BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013405
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa
Binding Protein
Length = 116
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 339 GSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYV 393
G++VK++LY L+K AT GPC P+P + +A W+AW LG++ E A + YV
Sbjct: 35 GNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYV 89
>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From
Babesia Bovis T2bo
Length = 96
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 319 FGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWK 378
F AAV +V N +D K+ Y +K ATVG C +P+P L++ + W AW
Sbjct: 14 FDAAVKYVSNTTTM----MASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWN 69
Query: 379 QLGNMTPEIAMEQYVTILSRSIP 401
L M+ E A E YV +L P
Sbjct: 70 ALRGMSTESAKEAYVKLLDTLAP 92
>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|C Chain C, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|D Chain D, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|E Chain E, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|F Chain F, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
Length = 106
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 314 ELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARAN 373
+ ++ F AAV+ + N G ++ ++ Y +K AT+GPC P+P R
Sbjct: 7 DCQKQFQAAVSVIQNLPKNGSYRPSYEEM-LRFYSYYKQATMGPCLVPRPGFWDPIGRYK 65
Query: 374 WNAWKQLGNMTPEIAMEQYVT 394
W+AW LG M+ E AM Y+T
Sbjct: 66 WDAWNSLGKMSREEAMSAYIT 86
>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From
Human Cdna
Length = 109
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANW 374
L LF A A + G I + + LY +K VG C P+P + W
Sbjct: 8 LAELFEKAAAHL-----QGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKW 62
Query: 375 NAWKQLGNMTPEIAMEQYVTILSRSIPG 402
AWK LG+ +P AM++Y+ ++ + PG
Sbjct: 63 EAWKALGDSSPSQAMQEYIAVVKKLDPG 90
>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
pdb|3FLV|B Chain B, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
Length = 119
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 316 ERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWN 375
E F AAV + + G +++ ++ Y +K AT GPC+ +P R W+
Sbjct: 25 ETRFEAAVKVIQSLPKNGSFQPT-NEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWD 83
Query: 376 AWKQLGNMTPEIAMEQYV 393
AW LG+MT E AM YV
Sbjct: 84 AWSSLGDMTKEEAMIAYV 101
>pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum
Length = 89
Score = 48.1 bits (113), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANW 374
+ ++F V+F+ R ++ +++K+ LY +K +T+G C +P A K R +
Sbjct: 2 MAQVFEECVSFING---LPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKY 58
Query: 375 NAWKQLGNMTPEIAMEQYVTILSRSIP 401
AWK + N+ E A ++YV I+S P
Sbjct: 59 EAWKSVENLNREDAQKRYVDIVSEIFP 85
>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded Human
Acbp
Length = 86
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 346 LYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYV 393
+YG +K ATVG +P L + +A W+AW +L + E AM+ Y+
Sbjct: 27 IYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYI 74
>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human L-Acbp
pdb|2CB8|B Chain B, High Resolution Crystal Structure Of Liganded Human L-Acbp
Length = 87
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 346 LYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYV 393
+YG +K ATVG +P L + +A W+AW +L + E AM+ Y+
Sbjct: 28 IYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYI 75
>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|B Chain B, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|C Chain C, Crystal Structure Of Acbp From Armadillo Harderian Gland
Length = 86
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 346 LYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYV 393
+Y +K ATVG +P L +A W+AW QL + E AM+ Y+
Sbjct: 27 IYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKGTSKEDAMKSYI 74
>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein From
Yeast
Length = 86
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 339 GSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSR 398
+D ++LY L+K ATVG + +P + R W AW+ L + E A ++Y+ ++ +
Sbjct: 20 STDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALVDQ 79
Query: 399 SI 400
I
Sbjct: 80 LI 81
>pdb|3FP5|A Chain A, Crystal Structure Of Acbp From Moniliophthora Perniciosa
Length = 106
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 341 DVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTIL 396
D ++ Y K ATVG +P + + +A W+AWK + + E+A ++YV L
Sbjct: 29 DEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWKSVEGTSKEVAYQKYVEKL 84
>pdb|1HB6|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In
Orthorhombic Crystal Form
pdb|1HB8|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|B Chain B, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|C Chain C, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1NTI|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp
pdb|1NVL|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp, In Complex With
Palmitoyl-Coenzyme A
pdb|1ACA|A Chain A, Three-Dimensional Structure Of The Complex Between
Acyl-Coenzyme A Binding Protein And Palmitoyl-Coenzyme A
pdb|2ABD|A Chain A, The Three-Dimensional Structure Of Acyl-Coenzyme A Binding
Protein From Bovine Liver. Structural Refinement Using
Heteronuclear Multidimensional Nmr Spectroscopy
Length = 86
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 346 LYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYV 393
+Y +K ATVG +P L +A W+AW +L + E AM+ Y+
Sbjct: 27 IYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYI 74
>pdb|3EPY|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
pdb|3EPY|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
Length = 89
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 345 QLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVT 394
+LYGL+K A VG P L + +A W AW ++ E A Y++
Sbjct: 29 ELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYIS 78
>pdb|3GK3|A Chain A, Crystal Structure Of Acetoacetyl-Coa Reductase From
Burkholderia Pseudomallei 1710b
pdb|3GK3|B Chain B, Crystal Structure Of Acetoacetyl-Coa Reductase From
Burkholderia Pseudomallei 1710b
pdb|3GK3|C Chain C, Crystal Structure Of Acetoacetyl-Coa Reductase From
Burkholderia Pseudomallei 1710b
pdb|3GK3|D Chain D, Crystal Structure Of Acetoacetyl-Coa Reductase From
Burkholderia Pseudomallei 1710b
Length = 269
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 306 DWEGIERTELERLFGAAVAFVGNKC--NAGRISSIGS 340
DW+ + RT+L+ +F F+ GRI +IGS
Sbjct: 126 DWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGS 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,315,635
Number of Sequences: 62578
Number of extensions: 428934
Number of successful extensions: 767
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 18
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)