443)
+|++|++++|.++. +|..+..+++|++|++++|.+++..+. ..+..+++|++|++++|.+++..+..+
T Consensus 79 ~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~---------- 146 (306)
T 2z66_A 79 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIF---------- 146 (306)
T ss_dssp CCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTT-TTTTTCTTCCEEECTTSCCEECSTTTT----------
T ss_pred ccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccc-hhhhhccCCCEEECCCCcCCccchhhc----------
Confidence 66666666665554 444455556666666666655443321 112555566666666655554332210
Q ss_pred CCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCC-CCchhcCCCCCCCEEecCCCcCCCCCC
Q 013403 168 NNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG-GIPEVVGKLNLLKGLNISHNNLTGDIP 246 (443)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p 246 (443)
..+++|+.|++++|.+++ ..|..+..+++|++|++++|++++..|
T Consensus 147 ----------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 192 (306)
T 2z66_A 147 ----------------------------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192 (306)
T ss_dssp ----------------------------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred ----------------------------------ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH
Confidence 013445555555555543 344445555555555555555554444
Q ss_pred ccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCC
Q 013403 247 SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294 (443)
Q Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP 294 (443)
..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 555555555555555555554444444555555555555555554444
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=250.58 Aligned_cols=278 Identities=20% Similarity=0.185 Sum_probs=194.5
Q ss_pred cEEeccCCCCCCcCCCCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCC
Q 013403 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (443)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (443)
++||+++|.+++++....++++.|++++| ++|++|+|++|++++..|..|+++++|++|++++|.++
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 68999999999766555589999999999 78999999999999888999999999999999999999
Q ss_pred CCCCccccCCCCCcEEEcccCCCCC-CCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCC--cEEEccCCcc--cc
Q 013403 77 GPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL--RIIDLSHNEF--TG 151 (443)
Q Consensus 77 ~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L--~~L~Ls~n~l--~~ 151 (443)
.+|.. .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++. .+..+++| +.|++++|.+ ++
T Consensus 83 -~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 83 -KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp -EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEEEEECTTTTSS
T ss_pred -ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-----hccccccceeeEEEeecccccccc
Confidence 67766 89999999999999998 4789999999999999999998652 23667777 8889888887 44
Q ss_pred ccchhhHHh--------------------------HhhhhccCCCc----------------------------------
Q 013403 152 VLLTGYLDN--------------------------FKAMMHGNNIS---------------------------------- 171 (443)
Q Consensus 152 ~~~~~~~~~--------------------------l~~L~~~~~~~---------------------------------- 171 (443)
..+.. +.. ++.++.++...
T Consensus 155 ~~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 155 EDPEG-LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp CCTTT-TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred ccccc-ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence 44332 111 11111111000
Q ss_pred --------------------ccccccC-CC---------CCCCcceeEEEEeccc--h-hhh------------------
Q 013403 172 --------------------VEVDYMT-PL---------NSSNYYESIILTIKGI--D-IKM------------------ 200 (443)
Q Consensus 172 --------------------~~~~~~~-~~---------~~~~~~~~~~~~~~~~--~-~~~------------------ 200 (443)
.....+. .. .....+.........+ + ..+
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc
Confidence 0000000 00 0001111111111111 0 000
Q ss_pred ------HhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCC--CCCccccCCCCCCeeecCCCcCCCCCccc
Q 013403 201 ------ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG--DIPSSLRNLTEVESLDLSSNMLVGHIPTQ 272 (443)
Q Consensus 201 ------~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 272 (443)
...+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..++.+++|++|++++|++.+.+|..
T Consensus 314 l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence 1345677788888888877777777778888888888888775 44566777788888888888877655543
Q ss_pred -ccCCCCCCeEeCcCCcCcCCCCCC
Q 013403 273 -LTSLKYLSVLNLSYNQFEGPIPRG 296 (443)
Q Consensus 273 -~~~l~~L~~L~Ls~N~l~g~iP~~ 296 (443)
+..+++|+.|++++|++++.+|..
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred hhccCccCCEEECcCCCCCcchhhh
Confidence 667777777788777777666554
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=9.2e-29 Score=255.88 Aligned_cols=143 Identities=22% Similarity=0.189 Sum_probs=103.8
Q ss_pred CCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEc
Q 013403 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L 70 (443)
+++++||+++|.++++.+ ..+++|+.|++++| ++|++|+|++|.+++..|.+|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 468888888888887765 56777888888877 67888888888888777778888888888888
Q ss_pred cCCcCCCCCCccccCCCCCcEEEcccCCCCC-CCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCC----cEEEcc
Q 013403 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL----RIIDLS 145 (443)
Q Consensus 71 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L----~~L~Ls 145 (443)
++|.+++..+..|+++++|++|++++|.+++ .+|..++.+++|++|++++|.+++..+..+ +.+++| +.++++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL--RVLHQMPLLNLSLDLS 185 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG--HHHHTCTTCCCEEECT
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc--cchhccchhhhhcccC
Confidence 8888885555567888888888888888876 357778888888888888887765544332 334444 455555
Q ss_pred CCcccc
Q 013403 146 HNEFTG 151 (443)
Q Consensus 146 ~n~l~~ 151 (443)
+|.+++
T Consensus 186 ~n~l~~ 191 (570)
T 2z63_A 186 LNPMNF 191 (570)
T ss_dssp TCCCCE
T ss_pred CCCcee
Confidence 555443
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.9e-28 Score=244.43 Aligned_cols=238 Identities=21% Similarity=0.176 Sum_probs=170.7
Q ss_pred ccEEeccCCCCCCcCCCCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcC
Q 013403 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRL 75 (443)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l 75 (443)
.+.++.+++.++.++..-.++++.|+|++| ++|++|+|++|++++..+..|.++++|++|+|++|.+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 345666666666555444445544444444 4557777777777766667777777777777777777
Q ss_pred CCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccch
Q 013403 76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155 (443)
Q Consensus 76 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 155 (443)
++..+..|.++++|++|++++|.++...+..|..+++|++|++++|+..+.++.. .+..+++|++|++++|+++....
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~- 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLREIPN- 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCSSCCC-
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCccccc-
Confidence 7555556777777777777777777655566777777777777775443433332 23667777777777777663310
Q ss_pred hhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEe
Q 013403 156 GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235 (443)
Q Consensus 156 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 235 (443)
...+++|+.|+|++|++++..|..|..+++|+.|+
T Consensus 203 ---------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 203 ---------------------------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp ---------------------------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ---------------------------------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence 01167788899999998888888888899999999
Q ss_pred cCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCC
Q 013403 236 ISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPI 293 (443)
Q Consensus 236 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i 293 (443)
|++|++++..+..|.++++|+.|+|++|++++..+..+..+++|+.|++++|++.+..
T Consensus 238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 9999998888888888999999999999998777777888899999999999887543
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.1e-27 Score=232.41 Aligned_cols=287 Identities=20% Similarity=0.256 Sum_probs=194.4
Q ss_pred CCCCccEEeccCCCCCCcCC-CCCCCCCEEECCCC-----------CCCCEEECcCCcccccccccccCCCCCCEEEccC
Q 013403 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~Ls~n-----------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~ 72 (443)
.+++|++|++++|.++.... ..+++|+.|++++| ++|++|++++|.+++ ++ .+.++++|++|++++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNE 119 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTT
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcC
Confidence 46788888888888877654 66788888888887 688888998888874 33 688888899999988
Q ss_pred CcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccc
Q 013403 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (443)
Q Consensus 73 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 152 (443)
|.+++ ++. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++.
T Consensus 120 n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 120 DNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp SCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCC
T ss_pred CcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCccccc
Confidence 88884 444 7888888888888886655444 47888888888888888765443 37788888888888888765
Q ss_pred cchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEe---ccchhhhHhhhccccEEEccCCcCCCCCchhcCCCC
Q 013403 153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTI---KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229 (443)
Q Consensus 153 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~ 229 (443)
.+ +..++.++.+.....................+.... ...+. ...+++|+.|++++|.+++. ..+..++
T Consensus 193 ~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~ 265 (347)
T 4fmz_A 193 SP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT 265 (347)
T ss_dssp GG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred cc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCC
Confidence 43 444455544443222111111111111111111111 11111 34467788888888887743 3577788
Q ss_pred CCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCCCCCCCcCCCccCC
Q 013403 230 LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVG 309 (443)
Q Consensus 230 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~g 309 (443)
+|++|++++|++++. ..+..+++|+.|++++|++.+..|..+..+++|+.|++++|++++..| ...+..+...++.+
T Consensus 266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFAN 342 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSC
T ss_pred CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhh
Confidence 888888888888753 357778888888888888877777778888888888888888875544 33344444455555
Q ss_pred C
Q 013403 310 N 310 (443)
Q Consensus 310 n 310 (443)
|
T Consensus 343 N 343 (347)
T 4fmz_A 343 Q 343 (347)
T ss_dssp C
T ss_pred h
Confidence 4
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3.7e-28 Score=234.05 Aligned_cols=209 Identities=16% Similarity=0.222 Sum_probs=189.1
Q ss_pred CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEe
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L 118 (443)
+.++.|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 56799999999998 78888999999999999999999 89999999999999999999999 58999999999999999
Q ss_pred ecccCcCCCCCCCC-------ccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEE
Q 013403 119 RSNRFWGPIGENTT-------IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL 191 (443)
Q Consensus 119 ~~N~l~~~~~~~~~-------~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (443)
++|++.+.+|..+. +..+++|++|++++|+++ .+|.. +
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l--------------------------------- 202 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS-I--------------------------------- 202 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG-G---------------------------------
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh-h---------------------------------
Confidence 99999898887652 234999999999999998 43432 1
Q ss_pred EeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcc
Q 013403 192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPT 271 (443)
Q Consensus 192 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 271 (443)
..+++|+.|++++|++++ +|..+..+++|++|++++|++.+.+|..++++++|++|++++|.+.+.+|.
T Consensus 203 ----------~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 203 ----------ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp ----------GGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred ----------cCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 126789999999999995 666799999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCeEeCcCCcCcCCCCCC
Q 013403 272 QLTSLKYLSVLNLSYNQFEGPIPRG 296 (443)
Q Consensus 272 ~~~~l~~L~~L~Ls~N~l~g~iP~~ 296 (443)
.+..+++|+.|++++|++.+.+|+.
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred hhhcCCCCCEEeCCCCCchhhccHH
Confidence 9999999999999999999999975
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.7e-28 Score=254.00 Aligned_cols=282 Identities=20% Similarity=0.215 Sum_probs=217.3
Q ss_pred CCCCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEE
Q 013403 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L 68 (443)
++++|++|+|++|.+++..+ ..+++|+.|+|++| ++|++|+|++|.+++..+..|.++++|++|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 47899999999999999876 67889999999988 789999999999997666678999999999
Q ss_pred EccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCC-CCCC-------------Ccc
Q 013403 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI-GENT-------------TIV 134 (443)
Q Consensus 69 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~-~~~~-------------~~~ 134 (443)
+|++|.+++..|..|+++++|++|++++|.+++.. +..+++|+.|++++|.+++.. +..+ ...
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence 99999999888889999999999999999998853 345566666666666554311 0000 001
Q ss_pred CCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccC
Q 013403 135 PFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSS 214 (443)
Q Consensus 135 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 214 (443)
..++|+.|++++|.+++. ..+..++.|..++..... +.+..+..+..+++|+.|+|++
T Consensus 230 ~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~-------------------l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 230 VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE-------------------LEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-------------------CCEEESGGGTTCSSCCEEECTT
T ss_pred cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCc-------------------cCCCCHHHhcCccCCCEEECCC
Confidence 235789999999998875 335556666555442211 1111223334588999999999
Q ss_pred CcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCC
Q 013403 215 NKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294 (443)
Q Consensus 215 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP 294 (443)
|.+++ +|..+..+++|+.|+|++|.++ .+|..++.+++|+.|++++|.+.+. | +..+++|+.|++++|+++|..+
T Consensus 288 N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 288 NRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp SCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence 99995 6777788999999999999999 6788889999999999999999855 3 6778999999999999987543
Q ss_pred CCCCCCCcCCCccCCCCCCCCCC
Q 013403 295 RGSQFNTFPNDSYVGNSGLCGFP 317 (443)
Q Consensus 295 ~~~~~~~~~~~~~~gn~~lcg~p 317 (443)
.. .+..+....+.++...|+.+
T Consensus 363 ~~-~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 363 RA-LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp HH-HTTTCCTTTBCCCCCCCCTT
T ss_pred HH-HHHHHhhhccccccccCCcc
Confidence 32 34455555677888888754
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=238.22 Aligned_cols=229 Identities=20% Similarity=0.215 Sum_probs=188.3
Q ss_pred CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEe
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L 118 (443)
++++.|+|++|++++..+..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|.++...+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 67899999999998888888999999999999999998777788999999999999999998876777888999999999
Q ss_pred ecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchh
Q 013403 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (443)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (443)
++|.+.+..+..+ ..+++|+.|++++|+..+.++...
T Consensus 144 ~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~----------------------------------------- 180 (440)
T 3zyj_A 144 RNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGA----------------------------------------- 180 (440)
T ss_dssp CSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTT-----------------------------------------
T ss_pred CCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcch-----------------------------------------
Confidence 9998876655544 788999999998855433332211
Q ss_pred hhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCC
Q 013403 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (443)
Q Consensus 199 ~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 278 (443)
+..+++|+.|++++|+++ .+|. +..+++|++|+|++|++++..|..|.++++|+.|++++|++.+..+..|..+++
T Consensus 181 --~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 181 --FEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp --TTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred --hhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 122678999999999999 5554 789999999999999999888999999999999999999999988999999999
Q ss_pred CCeEeCcCCcCcCCCCCC--CCCCCcCCCccCCCCCCCC
Q 013403 279 LSVLNLSYNQFEGPIPRG--SQFNTFPNDSYVGNSGLCG 315 (443)
Q Consensus 279 L~~L~Ls~N~l~g~iP~~--~~~~~~~~~~~~gn~~lcg 315 (443)
|+.|+|++|+++ .+|.. ..+..+....+.+|+..|+
T Consensus 257 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 257 LVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCccCC
Confidence 999999999999 44543 2344455556666666554
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.9e-27 Score=239.30 Aligned_cols=229 Identities=20% Similarity=0.173 Sum_probs=188.8
Q ss_pred CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEe
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L 118 (443)
+++++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57899999999999888889999999999999999999877888999999999999999999877777888999999999
Q ss_pred ecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchh
Q 013403 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (443)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (443)
++|.+.+..+..+ ..+++|+.|++++|+..+.++...
T Consensus 155 ~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~----------------------------------------- 191 (452)
T 3zyi_A 155 RNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGA----------------------------------------- 191 (452)
T ss_dssp CSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTT-----------------------------------------
T ss_pred CCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhh-----------------------------------------
Confidence 9999876555444 788999999998854333332211
Q ss_pred hhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCC
Q 013403 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (443)
Q Consensus 199 ~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 278 (443)
+..+++|+.|++++|++++ +| .+..+++|++|+|++|++++..|..|.++++|+.|++++|++++..|..|..+++
T Consensus 192 --~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 192 --FEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp --TTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred --ccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 1226789999999999995 44 4789999999999999999988999999999999999999999988999999999
Q ss_pred CCeEeCcCCcCcCCCCCC--CCCCCcCCCccCCCCCCCC
Q 013403 279 LSVLNLSYNQFEGPIPRG--SQFNTFPNDSYVGNSGLCG 315 (443)
Q Consensus 279 L~~L~Ls~N~l~g~iP~~--~~~~~~~~~~~~gn~~lcg 315 (443)
|+.|++++|+++ .+|.. ..+..+....+.+|+..|.
T Consensus 268 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 268 LVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CCEEECCCCcCC-ccChHHhccccCCCEEEccCCCcCCC
Confidence 999999999999 45543 2344455556666666554
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2e-28 Score=238.45 Aligned_cols=267 Identities=15% Similarity=0.126 Sum_probs=165.5
Q ss_pred CCCCccEEeccCCCCCCcCCCCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEcc
Q 013403 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~ 71 (443)
.|+.....+.+++.++.++....++|+.|++++| ++|++|++++|.+++..|..|.++++|++|+++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 4555666788888887766555556766666665 566777777777776666677777777777777
Q ss_pred CCcCCCCCCccccCCCCCcEEEcccCCCCCCCc-hhhhCCCCCcEEEeeccc-CcCCCCCCCCccCCCCCcEEEccCCcc
Q 013403 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNR-FWGPIGENTTIVPFPSLRIIDLSHNEF 149 (443)
Q Consensus 72 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~L~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~Ls~n~l 149 (443)
+|.+++..+..|+++++|++|++++|.++...+ ..+..+++|++|++++|. +.+..+..+ ..+++|++|++++|++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF--AGLTFLEELEIDASDL 186 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTC
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc--cCCCCCCEEECCCCCc
Confidence 777774444447777777777777777776333 356777777777777774 444334433 6677777777777777
Q ss_pred ccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcC---
Q 013403 150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG--- 226 (443)
Q Consensus 150 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~--- 226 (443)
++..+.. +..++.|+.+.... ..+...+......+++|+.|++++|++++..+..+.
T Consensus 187 ~~~~~~~-l~~l~~L~~L~l~~-------------------n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 187 QSYEPKS-LKSIQNVSHLILHM-------------------KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp CEECTTT-TTTCSEEEEEEEEC-------------------SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred CccCHHH-HhccccCCeecCCC-------------------CccccchhhhhhhcccccEEECCCCcccccccccccccc
Confidence 6654433 33333332222100 011122223333466677777777777655443332
Q ss_pred CCCCCCEEecCCCcCCC----CCCccccCCCCCCeeecCCCcCCCCCccc-ccCCCCCCeEeCcCCcCcCCCC
Q 013403 227 KLNLLKGLNISHNNLTG----DIPSSLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQFEGPIP 294 (443)
Q Consensus 227 ~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~g~iP 294 (443)
....++.++++++.+++ .+|..+..+++|+.|++++|+++ .+|.. |..+++|++|++++|+++|.+|
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 34556677777776654 35566677777777777777777 34443 4677777777777777776655
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.4e-27 Score=246.93 Aligned_cols=295 Identities=19% Similarity=0.176 Sum_probs=201.5
Q ss_pred CCCccEEeccCCCCCCcCCCCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEccC
Q 013403 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (443)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~ 72 (443)
+...+++|+++|.+++++....++++.|++++| ++|++|+|++|++++..|.+|.++++|++|++++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 445578999999999866555688999999988 7899999999999988889999999999999999
Q ss_pred CcCCCCCCccccCCCCCcEEEcccCCCCCC-CchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCC--cEEEccCCcc
Q 013403 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL--RIIDLSHNEF 149 (443)
Q Consensus 73 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L--~~L~Ls~n~l 149 (443)
|.++ .+|.. .+++|++|++++|.+++. .|..|+.+++|++|++++|.+++. .+..+++| +.|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEESSC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEeecccc
Confidence 9999 67766 899999999999999873 468899999999999999988652 12555666 8888888887
Q ss_pred --ccccchhhHHh--------------------------HhhhhccCCC-------------------------------
Q 013403 150 --TGVLLTGYLDN--------------------------FKAMMHGNNI------------------------------- 170 (443)
Q Consensus 150 --~~~~~~~~~~~--------------------------l~~L~~~~~~------------------------------- 170 (443)
++..+..+ .. ++.++.++..
T Consensus 182 ~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 182 HIKGGETESL-QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCSSSCCEE-EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred cccccCcccc-cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 44433221 11 0111110000
Q ss_pred ---------------------cccccccC-CCC---------CCCcceeEEEEeccc--h--------------------
Q 013403 171 ---------------------SVEVDYMT-PLN---------SSNYYESIILTIKGI--D-------------------- 197 (443)
Q Consensus 171 ---------------------~~~~~~~~-~~~---------~~~~~~~~~~~~~~~--~-------------------- 197 (443)
......+. ..+ ....+.........+ +
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEES
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccC
Confidence 00000000 000 000111111111111 0
Q ss_pred ----hh-hHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCC--CCccccCCCCCCeeecCCCcCCCCCc
Q 013403 198 ----IK-MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD--IPSSLRNLTEVESLDLSSNMLVGHIP 270 (443)
Q Consensus 198 ----~~-~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p 270 (443)
.. ....+++|++|++++|++++.+|..++.+++|++|++++|++++. +|..++++++|+.|++++|++.+.+|
T Consensus 341 n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 420 (562)
T 3a79_B 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420 (562)
T ss_dssp SCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS
T ss_pred CCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC
Confidence 00 003467888999999998888888888889999999999988863 34668888899999999999887555
Q ss_pred c-cccCCCCCCeEeCcCCcCcCCCCCCCCCCCcCCCccCCC
Q 013403 271 T-QLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGN 310 (443)
Q Consensus 271 ~-~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn 310 (443)
. .+..+++|+.|++++|++++.+|.... ..+...+..+|
T Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N 460 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNN 460 (562)
T ss_dssp SCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSS
T ss_pred hhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCC
Confidence 4 477788888888888888877666432 23344444444
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=4.2e-27 Score=226.90 Aligned_cols=231 Identities=19% Similarity=0.221 Sum_probs=196.5
Q ss_pred CCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEc
Q 013403 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L 70 (443)
+++++|++++|.+++..+ ..+++|++|++++| ++|++|++++|.++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 679999999999999876 56889999999998 78999999999998 5666554 79999999
Q ss_pred cCCcCCCCCCccccCCCCCcEEEcccCCCCC--CCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCc
Q 013403 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQIND--NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (443)
Q Consensus 71 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~ 148 (443)
++|.+++..+..|.++++|++|++++|.++. ..+..+..+++|++|++++|.+++ +|... .++|+.|++++|.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~----~~~L~~L~l~~n~ 203 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL----PPSLTELHLDGNK 203 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC----CTTCSEEECTTSC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc----cccCCEEECCCCc
Confidence 9999997777789999999999999999964 677889999999999999999865 44432 3899999999999
Q ss_pred cccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCC
Q 013403 149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228 (443)
Q Consensus 149 l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l 228 (443)
+++..+..+ ..+++|+.|++++|.+++..+..+..+
T Consensus 204 l~~~~~~~~--------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 204 ITKVDAASL--------------------------------------------KGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp CCEECTGGG--------------------------------------------TTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred CCccCHHHh--------------------------------------------cCCCCCCEEECCCCcCceeChhhccCC
Confidence 987654331 126778999999999998777788899
Q ss_pred CCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccC------CCCCCeEeCcCCcCc
Q 013403 229 NLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTS------LKYLSVLNLSYNQFE 290 (443)
Q Consensus 229 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~ 290 (443)
++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.++.+++++|++.
T Consensus 240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 99999999999998 78888889999999999999998776666643 367889999999886
No 45
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.4e-29 Score=242.46 Aligned_cols=237 Identities=20% Similarity=0.207 Sum_probs=130.6
Q ss_pred CCCccEEeccCCCCCCcCCC-CCCCCCEEECCCC---------------------CCCCEEECcCCcccccccccc--cC
Q 013403 6 IATLYYLDLSNNFLTNIEYF-PPTNMTQLNFDSN---------------------LTHKVLDMRMNNFNGKIPRKF--VK 61 (443)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~-~~~~L~~L~Ls~n---------------------~~L~~LdLs~n~l~~~~p~~~--~~ 61 (443)
.++|+.|++++|.+ .+|. -...++.|++++| ++|++|++++|++++.+|..+ ..
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 45688888888888 4441 1111333333332 345555555555555555443 45
Q ss_pred CCCCCEEEccCCcCCCCCCccccCC-----CCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCC--CCCCCcc
Q 013403 62 SCNLTSLNLNGNRLEGPLPPSLVNC-----HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI--GENTTIV 134 (443)
Q Consensus 62 l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~--~~~~~~~ 134 (443)
+++|++|++++|.+++. |..++.+ ++|++|++++|.+++..|..++.+++|++|++++|++.+.. +....+.
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 55555555555555543 4444444 55555555555555544455555555555555555543321 1111124
Q ss_pred CCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccC
Q 013403 135 PFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSS 214 (443)
Q Consensus 135 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 214 (443)
.+++|++|++++|++++... .....+..+++|+.|++++
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~-----------------------------------------~~~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSG-----------------------------------------VCSALAAARVQLQGLDLSH 237 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHH-----------------------------------------HHHHHHHTTCCCSEEECTT
T ss_pred cCCCCCEEECCCCcCcchHH-----------------------------------------HHHHHHhcCCCCCEEECCC
Confidence 45555555555555542110 0011112246677777777
Q ss_pred CcCCCCCc-hhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcC
Q 013403 215 NKFQGGIP-EVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 291 (443)
Q Consensus 215 N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 291 (443)
|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++||+++|++++. |. +..+++|++|++++|++++
T Consensus 238 N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 77776554 34555677777777777776 5666555 6777777777777754 54 6677777777777777764
No 46
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.3e-27 Score=235.82 Aligned_cols=274 Identities=19% Similarity=0.181 Sum_probs=209.9
Q ss_pred CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcE
Q 013403 25 FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEV 91 (443)
Q Consensus 25 ~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 91 (443)
..+.+++.|++++| ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 35689999999988 79999999999999888889999999999999999999888888999999999
Q ss_pred EEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCc
Q 013403 92 LNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNIS 171 (443)
Q Consensus 92 L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~ 171 (443)
|++++|.++...+..|..+++|++|++++|.+.+..+..+ ..+++|+.|++++|++++.. ...++.++.+....
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSY 195 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--SSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCS
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhc--cCCCCCCEEECCCCcCCccc----cccccccceeeccc
Confidence 9999999998655667899999999999999988777655 88999999999999998763 23344444443322
Q ss_pred ccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccC
Q 013403 172 VEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRN 251 (443)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 251 (443)
.....+.. ......+....+.+........++|+.|++++|++++. ..+..+++|++|++++|.+++..|..+.+
T Consensus 196 n~l~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 196 NLLSTLAI---PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp SCCSEEEC---CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccccccCC---CCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 21111111 11111221111111111112256899999999999864 56889999999999999999888999999
Q ss_pred CCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCC-CCCCCcCCCccCCCC
Q 013403 252 LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNS 311 (443)
Q Consensus 252 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~~~~~~~~~~gn~ 311 (443)
+++|++|++++|++++ +|..+..+++|+.|++++|+++ .+|.. ..+..+......+|.
T Consensus 271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCc
Confidence 9999999999999984 5667788999999999999998 55543 233444445555553
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.2e-28 Score=230.17 Aligned_cols=233 Identities=21% Similarity=0.208 Sum_probs=201.7
Q ss_pred CCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccc--cccccccCCCCCCEEEccCCcCCCCCCcccc
Q 013403 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG--KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (443)
+++++|++++|.++++.+..+.++.. |++|++++|.++. ..+..+.++++|++|++++|.++ .+|..+.
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~--------L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~ 98 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQ--------LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 98 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTT--------CSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEE
T ss_pred CCCCEEECCCCccCccCHhHhhcccc--------CCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcC
Confidence 58999999999999776655666654 4999999999984 34677888999999999999999 6888899
Q ss_pred CCCCCcEEEcccCCCCCCCc-hhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccc-cchhhHHhHh
Q 013403 85 NCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV-LLTGYLDNFK 162 (443)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~p-~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~ 162 (443)
++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. .+.. +
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~---- 171 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDI-F---- 171 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGEECSC-C----
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCccccccchhH-H----
Confidence 99999999999999998554 578999999999999999988777765 8899999999999998762 2211 1
Q ss_pred hhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCC
Q 013403 163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (443)
Q Consensus 163 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 242 (443)
..+++|+.|++++|++++..|..+..+++|++|++++|+++
T Consensus 172 ---------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 172 ---------------------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp ---------------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred ---------------------------------------hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 12678999999999999888999999999999999999999
Q ss_pred CCCCccccCCCCCCeeecCCCcCCCCCcccccCCC-CCCeEeCcCCcCcCCCC
Q 013403 243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK-YLSVLNLSYNQFEGPIP 294 (443)
Q Consensus 243 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~g~iP 294 (443)
+..+..+..+++|+.|++++|++.+..|..+..++ +|+.|++++|++++..+
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 87777899999999999999999999999999884 99999999999997644
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6.2e-28 Score=227.80 Aligned_cols=236 Identities=19% Similarity=0.173 Sum_probs=200.8
Q ss_pred CCCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCc-CCCCCCcccc
Q 013403 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-LEGPLPPSLV 84 (443)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~ 84 (443)
.+++++|++++|.+++..+..+.++.. |++|++++|.+++..|..|.++++|++|++++|. ++...|..|.
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~--------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRN--------LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTT--------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCC--------CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 368999999999999988766666654 4999999999998889999999999999999997 8866688999
Q ss_pred CCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhh
Q 013403 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (443)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 164 (443)
++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|++++..+..+
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~------- 173 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPERAF------- 173 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCEECTTTT-------
T ss_pred CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCcccccCHHHh-------
Confidence 99999999999999999888999999999999999999987666555 889999999999999986543221
Q ss_pred hccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCC
Q 013403 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244 (443)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 244 (443)
..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.
T Consensus 174 -------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 174 -------------------------------------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp -------------------------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred -------------------------------------cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence 1267899999999999988899999999999999999999987
Q ss_pred CCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCC
Q 013403 245 IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296 (443)
Q Consensus 245 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~ 296 (443)
.+..+..+++|+.|++++|.+.+..+.. .....++.++.+.+.+.+..|+.
T Consensus 217 ~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 217 PTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred CHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 7778999999999999999998654421 11233555667788888888875
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.9e-27 Score=244.98 Aligned_cols=283 Identities=19% Similarity=0.174 Sum_probs=199.5
Q ss_pred CCCCccEEeccCCCCCCcCCCCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEcc
Q 013403 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~ 71 (443)
.|+...+.|.+++.++.+++...++++.|++++| ++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 3 ~C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 3 SCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp EECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cCCCCceEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence 4556667899999999887766789999999998 789999999999998888999999999999999
Q ss_pred CCcCCCCCCccccCCCCCcEEEcccCCCCC-CCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccc
Q 013403 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (443)
Q Consensus 72 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 150 (443)
+|.+++..|..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+.++.. .+..+++|++|++++|+++
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCC
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHh-hhhcccccCeeeccCCccc
Confidence 999998777779999999999999999986 35778999999999999999865555532 2388999999999999998
Q ss_pred cccchhhHHh------------------------HhhhhccCCCcccccccC--CC------CC----------------
Q 013403 151 GVLLTGYLDN------------------------FKAMMHGNNISVEVDYMT--PL------NS---------------- 182 (443)
Q Consensus 151 ~~~~~~~~~~------------------------l~~L~~~~~~~~~~~~~~--~~------~~---------------- 182 (443)
+..+.. ++. ++.|+.++.......... .. ..
T Consensus 162 ~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 162 NYQSQS-LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp EECTTT-TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred ccChhh-hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 765543 222 222222221110000000 00 00
Q ss_pred ---------------------------------------CCc-----------------------------ceeEEEE--
Q 013403 183 ---------------------------------------SNY-----------------------------YESIILT-- 192 (443)
Q Consensus 183 ---------------------------------------~~~-----------------------------~~~~~~~-- 192 (443)
... ...+...
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 000 0000000
Q ss_pred -eccchhhhHhhhccccEEEccCCcCCCCCch---hcCCCCCCCEEecCCCcCCCCCC--ccccCCCCCCeeecCCCcCC
Q 013403 193 -IKGIDIKMERILTIFMTIDLSSNKFQGGIPE---VVGKLNLLKGLNISHNNLTGDIP--SSLRNLTEVESLDLSSNMLV 266 (443)
Q Consensus 193 -~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~ 266 (443)
+..++..+++.+++|+.|++++|++++.+|. .++.+++|++|++++|++++..+ ..+..+++|++|++++|+++
T Consensus 321 ~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 0112223334467777777777777765543 35667777777777777765332 44677777888888888777
Q ss_pred CCCcccccCCCCCCeEeCcCCcCc
Q 013403 267 GHIPTQLTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 267 ~~~p~~~~~l~~L~~L~Ls~N~l~ 290 (443)
.+|..+..+++|++|++++|+++
T Consensus 401 -~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 401 -PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp -CCCSCCCCCTTCCEEECTTSCCS
T ss_pred -cCChhhcccccccEEECCCCCcc
Confidence 56667777777777777777776
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=8.8e-27 Score=226.05 Aligned_cols=270 Identities=22% Similarity=0.268 Sum_probs=200.8
Q ss_pred CCCCccEEeccCCCCCCcCC-CCCCCCCEEECCCC-----------CCCCEEECcCCcccccccccccCCCCCCEEEccC
Q 013403 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~Ls~n-----------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~ 72 (443)
.+++|++|++++|.+++..+ ..+++|+.|++++| ++|++|++++|.+++. +. +..+++|++|++++
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGA 141 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTT
T ss_pred hcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCC
Confidence 57899999999999998776 77889999999988 7899999999999854 33 88899999999999
Q ss_pred CcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccc
Q 013403 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (443)
Q Consensus 73 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 152 (443)
|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+++.
T Consensus 142 n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 142 NHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp CTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCC
T ss_pred CCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCC
Confidence 96664444 48888899999999988887443 7788888999988888765433 36777888888888877765
Q ss_pred cchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccch-hhhHhhhccccEEEccCCcCCCCCchhcCCCCCC
Q 013403 153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID-IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231 (443)
Q Consensus 153 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L 231 (443)
.+ +..++.|+.+.........+...........+....+.+. ......+++|+.|++++|++++. ..+..+++|
T Consensus 215 ~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 289 (347)
T 4fmz_A 215 TP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289 (347)
T ss_dssp GG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred ch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence 43 4445555544443222222111111112222222211111 12344588999999999999964 458899999
Q ss_pred CEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCc
Q 013403 232 KGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 232 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 290 (443)
++|++++|.+++..|..++++++|++|++++|.+++..| +..+++|+.|++++|+++
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999998888999999999999999999997666 788999999999999986
No 51
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=8.6e-27 Score=235.43 Aligned_cols=288 Identities=20% Similarity=0.265 Sum_probs=150.1
Q ss_pred CCCCccEEeccCCCCCCcCC-CCCCCCCEEECCCC-----------CCCCEEECcCCcccccccccccCCCCCCEEEccC
Q 013403 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~Ls~n-----------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~ 72 (443)
.+++|++|++++|.+++..+ ..+++|+.|++++| ++|++|++++|.+++..+ +.++++|++|++++
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 143 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEE
T ss_pred hhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCC
Confidence 45677777777777777665 66677777777766 567777777777764432 66777777777777
Q ss_pred CcCCCCCCc--------------------cccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCC
Q 013403 73 NRLEGPLPP--------------------SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTT 132 (443)
Q Consensus 73 n~l~~~~p~--------------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~ 132 (443)
|.+++ ++. .+.++++|++|++++|.+++. + .+..+++|++|++++|.+.+..+
T Consensus 144 n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~---- 216 (466)
T 1o6v_A 144 NTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-S-VLAKLTNLESLIATNNQISDITP---- 216 (466)
T ss_dssp EEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGG----
T ss_pred CccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-h-hhccCCCCCEEEecCCccccccc----
Confidence 77663 221 133444455555555554442 1 24445555555555555444332
Q ss_pred ccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchh-hhHhhhccccEEE
Q 013403 133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI-KMERILTIFMTID 211 (443)
Q Consensus 133 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~ 211 (443)
++.+++|+.|++++|++++.. .+..++.|+.++.................+..+....+.+.. .....+++|+.|+
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 293 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 293 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred ccccCCCCEEECCCCCcccch---hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEE
Confidence 144555555555555554431 123333333333222111111111111111111111111110 0123355666666
Q ss_pred ccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcC
Q 013403 212 LSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 291 (443)
Q Consensus 212 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 291 (443)
+++|++++..+ +..+++|+.|++++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 66666664333 5566666666666666665444 55666666666666666643 346666777777777777766
Q ss_pred CCCCCCCCCCcCCCccCCCC
Q 013403 292 PIPRGSQFNTFPNDSYVGNS 311 (443)
Q Consensus 292 ~iP~~~~~~~~~~~~~~gn~ 311 (443)
..| ...+..+......+|+
T Consensus 368 ~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 368 LTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp CGG-GTTCTTCCEEECCCEE
T ss_pred cch-hhcCCCCCEEeccCCc
Confidence 555 3333444444444443
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=5.1e-27 Score=226.53 Aligned_cols=230 Identities=19% Similarity=0.267 Sum_probs=193.0
Q ss_pred CCccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEc
Q 013403 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L 70 (443)
+++++|++++|.+++..+ ..+++|+.|++++| ++|++|++++|.++ .+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 689999999999998876 67889999999998 78999999999998 5666555 79999999
Q ss_pred cCCcCCCCCCccccCCCCCcEEEcccCCCCC--CCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCc
Q 013403 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQIND--NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (443)
Q Consensus 71 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~ 148 (443)
++|.+++..+..|.++++|++|++++|.++. ..|..+..+ +|++|++++|.+++ +|... .++|+.|++++|.
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~----~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL----PETLNELHLDHNK 204 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS----CSSCSCCBCCSSC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc----cCCCCEEECCCCc
Confidence 9999997777779999999999999999963 677788888 99999999999976 44433 3799999999999
Q ss_pred cccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCC
Q 013403 149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228 (443)
Q Consensus 149 l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l 228 (443)
+++..+..+ ..+++|+.|++++|++++..+..+..+
T Consensus 205 i~~~~~~~l--------------------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 205 IQAIELEDL--------------------------------------------LRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp CCCCCTTSS--------------------------------------------TTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CCccCHHHh--------------------------------------------cCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 987654331 115678888999999988777788889
Q ss_pred CCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccC------CCCCCeEeCcCCcCc
Q 013403 229 NLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTS------LKYLSVLNLSYNQFE 290 (443)
Q Consensus 229 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~ 290 (443)
++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|.. ...|+.+++++|++.
T Consensus 241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 99999999999988 67888888999999999999988766666654 356888999999886
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=2.8e-26 Score=230.66 Aligned_cols=247 Identities=23% Similarity=0.187 Sum_probs=176.1
Q ss_pred CCCCccEEeccCCCCCCcCC-CCCCCCCEEECCCC----------CCCCEEECcCCcccccccccccCCCCCCEEEccCC
Q 013403 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~Ls~n----------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n 73 (443)
++++|++|++++|.+++.+. ..+++|+.|++++| ++|++|++++|.+++. + ++++++|++|++++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSS
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCC
Confidence 47899999999999998743 67889999999888 7899999999999864 3 888999999999999
Q ss_pred cCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCcccccc
Q 013403 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (443)
Q Consensus 74 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 153 (443)
.+++ +| ++++++|++|++++|.+++. + ++.+++|++|++++|...+.++ ++.+++|+.|++++|++++..
T Consensus 117 ~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 117 KLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp CCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSSCCCCCC
T ss_pred cCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCCccceec
Confidence 9985 44 88899999999999999884 3 7888999999999997655552 378899999999999988753
Q ss_pred chhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCE
Q 013403 154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 233 (443)
Q Consensus 154 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 233 (443)
+..++.|+.+.........+ ....+++|+.|++++|++++ +| ++.+++|+.
T Consensus 187 ----l~~l~~L~~L~l~~N~l~~~----------------------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~ 237 (457)
T 3bz5_A 187 ----VSQNKLLNRLNCDTNNITKL----------------------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTY 237 (457)
T ss_dssp ----CTTCTTCCEEECCSSCCSCC----------------------CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSE
T ss_pred ----cccCCCCCEEECcCCcCCee----------------------ccccCCCCCEEECcCCcccc-cC--ccccCCCCE
Confidence 33444444443321111110 01225677777777777775 44 667777777
Q ss_pred EecCCCcCCCCCCccccCCC-------CCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCC
Q 013403 234 LNISHNNLTGDIPSSLRNLT-------EVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPR 295 (443)
Q Consensus 234 L~Ls~N~l~~~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~ 295 (443)
|++++|++++..+..+.++. +|+.|++++|.+.+.+| +..+++|+.|++++|+..|.+|.
T Consensus 238 L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 238 FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp EECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred EEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 77777777765544444443 44555556565555554 34556666666666666555553
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=2.5e-26 Score=240.21 Aligned_cols=287 Identities=22% Similarity=0.221 Sum_probs=207.5
Q ss_pred CccEEeccCCCCCCcCC---CCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEcc
Q 013403 8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71 (443)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~ 71 (443)
++++|||++|.|+++.+ ..+++|+.|+|++| ++|++|+|++|++++..+.+|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 68899999999998876 56788899999988 788999999999987777888999999999999
Q ss_pred CCcCCCCCCccccCCCCCcEEEcccCCCCC-CCchhhhCCCCCcEEEeecccCcCCCCCCC-------------------
Q 013403 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPIGENT------------------- 131 (443)
Q Consensus 72 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~------------------- 131 (443)
+|++++..+..|+++++|++|++++|.++. ..|..++.+++|++|++++|++++..+..+
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 999997666778999999999999998876 357778888889998888876532211000
Q ss_pred --------------------------------------------------------------------------------
Q 013403 132 -------------------------------------------------------------------------------- 131 (443)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (443)
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence
Q ss_pred -------------------------------------------------------------------------CccCCCC
Q 013403 132 -------------------------------------------------------------------------TIVPFPS 138 (443)
Q Consensus 132 -------------------------------------------------------------------------~~~~l~~ 138 (443)
....+++
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~ 372 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 372 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT
T ss_pred ccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccc
Confidence 0012456
Q ss_pred CcEEEccCCcccccc--chhh----------------------HHhHhhhhccCCCcccccc------cCCCC-------
Q 013403 139 LRIIDLSHNEFTGVL--LTGY----------------------LDNFKAMMHGNNISVEVDY------MTPLN------- 181 (443)
Q Consensus 139 L~~L~Ls~n~l~~~~--~~~~----------------------~~~l~~L~~~~~~~~~~~~------~~~~~------- 181 (443)
|+.+++++|.+.... +... +..++.+..+......... +....
T Consensus 373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred cccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 778888888765321 1110 1112222222111000000 00000
Q ss_pred --------------CCCcceeEEEE----eccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCC
Q 013403 182 --------------SSNYYESIILT----IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243 (443)
Q Consensus 182 --------------~~~~~~~~~~~----~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 243 (443)
........... ........+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++
T Consensus 453 s~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~ 532 (635)
T 4g8a_A 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532 (635)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB
T ss_pred cccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC
Confidence 00111111111 111222344558899999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCeeecCCCcCCCCCcccccCC-CCCCeEeCcCCcCcCCCC
Q 013403 244 DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL-KYLSVLNLSYNQFEGPIP 294 (443)
Q Consensus 244 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~g~iP 294 (443)
..|..|.++++|++|||++|++++..|..+..+ ++|+.|++++|++++...
T Consensus 533 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 889999999999999999999999999999888 689999999999997654
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=6.1e-26 Score=229.19 Aligned_cols=135 Identities=26% Similarity=0.299 Sum_probs=99.7
Q ss_pred CCCccEEeccCCCCCCcCC-CCCCCCCEEECCCC-----------CCCCEEECcCCcccccccccccCCCCCCEEEccCC
Q 013403 6 IATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (443)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~Ls~n-----------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n 73 (443)
+++++.|+++++.++.... ..+++|+.|++++| ++|++|++++|.+++..+ +.++++|++|++++|
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC
Confidence 5789999999999987654 67889999999988 789999999999986554 889999999999999
Q ss_pred cCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCcccc
Q 013403 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (443)
Q Consensus 74 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 151 (443)
.+++. +. +.++++|++|++++|.+++ ++ .+..+++|++|+++ |.+.+..+ +..+++|+.|++++|.+++
T Consensus 123 ~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~~----~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 123 QITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLKP----LANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCGG----GTTCTTCCEEECCSSCCCC
T ss_pred CCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCchh----hccCCCCCEEECcCCcCCC
Confidence 99854 43 8899999999999999887 33 35555555555554 22222111 2445555555555555443
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=4e-27 Score=229.24 Aligned_cols=267 Identities=16% Similarity=0.177 Sum_probs=182.8
Q ss_pred CCCCCEEECCCC----------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEccc
Q 013403 27 PTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGN 96 (443)
Q Consensus 27 ~~~L~~L~Ls~n----------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 96 (443)
++.....+.+++ ++|++|++++|++++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 344445666655 6899999999999977777999999999999999999988888899999999999999
Q ss_pred CCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCc-cccccchhhHHhHhhhhccCCCccccc
Q 013403 97 NQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE-FTGVLLTGYLDNFKAMMHGNNISVEVD 175 (443)
Q Consensus 97 N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~~~~~~~~~~ 175 (443)
|.+++..+..+..+++|++|++++|++++. +....+..+++|++|++++|+ +++..+.. +..++.|+.++.....
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~-- 185 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDASD-- 185 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETT--
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCccc-CchhhhccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCCC--
Confidence 999996666799999999999999999754 331224889999999999995 55443322 3333333332221100
Q ss_pred ccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccc---cCC
Q 013403 176 YMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSL---RNL 252 (443)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l 252 (443)
+..........+++|++|++++|+++...+..+..+++|+.|++++|.+++..+..+ ...
T Consensus 186 -----------------l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~ 248 (353)
T 2z80_A 186 -----------------LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248 (353)
T ss_dssp -----------------CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CC
T ss_pred -----------------cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccccc
Confidence 001111122235566666666666653222233446666666666666665444332 234
Q ss_pred CCCCeeecCCCcCCC----CCcccccCCCCCCeEeCcCCcCcCCCCCCC--CCCCcCCCccCCCCCCCC
Q 013403 253 TEVESLDLSSNMLVG----HIPTQLTSLKYLSVLNLSYNQFEGPIPRGS--QFNTFPNDSYVGNSGLCG 315 (443)
Q Consensus 253 ~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~--~~~~~~~~~~~gn~~lcg 315 (443)
..++.++++++.+++ .+|..+..+++|+.|++++|+++ .+|... .+..+....+.+|+..|.
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 556666666666654 35777889999999999999999 778753 445555566666665553
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1e-25 Score=211.50 Aligned_cols=210 Identities=21% Similarity=0.181 Sum_probs=178.1
Q ss_pred CCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEee
Q 013403 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (443)
Q Consensus 40 ~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~ 119 (443)
+|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45888999999998777789999999999999999997777789999999999999999999778889999999999999
Q ss_pred cccCcCCCCCCCCccCCCCCcEEEccCCcccccc-chhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchh
Q 013403 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL-LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (443)
Q Consensus 120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (443)
+|.+.+..+..+ ..+++|++|++++|.+++.. +.. +
T Consensus 109 ~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~-~---------------------------------------- 145 (276)
T 2z62_A 109 ETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-F---------------------------------------- 145 (276)
T ss_dssp TSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG-G----------------------------------------
T ss_pred CCCccccCchhc--ccCCCCCEEECcCCccceecCchh-h----------------------------------------
Confidence 999987666554 88999999999999988642 322 1
Q ss_pred hhHhhhccccEEEccCCcCCCCCchhcCCCCCCC----EEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCccccc
Q 013403 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK----GLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLT 274 (443)
Q Consensus 199 ~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 274 (443)
..+++|+.|++++|++++..+..+..+++|+ .|++++|.+++..+..+. ..+|+.|++++|++++..+..+.
T Consensus 146 ---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 146 ---SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp ---GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTT
T ss_pred ---ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhc
Confidence 1267899999999999987777777766666 899999999966555554 45899999999999977777789
Q ss_pred CCCCCCeEeCcCCcCcCCCCCC
Q 013403 275 SLKYLSVLNLSYNQFEGPIPRG 296 (443)
Q Consensus 275 ~l~~L~~L~Ls~N~l~g~iP~~ 296 (443)
.+++|+.|++++|++++..|..
T Consensus 222 ~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp TCCSCCEEECCSSCBCCCTTTT
T ss_pred ccccccEEEccCCcccccCCch
Confidence 9999999999999999887754
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=5.5e-25 Score=205.97 Aligned_cols=205 Identities=21% Similarity=0.257 Sum_probs=142.1
Q ss_pred CCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeec
Q 013403 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (443)
Q Consensus 41 L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~ 120 (443)
.+.++++++.++ .+|..+. .++++|++++|.+++..+.+|.++++|++|++++|.++...+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 355666666665 3444433 3566666666666655555666666666666666666664445556666666666666
Q ss_pred ccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhh
Q 013403 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM 200 (443)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (443)
|.+.+..+..+ ..+++|++|++++|.+++..+..+
T Consensus 95 n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~------------------------------------------- 129 (270)
T 2o6q_A 95 NKLQALPIGVF--DQLVNLAELRLDRNQLKSLPPRVF------------------------------------------- 129 (270)
T ss_dssp SCCCCCCTTTT--TTCSSCCEEECCSSCCCCCCTTTT-------------------------------------------
T ss_pred CcCCcCCHhHc--ccccCCCEEECCCCccCeeCHHHh-------------------------------------------
Confidence 66655444333 566667777777776665433211
Q ss_pred HhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCC
Q 013403 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS 280 (443)
Q Consensus 201 ~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 280 (443)
..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|+
T Consensus 130 -~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 130 -DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp -TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred -CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 1156677788888887766666678888999999999999877777788899999999999999876677788889999
Q ss_pred eEeCcCCcCcCCCC
Q 013403 281 VLNLSYNQFEGPIP 294 (443)
Q Consensus 281 ~L~Ls~N~l~g~iP 294 (443)
.|++++|++.+..+
T Consensus 209 ~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 209 MLQLQENPWDCTCN 222 (270)
T ss_dssp EEECCSSCBCCSSS
T ss_pred EEEecCCCeeCCCc
Confidence 99999999886654
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.4e-27 Score=227.38 Aligned_cols=219 Identities=21% Similarity=0.176 Sum_probs=160.3
Q ss_pred CCCCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCcccc
Q 013403 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (443)
.+++|++|+|++|.+++..|..+.++ ++|++|+|++|.+++..+ +..+++|++|++++|.+++ ++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l--------~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~---- 96 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPF--------TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL---- 96 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTC--------TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCC--------CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----
Confidence 35678888888888888765333344 344888888888886554 8888899999999998873 22
Q ss_pred CCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhh
Q 013403 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (443)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 164 (443)
..++|++|++++|.+++..+. .+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+..+..
T Consensus 97 ~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~----- 166 (317)
T 3o53_A 97 VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAA----- 166 (317)
T ss_dssp ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGGG-----
T ss_pred CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHhh-----
Confidence 348889999999988875443 36788999999998877666555 77888999999999888765443221
Q ss_pred hccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCC
Q 013403 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244 (443)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 244 (443)
.++.|+.|++++|.+++. +. ...+++|++|++++|++++
T Consensus 167 --------------------------------------~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~- 205 (317)
T 3o53_A 167 --------------------------------------SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF- 205 (317)
T ss_dssp --------------------------------------GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-
T ss_pred --------------------------------------ccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-
Confidence 146677788888877743 32 2347778888888888874
Q ss_pred CCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCc
Q 013403 245 IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 245 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 290 (443)
+|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 206 l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 4445777788888888888877 45666777788888888888777
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=8.3e-25 Score=219.96 Aligned_cols=264 Identities=17% Similarity=0.120 Sum_probs=160.1
Q ss_pred CCCCccEEeccCCCCCCcCCCCCCCCCEEECCCC----------CCCCEEECcCCcccccccccccCCCCCCEEEccCCc
Q 013403 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n----------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~ 74 (443)
++++|++|++++|.+++.....+++|+.|++++| ++|++|++++|++++ +| ++.+++|++|++++|.
T Consensus 62 ~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNT 138 (457)
T ss_dssp GCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSC
T ss_pred ccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCc
Confidence 5788999999999999875577889999999888 789999999999986 44 7888899999999999
Q ss_pred CCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccc
Q 013403 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (443)
Q Consensus 75 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 154 (443)
+++ ++ ++++++|++|++++|...+.+ .+..+++|++|++++|++++. | +..+++|+.|++++|++++..
T Consensus 139 l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~----l~~l~~L~~L~l~~N~l~~~~- 207 (457)
T 3bz5_A 139 LTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D----VSQNKLLNRLNCDTNNITKLD- 207 (457)
T ss_dssp CSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C----CTTCTTCCEEECCSSCCSCCC-
T ss_pred cce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c----cccCCCCCEEECcCCcCCeec-
Confidence 886 33 677888888888888544444 366777788888888877663 2 256677777777777776652
Q ss_pred hhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhc----------cccEEEccCCcCCCCCchh
Q 013403 155 TGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILT----------IFMTIDLSSNKFQGGIPEV 224 (443)
Q Consensus 155 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~L~~L~Ls~N~l~~~~p~~ 224 (443)
+..++.|+.++........+. ......+..+....+.+.......++ .|+.|++++|.+.+.+|
T Consensus 208 ---l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-- 281 (457)
T 3bz5_A 208 ---LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-- 281 (457)
T ss_dssp ---CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--
T ss_pred ---cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--
Confidence 333444444333221111110 00000000111000000000001111 23334444444444343
Q ss_pred cCCCCCCCEEecCCCcCCCCCCc--------cccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcC
Q 013403 225 VGKLNLLKGLNISHNNLTGDIPS--------SLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 291 (443)
Q Consensus 225 l~~l~~L~~L~Ls~N~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 291 (443)
++.+++|+.|++++|...+.+|. .++++++|++|++++|++++. + +..+++|+.|++++|++++
T Consensus 282 ~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 282 AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 24456666666666665444442 234556677777777777763 2 6667777777777777774
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.1e-24 Score=218.94 Aligned_cols=261 Identities=25% Similarity=0.305 Sum_probs=151.4
Q ss_pred CCccEEeccCCCCCCcCCCCCCCCCEEECCCC---------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCC
Q 013403 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG 77 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n---------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 77 (443)
++|++|++++|.+++ +|..+++|+.|++++| ++|++|++++|++++ +| +|+++++|++|++++|.+++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC
T ss_pred CCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc
Confidence 568888888888887 4455688888888888 578899999998885 66 58888899999999998884
Q ss_pred CCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhh
Q 013403 78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY 157 (443)
Q Consensus 78 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 157 (443)
+|..+ .+|++|++++|.+++ +| .++.+++|++|++++|.+++ +|.. .++|+.|++++|.++. ++.
T Consensus 168 -lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-----~~~L~~L~l~~n~l~~-lp~-- 232 (454)
T 1jl5_A 168 -LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-----PLSLESIVAGNNILEE-LPE-- 232 (454)
T ss_dssp -CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-----CTTCCEEECCSSCCSS-CCC--
T ss_pred -cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-----cCcccEEECcCCcCCc-ccc--
Confidence 56543 478888888888887 55 57778888888888887765 2221 1356666666666652 221
Q ss_pred HHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCC--CCchh-----------
Q 013403 158 LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG--GIPEV----------- 224 (443)
Q Consensus 158 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~--~~p~~----------- 224 (443)
+..++.|+.+.........+.... .....+....+.+.. +...+++|+.|++++|++++ ..|..
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLPDLP--PSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 309 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCSCC--TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred cCCCCCCCEEECCCCcCCcccccc--cccCEEECCCCcccc-cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence 334444444333221111111000 001111111111100 00112344444444444443 11110
Q ss_pred --cCCC-CCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcC--CCCCC
Q 013403 225 --VGKL-NLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG--PIPRG 296 (443)
Q Consensus 225 --l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g--~iP~~ 296 (443)
+..+ ++|++|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..
T Consensus 310 ~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 310 RSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp SEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred CcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 1112 366666666666664 4433 466777777777666 3444 35667777777777776 55543
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.3e-26 Score=232.08 Aligned_cols=218 Identities=22% Similarity=0.178 Sum_probs=155.8
Q ss_pred CCCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccC
Q 013403 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN 85 (443)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 85 (443)
+++|++|+|++|.+++..|..+.++. +|++|+|++|.+++..| |..+++|++|+|++|.+++ +| .
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~--------~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~ 97 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFT--------KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----V 97 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCT--------TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----E
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCC--------CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----C
Confidence 34778888888888777665554443 33777888888776555 7778888888888887773 22 2
Q ss_pred CCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhh
Q 013403 86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165 (443)
Q Consensus 86 l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 165 (443)
.++|++|++++|.+++..+. .+++|+.|++++|.+++..|..+ +.+++|+.|++++|.+++..+..+..
T Consensus 98 ~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~------ 166 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAA------ 166 (487)
T ss_dssp CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGG------
T ss_pred CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhh------
Confidence 37788888888888775443 45778888888888877666554 67778888888888877765543211
Q ss_pred ccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCC
Q 013403 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245 (443)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 245 (443)
.++.|+.|+|++|.+++. |. ...+++|+.|+|++|.+++ +
T Consensus 167 -------------------------------------~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~ 206 (487)
T 3oja_A 167 -------------------------------------SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-M 206 (487)
T ss_dssp -------------------------------------GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-E
T ss_pred -------------------------------------hCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-C
Confidence 156778888888888755 32 3357888888888888885 4
Q ss_pred CccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCc
Q 013403 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 246 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 290 (443)
|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus 207 ~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 207 GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 4457788888888888888874 6667777888888888888887
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=6.1e-25 Score=206.27 Aligned_cols=211 Identities=20% Similarity=0.172 Sum_probs=174.4
Q ss_pred CCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCC
Q 013403 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 86 (443)
+++++|++++|.+++..+..+.++. +|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~--------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFP--------ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCT--------TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCccEEECCCCcccccCHhHhcccc--------CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 3588888888888877665555554 45999999999998888899999999999999999998888899999
Q ss_pred CCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCC-CCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhh
Q 013403 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP-IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165 (443)
Q Consensus 87 ~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 165 (443)
++|++|++++|.+++..+..+..+++|++|++++|.+.+. +|..+ ..+++|+.|++++|++++..+.. +..+..+
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L- 175 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCTD-LRVLHQM- 175 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECGGG-GHHHHTC-
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCCCcCCHHH-hhhhhhc-
Confidence 9999999999999997776899999999999999999764 46555 88999999999999998765533 3322222
Q ss_pred ccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhcccc-EEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCC
Q 013403 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFM-TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244 (443)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 244 (443)
+.+. .|++++|.+++..+..+. ..+|++|++++|++++.
T Consensus 176 ---------------------------------------~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 176 ---------------------------------------PLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSV 215 (276)
T ss_dssp ---------------------------------------TTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCC
T ss_pred ---------------------------------------cccceeeecCCCcccccCccccC-CCcccEEECCCCceeec
Confidence 2222 799999999966655554 45899999999999977
Q ss_pred CCccccCCCCCCeeecCCCcCCCCC
Q 013403 245 IPSSLRNLTEVESLDLSSNMLVGHI 269 (443)
Q Consensus 245 ~p~~~~~l~~L~~L~Ls~N~l~~~~ 269 (443)
.+..+..+++|+.|++++|.+.+..
T Consensus 216 ~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 216 PDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CHhHhcccccccEEEccCCcccccC
Confidence 7777899999999999999998654
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.7e-24 Score=217.46 Aligned_cols=259 Identities=22% Similarity=0.286 Sum_probs=130.0
Q ss_pred CccEEeccCCCCCCcCC-CCCCCCCEEECCCC---------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCC
Q 013403 8 TLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG 77 (443)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~-~~~~~L~~L~Ls~n---------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 77 (443)
+|++|++++|.+++++. ..+++|+.|++++| .+|++|++++|.+++ +| .++++++|++|++++|.+++
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 45555555555554221 34455555555555 345555555555553 33 35555555555555555553
Q ss_pred CCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhh
Q 013403 78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY 157 (443)
Q Consensus 78 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 157 (443)
+|... ++|++|++++|.++. +| .++.+++|++|++++|++++ +|. .+++|+.|++++|++++.. ..
T Consensus 210 -l~~~~---~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~l~~N~l~~l~-~~- 275 (454)
T 1jl5_A 210 -LPDLP---LSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT-LPD-----LPPSLEALNVRDNYLTDLP-EL- 275 (454)
T ss_dssp -CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCS-----CCTTCCEEECCSSCCSCCC-CC-
T ss_pred -CCCCc---CcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc-ccc-----cccccCEEECCCCcccccC-cc-
Confidence 33221 355555555555553 44 25556666666666665544 221 1245555555555555421 11
Q ss_pred HHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecC
Q 013403 158 LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237 (443)
Q Consensus 158 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 237 (443)
. +.++.++........+.... .....+....+.+.. +....++|+.|++++|++++ +|.. +++|+.|+++
T Consensus 276 ~---~~L~~L~ls~N~l~~l~~~~--~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~ 345 (454)
T 1jl5_A 276 P---QSLTFLDVSENIFSGLSELP--PNLYYLNASSNEIRS-LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIAS 345 (454)
T ss_dssp C---TTCCEEECCSSCCSEESCCC--TTCCEEECCSSCCSE-ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred c---CcCCEEECcCCccCcccCcC--CcCCEEECcCCcCCc-ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECC
Confidence 1 22222222111111111110 111111111111111 11123589999999999996 5653 5899999999
Q ss_pred CCcCCCCCCccccCCCCCCeeecCCCcCCC--CCcccccCC-------------CCCCeEeCcCCcCcC--CCCCC
Q 013403 238 HNNLTGDIPSSLRNLTEVESLDLSSNMLVG--HIPTQLTSL-------------KYLSVLNLSYNQFEG--PIPRG 296 (443)
Q Consensus 238 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l-------------~~L~~L~Ls~N~l~g--~iP~~ 296 (443)
+|+++ .+|. .+++|++|++++|++++ .+|.++..+ ++|+.||+++|++++ .+|..
T Consensus 346 ~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 346 FNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp SSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------
T ss_pred CCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence 99999 4666 47899999999999998 788888877 889999999999997 77764
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.1e-26 Score=218.23 Aligned_cols=238 Identities=26% Similarity=0.353 Sum_probs=190.9
Q ss_pred CCCCCEEECCCC---------CCCCEEECcCCccc-cccccccc-------CCCCCCEEEccCCcCCCCCCccc--cCCC
Q 013403 27 PTNMTQLNFDSN---------LTHKVLDMRMNNFN-GKIPRKFV-------KSCNLTSLNLNGNRLEGPLPPSL--VNCH 87 (443)
Q Consensus 27 ~~~L~~L~Ls~n---------~~L~~LdLs~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~~--~~l~ 87 (443)
.++|+.|++++| ..|+.|+|++|+++ +.+|..+. ++++|++|++++|.+++.+|..+ ..++
T Consensus 42 ~~~L~~l~l~~n~l~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp EEECTTHHHHCCTTCCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CCCceeEeecccccccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 445777777666 34788999999994 56777665 79999999999999999999886 8999
Q ss_pred CCcEEEcccCCCCCCCchhhhCC-----CCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHh
Q 013403 88 HLEVLNVGNNQINDNFPNWLEIL-----PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK 162 (443)
Q Consensus 88 ~L~~L~Ls~N~l~~~~p~~~~~L-----~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 162 (443)
+|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..+ +.+++|++|++++|++.+..+. . .
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~--~---~ 193 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPALSTLDLSDNPELGERGL--I---S 193 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSSCCEEECCSCTTCHHHHH--H---H
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--ccCCCCCEEECCCCCcCcchHH--H---H
Confidence 999999999999996 8888877 999999999999988877766 8999999999999998754210 0 0
Q ss_pred hhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCC--Cc-hhcCCCCCCCEEecCCC
Q 013403 163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG--IP-EVVGKLNLLKGLNISHN 239 (443)
Q Consensus 163 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~--~p-~~l~~l~~L~~L~Ls~N 239 (443)
.+ .+..+++|++|++++|++++. ++ ..+..+++|++|++++|
T Consensus 194 ~~-----------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 194 AL-----------------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp HS-----------------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred HH-----------------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 00 001267899999999999832 22 34567899999999999
Q ss_pred cCCCCCC-ccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCCCCCCCcCCCccCCCC
Q 013403 240 NLTGDIP-SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNS 311 (443)
Q Consensus 240 ~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~ 311 (443)
++++.+| ..+..+++|++|++++|+++ .+|..+. ++|++||+++|++++. |....+..+....+.+|+
T Consensus 239 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred cCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 9998775 56677899999999999999 7787776 8999999999999955 765455555556666664
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.93 E-value=3.8e-25 Score=211.35 Aligned_cols=206 Identities=21% Similarity=0.207 Sum_probs=156.6
Q ss_pred CCCCEEECcCCcccccccccc--cCCCCCCEEEccCCcCCCCCC----ccccCCCCCcEEEcccCCCCCCCchhhhCCCC
Q 013403 39 LTHKVLDMRMNNFNGKIPRKF--VKSCNLTSLNLNGNRLEGPLP----PSLVNCHHLEVLNVGNNQINDNFPNWLEILPE 112 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~ 112 (443)
++|++|++++|++++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 568888888888888888777 788888888888888886555 34557888888888888888877778888888
Q ss_pred CcEEEeecccCcCC--CCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEE
Q 013403 113 LQVLILRSNRFWGP--IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESII 190 (443)
Q Consensus 113 L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (443)
|++|++++|++.+. ++....+..+++|++|++++|+++......
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~---------------------------------- 216 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC---------------------------------- 216 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH----------------------------------
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH----------------------------------
Confidence 88888888887542 222222357788888888888886321100
Q ss_pred EEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCC---CCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCC
Q 013403 191 LTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL---NLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG 267 (443)
Q Consensus 191 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 267 (443)
......+++|++|+|++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|+|++|++++
T Consensus 217 -------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 217 -------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp -------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred -------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 0011236788999999999998878777766 69999999999998 6677664 799999999999985
Q ss_pred CCcccccCCCCCCeEeCcCCcCc
Q 013403 268 HIPTQLTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 268 ~~p~~~~~l~~L~~L~Ls~N~l~ 290 (443)
. |. +..+++|+.|++++|+++
T Consensus 287 ~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 287 A-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp C-CC-TTSCCCCSCEECSSTTTS
T ss_pred C-ch-hhhCCCccEEECcCCCCC
Confidence 4 33 577889999999999887
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=6.9e-24 Score=198.49 Aligned_cols=205 Identities=22% Similarity=0.214 Sum_probs=176.2
Q ss_pred CccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCC
Q 013403 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (443)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 87 (443)
+.+.++++++.++.++....+ ++++|++++|++++..+..|.++++|++|++++|.++...+..|.+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~-----------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPA-----------DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK 85 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCT-----------TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT
T ss_pred CCCEEEccCCCCCccCCCCCC-----------CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC
Confidence 478999999999976532222 348889999999977778999999999999999999966666789999
Q ss_pred CCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhcc
Q 013403 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHG 167 (443)
Q Consensus 88 ~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~ 167 (443)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+..+
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~---------- 153 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNELQSLPKGVF---------- 153 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTT----------
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCcCCCEEECCCCcCCccCHhHc----------
Confidence 99999999999999777888999999999999999988776655 889999999999999986543221
Q ss_pred CCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCc
Q 013403 168 NNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPS 247 (443)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 247 (443)
..+++|+.|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus 154 ----------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 154 ----------------------------------DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp ----------------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ----------------------------------cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 1267899999999999988888899999999999999999987777
Q ss_pred cccCCCCCCeeecCCCcCCCCC
Q 013403 248 SLRNLTEVESLDLSSNMLVGHI 269 (443)
Q Consensus 248 ~~~~l~~L~~L~Ls~N~l~~~~ 269 (443)
.+..+++|+.|++++|.+...-
T Consensus 200 ~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTTCTTCCEEECCSSCBCCSS
T ss_pred HhccccCCCEEEecCCCeeCCC
Confidence 8999999999999999987543
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.7e-25 Score=226.83 Aligned_cols=218 Identities=21% Similarity=0.163 Sum_probs=182.7
Q ss_pred CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEe
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L 118 (443)
++|++|+|++|.+++..|..|.++++|++|+|++|.+++..| |..+++|++|+|++|.+++. | ..++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEEC
Confidence 467999999999998888999999999999999999996555 89999999999999999873 3 2389999999
Q ss_pred ecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchh
Q 013403 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (443)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (443)
++|.+++..+. .+++|+.|++++|.+++..+..+
T Consensus 107 ~~N~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~----------------------------------------- 140 (487)
T 3oja_A 107 ANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDE----------------------------------------- 140 (487)
T ss_dssp CSSCCCCEEEC-----CCSSCEEEECCSSCCCSGGGBCG-----------------------------------------
T ss_pred cCCcCCCCCcc-----ccCCCCEEECCCCCCCCCCchhh-----------------------------------------
Confidence 99999876553 45889999999999997755331
Q ss_pred hhHhhhccccEEEccCCcCCCCCchhcC-CCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCC
Q 013403 199 KMERILTIFMTIDLSSNKFQGGIPEVVG-KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK 277 (443)
Q Consensus 199 ~~~~~~~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 277 (443)
..+++|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+++..+ ...+++|+.|+|++|.+++..| .+..++
T Consensus 141 ---~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~ 214 (487)
T 3oja_A 141 ---GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAA 214 (487)
T ss_dssp ---GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGT
T ss_pred ---cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCC
Confidence 1267899999999999998888886 79999999999999996633 3468999999999999996555 588999
Q ss_pred CCCeEeCcCCcCcCCCCCC-CCCCCcCCCccCCCCCCCCC
Q 013403 278 YLSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCGF 316 (443)
Q Consensus 278 ~L~~L~Ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg~ 316 (443)
+|+.|++++|++++ +|.. ..+..+...++.+|+..|+.
T Consensus 215 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 99999999999995 6654 34456667778888888653
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.2e-25 Score=213.62 Aligned_cols=217 Identities=21% Similarity=0.169 Sum_probs=178.6
Q ss_pred CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEe
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L 118 (443)
++|++||+++|++++..|..|.++++|++|++++|.+++..+ +..+++|++|++++|.+++. + ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcCEEEC
Confidence 356899999999998888999999999999999999986544 89999999999999999873 3 3489999999
Q ss_pred ecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchh
Q 013403 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (443)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (443)
++|.+++..+. .+++|+.|++++|++++..+..+
T Consensus 107 ~~n~l~~~~~~-----~~~~L~~L~l~~N~l~~~~~~~~----------------------------------------- 140 (317)
T 3o53_A 107 ANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDE----------------------------------------- 140 (317)
T ss_dssp CSSCCSEEEEC-----CCSSCEEEECCSSCCCSGGGBCT-----------------------------------------
T ss_pred CCCccCCcCcc-----ccCCCCEEECCCCCCCCccchhh-----------------------------------------
Confidence 99999776543 46889999999999987644321
Q ss_pred hhHhhhccccEEEccCCcCCCCCchhcC-CCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCC
Q 013403 199 KMERILTIFMTIDLSSNKFQGGIPEVVG-KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK 277 (443)
Q Consensus 199 ~~~~~~~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 277 (443)
..+++|+.|++++|.+++..+..+. .+++|++|++++|.+++. +. ...+++|++|++++|++++. |..+..++
T Consensus 141 ---~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~ 214 (317)
T 3o53_A 141 ---GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAA 214 (317)
T ss_dssp ---GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGT
T ss_pred ---hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccC
Confidence 1267899999999999987777764 789999999999999865 33 33589999999999999954 44588999
Q ss_pred CCCeEeCcCCcCcCCCCCC-CCCCCcCCCccCCCCCCCC
Q 013403 278 YLSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCG 315 (443)
Q Consensus 278 ~L~~L~Ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg 315 (443)
+|+.|++++|+++ .+|.. ..+..+....+.+|+..|+
T Consensus 215 ~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence 9999999999999 56664 3345566667778877654
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.3e-24 Score=201.99 Aligned_cols=201 Identities=21% Similarity=0.219 Sum_probs=165.3
Q ss_pred CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEe
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L 118 (443)
++|+.|++++|.++. + ..+..+++|++|++++|.+++ + ..+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 455788888888763 3 357888999999999999885 3 47888999999999999999877777888999999999
Q ss_pred ecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchh
Q 013403 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (443)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (443)
++|++++..+..+ ..+++|++|++++|++++..+..+
T Consensus 117 ~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~----------------------------------------- 153 (272)
T 3rfs_A 117 VENQLQSLPDGVF--DKLTNLTYLNLAHNQLQSLPKGVF----------------------------------------- 153 (272)
T ss_dssp TTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTT-----------------------------------------
T ss_pred CCCcCCccCHHHh--ccCCCCCEEECCCCccCccCHHHh-----------------------------------------
Confidence 9999887666555 788899999999998886544221
Q ss_pred hhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCC
Q 013403 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (443)
Q Consensus 199 ~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 278 (443)
..+++|+.|++++|++++..+..++.+++|++|++++|++++..+..+..+++|+.|++++|.+.+. +++
T Consensus 154 ---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~ 223 (272)
T 3rfs_A 154 ---DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPG 223 (272)
T ss_dssp ---TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTT
T ss_pred ---ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcH
Confidence 1267788999999999987777788899999999999999988888888999999999999988744 557
Q ss_pred CCeEeCcCCcCcCCCCCC
Q 013403 279 LSVLNLSYNQFEGPIPRG 296 (443)
Q Consensus 279 L~~L~Ls~N~l~g~iP~~ 296 (443)
|+.+++..|+++|.+|..
T Consensus 224 l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 224 IRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp THHHHHHHHHTGGGBBCT
T ss_pred HHHHHHHHHhCCCcccCc
Confidence 888899999999998875
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=4.6e-25 Score=206.76 Aligned_cols=208 Identities=18% Similarity=0.150 Sum_probs=174.0
Q ss_pred CCCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccC
Q 013403 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN 85 (443)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 85 (443)
+++|+.|++++|.++.... +..+ ++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..|.+
T Consensus 40 l~~L~~L~l~~~~i~~~~~--l~~l--------~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 107 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQG--IQYL--------PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDK 107 (272)
T ss_dssp HTTCCEEECTTSCCCCCTT--GGGC--------TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred ccceeeeeeCCCCcccccc--cccC--------CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcC
Confidence 4667777777777765421 1122 566999999999986 3 47899999999999999999877778999
Q ss_pred CCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhh
Q 013403 86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165 (443)
Q Consensus 86 l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 165 (443)
+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|++++..+..+
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-------- 177 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF--DKLTNLTELDLSYNQLQSLPEGVF-------- 177 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTT--------
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh--ccCccCCEEECCCCCcCccCHHHh--------
Confidence 9999999999999999888889999999999999999987766555 789999999999999986654221
Q ss_pred ccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCC
Q 013403 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245 (443)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 245 (443)
..+++|+.|++++|++++..|..+..+++|+.|++++|.+.+.
T Consensus 178 ------------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~- 220 (272)
T 3rfs_A 178 ------------------------------------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT- 220 (272)
T ss_dssp ------------------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-
T ss_pred ------------------------------------cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-
Confidence 1267899999999999998888899999999999999998754
Q ss_pred CccccCCCCCCeeecCCCcCCCCCcccccCCCC
Q 013403 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (443)
Q Consensus 246 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 278 (443)
+++|+.|+++.|.++|.+|.+++.+..
T Consensus 221 ------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 221 ------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 557999999999999999988776543
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=8.1e-24 Score=200.08 Aligned_cols=87 Identities=24% Similarity=0.256 Sum_probs=52.9
Q ss_pred hccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEe
Q 013403 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (443)
Q Consensus 204 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 283 (443)
+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+.++++|+.|++++|+++ .+|..+....+|+.++
T Consensus 123 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~ 201 (290)
T 1p9a_G 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201 (290)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEE
T ss_pred CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEE
Confidence 344555555555555454555556666666666666666544455566666666666666666 4555555666666666
Q ss_pred CcCCcCcC
Q 013403 284 LSYNQFEG 291 (443)
Q Consensus 284 Ls~N~l~g 291 (443)
+++|++.+
T Consensus 202 L~~Np~~C 209 (290)
T 1p9a_G 202 LHGNPWLC 209 (290)
T ss_dssp CCSCCBCC
T ss_pred eCCCCccC
Confidence 66666654
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.6e-23 Score=217.29 Aligned_cols=253 Identities=20% Similarity=0.196 Sum_probs=163.9
Q ss_pred CccEEeccCCCCCCcCCCCCCCCCEEECCCC---------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCC
Q 013403 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP 78 (443)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n---------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 78 (443)
+++.|++++|.++.++....++|+.|++++| ++|++|||++|+++ .+|. .+++|++|++++|.+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~- 115 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH- 115 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-
Confidence 4777888888887555444577888888877 57888888888877 3554 56778888888888773
Q ss_pred CCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhH
Q 013403 79 LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL 158 (443)
Q Consensus 79 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 158 (443)
+|. .+++|+.|++++|.++. +|. .+++|++|++++|.+++. |. .+++|+.|++++|.+++..
T Consensus 116 l~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~-----~~~~L~~L~L~~N~l~~l~----- 177 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA-----LPSELCKLWAYNNQLTSLP----- 177 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECCSSCCSCCC-----
T ss_pred CCC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCc-CC-----ccCCCCEEECCCCCCCCCc-----
Confidence 444 45677777777777776 443 246777777777777543 21 2244555555555555422
Q ss_pred HhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCC
Q 013403 159 DNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238 (443)
Q Consensus 159 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 238 (443)
..++.|+.++........+... ...+..+....+.+. .+...+++|+.|++++|++++ +| ..+++|+.|++++
T Consensus 178 ~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~-~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSG 250 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCS-SCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCS
T ss_pred ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCccc-ccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCC
Confidence 1112222222211111111000 001111111111111 011125789999999999995 55 4668999999999
Q ss_pred CcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCC
Q 013403 239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPR 295 (443)
Q Consensus 239 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~ 295 (443)
|+++ .+|. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 251 N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 251 NRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 9998 4665 6789999999999999 7788899999999999999999987665
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.6e-23 Score=196.64 Aligned_cols=203 Identities=20% Similarity=0.159 Sum_probs=174.3
Q ss_pred CCCCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCcccc
Q 013403 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (443)
++++++.+++++|.++.+++...+ .+++|+|++|.+++..+..|.++++|++|++++|.+++ ++.. +
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~~-----------~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~ 74 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLPK-----------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-G 74 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCCT-----------TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-S
T ss_pred ccCCccEEECCCCCCCcCCCCCCC-----------CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-C
Confidence 578899999999999977653333 34788999999998888999999999999999999995 4433 7
Q ss_pred CCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhh
Q 013403 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (443)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 164 (443)
.+++|++|++++|.++. +|..+..+++|++|++++|++++..+..+ ..+++|++|++++|++++..+..+
T Consensus 75 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~------- 144 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELKTLPPGLL------- 144 (290)
T ss_dssp CCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCCCCCTTTT-------
T ss_pred CCCcCCEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHH--cCCCCCCEEECCCCCCCccChhhc-------
Confidence 89999999999999986 78888999999999999999988776655 889999999999999986644321
Q ss_pred hccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCC
Q 013403 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244 (443)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 244 (443)
..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .
T Consensus 145 -------------------------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 145 -------------------------------------TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp -------------------------------------TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred -------------------------------------ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 12678999999999999777777889999999999999999 6
Q ss_pred CCccccCCCCCCeeecCCCcCCCC
Q 013403 245 IPSSLRNLTEVESLDLSSNMLVGH 268 (443)
Q Consensus 245 ~p~~~~~l~~L~~L~Ls~N~l~~~ 268 (443)
+|..+..+.+|+.|++++|.+...
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cChhhcccccCCeEEeCCCCccCc
Confidence 788888889999999999998753
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.6e-23 Score=193.75 Aligned_cols=121 Identities=23% Similarity=0.222 Sum_probs=79.4
Q ss_pred hccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEe
Q 013403 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (443)
Q Consensus 204 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 283 (443)
+++|+.|+|++|++++..+..+..+++|++|+|++|++++..+..++.+++|++|+|++|++.+..+..+..+++|+.|+
T Consensus 106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 45566666666666655566677788888888888888876666788888888888888888877777788888888888
Q ss_pred CcCCcCcCCCCCCCCCCC------cCCCccCCCCCCCCCCCCCCCCCC
Q 013403 284 LSYNQFEGPIPRGSQFNT------FPNDSYVGNSGLCGFPLLESCNID 325 (443)
Q Consensus 284 Ls~N~l~g~iP~~~~~~~------~~~~~~~gn~~lcg~p~~~~C~~~ 325 (443)
+++|++++.......+.. .......|+ .+|+.|....|..+
T Consensus 186 l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 186 LFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp CCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred eeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 888888865333211111 011112233 36666766777654
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=3.4e-23 Score=190.14 Aligned_cols=196 Identities=17% Similarity=0.192 Sum_probs=140.4
Q ss_pred CCCEEECcCCcccccccccccCCCCCCEEEccCCc-CCCCCCccccCCCCCcEEEccc-CCCCCCCchhhhCCCCCcEEE
Q 013403 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-LEGPLPPSLVNCHHLEVLNVGN-NQINDNFPNWLEILPELQVLI 117 (443)
Q Consensus 40 ~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~L~~L~~L~ 117 (443)
++++|++++|++++..+..|.++++|++|++++|. +++..+.+|.++++|++|++++ |.++...+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45788888888887666788888888888888886 7755566788888888888887 888876667788888888888
Q ss_pred eecccCcCCCCCCCCccCCCCCc---EEEccCC-ccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEe
Q 013403 118 LRSNRFWGPIGENTTIVPFPSLR---IIDLSHN-EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTI 193 (443)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (443)
+++|.+++ +|. + ..+++|+ .|++++| .+++..+..+
T Consensus 112 l~~n~l~~-lp~-~--~~l~~L~~L~~L~l~~N~~l~~i~~~~~------------------------------------ 151 (239)
T 2xwt_C 112 IFNTGLKM-FPD-L--TKVYSTDIFFILEITDNPYMTSIPVNAF------------------------------------ 151 (239)
T ss_dssp EEEECCCS-CCC-C--TTCCBCCSEEEEEEESCTTCCEECTTTT------------------------------------
T ss_pred CCCCCCcc-ccc-c--ccccccccccEEECCCCcchhhcCcccc------------------------------------
Confidence 88888866 443 2 5666666 8888888 7765433221
Q ss_pred ccchhhhHhhhcccc-EEEccCCcCCCCCchhcCCCCCCCEEecCCCc-CCCCCCccccCC-CCCCeeecCCCcCCCCCc
Q 013403 194 KGIDIKMERILTIFM-TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNL-TEVESLDLSSNMLVGHIP 270 (443)
Q Consensus 194 ~~~~~~~~~~~~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p 270 (443)
..+++|+ .|++++|+++ .+|......++|++|++++|+ +++..+..|.++ ++|+.|++++|++++ +|
T Consensus 152 --------~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~ 221 (239)
T 2xwt_C 152 --------QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LP 221 (239)
T ss_dssp --------TTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CC
T ss_pred --------cchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CC
Confidence 1156677 7888888777 444333233678888888884 776556677777 788888888887774 34
Q ss_pred ccccCCCCCCeEeCcCC
Q 013403 271 TQLTSLKYLSVLNLSYN 287 (443)
Q Consensus 271 ~~~~~l~~L~~L~Ls~N 287 (443)
.. .+++|+.|+++++
T Consensus 222 ~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 222 SK--GLEHLKELIARNT 236 (239)
T ss_dssp CT--TCTTCSEEECTTC
T ss_pred hh--HhccCceeeccCc
Confidence 32 5667777777765
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.3e-22 Score=186.04 Aligned_cols=178 Identities=20% Similarity=0.205 Sum_probs=115.0
Q ss_pred CEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecc
Q 013403 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (443)
Q Consensus 42 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N 121 (443)
+++|++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 45555555555 3444333 35566666666666555555666666666666666666655555566666666666666
Q ss_pred cCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhH
Q 013403 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (443)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (443)
.+++..+..+ ..+++|++|++++|++++..+..+
T Consensus 94 ~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~-------------------------------------------- 127 (251)
T 3m19_A 94 QLASLPLGVF--DHLTQLDKLYLGGNQLKSLPSGVF-------------------------------------------- 127 (251)
T ss_dssp CCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTT--------------------------------------------
T ss_pred cccccChhHh--cccCCCCEEEcCCCcCCCcChhHh--------------------------------------------
Confidence 6654444333 556666666666666654432110
Q ss_pred hhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCC
Q 013403 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268 (443)
Q Consensus 202 ~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 268 (443)
..+++|+.|+|++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 128 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 1155677777777777766666788888899999999998877777888888999999999988765
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.9e-24 Score=208.80 Aligned_cols=242 Identities=18% Similarity=0.207 Sum_probs=145.1
Q ss_pred EEeccCCCCCCcCC---CCCCCCCEEECCCC-----------------C-CCCEEECcCCcccccccccccCC-----CC
Q 013403 11 YLDLSNNFLTNIEY---FPPTNMTQLNFDSN-----------------L-THKVLDMRMNNFNGKIPRKFVKS-----CN 64 (443)
Q Consensus 11 ~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n-----------------~-~L~~LdLs~n~l~~~~p~~~~~l-----~~ 64 (443)
++++++|.+++.+| ....+|+.|++++| + +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888888776 33444655555555 2 56666666666665555555543 66
Q ss_pred CCEEEccCCcCCCCCCcccc----CC-CCCcEEEcccCCCCCCCchhhh----C-CCCCcEEEeecccCcCCCCCCC--C
Q 013403 65 LTSLNLNGNRLEGPLPPSLV----NC-HHLEVLNVGNNQINDNFPNWLE----I-LPELQVLILRSNRFWGPIGENT--T 132 (443)
Q Consensus 65 L~~L~L~~n~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~~p~~~~----~-L~~L~~L~L~~N~l~~~~~~~~--~ 132 (443)
|++|+|++|.+++..+..+. .+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++.....+ .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 66666666666654444332 23 5666666666666654444332 2 2466666666666643221111 0
Q ss_pred ccCCC-CCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhh-ccccEE
Q 013403 133 IVPFP-SLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL-TIFMTI 210 (443)
Q Consensus 133 ~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L 210 (443)
+..++ +|++|++++|++++..+..+...+ ... ++|+.|
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l----------------------------------------~~~~~~L~~L 201 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFL----------------------------------------ASIPASVTSL 201 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHH----------------------------------------HTSCTTCCEE
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHH----------------------------------------HhCCCCCCEE
Confidence 12233 666666666666554433221111 112 478888
Q ss_pred EccCCcCCCC----CchhcCC-CCCCCEEecCCCcCCCCCC----ccccCCCCCCeeecCCCcCCCCC-------ccccc
Q 013403 211 DLSSNKFQGG----IPEVVGK-LNLLKGLNISHNNLTGDIP----SSLRNLTEVESLDLSSNMLVGHI-------PTQLT 274 (443)
Q Consensus 211 ~Ls~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~-------p~~~~ 274 (443)
+|++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|++++|.+.+.. +..+.
T Consensus 202 ~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~ 281 (362)
T 3goz_A 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST
T ss_pred ECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc
Confidence 8888888753 3444544 3588888888888876544 34467788888888888855433 33566
Q ss_pred CCCCCCeEeCcCCcCcCC
Q 013403 275 SLKYLSVLNLSYNQFEGP 292 (443)
Q Consensus 275 ~l~~L~~L~Ls~N~l~g~ 292 (443)
.+++|+.||+++|++.+.
T Consensus 282 ~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 282 NIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TCCEEEEECTTSCBCCGG
T ss_pred cCCceEEEecCCCcCCCc
Confidence 778888888888888744
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.1e-22 Score=186.74 Aligned_cols=198 Identities=18% Similarity=0.179 Sum_probs=165.1
Q ss_pred CCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCc-ccccccccccCCCCCCEEEccC-CcCCCCCCcccc
Q 013403 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN-FNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLV 84 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~ 84 (443)
+++++|++++|+++++.+..+.++. +|++|++++|+ +++..+..|.++++|++|++++ |.+++..+..|.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~--------~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLP--------NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCT--------TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred CcccEEEEeCCcceEECHHHccCCC--------CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 4789999999999988776666664 44999999997 8877777999999999999998 999977778899
Q ss_pred CCCCCcEEEcccCCCCCCCchhhhCCCCCc---EEEeecc-cCcCCCCCCCCccCCCCCc-EEEccCCccccccchhhHH
Q 013403 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQ---VLILRSN-RFWGPIGENTTIVPFPSLR-IIDLSHNEFTGVLLTGYLD 159 (443)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~---~L~L~~N-~l~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~ 159 (443)
++++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..+ ..+++|+ .|++++|+++...+.. +
T Consensus 103 ~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~~i~~~~-~- 176 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFTSVQGYA-F- 176 (239)
T ss_dssp CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCCEECTTT-T-
T ss_pred CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCcccCHhh-c-
Confidence 99999999999999998 676 88888888 9999999 8877665545 8899999 9999999988433211 1
Q ss_pred hHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCc-CCCCCchhcCCC-CCCCEEecC
Q 013403 160 NFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK-FQGGIPEVVGKL-NLLKGLNIS 237 (443)
Q Consensus 160 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls 237 (443)
. .++|+.|++++|. +++..+..+..+ ++|+.|+++
T Consensus 177 ------------------------------------------~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 177 ------------------------------------------N-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp ------------------------------------------T-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred ------------------------------------------C-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence 1 2578999999995 997777889999 999999999
Q ss_pred CCcCCCCCCccccCCCCCCeeecCCCc
Q 013403 238 HNNLTGDIPSSLRNLTEVESLDLSSNM 264 (443)
Q Consensus 238 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 264 (443)
+|++++ +|.. .+++|+.|+++++.
T Consensus 214 ~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 214 QTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCcccc-CChh--HhccCceeeccCcc
Confidence 999985 4443 67899999998873
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=6.8e-23 Score=195.68 Aligned_cols=226 Identities=22% Similarity=0.241 Sum_probs=175.1
Q ss_pred CCCCEEECcCCcccccc-cc--cccCCCCCCEEEccCCcCCCCCCccc--cCCCCCcEEEcccCCCCCCCc----hhhhC
Q 013403 39 LTHKVLDMRMNNFNGKI-PR--KFVKSCNLTSLNLNGNRLEGPLPPSL--VNCHHLEVLNVGNNQINDNFP----NWLEI 109 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~-p~--~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~ 109 (443)
..++.++++++.++... .. .+..+++|++|++++|.+++..|..+ .++++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35578888887775321 11 12245679999999999999999988 899999999999999998655 44567
Q ss_pred CCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeE
Q 013403 110 LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESI 189 (443)
Q Consensus 110 L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (443)
+++|++|++++|.+.+..+..+ +.+++|++|++++|++.+..... .-
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~------~~------------------------- 190 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQV--RAFPALTSLDLSDNPGLGERGLM------AA------------------------- 190 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSC--CCCTTCCEEECCSCTTCHHHHHH------TT-------------------------
T ss_pred ccCCCEEEeeCCCcchhhHHHh--ccCCCCCEEECCCCCCccchhhh------HH-------------------------
Confidence 9999999999999988777766 88999999999999986431100 00
Q ss_pred EEEeccchhhhHhhhccccEEEccCCcCCCCCch----hcCCCCCCCEEecCCCcCCCCCCccccCC---CCCCeeecCC
Q 013403 190 ILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE----VVGKLNLLKGLNISHNNLTGDIPSSLRNL---TEVESLDLSS 262 (443)
Q Consensus 190 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~ 262 (443)
.....+++|++|++++|+++ .++. .++.+++|++|+|++|++++..|..+..+ ++|++|++++
T Consensus 191 ---------~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 191 ---------LCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp ---------SCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred ---------HhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 00012678999999999997 3343 35788999999999999998878877776 6999999999
Q ss_pred CcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCCCCCCCcCCCccCCCC
Q 013403 263 NMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNS 311 (443)
Q Consensus 263 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~ 311 (443)
|+++ .+|..+. ++|+.||+++|++++ +|....+..+....+.+|+
T Consensus 261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 261 AGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCC-SCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTT
T ss_pred CCCC-chhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcCCC
Confidence 9999 6777664 899999999999995 3443445556666666665
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=5.4e-25 Score=216.81 Aligned_cols=216 Identities=19% Similarity=0.229 Sum_probs=140.8
Q ss_pred CCCEEECcCC---cccccccccc-------cCCCCCCEEEccCCcCCC----CCCccccCCCCCcEEEcccCCCCCCCch
Q 013403 40 THKVLDMRMN---NFNGKIPRKF-------VKSCNLTSLNLNGNRLEG----PLPPSLVNCHHLEVLNVGNNQINDNFPN 105 (443)
Q Consensus 40 ~L~~LdLs~n---~l~~~~p~~~-------~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 105 (443)
+|++|+|++| .+++.+|..+ ..+++|++|+|++|.+++ .+|..+..+++|++|+|++|.++...+.
T Consensus 61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 140 (386)
T 2ca6_A 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140 (386)
T ss_dssp TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence 3456666653 3334444443 466666667776666664 2555566666666677666666543332
Q ss_pred hhh----CC---------CCCcEEEeecccCcC-CCCCC-CCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCC
Q 013403 106 WLE----IL---------PELQVLILRSNRFWG-PIGEN-TTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNI 170 (443)
Q Consensus 106 ~~~----~L---------~~L~~L~L~~N~l~~-~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~ 170 (443)
.+. .+ ++|++|++++|.++. .++.. ..+..+++|+.|++++|+++........
T Consensus 141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~------------ 208 (386)
T 2ca6_A 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL------------ 208 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHH------------
T ss_pred HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHH------------
Confidence 222 23 666666666666642 22210 0124556666666666666521100000
Q ss_pred cccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCC----CCCchhcCCCCCCCEEecCCCcCCCC--
Q 013403 171 SVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ----GGIPEVVGKLNLLKGLNISHNNLTGD-- 244 (443)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~-- 244 (443)
......+++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++.
T Consensus 209 ---------------------------~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 209 ---------------------------LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp ---------------------------HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred ---------------------------HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 001123678999999999996 56788899999999999999999865
Q ss_pred --CCccc--cCCCCCCeeecCCCcCCC----CCcccc-cCCCCCCeEeCcCCcCcCCCC
Q 013403 245 --IPSSL--RNLTEVESLDLSSNMLVG----HIPTQL-TSLKYLSVLNLSYNQFEGPIP 294 (443)
Q Consensus 245 --~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~g~iP 294 (443)
++..+ +.+++|++|+|++|.+++ .+|..+ ..+++|+.|++++|++++..|
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 45666 448999999999999997 477777 668999999999999996654
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.8e-22 Score=191.19 Aligned_cols=191 Identities=19% Similarity=0.255 Sum_probs=157.0
Q ss_pred CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEe
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L 118 (443)
++|++|++++|.++. +| .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+++ ++ .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 455888888888874 44 68889999999999999984 444 8899999999999999987 44 6888999999999
Q ss_pred ecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchh
Q 013403 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (443)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (443)
++|.+++..+ +..+++|+.|++++|.+++..+ +
T Consensus 115 ~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l---------------------------------------- 147 (308)
T 1h6u_A 115 TSTQITDVTP----LAGLSNLQVLYLDLNQITNISP---L---------------------------------------- 147 (308)
T ss_dssp TTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---G----------------------------------------
T ss_pred CCCCCCCchh----hcCCCCCCEEECCCCccCcCcc---c----------------------------------------
Confidence 9999876432 4788999999999998886532 1
Q ss_pred hhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCC
Q 013403 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (443)
Q Consensus 199 ~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 278 (443)
..+++|+.|++++|++++. +. +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++
T Consensus 148 ---~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 218 (308)
T 1h6u_A 148 ---AGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSN 218 (308)
T ss_dssp ---GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTT
T ss_pred ---cCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCC
Confidence 1267889999999999854 43 8899999999999999986543 7889999999999999985543 788999
Q ss_pred CCeEeCcCCcCcC
Q 013403 279 LSVLNLSYNQFEG 291 (443)
Q Consensus 279 L~~L~Ls~N~l~g 291 (443)
|+.|++++|++++
T Consensus 219 L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 219 LFIVTLTNQTITN 231 (308)
T ss_dssp CCEEEEEEEEEEC
T ss_pred CCEEEccCCeeec
Confidence 9999999999984
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=1.2e-24 Score=219.10 Aligned_cols=270 Identities=16% Similarity=0.109 Sum_probs=196.2
Q ss_pred CccEEeccCCCCCCc----CC---CCCCCCCEEECCCC------------------CCCCEEECcCCccccc----cccc
Q 013403 8 TLYYLDLSNNFLTNI----EY---FPPTNMTQLNFDSN------------------LTHKVLDMRMNNFNGK----IPRK 58 (443)
Q Consensus 8 ~L~~L~Ls~n~l~~~----~~---~~~~~L~~L~Ls~n------------------~~L~~LdLs~n~l~~~----~p~~ 58 (443)
+|++|++++|.++.. ++ ..+++|+.|++++| ++|++|++++|.+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 799999999999853 23 67889999999999 3699999999999874 4666
Q ss_pred ccCCCCCCEEEccCCcCCCCCCcccc-----CCCCCcEEEcccCCCCCC----CchhhhCCCCCcEEEeecccCcCCCCC
Q 013403 59 FVKSCNLTSLNLNGNRLEGPLPPSLV-----NCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILRSNRFWGPIGE 129 (443)
Q Consensus 59 ~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~~~~L~~L~~L~L~~N~l~~~~~~ 129 (443)
+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 77889999999999998855444443 367999999999999875 477888899999999999988553211
Q ss_pred CC---CccCCCCCcEEEccCCccccccchhh---HHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhh
Q 013403 130 NT---TIVPFPSLRIIDLSHNEFTGVLLTGY---LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERI 203 (443)
Q Consensus 130 ~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (443)
.+ ....+++|+.|++++|.++......+ +..++.|+.++.... .+... ....+.......
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n---~i~~~-----------~~~~l~~~l~~~ 311 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN---ELGDE-----------GARLLCETLLEP 311 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC---CCHHH-----------HHHHHHHHHTST
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC---CCchH-----------HHHHHHHHhccC
Confidence 10 01357899999999999986532222 233344444333111 00000 000000011111
Q ss_pred hccccEEEccCCcCCCC----CchhcCCCCCCCEEecCCCcCCCCCCccccC-----CCCCCeeecCCCcCCC----CCc
Q 013403 204 LTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGDIPSSLRN-----LTEVESLDLSSNMLVG----HIP 270 (443)
Q Consensus 204 ~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p 270 (443)
.+.|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|++++ .+|
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 25899999999998865 4666777899999999999987655544432 6799999999999986 678
Q ss_pred ccccCCCCCCeEeCcCCcCcC
Q 013403 271 TQLTSLKYLSVLNLSYNQFEG 291 (443)
Q Consensus 271 ~~~~~l~~L~~L~Ls~N~l~g 291 (443)
..+..+++|++|++++|++++
T Consensus 392 ~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHhCCCccEEECCCCCCCH
Confidence 888889999999999999874
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=5.9e-24 Score=205.09 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=51.5
Q ss_pred hccccEEEccCCc-CCCCCchhcCCCCCCCEEecCCCc-CCCCCCccccCCCCCCeeecCCCcCCCCCcccccCC-CCCC
Q 013403 204 LTIFMTIDLSSNK-FQGGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL-KYLS 280 (443)
Q Consensus 204 ~~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~ 280 (443)
+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+.++++|+.|++++| +... .+..+ ..+.
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~ 296 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALP 296 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHST
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCc
Confidence 5666777777776 555556666667777777777774 22111124566677777777766 3322 22222 2355
Q ss_pred eEeCcCCcCcCCCCCC
Q 013403 281 VLNLSYNQFEGPIPRG 296 (443)
Q Consensus 281 ~L~Ls~N~l~g~iP~~ 296 (443)
.|++++|++++..|..
T Consensus 297 ~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 297 HLQINCSHFTTIARPT 312 (336)
T ss_dssp TSEESCCCSCCTTCSS
T ss_pred ceEEecccCccccCCc
Confidence 5666777777665553
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=1.3e-24 Score=218.87 Aligned_cols=273 Identities=16% Similarity=0.098 Sum_probs=160.3
Q ss_pred CCCCccEEeccCCCCCCcC----C---CCCCCCCEEECCCC--------------C----CCCEEECcCCcccc----cc
Q 013403 5 GIATLYYLDLSNNFLTNIE----Y---FPPTNMTQLNFDSN--------------L----THKVLDMRMNNFNG----KI 55 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~----~---~~~~~L~~L~Ls~n--------------~----~L~~LdLs~n~l~~----~~ 55 (443)
.+++|++|++++|.+++.. + ..+++|+.|++++| + +|++|++++|.++. .+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 3567888888888877431 1 45677888888877 2 58888888888773 45
Q ss_pred cccccCCCCCCEEEccCCcCCCCCCcccc-----CCCCCcEEEcccCCCCCCC----chhhhCCCCCcEEEeecccCcCC
Q 013403 56 PRKFVKSCNLTSLNLNGNRLEGPLPPSLV-----NCHHLEVLNVGNNQINDNF----PNWLEILPELQVLILRSNRFWGP 126 (443)
Q Consensus 56 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~----p~~~~~L~~L~~L~L~~N~l~~~ 126 (443)
+..+.++++|++|++++|.+++..+..+. ..++|++|++++|.+++.. +..+..+++|++|++++|.+++.
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 77777888888888888877644333332 2457888888888777633 45566677888888888876543
Q ss_pred CCCCCC--c-cCCCCCcEEEccCCccccccchhh---HHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhh
Q 013403 127 IGENTT--I-VPFPSLRIIDLSHNEFTGVLLTGY---LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM 200 (443)
Q Consensus 127 ~~~~~~--~-~~l~~L~~L~Ls~n~l~~~~~~~~---~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (443)
.+..+. + ...++|+.|++++|.+++.....+ +..++.|+.++......... ....+....
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~--------------~~~~l~~~~ 251 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV--------------GMAELCPGL 251 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH--------------HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH--------------HHHHHHHHH
Confidence 222110 0 124578888888887775432221 22333343333211100000 000000111
Q ss_pred HhhhccccEEEccCCcCCCC----CchhcCCCCCCCEEecCCCcCCCCCCcccc-----CCCCCCeeecCCCcCCCC---
Q 013403 201 ERILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGDIPSSLR-----NLTEVESLDLSSNMLVGH--- 268 (443)
Q Consensus 201 ~~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~--- 268 (443)
...++.|+.|++++|++++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.
T Consensus 252 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 331 (461)
T 1z7x_W 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH
Confidence 11255677777777776643 455566667777777777776543333222 225677777777776654
Q ss_pred -CcccccCCCCCCeEeCcCCcCcC
Q 013403 269 -IPTQLTSLKYLSVLNLSYNQFEG 291 (443)
Q Consensus 269 -~p~~~~~l~~L~~L~Ls~N~l~g 291 (443)
++..+..+++|+.|++++|++++
T Consensus 332 ~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 332 HFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HHHHHHHHCSSCCEEECCSSBCHH
T ss_pred HHHHHHhhCCCccEEEccCCcccc
Confidence 34555566777777777776653
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.2e-21 Score=186.90 Aligned_cols=193 Identities=20% Similarity=0.296 Sum_probs=160.6
Q ss_pred CCCCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCcccc
Q 013403 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (443)
++++|++|++++|.++... .+..+ ++|++|++++|.+++..+ +.++++|++|++++|.+++ ++ .+.
T Consensus 39 ~l~~L~~L~l~~~~i~~l~--~~~~l--------~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~ 104 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE--GVQYL--------NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIA 104 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGC--------TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGT
T ss_pred HcCCcCEEEeeCCCccCch--hhhcc--------CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhc
Confidence 3677888888888887643 22222 566999999999986444 9999999999999999995 44 689
Q ss_pred CCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhh
Q 013403 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (443)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 164 (443)
.+++|++|++++|.+++ ++. +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +
T Consensus 105 ~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l------ 169 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTP---L------ 169 (308)
T ss_dssp TCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---G------
T ss_pred CCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCCcCCCChh---h------
Confidence 99999999999999998 443 8999999999999999977544 4889999999999999886432 1
Q ss_pred hccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCC
Q 013403 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244 (443)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 244 (443)
..+++|+.|++++|++++..+ +..+++|++|++++|++++.
T Consensus 170 -------------------------------------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 170 -------------------------------------ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp -------------------------------------TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred -------------------------------------cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc
Confidence 126789999999999996544 78999999999999999965
Q ss_pred CCccccCCCCCCeeecCCCcCCC
Q 013403 245 IPSSLRNLTEVESLDLSSNMLVG 267 (443)
Q Consensus 245 ~p~~~~~l~~L~~L~Ls~N~l~~ 267 (443)
.+ +..+++|+.|++++|.+++
T Consensus 211 ~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 211 SP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG--GTTCTTCCEEEEEEEEEEC
T ss_pred cc--ccCCCCCCEEEccCCeeec
Confidence 53 8899999999999999985
No 87
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=2.7e-21 Score=200.49 Aligned_cols=239 Identities=21% Similarity=0.265 Sum_probs=166.4
Q ss_pred CCccEEeccCCCCCCcCCCCCCCCCEEECCCC---------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCC
Q 013403 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG 77 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n---------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 77 (443)
++|++|++++|.++++.+ .+++|+.|++++| ++|++|++++|++++ +|. .+++|++|++++|.++
T Consensus 61 ~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~- 134 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT- 134 (622)
T ss_dssp TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-
T ss_pred CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-
Confidence 678999999999986554 7788999999988 688999999998885 444 5678888999988888
Q ss_pred CCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhh
Q 013403 78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY 157 (443)
Q Consensus 78 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 157 (443)
.+|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++... .
T Consensus 135 ~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~-----~~~~~L~~L~Ls~N~l~~l~~-~- 199 (622)
T 3g06_A 135 SLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP-----MLPSGLQELSVSDNQLASLPT-L- 199 (622)
T ss_dssp CCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC-----CCCTTCCEEECCSSCCSCCCC-C-
T ss_pred cCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc-----ccCCCCcEEECCCCCCCCCCC-c-
Confidence 46653 4788888888888887 443 34677778888877755 33 235677777777777775322 1
Q ss_pred HHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecC
Q 013403 158 LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237 (443)
Q Consensus 158 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 237 (443)
. ..|..+.........+... ...+..+....+.+.. +...+++|+.|++++|+++ .+|. .+++|+.|+|+
T Consensus 200 ~---~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~-lp~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 200 P---SELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY 269 (622)
T ss_dssp C---TTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred c---chhhEEECcCCcccccCCC--CCCCCEEEccCCccCc-CCCCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence 1 2222222211111111110 0112222222222211 1134688999999999999 4555 67899999999
Q ss_pred CCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCC
Q 013403 238 HNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK 277 (443)
Q Consensus 238 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 277 (443)
+|+++ .+|..+.++++|+.|+|++|.+++..|..+..++
T Consensus 270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 99999 7899999999999999999999988888776554
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=5e-23 Score=202.71 Aligned_cols=239 Identities=13% Similarity=0.127 Sum_probs=184.4
Q ss_pred CCCCccEEeccCCCCCCcCC-------CCCCCCCEEECCCC-----------------------CCCCEEECcCCcccc-
Q 013403 5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN-----------------------LTHKVLDMRMNNFNG- 53 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~Ls~n-----------------------~~L~~LdLs~n~l~~- 53 (443)
.+++|++|+|++|.+++..+ ..+++|+.|+|++| ++|++|+|++|.+++
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 46889999999999987633 46889999999875 789999999999997
Q ss_pred ---cccccccCCCCCCEEEccCCcCCCCCCcccc----CC---------CCCcEEEcccCCCC-CCCc---hhhhCCCCC
Q 013403 54 ---KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV----NC---------HHLEVLNVGNNQIN-DNFP---NWLEILPEL 113 (443)
Q Consensus 54 ---~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~Ls~N~l~-~~~p---~~~~~L~~L 113 (443)
.+|..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|.++ ..+| ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 5788899999999999999999754444443 34 89999999999998 3355 467789999
Q ss_pred cEEEeecccCcC-----CCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCccee
Q 013403 114 QVLILRSNRFWG-----PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYES 188 (443)
Q Consensus 114 ~~L~L~~N~l~~-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 188 (443)
++|++++|.++. ..+..+ ..+++|+.|++++|.++......+..
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l--~~~~~L~~L~Ls~n~l~~~g~~~l~~----------------------------- 238 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGL--AYCQELKVLDLQDNTFTHLGSSALAI----------------------------- 238 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTG--GGCTTCCEEECCSSCCHHHHHHHHHH-----------------------------
T ss_pred CEEECcCCCCCHhHHHHHHHHHh--hcCCCccEEECcCCCCCcHHHHHHHH-----------------------------
Confidence 999999999862 223233 78899999999999987321111111
Q ss_pred EEEEeccchhhhHhhhccccEEEccCCcCCCC----Cchhc--CCCCCCCEEecCCCcCCC----CCCccc-cCCCCCCe
Q 013403 189 IILTIKGIDIKMERILTIFMTIDLSSNKFQGG----IPEVV--GKLNLLKGLNISHNNLTG----DIPSSL-RNLTEVES 257 (443)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~p~~l--~~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~ 257 (443)
....+++|+.|+|++|.+++. ++..+ +.+++|++|+|++|.+++ .+|..+ .++++|++
T Consensus 239 -----------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 239 -----------ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp -----------HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred -----------HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 011267899999999999865 56666 448999999999999997 477777 66899999
Q ss_pred eecCCCcCCCCCc--ccc-cCCCCCCeEeCc
Q 013403 258 LDLSSNMLVGHIP--TQL-TSLKYLSVLNLS 285 (443)
Q Consensus 258 L~Ls~N~l~~~~p--~~~-~~l~~L~~L~Ls 285 (443)
|++++|.+++..+ ..+ ..++.++..++.
T Consensus 308 L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 308 LELNGNRFSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp EECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred EEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence 9999999998764 222 234445444443
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=4.5e-21 Score=196.59 Aligned_cols=182 Identities=23% Similarity=0.305 Sum_probs=134.0
Q ss_pred CCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEee
Q 013403 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (443)
Q Consensus 40 ~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~ 119 (443)
+++.|++++|++++ +|..+. ++|++|+|++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56788888888875 666553 67888888888888 566 446788888888888887 665 544 78888888
Q ss_pred cccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhh
Q 013403 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK 199 (443)
Q Consensus 120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (443)
+|.+++ +|. .+++|+.|++++|.+++... .
T Consensus 129 ~N~l~~-lp~-----~l~~L~~L~Ls~N~l~~lp~-~------------------------------------------- 158 (571)
T 3cvr_A 129 NNQLTM-LPE-----LPALLEYINADNNQLTMLPE-L------------------------------------------- 158 (571)
T ss_dssp SSCCSC-CCC-----CCTTCCEEECCSSCCSCCCC-C-------------------------------------------
T ss_pred CCcCCC-CCC-----cCccccEEeCCCCccCcCCC-c-------------------------------------------
Confidence 888876 443 46788888888888775321 0
Q ss_pred hHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCC-------CeeecCCCcCCCCCccc
Q 013403 200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEV-------ESLDLSSNMLVGHIPTQ 272 (443)
Q Consensus 200 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~ 272 (443)
+++|+.|+|++|++++ +|. +. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+++ .+|..
T Consensus 159 ----l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~ 225 (571)
T 3cvr_A 159 ----PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPEN 225 (571)
T ss_dssp ----CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGG
T ss_pred ----CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHH
Confidence 4667888888888885 555 55 78888888888888 5665 554 66 88888888888 57777
Q ss_pred ccCCCCCCeEeCcCCcCcCCCCC
Q 013403 273 LTSLKYLSVLNLSYNQFEGPIPR 295 (443)
Q Consensus 273 ~~~l~~L~~L~Ls~N~l~g~iP~ 295 (443)
+..+++|+.|++++|++++.+|.
T Consensus 226 l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHHHHH
T ss_pred HhcCCCCCEEEeeCCcCCCcCHH
Confidence 77788888888888888876664
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=7.3e-21 Score=170.66 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=50.4
Q ss_pred ccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeC
Q 013403 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL 284 (443)
Q Consensus 205 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 284 (443)
++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .+++|+.|++
T Consensus 100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~ 172 (208)
T 2o6s_A 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSE 172 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHH
T ss_pred cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHH
Confidence 344444445555544444445566666666666666665555556666666666666665543 3445666677
Q ss_pred cCCcCcCCCCCC
Q 013403 285 SYNQFEGPIPRG 296 (443)
Q Consensus 285 s~N~l~g~iP~~ 296 (443)
+.|+++|.+|+.
T Consensus 173 ~~n~~~g~ip~~ 184 (208)
T 2o6s_A 173 WINKHSGVVRNS 184 (208)
T ss_dssp HHHHCTTTBBCT
T ss_pred HHHhCCceeecc
Confidence 777777766654
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.4e-20 Score=168.81 Aligned_cols=181 Identities=17% Similarity=0.149 Sum_probs=114.5
Q ss_pred CEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecc
Q 013403 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (443)
Q Consensus 42 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N 121 (443)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 44555555555 334333 235666666666666544445666666666666666666654555566666666666666
Q ss_pred cCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhH
Q 013403 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (443)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (443)
.+++..+..+ ..+++|++|++++|++++..+..+
T Consensus 87 ~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~-------------------------------------------- 120 (208)
T 2o6s_A 87 QLQSLPNGVF--DKLTQLKELALNTNQLQSLPDGVF-------------------------------------------- 120 (208)
T ss_dssp CCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTT--------------------------------------------
T ss_pred cCCccCHhHh--cCccCCCEEEcCCCcCcccCHhHh--------------------------------------------
Confidence 6655444333 566666666666666664432210
Q ss_pred hhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCC
Q 013403 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (443)
Q Consensus 202 ~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 278 (443)
..+++|+.|++++|++++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|+++|.+|..++.++.
T Consensus 121 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 121 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 114567777777777776666667778888888888887663 3457888888888888888887776554
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=7e-22 Score=190.53 Aligned_cols=203 Identities=17% Similarity=0.177 Sum_probs=161.4
Q ss_pred CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCC-CCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEE
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP-LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~ 117 (443)
+.++.|++++|.+++..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4568888999998876655 56789999999999998855 777888999999999999998887888888999999999
Q ss_pred eecc-cCcCC-CCCCCCccCCCCCcEEEccCC-ccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEec
Q 013403 118 LRSN-RFWGP-IGENTTIVPFPSLRIIDLSHN-EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIK 194 (443)
Q Consensus 118 L~~N-~l~~~-~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (443)
+++| .+++. ++..+ ..+++|++|++++| .+++......
T Consensus 149 L~~~~~l~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~------------------------------------- 189 (336)
T 2ast_B 149 LSGCSGFSEFALQTLL--SSCSRLDELNLSWCFDFTEKHVQVA------------------------------------- 189 (336)
T ss_dssp CTTCBSCCHHHHHHHH--HHCTTCCEEECCCCTTCCHHHHHHH-------------------------------------
T ss_pred CCCCCCCCHHHHHHHH--hcCCCCCEEcCCCCCCcChHHHHHH-------------------------------------
Confidence 9998 56542 33322 67889999999999 7774321111
Q ss_pred cchhhhHhhhc-cccEEEccCC--cCC-CCCchhcCCCCCCCEEecCCCc-CCCCCCccccCCCCCCeeecCCCc-CCCC
Q 013403 195 GIDIKMERILT-IFMTIDLSSN--KFQ-GGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNLTEVESLDLSSNM-LVGH 268 (443)
Q Consensus 195 ~~~~~~~~~~~-~L~~L~Ls~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~ 268 (443)
...++ +|+.|++++| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. +...
T Consensus 190 ------~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 190 ------VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp ------HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred ------HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 12266 8999999999 555 4567778889999999999999 777788889999999999999996 3322
Q ss_pred CcccccCCCCCCeEeCcCC
Q 013403 269 IPTQLTSLKYLSVLNLSYN 287 (443)
Q Consensus 269 ~p~~~~~l~~L~~L~Ls~N 287 (443)
....+..+++|+.|++++|
T Consensus 264 ~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 264 TLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGCTTCCEEECTTS
T ss_pred HHHHHhcCCCCCEEeccCc
Confidence 2235788999999999998
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.2e-20 Score=183.32 Aligned_cols=236 Identities=15% Similarity=0.081 Sum_probs=163.1
Q ss_pred cEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCC-ccccCCCC
Q 013403 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLP-PSLVNCHH 88 (443)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~ 88 (443)
++++-++++++.++..-.+ ++++|+|++|+|+...+.+|.++++|++|+|++|.+.+.+| .+|.++++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~-----------~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPR-----------NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp TEEEEESTTCCSCCTTCCT-----------TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred CEEEecCCCCCccCcCcCC-----------CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 6788889999876532222 34788999999986666789999999999999999876555 46889988
Q ss_pred CcE-EEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccC-CccccccchhhHHhHhhhhc
Q 013403 89 LEV-LNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH-NEFTGVLLTGYLDNFKAMMH 166 (443)
Q Consensus 89 L~~-L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~ 166 (443)
+++ +++++|+++...|.+|..+++|++|++++|++.+..+... ....++..+++.+ +++.......+ .
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~l~~~~f-~------- 150 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHTIERNSF-V------- 150 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCCEECTTSS-T-------
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh--cccchhhhhhhccccccccccccch-h-------
Confidence 876 6677899998778889999999999999999977655443 5566788888865 44553332211 0
Q ss_pred cCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCC-CcCCCCC
Q 013403 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH-NNLTGDI 245 (443)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~ 245 (443)
.....++.|++++|+++. +|.......+|++|++++ |.++...
T Consensus 151 -----------------------------------~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 151 -----------------------------------GLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp -----------------------------------TSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCC
T ss_pred -----------------------------------hcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCC
Confidence 012356778888888874 444444556788888875 5566444
Q ss_pred CccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCCCCCCCCCcCCC
Q 013403 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPND 305 (443)
Q Consensus 246 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~ 305 (443)
++.|.++++|++||+++|+++...+.. +.+|+.|.+.+++--..+|....+..+...
T Consensus 195 ~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l 251 (350)
T 4ay9_X 195 NDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALMEA 251 (350)
T ss_dssp TTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCCEE
T ss_pred HHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChhhC
Confidence 456788888888888888887444333 445555555444333467765444444433
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=6.5e-21 Score=185.06 Aligned_cols=222 Identities=18% Similarity=0.108 Sum_probs=165.4
Q ss_pred CCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCccccccc-ccccCCCCCCE-EEccCCcCCCCCCcccc
Q 013403 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIP-RKFVKSCNLTS-LNLNGNRLEGPLPPSLV 84 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~p~~~~ 84 (443)
+++++|+|++|+|+.+.+..|.+|..| ++|||++|++.+.+| .+|.+++++++ +.+++|+++...|++|.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L--------~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDL--------EKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTC--------CEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCC--------CEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence 578999999999998877777777544 999999999876665 57888888775 66678999977788899
Q ss_pred CCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecc-cCcCCCCCCCCccCC-CCCcEEEccCCccccccchhhHHhHh
Q 013403 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN-RFWGPIGENTTIVPF-PSLRIIDLSHNEFTGVLLTGYLDNFK 162 (443)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N-~l~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~ 162 (443)
++++|++|++++|.++...+..+....++..|++.++ .+....+..+ ..+ ..++.|++++|+++...+..+ .
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--~~~~~~l~~L~L~~N~i~~i~~~~f-~--- 175 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKNGIQEIHNSAF-N--- 175 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSSCCCEECTTSS-T---
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhccccccccccccch--hhcchhhhhhccccccccCCChhhc-c---
Confidence 9999999999999999876667777778889999764 4433333333 444 468899999999886543221 0
Q ss_pred hhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccC-CcCCCCCchhcCCCCCCCEEecCCCcC
Q 013403 163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSS-NKFQGGIPEVVGKLNLLKGLNISHNNL 241 (443)
Q Consensus 163 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l 241 (443)
..+++.+++++ |.++...++.|..+++|+.|++++|+|
T Consensus 176 -----------------------------------------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 176 -----------------------------------------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp -----------------------------------------TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred -----------------------------------------ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence 35678889875 667655556789999999999999999
Q ss_pred CCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCC
Q 013403 242 TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 287 (443)
Q Consensus 242 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 287 (443)
+...+..+ .+|+.|.+.++.-...+|. +..+++|+.++++++
T Consensus 215 ~~lp~~~~---~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 215 HSLPSYGL---ENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCSSSC---TTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred CccChhhh---ccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 85544444 4555555544433346664 788999999999865
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=4e-22 Score=194.56 Aligned_cols=212 Identities=22% Similarity=0.222 Sum_probs=131.5
Q ss_pred CCCEEECcCCccccccc----ccccCCC-CCCEEEccCCcCCCCCCccccCC-----CCCcEEEcccCCCCCCCchhhh-
Q 013403 40 THKVLDMRMNNFNGKIP----RKFVKSC-NLTSLNLNGNRLEGPLPPSLVNC-----HHLEVLNVGNNQINDNFPNWLE- 108 (443)
Q Consensus 40 ~L~~LdLs~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~- 108 (443)
+|++|||++|.+++..+ ..|.+++ +|++|+|++|.+++..+..+..+ ++|++|+|++|.+++..+..+.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 46666666666665444 4555555 56666666666665555555443 6666666666666654444332
Q ss_pred ---CC-CCCcEEEeecccCcCCCCCCC--CccC-CCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCC
Q 013403 109 ---IL-PELQVLILRSNRFWGPIGENT--TIVP-FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN 181 (443)
Q Consensus 109 ---~L-~~L~~L~L~~N~l~~~~~~~~--~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ 181 (443)
.+ ++|++|++++|.+++..+..+ .+.. .++|++|++++|.+++.....+...+.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~------------------- 163 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA------------------- 163 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH-------------------
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh-------------------
Confidence 23 566666666666544332221 0122 246666666666665443322211111
Q ss_pred CCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcC----CC-CCCCEEecCCCcCCCC----CCccccC-
Q 013403 182 SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG----KL-NLLKGLNISHNNLTGD----IPSSLRN- 251 (443)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~----~l-~~L~~L~Ls~N~l~~~----~p~~~~~- 251 (443)
.....|+.|+|++|++++..+..++ .. ++|++|+|++|.+++. ++..+..
T Consensus 164 --------------------~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~ 223 (362)
T 3goz_A 164 --------------------AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223 (362)
T ss_dssp --------------------TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS
T ss_pred --------------------cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC
Confidence 1123799999999999877775444 44 5999999999999853 4445555
Q ss_pred CCCCCeeecCCCcCCCCCc----ccccCCCCCCeEeCcCCcCc
Q 013403 252 LTEVESLDLSSNMLVGHIP----TQLTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 252 l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~ 290 (443)
.++|++|+|++|.+++..+ ..+..+++|+.|++++|+++
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 4599999999999987654 34567889999999999865
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=2.8e-20 Score=190.73 Aligned_cols=190 Identities=24% Similarity=0.294 Sum_probs=155.6
Q ss_pred CCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCC
Q 013403 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 86 (443)
.+++.|++++|.++++++..+ ++|++|+|++|+|+ .+| ..+++|++|++++|.+++ +|. +.+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~-----------~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~- 120 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP-----------PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA- 120 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC-----------TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-
T ss_pred CCccEEEeCCCCCCccCHhHc-----------CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-
Confidence 389999999999998543333 34588899999998 677 457899999999999996 777 665
Q ss_pred CCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhc
Q 013403 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (443)
Q Consensus 87 ~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 166 (443)
+|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|++++|.+++. |. +
T Consensus 121 -~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~L~~l-p~-l--------- 178 (571)
T 3cvr_A 121 -SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE-----LPTSLEVLSVRNNQLTFL-PE-L--------- 178 (571)
T ss_dssp -TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSCC-CC-C---------
T ss_pred -CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC-----cCCCcCEEECCCCCCCCc-ch-h---------
Confidence 99999999999999 666 68999999999999977 443 468999999999999863 21 1
Q ss_pred cCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCC-------CEEecCCC
Q 013403 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL-------KGLNISHN 239 (443)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N 239 (443)
.++|+.|+|++|+++ .+|. +.. +| +.|+|++|
T Consensus 179 -------------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 179 -------------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCREN 217 (571)
T ss_dssp -------------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSS
T ss_pred -------------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCC
Confidence 256899999999999 6666 554 77 99999999
Q ss_pred cCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCC
Q 013403 240 NLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (443)
Q Consensus 240 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 278 (443)
+|+ .+|..+..+++|+.|+|++|.+++.+|..+..+..
T Consensus 218 ~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 218 RIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 999 68888888999999999999999999988776544
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=3.9e-20 Score=167.53 Aligned_cols=91 Identities=27% Similarity=0.251 Sum_probs=75.1
Q ss_pred hccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEe
Q 013403 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (443)
Q Consensus 204 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 283 (443)
+++|+.|+|++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|+
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 45566667777777766677788888888999999998888788888889999999999999888888888899999999
Q ss_pred CcCCcCcCCCC
Q 013403 284 LSYNQFEGPIP 294 (443)
Q Consensus 284 Ls~N~l~g~iP 294 (443)
+++|++++..+
T Consensus 160 L~~N~l~c~c~ 170 (220)
T 2v70_A 160 LLANPFNCNCY 170 (220)
T ss_dssp CCSCCEECSGG
T ss_pred ecCcCCcCCCc
Confidence 99999887655
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=3.1e-19 Score=168.67 Aligned_cols=171 Identities=24% Similarity=0.345 Sum_probs=108.0
Q ss_pred cCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCC
Q 013403 60 VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL 139 (443)
Q Consensus 60 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L 139 (443)
..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +. +..+++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~---l~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-SS---LKDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-GG---GTTCTTC
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-hh---hccCCCC
Confidence 345566666666666652 33 35666666666666666666333 66666666666666666442 21 2566666
Q ss_pred cEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCC
Q 013403 140 RIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG 219 (443)
Q Consensus 140 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 219 (443)
+.|++++|++++.. . + ..+++|+.|++++|++++
T Consensus 115 ~~L~L~~n~i~~~~--~-l-------------------------------------------~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 115 KSLSLEHNGISDIN--G-L-------------------------------------------VHLPQLESLYLGNNKITD 148 (291)
T ss_dssp CEEECTTSCCCCCG--G-G-------------------------------------------GGCTTCCEEECCSSCCCC
T ss_pred CEEECCCCcCCCCh--h-h-------------------------------------------cCCCCCCEEEccCCcCCc
Confidence 66666666665431 0 0 114566777777777764
Q ss_pred CCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCc
Q 013403 220 GIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 220 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 290 (443)
. ..+..+++|+.|++++|++++..+ +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++
T Consensus 149 ~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 149 I--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred c--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 3 456677777777777777775444 6777777777777777764 34 3677777888888887776
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.7e-19 Score=175.81 Aligned_cols=106 Identities=19% Similarity=0.169 Sum_probs=67.4
Q ss_pred CEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCcccc-CCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeec
Q 013403 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV-NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (443)
Q Consensus 42 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~ 120 (443)
+.+++++++++ .+|..+.. .++.|+|++|.+++..+..|. ++++|++|+|++|.|++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~~--~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCCT--TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCCC--CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56677777776 45554432 467777777777755555565 677777777777777765556667777777777777
Q ss_pred ccCcCCCCCCCCccCCCCCcEEEccCCccccc
Q 013403 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (443)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 152 (443)
|++++..+..+ ..+++|+.|++++|++++.
T Consensus 98 N~l~~~~~~~~--~~l~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 98 NHLHTLDEFLF--SDLQALEVLLLYNNHIVVV 127 (361)
T ss_dssp SCCCEECTTTT--TTCTTCCEEECCSSCCCEE
T ss_pred CcCCcCCHHHh--CCCcCCCEEECCCCcccEE
Confidence 77655444333 5556666666666655543
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1.4e-18 Score=157.32 Aligned_cols=148 Identities=20% Similarity=0.190 Sum_probs=129.2
Q ss_pred cEEeccCCCCCCcCCCCCCCCCEEECCCC--------------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcC
Q 013403 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRL 75 (443)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n--------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l 75 (443)
+.+++++|.++.++......++.|++++| ++|++|+|++|.+++..+.+|.++++|++|+|++|.+
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 57888888887765555556778888877 6789999999999988888999999999999999999
Q ss_pred CCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccch
Q 013403 76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155 (443)
Q Consensus 76 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 155 (443)
++..+..|.++++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+ ..+++|+.|++++|.+++..+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGGG
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCch
Confidence 98888889999999999999999999889999999999999999999998878766 8899999999999999987664
Q ss_pred hhHH
Q 013403 156 GYLD 159 (443)
Q Consensus 156 ~~~~ 159 (443)
.++.
T Consensus 172 ~~l~ 175 (220)
T 2v70_A 172 AWLG 175 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=3.9e-19 Score=167.95 Aligned_cols=170 Identities=26% Similarity=0.345 Sum_probs=142.3
Q ss_pred CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEe
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L 118 (443)
++|+.|++++|.++.. + .+..+++|++|++++|.+++. +. +.++++|++|++++|.+++ +| .+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 4558889999998743 4 488899999999999999954 44 8999999999999999988 44 4899999999999
Q ss_pred ecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchh
Q 013403 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (443)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (443)
++|.+++. + .+..+++|+.|++++|++++.. . +
T Consensus 120 ~~n~i~~~-~---~l~~l~~L~~L~l~~n~l~~~~--~-l---------------------------------------- 152 (291)
T 1h6t_A 120 EHNGISDI-N---GLVHLPQLESLYLGNNKITDIT--V-L---------------------------------------- 152 (291)
T ss_dssp TTSCCCCC-G---GGGGCTTCCEEECCSSCCCCCG--G-G----------------------------------------
T ss_pred CCCcCCCC-h---hhcCCCCCCEEEccCCcCCcch--h-h----------------------------------------
Confidence 99998764 2 2478999999999999988641 1 1
Q ss_pred hhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCC
Q 013403 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268 (443)
Q Consensus 199 ~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 268 (443)
..+++|+.|++++|++++..| +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+...
T Consensus 153 ---~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 153 ---SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ---GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred ---ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 126789999999999996555 8999999999999999985 44 489999999999999999854
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=2.9e-19 Score=174.13 Aligned_cols=130 Identities=23% Similarity=0.210 Sum_probs=91.2
Q ss_pred cEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCccccccccccc-CCCCCCEEEccCCcCCCCCCccccCCCC
Q 013403 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (443)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 88 (443)
++++++++.++.++..-.. .++.|+|++|+|++..+..|. ++++|++|+|++|.+++..+.+|.++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~-----------~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS-----------YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT-----------TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEEEeCCCCcCccCccCCC-----------CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCC
Confidence 4667777777665432221 236677777777766666666 7777888888888777666667777778
Q ss_pred CcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccc
Q 013403 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (443)
Q Consensus 89 L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 152 (443)
|++|+|++|.++...+..|..+++|++|++++|.+++..+..+ ..+++|+.|++++|++++.
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCSC
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCCee
Confidence 8888888887777666667777778888888877766655554 6777777777777777654
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=5.6e-19 Score=182.83 Aligned_cols=81 Identities=30% Similarity=0.401 Sum_probs=40.4
Q ss_pred hccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEe
Q 013403 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (443)
Q Consensus 204 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 283 (443)
+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++. | .+..+++|+.|+
T Consensus 130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~ 203 (605)
T 1m9s_A 130 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLE 203 (605)
T ss_dssp CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEE
T ss_pred CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEE
Confidence 34445555555555432 334455555555555555554333 45555555555555555432 2 345555555555
Q ss_pred CcCCcCc
Q 013403 284 LSYNQFE 290 (443)
Q Consensus 284 Ls~N~l~ 290 (443)
|++|+++
T Consensus 204 L~~N~l~ 210 (605)
T 1m9s_A 204 LFSQECL 210 (605)
T ss_dssp CCSEEEE
T ss_pred ccCCcCc
Confidence 5555554
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2.7e-18 Score=156.37 Aligned_cols=156 Identities=24% Similarity=0.290 Sum_probs=89.5
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEc
Q 013403 65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDL 144 (443)
Q Consensus 65 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L 144 (443)
-+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|++++|++.+..+..+ ..+++|+.|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~--~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF--DSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEEC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc--ccCCCcCEEEC
Confidence 455666666666 5555443 667777777777776666666677777777777777654433333 55566666666
Q ss_pred cCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchh
Q 013403 145 SHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV 224 (443)
Q Consensus 145 s~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~ 224 (443)
++|++++. .+..
T Consensus 96 s~N~l~~l--------------------------------------------------------------------~~~~ 107 (229)
T 3e6j_A 96 GTNQLTVL--------------------------------------------------------------------PSAV 107 (229)
T ss_dssp CSSCCCCC--------------------------------------------------------------------CTTT
T ss_pred CCCcCCcc--------------------------------------------------------------------ChhH
Confidence 55555432 2222
Q ss_pred cCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCCC
Q 013403 225 VGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294 (443)
Q Consensus 225 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~iP 294 (443)
+..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++++..+
T Consensus 108 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred hCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 344455555555555555 445555555555555555555554444455556666666666666655443
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=2.1e-19 Score=186.09 Aligned_cols=197 Identities=24% Similarity=0.280 Sum_probs=150.6
Q ss_pred CCccEEeccCCCCCCcCC-CCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccC
Q 013403 7 ATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN 85 (443)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 85 (443)
.++..++++.+.+.+..+ ..+ +.|+.|++++|.+.. ++ .+..+++|++|+|++|.+++..| +..
T Consensus 21 ~~l~~l~l~~~~i~~~~~~~~L-----------~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~ 85 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQNEL-----------NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTN 85 (605)
T ss_dssp HHHHHHHTTCSCTTSEECHHHH-----------TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGG
T ss_pred HHHHHHhccCCCcccccchhcC-----------CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hcc
Confidence 344455666666665543 222 445778888888874 44 58889999999999999985444 889
Q ss_pred CCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhh
Q 013403 86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165 (443)
Q Consensus 86 l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 165 (443)
+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+.+. + .+..+++|+.|+|++|.+++.. . +
T Consensus 86 l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~---~l~~l~~L~~L~Ls~N~l~~l~--~-l------- 149 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI-N---GLVHLPQLESLYLGNNKITDIT--V-L------- 149 (605)
T ss_dssp CTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC-G---GGGGCTTCSEEECCSSCCCCCG--G-G-------
T ss_pred CCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC-c---cccCCCccCEEECCCCccCCch--h-h-------
Confidence 9999999999999987 44 688899999999999998763 2 2478899999999999887641 1 1
Q ss_pred ccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCC
Q 013403 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245 (443)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 245 (443)
..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++.
T Consensus 150 ------------------------------------~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l- 190 (605)
T 1m9s_A 150 ------------------------------------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL- 190 (605)
T ss_dssp ------------------------------------GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred ------------------------------------cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-
Confidence 126788999999999997666 88999999999999999863
Q ss_pred CccccCCCCCCeeecCCCcCCCCCccccc
Q 013403 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLT 274 (443)
Q Consensus 246 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 274 (443)
..+..+++|+.|+|++|.+.+.....+.
T Consensus 191 -~~l~~l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 191 -RALAGLKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp -GGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred -hHHccCCCCCEEEccCCcCcCCcccccc
Confidence 4588899999999999998865433333
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.1e-18 Score=157.87 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=101.2
Q ss_pred CEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEcc
Q 013403 66 TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLS 145 (443)
Q Consensus 66 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls 145 (443)
+.++++++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+ ..+++|++|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT--TTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh--hCCcCCCEEECC
Confidence 56777777777 5665543 567777777777776555566677777777777776665545444 445555555555
Q ss_pred CCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhc
Q 013403 146 HNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV 225 (443)
Q Consensus 146 ~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l 225 (443)
+| +++...+..|
T Consensus 89 ~N--------------------------------------------------------------------~l~~l~~~~f 100 (220)
T 2v9t_B 89 GN--------------------------------------------------------------------KITELPKSLF 100 (220)
T ss_dssp SS--------------------------------------------------------------------CCCCCCTTTT
T ss_pred CC--------------------------------------------------------------------cCCccCHhHc
Confidence 55 4443334445
Q ss_pred CCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCC
Q 013403 226 GKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 292 (443)
Q Consensus 226 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 292 (443)
..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..+++|+.|++++|++.+.
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 6666777777777777766666777777777777777777766666677777777777777777643
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=3.4e-18 Score=155.70 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=130.7
Q ss_pred CCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeec
Q 013403 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (443)
Q Consensus 41 L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~ 120 (443)
.+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 478999999997 6776554 7899999999999988899999999999999999999987777889999999999999
Q ss_pred ccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhh
Q 013403 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM 200 (443)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (443)
|++++..+..+ ..+++|+.|++++|++
T Consensus 98 N~l~~l~~~~~--~~l~~L~~L~Ls~N~l--------------------------------------------------- 124 (229)
T 3e6j_A 98 NQLTVLPSAVF--DRLVHLKELFMCCNKL--------------------------------------------------- 124 (229)
T ss_dssp SCCCCCCTTTT--TTCTTCCEEECCSSCC---------------------------------------------------
T ss_pred CcCCccChhHh--CcchhhCeEeccCCcc---------------------------------------------------
Confidence 99987655544 5556666665555544
Q ss_pred HhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCc
Q 013403 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIP 270 (443)
Q Consensus 201 ~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 270 (443)
+ .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|.+.+..+
T Consensus 125 -----------------~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 125 -----------------T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp -----------------C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred -----------------c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 4 455566788999999999999997777889999999999999999986644
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=7.2e-18 Score=152.55 Aligned_cols=147 Identities=22% Similarity=0.261 Sum_probs=120.2
Q ss_pred cEEeccCCCCCCcCCCCCCCCCEEECCCC-------------CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCC
Q 013403 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (443)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n-------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (443)
+.++.+++.++.++..-..+++.|++++| ++|++|+|++|.+++..|..|.++++|++|+|++|.++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 34555555555544333345555555555 56799999999999888999999999999999999999
Q ss_pred CCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchh
Q 013403 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (443)
Q Consensus 77 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 156 (443)
...+..|.++++|++|+|++|.+++..|..|..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+.....-.
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECSGGGH
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCCCccH
Confidence 6666678999999999999999999889999999999999999999988776655 78999999999999998765443
Q ss_pred hH
Q 013403 157 YL 158 (443)
Q Consensus 157 ~~ 158 (443)
++
T Consensus 172 ~l 173 (220)
T 2v9t_B 172 WL 173 (220)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 109
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=1.1e-19 Score=188.67 Aligned_cols=138 Identities=14% Similarity=0.047 Sum_probs=75.2
Q ss_pred CCCCccEEeccCCCCCCcCC-------CCCCCCCEEECCCC-----------------CCCCEEECcCCccccccccccc
Q 013403 5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKFV 60 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~Ls~n-----------------~~L~~LdLs~n~l~~~~p~~~~ 60 (443)
++++|++|+|++|.+++... ..+++|+.|++++| ++|++|++++|.+.+ +|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 46777777777777655421 35667777777665 567777777777664 556666
Q ss_pred CCCCCCEEEccCCcCC---CCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCC
Q 013403 61 KSCNLTSLNLNGNRLE---GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFP 137 (443)
Q Consensus 61 ~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~ 137 (443)
++++|++|++++.... +..+..+..+++|+.|+++++... .+|..+..+++|++|++++|.+++..... .+..++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~-~~~~~~ 318 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCT-LIQKCP 318 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHH-HHTTCT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHH-HHHhCc
Confidence 6666666666542211 122233444455555555543222 24555555566666666665543221110 013445
Q ss_pred CCcEEEcc
Q 013403 138 SLRIIDLS 145 (443)
Q Consensus 138 ~L~~L~Ls 145 (443)
+|+.|+++
T Consensus 319 ~L~~L~L~ 326 (592)
T 3ogk_B 319 NLEVLETR 326 (592)
T ss_dssp TCCEEEEE
T ss_pred CCCEEecc
Confidence 55555555
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=8e-18 Score=149.48 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=48.8
Q ss_pred ccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCc-CCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEe
Q 013403 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (443)
Q Consensus 205 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 283 (443)
++|++|++++|++++..|..++.+++|++|++++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|+
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLY 187 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEE
Confidence 344555555555554455556666666777777766 44 344 46667777777777777664 33 566677777777
Q ss_pred CcCCcCc
Q 013403 284 LSYNQFE 290 (443)
Q Consensus 284 Ls~N~l~ 290 (443)
+++|++.
T Consensus 188 l~~N~i~ 194 (197)
T 4ezg_A 188 AFSQTIG 194 (197)
T ss_dssp ECBC---
T ss_pred eeCcccC
Confidence 7777765
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=9e-19 Score=162.98 Aligned_cols=78 Identities=26% Similarity=0.287 Sum_probs=42.5
Q ss_pred ccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcC
Q 013403 207 FMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSY 286 (443)
Q Consensus 207 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 286 (443)
|+.|++++|++++ ++ .+..+++|+.|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++
T Consensus 108 L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 108 LSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred ccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence 4444455554443 22 345555566666666665532 2 455556666666666666544 3455566666666666
Q ss_pred CcCc
Q 013403 287 NQFE 290 (443)
Q Consensus 287 N~l~ 290 (443)
|+++
T Consensus 182 N~~~ 185 (263)
T 1xeu_A 182 QKCV 185 (263)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 6665
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=2e-18 Score=160.66 Aligned_cols=167 Identities=21% Similarity=0.267 Sum_probs=133.9
Q ss_pred CEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecc
Q 013403 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (443)
Q Consensus 42 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N 121 (443)
..+++++|.+++ ++ .+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 22 ~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 22 VKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 556777888774 33 5778889999999999988 556 68889999999999999988444 888999999999999
Q ss_pred cCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhH
Q 013403 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (443)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (443)
++++. +.. .. ++|+.|++++|++++.. . +
T Consensus 96 ~l~~l-~~~---~~-~~L~~L~L~~N~l~~~~--~-l------------------------------------------- 124 (263)
T 1xeu_A 96 RLKNL-NGI---PS-ACLSRLFLDNNELRDTD--S-L------------------------------------------- 124 (263)
T ss_dssp CCSCC-TTC---CC-SSCCEEECCSSCCSBSG--G-G-------------------------------------------
T ss_pred ccCCc-Ccc---cc-CcccEEEccCCccCCCh--h-h-------------------------------------------
Confidence 98764 322 22 88999999999888641 1 1
Q ss_pred hhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCC
Q 013403 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI 269 (443)
Q Consensus 202 ~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 269 (443)
..+++|+.|++++|++++. + .++.+++|+.|++++|++++. ..+..+++|+.|++++|.+.+..
T Consensus 125 ~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred cCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 1267889999999999864 4 688899999999999999865 67889999999999999998653
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=1.6e-19 Score=187.43 Aligned_cols=284 Identities=10% Similarity=-0.008 Sum_probs=169.9
Q ss_pred CCCCccEEeccCCCCCCcCC-------CCCCCCCEEECCCC------------CCCCEEECcCCccc---ccccccccCC
Q 013403 5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN------------LTHKVLDMRMNNFN---GKIPRKFVKS 62 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~Ls~n------------~~L~~LdLs~n~l~---~~~p~~~~~l 62 (443)
++++|++|++++|.+++... ..+++|+.|++++| ++|+.|+++..... +..+..+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 57899999999999984332 46789999999998 68999999854322 2344556677
Q ss_pred CCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCc-hhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcE
Q 013403 63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRI 141 (443)
Q Consensus 63 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 141 (443)
++|+.|+++++... .+|..+..+++|++|++++|.+++... ..+..+++|++|+++++-..+.++.. ...+++|++
T Consensus 270 ~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~--~~~~~~L~~ 346 (592)
T 3ogk_B 270 RKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL--AQYCKQLKR 346 (592)
T ss_dssp TTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH--HHHCTTCCE
T ss_pred ccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHH--HHhCCCCCE
Confidence 78888888775433 667777777888888888877654332 33567777777777733211111111 134566777
Q ss_pred EEcc-----------CCccccccchhhHHhHhhhhccCCCccccc--ccCCCCC-CCcceeEEEE----eccch------
Q 013403 142 IDLS-----------HNEFTGVLLTGYLDNFKAMMHGNNISVEVD--YMTPLNS-SNYYESIILT----IKGID------ 197 (443)
Q Consensus 142 L~Ls-----------~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~----~~~~~------ 197 (443)
|+++ .|.+++.........++.|+.+........ .+..... ...+..+... .+.+.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 7777 244544333233333444444332100000 0000000 0011111111 01111
Q ss_pred --hhhHhhhccccEEEccCCc--CCCCCchhcC-CCCCCCEEecCCCcCCC-CCCccccCCCCCCeeecCCCcCCCC-Cc
Q 013403 198 --IKMERILTIFMTIDLSSNK--FQGGIPEVVG-KLNLLKGLNISHNNLTG-DIPSSLRNLTEVESLDLSSNMLVGH-IP 270 (443)
Q Consensus 198 --~~~~~~~~~L~~L~Ls~N~--l~~~~p~~l~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p 270 (443)
......+++|+.|+++.+. +++..+..+. .+++|++|++++|++++ .++..+.++++|++|++++|.+++. ++
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 1123447788888887433 5554444443 47888889998888875 3345557788899999998887654 34
Q ss_pred ccccCCCCCCeEeCcCCcCcC
Q 013403 271 TQLTSLKYLSVLNLSYNQFEG 291 (443)
Q Consensus 271 ~~~~~l~~L~~L~Ls~N~l~g 291 (443)
.....+++|++|++++|++++
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHhcCccCeeECcCCcCCH
Confidence 445678888999999988774
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=1.5e-20 Score=193.51 Aligned_cols=88 Identities=28% Similarity=0.352 Sum_probs=63.1
Q ss_pred hccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCC-cccccCCCCCCeE
Q 013403 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI-PTQLTSLKYLSVL 282 (443)
Q Consensus 204 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L 282 (443)
+++|+.|+|++|+++ .+|..++.+++|+.|+|++|++++ +| .++++++|++|+|++|++++.. |..+..+++|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 556677777777777 666777777777777777777775 45 6777777777777777777665 7777777777777
Q ss_pred eCcCCcCcCCCC
Q 013403 283 NLSYNQFEGPIP 294 (443)
Q Consensus 283 ~Ls~N~l~g~iP 294 (443)
++++|++++..|
T Consensus 539 ~L~~N~l~~~~~ 550 (567)
T 1dce_A 539 NLQGNSLCQEEG 550 (567)
T ss_dssp ECTTSGGGGSSS
T ss_pred EecCCcCCCCcc
Confidence 777777775544
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=3.7e-19 Score=188.53 Aligned_cols=110 Identities=24% Similarity=0.283 Sum_probs=56.3
Q ss_pred CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEe
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L 118 (443)
+.|+.|||++|.+. .+|..++++++|++|+|++|.++ .+|..|+++++|++|+|++|.|+. +|..|+.+++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEEC
Confidence 34455555555554 44444445555555555555555 455555555555555555555552 4555555555555555
Q ss_pred ecccCcCCCCCCCCccCCCCCcEEEccCCccccccc
Q 013403 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (443)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 154 (443)
++|.++ .+|..+ +.+++|+.|+|++|.+++..+
T Consensus 301 ~~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 301 FDNMVT-TLPWEF--GNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CSSCCC-CCCSST--TSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCCC-ccChhh--hcCCCccEEeCCCCccCCCCh
Confidence 555553 333332 455555555555555554443
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=8.6e-18 Score=149.28 Aligned_cols=140 Identities=17% Similarity=0.210 Sum_probs=98.5
Q ss_pred CCCCccEEeccCCCCCCcCC-CCCCCCCEEECCCC-----------CCCCEEECcCCcccccccccccCCCCCCEEEccC
Q 013403 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~Ls~n-----------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~ 72 (443)
.+++|++|++++|.++.... ..+++|+.|++++| ++|++|++++|.+++..+..+.++++|++|++++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 46789999999999986554 56677777777776 6677777777777766667777777777777777
Q ss_pred CcCCCCCCccccCCCCCcEEEcccCC-CCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccc
Q 013403 73 NRLEGPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (443)
Q Consensus 73 n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 150 (443)
|.+++..|..++.+++|++|++++|. ++. +| .+..+++|++|++++|.+++.. .+..+++|+.|++++|++.
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC---
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCcccC
Confidence 77776666667777777777777776 554 44 5667777777777777765532 2366777777777777665
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=6.6e-18 Score=149.43 Aligned_cols=92 Identities=21% Similarity=0.328 Sum_probs=74.1
Q ss_pred hccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEe
Q 013403 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (443)
Q Consensus 204 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 283 (443)
+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 55677777777777777777788888888888888888877777788888888888888888887788888888888888
Q ss_pred CcCCcCcCCCCC
Q 013403 284 LSYNQFEGPIPR 295 (443)
Q Consensus 284 Ls~N~l~g~iP~ 295 (443)
+++|+++|..+.
T Consensus 133 L~~N~l~c~c~l 144 (192)
T 1w8a_A 133 LASNPFNCNCHL 144 (192)
T ss_dssp CTTCCBCCSGGG
T ss_pred eCCCCccCcCcc
Confidence 888888876653
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.1e-16 Score=141.49 Aligned_cols=136 Identities=21% Similarity=0.228 Sum_probs=118.5
Q ss_pred cEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccc-cccCCCCCCEEEccCCcCCCCCCccccCCCC
Q 013403 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPR-KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (443)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 88 (443)
+++++++|.++.++..... ++++|++++|++++..+. .|.++++|++|+|++|.+++..|..|.++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~-----------~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL-----------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT-----------TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CEEEcCCCCcCcCccCCCC-----------CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence 6899999999766532222 348889999999876664 5899999999999999999888999999999
Q ss_pred CcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhH
Q 013403 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL 158 (443)
Q Consensus 89 L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 158 (443)
|++|+|++|.+++..+..|..+++|++|++++|++++..|..+ ..+++|++|++++|.+++..+..++
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~~ 147 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWF 147 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcchHH
Confidence 9999999999999888889999999999999999999888766 8899999999999999988664443
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=1.3e-17 Score=176.71 Aligned_cols=225 Identities=14% Similarity=0.105 Sum_probs=118.7
Q ss_pred CCCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccC
Q 013403 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN 85 (443)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 85 (443)
-+.++.|+|++|.+...... .++.++|++| .+..++++.|.+. ..|..|..+..|++|+|++|.++ .+|..+.+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~---~l~~l~Ls~~-~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~ 245 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQA---LLQHKKLSQY-SIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGG
T ss_pred CCccceEEeeCCCCCcchhh---HhhcCccCcc-cccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcC
Confidence 35688899999999875432 2333444333 2356677777776 67888999999999999999999 78888889
Q ss_pred CCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhh
Q 013403 86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165 (443)
Q Consensus 86 l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 165 (443)
+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..+ +.+++|++|+|++|.++. +|.. ++
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~-lp~~-~~------ 313 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GSCFQLKYFYFFDNMVTT-LPWE-FG------ 313 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GGGTTCSEEECCSSCCCC-CCSS-TT------
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cCCCCCCEEECCCCCCCc-cChh-hh------
Confidence 999999999999999 58999999999999999999998 667766 899999999999999873 3332 11
Q ss_pred ccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCC-CCEEecCCCcCCCC
Q 013403 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL-LKGLNISHNNLTGD 244 (443)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~ 244 (443)
.+++|+.|+|++|.+++.+|..+..+.. +..++|++|.+++.
T Consensus 314 -------------------------------------~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 314 -------------------------------------NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp -------------------------------------SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred -------------------------------------cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence 1678899999999999888887754322 23478899999988
Q ss_pred CCccccCCCCCCeeecCCC--------cCCCCCcccccCCCCCCeEeCcCCcCcC
Q 013403 245 IPSSLRNLTEVESLDLSSN--------MLVGHIPTQLTSLKYLSVLNLSYNQFEG 291 (443)
Q Consensus 245 ~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 291 (443)
+|.. |+.|++++| .+.+..+..+..+..+....+++|-+.+
T Consensus 357 ~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 357 LPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp CCCC-----------------------------------------------CCCG
T ss_pred Cccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 7764 456667766 3444444455666777777888887753
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.8e-19 Score=185.33 Aligned_cols=197 Identities=15% Similarity=0.133 Sum_probs=146.4
Q ss_pred CCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCc-------------CCCCCCccccCCCCCcEEE-cccCCCC
Q 013403 35 FDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-------------LEGPLPPSLVNCHHLEVLN-VGNNQIN 100 (443)
Q Consensus 35 Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-Ls~N~l~ 100 (443)
+..++.|+.|+|++|.++ .+|..++++++|+.|++++|. ..+..|..++++++|+.|+ ++.|.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 455678888889998887 788888888888888887664 5566777788888888888 5655433
Q ss_pred CCCch------hhhC--CCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcc
Q 013403 101 DNFPN------WLEI--LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISV 172 (443)
Q Consensus 101 ~~~p~------~~~~--L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~ 172 (443)
. ++. .+.. ...|+.|++++|.+++ +|. + +.+++|+.|++++|.++ .+|..+
T Consensus 424 ~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~--~~l~~L~~L~Ls~N~l~-~lp~~~--------------- 482 (567)
T 1dce_A 424 D-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-L--EQLLLVTHLDLSHNRLR-ALPPAL--------------- 482 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-G--GGGTTCCEEECCSSCCC-CCCGGG---------------
T ss_pred h-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-c--cccccCcEeecCccccc-ccchhh---------------
Confidence 2 111 1111 1358889999998876 454 3 78889999999999888 334321
Q ss_pred cccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCC-CccccC
Q 013403 173 EVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI-PSSLRN 251 (443)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~ 251 (443)
..+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.. |..+++
T Consensus 483 -----------------------------~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~ 531 (567)
T 1dce_A 483 -----------------------------AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS 531 (567)
T ss_dssp -----------------------------GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred -----------------------------hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence 126778889999999986 66 7888999999999999998776 888889
Q ss_pred CCCCCeeecCCCcCCCCCcc---cccCCCCCCeEeC
Q 013403 252 LTEVESLDLSSNMLVGHIPT---QLTSLKYLSVLNL 284 (443)
Q Consensus 252 l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~L 284 (443)
+++|+.|+|++|.+++..|. .+..+++|+.||+
T Consensus 532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999998866543 2344788888864
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=9.1e-16 Score=135.71 Aligned_cols=136 Identities=20% Similarity=0.169 Sum_probs=117.2
Q ss_pred cEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCC
Q 013403 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89 (443)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 89 (443)
+++++++|.++.++....+ +|++|++++|.++ .+|..|.++++|++|+|++|.+++..+.+|.++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~~-----------~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPR-----------DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCSSCCSCCCT-----------TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEcCCCCCCcCCCCCCC-----------CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 6789999999876543332 4488899999998 778999999999999999999998888889999999
Q ss_pred cEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHH
Q 013403 90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLD 159 (443)
Q Consensus 90 ~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 159 (443)
++|+|++|.+++..|..|..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+.......++.
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~l~~l~ 148 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCNMQWLS 148 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCcCHHHH
Confidence 999999999999888899999999999999999987665545 78999999999999998765544443
No 122
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=1.7e-17 Score=172.22 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=33.1
Q ss_pred CCCCccEEeccCCCCCCcCC-------CCCCCCCEEECCCC----------------CCCCEEECcCC-ccccccccccc
Q 013403 5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN----------------LTHKVLDMRMN-NFNGKIPRKFV 60 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~Ls~n----------------~~L~~LdLs~n-~l~~~~p~~~~ 60 (443)
++++|++|++++|.+++..+ ..+++|+.|++++| ++|++|++++| .+. .+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHh
Confidence 35556666666555444221 24445555555554 45555555555 222 2444444
Q ss_pred CCCCCCEEEcc
Q 013403 61 KSCNLTSLNLN 71 (443)
Q Consensus 61 ~l~~L~~L~L~ 71 (443)
.+++|++|+++
T Consensus 233 ~~~~L~~L~l~ 243 (594)
T 2p1m_B 233 RAPQLEELGTG 243 (594)
T ss_dssp HCTTCSEEECS
T ss_pred cCCcceEcccc
Confidence 55555555543
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=2.4e-15 Score=130.94 Aligned_cols=133 Identities=19% Similarity=0.148 Sum_probs=114.4
Q ss_pred ccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCC
Q 013403 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (443)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 88 (443)
.+.+++++|+++..+....+ +|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~-----------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPS-----------SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCT-----------TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCccCCCCCCC-----------CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc
Confidence 46789999999876543333 4488899999999777778899999999999999999777777899999
Q ss_pred CcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccc
Q 013403 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (443)
Q Consensus 89 L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 154 (443)
|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence 9999999999999777788999999999999999987655444 789999999999999998765
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=6.4e-16 Score=133.39 Aligned_cols=107 Identities=26% Similarity=0.245 Sum_probs=67.0
Q ss_pred CCCEEECcCCccc-ccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEe
Q 013403 40 THKVLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (443)
Q Consensus 40 ~L~~LdLs~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L 118 (443)
+|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 4466677777766 56666666777777777777777643 55666777777777777776666666666677777777
Q ss_pred ecccCcCCCC-CCCCccCCCCCcEEEccCCccc
Q 013403 119 RSNRFWGPIG-ENTTIVPFPSLRIIDLSHNEFT 150 (443)
Q Consensus 119 ~~N~l~~~~~-~~~~~~~l~~L~~L~Ls~n~l~ 150 (443)
++|.+++... .. +..+++|+.|++++|.++
T Consensus 103 s~N~l~~~~~~~~--l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 103 SGNKLKDISTLEP--LKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp BSSSCCSSGGGGG--GSSCSCCCEEECCSSGGG
T ss_pred cCCccCcchhHHH--HhcCCCCCEEEeeCCcCc
Confidence 7766644321 11 244555555555555544
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=3e-16 Score=135.50 Aligned_cols=136 Identities=20% Similarity=0.081 Sum_probs=115.0
Q ss_pred CCCCccEEeccCCCCC-CcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccc
Q 013403 5 GIATLYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~-~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 83 (443)
..++|++|++++|.++ +.+|..+..+. +|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~--------~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFV--------NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGG--------GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCC--------CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 3578999999999998 55565455554 449999999999865 788999999999999999997788888
Q ss_pred cCCCCCcEEEcccCCCCCCCc-hhhhCCCCCcEEEeecccCcCCCC---CCCCccCCCCCcEEEccCCccccc
Q 013403 84 VNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIG---ENTTIVPFPSLRIIDLSHNEFTGV 152 (443)
Q Consensus 84 ~~l~~L~~L~Ls~N~l~~~~p-~~~~~L~~L~~L~L~~N~l~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~ 152 (443)
.++++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+ .. +..+++|+.|++++|.+...
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV--FKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH--HTTCSSCCEETTEETTSCBC
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH--HHhCccCcEecCCCCChhhc
Confidence 889999999999999998422 789999999999999999987654 23 37899999999999987654
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=4.9e-16 Score=149.30 Aligned_cols=208 Identities=12% Similarity=0.102 Sum_probs=135.2
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCc--CCCCCCCCccCCCCC
Q 013403 62 SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW--GPIGENTTIVPFPSL 139 (443)
Q Consensus 62 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L 139 (443)
+.+|+.|+|.+ .++...+.+|.+|++|+.+++++|.+..+.+.+|..+.++..+....+... ...-...++..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888877 777555667888888888888888777766777777666666655442210 000011223455555
Q ss_pred c-EEEccCCccccccchhhHHh---HhhhhccCCCcccccccCCCCCCCcceeEEEEeccch-hhhHhhhccccEEEccC
Q 013403 140 R-IIDLSHNEFTGVLLTGYLDN---FKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID-IKMERILTIFMTIDLSS 214 (443)
Q Consensus 140 ~-~L~Ls~n~l~~~~~~~~~~~---l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~ 214 (443)
+ .+++.... ..+...+.. ...+..+.. .. . +.... ..+...+++|+.+++++
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~---~~-~----------------l~~~~~~~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTI---EG-K----------------LDNADFKLIRDYMPNLVSLDISK 235 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEE---EE-C----------------CCHHHHHHHHHHCTTCCEEECTT
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEE---ee-e----------------ecHHHHHHHHHhcCCCeEEECCC
Confidence 5 44443321 111111111 111111111 00 0 00000 11222378999999999
Q ss_pred CcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCC-eeecCCCcCCCCCcccccCCCCCCeEeCcCCcCcCCC
Q 013403 215 NKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVE-SLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPI 293 (443)
Q Consensus 215 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i 293 (443)
|+++...+.+|..+.+|+.+++++| ++...+.+|.++++|+ .+++.+ .+....+.+|.++++|+.++++.|+++ .|
T Consensus 236 n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I 312 (329)
T 3sb4_A 236 TNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TL 312 (329)
T ss_dssp BCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EE
T ss_pred CCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-cc
Confidence 9999777788999999999999998 7767778899999999 999999 777667789999999999999999998 66
Q ss_pred CCC
Q 013403 294 PRG 296 (443)
Q Consensus 294 P~~ 296 (443)
+..
T Consensus 313 ~~~ 315 (329)
T 3sb4_A 313 GDE 315 (329)
T ss_dssp CTT
T ss_pred chh
Confidence 654
No 127
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=4e-17 Score=169.35 Aligned_cols=285 Identities=16% Similarity=0.135 Sum_probs=152.1
Q ss_pred CCCCccEEeccCCCCCCcCC----CCCCCCCEEECCCC---------------CCCCEEECcCCccccccccccc----C
Q 013403 5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNGKIPRKFV----K 61 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~Ls~n---------------~~L~~LdLs~n~l~~~~p~~~~----~ 61 (443)
.+++|++|+|++|.+++..+ ..+++|+.|++++| ++|++|++++|.+++..+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 46788888888888876544 25788888888876 7889999998887765444443 5
Q ss_pred CCCCCEEEccCCc--CCC-CCCccccCCCCCcEEEcccC-CCCCCCchhhhCCCCCcEEEeeccc---------------
Q 013403 62 SCNLTSLNLNGNR--LEG-PLPPSLVNCHHLEVLNVGNN-QINDNFPNWLEILPELQVLILRSNR--------------- 122 (443)
Q Consensus 62 l~~L~~L~L~~n~--l~~-~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~L~~L~~L~L~~N~--------------- 122 (443)
+++|++|++++|. ++. .++..+.++++|++|++++| .+.+ +|..+..+++|+.|+++.+.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 6688888888886 221 01112345688888888877 2222 44445555555555543321
Q ss_pred -----------CcCCCCCCC--CccCCCCCcEEEccCCccccccchhhHHhH------------------------hhhh
Q 013403 123 -----------FWGPIGENT--TIVPFPSLRIIDLSHNEFTGVLLTGYLDNF------------------------KAMM 165 (443)
Q Consensus 123 -----------l~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l------------------------~~L~ 165 (443)
+.......+ ....+++|+.|++++|.+++.........+ +.|+
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCC
Confidence 000000000 001345566666666654432222222222 2233
Q ss_pred ccCCCcc------cccccCC-----C-CCCCcceeEEEEeccchhh----hHhhhccccEEEcc--C----CcCCCCC--
Q 013403 166 HGNNISV------EVDYMTP-----L-NSSNYYESIILTIKGIDIK----MERILTIFMTIDLS--S----NKFQGGI-- 221 (443)
Q Consensus 166 ~~~~~~~------~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~L~Ls--~----N~l~~~~-- 221 (443)
.++.... ....++. . .....+..+......+... +...+++|+.|+++ + +++++..
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 2221000 0000000 0 0001122222222333221 12235677777777 3 4444221
Q ss_pred ---chhcCCCCCCCEEecCCCcCCCCCCccccC-CCCCCeeecCCCcCCCCCcccc-cCCCCCCeEeCcCCcCcC
Q 013403 222 ---PEVVGKLNLLKGLNISHNNLTGDIPSSLRN-LTEVESLDLSSNMLVGHIPTQL-TSLKYLSVLNLSYNQFEG 291 (443)
Q Consensus 222 ---p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~g 291 (443)
+..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|++++
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 12245567777777766 555444444444 7788888888888765544444 567888888888888753
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=3.7e-16 Score=132.08 Aligned_cols=108 Identities=22% Similarity=0.212 Sum_probs=53.6
Q ss_pred CCEEECcCCccc-ccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEee
Q 013403 41 HKVLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (443)
Q Consensus 41 L~~LdLs~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~ 119 (443)
|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 344555555554 44444455555555555555555533 444555555555555555555445444445555555555
Q ss_pred cccCcCC-CCCCCCccCCCCCcEEEccCCccccc
Q 013403 120 SNRFWGP-IGENTTIVPFPSLRIIDLSHNEFTGV 152 (443)
Q Consensus 120 ~N~l~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~ 152 (443)
+|.+++. .+.. ++.+++|++|++++|.+++.
T Consensus 97 ~N~i~~~~~~~~--~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 97 GNKIKDLSTIEP--LKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp TSCCCSHHHHGG--GGGCTTCCEEECTTCGGGGS
T ss_pred CCcCCChHHHHH--HhhCCCCCEEeCcCCcccch
Confidence 5555432 1121 24455555555555555544
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.6e-15 Score=128.18 Aligned_cols=132 Identities=20% Similarity=0.139 Sum_probs=109.6
Q ss_pred CCCCccEEeccCCCCC-CcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccc
Q 013403 5 GIATLYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~-~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 83 (443)
..++++.|++++|.++ +.+|..+.++. +|++|++++|.+++. ..+.++++|++|++++|.+++.+|..+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~--------~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFE--------ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCT--------TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcC--------CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 4578999999999998 56665555554 449999999999866 788999999999999999997789888
Q ss_pred cCCCCCcEEEcccCCCCCC-CchhhhCCCCCcEEEeecccCcCCCCC-CCCccCCCCCcEEEccC
Q 013403 84 VNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGE-NTTIVPFPSLRIIDLSH 146 (443)
Q Consensus 84 ~~l~~L~~L~Ls~N~l~~~-~p~~~~~L~~L~~L~L~~N~l~~~~~~-~~~~~~l~~L~~L~Ls~ 146 (443)
.++++|++|++++|.+++. .+..+..+++|++|++++|.+++..+. ...+..+++|+.||+++
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8899999999999999983 347899999999999999999776541 01237789999998763
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.2e-14 Score=126.59 Aligned_cols=91 Identities=26% Similarity=0.277 Sum_probs=70.7
Q ss_pred hccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEe
Q 013403 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (443)
Q Consensus 204 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 283 (443)
+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 45566677777777756666677888888888888888876667778888888888888888866666677788888888
Q ss_pred CcCCcCcCCCC
Q 013403 284 LSYNQFEGPIP 294 (443)
Q Consensus 284 Ls~N~l~g~iP 294 (443)
+++|++++.+|
T Consensus 131 l~~N~~~~~~~ 141 (177)
T 2o6r_A 131 LHTNPWDCSCP 141 (177)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCeeccCc
Confidence 88888887665
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.2e-14 Score=128.41 Aligned_cols=107 Identities=25% Similarity=0.359 Sum_probs=96.3
Q ss_pred CEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecc
Q 013403 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (443)
Q Consensus 42 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N 121 (443)
+++++++|.++ .+|..+. .+|++|++++|.++ .+|..|.++++|++|+|++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67999999998 6776554 58999999999999 78899999999999999999999988889999999999999999
Q ss_pred cCcCCCCCCCCccCCCCCcEEEccCCccccccc
Q 013403 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (443)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 154 (443)
.+++..+..+ ..+++|+.|++++|.++...+
T Consensus 89 ~l~~i~~~~f--~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 89 RLRCIPPRTF--DGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp CCCBCCTTTT--TTCTTCCEEECCSSCCCBCCT
T ss_pred ccCEeCHHHh--CCCCCCCEEECCCCCCCeeCh
Confidence 9988877665 899999999999999986544
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=1.6e-14 Score=138.76 Aligned_cols=224 Identities=13% Similarity=0.024 Sum_probs=141.4
Q ss_pred CCCCEEECcCCccc--ccccccccCCCCCCEEEccCCcCCCCCCccccC--------CCCCcEEEcccCCCCCCCchhhh
Q 013403 39 LTHKVLDMRMNNFN--GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN--------CHHLEVLNVGNNQINDNFPNWLE 108 (443)
Q Consensus 39 ~~L~~LdLs~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~ 108 (443)
++|+.|||++|++. ...+.. ++.++.+.+..|.+ .+.+|.+ +++|+.++|.+ .++.+.+.+|.
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred ccCeEEecCcceeEEecCcccc---cccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 56788888888887 222222 22245566666533 3456777 99999999999 88887778899
Q ss_pred CCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccc----cccchhhHHhHhhhhccCCCcccccccCCCCCCC
Q 013403 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT----GVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSN 184 (443)
Q Consensus 109 ~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~ 184 (443)
++++|+.+++++|.+....+..+ ..+.++..+....+... ...... +.++..+... ..+...
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF--~~~~~l~~l~~~~~~~~~~~~~i~~~~-f~~~~~L~~~-------i~~~~~---- 187 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEAL--ADSVTAIFIPLGSSDAYRFKNRWEHFA-FIEGEPLETT-------IQVGAM---- 187 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSS--CTTTCEEEECTTCTHHHHTSTTTTTSC-EEESCCCEEE-------EEECTT----
T ss_pred cCcccceEEcCCCCccccchhhh--cCCCceEEecCcchhhhhccccccccc-ccccccccee-------EEecCC----
Confidence 99999999999998875555444 66667776666553210 000000 1111111100 000000
Q ss_pred cceeEEEEeccchhhhHh---hhccccEEEccCCcCCCCCchhc-CCCCCCCEEecCCCcCCCCCCccccCCCCCCeeec
Q 013403 185 YYESIILTIKGIDIKMER---ILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDL 260 (443)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~---~~~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 260 (443)
..+....+. ...+++.+.+.++-.. .....+ ..+++|+.++|++|+++...+.+|.++++|+.+++
T Consensus 188 ---------~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 188 ---------GKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp ---------CCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred ---------CcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 001111111 1456677776654221 111112 23789999999999999777788999999999999
Q ss_pred CCCcCCCCCcccccCCCCCC-eEeCcCCcCcCCCCCC
Q 013403 261 SSNMLVGHIPTQLTSLKYLS-VLNLSYNQFEGPIPRG 296 (443)
Q Consensus 261 s~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~g~iP~~ 296 (443)
.+| +....+.+|.++++|+ .+++.+ +++ .|++.
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~ 291 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFG 291 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTT
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cce-EEchh
Confidence 998 7766778899999999 999998 666 56654
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=8e-15 Score=127.55 Aligned_cols=134 Identities=19% Similarity=0.118 Sum_probs=107.1
Q ss_pred CCCCccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCcccc
Q 013403 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (443)
++++|+.|++++|.++.. +. +..+. ++|++||+++|.+++. ..|.++++|++|++++|.+++..+..|.
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~-------~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-EN-LGATL-------DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CC-GGGGT-------TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred CcCCceEEEeeCCCCchh-HH-hhhcC-------CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhh
Confidence 678899999999999865 21 11111 2558899999999865 6889999999999999999965555568
Q ss_pred CCCCCcEEEcccCCCCCCCch--hhhCCCCCcEEEeecccCcCCCCCC--CCccCCCCCcEEEccCCcccc
Q 013403 85 NCHHLEVLNVGNNQINDNFPN--WLEILPELQVLILRSNRFWGPIGEN--TTIVPFPSLRIIDLSHNEFTG 151 (443)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~p~--~~~~L~~L~~L~L~~N~l~~~~~~~--~~~~~l~~L~~L~Ls~n~l~~ 151 (443)
++++|++|++++|.++. +|. .+..+++|+.|++++|.++.. |.. ..+..+++|+.||++.|....
T Consensus 86 ~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999999999976 665 788999999999999999643 332 013789999999999997753
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=1.1e-13 Score=119.52 Aligned_cols=109 Identities=19% Similarity=0.157 Sum_probs=86.3
Q ss_pred CCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeec
Q 013403 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (443)
Q Consensus 41 L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~ 120 (443)
.+.+|+++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 367888888887 4665553 6788888888888877788888888888888888888887677778888888888888
Q ss_pred ccCcCCCCCCCCccCCCCCcEEEccCCccccccc
Q 013403 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (443)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 154 (443)
|++++..+..+ ..+++|+.|++++|.++...+
T Consensus 88 N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAF--DNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTT--TTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHh--cCCCCCCEEEeCCCCCCCCch
Confidence 88877665544 778888888888888876653
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=4.3e-14 Score=122.87 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=29.8
Q ss_pred ccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccc
Q 013403 83 LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (443)
Q Consensus 83 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 150 (443)
+.++++|++|++++|.++. +|......++|++|++++|.+++. .. +..+++|+.|++++|.++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~--l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DG--FPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CC--CCCCSSCCEEECCSSCCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cc--cccCCCCCEEECCCCccc
Confidence 3445555555555555554 232222223555555555555442 11 244555555555555554
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.5e-13 Score=118.80 Aligned_cols=108 Identities=22% Similarity=0.186 Sum_probs=94.7
Q ss_pred CccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCC
Q 013403 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (443)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 87 (443)
..+.+++++|.++.++.... ++|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|.+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~-----------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP-----------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC-----------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEEeCCCCcCccCccCC-----------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence 35789999999988654322 3448899999999988899999999999999999999977777789999
Q ss_pred CCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCC
Q 013403 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126 (443)
Q Consensus 88 ~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~ 126 (443)
+|++|+|++|.+++..+..|..+++|++|++++|.+...
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999999999999997777899999999999999998654
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=2.2e-16 Score=140.27 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=49.2
Q ss_pred cCCCCCCEEEccCCcCCCCCCc------cccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCc
Q 013403 60 VKSCNLTSLNLNGNRLEGPLPP------SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI 133 (443)
Q Consensus 60 ~~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~ 133 (443)
.....++.++++++.+++..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++. +|...
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~-- 89 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLD-- 89 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHH--
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchh--
Confidence 3444555555555555555444 56666666666666666665 44 56666666666666666642 33222
Q ss_pred cCCCCCcEEEccCCcccc
Q 013403 134 VPFPSLRIIDLSHNEFTG 151 (443)
Q Consensus 134 ~~l~~L~~L~Ls~n~l~~ 151 (443)
..+++|+.|++++|++++
T Consensus 90 ~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS 107 (198)
T ss_dssp HHHHHCSEEEEEEEECCC
T ss_pred hcCCcCCEEECcCCcCCc
Confidence 334555556665555553
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=2.5e-13 Score=117.77 Aligned_cols=107 Identities=18% Similarity=0.156 Sum_probs=86.5
Q ss_pred CEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecc
Q 013403 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (443)
Q Consensus 42 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N 121 (443)
+.+++++|.++ .+|..+. .+|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888886 6666554 68888999988888777888888889999999999888866666788889999999999
Q ss_pred cCcCCCCCCCCccCCCCCcEEEccCCcccccc
Q 013403 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (443)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 153 (443)
++++..+..+ ..+++|+.|++++|.+....
T Consensus 92 ~l~~l~~~~~--~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAF--DNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTT--TTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHh--ccccCCCEEEeCCCCccccc
Confidence 8876655444 77889999999999888654
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=2.2e-16 Score=140.21 Aligned_cols=102 Identities=24% Similarity=0.334 Sum_probs=62.8
Q ss_pred CEEECcCCcccccccc------cccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcE
Q 013403 42 KVLDMRMNNFNGKIPR------KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV 115 (443)
Q Consensus 42 ~~LdLs~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~ 115 (443)
+.++++.+.++|..|. .|..+++|++|++++|.+++ +| .+.++++|++|++++|.++. +|..+..+++|++
T Consensus 21 ~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEE 97 (198)
T ss_dssp CCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSE
T ss_pred cCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCE
Confidence 4445555555554444 66677777777777777764 55 66677777777777777764 5666666677777
Q ss_pred EEeecccCcCCCCCCCCccCCCCCcEEEccCCccc
Q 013403 116 LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (443)
Q Consensus 116 L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 150 (443)
|++++|.+++. | .+..+++|+.|++++|.++
T Consensus 98 L~L~~N~l~~l-~---~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 98 LWISYNQIASL-S---GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp EEEEEEECCCH-H---HHHHHHHSSEEEESEEECC
T ss_pred EECcCCcCCcC-C---ccccCCCCCEEECCCCcCC
Confidence 77777776542 2 1244555555555555554
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=4.7e-13 Score=116.10 Aligned_cols=107 Identities=19% Similarity=0.162 Sum_probs=92.3
Q ss_pred ccEEeccCCCCCCcCCCCCCCCCEEECCCCCCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCC
Q 013403 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (443)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 88 (443)
-+.+++++|.++.++..-. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~-----------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP-----------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC-----------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CcEEEeCCCCCCccCCCcC-----------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 3689999999976654322 34488899999999888999999999999999999999766667899999
Q ss_pred CcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCC
Q 013403 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126 (443)
Q Consensus 89 L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~ 126 (443)
|++|+|++|.+++..+..|..+++|++|++++|.+...
T Consensus 83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred hhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99999999999997666799999999999999998543
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=8.5e-12 Score=122.72 Aligned_cols=218 Identities=9% Similarity=0.054 Sum_probs=138.4
Q ss_pred CCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEee
Q 013403 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (443)
Q Consensus 40 ~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~ 119 (443)
+|+.+++..+ ++..-..+|.+ .+|+.+.+.+ .++...+.+|.+|++|+.+++++|.++.....+|. ..+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4577777655 55455566666 4688888875 56655566788888888888888888775555555 5778888887
Q ss_pred cccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhh
Q 013403 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK 199 (443)
Q Consensus 120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (443)
++ +...-.. +|.++++|+.+++..| ++.....+ +.+ ..|..+.. ...+..+...
T Consensus 212 ~~-l~~I~~~--aF~~~~~L~~l~l~~~-l~~I~~~a-F~~-~~L~~i~l--------------------p~~i~~I~~~ 265 (401)
T 4fdw_A 212 VT-LKEIGSQ--AFLKTSQLKTIEIPEN-VSTIGQEA-FRE-SGITTVKL--------------------PNGVTNIASR 265 (401)
T ss_dssp TT-CCEECTT--TTTTCTTCCCEECCTT-CCEECTTT-TTT-CCCSEEEE--------------------ETTCCEECTT
T ss_pred Cc-hheehhh--HhhCCCCCCEEecCCC-ccCccccc-ccc-CCccEEEe--------------------CCCccEEChh
Confidence 44 4333223 3477778888888764 33222222 211 11111111 0011222233
Q ss_pred hHhhhccccEEEccCCcCC-----CCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCccccc
Q 013403 200 MERILTIFMTIDLSSNKFQ-----GGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLT 274 (443)
Q Consensus 200 ~~~~~~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 274 (443)
.+..+++|+.+++.+|.+. ...+.+|..+++|+.+++. +.++.....+|.++++|+.+++.+| +...-+.+|.
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~ 343 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN 343 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence 4445778888888877654 2445677888888888888 4576556677888888888888655 5545566788
Q ss_pred CCCCCCeEeCcCCcCc
Q 013403 275 SLKYLSVLNLSYNQFE 290 (443)
Q Consensus 275 ~l~~L~~L~Ls~N~l~ 290 (443)
++ +|+.+++++|.+.
T Consensus 344 ~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 344 NT-GIKEVKVEGTTPP 358 (401)
T ss_dssp SS-CCCEEEECCSSCC
T ss_pred CC-CCCEEEEcCCCCc
Confidence 88 8888888888665
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.39 E-value=9.4e-12 Score=122.42 Aligned_cols=226 Identities=10% Similarity=0.032 Sum_probs=140.4
Q ss_pred CCCCEEECcCCcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEe
Q 013403 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L 118 (443)
.+|+.+++.. .++...+.+|.++.+|+.+++++|.++.....+|. +++|+.+.+.++ ++.+...+|.++++|+.+++
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 4566777764 55545556777777777777777777744444455 467777777643 55555566777777777777
Q ss_pred ecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchh
Q 013403 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (443)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (443)
.+| ++..-... |.+ .+|+.+++.+ .++.... ..+.++..|+.+........ ......+..
T Consensus 234 ~~~-l~~I~~~a--F~~-~~L~~i~lp~-~i~~I~~-~aF~~c~~L~~l~l~~~~~~--------------~~~~~~I~~ 293 (401)
T 4fdw_A 234 PEN-VSTIGQEA--FRE-SGITTVKLPN-GVTNIAS-RAFYYCPELAEVTTYGSTFN--------------DDPEAMIHP 293 (401)
T ss_dssp CTT-CCEECTTT--TTT-CCCSEEEEET-TCCEECT-TTTTTCTTCCEEEEESSCCC--------------CCTTCEECT
T ss_pred CCC-ccCccccc--ccc-CCccEEEeCC-CccEECh-hHhhCCCCCCEEEeCCcccc--------------CCcccEECH
Confidence 654 22222222 233 5666666633 3332222 22444444433322100000 000001223
Q ss_pred hhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCC-
Q 013403 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK- 277 (443)
Q Consensus 199 ~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~- 277 (443)
..+..+++|+.+++. +.++.....+|..+.+|+.+++..| ++.....+|.++ +|+.+++++|.+....+..|..++
T Consensus 294 ~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~ 370 (401)
T 4fdw_A 294 YCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPD 370 (401)
T ss_dssp TTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCT
T ss_pred HHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCC
Confidence 344557889999998 4577566788999999999999655 775667889999 999999999988866677787774
Q ss_pred CCCeEeCcCCcCc
Q 013403 278 YLSVLNLSYNQFE 290 (443)
Q Consensus 278 ~L~~L~Ls~N~l~ 290 (443)
.+..+++..+.+.
T Consensus 371 ~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 371 DITVIRVPAESVE 383 (401)
T ss_dssp TCCEEEECGGGHH
T ss_pred CccEEEeCHHHHH
Confidence 6788888776543
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=5.8e-12 Score=121.57 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=88.5
Q ss_pred CEEECcCC-cccccccccccCCCCCCEEEccC-CcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEee
Q 013403 42 KVLDMRMN-NFNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (443)
Q Consensus 42 ~~LdLs~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~ 119 (443)
..++++++ .++ .+|. +..+.+|++|+|++ |.+++..+..|.++++|++|+|++|.|++..|..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34678877 777 4777 88888888888886 88887777788888888888888888888778888888888888888
Q ss_pred cccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhH
Q 013403 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNF 161 (443)
Q Consensus 120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 161 (443)
+|++++..+..+ ..++ |+.|++.+|.+.......++..+
T Consensus 89 ~N~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~c~l~~~~~~ 127 (347)
T 2ifg_A 89 FNALESLSWKTV--QGLS-LQELVLSGNPLHCSCALRWLQRW 127 (347)
T ss_dssp SSCCSCCCSTTT--CSCC-CCEEECCSSCCCCCGGGHHHHHH
T ss_pred CCccceeCHHHc--ccCC-ceEEEeeCCCccCCCccHHHHHH
Confidence 888876655444 4444 88999999988876554444433
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=4.1e-14 Score=137.98 Aligned_cols=188 Identities=18% Similarity=0.148 Sum_probs=95.7
Q ss_pred CCCCEEEccCCcCCCCCCccccC-----CCCCcEEEcccCCCCCCCchhh-hCCCCCcEEEeecccCcCCCCCCC--Cc-
Q 013403 63 CNLTSLNLNGNRLEGPLPPSLVN-----CHHLEVLNVGNNQINDNFPNWL-EILPELQVLILRSNRFWGPIGENT--TI- 133 (443)
Q Consensus 63 ~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~~p~~~-~~L~~L~~L~L~~N~l~~~~~~~~--~~- 133 (443)
+.|++|+|++|.++......+.. .++|++|+|++|.++......+ ..+++|+.|++++|.++......+ .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 34555556555555322222221 2456666666665543222222 233456666666665533211111 00
Q ss_pred cCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEcc
Q 013403 134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLS 213 (443)
Q Consensus 134 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 213 (443)
...++|+.|++++|.++......+...+ ...+.|++|+|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L----------------------------------------~~~~~L~~L~Ls 191 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGL----------------------------------------AGNTSVTHLSLL 191 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHH----------------------------------------HTCSSCCEEECT
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHH----------------------------------------hcCCCcCEEeCC
Confidence 1345677777777766543221111111 114557777777
Q ss_pred CCcCCCC----CchhcCCCCCCCEEecCCCcCCCC----CCccccCCCCCCeeecCCCcCCCCCcccccCCCC-----CC
Q 013403 214 SNKFQGG----IPEVVGKLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY-----LS 280 (443)
Q Consensus 214 ~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-----L~ 280 (443)
+|.++.. ++..+...++|++|+|++|.+++. ++..+...++|++|||++|.++..-...+..+.. |+
T Consensus 192 ~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~ 271 (372)
T 3un9_A 192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271 (372)
T ss_dssp TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CE
T ss_pred CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccch
Confidence 7776532 244556667888888888888643 2334455678888888888887543333332211 55
Q ss_pred eEe--CcCCcCc
Q 013403 281 VLN--LSYNQFE 290 (443)
Q Consensus 281 ~L~--Ls~N~l~ 290 (443)
.+. +..|.++
T Consensus 272 ~l~~ll~~~~~~ 283 (372)
T 3un9_A 272 VVVSLTEGTAVS 283 (372)
T ss_dssp EECCCC----CH
T ss_pred hhHhhhcCCccC
Confidence 555 5555554
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=7e-14 Score=136.27 Aligned_cols=166 Identities=16% Similarity=0.144 Sum_probs=120.9
Q ss_pred CCCCcEEEcccCCCCCCCchhhhCC-----CCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHh
Q 013403 86 CHHLEVLNVGNNQINDNFPNWLEIL-----PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDN 160 (443)
Q Consensus 86 l~~L~~L~Ls~N~l~~~~p~~~~~L-----~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 160 (443)
++.|+.|+|++|.++......+... ++|++|+|++|.++......+ ...+++|+.|++++|.++......+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-LPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT-HHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH-HHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4689999999999987544444332 689999999998854322221 1345689999999999875433222111
Q ss_pred HhhhhccCCCcccccccCCCCCCCcceeEEEEeccchhhhHhhhccccEEEccCCcCCCC----CchhcCCCCCCCEEec
Q 013403 161 FKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNI 236 (443)
Q Consensus 161 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L 236 (443)
+. ...+.|+.|+|++|.++.. ++..+...++|++|+|
T Consensus 150 L~---------------------------------------~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~L 190 (372)
T 3un9_A 150 LL---------------------------------------HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190 (372)
T ss_dssp HH---------------------------------------STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEEC
T ss_pred HH---------------------------------------hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeC
Confidence 10 1146799999999998742 3445577899999999
Q ss_pred CCCcCCCC----CCccccCCCCCCeeecCCCcCCCC----CcccccCCCCCCeEeCcCCcCcC
Q 013403 237 SHNNLTGD----IPSSLRNLTEVESLDLSSNMLVGH----IPTQLTSLKYLSVLNLSYNQFEG 291 (443)
Q Consensus 237 s~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g 291 (443)
++|.+++. ++..+...++|++|+|++|.++.. +...+...++|++|||++|+++.
T Consensus 191 s~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 99999743 355667788999999999999753 34455667999999999999873
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=1.7e-11 Score=118.32 Aligned_cols=105 Identities=17% Similarity=0.100 Sum_probs=90.8
Q ss_pred cEEeccCC-CCCCcCCCCCCCCCEEECCCCCCCCEEECcC-CcccccccccccCCCCCCEEEccCCcCCCCCCccccCCC
Q 013403 10 YYLDLSNN-FLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (443)
Q Consensus 10 ~~L~Ls~n-~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 87 (443)
..++.+++ .++++++ +..+. +|+.|+|++ |.|++..+..|.++.+|++|+|++|.|++..|..|.+++
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~--------~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAE--------NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCS--------CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred CEEEcCCCCCCCccCC--CCCCC--------CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence 45789988 8987543 66665 449999996 999988889999999999999999999998899999999
Q ss_pred CCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcC
Q 013403 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125 (443)
Q Consensus 88 ~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~ 125 (443)
+|++|+|++|.|++..+..+..++ |+.|++.+|.+..
T Consensus 81 ~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 81 RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999999999999996666676666 9999999999854
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.99 E-value=4e-09 Score=103.52 Aligned_cols=82 Identities=11% Similarity=0.017 Sum_probs=46.9
Q ss_pred hhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCe
Q 013403 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV 281 (443)
Q Consensus 202 ~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 281 (443)
..+.+|+.+.+..+ ++.....+|..+.+|+.+++..+ ++..-..+|.++.+|+.+++..+ +...-..+|.++.+|+.
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 33556666666543 44334455666666666666533 44344456666666776666655 44344456666666666
Q ss_pred EeCcC
Q 013403 282 LNLSY 286 (443)
Q Consensus 282 L~Ls~ 286 (443)
+++..
T Consensus 371 i~lp~ 375 (394)
T 4fs7_A 371 VELPK 375 (394)
T ss_dssp EEEEG
T ss_pred EEECC
Confidence 66644
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=1.1e-10 Score=112.83 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=31.3
Q ss_pred CCCCCEEecCCCcCCCCCCccc---cCCCCCCeeecCCCcCCCC----CcccccCCCCCCeEeCcCCcCc
Q 013403 228 LNLLKGLNISHNNLTGDIPSSL---RNLTEVESLDLSSNMLVGH----IPTQLTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 228 l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 290 (443)
+++|+.|+|++|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4556666666555543222111 2345566666666655542 2222234455666666666554
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=2.5e-09 Score=103.32 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=34.3
Q ss_pred ccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhh--CCCCCcEEEee
Q 013403 55 IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE--ILPELQVLILR 119 (443)
Q Consensus 55 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~L~~L~~L~L~ 119 (443)
++..+..+++|+.|+|++|.-. .++. +. +++|++|++..+.++......+. .+|+|+.|+|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3344456667777777666211 2222 32 66777777776666543333333 56777777664
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.66 E-value=9.9e-08 Score=93.49 Aligned_cols=268 Identities=12% Similarity=0.092 Sum_probs=152.0
Q ss_pred CCCCccEEeccCCCCCCcCC---CCCCCCCEEECCCC------------CCCCEEECcCC--------------------
Q 013403 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMN-------------------- 49 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n------------~~L~~LdLs~n-------------------- 49 (443)
+|++|+.+.+..+ ++.+.. ..+.+|+.+++..+ ..|+.+.+..+
T Consensus 69 ~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECC
T ss_pred CCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCceeeecceeeecccccccccC
Confidence 5778888888643 555444 45567777777654 34444333221
Q ss_pred -cccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCc----
Q 013403 50 -NFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW---- 124 (443)
Q Consensus 50 -~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~---- 124 (443)
.+......+|.++.+|+.+.+.++..+ ....+|.++.+|+.+++..+ ++.....+|..+..|+.+.+.++...
T Consensus 148 ~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~ 225 (394)
T 4fs7_A 148 EGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDF 225 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTT
T ss_pred ccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehh
Confidence 111122356778888999988765433 55567888888888888765 43333445555555555544433110
Q ss_pred --------C-CCCC------CCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeE
Q 013403 125 --------G-PIGE------NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESI 189 (443)
Q Consensus 125 --------~-~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (443)
. .+|. ..++..+..++.+.+..+... . ....+..+..+............. .......+...
T Consensus 226 ~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i-~~~~F~~~~~l~~~~~~~~~i~~~-~F~~~~~L~~i 302 (394)
T 4fs7_A 226 ALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-I-GGSLFYNCSGLKKVIYGSVIVPEK-TFYGCSSLTEV 302 (394)
T ss_dssp TTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-E-CSCTTTTCTTCCEEEECSSEECTT-TTTTCTTCCEE
T ss_pred hcccCCCceEEECCCceecccccccccccceeEEcCCCcce-e-eccccccccccceeccCceeeccc-ccccccccccc
Confidence 0 0010 113466778888888766432 1 111233333322211100000000 00000011111
Q ss_pred EE--EeccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCC
Q 013403 190 IL--TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG 267 (443)
Q Consensus 190 ~~--~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 267 (443)
.. .++.+....+..+.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++..-..+|.++++|+.+++..+ +.
T Consensus 303 ~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~- 378 (394)
T 4fs7_A 303 KLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE- 378 (394)
T ss_dssp EECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-
T ss_pred ccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-
Confidence 11 123344455666889999999754 66555778999999999999877 76566778999999999999765 22
Q ss_pred CCcccccCCCCCCeE
Q 013403 268 HIPTQLTSLKYLSVL 282 (443)
Q Consensus 268 ~~p~~~~~l~~L~~L 282 (443)
.+...|.++++|+.+
T Consensus 379 ~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 379 QYRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGGBCTTCEEEEE
T ss_pred EhhheecCCCCCcEE
Confidence 335678888888764
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=8.7e-09 Score=89.89 Aligned_cols=116 Identities=15% Similarity=0.145 Sum_probs=85.0
Q ss_pred CCCCCCCEEECcCC-ccccc----ccccccCCCCCCEEEccCCcCCCC----CCccccCCCCCcEEEcccCCCCCC----
Q 013403 36 DSNLTHKVLDMRMN-NFNGK----IPRKFVKSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDN---- 102 (443)
Q Consensus 36 s~n~~L~~LdLs~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~---- 102 (443)
..++.|++|+|++| .+... +...+...++|++|+|++|.++.. +...+...++|++|+|++|.|+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34577899999998 88742 455666788999999999998743 344556678999999999999864
Q ss_pred CchhhhCCCCCcEEEe--ecccCcCCCCCCC--CccCCCCCcEEEccCCcccc
Q 013403 103 FPNWLEILPELQVLIL--RSNRFWGPIGENT--TIVPFPSLRIIDLSHNEFTG 151 (443)
Q Consensus 103 ~p~~~~~L~~L~~L~L--~~N~l~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~ 151 (443)
+...+...+.|++|++ ++|.+...-...+ .+...++|++|++++|.+..
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3455667788999999 7888754311111 22456889999999998863
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=1.4e-08 Score=93.46 Aligned_cols=65 Identities=26% Similarity=0.388 Sum_probs=33.8
Q ss_pred CCCCCCEEEccCCcCCC--CCCccccCCCCCcEEEcccCCCCCCCchhhhCCC--CCcEEEeecccCcCCC
Q 013403 61 KSCNLTSLNLNGNRLEG--PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILP--ELQVLILRSNRFWGPI 127 (443)
Q Consensus 61 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~--~L~~L~L~~N~l~~~~ 127 (443)
++++|++|+|++|.+++ .+|..+..+++|+.|+|++|.|++. ..+..+. +|++|+|++|.+.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 45556666666666654 2334445556666666666666553 2222222 5555555555554433
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=8.5e-08 Score=83.55 Aligned_cols=116 Identities=18% Similarity=0.134 Sum_probs=82.5
Q ss_pred CCCCccEEeccCC-CCCCcCCCCCCCCCEEECCCCCCCCEEECcCCccccc----ccccccCCCCCCEEEccCCcCCCC-
Q 013403 5 GIATLYYLDLSNN-FLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK----IPRKFVKSCNLTSLNLNGNRLEGP- 78 (443)
Q Consensus 5 ~~~~L~~L~Ls~n-~l~~~~~~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~- 78 (443)
..++|++|+|++| .++......+.. -+..|++|++|||++|.+... +...+...+.|++|+|++|.++..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~----~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAE----ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHH----HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHH----HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 4677888888888 776532100000 022335678999999998743 345556678899999999999843
Q ss_pred ---CCccccCCCCCcEEEc--ccCCCCCCC----chhhhCCCCCcEEEeecccCc
Q 013403 79 ---LPPSLVNCHHLEVLNV--GNNQINDNF----PNWLEILPELQVLILRSNRFW 124 (443)
Q Consensus 79 ---~p~~~~~l~~L~~L~L--s~N~l~~~~----p~~~~~L~~L~~L~L~~N~l~ 124 (443)
+..++...++|++|+| ++|.++... ...+...+.|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4566778889999999 889998643 344556689999999999873
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.45 E-value=9.9e-06 Score=79.14 Aligned_cols=270 Identities=11% Similarity=0.105 Sum_probs=135.7
Q ss_pred CccEEeccCCCCCCcCC---CCCCCCCEEECCCC----------------CCCCEEECcCCcccccccccccCCCCCCEE
Q 013403 8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN----------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (443)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~---~~~~~L~~L~Ls~n----------------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L 68 (443)
.|+.+.+..+ ++.+.. ..+.+|+.+.++.| ..|+.+.+..+ ++.....+|.++.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 3666666543 444443 44556666655433 34444444332 333444567778888888
Q ss_pred EccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcCCCCCCCCccCCCCCcEEEccCCc
Q 013403 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (443)
Q Consensus 69 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~ 148 (443)
.+..+ ++.....+|.++.+|+.+.+.++ ++.+...+|.. ..|+.+.+..+-. ..-. .++..+.++.......+.
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~--~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGT--NAFSECFALSTITSDSES 216 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECT--TTTTTCTTCCEEEECCSS
T ss_pred cccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-cccc--chhhhccccceecccccc
Confidence 88754 33355567888888888888755 44333444543 5677777765432 1111 122455555555544332
Q ss_pred cccccchhh------------HHhHhhhhccCCCcccccccCCC--CCCCcceeEEE--EeccchhhhHhhhccccEEEc
Q 013403 149 FTGVLLTGY------------LDNFKAMMHGNNISVEVDYMTPL--NSSNYYESIIL--TIKGIDIKMERILTIFMTIDL 212 (443)
Q Consensus 149 l~~~~~~~~------------~~~l~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~L 212 (443)
........+ ......+..... ......+... ..-..+..+.. ....+....+..+..|+.+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-p~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l 295 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKI-PNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEF 295 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC-CTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cccccceeecccccccccccccccccccceEEc-CCcceEcccceeeecccccEEecccccceecCcccccccccccccC
Confidence 211100000 000000000000 0000000000 00000011100 011122233344667777777
Q ss_pred cCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEeCcCCcC
Q 013403 213 SSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289 (443)
Q Consensus 213 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 289 (443)
. +.++.....+|..+.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ +...-..+|.++++|+.+++.++..
T Consensus 296 ~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 296 S-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp C-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred C-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 5 3444344566777888888888654 55444567778888888888654 5544456778888888888877643
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=4e-07 Score=83.63 Aligned_cols=78 Identities=28% Similarity=0.294 Sum_probs=64.0
Q ss_pred CCCCEEECcCCcccc--cccccccCCCCCCEEEccCCcCCCCCCccccCCC--CCcEEEcccCCCCCCCc-------hhh
Q 013403 39 LTHKVLDMRMNNFNG--KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH--HLEVLNVGNNQINDNFP-------NWL 107 (443)
Q Consensus 39 ~~L~~LdLs~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p-------~~~ 107 (443)
++|+.|+|++|.|++ .+|..+..+++|++|+|++|.+++. ..+..++ +|++|+|++|.+.+.+| ..+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 688999999999997 5567788999999999999999964 3344444 99999999999987655 246
Q ss_pred hCCCCCcEEEe
Q 013403 108 EILPELQVLIL 118 (443)
Q Consensus 108 ~~L~~L~~L~L 118 (443)
..+++|+.||-
T Consensus 248 ~~~P~L~~LDg 258 (267)
T 3rw6_A 248 ERFPKLLRLDG 258 (267)
T ss_dssp HHCTTCCEESS
T ss_pred HHCcccCeECC
Confidence 78899998863
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.30 E-value=1.1e-05 Score=78.84 Aligned_cols=255 Identities=12% Similarity=0.089 Sum_probs=146.0
Q ss_pred CCCCccEEeccCCC---CCCcCC---CCCCCCCEEECC------------CCCCCCEEECcCCcccccccccccCCCCCC
Q 013403 5 GIATLYYLDLSNNF---LTNIEY---FPPTNMTQLNFD------------SNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~---l~~~~~---~~~~~L~~L~Ls------------~n~~L~~LdLs~n~l~~~~p~~~~~l~~L~ 66 (443)
+|++|+.+.++.|. ++.+.. ..+.+|+.+.+. ++.+|+.+.+..+ +......+|.++..|+
T Consensus 85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~ 163 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLH 163 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhhhhhhhcccccccccce-eeeecccceecccccc
Confidence 78999999998764 544433 334555555443 3378888888654 3334556777888888
Q ss_pred EEEccCCcCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeecccCcC---------------------
Q 013403 67 SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG--------------------- 125 (443)
Q Consensus 67 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~--------------------- 125 (443)
.+.+.++ ++.....+|.+ .+|+.+.+..+-. .....+|..+..++......+....
T Consensus 164 ~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T 4gt6_A 164 TVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPS 240 (394)
T ss_dssp EEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCT
T ss_pred cccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccceecccccccccccceeeccccccccccccccc
Confidence 8888755 44233445543 5677777654422 2233445555555544433221100
Q ss_pred -------CCCC------CCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEE
Q 013403 126 -------PIGE------NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILT 192 (443)
Q Consensus 126 -------~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (443)
.+|. ..+|..+..|+.+.+..+..+ +....+.++..|....... .
T Consensus 241 ~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~~--------------------~ 298 (394)
T 4gt6_A 241 QREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFSS--------------------R 298 (394)
T ss_dssp TCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECCT--------------------T
T ss_pred ccccceEEcCCcceEcccceeeecccccEEecccccce--ecCcccccccccccccCCC--------------------c
Confidence 0111 123467788888888665332 2222244444443322200 0
Q ss_pred eccchhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCccc
Q 013403 193 IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ 272 (443)
Q Consensus 193 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 272 (443)
+..+....+..+.+|+.+++..+ ++.....+|..+.+|+.+.+..+ ++..-..+|.++++|+.+++.++.... ..
T Consensus 299 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~ 373 (394)
T 4gt6_A 299 ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NA 373 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HT
T ss_pred ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hh
Confidence 11223334555788999999764 55455678999999999999754 665556789999999999999886431 35
Q ss_pred ccCCCCCCeEeCcCCcCc
Q 013403 273 LTSLKYLSVLNLSYNQFE 290 (443)
Q Consensus 273 ~~~l~~L~~L~Ls~N~l~ 290 (443)
+..+.+|+.+.+..|.+.
T Consensus 374 ~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 374 ISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CBCCCCC-----------
T ss_pred hhccCCCCEEEeCCCCEE
Confidence 677888988888776543
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.22 E-value=6e-05 Score=73.00 Aligned_cols=81 Identities=12% Similarity=0.096 Sum_probs=51.4
Q ss_pred hccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCCCCCCeEe
Q 013403 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (443)
Q Consensus 204 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 283 (443)
+..|+.+.+..+ ++.....+|..+.+|+.+.+.++.++.....+|.++.+|+.+++..+ +...-..+|.++.+|+.+.
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 555666666433 33334456677777777777777776555567777777777777654 4433445677777777776
Q ss_pred CcC
Q 013403 284 LSY 286 (443)
Q Consensus 284 Ls~ 286 (443)
+..
T Consensus 340 ip~ 342 (379)
T 4h09_A 340 YPK 342 (379)
T ss_dssp CCT
T ss_pred ECC
Confidence 643
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=2.7e-06 Score=72.64 Aligned_cols=84 Identities=12% Similarity=0.053 Sum_probs=53.5
Q ss_pred CCCCEEEccCCcCCCCCCccccCCCCCcEEEcccCC-CCCCCchhhhCC----CCCcEEEeeccc-CcCCCCCCCCccCC
Q 013403 63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEIL----PELQVLILRSNR-FWGPIGENTTIVPF 136 (443)
Q Consensus 63 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~L----~~L~~L~L~~N~-l~~~~~~~~~~~~l 136 (443)
.+|+.||++++.++..--..+.++++|++|+|++|. +++..-..+..+ ++|++|++++|. ++..--. .+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~--~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII--ALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH--HGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH--HHhcC
Confidence 367777777777765544556777888888888774 655333445544 368888888764 4332111 23567
Q ss_pred CCCcEEEccCCc
Q 013403 137 PSLRIIDLSHNE 148 (443)
Q Consensus 137 ~~L~~L~Ls~n~ 148 (443)
++|+.|+++++.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 888888888774
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.83 E-value=0.00083 Score=64.86 Aligned_cols=242 Identities=10% Similarity=0.022 Sum_probs=137.9
Q ss_pred CCCCccEEeccCCCCCCcCCCCC--CCCCEEECCCC-----------CCCCEEECcCCcccccccccccCCCCCCEEEcc
Q 013403 5 GIATLYYLDLSNNFLTNIEYFPP--TNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71 (443)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~--~~L~~L~Ls~n-----------~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~ 71 (443)
+|++|+.++|..+ ++.+....| .+|+.+.+..+ .+|+.+++..+ ++.....+|.+ .+|+...+.
T Consensus 67 ~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~l~~I~~~aF~~~~L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~ 143 (379)
T 4h09_A 67 SCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMERVKKFGDYVFQGTDLDDFEFPGA-TTEIGNYIFYN-SSVKRIVIP 143 (379)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTTCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEEEC
T ss_pred CCCCCCEEEeCCc-ceEechhhhcCCCCceEECCceeeEeccceeccCCcccccCCCc-ccccccccccc-ceeeeeecc
Confidence 7889999999754 655544222 24555555433 56777777654 22122233333 345555554
Q ss_pred CCcCCCCCCccccCCCCCcEEEcccCCC-----------------------------------CCCCchhhhCCCCCcEE
Q 013403 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQI-----------------------------------NDNFPNWLEILPELQVL 116 (443)
Q Consensus 72 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l-----------------------------------~~~~p~~~~~L~~L~~L 116 (443)
.+ ++.....+|.++.+++...+..+.. .......+.....|+.+
T Consensus 144 ~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i 222 (379)
T 4h09_A 144 KS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKI 222 (379)
T ss_dssp TT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEE
T ss_pred ce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeeccccccccccee
Confidence 33 2323344555566666555443211 11123345566778888
Q ss_pred EeecccCcCCCCCCCCccCCCCCcEEEccCCccccccchhhHHhHhhhhccCCCcccccccCCCCCCCcceeEEEEeccc
Q 013403 117 ILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGI 196 (443)
Q Consensus 117 ~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (443)
.+..+- ...... ++..+..|+.+.+..+ ++... ...+.++..+..+.. ...+..+
T Consensus 223 ~~~~~~-~~i~~~--~f~~~~~L~~i~lp~~-v~~I~-~~aF~~~~~l~~i~l--------------------~~~i~~i 277 (379)
T 4h09_A 223 TITSGV-TTLGDG--AFYGMKALDEIAIPKN-VTSIG-SFLLQNCTALKTLNF--------------------YAKVKTV 277 (379)
T ss_dssp ECCTTC-CEECTT--TTTTCSSCCEEEECTT-CCEEC-TTTTTTCTTCCEEEE--------------------CCCCSEE
T ss_pred eeccce-eEEccc--cccCCccceEEEcCCC-ccEeC-ccccceeehhccccc--------------------cccceec
Confidence 776542 121122 3367788888888665 33222 122333333322211 0011222
Q ss_pred hhhhHhhhccccEEEccCCcCCCCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcCCCCCcccccCC
Q 013403 197 DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL 276 (443)
Q Consensus 197 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 276 (443)
....+..+.+|+.+++.++.++.....+|.++.+|+.++|..+ ++..-..+|.++++|+.+.+..+ +...-..+|.++
T Consensus 278 ~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 278 PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 3334455789999999988888666788999999999999754 66555678999999999998755 443334556555
Q ss_pred C
Q 013403 277 K 277 (443)
Q Consensus 277 ~ 277 (443)
.
T Consensus 356 ~ 356 (379)
T 4h09_A 356 S 356 (379)
T ss_dssp S
T ss_pred C
Confidence 3
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.75 E-value=6.8e-06 Score=70.15 Aligned_cols=83 Identities=11% Similarity=-0.001 Sum_probs=65.6
Q ss_pred CCCEEECcCCcccccccccccCCCCCCEEEccCCc-CCCCCCccccCC----CCCcEEEcccCC-CCCCCchhhhCCCCC
Q 013403 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-LEGPLPPSLVNC----HHLEVLNVGNNQ-INDNFPNWLEILPEL 113 (443)
Q Consensus 40 ~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~L~~L 113 (443)
.|+.||++++.++..--..+.++++|++|+|++|. ++..--..++.+ ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45999999999886656677899999999999985 774333445554 479999999985 876555667889999
Q ss_pred cEEEeeccc
Q 013403 114 QVLILRSNR 122 (443)
Q Consensus 114 ~~L~L~~N~ 122 (443)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999875
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.37 E-value=2.7e-05 Score=67.71 Aligned_cols=116 Identities=13% Similarity=0.129 Sum_probs=79.3
Q ss_pred CCCCCCCCEEECcCC-cccc----cccccccCCCCCCEEEccCCcCCC----CCCccccCCCCCcEEEcccCCCCCCCch
Q 013403 35 FDSNLTHKVLDMRMN-NFNG----KIPRKFVKSCNLTSLNLNGNRLEG----PLPPSLVNCHHLEVLNVGNNQINDNFPN 105 (443)
Q Consensus 35 Ls~n~~L~~LdLs~n-~l~~----~~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 105 (443)
+.+|+.|+.|+|++| .|.. .+..++..-+.|+.|+|++|.+.. .+.+.+..-+.|++|+|+.|.|+.....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345588899999985 7763 245666778899999999999883 3344555678999999999999864333
Q ss_pred ----hhhCCCCCcEEEeeccc---CcCCCCCCC--CccCCCCCcEEEccCCccc
Q 013403 106 ----WLEILPELQVLILRSNR---FWGPIGENT--TIVPFPSLRIIDLSHNEFT 150 (443)
Q Consensus 106 ----~~~~L~~L~~L~L~~N~---l~~~~~~~~--~~~~l~~L~~L~Ls~n~l~ 150 (443)
++..-+.|++|+|++|. +.......+ .+..-+.|+.|+++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 34445679999998652 211100000 1245678999999887654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.15 E-value=0.00023 Score=61.79 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=73.1
Q ss_pred CCCccEEeccCC-CCCCcCC-CCCCCCCEEECCCCCCCCEEECcCCccccc----ccccccCCCCCCEEEccCCcCCCC-
Q 013403 6 IATLYYLDLSNN-FLTNIEY-FPPTNMTQLNFDSNLTHKVLDMRMNNFNGK----IPRKFVKSCNLTSLNLNGNRLEGP- 78 (443)
Q Consensus 6 ~~~L~~L~Ls~n-~l~~~~~-~~~~~L~~L~Ls~n~~L~~LdLs~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~- 78 (443)
-+.|+.|+|++| .|....- .-.. -|..|+.|+.|+|++|.|... +...+..-+.|++|+|++|.|+..
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~-----aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIE-----AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHH-----HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHH-----HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 356677777764 5543211 0000 022346789999999999743 444555678899999999999843
Q ss_pred ---CCccccCCCCCcEEEcccCC---CCCC----CchhhhCCCCCcEEEeecccC
Q 013403 79 ---LPPSLVNCHHLEVLNVGNNQ---INDN----FPNWLEILPELQVLILRSNRF 123 (443)
Q Consensus 79 ---~p~~~~~l~~L~~L~Ls~N~---l~~~----~p~~~~~L~~L~~L~L~~N~l 123 (443)
+.+++..-+.|++|+|++|. +... +...+..=+.|+.|+++.|..
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 33445666789999998763 3322 234455567899999987754
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.96 E-value=0.0018 Score=52.38 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=24.2
Q ss_pred EEEccCCcCC-CCCchhcCCCCCCCEEecCCCcCCCCCCccccCCCCCCeeecCCCcC
Q 013403 209 TIDLSSNKFQ-GGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML 265 (443)
Q Consensus 209 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 265 (443)
.++.++++++ ..+|..+ .++|++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 2333221 12345555555555443334444444444444444433
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.81 E-value=0.0023 Score=51.70 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=16.6
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCcEEEcccCCC
Q 013403 65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI 99 (443)
Q Consensus 65 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 99 (443)
|++|+|++|.|+...+..|..+++|++|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44555555555433333344444555555554444
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.38 E-value=15 Score=27.39 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=23.8
Q ss_pred cCCCCCCccccCCCCCcEEEcccCCCCCCCchhhhCCCCCcEEEeec
Q 013403 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (443)
Q Consensus 74 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~L~~L~~L~L~~ 120 (443)
.++..-..+|.+|++|+.+.+-.+ ++.+...+|.++.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344334445555666666655543 3333445555666666666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.59 E-value=12 Score=27.92 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=34.1
Q ss_pred CcccccccccccCCCCCCEEEccCCcCCCCCCccccCCCCCcEEEcccC
Q 013403 49 NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN 97 (443)
Q Consensus 49 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 97 (443)
..++..-..+|.++.+|+.+.+..+ ++..-..+|.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455555677888888888888765 44355667888888888887653
No 167
>1e9k_A CAMP specific phosphodiesterase PDE4D5; hydrolase; NMR {Homo sapiens} SCOP: j.87.1.1
Probab=20.31 E-value=16 Score=20.98 Aligned_cols=13 Identities=54% Similarity=0.756 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhc
Q 013403 430 LLESLIKILREKI 442 (443)
Q Consensus 430 ~~~~~~~~~~~~~ 442 (443)
+-|.|.|+|||..
T Consensus 14 lnedlvk~lrenl 26 (38)
T 1e9k_A 14 LNEDLVKSLRENL 26 (38)
T ss_dssp HHHHHTTTTTTTS
T ss_pred ccHHHHHHHHHHh
Confidence 4578888888864
Done!