BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013406
         (443 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6
           PE=1 SV=2
          Length = 1324

 Score = 40.8 bits (94), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 26/105 (24%)

Query: 181 PGP----PPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATY-NPLIGRKVWT 235
           PGP    P  SK KKP      L   GQ          P+   S   TY + ++G++V  
Sbjct: 87  PGPDTPSPVQSKFKKP------LLVIGQT---------PSPPQSVVITYGDEVVGKQVRV 131

Query: 236 RWPEDNHFYEAVITDYNPNEGRHALVYD------INTADETWEWV 274
            WP D  +Y+  +T Y+  EG+H + Y+      ++   E  EWV
Sbjct: 132 YWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKTEWV 176


>sp|Q7Z589|EMSY_HUMAN Protein EMSY OS=Homo sapiens GN=EMSY PE=1 SV=2
          Length = 1322

 Score = 40.0 bits (92), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 54 IHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR 99
          +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR
Sbjct: 20 LRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHR 64


>sp|Q8BMB0|EMSY_MOUSE Protein EMSY OS=Mus musculus GN=Emsy PE=1 SV=2
          Length = 1264

 Score = 40.0 bits (92), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 54 IHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR 99
          +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR
Sbjct: 20 LRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHR 64


>sp|Q7ZUV7|EMSY_DANRE Protein EMSY OS=Danio rerio GN=emsy PE=2 SV=1
          Length = 1173

 Score = 38.1 bits (87), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 54  IHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILR 113
           +  +E +AY+ V+ A +AQ D +T +K+ L+ EL + L +S E HR  + +   D+ +  
Sbjct: 20  LRKLELEAYAGVISALRAQGD-LTKDKKELLGELTRVLSISTERHRAEVRRAVNDERLTT 78

Query: 114 I 114
           I
Sbjct: 79  I 79


>sp|O55225|OTOG_MOUSE Otogelin OS=Mus musculus GN=Otog PE=1 SV=2
          Length = 2910

 Score = 36.2 bits (82), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 139  PSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTG 198
            P P    +     ++ S   L+ G+PS G H     + ++L P  PP      P   S  
Sbjct: 1744 PHPAQHTTTAPGPSALSPGILAAGSPSTGAHRPGATALASLEPTRPPHLLSGLPLDTSLP 1803

Query: 199  LAGRGQ---VANRGSSGAFPANGPSEAAT 224
            LA  G    VA  GS G  P   P   AT
Sbjct: 1804 LAKVGTSAPVATPGSKGYIPTPPPQHQAT 1832


>sp|B6RSP1|PKHA7_DANRE Pleckstrin homology domain-containing family A member 7 OS=Danio
           rerio GN=plekha7 PE=2 SV=2
          Length = 1197

 Score = 33.1 bits (74), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 22/123 (17%)

Query: 108 DDIILRIREWRKASGLQPGMPSIPQPVHDPAP--SPTVSASRKKTKTSQSVASLSTGAPS 165
           D+ + ++ EW++    + G PS   PV+ PAP  S  VS++R  +  S+SV         
Sbjct: 493 DNTVWQLFEWQQRQQFRHGSPSA--PVYTPAPDYSTAVSSTRNNSDVSRSV--------- 541

Query: 166 PGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQV---ANRGSSGAFPANGPSEA 222
                SV P+ + + P  PPG++   P+   T  A R  V    +R      P+N P   
Sbjct: 542 -----SVPPTLADIPPPGPPGARLMSPRRPHTP-AERVTVRPLEDRPIVEVPPSNSPHRL 595

Query: 223 ATY 225
            +Y
Sbjct: 596 RSY 598


>sp|Q7Z4S6|KI21A_HUMAN Kinesin-like protein KIF21A OS=Homo sapiens GN=KIF21A PE=1 SV=2
          Length = 1674

 Score = 33.1 bits (74), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 84  ITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTV 143
           I +L+K+ R  D + R L ++    +++LR R+  + + L+  +  +   V         
Sbjct: 795 IAQLKKDQRKRDHQLRLLEAQKRNQEVVLR-RKTEEVTALRRQVRPMSDKVAGKVTRKLS 853

Query: 144 SASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGR 202
           S+      T  S A++ T A   G    ++   + ++  P P + G + K    GL GR
Sbjct: 854 SSDAPAQDTGSSAAAVETDASRTGAQQKMRIPVARVQALPTPATNGNRKKYQRKGLTGR 912


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.129    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,483,748
Number of Sequences: 539616
Number of extensions: 9443762
Number of successful extensions: 36958
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 617
Number of HSP's that attempted gapping in prelim test: 33951
Number of HSP's gapped (non-prelim): 3281
length of query: 443
length of database: 191,569,459
effective HSP length: 121
effective length of query: 322
effective length of database: 126,275,923
effective search space: 40660847206
effective search space used: 40660847206
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)