BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013408
         (443 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W7E|A Chain A, Nmr Ensemble Of Fasciclin-Like Protein From Rhodobacter
           Sphaeroides
 pdb|1W7D|A Chain A, Nmr Structure Of Fasciclin-Like Protein From Rhodobacter
           Sphaeroides
          Length = 137

 Score = 37.4 bits (85), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 8/129 (6%)

Query: 70  YTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTL 129
           +T L    E A L+  L+   G    T+FAP + A    L       LL+P N + L  +
Sbjct: 15  FTTLLTAAEAAGLVDTLK---GDGPFTVFAPTDAAFAA-LPEGTVEDLLKPENKEKLTEI 70

Query: 130 LLHHIVSTRIELNRTATESTQHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVI 189
           L +H+V   + ++   TE     T+   ++ +T    G   ++   +  P+ VD  +GVI
Sbjct: 71  LTYHVVPGEV-MSSDLTEGMTAETVEGGALTVTLE--GGPKVNGVSISQPD-VDASNGVI 126

Query: 190 HGIERLLIP 198
           H I+ +L+P
Sbjct: 127 HVIDGVLMP 135


>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
           Complex With Plp.
 pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
           Complex With Plp
          Length = 515

 Score = 28.9 bits (63), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 14/65 (21%)

Query: 357 QTEESMYNAVRRFGKISYDTLRLPHKVLA----------QEADGSVKFGHGDGSAYLFDP 406
           QT   + + ++R   ++++    PHK+LA          Q+    +K  HG  ++YLF  
Sbjct: 306 QTHRHLLDGIQRADSVAWN----PHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQ 361

Query: 407 DIYTD 411
           D + D
Sbjct: 362 DKFYD 366


>pdb|2POK|A Chain A, Crystal Structure Of A M20 Family Metallo Peptidase From
           Streptococcus Pneumoniae
 pdb|2POK|B Chain B, Crystal Structure Of A M20 Family Metallo Peptidase From
           Streptococcus Pneumoniae
          Length = 481

 Score = 28.5 bits (62), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 290 YGGYNEMAD--ILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTT 335
           YGG  E A   +L  L SL    GR++ EG    V  PN+  MA L T
Sbjct: 245 YGGVVESAPWYLLQALQSLRAADGRILVEGLYEEVQEPNEREMALLET 292


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,573,855
Number of Sequences: 62578
Number of extensions: 486572
Number of successful extensions: 1169
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1158
Number of HSP's gapped (non-prelim): 13
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)