Query 013409
Match_columns 443
No_of_seqs 176 out of 355
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 10:02:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cy7_A Cysteine protease APG4B 100.0 1E-114 5E-119 889.6 28.3 329 59-416 18-373 (396)
2 2p82_A Cysteine protease ATG4A 100.0 5E-114 2E-118 875.2 28.1 316 60-405 15-355 (355)
3 3oqc_A UFSP2, UFM1-specific pr 98.0 3.4E-05 1.2E-09 80.1 12.0 46 285-331 394-445 (481)
4 2z84_A UFSP1, UFM1-specific pr 97.9 5.2E-05 1.8E-09 72.2 10.0 27 303-329 144-175 (218)
5 1v61_A RAC/CDC42 guanine nucle 20.0 1.1E+02 0.0038 26.3 4.5 25 364-388 103-127 (132)
6 2fu4_A Ferric uptake regulatio 16.7 2.2E+02 0.0077 21.1 5.2 49 161-213 17-65 (83)
7 1nxi_A Conserved hypothetical 15.2 33 0.0011 29.6 -0.1 8 126-133 117-124 (132)
8 2xzm_O RPS13E; ribosome, trans 13.3 1.4E+02 0.0048 26.7 3.4 27 179-205 123-150 (153)
9 3u5c_N S27A, YS15, 40S ribosom 12.9 1.4E+02 0.0048 26.7 3.3 27 179-205 121-148 (151)
10 2rsg_A Collagen type IV alpha- 12.5 2.6E+02 0.0089 21.0 4.6 24 361-384 68-91 (94)
No 1
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A
Probab=100.00 E-value=1.3e-114 Score=889.58 Aligned_cols=329 Identities=34% Similarity=0.676 Sum_probs=283.4
Q ss_pred CCCCCCCCCCcEEEeCceecCCccccccccCCCcchHHHHHhccccEEEeecCCCccCCCCcccccCCcceeccchhHHH
Q 013409 59 SRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLV 138 (443)
Q Consensus 59 ~~~~~~~~~~~vwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~df~SriWfTYR~~F~pI~~s~~TSD~GWGCMLRsgQMLL 138 (443)
+..++|.+++||||||++|+..++ .++|++||+||||||||+|||||+++++|||+|||||||||||||
T Consensus 18 ~~~~~~~~~~pv~iLG~~y~~~~~-----------~~~fl~d~~SriWfTYR~~F~~I~~s~~TSD~GWGCMlRsgQMlL 86 (396)
T 2cy7_A 18 EFEDFPETSEPVWILGRKYSIFTE-----------KDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIF 86 (396)
T ss_dssp CCCCCCCCSSCEEETTEEECTTTC-----------HHHHHHHHHHSBCCCEEESCCCTTTTSCSBCTTTCHHHHHHHHHH
T ss_pred ccccCCCCCCcEEEeCcEecCCcC-----------HHHHHHHhhhcEEEEccCCCcccCCCCCCCCCCccceeeccHHHH
Confidence 457899999999999999998654 579999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCcCCCCCCCcHHHHHHhhhcCCCCCCCchhhHHHHHHHHcCCCCccccCchHHHHHHHHHHHHHhhhc
Q 013409 139 AQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAET 218 (443)
Q Consensus 139 AqAL~~~~LGrdwr~~~~~~~~~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~pGeWfGPs~~a~~i~~L~~~~~~~~ 218 (443)
||||++|||||+|||.+.+..+++|.+||+||+|+|+|||||||||++|.++||+||+||||+++|++|++|+..
T Consensus 87 AqaL~~~~LGrdwr~~~~~~~~~~~~~Il~~F~D~~~apFSIH~iv~~G~~~gk~~GeWfGPs~va~~lk~L~~~----- 161 (396)
T 2cy7_A 87 AQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVF----- 161 (396)
T ss_dssp HHHHHHHHTCTTCCCCTTSCCCHHHHHHHHTTSSSTTSTTCHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHhcccccccccccCcHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCcccccCHHHHHHHHHHHhhc-----
Confidence 999999999999999877767778999999999999999999999999999999999999999999999999752
Q ss_pred cCCCCCCCeEEEEeeCCCCCCCCCCceeecccccccccc--------------------ccC------CCCCCccEEEEE
Q 013409 219 GLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSV--------------------FSK------GQADWTPILLLV 272 (443)
Q Consensus 219 ~~~~~~~~l~v~v~s~~~dge~~~~~vv~~dd~~~~c~~--------------------~~~------~~~~w~plLlLI 272 (443)
..+..++|||++++ +|+.+|+.+.|.. ++. ....|+|+||||
T Consensus 162 ---~~~~~l~v~va~D~---------~v~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~plLlli 229 (396)
T 2cy7_A 162 ---DTWSSLAVHIAMDN---------TVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLI 229 (396)
T ss_dssp ---CTTTCCEEEECCTT---------EEEHHHHHHHHBSSCCC---------------------------CCBCCEEEEE
T ss_pred ---ccccCceEEEecCC---------ceeHHHHHHHhhcccccccccccccccccccccccccccccccccCCcceEEEE
Confidence 23446899998753 6777887666542 111 124699999999
Q ss_pred eeeecCCCCCcchHHHHHHhhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcccccccCCCCCCCCCCccccCC-c
Q 013409 273 PLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDV-I 351 (443)
Q Consensus 273 PlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~S~YFvG~q~d~LiYLDPH~~Q~av~~~~~~~~~~~~SyHc~~-~ 351 (443)
|+|||+|+|||+|+++||++|++|||+|||||||++|+||||+|+++|||||||+||+|++...... ...+||||.. +
T Consensus 230 plRLGld~iNp~Y~~~Lk~~l~~pqsvGIiGGkP~~s~YfvG~q~d~liYLDPH~~Q~a~~~~~~~~-~~~~s~hc~~~~ 308 (396)
T 2cy7_A 230 PLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCF-IPDESFHCQHPP 308 (396)
T ss_dssp EEECCSSSCCGGGHHHHHHHTSSTTEEEEEECSTTCCEEEEEEETTEEEEECCCSEEECCC---CCC-CCCGGGBCCSCC
T ss_pred EEeecCCcCCHHHHHHHHHHhCCcccceEecCccCceEEEEEEeCCEEEeeCCCccccccccccccc-CCCcceeecCcc
Confidence 9999999999999999999999999999999999999999999999999999999999998654332 2457999997 5
Q ss_pred ccccccccCCccEEEEEeCChhhHHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCcCCCCCC
Q 013409 352 RHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGG 416 (443)
Q Consensus 352 r~m~i~~lDPSmalGFyc~~~~Df~df~~~i~~l~~~~~~~pLF~v~~~~p~~~~~~d~~~~~~~ 416 (443)
++|++++|||||+|||||+|++||++||++++++....+++|||+|++++|+++.++|++....+
T Consensus 309 ~~m~~~~mDPS~~lGFyc~~~~Df~d~~~~~~~~~~~~~~~plF~v~~~~p~~~~~~~~~~~~~~ 373 (396)
T 2cy7_A 309 CRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPSHLACPDVLNLSLD 373 (396)
T ss_dssp EEEEGGGSCSEEEEEEEESSHHHHHHHHHHHHHHHHC----CCSEEESCCC------CCCCCCCC
T ss_pred cccchhhcCCceEEEEEECCHHHHHHHHHHHHHHhccCCCCceEEeeccCCCcCCCCccccCCCc
Confidence 89999999999999999999999999999999998777789999999999999988887765553
No 2
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22
Probab=100.00 E-value=4.9e-114 Score=875.19 Aligned_cols=316 Identities=34% Similarity=0.682 Sum_probs=283.0
Q ss_pred CCCCCCCCCcEEEeCceecCCccccccccCCCcchHHHHHhccccEEEeecCCCccCCCCcccccCCcceeccchhHHHH
Q 013409 60 RTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVA 139 (443)
Q Consensus 60 ~~~~~~~~~~vwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~df~SriWfTYR~~F~pI~~s~~TSD~GWGCMLRsgQMLLA 139 (443)
+++++.+++||||||++|+..++ .++|++||+||||||||+|||||+++++|||+||||||||||||||
T Consensus 15 ~~~~~~~~~pv~iLG~~y~~~~~-----------~~~fl~d~~SriWfTYR~~F~~I~~s~~TSD~GWGCMlRsgQMlLA 83 (355)
T 2p82_A 15 YFQGPDTDELVWILGKQHLLKTE-----------KSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLA 83 (355)
T ss_dssp -------CCEEEETTEEEETTTT-----------HHHHHHHHHTSBCCCEEESSCCTTTTSCSCCTTTCHHHHHHHHHHH
T ss_pred ccccCCCCCeEEEecceecCCcC-----------HHHHHHHhhhcEEEEecCCCccCCCCCccCCCccceeeehhHHHHH
Confidence 45677899999999999998754 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCcCCCCCCCcHHHHHHhhhcCCCCCCCchhhHHHHHHHHcCCCCccccCchHHHHHHHHHHHHHhhhcc
Q 013409 140 QALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG 219 (443)
Q Consensus 140 qAL~~~~LGrdwr~~~~~~~~~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~pGeWfGPs~~a~~i~~L~~~~~~~~~ 219 (443)
|||++|+|||+|||...+..+++|.+||+||+|+|+|||||||||++|.++||+|||||||+++|++|++|++.
T Consensus 84 qaL~~~~LGr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~GeWfGPs~va~~lk~L~~~------ 157 (355)
T 2p82_A 84 QALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALF------ 157 (355)
T ss_dssp HHHHHHHTCTTCCTTSCSSCCHHHHHHHHTTSSSTTSTTSHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTT------
T ss_pred HHHHHHhcCccccccccccccHHHHHHHHhcCCCCCCCccHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhc------
Confidence 99999999999999877777789999999999999999999999999999999999999999999999999863
Q ss_pred CCCCCCCeEEEEeeCCCCCCCCCCceeeccccccccccccC------------------------CCCCCccEEEEEeee
Q 013409 220 LGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSK------------------------GQADWTPILLLVPLV 275 (443)
Q Consensus 220 ~~~~~~~l~v~v~s~~~dge~~~~~vv~~dd~~~~c~~~~~------------------------~~~~w~plLlLIPlR 275 (443)
.++.+++|||+++ .+++++|+.+.|..... ....|+|||||||+|
T Consensus 158 --~~~~~l~v~va~D---------~~v~~~di~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plLlliplR 226 (355)
T 2p82_A 158 --DEWNSLAVYVSMD---------NTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSAWKPLLLIVPLR 226 (355)
T ss_dssp --CTTTCCEEEECBT---------TEEEHHHHHHHHEECCSCC----------------------CCCEECCEEEEEEEE
T ss_pred --ccccCceEEEecC---------CcEeHHHHHHHhhcccccccccccccccccccccccccccccccCCceEEEEEEee
Confidence 2345789999875 37888998887753211 012699999999999
Q ss_pred ecCCCCCcchHHHHHHhhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcccccccCCCCCCCCCCccccCC-cccc
Q 013409 276 LGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDV-IRHI 354 (443)
Q Consensus 276 LGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~S~YFvG~q~d~LiYLDPH~~Q~av~~~~~~~~~~~~SyHc~~-~r~m 354 (443)
||+|+|||+|+++||++|++|||+|||||||++|+||||+|+|+|||||||+||+|++..+... .+.+||||+. +++|
T Consensus 227 LGld~in~~Y~~~Lk~~l~~pqsvGIiGGkP~~s~YfvG~q~d~l~YLDPH~~Q~a~~~~~~~~-~~~~sfhc~~~~~~m 305 (355)
T 2p82_A 227 LGINQINPVYVDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGT-VNDQTFHCLQSPQRM 305 (355)
T ss_dssp CCSSSCCGGGHHHHHHHHHSTTEEEEEEEETTEEEEEEEEETTEEEEECCCSEEECCCBCTTSC-BCCGGGBCCSSCEEE
T ss_pred cCCCcCCHHHHHHHHHHhCccccceEecCCCCceEEEEEEcCCEEEEeCCCCCcccccccccCc-CCCCceeeCCCcCcC
Confidence 9999999999999999999999999999999999999999999999999999999998765433 2468999999 9999
Q ss_pred cccccCCccEEEEEeCChhhHHHHHHHHHHHHhhcCCCCcEEEecCCCCCC
Q 013409 355 HLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPV 405 (443)
Q Consensus 355 ~i~~lDPSmalGFyc~~~~Df~df~~~i~~l~~~~~~~pLF~v~~~~p~~~ 405 (443)
++++|||||+|||||+|++||++||+++++++.. .++|||||++++|+++
T Consensus 306 ~~~~lDPS~~lGF~c~~~~df~d~~~~i~~~~~~-~~~plF~v~~~~p~~~ 355 (355)
T 2p82_A 306 NILNLDPSVALGFFCKEEKDFDNWCSLVQKEILK-ENLRMFELVQKHPSHW 355 (355)
T ss_dssp EGGGSCSEEEEEEEESSHHHHHHHHHHHHHHTTT-SSSCSSEEESSCCCCC
T ss_pred chhhcCcceEEEEEECCHHHHHHHHHHHHHHhcc-CCCCcEEEeccCCCCC
Confidence 9999999999999999999999999999998877 8899999999999864
No 3
>3oqc_A UFSP2, UFM1-specific protease 2; DPH motif Cys protease, hydrolase; 2.60A {Mus musculus}
Probab=98.00 E-value=3.4e-05 Score=80.08 Aligned_cols=46 Identities=26% Similarity=0.225 Sum_probs=33.2
Q ss_pred hHHHHHHhhCCCceeEEecCCCCceEEEEEEecC------ceEeeCCCCcccc
Q 013409 285 YIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEE------SAIYLDPHDVQPV 331 (443)
Q Consensus 285 Y~~~Lk~~f~lpqsvGIiGGkP~~S~YFvG~q~d------~LiYLDPH~~Q~a 331 (443)
....|.+-|+-..+-=|+|| ..+|+=++|+.-+ +|+.|||||+-+.
T Consensus 394 l~~~L~~hF~~~GtPImiGG-~~~S~TIlGVe~~~~tG~~~lLIlDPHytg~~ 445 (481)
T 3oqc_A 394 QGRELANHFQNVGTPVMVGG-GVLAHTILGVAWNETTGQIKFLILDPHYTGAE 445 (481)
T ss_dssp GHHHHHHHHTTTCCCEEEEE-TTEEEEEEEEEECTTTCCEEEEEECTTCCSCS
T ss_pred HHHHHHHHHhccCCCEEecC-CCCCceEEEEEEecCCCeEEEEEECCCCCChH
Confidence 34567777765444556666 6799999999732 5789999998744
No 4
>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}
Probab=97.88 E-value=5.2e-05 Score=72.20 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.7
Q ss_pred cCCCCceEEEEEEec-----CceEeeCCCCcc
Q 013409 303 GGKPGASTYIVGVQE-----ESAIYLDPHDVQ 329 (443)
Q Consensus 303 GGkP~~S~YFvG~q~-----d~LiYLDPH~~Q 329 (443)
||...||.=+||+.. -+|+.||||++-
T Consensus 144 G~~~ghS~tIvGve~~~~g~~~lLIlDPhy~~ 175 (218)
T 2z84_A 144 GDADAQSKALLGICEGPGSEVYVLILDPHYWG 175 (218)
T ss_dssp CTTTSCCEEEEEEEECTTCCEEEEEECCCCCS
T ss_pred CCcccccceEEeEEecCCCcEEEEEECCCcCC
Confidence 577899999999962 269999999887
No 5
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=20.00 E-value=1.1e+02 Score=26.33 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=21.7
Q ss_pred EEEEEeCChhhHHHHHHHHHHHHhh
Q 013409 364 AIGFYCRDKDDFDDFCARASKLAEE 388 (443)
Q Consensus 364 alGFyc~~~~Df~df~~~i~~l~~~ 388 (443)
.+-|+|++.+|++.|...+.++++.
T Consensus 103 ~i~v~~~s~eE~~~Wl~~L~~~i~~ 127 (132)
T 1v61_A 103 RIVVHCNNNQDFQEWMEQLNRLTKS 127 (132)
T ss_dssp EEEECCCCSHHHHHHHHHHHHHHTT
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4778999999999999999887654
No 6
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=16.71 E-value=2.2e+02 Score=21.12 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=37.6
Q ss_pred HHHHHHhhhcCCCCCCCchhhHHHHHHHHcCCCCccccCchHHHHHHHHHHHH
Q 013409 161 REYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARC 213 (443)
Q Consensus 161 ~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~pGeWfGPs~~a~~i~~L~~~ 213 (443)
+....||.++...+..|+|+..|++.-...+.. .+++|+-+.|+.|.+.
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~----is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEE----IGLATVYRVLNQFDDA 65 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCC----CCHhhHHHHHHHHHHC
Confidence 345789999987643589999999877554432 4789999999999874
No 7
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=15.21 E-value=33 Score=29.63 Aligned_cols=8 Identities=38% Similarity=1.145 Sum_probs=6.5
Q ss_pred Ccceeccc
Q 013409 126 GWGCMLRS 133 (443)
Q Consensus 126 GWGCMLRs 133 (443)
|||||+--
T Consensus 117 GWGt~~~~ 124 (132)
T 1nxi_A 117 GWGTYYEG 124 (132)
T ss_dssp EEEECCCC
T ss_pred CcceEEEc
Confidence 99999754
No 8
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=13.26 E-value=1.4e+02 Score=26.70 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHcCCCCccc-cCchHHHH
Q 013409 179 SIHNLLQAGKAYGLAAGSW-VGPYAMCR 205 (443)
Q Consensus 179 SIH~iv~~G~~~gk~pGeW-fGPs~~a~ 205 (443)
-||+++..-+.-|+-|.+| |-|.+++.
T Consensus 123 kI~RL~rYYk~~~~LP~~WkY~~~tA~~ 150 (153)
T 2xzm_O 123 RIHRLSRYYKLNQKLPPKWKYNAQTASA 150 (153)
T ss_dssp HHHHHHHHHHHTTSSCTTCCCSSHHHHH
T ss_pred HHHHHHHHHHhcCcCCCCCcCCHHHHHH
Confidence 4899999999999999999 88887764
No 9
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=12.93 E-value=1.4e+02 Score=26.65 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHcCCCCccc-cCchHHHH
Q 013409 179 SIHNLLQAGKAYGLAAGSW-VGPYAMCR 205 (443)
Q Consensus 179 SIH~iv~~G~~~gk~pGeW-fGPs~~a~ 205 (443)
-||+++..-+.-|+-|-+| |-|.++..
T Consensus 121 kI~RL~rYYk~~~~LP~~WkY~~~tA~~ 148 (151)
T 3u5c_N 121 RIHRLARYYRTVAVLPPNWKYESATASA 148 (151)
T ss_dssp HHHHHHHHHHHTTSSCTTCCCCHHHHHH
T ss_pred HHHHHHHHHHhcCcCCCCCcCCHHHHHH
Confidence 4899999888999999999 88888764
No 10
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=12.53 E-value=2.6e+02 Score=20.95 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=19.8
Q ss_pred CccEEEEEeCChhhHHHHHHHHHH
Q 013409 361 PSLAIGFYCRDKDDFDDFCARASK 384 (443)
Q Consensus 361 PSmalGFyc~~~~Df~df~~~i~~ 384 (443)
|.=.+-|.+.|++|.++|...|++
T Consensus 68 ~~r~~~l~A~s~~e~~~Wi~aLq~ 91 (94)
T 2rsg_A 68 NDSVWYLRAQDPDHRQQWIDAIEQ 91 (94)
T ss_dssp TTEEEEEECCSSCCTHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHh
Confidence 555677889999999999988864
Done!