Query 013409
Match_columns 443
No_of_seqs 176 out of 355
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:33:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2674 Cysteine protease requ 100.0 1E-110 2E-115 849.8 29.5 345 39-402 17-373 (409)
2 PF03416 Peptidase_C54: Peptid 100.0 4E-100 9E-105 753.8 21.9 274 93-383 2-278 (278)
3 PF07910 Peptidase_C78: Peptid 97.9 1.5E-05 3.1E-10 77.5 4.9 32 299-331 149-185 (218)
4 KOG2433 Uncharacterized conser 97.2 0.00062 1.3E-08 71.0 6.9 69 121-212 402-473 (577)
5 KOG4696 Uncharacterized conser 90.6 0.2 4.2E-06 51.1 2.9 38 107-144 173-214 (393)
6 KOG4696 Uncharacterized conser 75.3 1.5 3.3E-05 44.9 1.5 22 122-143 124-145 (393)
7 KOG2674 Cysteine protease requ 62.6 1 2.2E-05 47.7 -2.8 72 120-213 135-206 (409)
8 PF13529 Peptidase_C39_2: Pept 43.1 28 0.00061 29.3 3.4 30 297-326 114-144 (144)
9 PF15644 Tox-PL: Papain fold t 39.9 25 0.00055 30.3 2.6 24 303-327 84-107 (111)
10 cd01245 PH_RasGAP_CG5898 RAS G 37.3 1.3E+02 0.0028 25.9 6.5 75 308-384 17-97 (98)
11 cd02549 Peptidase_C39A A sub-f 35.9 58 0.0013 27.9 4.3 26 302-327 89-115 (141)
12 KOG2944 Glyoxalase [Carbohydra 24.5 51 0.0011 31.2 2.0 69 308-385 59-136 (170)
13 cd03073 PDI_b'_ERp72_ERp57 PDI 23.7 1.5E+02 0.0033 25.6 4.8 39 363-401 17-60 (111)
No 1
>KOG2674 consensus Cysteine protease required for autophagy - Apg4p/Aut2p [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-111 Score=849.77 Aligned_cols=345 Identities=43% Similarity=0.815 Sum_probs=310.2
Q ss_pred HHHH-HhcchhhhHHHHhcCCCCCCCCCCCCcEEEeCceecCCccccccccCCCcchHHHHHhccccEEEeecCCCccCC
Q 013409 39 VKRL-VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIG 117 (443)
Q Consensus 39 ~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~vwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~df~SriWfTYR~~F~pI~ 117 (443)
+|++ +.+...++..++++.+..++++..+++||+||++|.+..++. ++|+.||.||||||||++|+||+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lg~~y~is~~~~----------e~f~~D~~Sriw~TYR~~F~pig 86 (409)
T KOG2674|consen 17 VKTLGEASSHIRFLGKTVLFAELENIESGGEDVWILGRRYKISTEES----------EEFLSDVSSRLWFTYRRGFSPIG 86 (409)
T ss_pred HHHHHhhhhhhhhhhheecccccccCCCCCcceEEEeeeeeeccCHH----------HHHHHhhhhcceeeccCCCCccc
Confidence 5554 667777888889999999999999999999999999987641 79999999999999999999999
Q ss_pred CCcccccCCcceeccchhHHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhhhcCCCCCCCchhhHHHHHHHHcCCCCccc
Q 013409 118 DSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSW 197 (443)
Q Consensus 118 ~s~~TSD~GWGCMLRsgQMLLAqAL~~~~LGrdwr~~~~~~~~~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~pGeW 197 (443)
++++|||+|||||||||||||||||+++||||+|+|+..++.+++|.+||++|.|.|.||||||||+++|..+||++|+|
T Consensus 87 ~t~~ttD~GWGCMlR~gQMllaqaL~~~~lGRdw~w~~~~~~~~~y~~il~~F~D~~~a~~SiHq~~~~G~~~~~~~g~W 166 (409)
T KOG2674|consen 87 GTGPTTDCGWGCMLRCGQMLLAQALICRHLGRDWRWTDEKRLEEEYLKILNLFEDEPDAPFSIHQIVQMGVGEGKAVGSW 166 (409)
T ss_pred CCCcccCcceeeEEehhHHHHHHHHHHhhcccccccccccccchHHHHHHHhhcCCCccccCHHHHHHHHhhccCCCccc
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeeCC--------CCCCCCCCceeeccccccccccccCCCCCCccEE
Q 013409 198 VGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGD--------EDGERGGAPVVCIDDASRHCSVFSKGQADWTPIL 269 (443)
Q Consensus 198 fGPs~~a~~i~~L~~~~~~~~~~~~~~~~l~v~v~s~~--------~dge~~~~~vv~~dd~~~~c~~~~~~~~~w~plL 269 (443)
||||++|+++++|.... .+.+.++||+.+. +...+++.+.+++.+..+.|.+++.+..+|+|||
T Consensus 167 fGP~~~a~~~~~L~~~~--------~~~~~~~~v~~~~~vv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ewkpll 238 (409)
T KOG2674|consen 167 FGPNTVAQVLKKLARFD--------PWSSLAVYVAMDNAVIIRDIVEKCRRGPLPALTIEDATKQSLEFSNGITEWKPLL 238 (409)
T ss_pred cCCcHHHHHHHHhhccC--------CCCCccEEEecccceEEeeeehhcccCCcccceecccchhhcccCCCCCCCcceE
Confidence 99999999999998753 2334566665432 3345567788888888888888988899999999
Q ss_pred EEEeeeecCCCCCcchHHHHHHhhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcccccccCCCCCCCCCCccccC
Q 013409 270 LLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSD 349 (443)
Q Consensus 270 lLIPlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~S~YFvG~q~d~LiYLDPH~~Q~av~~~~~~~~~~~~SyHc~ 349 (443)
||||||||++.|||.|+++||++|++||||||+||||+||+||||||||+|||||||+||++|++++ ....+.+||||+
T Consensus 239 LLVPvRLG~~~iNp~Yvp~lk~~f~~~q~lGI~GGkP~~S~YFvGyq~d~l~YLDPH~~Q~~V~vs~-~~~~~~esfHC~ 317 (409)
T KOG2674|consen 239 LLIPLRLGITSINPSYVPALKECFEMPQSVGIIGGRPNHSLYFVGYQGDELFYLDPHYTQPAVEVSK-AKDVPDETFHCQ 317 (409)
T ss_pred EEEEeeecccccChHHHHHHHHHhcchhhceeccCCCCcceEEEEEecceEEEeCCccCcccccccc-cCCCCccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999873 223467899999
Q ss_pred CcccccccccCCccEEEEEeCChhhHHHHHHHHHHHHhhcCC---CCcEEEecCCC
Q 013409 350 VIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNG---APLFTVTQTHK 402 (443)
Q Consensus 350 ~~r~m~i~~lDPSmalGFyc~~~~Df~df~~~i~~l~~~~~~---~pLF~v~~~~p 402 (443)
.++||++.+|||||||||||++++||++||.+++++...++. +|||+..+.+.
T Consensus 318 ~~~km~f~~mDPS~alGF~c~~~~dF~~~c~~l~k~~~~s~~~~~~~lf~~~~~h~ 373 (409)
T KOG2674|consen 318 SLRKMAFEDMDPSLALGFYCKDEDDFDNLCSELKKSLSLSSALEMFELFTRVPSHW 373 (409)
T ss_pred chhhcchhhcCcceEEEEEecCHHHHHHHHHHHHHHhccccCcccccceecccccc
Confidence 999999999999999999999999999999999998766666 55665555544
No 2
>PF03416 Peptidase_C54: Peptidase family C54 This family belongs to family C54 of the peptidase classification.; InterPro: IPR005078 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C54 (Aut2 peptidase family, clan CA), which are a group of proteins of unknown function.; PDB: 2CY7_A 2ZZP_A 2D1I_B 2Z0E_A 2Z0D_A 2P82_D.
Probab=100.00 E-value=4.1e-100 Score=753.77 Aligned_cols=274 Identities=48% Similarity=0.917 Sum_probs=213.0
Q ss_pred chHHHHHhccccEEEeecCCCccCCCCcccccCCcceeccchhHHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhhhcCC
Q 013409 93 GLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGD 172 (443)
Q Consensus 93 ~~~~f~~df~SriWfTYR~~F~pI~~s~~TSD~GWGCMLRsgQMLLAqAL~~~~LGrdwr~~~~~~~~~~~~~IL~lF~D 172 (443)
+.++|++||+||||||||+||+||+++++|||+|||||||||||||||||++|++||+|++....+.++.+.+||+||.|
T Consensus 2 ~~~~~~~d~~s~iwfTYR~~F~~i~~s~~tSD~GWGCmlRs~QMlLAqaL~~~~lgr~~~~~~~~~~~~~~~~il~~F~D 81 (278)
T PF03416_consen 2 NKEEFLKDFSSRIWFTYRKGFPPIPGSGLTSDCGWGCMLRSGQMLLAQALLRHHLGRDWRWPDNSDNNEEYRRILSLFQD 81 (278)
T ss_dssp THHHHHHHHHCSB---EEESS--TTTTS-SB-TTT-HHHHHHHHHHHHHHHHHHC-TT--TTTTSS--HHHHHHHHTTSS
T ss_pred cHHHHHHHHhhheEEeccCCCCCCCCCCcccCCCcccccchhHHHHHHHHHHHhhcccccccccccCcHHHHHHHHhcCC
Confidence 46899999999999999999999999999999999999999999999999999999999998776667789999999999
Q ss_pred CCCCCchhhHHHHHHHHc-CCCCccccCchHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeeCCCCCCCCCCceeecccc
Q 013409 173 SETSPFSIHNLLQAGKAY-GLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDA 251 (443)
Q Consensus 173 ~~~apFSIH~iv~~G~~~-gk~pGeWfGPs~~a~~i~~L~~~~~~~~~~~~~~~~l~v~v~s~~~dge~~~~~vv~~dd~ 251 (443)
+++||||||||+++|.++ ||+||+||||+++|++|++|++.. ....++|||++++ +++.+|+
T Consensus 82 ~~~apfSIh~i~~~g~~~~g~~~G~W~gPs~~~~~l~~l~~~~--------~~~~l~v~v~~d~---------~i~~~d~ 144 (278)
T PF03416_consen 82 SPSAPFSIHNIVQEGKSEFGKKPGEWFGPSTIAQALKKLVNEA--------DLSGLRVYVSSDG---------TIYYDDV 144 (278)
T ss_dssp STTSTTSHHHHHHHHHTT-T--TTS-B-HHHHHHHHHHHHCC---------TTT--EEEE-BTT---------EEEHHHH
T ss_pred CCCCcchHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHHHhc--------cccCceEEEeecc---------ccchhHH
Confidence 999999999999999987 999999999999999999999743 3446899998753 6788888
Q ss_pred ccccccc--cCCCCCCccEEEEEeeeecCCCCCcchHHHHHHhhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcc
Q 013409 252 SRHCSVF--SKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQ 329 (443)
Q Consensus 252 ~~~c~~~--~~~~~~w~plLlLIPlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~S~YFvG~q~d~LiYLDPH~~Q 329 (443)
.+.|... ......|+|||||||+|||++++||+|+++|+++|++|||||||||||++|+||||+|+|+|||||||+||
T Consensus 145 ~~~~~~~~~~~~~~~~~~vLlliplrLGl~~in~~Y~~~l~~~l~~pq~vGiiGG~p~~a~YfvG~~~d~liYLDPH~~Q 224 (278)
T PF03416_consen 145 EELCSNSNPTKQSSWWKPVLLLIPLRLGLDKINPKYIPSLKSLLSLPQSVGIIGGRPNSALYFVGFQGDQLIYLDPHYVQ 224 (278)
T ss_dssp HHHHCCS-S-----CE--EEEEEEEE-SSSS--GGGHHHHHHHCCSTTEEEEEEEETTEEEEEEEEETTEEEEE---SEE
T ss_pred HHHHhhhccccccccCceEEEEEEeecCCCCCCHHHHHHHHHHhCCcccceeeccCCCceEEEEEEccCeEEEECCCCCe
Confidence 8776432 12345789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCccccCCcccccccccCCccEEEEEeCChhhHHHHHHHHH
Q 013409 330 PVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARAS 383 (443)
Q Consensus 330 ~av~~~~~~~~~~~~SyHc~~~r~m~i~~lDPSmalGFyc~~~~Df~df~~~i~ 383 (443)
+|++....+.+.+.+||||..+++|++++|||||+|||||+|++||++||++|+
T Consensus 225 ~a~~~~~~~~~~~~~s~h~~~~~~~~~~~lDPS~~lgF~~~~~~d~~~~~~~i~ 278 (278)
T PF03416_consen 225 PAVDSQNNNFELDDSSYHCSSPRKMPISKLDPSMALGFYCRNEEDFEDFCKRIQ 278 (278)
T ss_dssp E-----TTS-----GGGC-SSSEEEEGGGS-SEEEEEEEESSHHHHHHHHHHHH
T ss_pred eCCccCCCCCcCCCCceecCCcccCcHhhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 999876655544458999999999999999999999999999999999999985
No 3
>PF07910 Peptidase_C78: Peptidase family C78; InterPro: IPR012462 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry contains UfSP1 and UfSP2, which are cysteine peptidases required for the processing and activation of Ubiquitin fold modifier 1 (Ufm1, IPR005375 from INTERPRO) and for its release from conjugated cellular proteins. UfSP1 and UfSP2 are 217 aa and 461 aa respectively [, ]. The peptidases belong to MEROPS peptidase family C78, clan CA. The UfSP2 family have an N-terminal extension with one or more zinc finger domains of the C2H2 type (IPR007087 from INTERPRO), which have been shown to be involved in protein:protein interaction. UfSP2 is present in most, if not all, multi-cellular organisms including plants, nematodes, flies, and mammals, whereas UfSP1 is not present in plants and nematodes []. ; PDB: 3OQC_B 2Z84_A.
Probab=97.88 E-value=1.5e-05 Score=77.45 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=22.4
Q ss_pred eEEecCCCCceEEEEEEec-----CceEeeCCCCcccc
Q 013409 299 LGIVGGKPGASTYIVGVQE-----ESAIYLDPHDVQPV 331 (443)
Q Consensus 299 vGIiGGkP~~S~YFvG~q~-----d~LiYLDPH~~Q~a 331 (443)
--++|| ..||.=+||+.- -+|+.||||++-.+
T Consensus 149 Piylqh-~ghS~TIvGie~~~~g~~~LLVlDP~~~~~~ 185 (218)
T PF07910_consen 149 PIYLQH-DGHSRTIVGIERNKDGEVNLLVLDPHYTGSD 185 (218)
T ss_dssp -EEEEE-TTEEEEEEEEEE-TT--EEEEEE-TT--S-S
T ss_pred CeEeCc-cccceEEEEEEECCCCCEEEEEECCCCCCHH
Confidence 345666 999999999975 47999999987764
No 4
>KOG2433 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.00062 Score=71.02 Aligned_cols=69 Identities=28% Similarity=0.486 Sum_probs=42.2
Q ss_pred ccccCCcceeccchhHHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhhhcCC---CCCCCchhhHHHHHHHHcCCCCccc
Q 013409 121 ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGD---SETSPFSIHNLLQAGKAYGLAAGSW 197 (443)
Q Consensus 121 ~TSD~GWGCMLRsgQMLLAqAL~~~~LGrdwr~~~~~~~~~~~~~IL~lF~D---~~~apFSIH~iv~~G~~~gk~pGeW 197 (443)
-.-|.||||..||-|.+-.--.+. |- + .++ -+.+++|-+...| .| |.| +---+|
T Consensus 402 ~idD~GWGCAYRSlQTIcSWFilq---GY----T-~~p-IPtHrEiQqaLvdi~DKp-A~F-------------VGSrQW 458 (577)
T KOG2433|consen 402 GIDDSGWGCAYRSLQTICSWFILQ---GY----T-DKP-IPTHREIQQALVDIQDKP-AKF-------------VGSRQW 458 (577)
T ss_pred ccccCCcchhhHhHHHHHHHHHHc---Cc----c-CCC-CCcHHHHHHHHHhccCcc-cce-------------ecccce
Confidence 357999999999999876654432 21 1 111 1234444444333 22 111 112379
Q ss_pred cCchHHHHHHHHHHH
Q 013409 198 VGPYAMCRSWEALAR 212 (443)
Q Consensus 198 fGPs~~a~~i~~L~~ 212 (443)
.|-+.+..++..|++
T Consensus 459 IGStEis~vLn~ll~ 473 (577)
T KOG2433|consen 459 IGSTEISFVLNELLK 473 (577)
T ss_pred ecchhHHHHHHHHhc
Confidence 999999999999986
No 5
>KOG4696 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.63 E-value=0.2 Score=51.10 Aligned_cols=38 Identities=39% Similarity=0.678 Sum_probs=29.5
Q ss_pred EeecCCCccCCC----CcccccCCcceeccchhHHHHHHHHH
Q 013409 107 ISYRKGFDPIGD----SKITSDVGWGCMLRSSQMLVAQALLF 144 (443)
Q Consensus 107 fTYR~~F~pI~~----s~~TSD~GWGCMLRsgQMLLAqAL~~ 144 (443)
...-|||.-|+. ...--|.||||..|+.|||++..|..
T Consensus 173 ~awnkGFDi~~ALH~D~R~~G~K~W~~~~~~~qml~s~gl~~ 214 (393)
T KOG4696|consen 173 SAWNKGFDIIEALHTDVRSLGDKGWGCGYRNFQMLDSEGLAQ 214 (393)
T ss_pred HHHhcccchhhhhcccchhcccccccccchhHHHHHHHHHHh
Confidence 455678886653 23456789999999999999999975
No 6
>KOG4696 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.30 E-value=1.5 Score=44.87 Aligned_cols=22 Identities=41% Similarity=0.786 Sum_probs=19.5
Q ss_pred cccCCcceeccchhHHHHHHHH
Q 013409 122 TSDVGWGCMLRSSQMLVAQALL 143 (443)
Q Consensus 122 TSD~GWGCMLRsgQMLLAqAL~ 143 (443)
.=|.||||.-|.+||.+|.-|.
T Consensus 124 ~~d~Gwgcgw~niqmq~shll~ 145 (393)
T KOG4696|consen 124 GIDRGWGCGWRNIQMQISHLLY 145 (393)
T ss_pred ccccccCccccchHHHHHHHHh
Confidence 3489999999999999999765
No 7
>KOG2674 consensus Cysteine protease required for autophagy - Apg4p/Aut2p [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.64 E-value=1 Score=47.66 Aligned_cols=72 Identities=7% Similarity=-0.138 Sum_probs=59.8
Q ss_pred cccccCCcceeccchhHHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhhhcCCCCCCCchhhHHHHHHHHcCCCCccccC
Q 013409 120 KITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVG 199 (443)
Q Consensus 120 ~~TSD~GWGCMLRsgQMLLAqAL~~~~LGrdwr~~~~~~~~~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~pGeWfG 199 (443)
.++...+|+|+.+|.++|++.+...+ +.|-+||++++.|.+ +...+...+++++.|++
T Consensus 135 il~~F~D~~~a~~SiHq~~~~G~~~~------------------~~~g~WfGP~~~a~~----~~~L~~~~~~~~~~~~v 192 (409)
T KOG2674|consen 135 ILNLFEDEPDAPFSIHQIVQMGVGEG------------------KAVGSWFGPNTVAQV----LKKLARFDPWSSLAVYV 192 (409)
T ss_pred HHHhhcCCCccccCHHHHHHHHhhcc------------------CCCccccCCcHHHHH----HHHhhccCCCCCccEEE
Confidence 68999999999999999999998643 247789999887766 66677788899999999
Q ss_pred chHHHHHHHHHHHH
Q 013409 200 PYAMCRSWEALARC 213 (443)
Q Consensus 200 Ps~~a~~i~~L~~~ 213 (443)
+-..+.+++.....
T Consensus 193 ~~~~~vv~~d~~~~ 206 (409)
T KOG2674|consen 193 AMDNAVIIRDIVEK 206 (409)
T ss_pred ecccceEEeeeehh
Confidence 98888877766554
No 8
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=43.13 E-value=28 Score=29.33 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=22.1
Q ss_pred ceeEEecCCCCceEEEEEEecCc-eEeeCCC
Q 013409 297 QSLGIVGGKPGASTYIVGVQEES-AIYLDPH 326 (443)
Q Consensus 297 qsvGIiGGkP~~S~YFvG~q~d~-LiYLDPH 326 (443)
..-+..++...|..-++||.++. +++.||+
T Consensus 114 ~~~~~~~~~~~H~vvi~Gy~~~~~~~v~DP~ 144 (144)
T PF13529_consen 114 NGDGYDGTYGGHYVVIIGYDEDGYVYVNDPW 144 (144)
T ss_dssp TTEEEEE-TTEEEEEEEEE-SSE-EEEE-TT
T ss_pred CCCCcCCCcCCEEEEEEEEeCCCEEEEeCCC
Confidence 34456677778999999999999 9999995
No 9
>PF15644 Tox-PL: Papain fold toxin 1; PDB: 3B21_A.
Probab=39.87 E-value=25 Score=30.29 Aligned_cols=24 Identities=38% Similarity=0.772 Sum_probs=16.9
Q ss_pred cCCCCceEEEEEEecCceEeeCCCC
Q 013409 303 GGKPGASTYIVGVQEESAIYLDPHD 327 (443)
Q Consensus 303 GGkP~~S~YFvG~q~d~LiYLDPH~ 327 (443)
||.+.|++..+ +++..+.||||=+
T Consensus 84 gg~~gHa~nvv-~~~G~i~~~D~Q~ 107 (111)
T PF15644_consen 84 GGGPGHAFNVV-NQNGKIVFLDPQS 107 (111)
T ss_dssp ----TTEEEEE-EE-SSEEEEBTTT
T ss_pred ccccceEEEEE-eCCCeEEEEeCCC
Confidence 44458999999 8988899999954
No 10
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=37.33 E-value=1.3e+02 Score=25.87 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=43.6
Q ss_pred ceEEEEEEe---cCceEeeCCCCcccccccCC-CCCCCCCCccccCCcc-cccccccCCcc-EEEEEeCChhhHHHHHHH
Q 013409 308 ASTYIVGVQ---EESAIYLDPHDVQPVINIGK-DDLEADTSTYHSDVIR-HIHLDSIDPSL-AIGFYCRDKDDFDDFCAR 381 (443)
Q Consensus 308 ~S~YFvG~q---~d~LiYLDPH~~Q~av~~~~-~~~~~~~~SyHc~~~r-~m~i~~lDPSm-alGFyc~~~~Df~df~~~ 381 (443)
+..||+... +..|.|+.++.-.....+.. .+. .....|-.... ..-+.=..|+- ..-|+|.+.+|-++|.+.
T Consensus 17 K~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~--~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~~er~~Wi~~ 94 (98)
T cd01245 17 KTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDA--YLYPVHDSLFGRPNCFQIVERALPTVYYSCRSSEERDKWIES 94 (98)
T ss_pred ceeEEEEecCCCCceEEEEcCCCCCCccceeecccc--EEEEccccccCCCeEEEEecCCCCeEEEEeCCHHHHHHHHHH
Confidence 678998753 48999999887544432210 111 01112211111 12233355665 677999999999999988
Q ss_pred HHH
Q 013409 382 ASK 384 (443)
Q Consensus 382 i~~ 384 (443)
|++
T Consensus 95 l~~ 97 (98)
T cd01245 95 LQA 97 (98)
T ss_pred Hhc
Confidence 764
No 11
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=35.86 E-value=58 Score=27.91 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=21.9
Q ss_pred ecCCCCceEEEEEEe-cCceEeeCCCC
Q 013409 302 VGGKPGASTYIVGVQ-EESAIYLDPHD 327 (443)
Q Consensus 302 iGGkP~~S~YFvG~q-~d~LiYLDPH~ 327 (443)
.++..+|..-++||. ++.+++.||..
T Consensus 89 ~~~~~gH~vVv~g~~~~~~~~i~DP~~ 115 (141)
T cd02549 89 SITPSGHAMVVIGYDRKGNVYVNDPGG 115 (141)
T ss_pred ccCCCCeEEEEEEEcCCCCEEEECCCC
Confidence 456677888999999 88999999974
No 12
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=24.45 E-value=51 Score=31.20 Aligned_cols=69 Identities=22% Similarity=0.394 Sum_probs=44.7
Q ss_pred ceEEEEEEecCceEeeCCCCcccccccCCCCCCC--------C-CCccccCCcccccccccCCccEEEEEeCChhhHHHH
Q 013409 308 ASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEA--------D-TSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDF 378 (443)
Q Consensus 308 ~S~YFvG~q~d~LiYLDPH~~Q~av~~~~~~~~~--------~-~~SyHc~~~r~m~i~~lDPSmalGFyc~~~~Df~df 378 (443)
-++||.|++....+-.+||.+-.++...+...+. + ...||- .+=+| =..|=.|=+.+|++.+
T Consensus 59 Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gtes~~~~~~~n--------gN~~p-rGfgHIci~V~di~sa 129 (170)
T KOG2944|consen 59 FSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTESPPDQAYLN--------GNKEP-RGFGHICIEVDDINSA 129 (170)
T ss_pred hHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCCCCcchhhcC--------CCCCC-CccceEEEEeCCHHHH
Confidence 3679999999999999999886555444333221 1 123442 33445 3344555566888999
Q ss_pred HHHHHHH
Q 013409 379 CARASKL 385 (443)
Q Consensus 379 ~~~i~~l 385 (443)
|.++++.
T Consensus 130 c~~lkek 136 (170)
T KOG2944|consen 130 CERLKEK 136 (170)
T ss_pred HHHHHHh
Confidence 9999864
No 13
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=23.69 E-value=1.5e+02 Score=25.58 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=32.6
Q ss_pred cEEEEEeC----ChhhHHHHHHHHHHHHhhcC-CCCcEEEecCC
Q 013409 363 LAIGFYCR----DKDDFDDFCARASKLAEESN-GAPLFTVTQTH 401 (443)
Q Consensus 363 malGFyc~----~~~Df~df~~~i~~l~~~~~-~~pLF~v~~~~ 401 (443)
+++.|||. +.++++.|...++++++... +.=+|-+++..
T Consensus 17 l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~ 60 (111)
T cd03073 17 LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKE 60 (111)
T ss_pred eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHH
Confidence 38889888 78999999999999998877 57778877654
Done!