Query 013411
Match_columns 443
No_of_seqs 476 out of 1288
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 03:35:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2814 AraJ Arabinose efflux 100.0 4.8E-38 1.1E-42 280.8 36.2 368 7-425 15-388 (394)
2 PRK03545 putative arabinose tr 100.0 2.2E-37 4.8E-42 290.6 37.0 360 11-423 15-380 (390)
3 PRK09705 cynX putative cyanate 100.0 2E-36 4.4E-41 283.6 37.4 349 22-423 26-381 (393)
4 TIGR02332 HpaX 4-hydroxyphenyl 100.0 1.6E-37 3.5E-42 292.5 28.4 374 7-394 10-399 (412)
5 PRK11551 putative 3-hydroxyphe 100.0 1.3E-36 2.7E-41 287.5 32.9 346 11-391 21-371 (406)
6 PRK11663 regulatory protein Uh 100.0 2.6E-36 5.6E-41 286.7 33.5 386 11-424 29-425 (434)
7 PRK09556 uhpT sugar phosphate 100.0 2.7E-36 6E-41 289.3 31.8 360 11-389 35-411 (467)
8 TIGR01299 synapt_SV2 synaptic 100.0 3.6E-36 7.9E-41 294.8 32.1 384 15-422 177-733 (742)
9 PRK10489 enterobactin exporter 100.0 1.2E-35 2.6E-40 281.4 34.5 352 3-392 15-376 (417)
10 COG2271 UhpC Sugar phosphate p 100.0 3E-36 6.5E-41 265.2 27.6 364 9-391 29-410 (448)
11 TIGR00903 2A0129 major facilit 100.0 9.2E-36 2E-40 274.8 31.8 351 17-420 3-362 (368)
12 PRK10642 proline/glycine betai 100.0 6.3E-35 1.4E-39 281.2 38.9 360 8-391 19-405 (490)
13 TIGR00900 2A0121 H+ Antiporter 100.0 7.2E-36 1.6E-40 278.5 31.4 350 8-391 2-364 (365)
14 TIGR00893 2A0114 d-galactonate 100.0 7.3E-36 1.6E-40 281.6 29.9 379 16-419 5-395 (399)
15 PRK14995 methyl viologen resis 100.0 2.4E-35 5.1E-40 284.3 31.9 370 6-390 7-413 (495)
16 PRK11646 multidrug resistance 100.0 2.1E-34 4.6E-39 270.3 36.3 370 8-421 13-386 (400)
17 PRK10091 MFS transport protein 100.0 2.1E-34 4.5E-39 269.4 36.0 345 5-394 3-354 (382)
18 PRK10077 xylE D-xylose transpo 100.0 4.8E-35 1E-39 282.8 32.2 402 11-423 18-457 (479)
19 PRK03633 putative MFS family t 100.0 1.9E-34 4.1E-39 269.8 34.8 367 1-422 1-371 (381)
20 TIGR00891 2A0112 putative sial 100.0 4.2E-35 9.1E-40 277.3 30.1 371 8-394 15-394 (405)
21 PRK05122 major facilitator sup 100.0 2.8E-34 6E-39 270.7 35.4 368 2-423 12-389 (399)
22 TIGR00887 2A0109 phosphate:H+ 100.0 6.3E-35 1.4E-39 282.3 31.5 416 9-438 20-498 (502)
23 PRK10213 nepI ribonucleoside t 100.0 5E-34 1.1E-38 267.2 36.4 328 20-391 35-367 (394)
24 PRK10406 alpha-ketoglutarate t 100.0 5E-34 1.1E-38 271.1 35.9 372 11-422 28-423 (432)
25 PRK10504 putative transporter; 100.0 4.1E-34 8.9E-39 275.4 34.6 372 6-392 11-417 (471)
26 PRK09952 shikimate transporter 100.0 1.3E-33 2.8E-38 268.2 37.4 380 8-422 25-432 (438)
27 TIGR00890 2A0111 Oxalate/Forma 100.0 2.9E-34 6.3E-39 268.8 31.9 333 21-391 19-358 (377)
28 KOG0569 Permease of the major 100.0 6.1E-34 1.3E-38 262.4 33.1 370 49-436 61-462 (485)
29 PRK12307 putative sialic acid 100.0 1.6E-34 3.4E-39 274.9 30.1 355 7-391 20-384 (426)
30 PRK15402 multidrug efflux syst 100.0 1.9E-33 4.2E-38 265.5 36.0 343 11-391 19-371 (406)
31 PRK11195 lysophospholipid tran 100.0 1.3E-33 2.8E-38 264.3 34.5 348 5-389 3-355 (393)
32 PRK11273 glpT sn-glycerol-3-ph 100.0 1.3E-33 2.7E-38 269.7 34.7 363 44-423 59-435 (452)
33 TIGR00899 2A0120 sugar efflux 100.0 3E-33 6.4E-38 261.8 36.6 361 11-420 3-371 (375)
34 PRK12382 putative transporter; 100.0 2.5E-33 5.4E-38 263.5 36.1 365 4-422 14-388 (392)
35 PF07690 MFS_1: Major Facilita 100.0 4.4E-35 9.5E-40 271.8 23.8 343 10-381 1-352 (352)
36 PRK09874 drug efflux system pr 100.0 2.2E-33 4.7E-38 265.8 35.4 379 4-424 13-399 (408)
37 TIGR00710 efflux_Bcr_CflA drug 100.0 2.6E-33 5.7E-38 263.2 35.7 345 3-386 3-357 (385)
38 PRK03699 putative transporter; 100.0 2.2E-33 4.9E-38 263.6 34.9 341 9-392 11-357 (394)
39 TIGR00711 efflux_EmrB drug res 100.0 5.3E-34 1.2E-38 276.1 31.4 369 7-390 4-410 (485)
40 COG2223 NarK Nitrate/nitrite t 100.0 1.3E-33 2.8E-38 249.2 29.3 375 5-425 14-403 (417)
41 TIGR00879 SP MFS transporter, 100.0 1.3E-33 2.9E-38 273.1 31.1 396 16-423 39-470 (481)
42 PRK10054 putative transporter; 100.0 3.3E-33 7.1E-38 261.8 31.9 349 3-391 5-360 (395)
43 PRK10473 multidrug efflux syst 100.0 2.8E-32 6.1E-37 256.4 38.2 344 5-392 3-351 (392)
44 PRK15403 multidrug efflux syst 100.0 1.7E-32 3.8E-37 258.3 36.4 341 12-390 23-373 (413)
45 TIGR00881 2A0104 phosphoglycer 100.0 7.5E-34 1.6E-38 266.2 26.7 359 14-391 4-373 (379)
46 PLN00028 nitrate transmembrane 100.0 2.5E-33 5.3E-38 268.6 30.3 370 11-423 42-433 (476)
47 TIGR00898 2A0119 cation transp 100.0 6.2E-33 1.3E-37 269.6 33.4 367 40-436 116-502 (505)
48 TIGR00892 2A0113 monocarboxyla 100.0 1.6E-33 3.5E-38 268.5 28.5 344 40-395 46-400 (455)
49 PRK15075 citrate-proton sympor 100.0 7E-33 1.5E-37 263.4 32.3 349 5-392 15-396 (434)
50 TIGR00897 2A0118 polyol permea 100.0 7.8E-32 1.7E-36 253.7 37.8 372 4-421 12-399 (402)
51 TIGR00894 2A0114euk Na(+)-depe 100.0 3.1E-33 6.7E-38 268.6 28.5 361 42-422 70-449 (465)
52 PRK15034 nitrate/nitrite trans 100.0 4.8E-32 1E-36 251.3 34.2 368 5-425 34-456 (462)
53 TIGR00712 glpT glycerol-3-phos 100.0 3.7E-32 7.9E-37 258.8 33.5 364 43-423 56-433 (438)
54 KOG2532 Permease of the major 100.0 5.1E-33 1.1E-37 259.7 26.4 369 40-425 65-449 (466)
55 TIGR00895 2A0115 benzoate tran 100.0 7.2E-33 1.6E-37 261.4 27.6 360 14-387 26-397 (398)
56 PRK10133 L-fucose transporter; 100.0 6.6E-32 1.4E-36 255.5 34.1 344 9-391 30-408 (438)
57 TIGR00902 2A0127 phenyl propri 100.0 1.2E-31 2.5E-36 250.8 34.7 360 6-418 5-374 (382)
58 PF05977 MFS_3: Transmembrane 100.0 2.1E-31 4.6E-36 253.2 36.8 379 3-422 8-393 (524)
59 PRK11652 emrD multidrug resist 100.0 2.3E-31 5E-36 250.4 36.8 349 1-390 1-360 (394)
60 PRK15011 sugar efflux transpor 100.0 3.3E-31 7.1E-36 248.7 37.2 366 6-422 16-390 (393)
61 PRK03893 putative sialic acid 100.0 3.9E-32 8.6E-37 263.6 30.1 371 7-391 22-429 (496)
62 PRK11043 putative transporter; 100.0 3.3E-31 7.1E-36 250.0 35.4 336 11-390 12-357 (401)
63 PRK11102 bicyclomycin/multidru 100.0 2.3E-31 5E-36 249.1 34.2 329 18-383 4-342 (377)
64 cd06174 MFS The Major Facilita 100.0 4.8E-31 1E-35 244.6 33.5 340 9-419 3-348 (352)
65 TIGR00885 fucP L-fucose:H+ sym 100.0 3.8E-31 8.1E-36 248.2 32.6 347 7-391 5-382 (410)
66 PRK09528 lacY galactoside perm 100.0 2E-31 4.3E-36 252.7 31.1 385 2-424 7-404 (420)
67 TIGR00896 CynX cyanate transpo 100.0 5.4E-31 1.2E-35 244.3 31.5 332 19-395 14-353 (355)
68 TIGR00883 2A0106 metabolite-pr 100.0 1.4E-30 3E-35 245.4 33.1 350 16-392 4-377 (394)
69 PRK11010 ampG muropeptide tran 100.0 7.5E-30 1.6E-34 244.9 38.4 377 4-424 11-404 (491)
70 TIGR00886 2A0108 nitrite extru 100.0 3.1E-31 6.7E-36 247.3 27.2 343 6-376 2-365 (366)
71 KOG1330 Sugar transporter/spin 100.0 6.2E-33 1.3E-37 246.7 12.8 362 5-395 33-417 (493)
72 TIGR00889 2A0110 nucleoside tr 100.0 5.6E-30 1.2E-34 241.3 33.2 373 9-425 6-404 (418)
73 PRK11128 putative 3-phenylprop 100.0 1.3E-29 2.7E-34 237.2 34.0 339 9-391 8-356 (382)
74 KOG2615 Permease of the major 100.0 1E-30 2.2E-35 226.1 23.6 355 22-391 42-415 (451)
75 PRK08633 2-acyl-glycerophospho 100.0 1.9E-29 4.2E-34 268.5 35.1 359 3-389 7-383 (1146)
76 PRK06814 acylglycerophosphoeth 100.0 1.6E-29 3.5E-34 268.1 34.3 360 3-390 9-396 (1140)
77 TIGR00882 2A0105 oligosacchari 100.0 5.4E-29 1.2E-33 234.3 33.7 376 5-418 2-390 (396)
78 TIGR00901 2A0125 AmpG-related 100.0 2.2E-29 4.8E-34 233.7 28.4 317 22-374 5-355 (356)
79 PRK11902 ampG muropeptide tran 100.0 4.4E-28 9.4E-33 228.4 37.2 364 12-423 6-390 (402)
80 KOG3764 Vesicular amine transp 100.0 1.7E-29 3.7E-34 219.9 19.0 351 8-391 24-430 (464)
81 TIGR00924 yjdL_sub1_fam amino 100.0 2.1E-27 4.5E-32 226.9 34.7 374 2-390 7-443 (475)
82 TIGR00792 gph sugar (Glycoside 100.0 3.5E-28 7.5E-33 232.3 28.5 343 17-392 11-382 (437)
83 KOG2533 Permease of the major 100.0 1.2E-28 2.6E-33 230.8 23.7 333 39-381 72-421 (495)
84 KOG0254 Predicted transporter 100.0 6.9E-28 1.5E-32 233.2 29.6 368 48-436 89-491 (513)
85 COG0738 FucP Fucose permease [ 100.0 9.2E-27 2E-31 204.5 32.4 344 11-392 19-386 (422)
86 PF00083 Sugar_tr: Sugar (and 100.0 2.8E-34 6.1E-39 275.2 -16.6 405 11-437 6-445 (451)
87 KOG0252 Inorganic phosphate tr 100.0 3.6E-30 7.7E-35 228.1 9.8 405 12-423 48-498 (538)
88 PF03825 Nuc_H_symport: Nucleo 100.0 6.5E-26 1.4E-30 209.8 33.7 374 9-423 6-395 (400)
89 TIGR02718 sider_RhtX_FptX side 100.0 1.6E-25 3.4E-30 210.3 35.7 365 8-417 4-385 (390)
90 KOG2504 Monocarboxylate transp 100.0 1.7E-26 3.8E-31 218.6 27.9 353 40-400 73-460 (509)
91 TIGR01301 GPH_sucrose GPH fami 100.0 2E-25 4.4E-30 208.8 34.6 391 6-424 5-472 (477)
92 COG2807 CynX Cyanate permease 100.0 2.2E-25 4.9E-30 192.8 32.0 342 8-394 11-363 (395)
93 TIGR00805 oat sodium-independe 100.0 1.4E-27 3.1E-32 234.1 20.5 294 17-322 45-415 (633)
94 KOG0253 Synaptic vesicle trans 100.0 1.8E-26 3.9E-31 198.6 23.8 372 40-436 105-527 (528)
95 PRK10207 dipeptide/tripeptide 100.0 1.6E-25 3.6E-30 213.8 32.6 365 3-387 12-438 (489)
96 KOG0255 Synaptic vesicle trans 100.0 7.7E-26 1.7E-30 220.3 30.0 333 42-389 112-467 (521)
97 PF01306 LacY_symp: LacY proto 99.9 9.9E-25 2.1E-29 197.8 30.9 383 3-425 5-402 (412)
98 TIGR00806 rfc RFC reduced fola 99.9 9.2E-25 2E-29 198.8 26.9 335 42-383 55-408 (511)
99 PRK09584 tppB putative tripept 99.9 4.5E-24 9.8E-29 205.1 32.5 370 3-384 19-438 (500)
100 PF11700 ATG22: Vacuole efflux 99.9 2.5E-23 5.3E-28 196.2 35.6 350 47-423 69-468 (477)
101 PRK09669 putative symporter Ya 99.9 9.1E-23 2E-27 194.7 31.1 334 23-392 27-390 (444)
102 COG2270 Permeases of the major 99.9 5.8E-23 1.3E-27 182.0 26.8 376 19-422 29-428 (438)
103 KOG4686 Predicted sugar transp 99.9 4.1E-25 8.8E-30 183.6 12.3 360 40-426 71-446 (459)
104 PRK10429 melibiose:sodium symp 99.9 2E-22 4.4E-27 193.4 32.3 350 12-392 13-395 (473)
105 PF06609 TRI12: Fungal trichot 99.9 1.7E-22 3.7E-27 191.6 31.0 332 50-388 80-465 (599)
106 PF13347 MFS_2: MFS/sugar tran 99.9 8.1E-23 1.7E-27 194.1 27.7 324 42-392 31-386 (428)
107 TIGR00788 fbt folate/biopterin 99.9 2.3E-23 4.9E-28 198.6 23.8 388 13-423 34-446 (468)
108 PRK09848 glucuronide transport 99.9 7.3E-23 1.6E-27 195.7 26.9 345 12-392 15-390 (448)
109 PTZ00207 hypothetical protein; 99.9 6.7E-22 1.5E-26 188.9 28.6 371 40-420 54-549 (591)
110 KOG2816 Predicted transporter 99.9 1.3E-21 2.7E-26 182.4 28.1 371 8-397 21-399 (463)
111 TIGR01272 gluP glucose/galacto 99.9 6.5E-21 1.4E-25 171.8 27.9 259 104-391 10-291 (310)
112 PRK15462 dipeptide/tripeptide 99.9 4.6E-20 1E-24 173.6 32.1 366 4-391 8-437 (493)
113 COG2211 MelB Na+/melibiose sym 99.9 5E-20 1.1E-24 168.8 29.2 348 14-392 21-398 (467)
114 PRK11462 putative transporter; 99.9 1.6E-19 3.5E-24 172.1 32.1 336 19-391 23-388 (460)
115 PF03209 PUCC: PUCC protein; 99.9 9.1E-19 2E-23 156.1 34.2 358 41-422 8-397 (403)
116 KOG2325 Predicted transporter/ 99.9 1E-19 2.2E-24 167.1 24.0 363 3-391 32-451 (488)
117 COG3104 PTR2 Dipeptide/tripept 99.8 3E-16 6.6E-21 142.8 27.3 369 2-385 18-451 (498)
118 KOG2563 Permease of the major 99.8 1.5E-16 3.2E-21 142.3 24.6 355 9-394 45-425 (480)
119 KOG3626 Organic anion transpor 99.8 2E-17 4.3E-22 158.3 20.3 346 40-391 124-650 (735)
120 PF03137 OATP: Organic Anion T 99.8 9.4E-20 2E-24 174.4 -0.0 348 40-390 30-514 (539)
121 PF03092 BT1: BT1 family; Int 99.7 6E-15 1.3E-19 139.0 22.1 373 40-426 17-416 (433)
122 PRK10054 putative transporter; 99.6 1.7E-13 3.6E-18 128.8 22.1 151 238-389 6-157 (395)
123 TIGR00880 2_A_01_02 Multidrug 99.6 2.7E-15 5.8E-20 119.3 8.1 133 54-190 4-140 (141)
124 PF05631 DUF791: Protein of un 99.6 4.2E-13 9.1E-18 118.3 22.1 270 11-319 40-322 (354)
125 TIGR00924 yjdL_sub1_fam amino 99.6 1.4E-13 3E-18 131.9 20.6 154 237-391 8-168 (475)
126 TIGR00889 2A0110 nucleoside tr 99.6 4.8E-14 1E-18 133.2 14.8 185 8-194 211-408 (418)
127 PRK15462 dipeptide/tripeptide 99.6 8.6E-13 1.9E-17 124.7 21.5 176 237-421 7-187 (493)
128 PRK09874 drug efflux system pr 99.5 1.6E-13 3.5E-18 130.0 14.8 170 14-191 228-401 (408)
129 PRK09528 lacY galactoside perm 99.5 9.6E-14 2.1E-18 131.8 12.0 159 27-193 245-408 (420)
130 PRK10642 proline/glycine betai 99.5 2.4E-13 5.3E-18 131.5 14.8 164 19-194 264-435 (490)
131 PF07690 MFS_1: Major Facilita 99.5 1.2E-12 2.6E-17 121.3 18.9 164 246-418 3-167 (352)
132 PRK11663 regulatory protein Uh 99.5 2.2E-12 4.7E-17 122.9 20.9 147 243-391 27-174 (434)
133 PRK11646 multidrug resistance 99.5 2.7E-12 5.8E-17 120.8 21.1 147 242-389 13-160 (400)
134 PF01770 Folate_carrier: Reduc 99.5 6E-11 1.3E-15 107.8 28.6 322 52-381 45-393 (412)
135 TIGR00900 2A0121 H+ Antiporter 99.5 2.4E-12 5.2E-17 119.9 19.8 146 244-391 4-155 (365)
136 COG2271 UhpC Sugar phosphate p 99.5 1.1E-12 2.3E-17 117.2 15.2 167 250-426 40-209 (448)
137 TIGR00710 efflux_Bcr_CflA drug 99.5 4.4E-12 9.4E-17 119.2 20.0 162 251-422 17-179 (385)
138 PRK10207 dipeptide/tripeptide 99.5 6E-12 1.3E-16 120.8 21.0 154 237-391 12-170 (489)
139 PRK10489 enterobactin exporter 99.5 3E-12 6.4E-17 121.6 18.2 156 234-391 12-173 (417)
140 PRK15011 sugar efflux transpor 99.5 9.5E-13 2.1E-17 123.8 14.5 158 20-190 231-392 (393)
141 TIGR00886 2A0108 nitrite extru 99.5 1.4E-11 3E-16 114.9 21.9 148 241-390 3-152 (366)
142 PRK11195 lysophospholipid tran 99.4 1E-11 2.2E-16 116.6 20.2 148 239-390 3-150 (393)
143 PRK10213 nepI ribonucleoside t 99.4 1.9E-11 4.2E-16 114.8 21.8 131 259-391 40-171 (394)
144 COG2814 AraJ Arabinose efflux 99.4 2.4E-11 5.3E-16 109.8 21.2 175 240-424 14-189 (394)
145 PRK09584 tppB putative tripept 99.4 1.8E-11 3.9E-16 118.2 21.7 155 236-391 18-177 (500)
146 PRK12382 putative transporter; 99.4 1.5E-11 3.2E-16 115.8 20.5 153 238-391 14-175 (392)
147 PRK05122 major facilitator sup 99.4 1.1E-11 2.3E-16 117.1 19.5 154 237-391 13-175 (399)
148 TIGR02332 HpaX 4-hydroxyphenyl 99.4 2E-11 4.3E-16 115.4 21.3 140 249-390 18-158 (412)
149 PRK10504 putative transporter; 99.4 1.6E-11 3.5E-16 118.5 21.0 174 239-422 10-184 (471)
150 PRK03545 putative arabinose tr 99.4 2E-11 4.4E-16 114.8 20.9 150 262-421 32-182 (390)
151 KOG0637 Sucrose transporter an 99.4 2.9E-12 6.3E-17 115.2 13.7 369 6-394 33-474 (498)
152 KOG3762 Predicted transporter 99.4 8E-12 1.7E-16 114.4 16.3 182 228-420 361-544 (618)
153 TIGR00892 2A0113 monocarboxyla 99.4 5.2E-13 1.1E-17 127.7 9.1 164 7-182 243-415 (455)
154 PRK10473 multidrug efflux syst 99.4 3.2E-11 7E-16 113.5 21.0 174 239-422 3-177 (392)
155 TIGR01299 synapt_SV2 synaptic 99.4 3.4E-11 7.4E-16 119.6 21.7 127 264-391 191-318 (742)
156 PLN00028 nitrate transmembrane 99.4 6.2E-11 1.4E-15 114.1 23.1 156 265-423 61-219 (476)
157 PRK03699 putative transporter; 99.4 3.8E-11 8.2E-16 113.1 21.2 147 242-390 10-157 (394)
158 TIGR00893 2A0114 d-galactonate 99.4 1E-11 2.2E-16 116.9 17.5 149 263-420 17-166 (399)
159 PRK10091 MFS transport protein 99.4 3.1E-11 6.8E-16 113.1 20.5 172 239-420 3-175 (382)
160 PRK14995 methyl viologen resis 99.4 3.5E-11 7.7E-16 116.6 21.4 173 241-423 8-182 (495)
161 TIGR00890 2A0111 Oxalate/Forma 99.4 1.1E-12 2.4E-17 122.7 10.7 136 43-180 235-374 (377)
162 PRK03633 putative MFS family t 99.4 2.5E-11 5.3E-16 113.8 19.7 151 238-390 5-156 (381)
163 cd06174 MFS The Major Facilita 99.4 2E-12 4.2E-17 119.8 11.9 166 8-184 178-348 (352)
164 PRK11043 putative transporter; 99.4 4.7E-11 1E-15 112.8 21.3 147 244-391 8-157 (401)
165 TIGR00891 2A0112 putative sial 99.4 2.6E-11 5.6E-16 114.8 19.6 149 241-391 14-163 (405)
166 TIGR00899 2A0120 sugar efflux 99.4 3.7E-12 8.1E-17 119.2 13.6 171 7-190 201-375 (375)
167 PRK11551 putative 3-hydroxyphe 99.4 3.6E-11 7.7E-16 113.9 20.2 143 246-390 22-165 (406)
168 TIGR00711 efflux_EmrB drug res 99.4 2.6E-11 5.7E-16 117.6 19.1 146 244-391 7-153 (485)
169 TIGR00897 2A0118 polyol permea 99.4 5.9E-11 1.3E-15 112.0 20.8 152 238-391 12-169 (402)
170 PRK11652 emrD multidrug resist 99.4 7.1E-11 1.5E-15 111.3 20.7 130 259-390 28-158 (394)
171 PF06963 FPN1: Ferroportin1 (F 99.4 9.2E-10 2E-14 102.0 27.2 365 4-383 1-411 (432)
172 TIGR00895 2A0115 benzoate tran 99.4 2.8E-11 6.1E-16 114.1 17.8 135 255-391 33-168 (398)
173 PRK15034 nitrate/nitrite trans 99.4 1.2E-10 2.6E-15 109.1 21.1 148 239-388 34-187 (462)
174 PRK15402 multidrug efflux syst 99.4 8.7E-11 1.9E-15 111.2 20.7 154 258-421 32-186 (406)
175 TIGR00902 2A0127 phenyl propri 99.4 8.7E-12 1.9E-16 116.8 13.5 163 5-181 205-372 (382)
176 PRK11102 bicyclomycin/multidru 99.4 6.7E-11 1.4E-15 110.8 18.9 153 258-420 10-163 (377)
177 TIGR00881 2A0104 phosphoglycer 99.4 1.7E-11 3.7E-16 114.8 14.9 137 252-390 8-146 (379)
178 KOG3098 Uncharacterized conser 99.4 1.2E-09 2.5E-14 101.1 26.2 308 54-387 56-411 (461)
179 TIGR00712 glpT glycerol-3-phos 99.3 1E-10 2.2E-15 111.7 20.0 152 258-419 46-202 (438)
180 PRK12307 putative sialic acid 99.3 1E-10 2.3E-15 111.4 19.2 146 243-390 22-168 (426)
181 PRK09705 cynX putative cyanate 99.3 2.9E-11 6.3E-16 113.6 14.6 177 7-196 207-389 (393)
182 PRK03893 putative sialic acid 99.3 1.3E-10 2.8E-15 113.1 19.5 148 241-390 22-170 (496)
183 TIGR00885 fucP L-fucose:H+ sym 99.3 3.4E-10 7.5E-15 106.7 21.4 148 241-390 5-156 (410)
184 PRK09556 uhpT sugar phosphate 99.3 9.9E-11 2.2E-15 112.7 17.5 131 258-390 48-184 (467)
185 PRK15403 multidrug efflux syst 99.3 4.3E-10 9.2E-15 106.4 21.3 147 266-421 42-189 (413)
186 PRK11273 glpT sn-glycerol-3-ph 99.3 4.2E-10 9.1E-15 107.9 20.9 120 261-383 51-176 (452)
187 TIGR00882 2A0105 oligosacchari 99.3 3.5E-10 7.6E-15 106.6 19.7 172 238-421 1-181 (396)
188 TIGR00879 SP MFS transporter, 99.3 2.2E-11 4.8E-16 117.9 11.4 150 43-193 314-475 (481)
189 PF05977 MFS_3: Transmembrane 99.3 7.2E-11 1.6E-15 113.3 14.6 167 5-182 218-388 (524)
190 TIGR00903 2A0129 major facilit 99.3 4.7E-10 1E-14 104.0 19.6 157 256-423 8-165 (368)
191 PRK09952 shikimate transporter 99.3 7.7E-11 1.7E-15 112.4 14.1 166 17-191 262-435 (438)
192 TIGR00806 rfc RFC reduced fola 99.3 8E-10 1.7E-14 102.0 19.9 130 257-388 43-174 (511)
193 PRK10133 L-fucose transporter; 99.3 1.5E-09 3.3E-14 103.2 22.6 145 242-388 29-177 (438)
194 PF02487 CLN3: CLN3 protein; 99.3 4.8E-09 1E-13 95.5 24.4 325 50-389 61-396 (402)
195 COG3104 PTR2 Dipeptide/tripept 99.2 2.9E-10 6.3E-15 104.2 16.1 181 237-426 19-209 (498)
196 KOG1330 Sugar transporter/spin 99.2 2.4E-11 5.2E-16 109.7 7.8 176 241-425 35-211 (493)
197 PRK10077 xylE D-xylose transpo 99.2 1.3E-10 2.7E-15 112.7 13.5 148 44-193 302-462 (479)
198 TIGR00883 2A0106 metabolite-pr 99.2 4E-11 8.6E-16 112.9 9.6 160 7-177 221-390 (394)
199 PF11700 ATG22: Vacuole efflux 99.2 2.2E-10 4.8E-15 108.7 14.4 179 3-193 279-472 (477)
200 TIGR00769 AAA ADP/ATP carrier 99.2 1.1E-07 2.4E-12 89.5 31.5 323 48-388 43-437 (472)
201 COG2223 NarK Nitrate/nitrite t 99.2 7.9E-10 1.7E-14 99.2 16.1 157 261-424 35-194 (417)
202 PRK11128 putative 3-phenylprop 99.2 2.7E-10 5.9E-15 106.8 14.1 160 7-180 207-371 (382)
203 PTZ00207 hypothetical protein; 99.2 4.4E-09 9.6E-14 101.6 21.2 128 257-388 45-179 (591)
204 KOG2615 Permease of the major 99.2 5.9E-10 1.3E-14 98.1 13.5 118 271-389 64-181 (451)
205 TIGR00805 oat sodium-independe 99.2 2.4E-10 5.3E-15 113.0 12.7 136 255-391 48-235 (633)
206 PRK10406 alpha-ketoglutarate t 99.2 3.9E-09 8.5E-14 100.7 20.0 139 248-388 31-184 (432)
207 PRK11010 ampG muropeptide tran 99.2 3.1E-09 6.8E-14 102.6 19.0 166 14-191 231-405 (491)
208 TIGR00880 2_A_01_02 Multidrug 99.1 7.4E-10 1.6E-14 87.6 11.9 131 283-422 6-137 (141)
209 PRK11902 ampG muropeptide tran 99.1 8.4E-09 1.8E-13 97.4 20.9 142 245-390 5-156 (402)
210 TIGR00894 2A0114euk Na(+)-depe 99.1 8.5E-10 1.8E-14 106.4 14.1 121 269-390 70-193 (465)
211 PRK08633 2-acyl-glycerophospho 99.1 4.6E-10 1E-14 120.5 13.3 162 7-179 234-401 (1146)
212 TIGR02718 sider_RhtX_FptX side 99.1 9.2E-10 2E-14 103.6 13.7 167 7-182 210-385 (390)
213 TIGR00898 2A0119 cation transp 99.1 6.2E-10 1.3E-14 108.6 12.5 136 55-193 362-499 (505)
214 TIGR00792 gph sugar (Glycoside 99.1 9E-10 2E-14 105.4 13.1 149 5-164 222-377 (437)
215 KOG3764 Vesicular amine transp 99.1 1E-09 2.2E-14 97.3 11.7 146 271-425 102-249 (464)
216 TIGR01301 GPH_sucrose GPH fami 99.1 1.2E-08 2.6E-13 96.5 19.5 184 241-426 6-221 (477)
217 PF03825 Nuc_H_symport: Nucleo 99.1 2.8E-09 6.1E-14 99.3 15.1 175 5-191 207-398 (400)
218 TIGR00896 CynX cyanate transpo 99.1 6.6E-09 1.4E-13 96.5 17.4 130 258-391 19-149 (355)
219 TIGR00887 2A0109 phosphate:H+ 99.1 1.5E-08 3.2E-13 98.7 20.3 117 272-389 53-176 (502)
220 TIGR00901 2A0125 AmpG-related 99.1 1.3E-08 2.8E-13 94.6 18.8 160 258-421 7-176 (356)
221 COG2270 Permeases of the major 99.1 1.1E-09 2.3E-14 98.4 10.5 177 3-191 250-431 (438)
222 PRK06814 acylglycerophosphoeth 99.1 1.3E-09 2.7E-14 116.8 13.0 165 4-179 224-413 (1140)
223 PRK15075 citrate-proton sympor 99.0 1.8E-08 3.9E-13 96.2 18.5 147 241-389 17-178 (434)
224 PRK09848 glucuronide transport 99.0 2.4E-09 5.2E-14 102.6 11.8 152 4-164 227-385 (448)
225 PF01306 LacY_symp: LacY proto 99.0 7.2E-09 1.6E-13 95.0 13.6 164 22-193 237-405 (412)
226 COG0738 FucP Fucose permease [ 99.0 5E-08 1.1E-12 87.3 17.5 141 249-390 22-166 (422)
227 KOG3810 Micronutrient transpor 99.0 6.1E-08 1.3E-12 84.4 16.4 356 60-426 54-424 (433)
228 PRK10429 melibiose:sodium symp 98.9 4.4E-08 9.6E-13 94.5 17.4 146 246-392 13-171 (473)
229 PF06609 TRI12: Fungal trichot 98.9 9.4E-08 2E-12 92.0 18.9 119 265-386 69-188 (599)
230 KOG0569 Permease of the major 98.9 2.9E-08 6.2E-13 93.0 14.2 153 43-196 300-462 (485)
231 KOG2504 Monocarboxylate transp 98.9 8.3E-09 1.8E-13 98.7 10.8 172 5-189 298-476 (509)
232 TIGR01272 gluP glucose/galacto 98.9 1.5E-08 3.4E-13 91.5 11.9 152 12-175 147-302 (310)
233 PF13347 MFS_2: MFS/sugar tran 98.9 2.2E-08 4.7E-13 95.4 13.5 150 3-164 223-381 (428)
234 KOG4332 Predicted sugar transp 98.9 2.3E-08 5E-13 83.8 10.9 317 12-370 44-386 (454)
235 PRK09669 putative symporter Ya 98.9 5.4E-08 1.2E-12 93.2 15.3 143 249-392 19-174 (444)
236 TIGR00926 2A1704 Peptide:H+ sy 98.9 9.3E-07 2E-11 87.2 23.4 141 43-184 18-178 (654)
237 PF06813 Nodulin-like: Nodulin 98.8 1.2E-06 2.6E-11 75.3 19.5 151 40-193 29-186 (250)
238 COG0477 ProP Permeases of the 98.8 1.4E-07 3E-12 85.5 14.8 162 10-179 7-176 (338)
239 TIGR00788 fbt folate/biopterin 98.8 1.6E-08 3.6E-13 96.9 8.5 120 41-164 281-410 (468)
240 KOG2532 Permease of the major 98.8 1.2E-07 2.5E-12 89.8 13.0 122 268-390 66-190 (466)
241 PRK11462 putative transporter; 98.7 1.2E-06 2.6E-11 84.1 18.1 146 247-393 17-175 (460)
242 KOG3574 Acetyl-CoA transporter 98.7 3.6E-06 7.9E-11 74.6 19.1 346 4-391 30-432 (510)
243 KOG4686 Predicted sugar transp 98.7 3.1E-07 6.7E-12 78.0 11.9 146 6-164 265-411 (459)
244 COG2211 MelB Na+/melibiose sym 98.7 1E-07 2.2E-12 88.5 9.9 152 3-163 234-392 (467)
245 KOG0254 Predicted transporter 98.6 1.9E-06 4.2E-11 84.0 17.8 111 276-388 90-201 (513)
246 KOG0255 Synaptic vesicle trans 98.6 2.9E-07 6.4E-12 90.1 11.9 122 268-391 111-233 (521)
247 PF06813 Nodulin-like: Nodulin 98.6 3.6E-06 7.7E-11 72.4 16.7 126 262-390 24-157 (250)
248 KOG2533 Permease of the major 98.6 1.7E-06 3.8E-11 82.2 15.3 153 268-423 74-227 (495)
249 PF13000 Acatn: Acetyl-coenzym 98.6 3.6E-05 7.7E-10 71.3 22.8 367 9-391 4-468 (544)
250 KOG0253 Synaptic vesicle trans 98.6 9.9E-08 2.1E-12 84.0 5.8 127 58-190 391-520 (528)
251 COG2807 CynX Cyanate permease 98.6 1.8E-06 4E-11 76.3 13.5 168 7-187 210-384 (395)
252 KOG3762 Predicted transporter 98.5 2.2E-07 4.9E-12 85.9 7.3 162 9-182 375-541 (618)
253 KOG2325 Predicted transporter/ 98.5 5E-06 1.1E-10 77.7 15.7 182 240-424 35-230 (488)
254 PF05631 DUF791: Protein of un 98.5 9.5E-05 2.1E-09 66.1 22.8 148 268-423 62-216 (354)
255 PF03209 PUCC: PUCC protein; 98.4 5.6E-06 1.2E-10 75.0 13.5 170 5-182 208-392 (403)
256 TIGR00926 2A1704 Peptide:H+ sy 98.4 2.3E-05 4.9E-10 77.6 18.4 168 254-423 2-182 (654)
257 KOG0252 Inorganic phosphate tr 98.4 7.9E-06 1.7E-10 74.6 13.8 116 272-388 81-204 (538)
258 PF12832 MFS_1_like: MFS_1 lik 98.4 6.2E-07 1.3E-11 61.7 5.1 71 9-87 4-74 (77)
259 PF03219 TLC: TLC ATP/ADP tran 98.4 0.0009 1.9E-08 63.8 27.4 246 50-312 60-355 (491)
260 PF06779 DUF1228: Protein of u 98.3 9.3E-07 2E-11 61.2 4.5 75 18-100 5-79 (85)
261 KOG2563 Permease of the major 98.3 1.4E-05 3.1E-10 72.8 13.1 126 263-390 68-202 (480)
262 PF00083 Sugar_tr: Sugar (and 98.2 6.4E-08 1.4E-12 93.0 -4.6 111 276-387 47-161 (451)
263 PF05978 UNC-93: Ion channel r 98.2 1.4E-05 3.1E-10 63.3 9.2 104 54-162 43-146 (156)
264 KOG3880 Predicted small molecu 98.2 1.4E-05 3E-10 68.8 9.5 361 7-389 14-403 (409)
265 COG3202 ATP/ADP translocase [E 98.2 0.0033 7.2E-08 58.5 25.3 256 49-319 62-365 (509)
266 KOG2816 Predicted transporter 98.1 7.5E-05 1.6E-09 70.7 14.8 131 284-425 71-201 (463)
267 TIGR00939 2a57 Equilibrative N 98.1 0.00072 1.6E-08 63.9 19.8 53 331-383 375-427 (437)
268 PF12832 MFS_1_like: MFS_1 lik 98.1 5.4E-05 1.2E-09 52.1 8.9 70 244-315 5-74 (77)
269 KOG1237 H+/oligopeptide sympor 97.9 0.003 6.4E-08 61.7 21.5 139 43-182 68-239 (571)
270 PF03092 BT1: BT1 family; Int 97.9 0.00064 1.4E-08 64.6 16.7 130 260-391 10-151 (433)
271 PF05978 UNC-93: Ion channel r 97.8 0.0018 3.9E-08 51.4 15.3 105 281-387 43-148 (156)
272 PF00854 PTR2: POT family; In 97.8 0.00055 1.2E-08 63.9 14.0 104 79-183 2-118 (372)
273 PF01770 Folate_carrier: Reduc 97.7 0.0077 1.7E-07 55.7 18.4 134 256-390 20-155 (412)
274 KOG1479 Nucleoside transporter 97.6 0.0071 1.5E-07 55.4 17.1 123 256-381 260-396 (406)
275 PF03137 OATP: Organic Anion T 97.5 1.4E-05 3.1E-10 77.4 -1.2 172 253-425 16-252 (539)
276 COG0477 ProP Permeases of the 97.4 0.013 2.9E-07 52.5 17.0 132 257-390 20-158 (338)
277 KOG3626 Organic anion transpor 97.2 0.0016 3.4E-08 64.2 9.0 188 238-426 95-346 (735)
278 PF06779 DUF1228: Protein of u 97.1 0.0062 1.4E-07 42.3 8.7 75 255-331 8-82 (85)
279 TIGR00769 AAA ADP/ATP carrier 97.1 0.12 2.5E-06 49.4 19.8 124 266-390 29-191 (472)
280 KOG0637 Sucrose transporter an 97.0 0.0016 3.5E-08 59.9 5.9 144 240-385 33-200 (498)
281 KOG3098 Uncharacterized conser 96.8 0.015 3.2E-07 54.8 11.3 151 6-162 241-409 (461)
282 PF07672 MFS_Mycoplasma: Mycop 96.8 0.1 2.2E-06 44.8 14.8 51 137-187 2-61 (267)
283 PF06963 FPN1: Ferroportin1 (F 96.6 0.68 1.5E-05 43.8 20.7 151 240-391 3-176 (432)
284 PRK03612 spermidine synthase; 96.6 0.041 8.8E-07 53.6 12.8 119 43-164 45-168 (521)
285 PRK03612 spermidine synthase; 96.6 0.52 1.1E-05 46.0 20.3 143 244-389 19-170 (521)
286 PF02487 CLN3: CLN3 protein; 96.4 0.018 3.8E-07 53.3 8.8 109 48-164 281-394 (402)
287 PF01733 Nucleoside_tran: Nucl 96.4 0.001 2.2E-08 60.1 0.6 53 331-383 251-303 (309)
288 KOG3574 Acetyl-CoA transporter 95.7 0.37 8.1E-06 43.9 12.9 140 239-384 31-189 (510)
289 PF00854 PTR2: POT family; In 95.6 0.19 4.1E-06 46.9 11.7 109 307-423 2-123 (372)
290 KOG4830 Predicted sugar transp 95.2 0.0079 1.7E-07 51.0 1.0 145 237-382 199-349 (412)
291 KOG2601 Iron transporter [Inor 94.8 0.27 5.8E-06 44.5 9.3 76 6-88 28-103 (503)
292 KOG3097 Predicted membrane pro 94.5 3.5 7.5E-05 37.0 16.3 69 62-135 72-140 (390)
293 TIGR00939 2a57 Equilibrative N 93.8 0.49 1.1E-05 45.0 9.7 148 7-162 271-429 (437)
294 PF07857 DUF1632: CEO family ( 93.8 3.4 7.4E-05 35.8 13.7 30 254-283 193-226 (254)
295 KOG4332 Predicted sugar transp 91.8 0.52 1.1E-05 40.7 6.0 125 265-391 62-194 (454)
296 KOG1237 H+/oligopeptide sympor 91.7 6.5 0.00014 38.9 14.3 147 243-390 41-220 (571)
297 KOG1479 Nucleoside transporter 90.7 1.8 3.8E-05 40.2 8.8 131 21-161 259-399 (406)
298 KOG2881 Predicted membrane pro 90.1 7.3 0.00016 33.4 11.0 26 294-319 258-283 (294)
299 PF03219 TLC: TLC ATP/ADP tran 89.2 22 0.00049 34.5 20.4 42 348-389 164-205 (491)
300 PF13000 Acatn: Acetyl-coenzym 89.1 3.8 8.3E-05 39.1 9.7 145 243-387 4-177 (544)
301 PF01733 Nucleoside_tran: Nucl 86.1 0.26 5.7E-06 44.6 0.4 150 7-162 145-305 (309)
302 COG5336 Uncharacterized protei 84.8 12 0.00027 27.1 8.0 34 359-392 37-70 (116)
303 KOG3880 Predicted small molecu 81.6 4.9 0.00011 35.8 6.1 74 87-164 328-401 (409)
304 COG5336 Uncharacterized protei 74.4 8.4 0.00018 27.9 4.5 41 46-86 40-81 (116)
305 KOG3097 Predicted membrane pro 74.3 26 0.00057 31.7 8.5 30 289-319 72-101 (390)
306 PF02990 EMP70: Endomembrane p 70.9 77 0.0017 31.2 12.0 24 281-305 303-326 (521)
307 PF07672 MFS_Mycoplasma: Mycop 68.4 51 0.0011 28.8 8.8 103 51-155 144-253 (267)
308 KOG2601 Iron transporter [Inor 66.6 1.1E+02 0.0025 28.5 12.6 71 244-315 32-102 (503)
309 KOG3810 Micronutrient transpor 57.3 20 0.00043 32.8 4.6 98 48-149 271-370 (433)
310 COG4262 Predicted spermidine s 48.6 1.1E+02 0.0024 28.2 7.7 173 1-189 6-192 (508)
311 KOG4830 Predicted sugar transp 45.2 57 0.0012 28.6 5.3 60 247-307 25-92 (412)
312 PRK15015 carbon starvation pro 43.0 3.7E+02 0.0081 27.2 23.6 104 58-169 11-116 (701)
313 TIGR02840 spore_YtaF putative 41.1 2.2E+02 0.0047 24.0 14.8 48 271-319 153-202 (206)
314 PF11947 DUF3464: Protein of u 40.7 1.3E+02 0.0028 23.9 6.2 35 345-379 111-145 (153)
315 PF02694 UPF0060: Uncharacteri 40.4 33 0.00072 25.0 2.7 50 50-99 56-105 (107)
316 COG3202 ATP/ADP translocase [E 34.5 4.5E+02 0.0097 25.7 19.7 124 266-390 49-210 (509)
317 PF01914 MarC: MarC family int 34.5 2.8E+02 0.0061 23.3 10.6 64 349-419 23-86 (203)
318 PF02694 UPF0060: Uncharacteri 34.3 96 0.0021 22.7 4.2 49 275-324 54-102 (107)
319 PRK02237 hypothetical protein; 34.1 58 0.0013 23.8 3.2 50 50-99 58-107 (109)
320 PRK11469 hypothetical protein; 33.3 2.8E+02 0.0061 23.0 16.7 53 271-323 130-182 (188)
321 COG1079 Uncharacterized ABC-ty 32.7 3.7E+02 0.0081 24.2 12.5 92 295-387 26-117 (304)
322 PRK02237 hypothetical protein; 30.6 1.7E+02 0.0037 21.5 5.0 48 276-324 57-104 (109)
323 PF08566 Pam17: Mitochondrial 30.6 2.5E+02 0.0054 22.8 6.4 17 225-241 24-40 (173)
324 PF07760 DUF1616: Protein of u 29.8 4.1E+02 0.0088 23.8 9.1 56 107-164 22-77 (287)
325 PF10183 ESSS: ESSS subunit of 27.6 98 0.0021 22.7 3.6 30 164-193 57-86 (105)
326 COG1268 BioY Uncharacterized c 27.3 93 0.002 25.6 3.7 21 57-77 91-111 (184)
327 TIGR02230 ATPase_gene1 F0F1-AT 27.2 2.4E+02 0.0052 20.5 5.3 33 59-91 53-86 (100)
328 PF12805 FUSC-like: FUSC-like 27.0 3.2E+02 0.0069 24.3 7.5 102 80-195 1-103 (284)
329 TIGR01666 YCCS hypothetical me 26.9 3.4E+02 0.0074 28.0 8.4 48 67-116 42-93 (704)
330 PF02554 CstA: Carbon starvati 26.2 5.4E+02 0.012 24.0 21.6 39 131-170 47-86 (376)
331 TIGR01667 YCCS_YHJK integral m 25.7 3.4E+02 0.0074 28.0 8.1 48 67-116 42-93 (701)
332 COG2836 Uncharacterized conser 24.7 4.5E+02 0.0097 22.5 15.1 45 271-316 160-207 (232)
333 COG2119 Predicted membrane pro 24.7 4E+02 0.0087 22.0 14.7 37 283-320 142-178 (190)
334 PF03773 DUF318: Predicted per 24.6 5.3E+02 0.011 23.3 12.8 50 118-170 65-114 (307)
335 PF01405 PsbT: Photosystem II 24.0 1.3E+02 0.0028 16.1 3.0 13 181-193 16-28 (29)
336 PF06781 UPF0233: Uncharacteri 24.0 2.7E+02 0.0058 19.7 5.6 20 273-292 60-79 (87)
337 PF11947 DUF3464: Protein of u 23.6 3.6E+02 0.0078 21.5 6.1 9 297-305 117-125 (153)
338 COG2233 UraA Xanthine/uracil p 22.9 7E+02 0.015 24.1 14.0 123 244-367 18-144 (451)
339 TIGR00814 stp serine transport 22.3 6.7E+02 0.015 23.7 18.1 34 135-168 2-35 (397)
340 PRK11875 psbT photosystem II r 21.0 1.6E+02 0.0034 16.0 3.3 13 182-194 17-29 (31)
341 PRK11017 codB cytosine permeas 20.9 7.2E+02 0.016 23.5 16.0 48 132-179 2-54 (404)
342 PF12273 RCR: Chitin synthesis 20.3 57 0.0012 25.0 1.2 29 167-195 1-29 (130)
343 PF11872 DUF3392: Protein of u 20.1 3.7E+02 0.008 19.8 7.6 36 235-270 45-80 (106)
No 1
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-38 Score=280.78 Aligned_cols=368 Identities=17% Similarity=0.176 Sum_probs=303.7
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHH
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT 86 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~ 86 (443)
++.+.++.|.......+..+.+|++.+| ++.|..+.|+..+.|.++..+++|+...+.||+.||++++..+.
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~d--------l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~ 86 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAAD--------LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA 86 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 4456677777888888999999999554 88999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh---
Q 013411 87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF--- 163 (443)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~--- 163 (443)
++.++.+++++++| |+.++++|++.|+ ..|..++...++..|..|+++|++++++...+.+++.++|.+++.+
T Consensus 87 lFi~~n~l~alAp~---f~~Ll~aR~~~g~-a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~ 162 (394)
T COG2814 87 LFIVSNLLSALAPS---FAVLLLARALAGL-AHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ 162 (394)
T ss_pred HHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999 9999999999999 9999999999999999999999999999999999998888776655
Q ss_pred -hchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhH
Q 013411 164 -ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFS 242 (443)
Q Consensus 164 -~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
+|||..|++.+.++++..+..+..+| |++.+ ++.+.+.++.++.+ ++|.++
T Consensus 163 ~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~-------------------------~~~~~~~~~~~~~l-~~p~v~ 214 (394)
T COG2814 163 LFGWRATFLAIAVLALLALLLLWKLLP--PSEIS-------------------------GSLPGPLRTLLRLL-RRPGVL 214 (394)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCC-------------------------CCCCcchhHHHHHh-cCchHH
Confidence 58999999999999999999989999 22221 11223444445555 678888
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 013411 243 QAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFL 322 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 322 (443)
...+..++.....+..++|+.+++++..|++....++.+..++++.+++. .++|++.|| +.++.+.....+..+....
T Consensus 215 ~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn-~~gGrl~dr-~~~~~l~~~~~l~a~~~l~ 292 (394)
T COG2814 215 LGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGN-LLGGRLADR-GPRRALIAALLLLALALLA 292 (394)
T ss_pred HHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHH-HHHhhhccc-cchhHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999999999 666899999 8888888887777777777
Q ss_pred HHhhcchh-HHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCcc
Q 013411 323 YSVAWSSW-VPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNF 400 (443)
Q Consensus 323 ~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 400 (443)
+.+..+.. .... ..+.++..............+.. ||.++.+.+++....++|..+|..++|.++|+++ +
T Consensus 293 l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~------ 364 (394)
T COG2814 293 LTFTGASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-Y------ 364 (394)
T ss_pred HHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-h------
Confidence 66655443 3333 23334444444455555556633 5899999999999999999999999999999942 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcC
Q 013411 401 PGFSIMCIGFVSMTAFIQSIMIRVA 425 (443)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
....++.+++.+.+..+.+...++
T Consensus 365 -~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 365 -AATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 335566677777777766655543
No 2
>PRK03545 putative arabinose transporter; Provisional
Probab=100.00 E-value=2.2e-37 Score=290.62 Aligned_cols=360 Identities=16% Similarity=0.177 Sum_probs=274.3
Q ss_pred HHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHH
Q 013411 11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII 90 (443)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i 90 (443)
.+..++.........+.+|.+ .+|++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l--------~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 86 (390)
T PRK03545 15 ALAAFIFNTTEFVPVGLLSDI--------AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA 86 (390)
T ss_pred HHHHHHHHhHHHHHHcchHHH--------HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 333444334444555667776 345788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh----hch
Q 013411 91 PLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF----IST 166 (443)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w 166 (443)
+.+.+++++| ++.+++.|+++|+ +.+...+...+++.|++|+++|++++++.+.+.++|.++||++++. .+|
T Consensus 87 ~~~~~~~~~~---~~~l~~~r~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw 162 (390)
T PRK03545 87 SHVLSALAWN---FTVLLISRIGIAF-AHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGW 162 (390)
T ss_pred HHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcH
Confidence 9999999999 9999999999999 8888889999999999999999999999999999999999988765 489
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHH
Q 013411 167 SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAI 246 (443)
Q Consensus 167 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (443)
|+.|++.++++++..+.....+||++++++ .+.++..+.+ ++|.++....
T Consensus 163 ~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~-~~~~~~~~~~ 212 (390)
T PRK03545 163 RTTFLAIGGGALITLLLLIKLLPLLPSEHS-----------------------------GSLKSLPLLF-RRPALVSLYL 212 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCc-----------------------------chHHHHHHHH-hCcHHHHHHH
Confidence 999999998887766666566676433211 0111222223 5566665555
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH-Hh
Q 013411 247 VAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY-SV 325 (443)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 325 (443)
..++..........+.++|+++.+|.++.+.+...+..+++.++++.+. +++.||+++|+... +..+..++...+ ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~-g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~ 290 (390)
T PRK03545 213 LTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLF-SRLGNRHPSGFLLI-AIALLLVCLLLLLPA 290 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHH-HHHhhccchhHHHH-HHHHHHHHHHHHHHH
Confidence 5555555555566778888888889999999999999999999999555 79999999876544 444444443333 33
Q ss_pred hcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhH
Q 013411 326 AWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFS 404 (443)
Q Consensus 326 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 404 (443)
.++.+.... ..+.+++.....+.....+.+..| +.+++++|+.+...++|..+||.+.|.+.|..+- ...
T Consensus 291 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~--------~~~ 361 (390)
T PRK03545 291 ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGL--------SSI 361 (390)
T ss_pred hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh--------hHH
Confidence 344443333 455577766666777788888877 6889999999999999999999999999998531 345
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 013411 405 IMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~ 423 (443)
+.+.+++.+++....+...
T Consensus 362 ~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 362 GYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 5666666666666665554
No 3
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=100.00 E-value=2e-36 Score=283.62 Aligned_cols=349 Identities=11% Similarity=0.081 Sum_probs=264.9
Q ss_pred cccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCC
Q 013411 22 SMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSR 101 (443)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~ 101 (443)
....|.+|.+ ++|++.|..+.|++.+.+.++..+++++.|+++||+|||+++..+..+++++.+.++++++
T Consensus 26 ~~~~~~lp~i--------~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~- 96 (393)
T PRK09705 26 TSVGPLLPQL--------RQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQ- 96 (393)
T ss_pred hccchhHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcc-
Confidence 5567788887 4458889999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh-----chhhHHHHHHHH
Q 013411 102 NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-----STSAAFQAATAG 176 (443)
Q Consensus 102 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-----~w~~~f~~~~~~ 176 (443)
++.+++.|+++|+ +.+...+...+++.|++| ++|+++++.+..+...|..+|+.++..+ +||+.+.+.++.
T Consensus 97 --~~~ll~~r~l~Gi-g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~ 172 (393)
T PRK09705 97 --SALLLSSALLGGV-GIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALP 172 (393)
T ss_pred --hHHHHHHHHHHHh-HHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999 989988889999999997 8899999999888877777777666542 799888766555
Q ss_pred HHHHHHHHHHhcc-CCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhh
Q 013411 177 SIISAVYMRIFLP-ESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLAD 255 (443)
Q Consensus 177 ~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (443)
.++..+ .++... +.|++++ ++ + .+.++ .+ ++++.+......++....+
T Consensus 173 ~~~~~~-~~~~~~~~~~~~~~-----------------------~~--~-~~~~~---~l-~~~~~~~l~~~~~~~~~~~ 221 (393)
T PRK09705 173 AVVALF-AWWWQSAREVASSH-----------------------KT--T-TTPVR---VV-FTPRAWTLGVYFGLINGGY 221 (393)
T ss_pred HHHHHH-HHHHHhcCCCcccc-----------------------CC--C-cCCcc---cc-cCHhHHHHHHHHHHHHHHH
Confidence 443332 222222 2111110 00 0 01111 12 3455565666666666777
Q ss_pred hhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 013411 256 AGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAA 335 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (443)
.....+.|.|+++ +|.+..+.+...+..+++.+++++ ..+++.||++||+....+..+..++...+...+........
T Consensus 222 ~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~-~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 299 (393)
T PRK09705 222 ASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGAL-LMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWA 299 (393)
T ss_pred HHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 7888899999987 699999999999999999999995 55899999999999888887777776655433322212223
Q ss_pred HHHHHhhhhhhhHHHHHHHhcCC-CCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHH
Q 013411 336 AVFSILSVFSHPCLRTIVSKQVA-SNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMT 414 (443)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (443)
.+.+++.+...+.......+..+ ++++|+..|+.+...+++..++|.+.|++.|..+++ ...+.+.+++.+.
T Consensus 300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~-------~~~~~~~~~~~~~ 372 (393)
T PRK09705 300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNY-------LMDWAFHALCVVG 372 (393)
T ss_pred HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------hHHHHHHHHHHHH
Confidence 44567777777777777667775 578999999999999999999999999999997543 3455555555555
Q ss_pred HHHHHHHhh
Q 013411 415 AFIQSIMIR 423 (443)
Q Consensus 415 ~~~~~~~~~ 423 (443)
.........
T Consensus 373 ~~~~~~~~~ 381 (393)
T PRK09705 373 LMIITLRFA 381 (393)
T ss_pred HHHHHHHhc
Confidence 555555555
No 4
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=100.00 E-value=1.6e-37 Score=292.51 Aligned_cols=374 Identities=13% Similarity=0.072 Sum_probs=267.9
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHH
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT 86 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~ 86 (443)
...+++..+++.++........|.+ ++|++++..+.|++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus 10 ~~~~~~~~~~~~~d~~~~~~~~~~l--------~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 81 (412)
T TIGR02332 10 IIFLFILFIFSFLDRINIGFAGLTM--------GKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMV 81 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhh--------HhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHH
Confidence 3344555566667777777676655 44688899999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh---
Q 013411 87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF--- 163 (443)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~--- 163 (443)
+.+++.+++++++| ++.+++.|+++|+ +.+...|...+++.|++|+++|++++++++.+.++|.++++.+++.
T Consensus 82 ~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 82 LWGIASTATMFATG---PESLYLLRILVGI-AEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999999 9999889999999999999999999999999999999999888764
Q ss_pred -------hchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchh-hh-hhhh-hhhhhhhhhcccCCchhHHHh
Q 013411 164 -------ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKA-EI-SASC-EESTKKLQVFKRLPSIDDMVH 233 (443)
Q Consensus 164 -------~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~ 233 (443)
.+||+.|++.++..++..++.++++||+|++.+..+..++... +. +.+. +.++.+++.++++...++.++
T Consensus 158 ~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (412)
T TIGR02332 158 LDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLR 237 (412)
T ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHH
Confidence 3899999999888877777777888998864321000000000 00 0000 000000000011111122233
Q ss_pred hhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-cCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchH-HHH
Q 013411 234 LLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAK-FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARL-LSF 311 (443)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 311 (443)
.++ ++.++...+..++.......+..++|.|+++. .|.++.+.+.......++..++.+ ..++++||+++|+. ...
T Consensus 238 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l-~~g~l~dr~~~r~~~~~~ 315 (412)
T TIGR02332 238 EIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMI-WWSRHSDRLKERKHHTAL 315 (412)
T ss_pred Hhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHH-HHHHHhcccCccHHHHHH
Confidence 332 45677777777777777888899999999873 467888889999999999999994 55899999997764 333
Q ss_pred HHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 312 GLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
......++..+.....+...... ..+.+.+.....+.......|.+|+++|+++.|+.+...++|++++|.+.|.+.|.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~ 395 (412)
T TIGR02332 316 PYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDA 395 (412)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccccc
Confidence 44344443322222222222221 11222222222334445556789999999999999999999999999999999998
Q ss_pred hhcC
Q 013411 391 FLSD 394 (443)
Q Consensus 391 ~~~~ 394 (443)
.+++
T Consensus 396 ~g~~ 399 (412)
T TIGR02332 396 TGSF 399 (412)
T ss_pred CCCC
Confidence 6543
No 5
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=100.00 E-value=1.3e-36 Score=287.48 Aligned_cols=346 Identities=17% Similarity=0.131 Sum_probs=268.4
Q ss_pred HHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHH
Q 013411 11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII 90 (443)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i 90 (443)
+...+++.++.....+..|.+.+ |++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 92 (406)
T PRK11551 21 FLVALLEGLDLQSAGVAAPRMAQ--------EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGL 92 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 44556666666667777777743 4778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----ch
Q 013411 91 PLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----ST 166 (443)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w 166 (443)
+.+++.++++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+ +|
T Consensus 93 ~~~~~~~~~~---~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 168 (406)
T PRK11551 93 FSLATAQAWD---FPSLLVARLLTGV-GLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW 168 (406)
T ss_pred HHHHHHHhcc---HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence 9999999998 9999999999999 88888899999999999999999999999999999999998887543 79
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHH
Q 013411 167 SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAI 246 (443)
Q Consensus 167 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (443)
|+.|++.+++.++..+....++||+++++++++. + ++++...+..++.. +.+.......
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------~---------~~~~~~~~~~~~~~-~~~~~~~~~~ 227 (406)
T PRK11551 169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA-----------G---------KQRAPVLRALFGEG-RATATLLLWI 227 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc-----------c---------hhhhhhHHHHhhhh-hhhHHHHHHH
Confidence 9999998877666666666778887654321000 0 00000011111100 1122223333
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhh
Q 013411 247 VAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVA 326 (443)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (443)
..++..........+.|.|+++ .|+++.+.+...+...++.+++.+ ..+++.||+++|+.+..+.....++...+...
T Consensus 228 ~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 305 (406)
T PRK11551 228 SYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSL-LIGALMDRLRPRRVVLLIYAGILASLAALAAA 305 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444555667788999887 599999999999999999999994 55899999999999888777766666666555
Q ss_pred cchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 327 WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 327 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
++.+.... .++.+++.....+...++..|.+|+++|+++.|+.+...++|..++|.+.|.+.++.
T Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 371 (406)
T PRK11551 306 PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG 371 (406)
T ss_pred CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence 55444333 444566666677888999999999999999999999999999999999999998864
No 6
>PRK11663 regulatory protein UhpC; Provisional
Probab=100.00 E-value=2.6e-36 Score=286.70 Aligned_cols=386 Identities=11% Similarity=0.069 Sum_probs=270.5
Q ss_pred HHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHH
Q 013411 11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII 90 (443)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i 90 (443)
++..+...+......+.+|.+. ++++.+..+.|++.+.+.++..+++++.|+++||+|||+++.++.++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~--------~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 29 YLGYALFYFTRKSFNAAMPEML--------ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHhhhhHHHhhHHHH--------HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence 4444555555556667777774 34788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----ch
Q 013411 91 PLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----ST 166 (443)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w 166 (443)
+.++++++++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+.+.++|..++|.+++.+ +|
T Consensus 101 ~~~~~~~~~~---~~~l~~~~~l~g~-~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 176 (434)
T PRK11663 101 INILFGFSSS---LWAFALLWVLNAF-FQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGW 176 (434)
T ss_pred HHHHHHHHhH---HHHHHHHHHHHHH-HHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 9999999999 9999999999998 88888899999999999999999999999999999999998877654 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHh-hhccChhhHHHH
Q 013411 167 SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVH-LLKSSPTFSQAA 245 (443)
Q Consensus 167 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 245 (443)
|+.|++.+++.++..+...+++||+|++.+..+. ++.++ +.+ +..++.++++.+.++.++ ...+++.++...
T Consensus 177 ~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (434)
T PRK11663 177 RYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSV-GEWRH----DAL--ELAQQQEGAGLSRKEILTKYVLLNPYIWLLS 249 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCc-ccccc----ccc--ccchhccccCCChhhhHHHHHhcChHHHHHH
Confidence 9999998887776655565678887653211000 00000 000 000000111123333322 233567777777
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccchHH-HHHHHHHHHHHHH
Q 013411 246 IVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV--GEARLL-SFGLLFGCVHMFL 322 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~-~~~~~~~~~~~~~ 322 (443)
...++..........++|.|+++.+|++..+.+...+...++..++.+ ..|++.||+ ++|+.. ........+....
T Consensus 250 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~ 328 (434)
T PRK11663 250 FSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGAL-VAGWGSDKLFNGNRGPMNLIFAAGILLSVGS 328 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH-HHhhhHHHhccCCccHHHHHHHHHHHHHHHH
Confidence 767776777777888999999888899999999999999999999994 558999998 333322 2211111111111
Q ss_pred HHh-hcchhHHHHHHHHHHhhhh--hhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCc
Q 013411 323 YSV-AWSSWVPYAAAVFSILSVF--SHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFN 399 (443)
Q Consensus 323 ~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 399 (443)
+.. ............++++... ..........|..|+++||++.|+.++..++|..++|.+.|++.|+.+ +
T Consensus 329 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~----- 402 (434)
T PRK11663 329 LWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-W----- 402 (434)
T ss_pred HHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-c-----
Confidence 111 1111111112222222222 222334567899999999999999999999999999999999999753 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhc
Q 013411 400 FPGFSIMCIGFVSMTAFIQSIMIRV 424 (443)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (443)
...+.+.+++.+++.+..+...|
T Consensus 403 --~~~f~~~~~~~~~~~~~~~~~~~ 425 (434)
T PRK11663 403 --TGFFVVISIAAGISALLLLPFLN 425 (434)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHh
Confidence 23555666666665555554443
No 7
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=100.00 E-value=2.7e-36 Score=289.27 Aligned_cols=360 Identities=13% Similarity=0.075 Sum_probs=259.8
Q ss_pred HHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHH
Q 013411 11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII 90 (443)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i 90 (443)
.+..++..++.....+..|.+. +|++++..+.|++.+++.+++.+++++.|+++||+|||+++..+.+++++
T Consensus 35 ~~~~~~~y~~r~~~~~~~~~i~--------~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 106 (467)
T PRK09556 35 FIGYLTMYLIRKNFKAAQNDMI--------STYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI 106 (467)
T ss_pred HHHHHHHHHHhcChhhhhHHHH--------HhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence 3334444556666777777773 45788899999999999999999999999999999999999988888877
Q ss_pred HHHHHHh-----ccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh-
Q 013411 91 PLAILAY-----SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI- 164 (443)
Q Consensus 91 ~~~~~~~-----~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~- 164 (443)
..+..++ +++ ++.+++.|+++|+ +.+...|...++++|++|+++|++++++.+.+.++|.++++.++...
T Consensus 107 ~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 107 CMLGFGASLGSGSVS---LGLMIALWALSGF-FQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred HHHHHHHHHhcccch---HHHHHHHHHHHHH-HHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence 7766554 577 9999999999999 98988999999999999999999999999999999999998876432
Q ss_pred ------chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHH-Hhhhcc
Q 013411 165 ------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDM-VHLLKS 237 (443)
Q Consensus 165 ------~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 237 (443)
+||..|.+.+++.++..++.+++.+|+|++.+..+..+.. + +...+ ++++.++++.+.++. .+...+
T Consensus 183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~-~---~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 256 (467)
T PRK09556 183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIF-G---EPISE--EDKETESTDMTKWQIFVEYVLK 256 (467)
T ss_pred HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcc-c---Cccch--hhhccccccCcHHHHHHHHHHc
Confidence 4888888888877776666666677766532211100000 0 00000 000000111112221 222336
Q ss_pred ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Q 013411 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC 317 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (443)
++.++...+..++......+...+.|.|+++.+|+++.+.+...+...++..++. +.+|+++||++||+.+........
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~g~r~~~~~~~~~~~ 335 (467)
T PRK09556 257 NPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGS-LLWGWLSDLANGRRALVACIALAL 335 (467)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCchHHHHHHHHH
Confidence 7888888888888877777888999999999899999999999988999999999 555899999999887665544433
Q ss_pred HHHHHHH--hhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHH-HHHHhHHhHHHHHH
Q 013411 318 VHMFLYS--VAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSF-ANLVSPLAFSPLTA 389 (443)
Q Consensus 318 ~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~ 389 (443)
++..... ...+.+.... .+++|.+.............|.+|++.+|++.|+.+...++ |..++|.+.|.+.|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 336 IIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 3322222 2223322222 33334332222223345677999999999999999999997 77999999999999
No 8
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=100.00 E-value=3.6e-36 Score=294.85 Aligned_cols=384 Identities=15% Similarity=0.167 Sum_probs=276.3
Q ss_pred HHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHH
Q 013411 15 FVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAI 94 (443)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~ 94 (443)
+...+......+.+|.+. .+++++..+.+++.+++.++.+++++++|+++||+|||+.++++.++.+++.++
T Consensus 177 ~~~g~d~~~is~ilp~i~--------~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll 248 (742)
T TIGR01299 177 MADGVEVFVVGFVLPSAE--------KDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFF 248 (742)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 333444445666667663 346778888999999999999999999999999999999999999999999999
Q ss_pred HHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh-----------
Q 013411 95 LAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF----------- 163 (443)
Q Consensus 95 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----------- 163 (443)
++++++ ++.++++|++.|+ +.+...++..+++.|++|+++|++.+++....+.+|.++++.++..
T Consensus 249 ~afa~s---~~~llv~R~l~G~-g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~ 324 (742)
T TIGR01299 249 SSFVQG---YGFFLFCRLLSGF-GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQM 324 (742)
T ss_pred HHHHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcc
Confidence 999999 9999999999999 9899999999999999999999999999999999999988876532
Q ss_pred ------hchhhHHHHHHHHHHHHHHHHHHhccCCCCcc-------ccccccccchhhhhh----hhh-------hhhhhh
Q 013411 164 ------ISTSAAFQAATAGSIISAVYMRIFLPESVRDE-------DLYTPILSSKAEISA----SCE-------ESTKKL 219 (443)
Q Consensus 164 ------~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~-------~~~~~~~~~~~~~~~----~~~-------~~~~~~ 219 (443)
.+||+.+++.++..++ .++..+++||+|++. ++.+.+++....... ..+ +.....
T Consensus 325 g~~~~~~gWR~l~~i~~lp~ll-~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~ 403 (742)
T TIGR01299 325 GSAYQFHSWRVFVIVCAFPCVF-AIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQE 403 (742)
T ss_pred ccccccccHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhh
Confidence 2589988887776655 445568899998752 112222222111100 000 000000
Q ss_pred ----hhcccCC----------------chhHHHhhhccC---hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH----c--
Q 013411 220 ----QVFKRLP----------------SIDDMVHLLKSS---PTFSQAAIVAFLSNLADAGLQGSMMYYLKAK----F-- 270 (443)
Q Consensus 220 ----~~~~~~~----------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-- 270 (443)
+.++... .+.+..+++ ++ ++...+.+..++..+.++++..|+|.++++. +
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf-~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~ 482 (742)
T TIGR01299 404 DELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCF-NPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAA 482 (742)
T ss_pred hhhhcccccccchhhcchhhhhhhhhhHHHHHHHHc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000000 011222222 22 2344566677888888999999999875431 0
Q ss_pred ---------------CcCh-------------------------------------------------------------
Q 013411 271 ---------------HFNK------------------------------------------------------------- 274 (443)
Q Consensus 271 ---------------g~~~------------------------------------------------------------- 274 (443)
+++.
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 562 (742)
T TIGR01299 483 LTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFE 562 (742)
T ss_pred hhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchh
Confidence 0000
Q ss_pred --------------------------------hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 013411 275 --------------------------------NQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFL 322 (443)
Q Consensus 275 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 322 (443)
........+.+++.+++. +++++++||+|||+++..+.++.+++.++
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~-il~g~L~Dr~GRr~~l~~~~~lsai~~ll 641 (742)
T TIGR01299 563 EYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGN-IVSALLMDKIGRLRMLAGSMVLSCISCFF 641 (742)
T ss_pred hhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 011233456668888888 45579999999999999999999999888
Q ss_pred HHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccc
Q 013411 323 YSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFP 401 (443)
Q Consensus 323 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 401 (443)
+.+..+....+. .++++++.+..++...++++|.+|++.|++++|+.+....+|.+++|.+.+.+.+.. .
T Consensus 642 ~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~---------~ 712 (742)
T TIGR01299 642 LSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT---------K 712 (742)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------h
Confidence 877765444333 445566667778889999999999999999999999999999999999999887752 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 013411 402 GFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~ 422 (443)
..++++.+++.+++.++....
T Consensus 713 ~~pf~i~a~~lll~~ll~~~L 733 (742)
T TIGR01299 713 AAPILFASAALACGGLLALKL 733 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 345666666666665555543
No 9
>PRK10489 enterobactin exporter EntS; Provisional
Probab=100.00 E-value=1.2e-35 Score=281.40 Aligned_cols=352 Identities=16% Similarity=0.144 Sum_probs=273.6
Q ss_pred CCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhH
Q 013411 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT 82 (443)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~ 82 (443)
+++....+++..++..++..+..+.+|.+.++ .+.+..+.|++.+.+.++..+++++.|+++||+|||+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~ 86 (417)
T PRK10489 15 THPAFRAVFIARFISIFGLGLLGVAVPVQIQM--------MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLIL 86 (417)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEE
Confidence 45666777788889999999999999988655 4567788999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHh-----ccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhh
Q 013411 83 VPITLSIIPLAILAY-----SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCG 157 (443)
Q Consensus 83 ~~~~~~~i~~~~~~~-----~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g 157 (443)
.+..+.+++....+. .++ ++.+++.|+++|+ +.+...+...+++.|++|+++|+++.++.+...++|..+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 162 (417)
T PRK10489 87 LARGTCGLGFIGLALNAFLPEPS---LLAIYLLGLWDGF-FGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVIS 162 (417)
T ss_pred ehHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhH
Confidence 988887777665442 345 8889999999999 8888888889999999999999999999999999999999
Q ss_pred hhhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHh
Q 013411 158 TISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVH 233 (443)
Q Consensus 158 ~~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (443)
|.+++.+ +|++.|++.++..++..+ ..+.+||++++++++ ++..++.++..+
T Consensus 163 ~~l~g~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~ 218 (417)
T PRK10489 163 PALGGLLIAAGGVAWNYGLAAAGTFITLL-PLLRLPALPPPPQPR-----------------------EHPLRSLLAGFR 218 (417)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhCCCCCCCCccc-----------------------ccchHHHHHHHH
Confidence 9988764 799999888776665444 346677754332100 000001112222
Q ss_pred hhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHH
Q 013411 234 LLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGL 313 (443)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 313 (443)
..+++|.++...+..++... ..+...+.|.|.++.+|.++.+.+.+.+..+++.+++.. ..+++.||.++++.+..+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~-~~~~l~~~~~~~~~l~~~~ 296 (417)
T PRK10489 219 FLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGAL-TSGWLAHSARPGLLMLLST 296 (417)
T ss_pred HHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHH-HHHHhhhccCcchHHHHHH
Confidence 23356666555554444332 345677889999988899999999999999999999995 4579999977777888887
Q ss_pred HHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhh
Q 013411 314 LFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFL 392 (443)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 392 (443)
.+..++.+.+...++.+.... ..+.+++.+...+...+++.+..|++.||+++|+.+...++|..++|.+.|.+.+..+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g 376 (417)
T PRK10489 297 LGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT 376 (417)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc
Confidence 777777776666555443333 4455666666677788899999999999999999999999999999999999999853
No 10
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-36 Score=265.23 Aligned_cols=364 Identities=16% Similarity=0.161 Sum_probs=285.9
Q ss_pred hhHHHHHHHHhhhc----ccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHH
Q 013411 9 HLFITIFVHCFSTS----MVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP 84 (443)
Q Consensus 9 ~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~ 84 (443)
.+++..++...+++ ...-..|.+. +|.++|..|.|++.+.+.+.+.++-.+.|.++||.+.|+.+.++
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~--------e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALI--------EDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHH--------HhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 34445555544443 3444555553 44668889999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhh--h
Q 013411 85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA--R 162 (443)
Q Consensus 85 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~--~ 162 (443)
++++++..++++++++ .+.+.+.-+++|+ .+|.-.|++...++.|+|++|||+..++++.+-++|..+.|++. +
T Consensus 101 Lilsai~nil~Gfs~s---~~~~~~l~~lng~-fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la 176 (448)
T COG2271 101 LILSAIVNILFGFSPS---LFLFAVLWVLNGW-FQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA 176 (448)
T ss_pred HHHHHHHHHHHhhhhH---HHHHHHHHHHHHH-HhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHH
Confidence 9999999999999998 9999999999999 99999999999999999999999999999999999999888877 4
Q ss_pred hh----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhccc-CCchhHHHhhhcc
Q 013411 163 FI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKR-LPSIDDMVHLLKS 237 (443)
Q Consensus 163 ~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 237 (443)
.+ +||..|++.++++++..++.++..+|+|+...-.+ .++...+..+.. +++++.+ ...+....+.+.+
T Consensus 177 ~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~----ie~~~~d~~e~~--~~~~~~~~ls~~~i~~~YVL~ 250 (448)
T COG2271 177 FFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP----IEEYRGDPLEIY--EEEKENEGLTAWQIFVKYVLK 250 (448)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC----HHHhhcCchhhh--hhhccCCCccHHHHHHHHHHc
Confidence 43 89999999999999999999899999988644111 000000111110 1111111 2335556677779
Q ss_pred ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccchHHH-HHHH
Q 013411 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV--GEARLLS-FGLL 314 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~-~~~~ 314 (443)
||.+|.+.+..++....-++++.|.|.|+.|..|+|..+++...+..-.+++++.+++ |+++||+ |||.... +..+
T Consensus 251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~-GwlSDklfkgrR~p~~~i~~~ 329 (448)
T COG2271 251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLA-GWLSDKLFKGRRGPMALIFML 329 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999655 8999996 5555444 4444
Q ss_pred HHHHHHHHHHhhcch-hHHHH--HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHH-HHHHhHHhHHHHHHh
Q 013411 315 FGCVHMFLYSVAWSS-WVPYA--AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSF-ANLVSPLAFSPLTAL 390 (443)
Q Consensus 315 ~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~ 390 (443)
...++...+-..++. ..... ...+|+......-..-....|..|++..|++.|+...+.++ |.+.+....|++.|.
T Consensus 330 ~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~ 409 (448)
T COG2271 330 LITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT 409 (448)
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence 455555555555543 22222 33345444444455666789999999999999999999998 999999999999887
Q ss_pred h
Q 013411 391 F 391 (443)
Q Consensus 391 ~ 391 (443)
+
T Consensus 410 ~ 410 (448)
T COG2271 410 W 410 (448)
T ss_pred C
Confidence 4
No 11
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=100.00 E-value=9.2e-36 Score=274.77 Aligned_cols=351 Identities=13% Similarity=0.047 Sum_probs=254.6
Q ss_pred HHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHH
Q 013411 17 HCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILA 96 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~ 96 (443)
+......+.|.+|.+ ++|++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.....
T Consensus 3 ~~~~~~~~~~~lp~i--------~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~ 74 (368)
T TIGR00903 3 SQAIWVTFSPVLSLV--------AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLL 74 (368)
T ss_pred hhHHHHHHHhhHHHH--------HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 344556677888888 445788899999999999999999999999999999999987666555544433333
Q ss_pred hccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----chhhHHHH
Q 013411 97 YSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQA 172 (443)
Q Consensus 97 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~ 172 (443)
..++ ++.+++.|+++|+ +.+. .+.....++|++|+|+|++++++.+.+..+|.+++++++..+ +||+.|++
T Consensus 75 ~~~~---~~~l~~~R~l~G~-g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~ 149 (368)
T TIGR00903 75 DPFN---YEWLLACQLLAAL-GQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP 149 (368)
T ss_pred Hhcc---HHHHHHHHHHHHh-HhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 3367 9999999999999 8776 456667779999999999999999999999999998887765 99999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHH
Q 013411 173 ATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSN 252 (443)
Q Consensus 173 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (443)
.++++++..++.++.+||+|+++++.. +. ++. .+++++ .+ ++|.++...+..++..
T Consensus 150 ~~~l~~~~~~~~~~~lp~~p~~~~~~~-------------~~----~~~---~~~~~~---ll-~~~~~~~~~~~~~~~~ 205 (368)
T TIGR00903 150 IAAVAAAGIILVLAALPALPFQAAEGF-------------GF----KDA---VKEFGA---LA-GRKDLWIIGAILGFGV 205 (368)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCc-------------ch----HHH---HHHHHH---HH-cChhHHHHHHHHHHHH
Confidence 888888877778888999876532100 00 000 011233 23 6788888888899999
Q ss_pred hhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc---chHHH-HHHHHHHHHHHHHHhhcc
Q 013411 253 LADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGE---ARLLS-FGLLFGCVHMFLYSVAWS 328 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~ 328 (443)
..++++.+|+|.|+++ .|++.. .+.......+.+.++. +++.||..| |+... ....+.++....+....+
T Consensus 206 ~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g~----~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~ 279 (368)
T TIGR00903 206 ALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIGV----AVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELN 279 (368)
T ss_pred HHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHHH----HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999976 478865 5666666666565554 566676654 33322 233334444444444433
Q ss_pred hhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHH
Q 013411 329 SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMC 407 (443)
Q Consensus 329 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 407 (443)
.+.... ..+.+++....++..+++.+|.+|++.||++.|+.+..+++++..+|.+.+.+.... ...+.+
T Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~----------~~~f~~ 349 (368)
T TIGR00903 280 RLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSA----------EAYFTF 349 (368)
T ss_pred cHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCH----------HHHHHH
Confidence 333222 333345555566778899999999999999999999999999999999998877311 224555
Q ss_pred HHHHHHHHHHHHH
Q 013411 408 IGFVSMTAFIQSI 420 (443)
Q Consensus 408 ~~~~~~~~~~~~~ 420 (443)
.++..+++.+...
T Consensus 350 ~~~~~~i~~~~~~ 362 (368)
T TIGR00903 350 LAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666555543
No 12
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=100.00 E-value=6.3e-35 Score=281.20 Aligned_cols=360 Identities=14% Similarity=0.107 Sum_probs=252.5
Q ss_pred hhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHH--HHHHHhHHHHHhhhcccccccccccchhhHHHH
Q 013411 8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGF--QQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI 85 (443)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~--~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~ 85 (443)
....+..+++.++..++....|.+.++.. ++.++. . ...+. ..++..++..+++++.|+++||+|||+++.++.
T Consensus 19 ~~~~~g~~~~~~d~~~~~~~~~~i~~~~~-~~~~~~-~--~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 19 TAASLGNAMEWFDFGVYGFVAYALGKVFF-PGADPS-V--QMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCcH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34467788888888888777776655432 221110 1 11122 358888999999999999999999999999999
Q ss_pred HHhHHHHHHHHhccCCchhH--------HHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhh
Q 013411 86 TLSIIPLAILAYSRSRNFFY--------AYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCG 157 (443)
Q Consensus 86 ~~~~i~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g 157 (443)
+++++++++++++++ ++ .++++|+++|+ +.|...+...+++.|++|+++|+++.++.+.+..+|..+|
T Consensus 95 ~l~~i~~~~~a~~~~---~~~~g~~a~~~l~~~R~l~G~-g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg 170 (490)
T PRK10642 95 VIMSISTFCIGLIPS---YATIGIWAPILLLLCKMAQGF-SVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLG 170 (490)
T ss_pred HHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHh-HhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999 65 38999999999 9999999999999999999999999999998888888777
Q ss_pred hhhhh------------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccC
Q 013411 158 TISAR------------FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRL 225 (443)
Q Consensus 158 ~~l~~------------~~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (443)
+.+.. ..+||+.|++.+++.++ .++....+||+|+..++.+..++ .+ .+...+.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~--------~~---~~~~~~~~~ 238 (490)
T PRK10642 171 AGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQ--------GD---REGLQDGPK 238 (490)
T ss_pred HHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhh--------hc---ccccccccc
Confidence 64432 24899999997765554 34445678898764321100000 00 000001112
Q ss_pred CchhHHHhhhccC-hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 013411 226 PSIDDMVHLLKSS-PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVG 304 (443)
Q Consensus 226 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (443)
.++++.++ ++ +.+.......++....++....+.|.|+++.+|++..+.+.......++..++. ++.++++||+|
T Consensus 239 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g 314 (490)
T PRK10642 239 VSFKEIAT---KHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQ-PVMGLLSDRFG 314 (490)
T ss_pred CCHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 24444432 22 222222233344556677788899999988889998887777777778888888 44579999999
Q ss_pred cchHHHHHHHHHHHHHHH-HHh--hcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHh
Q 013411 305 EARLLSFGLLFGCVHMFL-YSV--AWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVS 380 (443)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~ 380 (443)
||+.+..+.+...+.... +.. ..+...... .++.+++.+...+....+..|.+|++.|+++.|..+.....++.++
T Consensus 315 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~ 394 (490)
T PRK10642 315 RRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLT 394 (490)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHH
Confidence 999887776543332222 222 222222222 3344555555566677788899999999999998777777888999
Q ss_pred HHhHHHHHHhh
Q 013411 381 PLAFSPLTALF 391 (443)
Q Consensus 381 ~~~~g~l~~~~ 391 (443)
|.+.+++.+..
T Consensus 395 p~i~g~l~~~~ 405 (490)
T PRK10642 395 PTLAAWLVEST 405 (490)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 13
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=100.00 E-value=7.2e-36 Score=278.45 Aligned_cols=350 Identities=15% Similarity=0.173 Sum_probs=279.7
Q ss_pred hhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHH
Q 013411 8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL 87 (443)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~ 87 (443)
+.++...++..++..+..+.+|.+..+ .+.+..+.|++.+++.++..++++++|+++||+|||++++.+.++
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~ 73 (365)
T TIGR00900 2 RLLFAAQLISLIGTAITQVALPLYVLA--------GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLI 73 (365)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH--------hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHH
Confidence 346778889999999999999998655 567788999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcc-----CCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhh
Q 013411 88 SIIPLAILAYSR-----SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR 162 (443)
Q Consensus 88 ~~i~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~ 162 (443)
.+++..+..+++ + ++.+++.|+++|+ +.+...+...+++.|++|+++|++++++.+....+|.++||.+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~ 149 (365)
T TIGR00900 74 RAVLVAVLPFVALLGGLN---IWQVYVLAGILAI-AQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGG 149 (365)
T ss_pred HHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 888888887776 7 8999999999999 999999999999999999999999999999999999999998887
Q ss_pred hh----chhhHHHHHHHHHHHHHHHHHHh-ccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhcc
Q 013411 163 FI----STSAAFQAATAGSIISAVYMRIF-LPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKS 237 (443)
Q Consensus 163 ~~----~w~~~f~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (443)
.+ +||+.|++.++..++..+..+.. .||++++++ ++ .++ +.. .+.++..+.+++
T Consensus 150 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------~~~----~~~----~~~~~~~~~~~~ 208 (365)
T TIGR00900 150 LMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEI-QA------------LSN----AVL----RDTREGIKFVLK 208 (365)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccc-cc------------cch----hHH----HHHHhHHHHHHc
Confidence 64 89999988877666554433222 222221111 00 000 000 011112223446
Q ss_pred ChhhHHHHHHHHHHHhhhhhhH-HHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Q 013411 238 SPTFSQAAIVAFLSNLADAGLQ-GSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFG 316 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 316 (443)
+|.++...+..++......... .+.|.|.++.+|.++.+.+......+++.+++..+. +++.||.+|++.+..+..+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~ 287 (365)
T TIGR00900 209 NPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLL-GLLGRYFKRMALMTGAIFVI 287 (365)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhchhHHHHHHHHHH
Confidence 7777777777776666666555 788899888789999999999999999999999555 79999999999988887777
Q ss_pred HHHHHHHHhhcc-hhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 317 CVHMFLYSVAWS-SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 317 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
+++.......++ .+.... .++.+++.+...+...++..|.+|+++|+++.|+.+...+++..++|.+.|.+.|..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 288 GLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777776666553 443333 556688888888999999999999999999999999999999999999999999874
No 14
>TIGR00893 2A0114 d-galactonate transporter.
Probab=100.00 E-value=7.3e-36 Score=281.62 Aligned_cols=379 Identities=17% Similarity=0.179 Sum_probs=273.8
Q ss_pred HHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHH
Q 013411 16 VHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAIL 95 (443)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~ 95 (443)
+..++.....+..|.+ .++++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++..++
T Consensus 5 ~~~~~~~~~~~~~~~~--------~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 76 (399)
T TIGR00893 5 INYLDRANLSFAAPML--------QEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ 76 (399)
T ss_pred HHHHHHHhhhHhHHHH--------HHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHH
Confidence 3445555666666665 33477888899999999999999999999999999999999999999999999999
Q ss_pred HhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----chhhHHH
Q 013411 96 AYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQ 171 (443)
Q Consensus 96 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~ 171 (443)
+++++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|.+++|.+++.+ +||+.|+
T Consensus 77 ~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 152 (399)
T TIGR00893 77 AFAGA---YVSLYILRVLLGA-AEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFI 152 (399)
T ss_pred HHHcC---HHHHHHHHHHHHH-HHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHH
Confidence 99998 9999999999999 88999999999999999999999999999999999999999888764 8999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHH
Q 013411 172 AATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLS 251 (443)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (443)
+.+++.++..+...+..||++++++..+..++ +...+. ...+.+++++++...++..+.+ ++|.++...+..++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 227 (399)
T TIGR00893 153 IEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEK---YIVVGG-LLAEQQGKGPSTPKKYQIKELL-KDRRVWGLALGQFLV 227 (399)
T ss_pred HHHHHHHHHHHHhhheecCCCCccccCCHHHH---hhcchh-hccccccccccCCCccchHHHh-cCHHHHHHHHHHHHH
Confidence 99888877666666667776553321110000 000000 0000000011111112222223 677788888888888
Q ss_pred HhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccch--HHHHHHH--HHH--HHHHHHHh
Q 013411 252 NLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEAR--LLSFGLL--FGC--VHMFLYSV 325 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~--~~~--~~~~~~~~ 325 (443)
.........+.|.|+++.+|.++.+.+...+...+..+++.+ ..+++.||++||+ ....... ... .+......
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (399)
T TIGR00893 228 NIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMI-LGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT 306 (399)
T ss_pred HhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 888888899999999998899999999999999999999994 5579999999886 1111111 110 11111111
Q ss_pred --hcchhHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchh
Q 013411 326 --AWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGF 403 (443)
Q Consensus 326 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~ 403 (443)
.++.+.......++.......+...++..|.+|+++|+++.|+.+...++|..++|.+.|.+.|..+++ ..
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~-------~~ 379 (399)
T TIGR00893 307 NYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSF-------AG 379 (399)
T ss_pred ccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCch-------hH
Confidence 112222222333333333368899999999999999999999999999999999999999999875322 23
Q ss_pred HHHHHHHHHHHHHHHH
Q 013411 404 SIMCIGFVSMTAFIQS 419 (443)
Q Consensus 404 ~~~~~~~~~~~~~~~~ 419 (443)
.+.+.+++.+++.+..
T Consensus 380 ~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 380 ALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555544443
No 15
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=100.00 E-value=2.4e-35 Score=284.34 Aligned_cols=370 Identities=13% Similarity=0.104 Sum_probs=290.6
Q ss_pred cchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHH
Q 013411 6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI 85 (443)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~ 85 (443)
.+..+++..++..++..++...+|.+.. |++.+..+.+|+.+.+.++..++++++|+++||+|||++++.+.
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~--------~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~ 78 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSM--------TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGG 78 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3456688889999999999999999954 47777888999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCC-CCCcchhHHHHHHHHhhhhhhhhhhhhhhh
Q 013411 86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNV-PPGRRASVFGIFSGIVSGAFVCGTISARFI 164 (443)
Q Consensus 86 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~ 164 (443)
+++.++++++++++| ++.++++|+++|+ +.+...|.....+.+.+ |+++|++++++......+|..+||.+++.+
T Consensus 79 ~~~~~~~~~~~~a~~---~~~li~~r~l~G~-g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l 154 (495)
T PRK14995 79 TLFGLASLAAAFSPT---ASWLIATRALLAI-GAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGIL 154 (495)
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999999 88888888888787765 678999999999999999999999998875
Q ss_pred ----chhhHHHHHHHHHHHHHHHHHHhccCCCCcccc-ccccccch------------hhhhhhhhhh------------
Q 013411 165 ----STSAAFQAATAGSIISAVYMRIFLPESVRDEDL-YTPILSSK------------AEISASCEES------------ 215 (443)
Q Consensus 165 ----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~------------~~~~~~~~~~------------ 215 (443)
+||+.|++...+.++..++..+.+||+++++++ .|...... .+........
T Consensus 155 ~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (495)
T PRK14995 155 LEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGAL 234 (495)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 899999999888887777777788886543221 11111000 0000000000
Q ss_pred ---hhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHH
Q 013411 216 ---TKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQ 292 (443)
Q Consensus 216 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 292 (443)
.....+.+.+.+..+ ++.+ ++|.+....+..++......+...+.|.|+++.+|+++.++|.......++..++.
T Consensus 235 ~l~~f~~~e~~~~~p~~~-~~lf-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~ 312 (495)
T PRK14995 235 LLGLFIRTQLAASRPMID-MRLF-THRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSG 312 (495)
T ss_pred HHHHHHHHHhcCCCCCcC-HHHh-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 000011112222222 2233 56777777777777777777888899999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhc---chhHHH-HHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhH
Q 013411 293 LIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW---SSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGC 368 (443)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 368 (443)
+ +.|++.||+++|+.+..+..+..++...+.... +.+... ..++.|++.+...+.......+.+|+++++.+.++
T Consensus 313 ~-~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~ 391 (495)
T PRK14995 313 P-IAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAI 391 (495)
T ss_pred H-HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHH
Confidence 4 447999999999998888888777766554432 333333 35666888888888889999999999999999999
Q ss_pred HhHHHHHHHHHhHHhHHHHHHh
Q 013411 369 ISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 369 ~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
.++..++|+.+|+.+.|.+.+.
T Consensus 392 ~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 392 ETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 16
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=100.00 E-value=2.1e-34 Score=270.26 Aligned_cols=370 Identities=12% Similarity=0.115 Sum_probs=280.3
Q ss_pred hhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHH
Q 013411 8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL 87 (443)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~ 87 (443)
..++...++..++..+..|.+|.++.+ +++.+..+.|++.+...++..+.+++.|+++||+|||++++.+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~ 85 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVD-------QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLM 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHH
Confidence 466788889999999999999988754 4678899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh---
Q 013411 88 SIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--- 164 (443)
Q Consensus 88 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~--- 164 (443)
.+++.+++.++++ ++.+++.|+++|+ +.+...|...+++.|++|+|+|++++++.+....+|..+||.+++.+
T Consensus 86 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~ 161 (400)
T PRK11646 86 RAAGFATMAIAHE---PWLLWLSCILSGL-GGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY 161 (400)
T ss_pred HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999888 8999999999999 88888899999999999999999999999999999999999988865
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHH
Q 013411 165 STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQA 244 (443)
Q Consensus 165 ~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (443)
+||+.|++.+...++..+...+..||.+++++ .++.++++++ .+ ++|.++..
T Consensus 162 g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~------------------------~~~~~~~~~~---~~-~~~~~~~~ 213 (400)
T PRK11646 162 DFRLVCATGAVLFVLAAAFNAWLLPAYKLSTV------------------------RTPVREGMTR---VL-RDKRFVTY 213 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCccccccc------------------------chhhHHHHHH---HH-cCchHHHH
Confidence 89999999888777665555556665321110 0000012222 22 45555544
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH
Q 013411 245 AIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYS 324 (443)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (443)
.+..+...........+.|.|.++..+ ++.+.+.+.+..++..........++..||++.++.+..+..+.+++...+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~ 292 (400)
T PRK11646 214 VLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIG 292 (400)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 444333333333445678999888744 6778888888887777766656654445566666667777777777777666
Q ss_pred hhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchh
Q 013411 325 VAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGF 403 (443)
Q Consensus 325 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~ 403 (443)
..++.+.... ..+++.+.+...|...++..+.+|+++||+++|+.+....+|..+||.+.|.+.|..++++ ....
T Consensus 293 ~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~----~~~~ 368 (400)
T PRK11646 293 MVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALN----QPEL 368 (400)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcC----Ccch
Confidence 6665544333 4455677777788889999999999999999999999999999999999999999864332 1233
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013411 404 SIMCIGFVSMTAFIQSIM 421 (443)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~ 421 (443)
.+...+++.+++......
T Consensus 369 ~~~~~~~~~~~~~~~~~~ 386 (400)
T PRK11646 369 PWMMLGIIGLITLLALYW 386 (400)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555444443
No 17
>PRK10091 MFS transport protein AraJ; Provisional
Probab=100.00 E-value=2.1e-34 Score=269.45 Aligned_cols=345 Identities=13% Similarity=0.153 Sum_probs=261.6
Q ss_pred CcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHH
Q 013411 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP 84 (443)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~ 84 (443)
+.++.+.+..+....+.....|.+|.+.+ |++.+..+.|++.+.+.++..++++++|+++||+|||+++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 74 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAH--------DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFL 74 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHH--------HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHH
Confidence 45667778888888888899999998844 4788888999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh
Q 013411 85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI 164 (443)
Q Consensus 85 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~ 164 (443)
..+.+++.++++++++ ++.+++.|+++|+ +.+...+....++.|++|+++|+++++....+..+|..+||.+++.+
T Consensus 75 ~~~~~~~~~l~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 150 (382)
T PRK10091 75 VALCVIGNAMFTLSSS---YLMLAIGRLVSGF-PHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL 150 (382)
T ss_pred HHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999 9999999999999 88888888889999999999999999999999999999998887654
Q ss_pred ----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChh
Q 013411 165 ----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPT 240 (443)
Q Consensus 165 ----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (443)
+||+.|++.+++.++..+..++.+||.+++++. +.++..+.+ +++.
T Consensus 151 ~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~-----------------------------~~~~~~~~~-~~~~ 200 (382)
T PRK10091 151 SQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG-----------------------------GLREQFHFL-RSPA 200 (382)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc-----------------------------CHHHHHHHh-cChH
Confidence 899999999988777666666677875432110 000111223 3344
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 013411 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM 320 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 320 (443)
.+......++..........+.++|+++.+|+++.+.+.+.+..+++.+++.+ ..+++.||+++|+.+..+..+..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~~r~~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNL-LSGRLSGRYSPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhH-HHheeccccCchhHHHHHHHHHHHHH
Confidence 44444444444444444556677888887899999999999999999999995 45899999999999988888877776
Q ss_pred HHHHhh-cchhHHHH-HHHHHHhhhhhhhHHH-HHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcC
Q 013411 321 FLYSVA-WSSWVPYA-AAVFSILSVFSHPCLR-TIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSD 394 (443)
Q Consensus 321 ~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~ 394 (443)
+++... ++.+.... ..+.+.+.....+... ....+..|++.++.+. .+...++|..+||.+.|.+.|..+++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~ 354 (382)
T PRK10091 280 LMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAY 354 (382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCc
Confidence 555433 33333222 3333444333333333 3444555555555543 46778899999999999999975433
No 18
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=100.00 E-value=4.8e-35 Score=282.76 Aligned_cols=402 Identities=15% Similarity=0.120 Sum_probs=264.4
Q ss_pred HHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHH
Q 013411 11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII 90 (443)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i 90 (443)
.+..+.+.++.....+..|.+.++...+...+++.+..+.|++.+++.++.+++++++|+++||+|||++++++.++..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i 97 (479)
T PRK10077 18 TLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI 97 (479)
T ss_pred HHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44556666677778888887766655555566788999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhc---------cCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhh
Q 013411 91 PLAILAYS---------RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA 161 (443)
Q Consensus 91 ~~~~~~~~---------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~ 161 (443)
+.+.++++ ++.+.++.++++|+++|+ +.+...+...++++|++|+++|++++++.+.+..+|.++++.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~ 176 (479)
T PRK10077 98 SALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI-GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVN 176 (479)
T ss_pred HHHHHHhhccccccccccchhHHHHHHHHHHHHhh-hHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88877763 232335678999999999 99999999999999999999999999999999999998887765
Q ss_pred h------------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccch---hhhhhhhhhh---hhhhhh-c
Q 013411 162 R------------FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSK---AEISASCEES---TKKLQV-F 222 (443)
Q Consensus 162 ~------------~~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~-~ 222 (443)
. ..+||+.|++.++..++..+ ..+++||+|++..+++..++.+ ++.....+.+ ++..+. +
T Consensus 177 ~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (479)
T PRK10077 177 YFIARSGDASWLNTDGWRYMFASEAIPALLFLM-LLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLD 255 (479)
T ss_pred HHHhccCcccccccCChHHHHHHHHHHHHHHHH-HHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 4 23799999998877776544 4577899876421110000000 0000000000 000000 0
Q ss_pred ccCCchhHHHhhhccChhhHHHHH----HHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013411 223 KRLPSIDDMVHLLKSSPTFSQAAI----VAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPV 298 (443)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (443)
.+....+.. + ... ...... ..+...........+.|.+.++ .|.+....+......++...++. ++.++
T Consensus 256 ~~~~~~~~~---~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~-~~~g~ 328 (479)
T PRK10077 256 HGRKTGGKL---L-MFG-VGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFT-VLAIM 328 (479)
T ss_pred Hhhhhhhhh---c-chh-HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHH-HHHHH
Confidence 000000000 0 000 000111 1111111122233444655554 58887777777777888888888 55579
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHhhc--c-hhHH--HHHHHHHHhhhh-hhhHHHHHHHhcCCCCcchhHHhHHhHH
Q 013411 299 LAPTVGEARLLSFGLLFGCVHMFLYSVAW--S-SWVP--YAAAVFSILSVF-SHPCLRTIVSKQVASNEQGKAQGCISGI 372 (443)
Q Consensus 299 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 372 (443)
+.||+|||+++..+.++..++.+.+.... + .+.. ....+++.+.+. ..|..+.+++|.+|+++|+++.|+.+..
T Consensus 329 l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~ 408 (479)
T PRK10077 329 TVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA 408 (479)
T ss_pred HHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHH
Confidence 99999999999999998888877665432 1 1111 123333444433 3477889999999999999999999999
Q ss_pred HHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 373 CSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 373 ~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
.+++..+++.+.+.+.+. +.....+.+ ...+.+.++..+++.+..+...
T Consensus 409 ~~~g~~~~~~~~p~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 457 (479)
T PRK10077 409 QWIANYFVSWTFPMMDKN-SWLVAHFHN-GFSYWIYGCMGVLAALFMWKFV 457 (479)
T ss_pred HHHHHHHHHHHhHHHHhc-cchhhhccC-ccHHHHHHHHHHHHHHHHHhcc
Confidence 999999998888765521 000000111 2345555555555555555444
No 19
>PRK03633 putative MFS family transporter protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=269.78 Aligned_cols=367 Identities=14% Similarity=0.090 Sum_probs=272.6
Q ss_pred CCC-CCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccch
Q 013411 1 MEK-KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKA 79 (443)
Q Consensus 1 m~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~ 79 (443)
|++ ++.++.++...++..++.+...|.+|.+.++ ++.|..+.|++.+.+.++..+++++.|+++||+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--------~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~ 72 (381)
T PRK03633 1 MSTYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ--------EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR 72 (381)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444 6677788899999999999999999999654 6778889999999999999999999999999999999
Q ss_pred hhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhh
Q 013411 80 LLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTI 159 (443)
Q Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 159 (443)
++..+.++.+++..+++++++ ++.++++|+++|+ +.+...|...+.+.|..++++|+++++..+.+.++|..+||.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 148 (381)
T PRK03633 73 SYYLASLIFAAGCAGLGLMVG---FWSWLAWRFVAGI-GCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQL 148 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999 888888888888889999999999999999999999999999
Q ss_pred hhhhhch---hhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhc
Q 013411 160 SARFIST---SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLK 236 (443)
Q Consensus 160 l~~~~~w---~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (443)
+++.+.. +..++..+......... ++.+.++++++ + ++..+.++. +
T Consensus 149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----------------------~--~~~~~~~~~---~- 197 (381)
T PRK03633 149 LVSKVSTELMSVLPWVTGLVLAAILPL--LFTRILNQQAE-----------------------N--HDSTSIWPM---L- 197 (381)
T ss_pred HHhcccccccchHHHHHHHHHHHHHHH--HHhcccCCCCC-----------------------C--CCCCCHHHH---H-
Confidence 9987632 22233332222221111 22222211111 0 001122222 2
Q ss_pred cChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Q 013411 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFG 316 (443)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 316 (443)
++|.++......+.....+.....++|.|.++. |.++.+.+...+...+..++++.. .+++.||+++|+.+..+....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~-~g~l~dr~~~~~~l~~~~~~~ 275 (381)
T PRK03633 198 KLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQ-GMSDASIGFWMALLVSAGILGQWP-IGRLADRFGRLLVLRVQVFVV 275 (381)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhh-hHHHHHHcCcHHHHHHHHHHH
Confidence 344444443334444444555667889999874 999999999999999999999955 489999999999988887777
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCC
Q 013411 317 CVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRA 396 (443)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 396 (443)
.++..... ..........+.+.+.....|...+...|..|+++++...+..+...++|..++|.+.|++.|+.+.
T Consensus 276 ~~~~~~~~--~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~--- 350 (381)
T PRK03633 276 ILGSIAML--SQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSD--- 350 (381)
T ss_pred HHHHHHHh--hhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---
Confidence 76655443 2222222344456555667888999999999988888888888888899999999999999998531
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHh
Q 013411 397 PFNFPGFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (443)
...+.+.+.+.++.....++.
T Consensus 351 -----~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 351 -----NLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred -----cHHHHHHHHHHHHHHHHHHhc
Confidence 235555555555554444443
No 20
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=100.00 E-value=4.2e-35 Score=277.30 Aligned_cols=371 Identities=15% Similarity=0.183 Sum_probs=267.3
Q ss_pred hhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHH
Q 013411 8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL 87 (443)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~ 87 (443)
...++..+.+.++..+..+..|.+. ++++.+..+.|++.+.+.++..+++++.|+++||+|||++++.+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 86 (405)
T TIGR00891 15 SAAWLGWLLDAFDFFLVALVLAEVA--------GEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL 86 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3557777788888888888888774 34788888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh---
Q 013411 88 SIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--- 164 (443)
Q Consensus 88 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~--- 164 (443)
.+++.++++++++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+
T Consensus 87 ~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 87 FSAGTLACGFAPG---YITMFIARLVIGI-GMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV 162 (405)
T ss_pred HHHHHHHHHHhcc---HHHHHHHHHHHHh-hhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999999 98999999999999999999999999999999999999998887654
Q ss_pred -c--hhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccC-hh
Q 013411 165 -S--TSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS-PT 240 (443)
Q Consensus 165 -~--w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 240 (443)
+ ||+.|++.++..++. ++....+||+++++++++..+...++..+.. .++...+...+.......+..+++ +.
T Consensus 163 ~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (405)
T TIGR00891 163 WGDGWRALFFISILPIIFA-LWLRKNIPEAEDWKEKHAGKALVRTMVDILY--GGEHRIANIVMTLAAAMVQSAGKRWPT 239 (405)
T ss_pred cCccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHhhhhhhhhhHHHHHh--ccchhhhhhhhhhhHHhhhhhhhhhHH
Confidence 4 999998876655443 3444667876543221110000000000000 000000000000000111111111 11
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 013411 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM 320 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 320 (443)
+...................++|.|+.+.+|+++.+.+.+.+..+++.+++.++. +++.||++||+.+..+.....+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~-g~l~dr~g~~~~~~~~~~~~~~~~ 318 (405)
T TIGR00891 240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVF-GFLGDWLGRRKAYVCSLLAGQLLI 318 (405)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCchhhhHHHHHHHHHHH
Confidence 2222333333344445566778999988889999999999999999999999555 799999999998887776653333
Q ss_pred H-HHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcC
Q 013411 321 F-LYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSD 394 (443)
Q Consensus 321 ~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~ 394 (443)
. ......+.+.... ..+.+.......+....++.|.+|+++|++++|+.+...+++..++|.+.|.+.|..+.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~ 394 (405)
T TIGR00891 319 IPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEY 394 (405)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2 2222233333333 244455555666778889999999999999999999999999999999999999986543
No 21
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=100.00 E-value=2.8e-34 Score=270.75 Aligned_cols=368 Identities=13% Similarity=0.131 Sum_probs=271.7
Q ss_pred CCCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhh
Q 013411 2 EKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALL 81 (443)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~ 81 (443)
|.++++..+.+..++..++.++..|.+|.+.++ +++.|..+.|++.+++.++..+++++.|+++||+||||++
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~-------~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l 84 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHD-------QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV 84 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH
Confidence 456778888999999999999999999987654 4677888999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHhcc---CC--chhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhh
Q 013411 82 TVPITLSIIPLAILAYSR---SR--NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVC 156 (443)
Q Consensus 82 ~~~~~~~~i~~~~~~~~~---~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 156 (443)
+.+.++.+++.+.+.++. +. .+++.+++.|+++|+ +.+...+...+++.|+.|+|+|++++++.+....+|.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 163 (399)
T PRK05122 85 VFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGI-GESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI 163 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHh-hHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH
Confidence 999998888776665432 10 126789999999999 989988999999999999999999999999999889888
Q ss_pred hhhhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHH
Q 013411 157 GTISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMV 232 (443)
Q Consensus 157 g~~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (443)
|+.+++.+ +|+..+++..+..++..+.. ...|+++++++ ++.++++..
T Consensus 164 g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------------------~~~~~~~~~ 215 (399)
T PRK05122 164 GAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA-RPRPAVPPVKG---------------------------ERLPFRRVL 215 (399)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCc---------------------------cchhHHHHH
Confidence 88887654 89988877666544322211 11222111000 001122211
Q ss_pred hhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 013411 233 HLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFG 312 (443)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 312 (443)
+ ..+.......+..+.+.....+.+.|.++. |.+ +.+...+..+++.+++.+.. +++.||+++|+.+..+
T Consensus 216 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~-g~l~~r~~~~~~~~~~ 285 (399)
T PRK05122 216 G------RVWPYGMGLALASIGFGTIATFITLYYAAR-GWD--GAALALTLFGVAFVGARLLF-GNLINRLGGLRVAIVS 285 (399)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccc--cchHHHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHH
Confidence 1 111112222333444455666778887764 653 34566677788888888444 7999999999998888
Q ss_pred HHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 313 LLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
..+..++...+...++.+.... .++.+++.+..++.......+.+|+++||++.|+.+....+|..++|.+.|.+.+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 365 (399)
T PRK05122 286 LLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF 365 (399)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888887777766665554443 455678888888888888889999999999999999999999999999999999874
Q ss_pred hcCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 392 LSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
+ ....+.+.+++.+++.+..+..+
T Consensus 366 g--------~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 366 G--------YPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred C--------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 13355566666666665555544
No 22
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=100.00 E-value=6.3e-35 Score=282.26 Aligned_cols=416 Identities=13% Similarity=0.103 Sum_probs=270.4
Q ss_pred hhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHh
Q 013411 9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLS 88 (443)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~ 88 (443)
...+..+.+.++........|.+..+.. ..+...+..+.+++.+.+.++..++++++|+++||+|||+++.++.++.
T Consensus 20 ~~~~~~~~~g~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~ 96 (502)
T TIGR00887 20 IAGVGFFTDSYDLFCISLVTKMLGYVYY---HGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIM 96 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3455667777777777777776544321 1124566678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCc---hhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh--
Q 013411 89 IIPLAILAYSRSRN---FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF-- 163 (443)
Q Consensus 89 ~i~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-- 163 (443)
.++.++++++++.. .++.++++|+++|+ +.+...+....+++|++|+++|++++++.+....+|.++++.++..
T Consensus 97 ~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~-~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 97 IIATVASGLSPGSSPKSVMATLCFWRFWLGV-GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHHHHHHccCcccchHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888876421 15789999999999 9999999999999999999999999999999999998888776532
Q ss_pred -------------------------hchhhHHHHHHHHHHHHHHHHHHhccCCCCcc---ccc-c-cc---ccchhhh-h
Q 013411 164 -------------------------ISTSAAFQAATAGSIISAVYMRIFLPESVRDE---DLY-T-PI---LSSKAEI-S 209 (443)
Q Consensus 164 -------------------------~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~---~~~-~-~~---~~~~~~~-~ 209 (443)
.+||+.|.+.++.+++.. +..+++||+|++. +++ + .. ++...++ .
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~-~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~ 254 (502)
T TIGR00887 176 AGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLAL-YFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIE 254 (502)
T ss_pred HHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccc
Confidence 269999988777666544 4458899999852 111 1 11 1111100 0
Q ss_pred hhhhhhh-hhhhhcccCCchhHHHhhhccChhhHHH---HHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHH------
Q 013411 210 ASCEEST-KKLQVFKRLPSIDDMVHLLKSSPTFSQA---AIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFAD------ 279 (443)
Q Consensus 210 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------ 279 (443)
++.++.+ .+++++..+.++++.++...+++..+.. ....+...+.+++...+.|.++++ .|+++.+.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~ 333 (502)
T TIGR00887 255 AEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEEL 333 (502)
T ss_pred cCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHH
Confidence 0000000 0001111112455554322122222222 222333444555666677888865 4876543211
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHH-HhhhhhhhH
Q 013411 280 ------LMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS----SWVPYAAAVFS-ILSVFSHPC 348 (443)
Q Consensus 280 ------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~ 348 (443)
......++.+++. ++.+++.||+|||+++..+..+.+++..++....+ ........+.. +......+.
T Consensus 334 ~~~~~~~~~~~~~~~i~g~-~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (502)
T TIGR00887 334 YKTAVGNLIIALAGTVPGY-WVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNAT 412 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCch
Confidence 1223344555566 45579999999999998888777776655554321 11111111222 222234567
Q ss_pred HHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCC---CCCccchhHHHHHHHHHHHHHHHHHHhhcC
Q 013411 349 LRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDR---APFNFPGFSIMCIGFVSMTAFIQSIMIRVA 425 (443)
Q Consensus 349 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
.+.+..|.+|++.|+++.|+.+.+++++++++|.+.+.+.+..+... .... ....+.+.+++.+++.+.. ...
T Consensus 413 ~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~i~~-~~l-- 488 (502)
T TIGR00887 413 TFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW-MGHVLEIFALFMFLGILFT-LLI-- 488 (502)
T ss_pred hhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc-chHHHHHHHHHHHHHHHHh-eEe--
Confidence 77888999999999999999999999999999999999988532110 0011 1234555555555554443 333
Q ss_pred CCCCCCCCCcccc
Q 013411 426 PPLPVSSQRVSNC 438 (443)
Q Consensus 426 ~~~~~~~~~~~~~ 438 (443)
||+++++.++
T Consensus 489 ---pEt~~~~lee 498 (502)
T TIGR00887 489 ---PETKGKSLEE 498 (502)
T ss_pred ---ccCCCCCHHh
Confidence 6677666543
No 23
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=100.00 E-value=5e-34 Score=267.21 Aligned_cols=328 Identities=13% Similarity=0.153 Sum_probs=251.1
Q ss_pred hhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhcc
Q 013411 20 STSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSR 99 (443)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~ 99 (443)
...+..+.+|.+ .++++.++.+.|+..+++.++..+++++.|+++||+|||++++.+.++.+++.+++++++
T Consensus 35 ~~~~~~~~l~~~--------~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~ 106 (394)
T PRK10213 35 VEFLPVSLLTPM--------AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFAN 106 (394)
T ss_pred HHHHHHhhHHHH--------HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHC
Confidence 333555667776 345788899999999999999999999999999999999999999999999999999998
Q ss_pred CCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----chhhHHHHHHH
Q 013411 100 SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATA 175 (443)
Q Consensus 100 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~ 175 (443)
+ ++.+++.|+++|+ +.+...+...+++.|++|+|+|++++++...+.++|.++||.+++.+ +||+.|++.++
T Consensus 107 ~---~~~l~~~r~l~G~-~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 182 (394)
T PRK10213 107 S---FSLLLIGRACLGL-ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAV 182 (394)
T ss_pred h---HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 8 9999999999999 88889999999999999999999999999999999999999888764 89999999887
Q ss_pred HHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhh
Q 013411 176 GSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLAD 255 (443)
Q Consensus 176 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (443)
+.++..+......||++++++ +...+.+ +.+ ++|.++...+..++.....
T Consensus 183 l~~~~~l~~~~~~p~~~~~~~--------------------------~~~~~~~---~~l-~~~~~~~~~~~~~~~~~~~ 232 (394)
T PRK10213 183 MGVLCIFWIIKSLPSLPGEPS--------------------------HQKQNTF---RLL-QRPGVMAGMIAIFMSFAGQ 232 (394)
T ss_pred HHHHHHHHHHHHCCCCCcccc--------------------------cchhHHH---HHh-cCHHHHHHHHHHHHHHHHH
Confidence 776655544455676532211 0001112 223 5666666555555555555
Q ss_pred hhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-
Q 013411 256 AGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA- 334 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 334 (443)
.....+.++++.+.+|+++.+.+......+++.+++. +..+++.||.+++...............+....++.+....
T Consensus 233 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~-~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 311 (394)
T PRK10213 233 FAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGT-SLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGV 311 (394)
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 5556666444445569999999999999999999999 45579999954443343333333333444444444444443
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 335 AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
..+.|++.+...+...+.+.+..| +++++..+......++|..+||.+.|.+.|..
T Consensus 312 ~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~ 367 (394)
T PRK10213 312 AIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNI 367 (394)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 556688888888888989999888 66778888888888999999999999999974
No 24
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=100.00 E-value=5e-34 Score=271.07 Aligned_cols=372 Identities=12% Similarity=0.069 Sum_probs=249.9
Q ss_pred HHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHH
Q 013411 11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII 90 (443)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i 90 (443)
.+..+++.++...+....|.+.++....+.+ ..+..+.+.+.+...++..++++++|+++||+|||+++..+.+++++
T Consensus 28 ~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~ 105 (432)
T PRK10406 28 SSGNLVEWFDFYVYSFCSLYFAHIFFPSGNT--TTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCF 105 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3456777888777666656554443211111 12223445555666777779999999999999999999999999999
Q ss_pred HHHHHHhccCCc-----hhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhh---
Q 013411 91 PLAILAYSRSRN-----FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR--- 162 (443)
Q Consensus 91 ~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~--- 162 (443)
++++++++++.. ++..+++.|+++|+ +.|...|...+++.|++|+++|+++.+..+.+...|.++++.+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 106 GSLVIACLPGYETIGTWAPALLLLARLFQGL-SVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred HHHHHhhcCCchhHHHHHHHHHHHHHHHHHh-hhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999821 12368999999999 999999999999999999999999999998888888777765432
Q ss_pred ---------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHh
Q 013411 163 ---------FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVH 233 (443)
Q Consensus 163 ---------~~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (443)
..+||++|++.+++.++.. .....+||+++++++ + .++..++++.+
T Consensus 185 ~~~~~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~~~~~~~---------------------~--~~~~~~~~~l~- 239 (432)
T PRK10406 185 QTLEDAELREWGWRIPFALGAVLAVVAL-WLRRQLDETSQQETR---------------------A--LKEAGSLKGLW- 239 (432)
T ss_pred HhCCHHHHhccchHHHHHHHHHHHHHHH-HHHhcCCCCchHHHh---------------------h--hcccccHHHHH-
Confidence 3589999998887766543 334456665432210 0 00112344433
Q ss_pred hhccChhhHHHHHHHHH-HHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 013411 234 LLKSSPTFSQAAIVAFL-SNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFG 312 (443)
Q Consensus 234 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 312 (443)
+++..+...+...+ ....++....++|.|+++.+|++..+.+...+...+...+++.+. |+++||++||+.+..+
T Consensus 240 ---~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~-G~l~Dr~grr~~~~~~ 315 (432)
T PRK10406 240 ---RNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLI-GALSDKIGRRTSMLCF 315 (432)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCchHHHHHH
Confidence 45555544444333 355667788899999988889999888888888888888888555 7999999999887766
Q ss_pred HHHHHHHHHHHH--hh--cchhHHHHHHHH-HHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHH-HHHHhHHhHHH
Q 013411 313 LLFGCVHMFLYS--VA--WSSWVPYAAAVF-SILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSF-ANLVSPLAFSP 386 (443)
Q Consensus 313 ~~~~~~~~~~~~--~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~ 386 (443)
..+..+....+. .. .+.......... ....+...+....+.+|.+|++.|+++.|+.+...+. .+...|.+.+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~ 395 (432)
T PRK10406 316 GSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS 395 (432)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH
Confidence 554433322121 11 122221222221 2233334456678899999999999999999988764 34457777774
Q ss_pred HHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHh
Q 013411 387 LTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (443)
+ +..+.+ ...++..++..+++.+..+..
T Consensus 396 l-~~~g~~-------~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 396 L-KSIGME-------TAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred H-HHhCCC-------cHHHHHHHHHHHHHHHHHHHh
Confidence 4 443221 223444445555555554443
No 25
>PRK10504 putative transporter; Provisional
Probab=100.00 E-value=4.1e-34 Score=275.39 Aligned_cols=372 Identities=15% Similarity=0.101 Sum_probs=284.5
Q ss_pred cchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHH
Q 013411 6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI 85 (443)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~ 85 (443)
..+.+.+..++..++.....+.+|.+.++ ++.+..+.|++.+.+.++..++.+++|+++||+|||++++.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~ 82 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQS--------LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAI 82 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 45667777888888888889999988544 6788888999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh-
Q 013411 86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI- 164 (443)
Q Consensus 86 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~- 164 (443)
.+.+++.+++.++++ ++.+++.|+++|+ +.+...|...+++.|++|+++|+++.++.....++|..+||.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 83 VLFTLGSLFCALSGT---LNELLLARVLQGV-GGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999899888 9999999999999 98999999999999999999999999999999999999999888764
Q ss_pred ---chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccc-------------hhhhh--hhhhhh-----------
Q 013411 165 ---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSS-------------KAEIS--ASCEES----------- 215 (443)
Q Consensus 165 ---~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-------------~~~~~--~~~~~~----------- 215 (443)
+||+.|++......+..+......|+.+.+.++.+..... +++.. ......
T Consensus 159 ~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (471)
T PRK10504 159 EYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVAL 238 (471)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHH
Confidence 8999999988877776666656666654332221111000 00000 000000
Q ss_pred -hhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHH
Q 013411 216 -TKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLI 294 (443)
Q Consensus 216 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 294 (443)
....+++..+++..+ .+ ++++|.+...+...++..........+.|.|+++.+|.++.+.++......++..++..+
T Consensus 239 ~~~~~~~~~~~~~~~~-~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 316 (471)
T PRK10504 239 LLYLLHARNNNRALFS-LK-LFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRI 316 (471)
T ss_pred HHHHHHHhcCCCCccC-HH-HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000000111111111 12 336777877777777777777777778899999888999999999988888888887744
Q ss_pred HHHHhhhhcccchHHHHHHHHHHHHHHHHHhhc-ch--hHHH-HHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHh
Q 013411 295 MMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW-SS--WVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCIS 370 (443)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 370 (443)
. +++.||+++|+.+..+..+..+...++.... .. +... ...+.+++.+...+..+.+..+.+|++.+++++|+.+
T Consensus 317 ~-~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 395 (471)
T PRK10504 317 V-VQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLS 395 (471)
T ss_pred H-HHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHH
Confidence 4 7999999999999888887777766555432 11 2112 2344567777788888899999999999999999999
Q ss_pred HHHHHHHHHhHHhHHHHHHhhh
Q 013411 371 GICSFANLVSPLAFSPLTALFL 392 (443)
Q Consensus 371 ~~~~~g~~~~~~~~g~l~~~~~ 392 (443)
+...+|..+|+.+.|.+.+..+
T Consensus 396 ~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 396 MIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998864
No 26
>PRK09952 shikimate transporter; Provisional
Probab=100.00 E-value=1.3e-33 Score=268.16 Aligned_cols=380 Identities=13% Similarity=0.106 Sum_probs=256.4
Q ss_pred hhhHHHHHHHHhhhcccccchhHHHHhh-cCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHH
Q 013411 8 SHLFITIFVHCFSTSMVAPAITDVTMSA-VCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT 86 (443)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~ 86 (443)
....+..+++.++........|.+..+. .+..+++.+. .......++..++..+++++.|+++||+|||++++.+.+
T Consensus 25 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~ 102 (438)
T PRK09952 25 LGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGT--LAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVW 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHH
Confidence 3445667777787777666666555442 2111111111 111222345667788999999999999999999999999
Q ss_pred HhHHHHHHHHhccCCchhH--------HHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhh
Q 013411 87 LSIIPLAILAYSRSRNFFY--------AYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGT 158 (443)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 158 (443)
++++++++++++++ ++ .++++|+++|+ +.+...+....++.|++|+++|++..+..+.+..+|.++++
T Consensus 103 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~ 178 (438)
T PRK09952 103 MMGIATALIGLLPS---FSTIGWWAPVLLVTLRAIQGF-AVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST 178 (438)
T ss_pred HHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHHh-hhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 65 58899999999 99999999999999999999999999999999999988886
Q ss_pred hhhh------------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCC
Q 013411 159 ISAR------------FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLP 226 (443)
Q Consensus 159 ~l~~------------~~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (443)
.+.. ..+||.+|++.+++.++ .+......||+|+++++++ +.++.+++.
T Consensus 179 ~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~~~~~~~~------------------~~~~~~~~~ 239 (438)
T PRK09952 179 GLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESAEFEQQQH------------------EQAAAKKRI 239 (438)
T ss_pred HHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHHh------------------hcccccccC
Confidence 5443 25899999988776544 3333345667654322000 000000111
Q ss_pred chhHHHhhhccChhhHHH-HHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 013411 227 SIDDMVHLLKSSPTFSQA-AIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGE 305 (443)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (443)
+..+ .++++++.+.. ....++..+..+....+.|.|+++.+|++...........++...++. ++.|+++||++|
T Consensus 240 ~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~-~~~g~l~Dr~gr 315 (438)
T PRK09952 240 PVIE---ALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTI-PCFAWLADRFGR 315 (438)
T ss_pred CHHH---HHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCc
Confidence 1211 12234443333 334455556667777899999988889988765555556667777777 445899999999
Q ss_pred chHHHHHHHHHHHHHHHHHh---hcc-hhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHH-HHHHH
Q 013411 306 ARLLSFGLLFGCVHMFLYSV---AWS-SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS-FANLV 379 (443)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~ 379 (443)
|+.+..+.++..++...+.. ..+ .+.... ..+.+++.+...+..+++..|.+|++.|+++.|+.+.... +++.+
T Consensus 316 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~ 395 (438)
T PRK09952 316 RRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGF 395 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHH
Confidence 99888776665554433322 112 222222 2333566666777888999999999999999999776654 89999
Q ss_pred hHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHh
Q 013411 380 SPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 380 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (443)
+|.+.+++.+..++. + ...+...+++.+++.+..+..
T Consensus 396 ~p~i~g~l~~~~~~~-----~-~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 396 TPFIAAALVTYFGGS-----W-HSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHhcCCC-----c-hHHHHHHHHHHHHHHHHHHHc
Confidence 999999999864211 1 223444555555555554443
No 27
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=100.00 E-value=2.9e-34 Score=268.80 Aligned_cols=333 Identities=15% Similarity=0.086 Sum_probs=257.2
Q ss_pred hcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccC
Q 013411 21 TSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRS 100 (443)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~ 100 (443)
.....+..|.+ .++++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++
T Consensus 19 ~~~~~~~~~~~--------~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~ 90 (377)
T TIGR00890 19 VYTWTLLAPPL--------GRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADS 90 (377)
T ss_pred HhhhhhHHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHH
Confidence 44455666666 3457888999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh----hchhhHHHHHHHH
Q 013411 101 RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF----ISTSAAFQAATAG 176 (443)
Q Consensus 101 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~ 176 (443)
++.+++.|++.|+ +.+...+.....+.|++| |+|+++.++...+.++|..+++++... .+||+.|++.+++
T Consensus 91 ---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~ 165 (377)
T TIGR00890 91 ---LAALYLTYGLASA-GVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII 165 (377)
T ss_pred ---HHHHHHHHHHHhH-HHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9999999999999 888887888888999987 679999999999999998775544433 3799999999988
Q ss_pred HHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhh
Q 013411 177 SIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADA 256 (443)
Q Consensus 177 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (443)
.++..+..++++||+++++++++ ++.++++.+.++ .+ +++.++...+..++......
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~ 222 (377)
T TIGR00890 166 FLLVIVLGAFLIGYPPGQLIKTN-------------------IEVSVKDYTVWE---ML-RTPQFWVLYLSFFLNAVSGL 222 (377)
T ss_pred HHHHHHHHHHheecCchhccccC-------------------cccchhhhhHHH---HH-cCccHHHHHHHHHHHhHHHH
Confidence 88877766666766543222000 000000011222 22 55666666555555555555
Q ss_pred hhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchh--HH-H
Q 013411 257 GLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSW--VP-Y 333 (443)
Q Consensus 257 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~ 333 (443)
....+.+.|.++ +|.++.+.+...+...+...+++++ .+++.||++||+.+..+..+..++...+...++.. .. .
T Consensus 223 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T TIGR00890 223 LLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPF-LGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLA 300 (377)
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHH
Confidence 555666777655 5888888899999999999999944 48999999999999888888888877666655322 12 1
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 334 AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
...+.+++.+...+...++..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..
T Consensus 301 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 358 (377)
T TIGR00890 301 TVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI 358 (377)
T ss_pred HHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2344566666666777888999999999999999999999999999999999999875
No 28
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.1e-34 Score=262.37 Aligned_cols=370 Identities=18% Similarity=0.204 Sum_probs=273.2
Q ss_pred HHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhh
Q 013411 49 LSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLA 128 (443)
Q Consensus 49 ~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 128 (443)
.-+.+.+++.+|.++|++..|+++||+|||..+.++.++..++.+++.++...+.+++++++|++.|+ ..+........
T Consensus 61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl-~~gl~~~~~pm 139 (485)
T KOG0569|consen 61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGL-ACGLSTGLVPM 139 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 35788999999999999999999999999999999999998888888877655559999999999999 99999999999
Q ss_pred hhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhh------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCc--------
Q 013411 129 YVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR------FISTSAAFQAATAGSIISAVYMRIFLPESVRD-------- 194 (443)
Q Consensus 129 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~------~~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~-------- 194 (443)
|+.|..|++.||......+.+..+|.++|..++. .-.|++.+....+++++..+ ...++||||+.
T Consensus 140 yl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~-~l~~~PESPk~Ll~~k~~~ 218 (485)
T KOG0569|consen 140 YLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA-LLPFLPESPKYLLIKKGDE 218 (485)
T ss_pred HHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH-HHhcCCCCcchHHHHcCCH
Confidence 9999999999999999999999999999866553 23688988888888777554 55899999973
Q ss_pred cccccccccchhhhhhhh---hhhhhh---hhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhh-hhhHHHHHHHHH
Q 013411 195 EDLYTPILSSKAEISASC---EESTKK---LQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLAD-AGLQGSMMYYLK 267 (443)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 267 (443)
+++++.++..+++++.++ ++.++. +.++++..++++.++.-..++.....+...+...+.. .....+...+++
T Consensus 219 ~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~ 298 (485)
T KOG0569|consen 219 EEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFK 298 (485)
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHH
Confidence 122344554444332111 111111 1112244456665532211222223333333333332 223333334444
Q ss_pred HHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhc----c--hhHHHH----HHH
Q 013411 268 AKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW----S--SWVPYA----AAV 337 (443)
Q Consensus 268 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~----~~~ 337 (443)
+ .|++..++.+.....++...+.. +++.++.||.|||++++.+..++.+..+++.... . .|..+. .++
T Consensus 299 ~-aG~~~~~a~~an~~~g~v~~~~t-~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~ 376 (485)
T KOG0569|consen 299 T-AGFTPEEAQYANLGIGIVNLLST-LVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFL 376 (485)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4 49999999999999999999999 6668999999999999999999888876665432 1 233322 222
Q ss_pred HHHhhhh-hhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHH
Q 013411 338 FSILSVF-SHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAF 416 (443)
Q Consensus 338 ~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (443)
+.+.++. ..|..+-+.+|++|++.|+.++++...+.++.+++-...+.++.+..|. ..++...+.+.+..
T Consensus 377 ~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~---------~~filF~i~~~~~~ 447 (485)
T KOG0569|consen 377 FIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP---------YVFILFVIPLAIFL 447 (485)
T ss_pred HHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------hhhHHHHHHHHHHH
Confidence 3333433 4689999999999999999999999999999999999999999998642 46777777777888
Q ss_pred HHHHHhhcCCCCCCCCCCcc
Q 013411 417 IQSIMIRVAPPLPVSSQRVS 436 (443)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~ 436 (443)
++.++.. ||||+|+.
T Consensus 448 i~~~~~l-----PETkgr~~ 462 (485)
T KOG0569|consen 448 IYLYRYL-----PETKGRTP 462 (485)
T ss_pred HHHHHhC-----cccCCCCH
Confidence 8887777 77776653
No 29
>PRK12307 putative sialic acid transporter; Provisional
Probab=100.00 E-value=1.6e-34 Score=274.91 Aligned_cols=355 Identities=15% Similarity=0.169 Sum_probs=255.2
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHH
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT 86 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~ 86 (443)
....++..+.+.++.....+..|.+. ++++.+..+.+++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~ 91 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIK--------ADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 34456666667777777777777763 4578888899999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh---
Q 013411 87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF--- 163 (443)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~--- 163 (443)
+.+++.++++++++ ++.++++|+++|+ +.+...+....++.|++|+|+|+++.++...+..+|.++++.+...
T Consensus 92 ~~~~~~~~~~~~~~---~~~l~~~r~l~G~-g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~ 167 (426)
T PRK12307 92 AYSVGTGLSGLASG---VIMLTLSRFIVGM-GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE 167 (426)
T ss_pred HHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence 99999999999999 9999999999999 8888899999999999999999999999999999999998877654
Q ss_pred -hchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhH
Q 013411 164 -ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFS 242 (443)
Q Consensus 164 -~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
.+||+.|++.....++ .+......||++++++++. +++++ +.+...+....++++ .+ +++.++
T Consensus 168 ~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~---~~-~~~~~~ 231 (426)
T PRK12307 168 AYGWRAAFFVGLLPVLL-VIYIRARAPESKEWEEAKL----------SGKGK-HSQSAWSVFSLSMKG---LF-NRAQFP 231 (426)
T ss_pred cCCHHHHHHHHHHHHHH-HHHHHHHCCCChHHHHhhh----------hcccc-ccccchhhhhHHHHH---HH-hhchHH
Confidence 4899999875543322 2222223444432211000 00000 000000000012222 23 445444
Q ss_pred HHHHHH---HHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHH
Q 013411 243 QAAIVA---FLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVH 319 (443)
Q Consensus 243 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 319 (443)
...... +...........++|.|+++. |.++.+.+...+...++.+++.+ ..+++.||++||+.+..+.++..+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~~~~~~~~~~~~~ 309 (426)
T PRK12307 232 LTLCVFIVLFSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNI-VWGLCADRIGLKKTFSIGLLMSFLF 309 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHH
Confidence 333222 222223334567889998874 99999999999999999999995 4579999999999988887776665
Q ss_pred HHHHHhhcc-hhHHHHHHHHHHh--hhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 320 MFLYSVAWS-SWVPYAAAVFSIL--SVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 320 ~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
...+..... ........+++.+ .....+....++.|.+|++.||+++|+.+...++++.++|.+.|++.+..
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~ 384 (426)
T PRK12307 310 IFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM 384 (426)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 554443322 2222222333332 22334556678899999999999999999999999999999999999875
No 30
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=100.00 E-value=1.9e-33 Score=265.47 Aligned_cols=343 Identities=14% Similarity=0.105 Sum_probs=263.8
Q ss_pred HHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHH
Q 013411 11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII 90 (443)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i 90 (443)
.+..++..++.++..|.+|.+.+ +++.+..+.++..+.+.++..+++++.|+++||+||||++..+..+.++
T Consensus 19 ~l~~~~~~~~~~~~~~~~~~~~~--------~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 90 (406)
T PRK15402 19 VLFEFATYIANDMIQPGMLAVVE--------DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL 90 (406)
T ss_pred HHHHHHHHhhhhhHhcchHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 33344445577888899888744 4677888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----ch
Q 013411 91 PLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----ST 166 (443)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w 166 (443)
+.+.+.++++ ++.+++.|+++|+ +.+...+...+++.|++|+++|.+.+++......+|..+||.+++.+ +|
T Consensus 91 ~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w 166 (406)
T PRK15402 91 TCLAILLAQS---IEQFTLLRFLQGI-GLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPW 166 (406)
T ss_pred HHHHHHHHcc---HHHHHHHHHHHHh-HhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 9999999998 9999999999999 88888888999999999999999999999888888888888887654 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHH
Q 013411 167 SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAI 246 (443)
Q Consensus 167 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (443)
|+.|++.+++.++..+...+..||++++++++ .+ ..+..+..+...++|.++...+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~----~~~~~~~~~~~~~~~~~~~~~~ 222 (406)
T PRK15402 167 RGMFVLFAALAALSFFGLWRAMPETAGRVGEK--------------------LS----LKELGRDYKLVLKNRRFVAGAL 222 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCCcccccc--------------------cc----HHHHHHHHHHHHcCcHHHHHHH
Confidence 99999988888776666656677764332200 00 0001111122336677776666
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhh
Q 013411 247 VAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVA 326 (443)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (443)
..++..........+.|.|+++.+|+++.+.+.......++..++.++ .+++.||+++|+.+..+..+..++...+...
T Consensus 223 ~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~-~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~ 301 (406)
T PRK15402 223 ALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLT-LARLTSRRPLRSLIRMGLWPMVAGLLLAALA 301 (406)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555555566667888888888999999888887777788888844 4799999999999888888777766665543
Q ss_pred c-----chhH-HHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 327 W-----SSWV-PYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 327 ~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
. +.+. .....+.+++.+...+..+...... +++++|++.+..+....++..+|+.+.+.+++..
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 371 (406)
T PRK15402 302 TVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG 371 (406)
T ss_pred HHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 2 2222 2234556777777666666655444 4489999999999999999999999999988774
No 31
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=100.00 E-value=1.3e-33 Score=264.31 Aligned_cols=348 Identities=13% Similarity=0.115 Sum_probs=257.3
Q ss_pred CcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHH
Q 013411 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP 84 (443)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~ 84 (443)
++.+.+++..++..++..+.....+.+..+ ++.+..+.+++.+.+.+++.+.++++|+++||+||||+++.+
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~ 74 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIALLKE--------LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIA 74 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHH
Confidence 456778889999999877776666666443 456667889999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh
Q 013411 85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI 164 (443)
Q Consensus 85 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~ 164 (443)
.++.+++.+++.++.+ . ++.|+++|+ +.+...|+..+++.|++|+|+|++++++.+....+|.++||.+++.+
T Consensus 75 ~~~~~~~~~~~~~~~~---~---~~~r~l~G~-~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l 147 (393)
T PRK11195 75 NGIKLLGCLLMLFGIH---P---LLAYGLVGI-GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL 147 (393)
T ss_pred HHHHHHHHHHHHHHHH---H---HHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877666 4 788999999 99999999999999999999999999999999999999999999876
Q ss_pred ---chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhh
Q 013411 165 ---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTF 241 (443)
Q Consensus 165 ---~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (443)
.|+..+.+.+...++. .+..+.+||+++++++.+ . +. .... .+.++..+.++++|.+
T Consensus 148 ~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~-------~---~~--~~~~-------~~~~~~~~~l~~~~~~ 207 (393)
T PRK11195 148 ADPHAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQS-------W---NP--IALL-------RDFFHACRVLWRDKLG 207 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccC-------C---CH--HHHH-------HHHHHHHHHHHhCchh
Confidence 3455555555443333 334467787654322100 0 00 0000 0011111223355655
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Q 013411 242 SQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMF 321 (443)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (443)
+.......+............|.|+++.+|.++.+.|...+..+++.+++.+.. +++.||.++++.+..+.. .++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~-~~l~~~~~~~~~~~~g~~-~~~~~~ 285 (393)
T PRK11195 208 RFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAA-ARLVTLETVLRVLPAGIL-MGLVVL 285 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH-HHHhcCCcccchHHHHHH-HHHHHH
Confidence 555544444444455566677888988899999999999999999999999555 799999888887777653 333333
Q ss_pred HHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCc-chhHHhHHhHHHHHHHHHhHHhHHHHHH
Q 013411 322 LYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNE-QGKAQGCISGICSFANLVSPLAFSPLTA 389 (443)
Q Consensus 322 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~-~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 389 (443)
.+...++.+.... ..+.|++.+...+..++..++..|++. +|++.++.+..++++..++..+.+.+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 355 (393)
T PRK11195 286 LMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK 355 (393)
T ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333 445677777777888888888766554 7999999999999999999999986643
No 32
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=100.00 E-value=1.3e-33 Score=269.75 Aligned_cols=363 Identities=13% Similarity=0.070 Sum_probs=251.3
Q ss_pred hhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccC-CchhHHHHHHHHhhhhhccchh
Q 013411 44 SLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRS-RNFFYAYYVLRTLTAMVCEGSI 122 (443)
Q Consensus 44 ~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~ 122 (443)
+.+..+.|++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+++++++. ..+++.+++.|++.|+ +.+..
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi-~~g~~ 137 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW-FQGMG 137 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHH-HHhcc
Confidence 777889999999999999999999999999999999999999999999988887641 1117889999999999 88888
Q ss_pred hhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhh-hhhhhhh----hhchhhHHHHHHHHHHHHHHHHHHhccCCCCcccc
Q 013411 123 HCLSLAYVADNVPPGRRASVFGIFSGIVSGAFV-CGTISAR----FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDL 197 (443)
Q Consensus 123 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~l~~----~~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~ 197 (443)
.+.....+.|++|+++|++++++.+.+..+|.. .+|+++. ..+||+.|++.+++.++..++..+++||+|++...
T Consensus 138 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (452)
T PRK11273 138 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGL 217 (452)
T ss_pred chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCC
Confidence 888888899999999999999999999998864 4555432 23899999999888777767777888887654221
Q ss_pred ccccccchhhhhhhhhhhhhhhhhcccCCchhHH-HhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhh
Q 013411 198 YTPILSSKAEISASCEESTKKLQVFKRLPSIDDM-VHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQ 276 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 276 (443)
.+. ++.++ +..++ .++.+.++.+.++. .+...+++.++...+..++.....+....++|.|+++..|++..+
T Consensus 218 ~~~-~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~ 290 (452)
T PRK11273 218 PPI-EEYKN--DYPDD----YNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK 290 (452)
T ss_pred CCh-hhhhh--ccccc----cccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 000 00000 00000 00000111123332 223447788888888877777777788889999999988999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc--ccchHH-HHHHHHHHHHHHHHHhhc--chhHHHH-HHHHHHhhhhhhhHHH
Q 013411 277 FADLMVIAGIAGTISQLIMMPVLAPTV--GEARLL-SFGLLFGCVHMFLYSVAW--SSWVPYA-AAVFSILSVFSHPCLR 350 (443)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 350 (443)
.+.......++.+++. ++.|+++||+ +||+.. .....+..++...+.... +.+.... ...++.......+...
T Consensus 291 ~~~~~~~~~~~~~~g~-~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 369 (452)
T PRK11273 291 SSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIG 369 (452)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHH
Confidence 8888888888888888 4558999998 444432 222222233332222221 2222222 2222332222223344
Q ss_pred HHHHhcCCCCcchhHHhHHhHHHHHHHHH-hHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 351 TIVSKQVASNEQGKAQGCISGICSFANLV-SPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 351 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
.+..|.+|++.||++.|+.+...++|+.+ +|.+.|.+.|+.+ + ...+.+.+..++++.+......
T Consensus 370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~-------~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-W-------DGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-c-------hHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999888765 7999999999863 1 2345555555565555555443
No 33
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=100.00 E-value=3e-33 Score=261.84 Aligned_cols=361 Identities=14% Similarity=0.102 Sum_probs=269.3
Q ss_pred HHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHH-HHHHhH
Q 013411 11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV-PITLSI 89 (443)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~-~~~~~~ 89 (443)
.+..++..++.++..|.+|.+.++ +++.+..+.|++.+++.+...+.+++.|+++||+||||.++. +.....
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~-------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~ 75 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSE-------EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAA 75 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHc-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456788888999999999998654 467888899999999999999999999999999999987654 556666
Q ss_pred HHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhH--HHHHHHHhhhhhhhhhhhhhhh---
Q 013411 90 IPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASV--FGIFSGIVSGAFVCGTISARFI--- 164 (443)
Q Consensus 90 i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~l~~~~--- 164 (443)
++.++++++++ ++.+++.|++.|. ..+...|...+++.|+.|+++|++. .+......++|.++||.+++.+
T Consensus 76 ~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~ 151 (375)
T TIGR00899 76 LACLLFAWNRN---YFLLLVLGVLLSS-FASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG 151 (375)
T ss_pred HHHHHHHhcch---HHHHHHHHHHHHh-hhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh
Confidence 77788888888 8999999999997 7777888888999999987777754 5777778888888888887654
Q ss_pred -chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHH
Q 013411 165 -STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQ 243 (443)
Q Consensus 165 -~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (443)
+||+.|++.+.+.++..+..++++||+|++++++ +++.+.++ ..+++.++.
T Consensus 152 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~----~~~~~~~~~ 203 (375)
T TIGR00899 152 FGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA------------------------LTRLEVRG----LLASRDTRL 203 (375)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccc------------------------cCcchhhh----hhcCcchHH
Confidence 8999999998887777666667788866533210 00001111 113445554
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Q 013411 244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY 323 (443)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 323 (443)
.....++..........+.|.|+++.+|.++.+.+...........++. +..+++.||++||+.+..+.....+....+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~ 282 (375)
T TIGR00899 204 LFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFM-LLAGYLIKRFGKRRLMLLAALAGVAFYTGL 282 (375)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 4444444444444556678889888889999999988877777777777 455799999999998888777666655555
Q ss_pred HhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccch
Q 013411 324 SVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPG 402 (443)
Q Consensus 324 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 402 (443)
...++.+.... ..+.+++.+...+....+..|..|+ +++++.|+.+...++|..++|.+.|.+.+..+ + .
T Consensus 283 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~-------~ 353 (375)
T TIGR00899 283 AADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS-Y-------H 353 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-------h
Confidence 55445444433 4445677777778888888998885 56799999999999999999999999998742 1 2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 013411 403 FSIMCIGFVSMTAFIQSI 420 (443)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~ 420 (443)
..+.+.+++.+++.....
T Consensus 354 ~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 354 AVYWFAIVMLIVALFCLL 371 (375)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 345555555555555543
No 34
>PRK12382 putative transporter; Provisional
Probab=100.00 E-value=2.5e-33 Score=263.54 Aligned_cols=365 Identities=17% Similarity=0.157 Sum_probs=262.6
Q ss_pred CCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHH
Q 013411 4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV 83 (443)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~ 83 (443)
++.+..+.+..++..++.++..|.+|.+..+ |++.|..+.|++.+++.++..++++++|+++||+||||+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~-------~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~ 86 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHH-------DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQ 86 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHH-------hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHH
Confidence 3445566778888888999999999987654 467888999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHH---hccC--CchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhh
Q 013411 84 PITLSIIPLAILA---YSRS--RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGT 158 (443)
Q Consensus 84 ~~~~~~i~~~~~~---~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 158 (443)
+.+...++.+... ..++ ..+++.+++.|+++|+ +.+...+...+++.|++|+|+|++++++.+.+...|..+||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~ 165 (392)
T PRK12382 87 GMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGF-GESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGA 165 (392)
T ss_pred HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHH
Confidence 8887776654332 2211 1127899999999999 88888888899999999999999999999999999999998
Q ss_pred hhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhh
Q 013411 159 ISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHL 234 (443)
Q Consensus 159 ~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (443)
++++.+ +||..+.+.....++... .....||.+++++ ++++.++..+.
T Consensus 166 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------------------------~~~~~~~~~~~ 217 (392)
T PRK12382 166 PLGLLLHSHFGFAALALTTMVLPLLAWA-FNGTVRKVPAHAG---------------------------ERPSLWSVVGL 217 (392)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHHHH-HHHhccCCCCCcc---------------------------cCchHHHHHHH
Confidence 888754 788776655444333221 1122222211100 00112222211
Q ss_pred hccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHH
Q 013411 235 LKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLL 314 (443)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 314 (443)
+++ +. ...++..........+.|.|+++. |++. .+......+++.++++++. +++.||+++|+.+..+..
T Consensus 218 ~~~-~~-----~~~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~-g~l~~r~g~~~~~~~~~~ 287 (392)
T PRK12382 218 IWK-PG-----LGLALQGVGFAVIGTFVSLYFASK-GWAM--AGFTLTAFGGAFVLMRVLF-GWMPDRFGGVKVAIVSLL 287 (392)
T ss_pred HHH-hH-----HHHHHHHHHHhHHHHHHHHHHHhc-CCch--hHHHHHHHHHHHHHHHHHH-HHHHHhcCCCeehHHHHH
Confidence 111 11 122223334445566778888764 6654 4556666777778888444 799999999999988888
Q ss_pred HHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhc
Q 013411 315 FGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLS 393 (443)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 393 (443)
+..++..++...++.+.... ..+.+++.+...+...+...+.+|+++||++.|+.+....+|..++|.+.|.+.|+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g- 366 (392)
T PRK12382 288 VETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG- 366 (392)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 88888777766665544433 4555777777788888888999999999999999999999999999999999999853
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHh
Q 013411 394 DRAPFNFPGFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (443)
+ ...+.+.+++.+++....+..
T Consensus 367 ~-------~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 367 Y-------PSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred c-------hHHHHHHHHHHHHHHHHHHhh
Confidence 1 335555666666665555443
No 35
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=100.00 E-value=4.4e-35 Score=271.80 Aligned_cols=343 Identities=25% Similarity=0.352 Sum_probs=266.4
Q ss_pred hHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhH
Q 013411 10 LFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSI 89 (443)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~ 89 (443)
+++..++..++..+..+.+|.+. .++++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus 1 L~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~ 73 (352)
T PF07690_consen 1 LFLAFFLSGFGFSIISPALPLYL-------AEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFA 73 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HH-------HCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH-------HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhh
Confidence 35677888888889999998433 33477888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----c
Q 013411 90 IPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----S 165 (443)
Q Consensus 90 i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~ 165 (443)
++.++..++++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+...++|.++||.+++.+ +
T Consensus 74 ~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~ 149 (352)
T PF07690_consen 74 LGSLLLAFASN---FWLLLIARFLLGI-GSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG 149 (352)
T ss_dssp HHHHHHHHHCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH
T ss_pred hHHHHhhhhhh---HHHHhhhcccccc-ccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc
Confidence 99666667677 7899999999999 88999999999999999999999999999999999999999998875 7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHH
Q 013411 166 TSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAA 245 (443)
Q Consensus 166 w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (443)
||+.|++.+++.++..++...+++++++++++++.. +++++++.++++.++.+++++.++...
T Consensus 150 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (352)
T PF07690_consen 150 WRWAFLISAILSLIAAILFILFLPEPPPPRERESPK-----------------ESESKKPKPLKPGFKSLFKNPVLWILL 212 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHHCCC---STTTT--SST-----------------TTT--HHHCCCH-CTHHHHHHCCHHHH
T ss_pred cccccccccchhhhhhhhHhhhhhhccccccccccc-----------------ccccccccccccccccccccchhhhhh
Confidence 999999999998887765556666655544311000 000001111222222333566565455
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHcCcC-hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH
Q 013411 246 IVAFLSNLADAGLQGSMMYYLKAKFHFN-KNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYS 324 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (443)
...++..+.......+.|.|+++.+|++ ..+.+......++...++..+. +++.||+++++..........+....+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (352)
T PF07690_consen 213 IAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLA-GRLSDRFGRRRRLLIAILLLILGALGLL 291 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 5555665667778889999988888999 7888999999999999998444 7999999988777776666666655554
Q ss_pred hhcc----hhHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhH
Q 013411 325 VAWS----SWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSP 381 (443)
Q Consensus 325 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~ 381 (443)
.... .+......+.+++.+...+...++..+.+|++++|++.|+.+...+++..++|
T Consensus 292 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 292 LLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp CSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4332 23333466678888889999999999999999999999999999999999987
No 36
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=100.00 E-value=2.2e-33 Score=265.77 Aligned_cols=379 Identities=15% Similarity=0.171 Sum_probs=280.0
Q ss_pred CCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHH
Q 013411 4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV 83 (443)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~ 83 (443)
+++...+++..++..++.++..|.+|.+.++. + .++.+....+.|++.+++.++..++++++|+++||+|||+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 89 (408)
T PRK09874 13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQL-G--VTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLR 89 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh-C--CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHH
Confidence 34455677888888999999999999997662 1 11111112356999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh
Q 013411 84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF 163 (443)
Q Consensus 84 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~ 163 (443)
+.++.+++.+++.++++ ++.+++.|++.|+ +.+ ..+...+++.|++|+++|++++++......+|..++|.+++.
T Consensus 90 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 164 (408)
T PRK09874 90 SALGMGIVMVLMGLAQN---IWQFLILRALLGL-LGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGL 164 (408)
T ss_pred HHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-hhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888 9999999999998 655 457788899999999999999999999999999999888875
Q ss_pred h----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccCh
Q 013411 164 I----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSP 239 (443)
Q Consensus 164 ~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (443)
+ +||+.|++.+++.++..+...+++||++++.+++ ++.+.++..+.+++++
T Consensus 165 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~ 219 (408)
T PRK09874 165 LADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK-------------------------EMLHMREVVTSLKNPK 219 (408)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch-------------------------hhhHHHHHHHhCcCCc
Confidence 4 8999999998887777666667777754322200 0001122233343333
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChh---hHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Q 013411 240 TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKN---QFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFG 316 (443)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 316 (443)
..+......+...........+++.|..+..+.... ..+.+....+++.+++.+.. +++.||++||+.+..+..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~-g~l~dr~g~~~~~~~~~~~~ 298 (408)
T PRK09874 220 LVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRL-GKLGDRIGPEKILITALIFS 298 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccccchhHHHHHHHH
Confidence 333333333444444455566778888775332221 24555566677777777444 79999999999998888887
Q ss_pred HHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCC
Q 013411 317 CVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDR 395 (443)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 395 (443)
.++.+.....++.+.... ..+.+++.+...+...+...+..|++++|+.++..+....+|..++|.+.|.+.+..+ +
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~- 376 (408)
T PRK09874 299 VLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-F- 376 (408)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-h-
Confidence 777766666555554444 4556888888889999999999999999999999999999999999999999988742 1
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHhhc
Q 013411 396 APFNFPGFSIMCIGFVSMTAFIQSIMIRV 424 (443)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (443)
...+...+++.+++.+..+...+
T Consensus 377 ------~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 377 ------RAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666555443
No 37
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=100.00 E-value=2.6e-33 Score=263.15 Aligned_cols=345 Identities=18% Similarity=0.172 Sum_probs=268.0
Q ss_pred CCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhH
Q 013411 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT 82 (443)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~ 82 (443)
+++....+....++..++..+..|.+|.+.+ +++.+..+.|++.+.+.++..+++++.|+++||+|||+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 74 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAFPEIAA--------DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLL 74 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHH
Confidence 3444445555566677888999999998844 47788889999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhh
Q 013411 83 VPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR 162 (443)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~ 162 (443)
.+.++.+++.+.+.++++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..+||.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 150 (385)
T TIGR00710 75 LGLFIFALSSLGLALSNN---IETLLVLRFVQAF-GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG 150 (385)
T ss_pred HHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHc-chhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 9999999999999 989999999999999999999999999999999999999988887
Q ss_pred hh----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccC
Q 013411 163 FI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS 238 (443)
Q Consensus 163 ~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (443)
.+ +||+.|++.++..++..+...+..||++++++++ +.+...++..+ ..++
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~-~~~~ 205 (385)
T TIGR00710 151 YILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI------------------------QISTYFETFLL-LLKS 205 (385)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC------------------------CHHHHHHHHHH-HHcC
Confidence 54 8999999988887776666666777765433210 00001112222 2256
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH
Q 013411 239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV 318 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 318 (443)
|.++...+..............+.|.++++.+|.++.+.+.+.....++.+++.++. +++.||+++|+.+..+..+..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~~~~ 284 (385)
T TIGR00710 206 KMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLN-GRFIKKWGAKSLLRMGLILFAV 284 (385)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHH
Confidence 666666665555555666677778889988889999999999999999999999554 7999999999988888777766
Q ss_pred HHHHHHhhc----chh-HHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHH
Q 013411 319 HMFLYSVAW----SSW-VPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSP 386 (443)
Q Consensus 319 ~~~~~~~~~----~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 386 (443)
+..++.... +.+ .... ..+.+++.+...+.......|..| ++++++.++.+.....++.+.+.+.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~ 357 (385)
T TIGR00710 285 SAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSL 357 (385)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 655554432 112 2222 344567777778888888888887 689999999998887655565555553
No 38
>PRK03699 putative transporter; Provisional
Probab=100.00 E-value=2.2e-33 Score=263.59 Aligned_cols=341 Identities=16% Similarity=0.093 Sum_probs=262.4
Q ss_pred hhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHh
Q 013411 9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLS 88 (443)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~ 88 (443)
..++..++.........+.+|.+. ++++.|..+.|++.+.+.++..+++++.|++.||+|||+++..+.++.
T Consensus 11 ~~~~~~~~~~~~~~~~g~~~~~i~--------~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~ 82 (394)
T PRK03699 11 ISFLSYALTGALVIVTGMVMGPIA--------EYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM 82 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445556666666667777778874 447888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh-----
Q 013411 89 IIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF----- 163 (443)
Q Consensus 89 ~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----- 163 (443)
+++.++++++++ ++.+++.|+++|+ +.+...+...+++.|++|+++|+++++..+....+|..++|.+.+.
T Consensus 83 ~i~~~l~~~~~~---~~~~~~~~~l~G~-~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 158 (394)
T PRK03699 83 ILAVAGLMFSHS---LALFSIAMFVLGV-VSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS 158 (394)
T ss_pred HHHHHHHHHcch---HHHHHHHHHHHHH-hhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999988 9999999999999 8888888889999999999999999999888888888888876653
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHH
Q 013411 164 ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQ 243 (443)
Q Consensus 164 ~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (443)
.+||+.|.+.+++.++..++. ++ ++.|+.+++++ + ++ + +..++. .++.++.
T Consensus 159 ~gw~~~f~~~~~~~~~~~~~~-~~-~~~p~~~~~~~------------~------~~-~---~~~~~~-----~~~~~~~ 209 (394)
T PRK03699 159 IEWYWVYACIGLVYVAIFILT-LF-SEFPALGKHAP------------K------AD-K---PVAKEK-----WGIGVLF 209 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-Hh-cCCccccccCc------------c------cc-C---cccccc-----CChHHHH
Confidence 389999998887776654433 22 22222111000 0 00 0 000110 1344555
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Q 013411 244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY 323 (443)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 323 (443)
..+..++..........+.|.|+++.+|+|+.+.+.+.+...++..++.+ ..+++.||+++|+.+.....+..+...++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 288 (394)
T PRK03699 210 LAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMW-IFSFIVRFFDLQRILTVLAGLALVLMYLF 288 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHH-HHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 55566666666777888999999998999999999999999999999994 55899999999998887777766666555
Q ss_pred HhhcchhHH-HHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhh
Q 013411 324 SVAWSSWVP-YAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFL 392 (443)
Q Consensus 324 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 392 (443)
...++.+.. ...++.+++.+..++...+...+..| +.+++..|......++|..++|.+.|++.+..+
T Consensus 289 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g 357 (394)
T PRK03699 289 VNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG 357 (394)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Confidence 555544333 33455677677777887888888776 556788899999999999999999999999853
No 39
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=100.00 E-value=5.3e-34 Score=276.09 Aligned_cols=369 Identities=14% Similarity=0.140 Sum_probs=288.6
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHH
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT 86 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~ 86 (443)
...+++..++..++..+..+.+|.+.++ ++.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 75 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGD--------LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTF 75 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHH
Confidence 4456777888888889999999988544 67777889999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh--
Q 013411 87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-- 164 (443)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-- 164 (443)
+..++.++++++++ ++.+++.|+++|+ +.+...+...+++.|++|+++|++++++......+|..+||.+++.+
T Consensus 76 ~~~~~~~~~~~~~~---~~~l~~~~~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 151 (485)
T TIGR00711 76 AFTLGSLLCGVAPN---LELMIIFRVIQGF-GGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE 151 (485)
T ss_pred HHHHHHHHHhCcCC---HHHHHHHHHHHHh-hhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence 99999999999999 9999999999999 88988999999999999999999999999999999999999888765
Q ss_pred --chhhHHHHHHHHHHHHHHHHHHhccCCCCcccc-ccccc----------------cchhhhhhhhhhhh---------
Q 013411 165 --STSAAFQAATAGSIISAVYMRIFLPESVRDEDL-YTPIL----------------SSKAEISASCEEST--------- 216 (443)
Q Consensus 165 --~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~----------------~~~~~~~~~~~~~~--------- 216 (443)
+||+.|++.+.+.++..+...+..||+++++++ .|... +.+++.+.+.....
T Consensus 152 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (485)
T TIGR00711 152 NYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVA 231 (485)
T ss_pred CcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHH
Confidence 899999999888877777666777775443221 11110 00000000000000
Q ss_pred ---hhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHH
Q 013411 217 ---KKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQL 293 (443)
Q Consensus 217 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 293 (443)
...++.+++++..+ .+.+ ++|.++...+..++..+.......+.|.|+++.+|+++.+.+.......++..++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 309 (485)
T TIGR00711 232 IIAFVVWELTDDNPLVD-LRLF-KYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSP 309 (485)
T ss_pred HHHHHHHHHcCCCCccC-HHHH-cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00001111112211 1223 566777777777777777788888999999999999999999999999999999995
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHHHhh--c--chhHHH-HHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhH
Q 013411 294 IMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVA--W--SSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGC 368 (443)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 368 (443)
+ .+++.||++||+.+..+..+..++...+... + +.+... ...+.+++.+...+.......+.+|++++|++.|+
T Consensus 310 ~-~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~ 388 (485)
T TIGR00711 310 I-AGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSL 388 (485)
T ss_pred H-HHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHH
Confidence 4 4799999999999998888888877766521 1 222222 35566788887777778888888999999999999
Q ss_pred HhHHHHHHHHHhHHhHHHHHHh
Q 013411 369 ISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 369 ~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
.+..+.+|+.+|+.+.+.+.++
T Consensus 389 ~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 389 SNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 40
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-33 Score=249.18 Aligned_cols=375 Identities=14% Similarity=0.127 Sum_probs=303.4
Q ss_pred CcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHH
Q 013411 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP 84 (443)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~ 84 (443)
|+++.-.+...+++..+.+..|+-+.+ ++|+++|..|.+++.++..+...+..++.|.+.||+|.|+...++
T Consensus 14 ~~L~~S~~af~v~F~VW~l~s~l~~~i--------~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s 85 (417)
T COG2223 14 RNLWLSTLAFDVGFMVWTLFSPLGVFI--------KSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILS 85 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--------ccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHH
Confidence 344444555556666666666666666 467899999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhh----hhhhhh
Q 013411 85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAF----VCGTIS 160 (443)
Q Consensus 85 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~----~~g~~l 160 (443)
.++..+-.+..+++.+.++++.+++.+.+.|+ + |....+...++++++|||++|.++|+.. ..++|. .++|.+
T Consensus 86 ~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~-~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v 162 (417)
T COG2223 86 MLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL-A-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV 162 (417)
T ss_pred HHHHHHHHHHHHHHccCCchHHHHHHHHHHhc-c-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence 99999999999999886667899999999998 5 5556889999999999999999999998 666664 456777
Q ss_pred hhhhc---hhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhcc
Q 013411 161 ARFIS---TSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKS 237 (443)
Q Consensus 161 ~~~~~---w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (443)
....+ ||..-.+..+..++..+..++...|.|+.+.+. ++.. + ..++.+.+
T Consensus 163 ~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~-----------------------~~~~-~--~~~~~v~~ 216 (417)
T COG2223 163 AVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV-----------------------KPQL-P--AQLKAVFS 216 (417)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc-----------------------cccc-h--hHHHHHhc
Confidence 77778 998888888887887888888888877643210 0000 0 22333447
Q ss_pred ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Q 013411 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC 317 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (443)
+++.|.+.+.++....++.++..++|.|++++||.++.++|.........+.+.+ ..+|+++||+|.+|.+...+..++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~R-p~GG~LsDR~Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALAR-PLGGWLSDRIGGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHH-hccchhhhhccchhHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999 677999999999999999999998
Q ss_pred HHHHHHHhhc-------chhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHH
Q 013411 318 VHMFLYSVAW-------SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTA 389 (443)
Q Consensus 318 ~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 389 (443)
++........ +.+.... .+...++.+..+...+.++...+| ++.|.+.|+....+.+|+..-|...|...+
T Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~ 374 (417)
T COG2223 296 LAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLD 374 (417)
T ss_pred HHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHH
Confidence 8888877764 1222222 344566777778888888888888 588999999999999999999999999999
Q ss_pred hhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhhcC
Q 013411 390 LFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIRVA 425 (443)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
..+++ ...+++...+.+.+.+..+...++
T Consensus 375 ~tg~~-------~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 375 LTGSY-------TGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred hcccH-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 97533 345666777777777766655433
No 41
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=100.00 E-value=1.3e-33 Score=273.07 Aligned_cols=396 Identities=15% Similarity=0.109 Sum_probs=265.4
Q ss_pred HHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHH
Q 013411 16 VHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAIL 95 (443)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~ 95 (443)
+..++.....+.+|....+..-....+.+.+..+.|++.+++.++..++++++|+++||+|||++++.+.++..++.+++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 118 (481)
T TIGR00879 39 MFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILM 118 (481)
T ss_pred hcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34445566667777666552111122234568899999999999999999999999999999999999999999999998
Q ss_pred HhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhh---hh----hchhh
Q 013411 96 AYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA---RF----ISTSA 168 (443)
Q Consensus 96 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~---~~----~~w~~ 168 (443)
.+..+...++.+++.|+++|+ +.+...+...+++.|++|+++|++++++.+.+..+|.++++.++ .. .+||+
T Consensus 119 ~~~~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~ 197 (481)
T TIGR00879 119 GLAAFALSVEMLIVGRVLLGI-GVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRI 197 (481)
T ss_pred HHhccccchHHHHHHHHHHHh-hhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHH
Confidence 766553336789999999999 99999999999999999999999999999999999999999998 33 48999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcccccccccc---c-hh---hhhhhhhh--------hhhhhhhcccCCchhHHHh
Q 013411 169 AFQAATAGSIISAVYMRIFLPESVRDEDLYTPILS---S-KA---EISASCEE--------STKKLQVFKRLPSIDDMVH 233 (443)
Q Consensus 169 ~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~-~~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 233 (443)
.|++.++..++ .+...+++||+|+....++..++ . .+ +...+.+. .....+.+..+..+++.++
T Consensus 198 ~f~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (481)
T TIGR00879 198 PLGLQLIPAGL-LFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFS 276 (481)
T ss_pred HHHHHHHHHHH-HHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHh
Confidence 99996665554 44455778888652111000000 0 00 00000000 0000001111122334333
Q ss_pred hhcc--ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHH
Q 013411 234 LLKS--SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSF 311 (443)
Q Consensus 234 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 311 (443)
..++ ++.++...+..+...........+.|.+.+ .+|++..+.+.......++.+++.+ +.+++.||++||+.+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~~~~~~~~~ 354 (481)
T TIGR00879 277 STRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE-NAGVSTDHAFLVSIIVGAVNFAFTF-VAIFLVDRFGRRPLLLI 354 (481)
T ss_pred cCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHH
Confidence 2211 222222222333333333344555566655 4699998888888888999999984 44899999999999988
Q ss_pred HHHHHHHHHHHHHhh---cc-------hhH-HHHHHHHHHhhhh-hhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHH
Q 013411 312 GLLFGCVHMFLYSVA---WS-------SWV-PYAAAVFSILSVF-SHPCLRTIVSKQVASNEQGKAQGCISGICSFANLV 379 (443)
Q Consensus 312 ~~~~~~~~~~~~~~~---~~-------~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~ 379 (443)
+..+..++.+.+... .. .+. .....++..+.+. ..+....+..|.+|+++|+++.|+.+...+++.++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i 434 (481)
T TIGR00879 355 GAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFI 434 (481)
T ss_pred HHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 888777776666521 11 111 1222333333332 34666778899999999999999999999999999
Q ss_pred hHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 380 SPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 380 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
+|.+.+.+.+..+ . ...+++.+++.+++.+......
T Consensus 435 ~~~~~~~~~~~~~-~-------~~~f~~~~~~~~~~~i~~~~~~ 470 (481)
T TIGR00879 435 VGFLFPTMLESIG-V-------GGVFIFFGGLNVLGLIFVYFFL 470 (481)
T ss_pred HHHHHHHHHHhcC-c-------cceehhHHHHHHHHHHHHheec
Confidence 9999999988742 1 2244555555555555554444
No 42
>PRK10054 putative transporter; Provisional
Probab=100.00 E-value=3.3e-33 Score=261.79 Aligned_cols=349 Identities=15% Similarity=0.154 Sum_probs=274.6
Q ss_pred CCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhH
Q 013411 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT 82 (443)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~ 82 (443)
.||..+.+.+..++...+.+...|.+|.+.++ +++.+..+.|++.+.+.++..+++++.|+++||+|||++++
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~-------~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~ 77 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSR-------QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYML 77 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHH
Confidence 45667778888999999999999999998755 47888899999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhh
Q 013411 83 VPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR 162 (443)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~ 162 (443)
++.++.+++.++.+++++ ++.+++.|.+.|. +.+...+...++..|..|+++|++++++.....++|.++||.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~ 153 (395)
T PRK10054 78 LAITAFASGFIAIPLVNN---VTLVVLFFALINC-AYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGT 153 (395)
T ss_pred HHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 8888889999987 777778889999999999999999999999999999999999988
Q ss_pred hh---chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccCh
Q 013411 163 FI---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSP 239 (443)
Q Consensus 163 ~~---~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (443)
.+ +|+..|++.+++.++..+...+.+||++++++++ + + +..+.++ ..++|
T Consensus 154 ~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-------------------~-~---~~~~~~~----~~~~~ 206 (395)
T PRK10054 154 LLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE-------------------T-G---SVWSPSV----LLQDK 206 (395)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-------------------h-h---hhhhhhh----hccCc
Confidence 75 8999999888877776555556666654322100 0 0 0000111 23566
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--cCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Q 013411 240 TFSQAAIVAFLSNLADAGLQGSMMYYLKAK--FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC 317 (443)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (443)
.++...+..++..+.......+.+.|..+. .+.+....+.......+.....+... +++.||.++|+.+..+..+..
T Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~~~~~~ 285 (395)
T PRK10054 207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSV-GRRLNAANIRPLMTAGTLCFV 285 (395)
T ss_pred eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHH-HHHHccCCchhHHHHHHHHHH
Confidence 776666666666665555555667776543 35556667778887777777777444 689999999999888888877
Q ss_pred HHHHHHHhh-cchhHHH-HHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 318 VHMFLYSVA-WSSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 318 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
++...+... ++.+... ...+++++.....|...+.+.+..|++.++++.+..+ ...+|..+||.+.|.+.|+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~ 360 (395)
T PRK10054 286 IGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL 360 (395)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 777666553 3444333 3556677777778888899999999999999999765 66799999999999999985
No 43
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=100.00 E-value=2.8e-32 Score=256.42 Aligned_cols=344 Identities=14% Similarity=0.111 Sum_probs=256.3
Q ss_pred CcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHH
Q 013411 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP 84 (443)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~ 84 (443)
|.+.......+....+.++..+.+|.+.++ ++.+..+.++..+.+.++..+++++.|+++||+|||+.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~ 74 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYLVGLPRIAAD--------LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPG 74 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHH
Confidence 445556677778888888888999988544 677888899999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh
Q 013411 85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI 164 (443)
Q Consensus 85 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~ 164 (443)
.++.+++..++..+++ ++.+++.|+++|+ +.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+
T Consensus 75 ~~~~~i~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l 150 (392)
T PRK10473 75 AALFIIASLLCSLAET---SSLFLAGRFLQGI-GAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI 150 (392)
T ss_pred HHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 8999999999999 88888889999999999999999999999999999998998887654
Q ss_pred ----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChh
Q 013411 165 ----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPT 240 (443)
Q Consensus 165 ----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (443)
+||+.|++.+.+.++..++..+.+||+++++++++ ....++..+.+ +++.
T Consensus 151 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~-~~~~ 204 (392)
T PRK10473 151 MLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPAA-------------------------SSKPRENSESL-LNRF 204 (392)
T ss_pred HhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCc-------------------------cchHHHHHHHH-hCHH
Confidence 89999999988887777766677787643322000 00011111222 3444
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 013411 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM 320 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 320 (443)
++...+...+..........+.|.+.++.+|+++.+.+...+..+++.+++..+ .+++.||+++|+.+..+..+..++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~r~g~~~~~~~~~~~~~~~~ 283 (392)
T PRK10473 205 FLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFS-TPFALGIFKPRTLMLTSQVLFLAAG 283 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 444344333333333445556688888888999999999999999999999954 4899999999999998888887777
Q ss_pred HHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhh
Q 013411 321 FLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFL 392 (443)
Q Consensus 321 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 392 (443)
..+....+.+.... ..+.+.+.+...+. ....+..|.++|+ |..+....++..+++.+.+++.+..+
T Consensus 284 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g 351 (392)
T PRK10473 284 ITLALSPSHAVSLFGITLICAGFSVGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG 351 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76666554432222 23333343333333 3334455655443 44555566777888888888888754
No 44
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=100.00 E-value=1.7e-32 Score=258.29 Aligned_cols=341 Identities=17% Similarity=0.165 Sum_probs=252.7
Q ss_pred HHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHH
Q 013411 12 ITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIP 91 (443)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~ 91 (443)
+..++..++.++..|.+|.+.+ +++.+..+.++..+++.++..++++++|+++||+|||++++.+.++++++
T Consensus 23 ~~~~~~~~~~~~~~p~l~~i~~--------~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 94 (413)
T PRK15403 23 LYDFAAYLTTDLIQPGIINVVR--------DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA 94 (413)
T ss_pred HHHHHHHHHHHhhccCHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHH
Confidence 3344555677899999998744 46778888999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----chh
Q 013411 92 LAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STS 167 (443)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~ 167 (443)
.++++++++ ++.++++|+++|+ +.+...+...+++.|++|+++|++++++......+|..+||.+++.+ +||
T Consensus 95 ~~~~~~a~~---~~~l~~~r~l~Gi-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~ 170 (413)
T PRK15403 95 CAATLFTTS---MTQFLIARFIQGT-SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK 170 (413)
T ss_pred HHHHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 999999999 9999999999999 87776677788899999999999999999999999999999888754 899
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHH
Q 013411 168 AAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIV 247 (443)
Q Consensus 168 ~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (443)
+.|++.+++.++..+..++.+||++++++++ .+.+..+++..+.+ ++|.++...+.
T Consensus 171 ~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~-----------------------~~~~~~~~~~~~ll-~~~~~~~~~l~ 226 (413)
T PRK15403 171 VLFAIIAVMGLIAFVGLLLAMPETVKRGAVP-----------------------FSAKSVLRDFRNVF-RNRLFLTGAAT 226 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccccCCC-----------------------CChHHHHHHHHHHH-cCHHHHHHHHH
Confidence 9999999888777666666788875432200 00001122322333 67888877777
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHh--
Q 013411 248 AFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSV-- 325 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 325 (443)
.++.......+..+.|.++++.+|+++.+.++.......+..++..+. +++.++..+++.......+..++..++..
T Consensus 227 ~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~ 305 (413)
T PRK15403 227 LSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIV-ARFVKDPTEPRFIWRAVPIQLVGLALLIVGN 305 (413)
T ss_pred HHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777788999999999999999998877788888877555 45544433333332222222222222211
Q ss_pred --hcchhH--HHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 326 --AWSSWV--PYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 326 --~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
..+.+. .....+++++.+...|...+...... +..+|++.++.+.....+...++...+++.+.
T Consensus 306 ~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~-~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 306 LLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSN-NLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred HHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 122221 22345567777777777775443222 23479999999999999999999999988776
No 45
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=100.00 E-value=7.5e-34 Score=266.23 Aligned_cols=359 Identities=13% Similarity=0.088 Sum_probs=262.1
Q ss_pred HHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHH
Q 013411 14 IFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLA 93 (443)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~ 93 (443)
.+...+......+..|.+. ++++.+..+.|++.+++.++..+++++.|+++||+|||++++.+.++.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 75 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLV--------EEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNL 75 (379)
T ss_pred hhHHHHhHHhhhhhhHHHH--------HHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHH
Confidence 3445556666666777663 34678888999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhh-hhhhh----hchhh
Q 013411 94 ILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGT-ISARF----ISTSA 168 (443)
Q Consensus 94 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~l~~~----~~w~~ 168 (443)
+++++++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+.+..+|..++| .++.. .+||+
T Consensus 76 ~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 151 (379)
T TIGR00881 76 FFGFSTS---LWVMAALWALNGI-FQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHW 151 (379)
T ss_pred HHHHhhh---HHHHHHHHHHHHh-hccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchh
Confidence 9999998 9999999999999 98999999999999999999999999999999999999998 34433 38999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHH
Q 013411 169 AFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVA 248 (443)
Q Consensus 169 ~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
.|++.+++.++..+...+..||++++++.++..++.++ +.++. +++++++....+...+.+.++|.++...+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (379)
T TIGR00881 152 VFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNE----EPDGD--AEKKEEELTKKQIFLQYVLLNKVLWYISLGY 225 (379)
T ss_pred HHHHHHHHHHHHHHHHheeeCCCccccccCccccCccc----ccccc--cccccccccchHHHHHHHHhcchHHHHHHHH
Confidence 99998888777666676777876654321110000000 00000 0001111111222223334677787777777
Q ss_pred HHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc-chHHH-HHH-HHHHHHHHHHHh
Q 013411 249 FLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGE-ARLLS-FGL-LFGCVHMFLYSV 325 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~-~~~-~~~~~~~~~~~~ 325 (443)
++..........+.|.|+++.+|+++.+.+...+...++.+++.+ +.+++.||..+ |+... ... ....++......
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
T TIGR00881 226 VFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTL-LAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL 304 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHH-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc
Confidence 777777788888999999998899999999999999999999994 45799998643 33222 211 122222222222
Q ss_pred h--cchhHH-HHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 326 A--WSSWVP-YAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 326 ~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
. .+.+.. ....+.+.......+....+..|.+|+++|+++.|+.+...++|..++|.+.|.+.|..
T Consensus 305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 373 (379)
T TIGR00881 305 NPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF 373 (379)
T ss_pred CcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence 1 122222 22333444444455566778899999999999999999999999999999999999985
No 46
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=100.00 E-value=2.5e-33 Score=268.58 Aligned_cols=370 Identities=14% Similarity=0.071 Sum_probs=247.5
Q ss_pred HHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHH
Q 013411 11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII 90 (443)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i 90 (443)
+...++..++.....|.+|.+. ++++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~--------~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~ 113 (476)
T PLN00028 42 WISFFTCFVSTFAAAPLLPIIR--------DNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP 113 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 4445555565666667777773 34788888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhh----h----
Q 013411 91 PLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA----R---- 162 (443)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~----~---- 162 (443)
+.++++++++ ++.+++.|++.|+ +.+.. +....+++|++|+++|++++++......+|..+++.+. .
T Consensus 114 ~~~~~~~~~s---~~~l~~~r~l~G~-~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~ 188 (476)
T PLN00028 114 AVFCMSLVSS---ATGFIAVRFFIGF-SLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKD 188 (476)
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHH-HHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998 8999999999998 76654 34567899999999999999999876666665554332 2
Q ss_pred -----hhchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCch-hHHHhhhc
Q 013411 163 -----FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSI-DDMVHLLK 236 (443)
Q Consensus 163 -----~~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 236 (443)
..+||+.|++.+++.++..+..+++.++.|+.+. + +. + + +.+.++.+. +...+.+
T Consensus 189 ~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~-----~----~~-----~--~--~~~~~~~~~~~~~~~~~- 249 (476)
T PLN00028 189 AGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNY-----R----EL-----K--K--SGTMPKDSFSKVLRYGV- 249 (476)
T ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCch-----h----hH-----H--h--cCccccccHHHHHHHHH-
Confidence 1379999999998887766655444444332210 0 00 0 0 000001111 2222223
Q ss_pred cChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-------hHH
Q 013411 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEA-------RLL 309 (443)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~ 309 (443)
++++.+...+..++..........+.|.|+.+.+|+++.+++.+.++..++..+++ +.+|+++||++|| ...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~~~r~~~~~r~~~~ 328 (476)
T PLN00028 250 TNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFAR-PAGGYLSDVAARRFGMRGRLWAL 328 (476)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHhcCcchhHHHH
Confidence 45566666655555555555677788999988889999999999999999999999 4558999999865 222
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHH
Q 013411 310 SFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (443)
.....+.++....+....+.+.... .++++++.....+..+++..+..| +++|++.|+.+....+|..++|.+.+
T Consensus 329 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~--- 404 (476)
T PLN00028 329 WIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF--- 404 (476)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH---
Confidence 2333333333333333333332222 344455555555556666666554 78999999987777676666665543
Q ss_pred HhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 389 ALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
..+.. . ....+.+.+++.+++.+..+..+
T Consensus 405 -~~~~~--~---y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 405 -TGSSY--S---TETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred -hcCCc--c---HhhHHHHHHHHHHHHHHHHHhee
Confidence 21100 0 12355666666666666655443
No 47
>TIGR00898 2A0119 cation transport protein.
Probab=100.00 E-value=6.2e-33 Score=269.61 Aligned_cols=367 Identities=18% Similarity=0.181 Sum_probs=259.2
Q ss_pred Ccchhhh---HHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhh
Q 013411 40 RDECSLA---IYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAM 116 (443)
Q Consensus 40 ~~~~~~s---~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~ 116 (443)
.+|++++ ..+.+++.+++.++.++++++.|+++||+|||++++++.++.+++.++.+++++ ++.+++.|++.|+
T Consensus 116 ~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~r~l~G~ 192 (505)
T TIGR00898 116 VTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN---YTVFLVFRLLVGM 192 (505)
T ss_pred EEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHh
Confidence 5667887 889999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh-chhhHHHHHHHHHHHHHHHHHHhccCCCCcc
Q 013411 117 VCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-STSAAFQAATAGSIISAVYMRIFLPESVRDE 195 (443)
Q Consensus 117 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~ 195 (443)
+.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++..+ +||+.|++.+++.++..+.. +++||+|++.
T Consensus 193 -~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~-~~~~esp~~l 270 (505)
T TIGR00898 193 -GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLS-WFVPESPRWL 270 (505)
T ss_pred -hccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HhcCCChHHH
Confidence 99998999999999999999999999999999999999999988766 79999999988877765554 7899998642
Q ss_pred cc-------ccccccchhhhhhh-hhh--hh--hhh-hhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHH
Q 013411 196 DL-------YTPILSSKAEISAS-CEE--ST--KKL-QVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSM 262 (443)
Q Consensus 196 ~~-------~~~~~~~~~~~~~~-~~~--~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (443)
.. .+.+++..+.+... .++ .. +++ ++++++.+.++. + ++|.++...+......+.........
T Consensus 271 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (505)
T TIGR00898 271 ISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDL---F-RTPNLRKTTLCLMMLWFTTAFSYYGL 346 (505)
T ss_pred HHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHH---h-CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111111110000 000 00 000 011111233333 2 56666655555444433332222222
Q ss_pred HHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcch--hHHHH-HHHHH
Q 013411 263 MYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSS--WVPYA-AAVFS 339 (443)
Q Consensus 263 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~ 339 (443)
+.+.. .++.+.. ......++..+++. ++.+++.||+|||+.+..+.++.+++.+++...++. +.... ..+.+
T Consensus 347 ~~~~~-~~~~~~~---~~~~~~~~~~i~~~-~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 421 (505)
T TIGR00898 347 VLDLG-NLGGNIY---LDLFISGLVELPAK-LITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGK 421 (505)
T ss_pred hcccc-ccCCChH---HHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 33332 2354433 23344566777777 444799999999999999998888887777665543 22222 33445
Q ss_pred HhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHH
Q 013411 340 ILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQS 419 (443)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (443)
++....++..+.+..|.+|++.|+++.|+.+....+|++++|.+.+ +.+.. ....+.+.+++.+++.+..
T Consensus 422 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~---------~~~~~~~~~~~~~~~~~~~ 491 (505)
T TIGR00898 422 FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKW---------LFLPLVLFGGLALLAGILT 491 (505)
T ss_pred HHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHH---------HhhHHHHHHHHHHHHHHHH
Confidence 5666777888999999999999999999999999999999999998 44331 1234555555555555544
Q ss_pred HHhhcCCCCCCCCCCcc
Q 013411 420 IMIRVAPPLPVSSQRVS 436 (443)
Q Consensus 420 ~~~~~~~~~~~~~~~~~ 436 (443)
... ||+++++.
T Consensus 492 ~~l------pet~~~~l 502 (505)
T TIGR00898 492 LFL------PETKGVPL 502 (505)
T ss_pred HcC------cCCCCCCC
Confidence 433 45555544
No 48
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=100.00 E-value=1.6e-33 Score=268.49 Aligned_cols=344 Identities=13% Similarity=0.054 Sum_probs=248.3
Q ss_pred CcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHH-HHHhhhhhc
Q 013411 40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYV-LRTLTAMVC 118 (443)
Q Consensus 40 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~r~l~G~~~ 118 (443)
.++++.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++ ++.+++ .|+++|+ +
T Consensus 46 ~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~l~G~-~ 121 (455)
T TIGR00892 46 QQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSN---VIELYLTAGFITGL-G 121 (455)
T ss_pred HHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHh-c
Confidence 4457888889999999999999999999999999999999999999999999999999988 887764 5799999 8
Q ss_pred cchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCc
Q 013411 119 EGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRD 194 (443)
Q Consensus 119 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~ 194 (443)
.+...+...+++.|+++ ++|+++.++.+.+..+|..++|.+++.+ +||+.|++.+++.++..+..++..|+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~ 200 (455)
T TIGR00892 122 LAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ 200 (455)
T ss_pred chhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 88766777888899996 7899999999999999999988877654 899999999988776555443443432211
Q ss_pred cc-cccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcC
Q 013411 195 ED-LYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFN 273 (443)
Q Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (443)
+. +.+..+..+++.. .++. ......++..+..+ ++.+ ++|.++......++..........++|.|.++ .|++
T Consensus 201 ~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s 274 (455)
T TIGR00892 201 RVSKSKSKEGLPPDGS-TKKL--SKKSTAEKINRFLD-FSLF-THRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVD 274 (455)
T ss_pred ccccccccccCCCCCc-cccc--cccchhhhhhhhcc-hHHh-cCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCC
Confidence 11 0000000000000 0000 00000000011111 1223 56777777777777777777777888999877 5999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccchHHHH--HHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhH
Q 013411 274 KNQFADLMVIAGIAGTISQLIMMPVLAPTV--GEARLLSF--GLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPC 348 (443)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 348 (443)
+.+.+...+..+++.++++++. +++.||. ++++.... +.+..+++.++....++.+..+. .++.+++.+...+.
T Consensus 275 ~~~~g~~~~~~~~~~~~~~~~~-g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~ 353 (455)
T TIGR00892 275 EYEAAFLLSIIGFVDIFARPSC-GLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGAL 353 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHH
Confidence 9999999999999999998444 7899873 33333332 33333344444444555544433 56678888888889
Q ss_pred HHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCC
Q 013411 349 LRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDR 395 (443)
Q Consensus 349 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 395 (443)
..+++.|.+|++++++++|+.+...++|..++|.+.|.+.+..+++.
T Consensus 354 ~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~ 400 (455)
T TIGR00892 354 LFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYK 400 (455)
T ss_pred HHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcc
Confidence 99999999999999999999999999999999999999998865443
No 49
>PRK15075 citrate-proton symporter; Provisional
Probab=100.00 E-value=7e-33 Score=263.38 Aligned_cols=349 Identities=13% Similarity=0.056 Sum_probs=238.6
Q ss_pred CcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHH-HHH-----HHHhHHHHHhhhcccccccccccc
Q 013411 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSG-FQQ-----AIIGLGTLVMMPLVGNLSDKYGRK 78 (443)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~-----s~~~~~~~~~~~~~G~l~Dr~Grr 78 (443)
+....+++..+++.++.....+..|.+.++. +.+..+.+ +.. ....++..+++++.|+++||+|||
T Consensus 15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr 86 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFFLFGFYATAIAKTF--------FPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRR 86 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchH
Confidence 3444568889999999999999999886653 22222222 222 223344457899999999999999
Q ss_pred hhhHHHHHHhHHHHHHHHhccCCchhH--------HHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHh
Q 013411 79 ALLTVPITLSIIPLAILAYSRSRNFFY--------AYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIV 150 (443)
Q Consensus 79 ~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 150 (443)
++++.+.++.+++.++++++++ ++ .++++|+++|+ +.+...+....+++|++|+++|++++++.+...
T Consensus 87 ~~l~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~ 162 (434)
T PRK15075 87 KGLIVTLSIMASGTLLIAFVPG---YATIGLAAPLLVLLGRLLQGF-SAGVELGGVSVYLAEIATPGRKGFYTSWQSASQ 162 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhhc-cccccHHHHHHHHHhhCCcccchHHHHHHHHHH
Confidence 9999999999999999999998 65 46899999999 989888888999999999999999999998887
Q ss_pred hhhhhhhhhhhhh------------hchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhh
Q 013411 151 SGAFVCGTISARF------------ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKK 218 (443)
Q Consensus 151 ~~g~~~g~~l~~~------------~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (443)
.+|..+++.++.. .+||++|++......+ ........||+++..+ ++
T Consensus 163 ~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~~~e~~~~~~--------------------~~ 221 (434)
T PRK15075 163 QVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-IFLIRRSLEETEEFLA--------------------RK 221 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-HHHHHHhcCCCHHHHH--------------------hh
Confidence 7777666655443 4899999875443211 1111112222211000 00
Q ss_pred hhhcccCCchhHHHhhhccChhhHH-HHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHH
Q 013411 219 LQVFKRLPSIDDMVHLLKSSPTFSQ-AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMP 297 (443)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (443)
++ .+.++.++..++++..+. .....++....+.....+.|.|+++.+|++..+.++......++.+++. +..|
T Consensus 222 -~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g 295 (434)
T PRK15075 222 -HR----PSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWL-PIGG 295 (434)
T ss_pred -hc----cccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 00 011122221223333322 2333334455566778889999998889999988888888888888888 4558
Q ss_pred HhhhhcccchHHHHHHHHHHHHHH-HHH-hhcc--hhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHH
Q 013411 298 VLAPTVGEARLLSFGLLFGCVHMF-LYS-VAWS--SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGI 372 (443)
Q Consensus 298 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 372 (443)
+++||++||+.+..+..+..+... .+. ...+ ...... ..+.+++.+...+....+..|.+|++.|+++.|+.+..
T Consensus 296 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~ 375 (434)
T PRK15075 296 ALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSL 375 (434)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHH
Confidence 999999999988776544432221 111 1121 111222 23345566666677778899999999999999997665
Q ss_pred HHH-HHHHhHHhHHHHHHhhh
Q 013411 373 CSF-ANLVSPLAFSPLTALFL 392 (443)
Q Consensus 373 ~~~-g~~~~~~~~g~l~~~~~ 392 (443)
... ++.++|.+.|++.|..+
T Consensus 376 ~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 376 ATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHHHhhhHHHHHHHHHHhcC
Confidence 554 58889999999999864
No 50
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=100.00 E-value=7.8e-32 Score=253.70 Aligned_cols=372 Identities=12% Similarity=0.127 Sum_probs=264.2
Q ss_pred CCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHH
Q 013411 4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV 83 (443)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~ 83 (443)
+|+.....++.++...+.++..+.++.+.++ ++.+..+.|++.+.+.++..+++++.|+++||+||||++..
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~ 83 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA--------LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMI 83 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhHHHhHHHHHHH--------hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 5677788888889999988888888888644 57788899999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHH---hc-cCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhh-hhhh
Q 013411 84 PITLSIIPLAILA---YS-RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAF-VCGT 158 (443)
Q Consensus 84 ~~~~~~i~~~~~~---~~-~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~ 158 (443)
+..+.+++.+++. .. ++ ++.+++.|+++|+ +.+...+...+.+.|++|+++|++++|+.+...++|. +++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~i~G~-g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~ 159 (402)
T TIGR00897 84 GLLLWCVGHAAFIVFGLGHAN---YPLILLFYGIRGL-GYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGS 159 (402)
T ss_pred HHHHHHHHHHHHHHHhccCcc---HHHHHHHHHHHHc-chHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988876553 22 45 7888999999999 8787777788889999999999999999999999996 5788
Q ss_pred hhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhh
Q 013411 159 ISARF----ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHL 234 (443)
Q Consensus 159 ~l~~~----~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (443)
.+++. .+|+..++.......+..++..+..+|.++++++++ + + + ..+.++..+.
T Consensus 160 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~------~---~-~~~~~~~~~~ 217 (402)
T TIGR00897 160 YYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQT------------R------E---K-FSELGKAATI 217 (402)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCcccccC------------C------c---c-hhhHHHHHHH
Confidence 88764 366555554443333333334344554322211000 0 0 0 0011111222
Q ss_pred hccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHH-HHH
Q 013411 235 LKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLS-FGL 313 (443)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 313 (443)
+.++|.++...+..++.....++...+.|.|.++ +|+++.+.+.......++..++.+.. |++.||++||+.+. .+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~-g~l~dr~~~~~~~~~~~~ 295 (402)
T TIGR00897 218 LFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIF-GIVGDKLGWMNTVRWFGG 295 (402)
T ss_pred HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHHHH
Confidence 3467777777777777777778888899999876 69999998998888999999999555 79999999887653 333
Q ss_pred HHHHHHHHHHHhh-----cchhHHH-HHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHH
Q 013411 314 LFGCVHMFLYSVA-----WSSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL 387 (443)
Q Consensus 314 ~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 387 (443)
....+....+... ++.+... ...+.+++.+...+ ......+. ++++||++.|+.+...+++..++|.+.|.+
T Consensus 296 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l 373 (402)
T TIGR00897 296 VGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLF 373 (402)
T ss_pred HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222211 1223222 24455665555444 34555665 457899999999999999999999999999
Q ss_pred HHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 013411 388 TALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIM 421 (443)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (443)
.|..+. ...+++.+++.+++.....+
T Consensus 374 ~~~~g~--------~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 374 IGFFGA--------IGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred Hhhcch--------HHHHHHHHHHHHHHHHHHHH
Confidence 998531 23445555555555554443
No 51
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=100.00 E-value=3.1e-33 Score=268.64 Aligned_cols=361 Identities=10% Similarity=0.036 Sum_probs=256.7
Q ss_pred chhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhc--cCCchhHHHHHHHHhhhhhcc
Q 013411 42 ECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYS--RSRNFFYAYYVLRTLTAMVCE 119 (443)
Q Consensus 42 ~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~l~~~r~l~G~~~~ 119 (443)
|++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++ .+ ++.+++.|+++|+ +.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~~~G~-~~ 145 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG---IALVVFCRVIQGL-AQ 145 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC---chHHHHHHHHHHH-hc
Confidence 688999999999999999999999999999999999999999999999998887544 55 7889999999999 99
Q ss_pred chhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh-----chhhHHHHHHHHHHHHHHHHHHhccCCCCc
Q 013411 120 GSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-----STSAAFQAATAGSIISAVYMRIFLPESVRD 194 (443)
Q Consensus 120 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~ 194 (443)
+...|....++.|++|+++|++++++...+..+|.+++|++++.+ +||+.|++.+++.++..++.+...+|+|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~ 225 (465)
T TIGR00894 146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSI 225 (465)
T ss_pred ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCccc
Confidence 999999999999999999999999999999999999998887643 899999999988877766666667776654
Q ss_pred cccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcCh
Q 013411 195 EDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNK 274 (443)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (443)
+++.+ +.+.+. .++..++++++.+.+.++++. .+++.++...+..++.....+.+..++|.|+++.+|++.
T Consensus 226 ~~~~~---~~~~~~--i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~ 296 (465)
T TIGR00894 226 HPCIS---KFEKKY--INSSLQGQKGSTRQSLPIKAI----PKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSG 296 (465)
T ss_pred CCCCC---HHHHHH--HHhhcccccCCCCCCCCHHHH----hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCh
Confidence 32111 000000 000000000011112234443 377888888888888888888889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchH--------HHHHHHHHHHHHHH--HHh-hcchhHHHH-HHHHHHhh
Q 013411 275 NQFADLMVIAGIAGTISQLIMMPVLAPTVGEARL--------LSFGLLFGCVHMFL--YSV-AWSSWVPYA-AAVFSILS 342 (443)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~--~~~-~~~~~~~~~-~~~~~~~~ 342 (443)
.+.+...+...++..++.. .+|++.||+++|+. +..+.......... ... ..+.+.... ..+.+.+.
T Consensus 297 ~~~g~~~~~~~~~~~i~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (465)
T TIGR00894 297 KENGLLSSLPYLFAWLCSI-FAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVS 375 (465)
T ss_pred HHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 9999999999999999984 55899998764421 11111111111111 112 112222222 22223333
Q ss_pred hhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHh
Q 013411 343 VFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (443)
+...+.......+..| +.+|.+.|+.+..+.++..++|.+.|.+.+.... ......+.+.++..+++.++....
T Consensus 376 ~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~-----~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 376 SGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSK-----NVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred hhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCc-----hHHHHHHHHHHHHHHHHHHHeeee
Confidence 3344555555667776 5899999999999999999999999988765210 111335566666666665555443
No 52
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=100.00 E-value=4.8e-32 Score=251.34 Aligned_cols=368 Identities=12% Similarity=0.108 Sum_probs=273.5
Q ss_pred CcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHH
Q 013411 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP 84 (443)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~ 84 (443)
|+++...+..++.+....+..|+.+.+.+ .|+++|..|.+++.+++.+++.++.++.|++.||+|.|+++.++
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~-------~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~ 106 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNK-------IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFS 106 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 45555666677777778888887776633 25889999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhc-----cCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhh---
Q 013411 85 ITLSIIPLAILAYS-----RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVC--- 156 (443)
Q Consensus 85 ~~~~~i~~~~~~~~-----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~--- 156 (443)
.++.++.++..+++ ++ ++.+++.|++.|+ + +..++.....+++|+|+++||+++|+.....++|..+
T Consensus 107 ~ll~~i~~~~~~~a~~~~~~s---~~~lli~r~l~Gi-g-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 107 TAILIIPCVWLGIAVQNPNTP---FGIFIVIALLCGF-A-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHHHHHHHHHHHHHHcccCCC---HHHHHHHHHHHHH-H-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999986 67 9999999999999 7 6678899999999999999999999997666666554
Q ss_pred -hhhhhh------------------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhh
Q 013411 157 -GTISAR------------------FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTK 217 (443)
Q Consensus 157 -g~~l~~------------------~~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (443)
+|.+.. ..+||..+++..++.++..++.+++.+|.++. +
T Consensus 182 l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-~--------------------- 239 (462)
T PRK15034 182 VAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS-R--------------------- 239 (462)
T ss_pred HHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-c---------------------
Confidence 444321 22367777777777766666665665543321 1
Q ss_pred hhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHH
Q 013411 218 KLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMP 297 (443)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (443)
.+.++.++.+ |+|..|...+..++....+.++..++|.|.++.+ +.........+..+...+.+ +++|
T Consensus 240 --------~~~~~~~~vl-k~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~r-plgG 307 (462)
T PRK15034 240 --------ASIADQLPVL-QRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIAR-SVGG 307 (462)
T ss_pred --------cCHHHHHHHh-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHH-HhhH
Confidence 1344444444 6778888888888888888888889999998865 33333333344566677777 5568
Q ss_pred HhhhhcccchHHHHHHHHHHHHHHHHHh-hc-----chhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCC-----------
Q 013411 298 VLAPTVGEARLLSFGLLFGCVHMFLYSV-AW-----SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVAS----------- 359 (443)
Q Consensus 298 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~----------- 359 (443)
+++||+|+++++..+.+...++...... .+ +.+.... .+.+.++.+..+...+.++.+.+|+
T Consensus 308 ~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~ 387 (462)
T PRK15034 308 AISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG 387 (462)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence 9999999999999888877666543222 22 1222222 2223456666777888888888874
Q ss_pred ----------CcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhhcC
Q 013411 360 ----------NEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIRVA 425 (443)
Q Consensus 360 ----------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
++.|.+.|+....+.+|+++-|.+.|...+..+++ ...+....+..+++....|....+
T Consensus 388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~-------~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSP-------VGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCc-------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 16789999999999999999999999999887543 345677777777777777765533
No 53
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=100.00 E-value=3.7e-32 Score=258.76 Aligned_cols=364 Identities=13% Similarity=0.093 Sum_probs=249.6
Q ss_pred hhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCC-chhHHHHHHHHhhhhhccch
Q 013411 43 CSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSR-NFFYAYYVLRTLTAMVCEGS 121 (443)
Q Consensus 43 ~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~ 121 (443)
.+.+..+.|++.+++.++..+++++.|+++||+|||+.+..+.++.+++.++.++.++. .+++.+.+.|++.|+ +.+.
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~-~~g~ 134 (438)
T TIGR00712 56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGW-FQGM 134 (438)
T ss_pred cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH-Hhhc
Confidence 36778889999999999999999999999999999999999999999998887765321 127788899999999 8888
Q ss_pred hhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh-----hchhhHHHHHHHHHHHHHHHHHHhccCCCCccc
Q 013411 122 IHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF-----ISTSAAFQAATAGSIISAVYMRIFLPESVRDED 196 (443)
Q Consensus 122 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-----~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~ 196 (443)
..+.....+.|++|+++|++++++.+....+|..+++.+.+. .+||..|++.+++.++..+..++++||+|++.+
T Consensus 135 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~ 214 (438)
T TIGR00712 135 GWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG 214 (438)
T ss_pred chHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC
Confidence 888889999999999999999999999999998888765442 389999999998888877667778888765422
Q ss_pred cccccccchhhhhhhhhhhhhhhhhcccCCchhHH-HhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChh
Q 013411 197 LYTPILSSKAEISASCEESTKKLQVFKRLPSIDDM-VHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKN 275 (443)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (443)
.++ .++.+++..++ . .+ +. +++.+.++. .+...+++.++...+..++.....++...+.|.|+++..|+++.
T Consensus 215 ~~~-~~~~~~~~~~~--~-~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~ 287 (438)
T TIGR00712 215 LPP-IEEYRNDYPDD--Y-NE--KA-EQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALD 287 (438)
T ss_pred CCC-chhcccccccc--c-cc--cc-ccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChh
Confidence 110 00000000000 0 00 00 001112221 12244677787777777776667778888999999998899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH---HHHHHHHhhc--chhHHHH-HHHHHHhhhhhhhHH
Q 013411 276 QFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC---VHMFLYSVAW--SSWVPYA-AAVFSILSVFSHPCL 349 (443)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~ 349 (443)
+.+.......+..+++. +..+++.||+++++....+..... ++...+...+ +.+.... .+..+.+........
T Consensus 288 ~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 366 (438)
T TIGR00712 288 KSSWAYFLYEYAGIPGT-LLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLI 366 (438)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHH
Confidence 99999999999999999 455899999964432222222211 1222222211 2222211 222232222222222
Q ss_pred HHHHHhcCCCCcchhHHhHHhHHHHHHH-HHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 350 RTIVSKQVASNEQGKAQGCISGICSFAN-LVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 350 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
.....|.+|+++||++.|+.+...++++ .++|.+.|.+.|..+ + ...+.+..+..+++.+......
T Consensus 367 ~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~-------~~~~~~~~~~~~~~~~~~~~~~ 433 (438)
T TIGR00712 367 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-W-------DGGFMVMIGGSILAVILLIVVM 433 (438)
T ss_pred HHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-c-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999988874 689999999999753 1 2344455555555555555554
No 54
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-33 Score=259.67 Aligned_cols=369 Identities=15% Similarity=0.110 Sum_probs=283.3
Q ss_pred CcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhcc
Q 013411 40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCE 119 (443)
Q Consensus 40 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 119 (443)
+.+++.+..+.|++.+.++.|+++++++.|+++||+|-|+++..+.++.++++++...+.+.+ ++.+++.|++||+ +.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~-~~~~~~~R~lqGl-~~ 142 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG-FYLLLVLRFLQGL-GQ 142 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHhHH-HH
Confidence 457889999999999999999999999999999999999999999999999999999887644 5688999999999 99
Q ss_pred chhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh-----chhhHHHHHHHHHHHHHHHHHHhccCCCCc
Q 013411 120 GSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-----STSAAFQAATAGSIISAVYMRIFLPESVRD 194 (443)
Q Consensus 120 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~ 194 (443)
+..+|+...+.++|.|++||++..++...+..+|.+++.++++.+ ||++.|++.++++++..++..++..|+|.+
T Consensus 143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 999999999999999999999999999999999999887777654 899999999999999888887888888876
Q ss_pred cccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcCh
Q 013411 195 EDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNK 274 (443)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (443)
++... ++|.+.-++.+.++..+++.+.|+++++ +++.++...+..++.......+..+.|.|+++++|++.
T Consensus 223 h~~is-----~~El~~I~~~k~~~~~~~~~~vP~~~i~----ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v 293 (466)
T KOG2532|consen 223 HPNIS-----EKELKYIEKGKSEAHVKKKPPVPYKAIL----TSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDV 293 (466)
T ss_pred CCCCC-----HHHHHHHHhcccccccCCCCCCCHHHHH----cCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCh
Confidence 44110 0000000000011111111456788865 88999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccc---------chHHHHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHhhh
Q 013411 275 NQFADLMVIAGIAGTISQLIMMPVLAPTVGE---------ARLLSFGLLFGCVHMFLYSVAWSSW--VPYAAAVFSILSV 343 (443)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 343 (443)
.+.|++.++..+...+.. +++|.++||..+ |..-.++....+++++.+.+.++.. .......+..+..
T Consensus 294 ~~~G~~salP~l~~~~~k-~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~ 372 (466)
T KOG2532|consen 294 RETGFLSALPFLAMAIVK-FVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLS 372 (466)
T ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHc
Confidence 999999999999999999 555899998755 2233456666666677676666433 2333333444444
Q ss_pred hhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 344 FSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 344 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
...............+++.+..+|+.+....+.++++|.+.|.+... . ... . ....|++.+++.+++.++...+.
T Consensus 373 g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~-~-t~~--e-W~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 373 GFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTD-N-TRE--E-WRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred ccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCC-C-CHH--H-HHHHHHHHHHHHHHhchheeEee
Confidence 43333333333332448999999999999999999999999988842 1 111 1 14466777777777666555554
Q ss_pred cC
Q 013411 424 VA 425 (443)
Q Consensus 424 ~~ 425 (443)
+.
T Consensus 448 s~ 449 (466)
T KOG2532|consen 448 SG 449 (466)
T ss_pred cC
Confidence 33
No 55
>TIGR00895 2A0115 benzoate transport.
Probab=100.00 E-value=7.2e-33 Score=261.39 Aligned_cols=360 Identities=16% Similarity=0.139 Sum_probs=258.0
Q ss_pred HHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHH
Q 013411 14 IFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLA 93 (443)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~ 93 (443)
.+...+......+..|.+. ++++.+..+.|++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 97 (398)
T TIGR00895 26 MLMDGYDLAAMGFAAPAIS--------AEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTL 97 (398)
T ss_pred HHHHHHHHHHHHhhHHHHh--------hccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3344444555566666663 34677888899999999999999999999999999999999999999999999
Q ss_pred HHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----chhhH
Q 013411 94 ILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAA 169 (443)
Q Consensus 94 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~ 169 (443)
+..++++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+ +||+.
T Consensus 98 ~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~ 173 (398)
T TIGR00895 98 LCALATN---VTQLLILRFLAGL-GLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSL 173 (398)
T ss_pred HHHHccc---hHHHHHHHHHHhc-ccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceee
Confidence 9999988 8999999999999 98999999999999999999999999999999999999999888654 89999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccccc--ccccchhhhhhh--hhhhhhhhhhcccCCchhHHHhhhccC---hhhH
Q 013411 170 FQAATAGSIISAVYMRIFLPESVRDEDLYT--PILSSKAEISAS--CEESTKKLQVFKRLPSIDDMVHLLKSS---PTFS 242 (443)
Q Consensus 170 f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 242 (443)
|++.+++..+..++...++||+++...+++ ..++..++...+ .++.++..+++.+++..++..+.++++ +...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (398)
T TIGR00895 174 FYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITV 253 (398)
T ss_pred hhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHH
Confidence 998877676666666678888765322110 000000000000 000000000011111222333322222 2233
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 013411 243 QAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFL 322 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 322 (443)
......++..........+.| ++.+.+|.++.+.+...+...++.+++.+ +.+++.||+++|+..............+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 331 (398)
T TIGR00895 254 LLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSI-IFGWLADRLGPRVTALLLLLGAVFAVLV 331 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 333444455555666677778 44455699999999999999999999994 4589999999985544444333333333
Q ss_pred HHhhcchhHHH-HHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHH
Q 013411 323 YSVAWSSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL 387 (443)
Q Consensus 323 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 387 (443)
.....+.+... ..++.+++.+...+...++..|.+|+++|+++.|+.+....+|..++|.+.|++
T Consensus 332 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 332 GSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 33233433333 356668888888899999999999999999999999999999999999999875
No 56
>PRK10133 L-fucose transporter; Provisional
Probab=100.00 E-value=6.6e-32 Score=255.52 Aligned_cols=344 Identities=12% Similarity=0.089 Sum_probs=256.7
Q ss_pred hhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHh
Q 013411 9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLS 88 (443)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~ 88 (443)
.+.+..++..+......+.+|.+ +++++.++.+.|+..+.+.+++.+++++.|+++||+|||+++..+..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~p~i--------~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 30 LLCSLFFLWAVANNLNDILLPQF--------QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34455555566677777777877 3457888999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh--
Q 013411 89 IIPLAIL---AYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF-- 163 (443)
Q Consensus 89 ~i~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-- 163 (443)
+++.+++ .++++ ++.++++|+++|+ +.+...+..+.++.|+.|+++|.+.++..+..+.+|..+|+.++..
T Consensus 102 ~~~~~l~~~~~~a~~---~~~ll~~r~l~G~-g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 102 ALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHH-HHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999875 45778 9999999999999 9999999999999998887777778999999999999988877532
Q ss_pred ----------------------------hchhhHHHHHHH-HHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhh
Q 013411 164 ----------------------------ISTSAAFQAATA-GSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEE 214 (443)
Q Consensus 164 ----------------------------~~w~~~f~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 214 (443)
.+||++|+.... ..++..+......||.+++++
T Consensus 178 ~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~------------------ 239 (438)
T PRK10133 178 LSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH------------------ 239 (438)
T ss_pred hcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc------------------
Confidence 245556654333 332322222233444221111
Q ss_pred hhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHH-HHHcCcChhhHHHHHHHHHHHHHHHHH
Q 013411 215 STKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYL-KAKFHFNKNQFADLMVIAGIAGTISQL 293 (443)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~ 293 (443)
. + +++.+..++..+.+ ++|.++...+..++..........+.+.|+ ++.+|.++.+++..+....++.++++
T Consensus 240 ---~-~-~~~~~~~~~~~~ll-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~- 312 (438)
T PRK10133 240 ---S-D-AKQGSFSASLSRLA-RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGR- 312 (438)
T ss_pred ---c-c-ccccchhhhHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHH-
Confidence 0 0 00000111212222 566666666666666677777777888885 56789999999999999999999999
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHH
Q 013411 294 IMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGIC 373 (443)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 373 (443)
+.++++.||+++|+++..+..+..+.+.+....++.+......+.+++.+..+|..++...+..|+ +.+++.++.. +.
T Consensus 313 ~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~ 390 (438)
T PRK10133 313 FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MT 390 (438)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHh-HH
Confidence 555899999999999888877776666555554443333446677999999999999999999884 5778888886 45
Q ss_pred HHHHHHhHHhHHHHHHhh
Q 013411 374 SFANLVSPLAFSPLTALF 391 (443)
Q Consensus 374 ~~g~~~~~~~~g~l~~~~ 391 (443)
..|+.++|.+.|.+.|..
T Consensus 391 ~~g~~~~~~i~G~l~~~~ 408 (438)
T PRK10133 391 IIGGGIVTPVMGFVSDAA 408 (438)
T ss_pred hccchHHHHHHHHHHHhc
Confidence 578899999999998875
No 57
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=100.00 E-value=1.2e-31 Score=250.77 Aligned_cols=360 Identities=12% Similarity=0.033 Sum_probs=275.4
Q ss_pred cchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhh----
Q 013411 6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALL---- 81 (443)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~---- 81 (443)
..+.+.+..+....+.++..|.+|.+.++ ++.|..++|++.+++.+...++++++|+++||+|||+..
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~~--------~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 76 (382)
T TIGR00902 5 PFRWLALGFFGYFCAYGIFLPFFPAWLKG--------IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLL 76 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44567778888888899999999999755 678889999999999999999999999999999985433
Q ss_pred HHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhh
Q 013411 82 TVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA 161 (443)
Q Consensus 82 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~ 161 (443)
..+..+..+ ..+..+++ ++.+++.|.++|. +.+...|...++..|+ +++|++.++......++|.++||+++
T Consensus 77 ~~~~~l~~~--~~~~~~~~---~~~l~~~~~l~~~-~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~ 148 (382)
T TIGR00902 77 ALASAIFAA--AFSAGAHN---AWLLFIAIGLFAL-FFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALF 148 (382)
T ss_pred HHHHHHHHH--HHHHhhhh---HHHHHHHHHHHHH-HHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHH
Confidence 222222222 23446677 9999999999998 7777888888887765 47889999999999999999999887
Q ss_pred hhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhcc
Q 013411 162 RFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKS 237 (443)
Q Consensus 162 ~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (443)
+.+ |||..|++......+ .+.. +.++|++++++++ ++++. .+.++..+.+ |
T Consensus 149 g~l~~~~g~~~~f~~~~~~~~~-~~~~-~~~~~~~~~~~~~-------------------~~~~~---~~~~~~~~~l-~ 203 (382)
T TIGR00902 149 GGLIGMFDEQNILAILTAGLAF-MLIG-FLIKPTIPPKDAI-------------------PEDES---QGDSAFIALL-K 203 (382)
T ss_pred HHHHHHcChhHHHHHHHHHHHH-HHHH-HHcCCCCCCCccc-------------------ccccc---ccchhHHHHH-c
Confidence 765 899999887655332 2223 3344432221100 00000 1112222333 6
Q ss_pred ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Q 013411 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC 317 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (443)
+|+++...+..++..........+.|.|+++ .|.++.+.|.......+..++.. ...+++.||+++|+.+..+.+...
T Consensus 204 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~-~~~~~l~~r~g~~~~l~~~~~~~~ 281 (382)
T TIGR00902 204 NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIF-AFSNKLFQNCSARDLLLISAIACV 281 (382)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHH-HHhHHHHhhCCHHHHHHHHHHHHH
Confidence 7888888888888888888889999999987 69999999999998888888887 555799999999999999999999
Q ss_pred HHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhH-HHHHHHHHhHHhHHHHHHhhhcCC
Q 013411 318 VHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISG-ICSFANLVSPLAFSPLTALFLSDR 395 (443)
Q Consensus 318 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~~~~~~ 395 (443)
+....+...++.+..+. ..+-++.++...+....++.+. |++++++++++++. ...+|..++|.+.|.++|+.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g--- 357 (382)
T TIGR00902 282 GRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG--- 357 (382)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 99988888887776655 5666899999999999999988 99999999999874 567999999999999999853
Q ss_pred CCCccchhHHHHHHHHHHHHHHH
Q 013411 396 APFNFPGFSIMCIGFVSMTAFIQ 418 (443)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~ 418 (443)
...+...+.+.+++..+
T Consensus 358 ------~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 358 ------AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred ------HHHHHHHHHHHHHHHHH
Confidence 12455566666555444
No 58
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=100.00 E-value=2.1e-31 Score=253.20 Aligned_cols=379 Identities=15% Similarity=0.185 Sum_probs=305.5
Q ss_pred CCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhH
Q 013411 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT 82 (443)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~ 82 (443)
+++.+..+++...++.++..+..-.++.++.+ .+-|+...+++.++..+...+.+++.|.++||++|||+++
T Consensus 8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~--------lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili 79 (524)
T PF05977_consen 8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ--------LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI 79 (524)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 45678889999999999999999999988665 4667788999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhc--cCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhh
Q 013411 83 VPITLSIIPLAILAYS--RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTIS 160 (443)
Q Consensus 83 ~~~~~~~i~~~~~~~~--~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l 160 (443)
.+.++.++..+..++. .+..+.+.+++.-++.|+ +.+...|+.++++.|..|+++..+++++.+...++..++||.+
T Consensus 80 ~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~-~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal 158 (524)
T PF05977_consen 80 LSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGI-GSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL 158 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH
Confidence 9998876655444432 222227899999999999 9999999999999999999999999999999999999999999
Q ss_pred hhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhc
Q 013411 161 ARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLK 236 (443)
Q Consensus 161 ~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (443)
++.+ |-.+.|.+.++..++.... ....+.++++++ .+.++.....++.++.++
T Consensus 159 gG~Lva~~G~~~~f~inalsfl~~i~~-l~~~~~~~~~~~----------------------~~~e~~~~~l~~G~ryv~ 215 (524)
T PF05977_consen 159 GGILVAFFGAAAAFLINALSFLISILA-LLRWKPPPPPSS----------------------LPRERFFSALREGLRYVR 215 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHccccccccc----------------------cchhhhhhhHHHHHHHHh
Confidence 9875 6788888888766654433 344443222111 011122345677777787
Q ss_pred cChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Q 013411 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFG 316 (443)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 316 (443)
++|.++..+...++..+........+|.+.++.+|.++..+|++.+..+++.+++.++. +++.+|+++++++..+.+..
T Consensus 216 ~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~-~~l~~~~~~~~lv~~~~~~~ 294 (524)
T PF05977_consen 216 SSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLL-PRLRRRLSSRRLVLLASLLF 294 (524)
T ss_pred cchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH-HHhhcccCcchhhHHHHHHH
Confidence 88888877776766666666677788999999999999999999999999999999555 78999999999999999999
Q ss_pred HHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCC
Q 013411 317 CVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDR 395 (443)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 395 (443)
+++.+.+++.++.+.... .++.|++........++..++..|++.||++++++++....+..+|..+.|.+.+..+-
T Consensus 295 a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~-- 372 (524)
T PF05977_consen 295 ALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGV-- 372 (524)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH--
Confidence 998888888888776655 55568888888888999999999999999999999999999999999999999998632
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHh
Q 013411 396 APFNFPGFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (443)
...+.+.++..+++.......
T Consensus 373 ------~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 373 ------RTALLIAGAALLLSALIALRF 393 (524)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHh
Confidence 234555555555555554433
No 59
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=100.00 E-value=2.3e-31 Score=250.35 Aligned_cols=349 Identities=13% Similarity=0.103 Sum_probs=257.6
Q ss_pred CCCCCcchhhHHH---HHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccccccc
Q 013411 1 MEKKSGVSHLFIT---IFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGR 77 (443)
Q Consensus 1 m~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Gr 77 (443)
|||++....+.+. ..+..+......|.+|.+.+ +++.+..+.+++.+.+.++..++++++|+++||+||
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~--------~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~gr 72 (394)
T PRK11652 1 MKRQRNVNLLFMLVLLVAVGQMAQTIYVPAIADMAR--------DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGR 72 (394)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCC
Confidence 6776665555433 34445566778888888843 478888999999999999999999999999999999
Q ss_pred chhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhh
Q 013411 78 KALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCG 157 (443)
Q Consensus 78 r~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g 157 (443)
|+++..+..+..++.+++.++++ ++.+++.|++.|+ +.+...+....+..|.+++++|+++.+..+.+..+|..++
T Consensus 73 r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 148 (394)
T PRK11652 73 RPVILVGMSIFILGTLVALFAHS---LTVLIAASAIQGL-GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLA 148 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 9999999999999 8888778888899999999999999999999999999888
Q ss_pred hhhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHh
Q 013411 158 TISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVH 233 (443)
Q Consensus 158 ~~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (443)
|.+++.+ +||+.|++.++..++..+...++.||+++++++ + + +.++.++
T Consensus 149 ~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~-~----~~~~~~~ 201 (394)
T PRK11652 149 PLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADAR----------------------R-T----RVLASYR 201 (394)
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccc----------------------h-h----HHHHHHH
Confidence 8887654 899999998877776655555677876543220 0 0 0111112
Q ss_pred hhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHH
Q 013411 234 LLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGL 313 (443)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 313 (443)
...++|.++...+..+.............+.++++.+|.++.+.+.......++.+++. ...+++.||.+++.......
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~-~~~~~l~~~~~~~~~~~~~~ 280 (394)
T PRK11652 202 TLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTLMWQSVIC 280 (394)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 22356666655554444444445556667788888889999999998888888888887 44478888887333222111
Q ss_pred -HHHHHHHHHHHhh--cchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHH
Q 013411 314 -LFGCVHMFLYSVA--WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTA 389 (443)
Q Consensus 314 -~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 389 (443)
....+........ .+.+.... ..+.+++.+...|...++..+.+| +++|++.++.+....+|..+++.+.+.+.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 281 CLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 1111221111111 12233333 455677788888999999999887 688999999999999999999998887654
Q ss_pred h
Q 013411 390 L 390 (443)
Q Consensus 390 ~ 390 (443)
.
T Consensus 360 ~ 360 (394)
T PRK11652 360 T 360 (394)
T ss_pred C
Confidence 4
No 60
>PRK15011 sugar efflux transporter B; Provisional
Probab=100.00 E-value=3.3e-31 Score=248.72 Aligned_cols=366 Identities=14% Similarity=0.144 Sum_probs=253.5
Q ss_pred cchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhH-HHHHhhhcccccccccccchhh-HH
Q 013411 6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGL-GTLVMMPLVGNLSDKYGRKALL-TV 83 (443)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~G~l~Dr~Grr~~~-~~ 83 (443)
....+++..++..++..+..|.+|.+..+ +++.+..+.|++.+...+ +..++.++.|+ +||+||||.+ +.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~-------~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~ 87 (393)
T PRK15011 16 TSTAFLIVAFLTGIAGALQTPTLSIFLTD-------EVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVF 87 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHH
Confidence 34567778999999999999999998755 467888899999877655 55555544555 9999999875 45
Q ss_pred HHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcc--hhHHHHHHHHhhhhhhhhhhhh
Q 013411 84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRR--ASVFGIFSGIVSGAFVCGTISA 161 (443)
Q Consensus 84 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~l~ 161 (443)
+.+..+++..+.+++++ ++.+++.+.+.|. ..+...|...+++.|+.++++| +...+..+.+.++|.++||+++
T Consensus 88 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~ 163 (393)
T PRK15011 88 CCLLGVLACTLFAWNRN---YFVLLFVGVFLSS-FGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLA 163 (393)
T ss_pred HHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHH
Confidence 66666677777888888 8877666555554 4456778888999998876655 3445788888999999999888
Q ss_pred hhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhcc
Q 013411 162 RFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKS 237 (443)
Q Consensus 162 ~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (443)
+.+ |||..|++.++..++..+..++.+||.++++++.+ + +.+..+ ++
T Consensus 164 ~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~---~~~~~~------~~ 214 (393)
T PRK15011 164 YALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT--------------------G---TLEAPR------RN 214 (393)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc--------------------c---cccccc------cc
Confidence 654 99999999988887777777677888654322000 0 000000 01
Q ss_pred ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Q 013411 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC 317 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (443)
++..+......+...........+.|.|+++.+|+++.+.+.+.+...+..+++. ++.|++.||++||+.+..+.....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~-~~~G~l~dr~g~~~~~~~~~~~~~ 293 (393)
T PRK15011 215 RRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTM-LIAGYFAKRLGKRFLMRVAAVAGV 293 (393)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHHHHHHHHH
Confidence 1222223333333334445556688999988889999998988877777777777 455899999999998877666555
Q ss_pred HHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCC
Q 013411 318 VHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRA 396 (443)
Q Consensus 318 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 396 (443)
+........++.+.... ..+.++..+...+....+..|..| +++|++.++.+...++|..++|.+.|.+.|..+
T Consensus 294 ~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g---- 368 (393)
T PRK15011 294 CFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN---- 368 (393)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 54444443444433332 233344555555666777888888 469999999999999999999999999998742
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHh
Q 013411 397 PFNFPGFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (443)
....+.+.+++.+++....+..
T Consensus 369 ----~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 369 ----YHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHhh
Confidence 1234455555555555554443
No 61
>PRK03893 putative sialic acid transporter; Provisional
Probab=100.00 E-value=3.9e-32 Score=263.57 Aligned_cols=371 Identities=15% Similarity=0.178 Sum_probs=255.1
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHH
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT 86 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~ 86 (443)
+..+++..+++.++..+..+.+|.+.+ +++.+..+.+++.+.+.++..+++++.|+++||+|||+.++.+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 93 (496)
T PRK03893 22 FSAAWLGYLLDGFDFVLITLVLTEVQG--------EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 345677777778888888888887743 477888899999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh--
Q 013411 87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-- 164 (443)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-- 164 (443)
+.+++.++++++++ ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+
T Consensus 94 ~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 169 (496)
T PRK03893 94 LFSVGTLACGFAPG---YWTLFIARLVIGM-GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP 169 (496)
T ss_pred HHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998 9999999999999 88888899999999999999999999999999999999999887654
Q ss_pred --chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhh---------------hcccCCc
Q 013411 165 --STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQ---------------VFKRLPS 227 (443)
Q Consensus 165 --~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 227 (443)
+||+.|++..+..++ .+.....+||+++.+++++...+.++..+.....+.+... .......
T Consensus 170 ~~~w~~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (496)
T PRK03893 170 VWGWRALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNA 248 (496)
T ss_pred cCCHHHHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 899999875443333 3333355666543221110000000000000000000000 0000000
Q ss_pred hhH-------------H-Hhhh-ccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHH
Q 013411 228 IDD-------------M-VHLL-KSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQ 292 (443)
Q Consensus 228 ~~~-------------~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 292 (443)
+.. . .+.. ++.+.........+...........++|.|+++.+|+++.+.+.+.+...++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~ 328 (496)
T PRK03893 249 AIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGC 328 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0000 001111111111111111122355688999987889999999999999999999999
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcch--hHHHHH-HHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHH
Q 013411 293 LIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSS--WVPYAA-AVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCI 369 (443)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 369 (443)
. ..+++.||+++|+.+..+..+..+..+......+. +..... .+.+.......+...+++.|.+|+++||+++|+.
T Consensus 329 ~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 407 (496)
T PRK03893 329 C-VGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFT 407 (496)
T ss_pred H-HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchh
Confidence 5 45799999999998887776666555443332222 222121 2222222334566677889999999999999999
Q ss_pred hHHHHHHHHHhHHhHHHHHHhh
Q 013411 370 SGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 370 ~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
+....+|..++|.+.|.+.|..
T Consensus 408 ~~~~~~g~~lgp~l~g~l~~~~ 429 (496)
T PRK03893 408 YNVGALGGALAPILGALIAQRL 429 (496)
T ss_pred hhhhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999875
No 62
>PRK11043 putative transporter; Provisional
Probab=100.00 E-value=3.3e-31 Score=249.96 Aligned_cols=336 Identities=17% Similarity=0.129 Sum_probs=251.9
Q ss_pred HHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHH
Q 013411 11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII 90 (443)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i 90 (443)
.+...+..+..+++.|.+|.+. ++++.+..+.|++.+++.++..++++++|+++||+|||+.+..+..+.++
T Consensus 12 ~~~~~~~~~~~~~~~p~~~~i~--------~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 83 (401)
T PRK11043 12 AGLSMLGFLATDMYLPAFKAIQ--------ADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFAL 83 (401)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH--------HHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHH
Confidence 4445566677888888888874 34788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----ch
Q 013411 91 PLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----ST 166 (443)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w 166 (443)
+.+++.++++ ++.+++.|+++|+ +.+...+...+++.|++|++++++..+.......+|..++|.+++.+ +|
T Consensus 84 ~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~ 159 (401)
T PRK11043 84 GSLGMLWVES---AAQLLVLRFVQAV-GVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGW 159 (401)
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 9999999998 9999999999999 87777788889999999999999999998888888888888877654 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHH
Q 013411 167 SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAI 246 (443)
Q Consensus 167 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (443)
|+.|++.+++.++..+.. ++++|+++++++ ++++.++++ .+ +++.++...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------------------------~~~~~~~~~---~~-~~~~~~~~~~ 210 (401)
T PRK11043 160 QAIFATLFAITLLLILPT-LRLKPSKKARKQ------------------------SQDALTFKQ---LL-KSKTYLGNVL 210 (401)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCCCCcccc------------------------chHHHHHHH---HH-cChhHHHHHH
Confidence 999999888777655544 445554322110 000012222 22 4555554444
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH---
Q 013411 247 VAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY--- 323 (443)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--- 323 (443)
...+....+.....+.|.+.++ +|+++.+.+.......++..++. +..+++.||+++|+..........++...+
T Consensus 211 ~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~-~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 288 (401)
T PRK11043 211 IFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGG-YGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLA 288 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555666778888876 59999999988888888888888 455799999998887655544444433222
Q ss_pred Hh--hcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 324 SV--AWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 324 ~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
.. .++.+.... ..+.+.+.+..++...+...+..| +++|++.|+.+.....+...++.+.|.+.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 289 SLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 22 122222222 445577777888888888878777 6899999999999999999999999988764
No 63
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=100.00 E-value=2.3e-31 Score=249.12 Aligned_cols=329 Identities=14% Similarity=0.166 Sum_probs=244.8
Q ss_pred HhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHh
Q 013411 18 CFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAY 97 (443)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~ 97 (443)
.++..+..|.+|.+.++ ++.+..+.|++.+++.++..++++++|+++||+|||+.+..+.++.+++..++.+
T Consensus 4 ~~~~~~~~p~~~~~~~~--------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~ 75 (377)
T PRK11102 4 PLAIDMYLPALPVIAAD--------FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL 75 (377)
T ss_pred chHHHHHhccHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH
Confidence 35567788999998544 6788889999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----chhhHHHHH
Q 013411 98 SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAA 173 (443)
Q Consensus 98 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~ 173 (443)
+++ ++.+++.|+++|+ +.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+ +||+.|++.
T Consensus 76 ~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 76 AQT---IDQLIYMRFLHGL-AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred Hcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 999 9999999999999 88888899999999999999999999999999999999999887654 899999998
Q ss_pred HHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHh
Q 013411 174 TAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNL 253 (443)
Q Consensus 174 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (443)
+.+.++..+...+++||+++++++++ .+.++..++..+.+ +++..+...+..++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 208 (377)
T PRK11102 152 ALAAILAAALVFFFIPETLPKERRQP----------------------FHLRTTIRNFASLF-RHKRVLGYMLASGFSFA 208 (377)
T ss_pred HHHHHHHHHHHHHhCCccCcccccCC----------------------CChHHHHHHHHHHH-cChHHHHHHHHHHHHHH
Confidence 88887776666677787654322100 00000112222223 45555555555555555
Q ss_pred hhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH---hhc-ch
Q 013411 254 ADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYS---VAW-SS 329 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~ 329 (443)
.......+.|.++.+.+|+++.+.+.......++.+++..+ .+++.||+++|+.+..+..+..+..+.+. ..+ +.
T Consensus 209 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~-~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (377)
T PRK11102 209 GMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTII-NSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGF 287 (377)
T ss_pred HHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 55556666778888888999999999999999999999954 47999999999988887765443322221 112 22
Q ss_pred hHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHH-HHHHHhHHh
Q 013411 330 WVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS-FANLVSPLA 383 (443)
Q Consensus 330 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~~~~~ 383 (443)
+.... ..++..+.+...+.......|..| +++|++.++.+.... ++..+++.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 288 WALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 223333344445555666777777 889999999877654 444455444
No 64
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=100.00 E-value=4.8e-31 Score=244.58 Aligned_cols=340 Identities=22% Similarity=0.323 Sum_probs=288.7
Q ss_pred hhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHh
Q 013411 9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLS 88 (443)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~ 88 (443)
.+....+...++.....+..|.+.++ .+.+..+.+++.+...++..+++++.|+++||+|||+.+..+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~ 74 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAED--------LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLF 74 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHH
Confidence 45566778888888999999988655 4667788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----
Q 013411 89 IIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI---- 164 (443)
Q Consensus 89 ~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~---- 164 (443)
.++.+...++++ ++.+++.|++.|+ +.+...+...+++.|++|+|+|++.+++.+....+|..++|.+++.+
T Consensus 75 ~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 150 (352)
T cd06174 75 ALGSLLLAFASS---LWLLLVGRFLLGL-GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150 (352)
T ss_pred HHHHHHHHHhcc---HHHHHHHHHHHHc-ccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988 9999999999999 99999999999999999999999999999999999999999888765
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHH
Q 013411 165 STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQA 244 (443)
Q Consensus 165 ~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (443)
+||+.|++.+...++..+.. .+.+ |.++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~-~~~~-------------------------------------------------~~~~~~ 180 (352)
T cd06174 151 GWRWLFLILAILGLLLALLL-LFLL-------------------------------------------------RLLLLL 180 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHH-------------------------------------------------HHHHHH
Confidence 69999999888777665544 2222 334556
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccch-HHHHHHHHHHHHHHHH
Q 013411 245 AIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEAR-LLSFGLLFGCVHMFLY 323 (443)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~ 323 (443)
.+..++..........+.|.+.++.+|.++.+.+.......++..++..+. +++.||++||+ .+..+..+..++....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (352)
T cd06174 181 ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG-GLLSDRLGRRRLLLLIGLLLAALGLLLL 259 (352)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 666677777778888899999998889999999999999999999999555 79999999999 9999999999888888
Q ss_pred HhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccch
Q 013411 324 SVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPG 402 (443)
Q Consensus 324 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 402 (443)
...++.+.... ..+.+++.+...+...++..|..|+++|++.+|+.+...+++..++|.+.|.+.+..+ ..
T Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~--------~~ 331 (352)
T cd06174 260 ALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG--------YG 331 (352)
T ss_pred HHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--------cc
Confidence 77776554444 5667888888999999999999999999999999999999999999999999987531 13
Q ss_pred hHHHHHHHHHHHHHHHH
Q 013411 403 FSIMCIGFVSMTAFIQS 419 (443)
Q Consensus 403 ~~~~~~~~~~~~~~~~~ 419 (443)
..+.+.+++.+++.+..
T Consensus 332 ~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 332 GVFLILAALALLAALLL 348 (352)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 35556666665555543
No 65
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=100.00 E-value=3.8e-31 Score=248.21 Aligned_cols=347 Identities=12% Similarity=0.085 Sum_probs=264.8
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHH
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT 86 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~ 86 (443)
+..++...++..+..++..|.+|.+ +++++.+..+.|++.+.+.+++.+++++.|++.||+|||++++.+.+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~--------~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~ 76 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQF--------QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLF 76 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 4455666777777888888999988 44578889999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh--
Q 013411 87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-- 164 (443)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-- 164 (443)
+.+++.+++..+...++++.+++.|++.|+ +.+...+....++.+..|+++|++.+++.+...++|..+||.++..+
T Consensus 77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~ 155 (410)
T TIGR00885 77 LYALGAFLFWPAAEIMNYTLFLVGLFILTA-GLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL 155 (410)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHh-hHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998886543221228999999999999 99999999999999999999999999999999999999998876543
Q ss_pred ----------------------------chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhh
Q 013411 165 ----------------------------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEEST 216 (443)
Q Consensus 165 ----------------------------~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (443)
+||++|++.+.+.++..+.. .+.++++.++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~-~~~~~p~~~~~~------------------- 215 (410)
T TIGR00885 156 SNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI-MLTKMPALNHSD------------------- 215 (410)
T ss_pred cCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCccc-------------------
Confidence 49999998888766654433 222222111110
Q ss_pred hhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHc-CcChhhHHHHHHHHHHHHHHHHHHH
Q 013411 217 KKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKF-HFNKNQFADLMVIAGIAGTISQLIM 295 (443)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 295 (443)
++++...++.++ +.++|.++...+..+++.....+..++++.|.++.. +.+....+...+.......+++ ++
T Consensus 216 --~~~~~~~~~~~~----~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR-~~ 288 (410)
T TIGR00885 216 --AKQISFSASLSR----LARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISR-FI 288 (410)
T ss_pred --cccccchhhHHH----HHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH-HH
Confidence 000000111222 226677777777777777777778888999987642 3444444556666667778888 56
Q ss_pred HHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHH
Q 013411 296 MPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSF 375 (443)
Q Consensus 296 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 375 (443)
++++.||+++|+.+.+...+..+..++....++....+...+.+++.+..+|..++...+..+++.+....++.... +
T Consensus 289 ~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~ 366 (410)
T TIGR00885 289 GTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--I 366 (410)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--h
Confidence 68999999999999888888888887777766655555567778889999999999999999977654455554443 9
Q ss_pred HHHHhHHhHHHHHHhh
Q 013411 376 ANLVSPLAFSPLTALF 391 (443)
Q Consensus 376 g~~~~~~~~g~l~~~~ 391 (443)
|+.+.|.+.|.+.|..
T Consensus 367 Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 367 GGGIVPPLQGFIIDMK 382 (410)
T ss_pred ccchHHHHHHHHHHHh
Confidence 9999999999999964
No 66
>PRK09528 lacY galactoside permease; Reviewed
Probab=100.00 E-value=2e-31 Score=252.68 Aligned_cols=385 Identities=13% Similarity=0.035 Sum_probs=259.1
Q ss_pred CCCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhh
Q 013411 2 EKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALL 81 (443)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~ 81 (443)
.+++..+.+.+..++..++.+...|.+|.+..+ +++.+..+.|++.+++.++..++++++|+++||+|||+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~ 79 (420)
T PRK09528 7 LKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHD-------INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHL 79 (420)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 355667777788888888888999999999766 3678889999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHH---hccCC--chhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhh
Q 013411 82 TVPITLSIIPLAILA---YSRSR--NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVC 156 (443)
Q Consensus 82 ~~~~~~~~i~~~~~~---~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 156 (443)
+++..+.++...... .++.. ..+...++.++..|. +.....+....+..+. ++++++.++......++|..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i 156 (420)
T PRK09528 80 LWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGF-GFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWAL 156 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHH
Confidence 887666554433211 11110 001122334444444 3333333333333322 246677888888888999999
Q ss_pred hhhhhhhh---chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHh
Q 013411 157 GTISARFI---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVH 233 (443)
Q Consensus 157 g~~l~~~~---~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (443)
+|.+++.+ +|+..|++.+++.++..+..++..||++++.+.++ + +++++++.+.++..+
T Consensus 157 ~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~------~~~~~~~~~~~~~~~ 218 (420)
T PRK09528 157 CAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDAPSTAKVAN------------A------LGANASAVSLKDALA 218 (420)
T ss_pred HHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccccchhhhcc------------c------hhcccccccHHHHHH
Confidence 99888876 79999998888777655554344444322211000 0 000011223444444
Q ss_pred hhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHc---CcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHH
Q 013411 234 LLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKF---HFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLS 310 (443)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 310 (443)
.+ ++|.++...+..+.....+.....+.|.|+.+.+ +.+..+.+...+...+...++.+ ..+++.||+++|+.+.
T Consensus 219 ~l-~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~ 296 (420)
T PRK09528 219 LL-KLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMF-FAPFIINRIGAKNALL 296 (420)
T ss_pred Hc-cCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcchhhH
Confidence 44 4555555454444444444455556777776543 55667788888888888888884 5589999999999999
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhH-HhHHHHHHHHHhHHhHHHHH
Q 013411 311 FGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGC-ISGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~ 388 (443)
.+.++.+++..++.+.++.+..+. ..+.+.+.+...+....++.+.+|++.+++..+. .++...+|..++|.+.|++.
T Consensus 297 ~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~ 376 (420)
T PRK09528 297 LAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY 376 (420)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 988888888888777777665444 3444666666667777888999999999988766 67778899999999999999
Q ss_pred HhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhhc
Q 013411 389 ALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIRV 424 (443)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (443)
|..+ + ...+...+++.++...+.+...+
T Consensus 377 ~~~G-~-------~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 377 DSIG-F-------QGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HhhC-c-------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 9853 1 33455555555555544444443
No 67
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=100.00 E-value=5.4e-31 Score=244.27 Aligned_cols=332 Identities=14% Similarity=0.111 Sum_probs=251.6
Q ss_pred hhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhc
Q 013411 19 FSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYS 98 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~ 98 (443)
.......|.+|.+. ++++.+..+.|++.+.+.++..+++++.|+++||+|||+++.++.++..++.+.+ .+
T Consensus 14 ~~~~~~~~~lp~l~--------~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~ 84 (355)
T TIGR00896 14 PALTSVGPLLPQIR--------SALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA 84 (355)
T ss_pred CccccCcccHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh
Confidence 34466778888884 4478888999999999999999999999999999999999999998888887777 66
Q ss_pred cCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh------chhhHHHH
Q 013411 99 RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI------STSAAFQA 172 (443)
Q Consensus 99 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~------~w~~~f~~ 172 (443)
++ ++.+++.|++.|+ +.+...+....++.|++| ++|+++++..+....+|..+++.++..+ +||+.|..
T Consensus 85 ~~---~~~l~~~~~~~g~-g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~ 159 (355)
T TIGR00896 85 PG---TALLFAGTALIGV-GIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAW 159 (355)
T ss_pred cc---HHHHHHHHHHHHH-HHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 77 8899999999999 888877778888899886 6899999999999999988887776543 38888877
Q ss_pred HHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHH
Q 013411 173 ATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSN 252 (443)
Q Consensus 173 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (443)
.+...++.. ...+||.+++++++ ++.++...++. .++|.++...+..++..
T Consensus 160 ~~~~~~~~~---~~~~~~~~~~~~~~----------------------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 210 (355)
T TIGR00896 160 WALPALLAL---LAWIPQVRRRVAAN----------------------QTTTRLTPVRI----WRSPLAWQVTVFFGLQS 210 (355)
T ss_pred HHHHHHHHH---HHHhhhhccccCCC----------------------CCCCCCCCchh----hcCHhHHHHHHHHHHHH
Confidence 665443322 23345443221100 00000112222 25666666666666666
Q ss_pred hhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccchHHHHHHHHHHHHHHHHHhhcchhH
Q 013411 253 LADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV-GEARLLSFGLLFGCVHMFLYSVAWSSWV 331 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (443)
..+.....++|.|+++ .|+++.+.+...+...++.++++++. +++.||+ +||+.+..+..+..++...+.+..+...
T Consensus 211 ~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~-g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T TIGR00896 211 GLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLI-PALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGL 288 (355)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhH-HHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 6677778899999987 59999999999999999999999555 7999999 5666777777777777666655444333
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCC-CCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCC
Q 013411 332 PYAAAVFSILSVFSHPCLRTIVSKQVA-SNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDR 395 (443)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 395 (443)
.....+++++.+...+...+...+..+ ++++++..++.+...+++..++|.+.|.+.|+.+++.
T Consensus 289 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 289 WAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 334556788888888887777665554 5677999999999999999999999999999976543
No 68
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=100.00 E-value=1.4e-30 Score=245.38 Aligned_cols=350 Identities=13% Similarity=0.074 Sum_probs=243.7
Q ss_pred HHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHH
Q 013411 16 VHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAIL 95 (443)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~ 95 (443)
.+.++.....+..+.+.++...+ .+|...+........+...++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 4 VEWFDFYLYGFAAVLVFHTFFPP-SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555553221 11111212222223344555566899999999999999999999999999999999
Q ss_pred HhccCCch-----hHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhh--------
Q 013411 96 AYSRSRNF-----FYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR-------- 162 (443)
Q Consensus 96 ~~~~~~~~-----~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~-------- 162 (443)
+++++.+. .+.+++.|+++|+ +.+...+...+++.|++|+++|++..+..+.+..+|.++++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~ 161 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGF-SLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD 161 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHh-hccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99988211 1258899999999 989888999999999999999999999999999999999887653
Q ss_pred ----hhchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccC
Q 013411 163 ----FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS 238 (443)
Q Consensus 163 ----~~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (443)
..+||+.|.+.+.+.++.. ......||+++++++ ++++++.+.+.++.. +++
T Consensus 162 ~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~---~~~ 217 (394)
T TIGR00883 162 DALLEWGWRIPFLVSAVLVLIGL-YLRRNLEETPVFEKA--------------------QEKHKKKRGPIRETL---TKH 217 (394)
T ss_pred HHhhccchHHHHHHHHHHHHHHH-HHHHhcCCChhHHHH--------------------HhccccccCCHHHHH---Hhc
Confidence 2479999988776655433 333556665433220 000111122333322 222
Q ss_pred h-hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Q 013411 239 P-TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC 317 (443)
Q Consensus 239 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (443)
+ .++......++..........+.|.|.++.+|.++.+.+.......+...++.++ .+++.||++||+.+.....+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~dr~g~~~~~~~~~~~~~ 296 (394)
T TIGR00883 218 RKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPL-SGALSDRIGRRPVLIIFTVLAA 296 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHhchHHHHHHHHHHHH
Confidence 2 3555556666666667777888999998888999999999999999999999854 4799999999997765544433
Q ss_pred HHH-HHH-Hhh--cchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHh-HHHHHHHHHhHHhHHHHHHhh
Q 013411 318 VHM-FLY-SVA--WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCIS-GICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 318 ~~~-~~~-~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~-~~~~~g~~~~~~~~g~l~~~~ 391 (443)
+.. ... ... .+.+.... ..+.+++.+...+...+++.|.+|+++|+++.++.+ ....+|..++|.+.|.+.|+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~ 376 (394)
T TIGR00883 297 LLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT 376 (394)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc
Confidence 322 222 222 23333333 444566777788889999999999999999999854 555678889999999999985
Q ss_pred h
Q 013411 392 L 392 (443)
Q Consensus 392 ~ 392 (443)
+
T Consensus 377 g 377 (394)
T TIGR00883 377 G 377 (394)
T ss_pred C
Confidence 4
No 69
>PRK11010 ampG muropeptide transporter; Validated
Probab=100.00 E-value=7.5e-30 Score=244.91 Aligned_cols=377 Identities=13% Similarity=0.095 Sum_probs=266.5
Q ss_pred CCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccccc-----ccc
Q 013411 4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-----GRK 78 (443)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----Grr 78 (443)
+|+...++...+...+...+..+.+|.+.++ .+.+..++|.. +...... ++.+++|+++||+ |||
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~--------~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grr 80 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMTV--------ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRR 80 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCc
Confidence 4556667777777888888999999998665 35666677775 3333443 6889999999999 999
Q ss_pred hh-hHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhh
Q 013411 79 AL-LTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCG 157 (443)
Q Consensus 79 ~~-~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g 157 (443)
|. ++.+.+..+++...+++.+...+++.+.+.+++.|+ +.+...+...+++.|++|+|||+++.++...+..+|.+++
T Consensus 81 r~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~-~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg 159 (491)
T PRK11010 81 RGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAF-CSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVS 159 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 86 557777777787777776443348889999999999 8888889999999999999999999999999999999988
Q ss_pred hhhhhh-----hchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHH
Q 013411 158 TISARF-----ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMV 232 (443)
Q Consensus 158 ~~l~~~-----~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (443)
+.++.. .|||..|++.+++.++..+.. ++.||+++++++++ +.+++...++++
T Consensus 160 ~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~-~~~~e~~~~~~~~~-------------------~~~~~~~~~l~~-- 217 (491)
T PRK11010 160 GGLALWLADRYLGWQGMYWLMAALLIPCIIAT-LLAPEPTDTIPVPK-------------------TLEQAVVAPLRD-- 217 (491)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCcccccccc-------------------chhhhHHHHHHH--
Confidence 865543 489999999988777654444 45787643211000 000000112333
Q ss_pred hhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHH-HHHHHHHHHHHHHHHHhhhhcccchHHHH
Q 013411 233 HLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMV-IAGIAGTISQLIMMPVLAPTVGEARLLSF 311 (443)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 311 (443)
.+ +++..+...+..++..........+.++|+.+.+|+++.+.+.... ...++.+++. +++|++.||+++|+.+..
T Consensus 218 -~~-~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~-ll~G~L~dr~g~~~~l~i 294 (491)
T PRK11010 218 -FF-GRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGA-LYGGILMQRLSLFRALMI 294 (491)
T ss_pred -HH-cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHH
Confidence 23 3444554555555555555666677888887778999999999875 4456777887 566899999999887776
Q ss_pred HHHHHHHHHHHH---Hhhc-chhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHH
Q 013411 312 GLLFGCVHMFLY---SVAW-SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSP 386 (443)
Q Consensus 312 ~~~~~~~~~~~~---~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 386 (443)
+.++..+....+ .... +.+.... ..+..+..+...+...++..+..|++.+++.+|+.+....+|..+++.+.|.
T Consensus 295 ~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~ 374 (491)
T PRK11010 295 FGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGW 374 (491)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655544433222 2222 2222222 2333444555667778999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhhc
Q 013411 387 LTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIRV 424 (443)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (443)
+.|..+ + ...+.+.+++.+.+.+.....++
T Consensus 375 l~~~~G-------~-~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 375 FVEAHG-------W-PTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHhC-------h-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999752 1 33566666777776666655543
No 70
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=100.00 E-value=3.1e-31 Score=247.34 Aligned_cols=343 Identities=15% Similarity=0.164 Sum_probs=248.8
Q ss_pred cchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHH
Q 013411 6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI 85 (443)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~ 85 (443)
..+..++..++.........|.+|.+++ ++++.+..+.|++.+.+.++..+++++.|+++||+|||+.++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 74 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIK-------DDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL 74 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHH-------HHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 3456677777888888888999896443 357888899999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHhcc-CCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhh---
Q 013411 86 TLSIIPLAILAYSR-SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA--- 161 (443)
Q Consensus 86 ~~~~i~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~--- 161 (443)
++..++.+++++++ + ++.+++.|+++|+ +.+. .+....++.|++|+++|++++++.....++|..+++.++
T Consensus 75 ~~~~i~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l 149 (366)
T TIGR00886 75 LLLAIPCLWAGLAVQS---YSVLLLLRLFIGI-AGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI 149 (366)
T ss_pred HHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-hchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999998 8 9999999999999 7554 466788999999999999999999866666665554443
Q ss_pred -hh----------hchhhHH-HHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchh
Q 013411 162 -RF----------ISTSAAF-QAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSID 229 (443)
Q Consensus 162 -~~----------~~w~~~f-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (443)
.. .+||+.| ...+++..+..++.....+|+|+++++++..+. ... +...++...+
T Consensus 150 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~~~~ 216 (366)
T TIGR00886 150 IGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSF------KGA-------RWSVGTGALG 216 (366)
T ss_pred HHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhccc------ccc-------cccccchhHH
Confidence 32 2799999 444555555555555666776543321110000 000 0000001112
Q ss_pred HHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHH
Q 013411 230 DMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLL 309 (443)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 309 (443)
+..+.+ ++|.++...+..++..........+.|.|+++.+|+++.+.+.+.....+..+++. ++.+++.||+++|+.+
T Consensus 217 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~ 294 (366)
T TIGR00886 217 DQLKVF-RDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLAR-PLGGAISDRLGGARKL 294 (366)
T ss_pred HHHHHH-hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHh-hccchHHHhhccchhH
Confidence 233333 45556666666666666667788889999999999999999988888999999998 5558999999998887
Q ss_pred HHHHHHHHHHHHHHHhhc----chhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHH
Q 013411 310 SFGLLFGCVHMFLYSVAW----SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFA 376 (443)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 376 (443)
..+......+..++.... +.+.... ..+..+..+...+..++...+..| +++|++.|+.+..+++|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 295 LMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 777666665555444322 2222222 334455666667778888888887 79999999999887765
No 71
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-33 Score=246.66 Aligned_cols=362 Identities=15% Similarity=0.174 Sum_probs=261.8
Q ss_pred CcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHH
Q 013411 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP 84 (443)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~ 84 (443)
+....+++...+...+.+.+..+.+.. ++.++++++..|++.+.+.+.+++.+|+.|+++|||+||+++.+|
T Consensus 33 ~~l~il~~vnlmny~Dr~~iagv~~~v--------~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG 104 (493)
T KOG1330|consen 33 LTLVILCLVNLMNYADRYTIAGVLKEV--------QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVG 104 (493)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHH--------HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeH
Confidence 345566778888888887777666655 566889999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh
Q 013411 85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI 164 (443)
Q Consensus 85 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~ 164 (443)
..++.++.++++++.. ||+++++|.+.|+ |.+.+.|+.+++++|.+|+++|++++++++.+..+|..+|.+.+..+
T Consensus 105 ~~iW~~Av~~~~fs~~---Fwq~~l~R~~vGi-GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~v 180 (493)
T KOG1330|consen 105 IFIWTLAVFASGFSNH---FWQVLLCRGFVGI-GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVV 180 (493)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHhcc-chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeee
Confidence 9999999999999977 9999999999999 99999999999999999999999999999999999988887777654
Q ss_pred -----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccCh
Q 013411 165 -----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSP 239 (443)
Q Consensus 165 -----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (443)
.|||.|...+++.++..++.+++.+|+++.++++ .+.+.+........++|++... +++
T Consensus 181 a~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~---------------~~~~~~~~~~~ts~~kDl~~l~-~~~ 244 (493)
T KOG1330|consen 181 ASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE---------------VDGENKMVKPFTSVWKDLKVLA-KIK 244 (493)
T ss_pred ccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccc---------------cccCCcCCCCccchHHHHHHHH-ccC
Confidence 4999999999999999999989999977643200 0000001122333466655444 445
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHH---HcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc----hHHHHH
Q 013411 240 TFSQAAIVAFLSNLADAGLQGSMMYYLKA---KFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEA----RLLSFG 312 (443)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~ 312 (443)
.+....+......+....+.-|.|.+... ..|++..+...+..+...++.+|. +.+|.++||+.|+ ......
T Consensus 245 v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGv-l~Ggiisd~~~~~~~~~~~~~~~ 323 (493)
T KOG1330|consen 245 VFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGV-LFGGIISDKLSRIFPNSGTLRAS 323 (493)
T ss_pred ceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhh-eehHHHHHHHHHhcccccchhHH
Confidence 55555555555555555555555555443 336666666667777777778887 6778889985331 122222
Q ss_pred HHHHH-------HHHHHHHhhcc--hhHHHHHHHHHHhhhhhh-hHHHHHHHhcCCCCcchhHHhHHhHHHH-HHHHHhH
Q 013411 313 LLFGC-------VHMFLYSVAWS--SWVPYAAAVFSILSVFSH-PCLRTIVSKQVASNEQGKAQGCISGICS-FANLVSP 381 (443)
Q Consensus 313 ~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~~~ 381 (443)
.+.++ ....+.....+ .+..++.++++....... .....+..+.+|+++|.++.++-..+.. +|.+-+|
T Consensus 324 q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p 403 (493)
T KOG1330|consen 324 QLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASP 403 (493)
T ss_pred HHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCc
Confidence 22221 11222222222 222333444454444433 4556678899999999999999988776 4566667
Q ss_pred HhHHHHHHhhhcCC
Q 013411 382 LAFSPLTALFLSDR 395 (443)
Q Consensus 382 ~~~g~l~~~~~~~~ 395 (443)
.+.|.+.|+..++.
T Consensus 404 ~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 404 YIVGILSDKLRGYK 417 (493)
T ss_pred ceehhHHHHhhCCC
Confidence 79999999875554
No 72
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=100.00 E-value=5.6e-30 Score=241.32 Aligned_cols=373 Identities=12% Similarity=0.075 Sum_probs=264.1
Q ss_pred hhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccccccc-chhhHHHHHH
Q 013411 9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGR-KALLTVPITL 87 (443)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Gr-r~~~~~~~~~ 87 (443)
.+.+..++.+..+++..|.++.++.+ +++.+..+.|++.+++.++..++++++|+++||+|| |+++.++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~ 78 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSK-------TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFA 78 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 46677788888999999999988766 367888899999999999999999999999999965 7788888888
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhh--------cCCCCCcchhHHHHHHHHhhhhhhhhhh
Q 013411 88 SIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVA--------DNVPPGRRASVFGIFSGIVSGAFVCGTI 159 (443)
Q Consensus 88 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 159 (443)
.+++..+..+.++ ++.+.+.|++.|+ +.+...+...++.. |..+...|.+..| .+|.++||.
T Consensus 79 ~~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~ 148 (418)
T TIGR00889 79 GALLLFFAAQVTT---PAGMFPVLLANSL-AYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMW 148 (418)
T ss_pred HHHHHHHHHHhcC---HHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHH
Confidence 8888888888888 8999999999998 77766666655432 3333345555555 357777777
Q ss_pred hhhhhch---hhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhc
Q 013411 160 SARFIST---SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLK 236 (443)
Q Consensus 160 l~~~~~w---~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (443)
+++.++. +.+|++.+++.++..+. .+.+||+|+++++++ . ..+ +..+.+.++ ..
T Consensus 149 l~g~l~~~~~~~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~--------------~---~~~-~~~~~~~~~----~~ 205 (418)
T TIGR00889 149 AVSLLDIELSNIQLYITAGSSALLGVF-ALTLPDIPVAKSTAK--------------M---SIK-VMLGLDAFI----LF 205 (418)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHH-HhcCCCCCCCccccc--------------c---CHH-HHhhhhHHH----Hh
Confidence 7776532 23566776666665543 467888754322100 0 000 000011122 23
Q ss_pred cChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcCh--------hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchH
Q 013411 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNK--------NQFADLMVIAGIAGTISQLIMMPVLAPTVGEARL 308 (443)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 308 (443)
|+|.++...+..++..........+.+.|.++. |.++ ...+...+...+..+++..+. +++.||+|+|++
T Consensus 206 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~-g~l~dr~g~r~~ 283 (418)
T TIGR00889 206 KNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTI-PFFLKRFGIKKV 283 (418)
T ss_pred cCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHhCcHHH
Confidence 566666666666666665556667778888764 5443 566888999999999998444 799999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc-h---hHHH-HHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHh-HHHHHHHHHhHH
Q 013411 309 LSFGLLFGCVHMFLYSVAWS-S---WVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCIS-GICSFANLVSPL 382 (443)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~-~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~-~~~~~g~~~~~~ 382 (443)
+..+.++.+++...+....+ . +..+ ..++.+++.+...+....++.|.+|+++|++++|+.+ ....+|..++|.
T Consensus 284 l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~ 363 (418)
T TIGR00889 284 MLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYI 363 (418)
T ss_pred HHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999988888766665322 1 2222 2455677777778888899999999999999999997 567899999999
Q ss_pred hHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhhcC
Q 013411 383 AFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIRVA 425 (443)
Q Consensus 383 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
+.|.+.|+.++... +++ ...+.+.+++.+++.+..+...++
T Consensus 364 l~G~l~~~~g~~~~-~~~-~~~f~~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 364 LSGVMVEKMFAYGT-FDW-QTMWLFFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred HHHHHHHHhccccC-Cch-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999998643110 011 235555666666666655555543
No 73
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=100.00 E-value=1.3e-29 Score=237.18 Aligned_cols=339 Identities=15% Similarity=0.061 Sum_probs=253.0
Q ss_pred hhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccc----hhhHHH
Q 013411 9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRK----ALLTVP 84 (443)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr----~~~~~~ 84 (443)
+.....+...++.++..|.+|.+.++ ++.|..+.|++.+++.++..++++++|+++||+||| +.+.+.
T Consensus 8 ~~~~~~~~~~~~~g~~~p~l~~~l~~--------~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~ 79 (382)
T PRK11128 8 WLALSYFGYFFAYGVFLPFWSVWLKG--------QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALL 79 (382)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHh--------cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHH
Confidence 33444666667789999999999755 577889999999999999999999999999999994 333322
Q ss_pred HHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh
Q 013411 85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI 164 (443)
Q Consensus 85 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~ 164 (443)
.... .......+++ +|.+++.|++.|+ +.+...|...+++.|+ +++|+++++......++|..+||++++.+
T Consensus 80 ~~~~--~~~~~~~~~~---~~~l~i~~~l~g~-~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l 151 (382)
T PRK11128 80 TLLF--AVAFWFGAHS---FWLLFVAIGLFNL-FFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKL 151 (382)
T ss_pred HHHH--HHHHHHhccc---HHHHHHHHHHHHH-HHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 2221 2223344567 8999999999998 8888888888888876 35688888888888899999999988764
Q ss_pred ----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChh
Q 013411 165 ----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPT 240 (443)
Q Consensus 165 ----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (443)
+||..|++.+...++..+ ..+..||+++++++ +++.++..+++++ +.|+|.
T Consensus 152 ~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~----i~~~~~ 206 (382)
T PRK11128 152 VSWFGEQAILWILTAGVASMLL-GQLLRPTIMPQGES--------------------RQQESAGWPAWKA----LLKEPT 206 (382)
T ss_pred HHHcChhHHHHHHHHHHHHHHH-HHHccCCCCCcccc--------------------ccccccccchHHH----HHcChh
Confidence 899999887765444333 33444543222110 0000001123333 236777
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 013411 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM 320 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 320 (443)
++......++..........+.|.|.++ .|.++.+.|.+.+...+..++... ..+++.||+++|+.+..+....+++.
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~l~~~~~~~~~~~ 284 (382)
T PRK11128 207 VWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFA-FSNRLFRRWSARDLLLLSAICGVVRW 284 (382)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 8777777777777777777888999976 699999999999988888888884 44799999999999999998888888
Q ss_pred HHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHH-HHHHHHHhHHhHHHHHHhh
Q 013411 321 FLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGI-CSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 321 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l~~~~ 391 (443)
+.+...++.+..+. .++.+++.+...+....+..+. +++++++.++..+.. ...|..++|.+.|.+.|..
T Consensus 285 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~ 356 (382)
T PRK11128 285 GLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL 356 (382)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777665554 5666888888888888888886 556779999988744 5677799999999999985
No 74
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.98 E-value=1e-30 Score=226.09 Aligned_cols=355 Identities=19% Similarity=0.263 Sum_probs=250.0
Q ss_pred cccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCC
Q 013411 22 SMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSR 101 (443)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~ 101 (443)
+-..|..-..++++.....++.+.+....|.+.+.+++++.+.++.+|.++||+|||++++++.+..+++..+.+.++|
T Consensus 42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~- 120 (451)
T KOG2615|consen 42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN- 120 (451)
T ss_pred cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4444444444444222223333467788999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhhch------hhHHHH---
Q 013411 102 NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFIST------SAAFQA--- 172 (443)
Q Consensus 102 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~w------~~~f~~--- 172 (443)
+..++++|++.|+ ..|.. .+..++++|..++|+|+++++.++..+++|.++||.+|+++.- +.+|..
T Consensus 121 --F~afv~aR~l~Gi-~kgnl-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~ 196 (451)
T KOG2615|consen 121 --FAAFVLARFLGGI-FKGNL-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCL 196 (451)
T ss_pred --HHHHHHHHHhhhh-ccCch-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHH
Confidence 9777778999999 87776 6799999999999999999999999999999999999998743 233333
Q ss_pred -HHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccCh------hhHHHH
Q 013411 173 -ATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSP------TFSQAA 245 (443)
Q Consensus 173 -~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 245 (443)
..+++..-.....+++||+-+.+++.+......+..+++ .+..+.++......+++.| .+....
T Consensus 197 ~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~---------~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~ 267 (451)
T KOG2615|consen 197 LVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAADDR---------LALLKFARIFKVAALRNPPLLDFISVLRIFG 267 (451)
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhhhh---------hhhcchhhhhhhhhhcCccccchHHHHHHHH
Confidence 222222223345578999866544321000000000000 0000001111111121111 223344
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cchHHHHHHHHHHHHHHHH
Q 013411 246 IVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVG--EARLLSFGLLFGCVHMFLY 323 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 323 (443)
+..+.+...+.++..+.+.+..+.+|+++.+.|.+++..++...+.+... ....+|.. .+-.+..+..++.-.++++
T Consensus 268 l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~-~~~l~~~~~~~~a~l~~~l~~~vP~~lll 346 (451)
T KOG2615|consen 268 LHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLAL-VPILPRYKGNIKAVLLFSLLLIVPAFLLL 346 (451)
T ss_pred HHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhc-cccccccccchhhHHHHHHHHHHHHHHHH
Confidence 45555666666666666666678899999999999999999999988555 34556544 3445555555555555556
Q ss_pred HhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 324 SVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 324 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
........... ..+..+......+....+..+..|+++||+++|+....+.++.++||.+.|.+..+.
T Consensus 347 s~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 347 SLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred hccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 66555544444 556677777888999999999999999999999999999999999999999888774
No 75
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.97 E-value=1.9e-29 Score=268.52 Aligned_cols=359 Identities=16% Similarity=0.124 Sum_probs=263.7
Q ss_pred CCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhH
Q 013411 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT 82 (443)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~ 82 (443)
+.+....+++..++..++.......+..+..... +.+.+....+++.+++.++..++++++|+++||+|||++++
T Consensus 7 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~ 81 (1146)
T PRK08633 7 KIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAY-----DGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIR 81 (1146)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHH
Confidence 3455566666777766665444444443433321 12334566899999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHH---hccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhh
Q 013411 83 VPITLSIIPLAILA---YSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTI 159 (443)
Q Consensus 83 ~~~~~~~i~~~~~~---~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 159 (443)
.+.++..+..++.. .+++ ++.+++.|+++|+ +.+...++..+++.|++|+++|++++++.+.+..+|.++|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~ 157 (1146)
T PRK08633 82 IVKLFEVGLTLLIVLAYYLGW---FWLAFAVTFLLGA-QSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTA 157 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHH-HHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHH
Confidence 98877666555444 3466 8999999999999 999999999999999999999999999999999999999999
Q ss_pred hhhhhc-------------hhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCC
Q 013411 160 SARFIS-------------TSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLP 226 (443)
Q Consensus 160 l~~~~~-------------w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (443)
+++.+. |++.+.+..+...+..++..+.+||+++.++..+ + .+......
T Consensus 158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------~~~~~~~~ 219 (1146)
T PRK08633 158 LFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF--D----------------KKKYLFPK 219 (1146)
T ss_pred HHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc--c----------------ccccccHH
Confidence 887652 2333333333333333444456777665432100 0 00000001
Q ss_pred chhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChh-hHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 013411 227 SIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKN-QFADLMVIAGIAGTISQLIMMPVLAPTVGE 305 (443)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (443)
..++.++.+++++.++...+..++..........++|.|+++.+|++.. +.+++.+..+++.+++.++ .+++.||+++
T Consensus 220 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~-~g~l~~r~~~ 298 (1146)
T PRK08633 220 LLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLL-AGRLSGRHIE 298 (1146)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHhCCceE
Confidence 1122233344677777776666666666667778899999998999998 8999999999999999854 4799999999
Q ss_pred chHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhH
Q 013411 306 ARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAF 384 (443)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~ 384 (443)
++.+.++.++.+++.+++.+..+.+...+ .++++++.+...+...+++.+..|++.||+++|+.+++.+++..+++.+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~ 378 (1146)
T PRK08633 299 LGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALT 378 (1146)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 98888888888777777766665554433 55667788888888999999999999999999999999999998888777
Q ss_pred HHHHH
Q 013411 385 SPLTA 389 (443)
Q Consensus 385 g~l~~ 389 (443)
+.+..
T Consensus 379 ~~l~~ 383 (1146)
T PRK08633 379 TLFSG 383 (1146)
T ss_pred HHHHH
Confidence 66544
No 76
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.97 E-value=1.6e-29 Score=268.10 Aligned_cols=360 Identities=12% Similarity=0.068 Sum_probs=262.1
Q ss_pred CCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhH
Q 013411 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT 82 (443)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~ 82 (443)
+++.+..++...++..++.++....++.+...... .+.-..+....++..+++.+++++.++++|+++||+|||+++.
T Consensus 9 ~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~ 86 (1140)
T PRK06814 9 KSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLS--GALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAK 86 (1140)
T ss_pred hccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHH
Confidence 34556677788888888776654443333222111 1111123356789999999999999999999999999999764
Q ss_pred H---HHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhh
Q 013411 83 V---PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTI 159 (443)
Q Consensus 83 ~---~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 159 (443)
. ..+...+..+.....++ +++++++|+++|+ +.+...|+..+++.|++|+++|++++++.+++.++|.++||+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~s---~~~l~~~~~l~gi-~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~ 162 (1140)
T PRK06814 87 ILKFAEIGIAALAIYGFHLNS---VPLLFAALFLMGI-HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTI 162 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHH
Confidence 3 22222232333334467 9999999999999 999999999999999999999999999999999999999999
Q ss_pred hhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhh
Q 013411 160 SARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLL 235 (443)
Q Consensus 160 l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (443)
+++++ +|++.|....+..++ .++..+++|++++.++..+. .........+.++.+
T Consensus 163 l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~ 221 (1140)
T PRK06814 163 IGGLATISGNFVILVALLMGIAVL-GWLASLFIPKTGNAAPDLKI--------------------DRNIIRSTITLLKYA 221 (1140)
T ss_pred HHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCCCCCCCCCee--------------------ccchHHHHHHHHHHH
Confidence 99876 788888444444433 44455667766443221000 000000122234445
Q ss_pred ccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH
Q 013411 236 KSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLF 315 (443)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 315 (443)
++++.++...+..++.++.......++|.|+++.+|.++.+.|.+.+..+++.+++.++. +++.|+..+++.+..+.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~-g~l~~~~~~~~~~~~~~~~ 300 (1140)
T PRK06814 222 KADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLA-SKLSEGRITLLYVPIGALL 300 (1140)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH-HHHhCCceeeeeehHHHHH
Confidence 578888888888777777777888899999999999999999999999999999999555 7898887766665555555
Q ss_pred HHHHHHHHHhh--------------------cchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHH
Q 013411 316 GCVHMFLYSVA--------------------WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS 374 (443)
Q Consensus 316 ~~~~~~~~~~~--------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 374 (443)
.+++.+.+.+. .+.|...+ .++++++.+...+...+++++.+|++.+|+++|+.++...
T Consensus 301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~ 380 (1140)
T PRK06814 301 MGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNA 380 (1140)
T ss_pred HHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHH
Confidence 55444433332 33343333 5566888888888899999999999999999999999999
Q ss_pred HHHHHhHHhHHHHHHh
Q 013411 375 FANLVSPLAFSPLTAL 390 (443)
Q Consensus 375 ~g~~~~~~~~g~l~~~ 390 (443)
++..+++.+.|.+.+.
T Consensus 381 ~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 381 AFMVAGTIILALLQAL 396 (1140)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
No 77
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.97 E-value=5.4e-29 Score=234.30 Aligned_cols=376 Identities=12% Similarity=0.052 Sum_probs=262.3
Q ss_pred CcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHH
Q 013411 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP 84 (443)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~ 84 (443)
+..+.+....++...+.+...|.+|.++.+ +++.+..+.|++.+++.++..+++++.|+++||+|||+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~ 74 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHD-------VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWI 74 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 455666777888888899999999999766 3577888999999999999999999999999999999999887
Q ss_pred HHHhHHHHHHH---HhccC--CchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhh
Q 013411 85 ITLSIIPLAIL---AYSRS--RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTI 159 (443)
Q Consensus 85 ~~~~~i~~~~~---~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 159 (443)
....+++.... .+.+. ...+..+++.|++.|+ +.+...+....+..|..+ ++++.++......++|.++||.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~ 151 (396)
T TIGR00882 75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGF-VFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCAS 151 (396)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHH
Confidence 76665543322 22221 0113455677889998 878888888888877543 3456677777888899999998
Q ss_pred hhhhh---chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhc
Q 013411 160 SARFI---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLK 236 (443)
Q Consensus 160 l~~~~---~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (443)
+++.+ +||.+|++.+.+.++..++.+...||+|+++++++ ..+.++++.+.++..+.+
T Consensus 152 ~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~l- 212 (396)
T TIGR00882 152 IAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVAN------------------ALGANASAFSLKLALELF- 212 (396)
T ss_pred HHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhc------------------ccccccCCCCHHHHHHHH-
Confidence 88765 89999999988887766555444444432211000 000001112233444444
Q ss_pred cChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHc---CcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHH
Q 013411 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKF---HFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGL 313 (443)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 313 (443)
|+|.++...+..+.....+.....+.+.|+++.+ +.+....|...+...+...++.... +++.||+++|+.+..+.
T Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~-g~l~~r~g~~~~l~~~~ 291 (396)
T TIGR00882 213 RQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCA-PLIINRIGAKNALLIAG 291 (396)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccchhHHHHH
Confidence 5566665555555555555556667788887765 4556667888888888888888444 79999999999999988
Q ss_pred HHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhH-HhHHHHHHHHHhHHhHHHHHHhh
Q 013411 314 LFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGC-ISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
.+.++.........+.+.... ..+.+++..........+..+..|++.+++..+. .+....+|+.++|.+.|++.|..
T Consensus 292 ~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~ 371 (396)
T TIGR00882 292 TIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI 371 (396)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 888887777666666554443 3344555544445556677788888888888776 67888999999999999999985
Q ss_pred hcCCCCCccchhHHHHHHHHHHHHHHH
Q 013411 392 LSDRAPFNFPGFSIMCIGFVSMTAFIQ 418 (443)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (443)
+ + ...+.+.+++.++..+.
T Consensus 372 G-~-------~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 372 G-F-------QGAYLVLGCIVLLFTLI 390 (396)
T ss_pred c-c-------HHHHHHHHHHHHHHHHH
Confidence 2 1 33455555555444433
No 78
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.97 E-value=2.2e-29 Score=233.66 Aligned_cols=317 Identities=12% Similarity=0.060 Sum_probs=234.0
Q ss_pred cccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccccc-----ccchhh-HHHHHHhHHHHHHH
Q 013411 22 SMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-----GRKALL-TVPITLSIIPLAIL 95 (443)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----Grr~~~-~~~~~~~~i~~~~~ 95 (443)
++..+.+|.+.++ +++|..+.|+..+. .+...+ .+++|+++||+ ||||.+ +.+.++.++.....
T Consensus 5 ~~~~~~~~~~~~~--------~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l 74 (356)
T TIGR00901 5 GLVGNTLPYWLRS--------KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL 74 (356)
T ss_pred hhHHhHHHHHHHH--------cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 4556777777544 68888899998755 555554 99999999998 899974 56777788887777
Q ss_pred HhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----c------
Q 013411 96 AYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----S------ 165 (443)
Q Consensus 96 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~------ 165 (443)
++.++....+.+....++.++ +.+...++..+++.|++|+|+|+++.++...+..+|.++++.++..+ +
T Consensus 75 ~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~ 153 (356)
T TIGR00901 75 SFLVPSTDLPLLAGLAFLIAF-FSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLI 153 (356)
T ss_pred HcCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 777554447778888888888 88888899999999999999999999999999999999999888643 6
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChh---
Q 013411 166 --TSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPT--- 240 (443)
Q Consensus 166 --w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 240 (443)
||..|++.++..++..+..++..||++++++. +++ +++ +.++++++ +++++.
T Consensus 154 ~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~-------------~~~---~~~---~~~~~~~~----~~~~~~~~~ 210 (356)
T TIGR00901 154 TLWGYIFFWTALLILPGLLVTLFLAKEPQEDASV-------------PKP---LTQ---AVLKPIRE----FFQRKNMIQ 210 (356)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhccCCCccccc-------------chh---HHH---HHHHHHHH----HHHhcCchH
Confidence 99999999887777555544456764332110 000 000 00012222 223333
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHH-HHHHHHHHHHHHhhhhcccchHHHHHHHHHHHH
Q 013411 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGI-AGTISQLIMMPVLAPTVGEARLLSFGLLFGCVH 319 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 319 (443)
++...+..++..........+.|.|+++ +|+++.+.+......+. ..+++. ++++++.||+|+|+.+..+.++.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~-~~~g~l~~r~g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGG-LIGGIIMQPLNILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5556666666777777888899999988 79999999988877774 556666 66689999999999888888877776
Q ss_pred HHHHHhh-----------cchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHH
Q 013411 320 MFLYSVA-----------WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS 374 (443)
Q Consensus 320 ~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 374 (443)
...+.+. ++.+.... .++.+++.+...+...++.+|.+|+++||+.+|+.++..+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 289 NAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 6655443 22233333 3445788888999999999999999999999999887654
No 79
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.97 E-value=4.4e-28 Score=228.40 Aligned_cols=364 Identities=14% Similarity=0.091 Sum_probs=248.0
Q ss_pred HHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccccc-----ccch-hhHHHH
Q 013411 12 ITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-----GRKA-LLTVPI 85 (443)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----Grr~-~~~~~~ 85 (443)
...+...+..+...+.+|.+.++ .+.|..++|++..+... .+..+++|+++||+ |||| .++.+.
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~--------~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~ 75 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTV--------EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQ 75 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHH
Confidence 33455566677888899999776 47888999999777775 68999999999999 8876 678888
Q ss_pred HHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh--
Q 013411 86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF-- 163 (443)
Q Consensus 86 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-- 163 (443)
++.+++..+.++.+...+++.+++..++.++ ..+...++..+++.|++|+|||+++.++...+.++|.++++.++..
T Consensus 76 ~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 76 VGLAASIAAMAFCPPHAALWPLAGLAVLVAF-LSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8888888887877543337778888888887 7888889999999999999999999999999999999998876544
Q ss_pred ---hchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChh
Q 013411 164 ---ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPT 240 (443)
Q Consensus 164 ---~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (443)
.+||..|++.++..++..+ ..++.||+++++++++ + .. ++.++.++.+.++|.
T Consensus 155 ~~~~gw~~~f~i~a~~~l~~~l-~~~~~~e~~~~~~~~~-------------~----~~------~~~~~~~~~l~~~~~ 210 (402)
T PRK11902 155 DRVLGWGNTYLLMAGLMLAGAL-TTLWAPEPEVPARPPR-------------S----LG------EAVVGPLRDFFSRRG 210 (402)
T ss_pred hcccCHHHHHHHHHHHHHHHHH-HHHhcCCCcccccccc-------------h----hH------HHHHHHHHHHHhCcC
Confidence 3899999998887766444 3466777644322000 0 00 001111222336777
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHH-HHHHHHHHHHHHhhhhcccchHHHHHHHHHHHH
Q 013411 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGI-AGTISQLIMMPVLAPTVGEARLLSFGLLFGCVH 319 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 319 (443)
++..++..++..........+.++++.+.+|+++.+.+......+. +.+++. ++++++.||+++|+.+..+..+..+.
T Consensus 211 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~-~~~g~l~~r~g~~~~l~~~~~~~~l~ 289 (402)
T PRK11902 211 AWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGA-LAGGTLMVRLGLYRSLMLFGVLQAVS 289 (402)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7766666665555444333455666777789999999998766555 467777 55589999999998877766665554
Q ss_pred HHHH---Hhhc-chhHHHHH-HH----HHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 320 MFLY---SVAW-SSWVPYAA-AV----FSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 320 ~~~~---~~~~-~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
.+.+ ...+ +.+..... .+ .++..+...+....++.+.+| ++..+..+....++...++.+.|.+.|.
T Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~G~l~~~ 365 (402)
T PRK11902 290 NLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS----ATQYALLSALASVGRVYVGPTSGYLVEA 365 (402)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 2332 33333332 22 233334444555555555555 4455666666677777777789999998
Q ss_pred hhcCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 391 FLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
.+. ...+...+.+.+++....++.+
T Consensus 366 ~G~--------~~~f~~~~~~~~~~~~~~~~~~ 390 (402)
T PRK11902 366 YGW--------PGFYLMTVVIALPGLALLWLMR 390 (402)
T ss_pred hCh--------HHHHHHHHHHHHHHHHHHHHHh
Confidence 631 3355666666666665555444
No 80
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-29 Score=219.87 Aligned_cols=351 Identities=17% Similarity=0.139 Sum_probs=273.7
Q ss_pred hhhHHHHHHHHhhhcccccchhHHHHhhcC------------------------------------------CCCcchhh
Q 013411 8 SHLFITIFVHCFSTSMVAPAITDVTMSAVC------------------------------------------PGRDECSL 45 (443)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~ 45 (443)
..+.+..+++.+....+.|.+|.+..|.-. ....+.+.
T Consensus 24 viv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~ 103 (464)
T KOG3764|consen 24 VIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISLDR 103 (464)
T ss_pred EEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCccc
Confidence 355788888888899999999999998442 00234556
Q ss_pred hHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhh
Q 013411 46 AIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCL 125 (443)
Q Consensus 46 s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 125 (443)
+.+++|++.+...+.+.+.+++.|.+.||+|+|-.++++.++...+++++++.++ +++++++|.+||+ |.+....+
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s---y~~l~vAR~LQgv-gsA~~~ts 179 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS---YPMLFVARSLQGV-GSAFADTS 179 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch---hHHHHHHHHHhhh-hHHHHHhh
Confidence 7789999999999999999999999999999999999999999999999999999 9999999999999 99999999
Q ss_pred hhhhhhcCCCCC-cchhHHHHHHHHhhhhhhhhhhhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccc
Q 013411 126 SLAYVADNVPPG-RRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTP 200 (443)
Q Consensus 126 ~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 200 (443)
..++++|.+|++ +|++++|+...+.++|.++||++|+.+ |.+.+|.+.+.+.++-..+.++.++.++.+++
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~---- 255 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD---- 255 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc----
Confidence 999999999977 689999999999999999999999976 88999999999999887777666654433221
Q ss_pred cccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHH
Q 013411 201 ILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADL 280 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 280 (443)
+..+..++++++ ++|..+.........+.........++.+..|.+.-+.-+.|..
T Consensus 256 --------------------~~~~~~~~~~Ll----~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~ 311 (464)
T KOG3764|consen 256 --------------------STEQGTPMWSLL----MDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLA 311 (464)
T ss_pred --------------------ccccCccHHHHH----hCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeee
Confidence 112233455543 56777666666666666666677778888888877555488999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc--cchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcC
Q 013411 281 MVIAGIAGTISQLIMMPVLAPTVG--EARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQV 357 (443)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 357 (443)
+....+...++..+. +.+.||++ |......+.+..+++.....+.++....++ ....+++.+............++
T Consensus 312 fLp~~~~y~ig~~lf-g~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lv 390 (464)
T KOG3764|consen 312 FLPASLSYAIGTNLF-GKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLV 390 (464)
T ss_pred ecccccchhccCchH-HHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhc
Confidence 999999999999777 79999999 544445555666666666666665544433 33344444444444433333333
Q ss_pred C---CC---cchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 358 A---SN---EQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 358 p---~~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
+ .+ .-|.+.++......+|.++||.++|.+.+..
T Consensus 391 d~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i 430 (464)
T KOG3764|consen 391 DPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI 430 (464)
T ss_pred chhhccccceeeeHHHHHHHHHHHhhhccccccchheeeh
Confidence 3 22 5689999999999999999999999999886
No 81
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.97 E-value=2.1e-27 Score=226.86 Aligned_cols=374 Identities=12% Similarity=0.057 Sum_probs=263.1
Q ss_pred CCCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccc-cccchh
Q 013411 2 EKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK-YGRKAL 80 (443)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~ 80 (443)
++++.++.+++..++..++++...+.+|.|..+. .+++.+..+.|++.+.+.++..++++++|+++|| +|||++
T Consensus 7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~-----~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~ 81 (475)
T TIGR00924 7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQ-----AGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT 81 (475)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH
Confidence 3456677888888898999999999999998652 2378888899999999999999999999999999 899999
Q ss_pred hHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCc---chhHHHHHHHHhhhhhhhh
Q 013411 81 LTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGR---RASVFGIFSGIVSGAFVCG 157 (443)
Q Consensus 81 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g 157 (443)
+.++.++.+++.++.+++++ ++.+++.|.+.|+ +.+...|...++++|++|+++ |++++++.+.+.++|.++|
T Consensus 82 l~~~~~~~~~g~~~~~~~~~---~~~~~~~~~l~g~-g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig 157 (475)
T TIGR00924 82 MVLGGIVLMLGHFMLAMSIY---PDLIFYGLGTIAV-GSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFIS 157 (475)
T ss_pred HHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHH
Confidence 99999999999999999888 8889999999999 989988999999999998764 8889999999999999999
Q ss_pred hhhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCccc-cccccccchhhhhhh-------------------hh
Q 013411 158 TISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDED-LYTPILSSKAEISAS-------------------CE 213 (443)
Q Consensus 158 ~~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~-------------------~~ 213 (443)
|.+++.+ +||+.|.+.++..++..+ .++..++..++.+ +.+..++.+.+.... ..
T Consensus 158 ~~l~g~l~~~~g~~~~f~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (475)
T TIGR00924 158 PLLAGVIAENYGYHVGFNLAAVGMVIGLL-TFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHV 236 (475)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9988765 899999988765544333 3333332211111 000000000000000 00
Q ss_pred hhh--------------hhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhh---
Q 013411 214 EST--------------KKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQ--- 276 (443)
Q Consensus 214 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--- 276 (443)
... ......++.....+ .+|...+..+++...+....+....+.++.+.++..+.+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~i 312 (475)
T TIGR00924 237 VIANILLMTVTLAVIIFFFRLAFKPRLDAVA----RNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSV 312 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHH----HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEE
Confidence 000 00000000000000 001123444555555666666677777788877754444222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhhccc-----chHH--HHHHHHHHHHHHHHHh---------hcchhHHH-HHHHH
Q 013411 277 -FADLMVIAGIAGTISQLIMMPVLAPTVGE-----ARLL--SFGLLFGCVHMFLYSV---------AWSSWVPY-AAAVF 338 (443)
Q Consensus 277 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~ 338 (443)
.+.+.+++++..++.+++.. ++..|.+| +... .++.++.++++..+.. ..+.|... ..++.
T Consensus 313 p~~~~~~~n~~~iil~~p~~~-~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~ 391 (475)
T TIGR00924 313 PVIWFQSLNPFWVVVGSPVLA-MIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQ 391 (475)
T ss_pred CHHHHHhhhHHHHHHHHHHHH-HHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHH
Confidence 67888888888888886653 33333332 3333 6778888777776654 22444334 47778
Q ss_pred HHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 339 SILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
+++.....|..+++..+..|++.||+++|+......+|..+++.+.....+.
T Consensus 392 ~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~ 443 (475)
T TIGR00924 392 TLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP 443 (475)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999888888888887766544
No 82
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.97 E-value=3.5e-28 Score=232.26 Aligned_cols=343 Identities=14% Similarity=0.105 Sum_probs=252.0
Q ss_pred HHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccc----cccch-hhHHHHHHhHHH
Q 013411 17 HCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK----YGRKA-LLTVPITLSIIP 91 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr----~Grr~-~~~~~~~~~~i~ 91 (443)
......+..+.++.+..+ ++++++.+.|++.++..+..++..|+.|+++|| +|||| .++.+....+++
T Consensus 11 ~~~~~~~~~~~l~~~~~~-------~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~ 83 (437)
T TIGR00792 11 NNFIFAIVSTYLLFFYTD-------VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIV 83 (437)
T ss_pred HHHHHHHHHHHHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHH
Confidence 344455555666666554 478899999999999999999999999999997 67755 566788888888
Q ss_pred HHHHHhccCCc---hhHHHHHHHHhhhhhccchhhhhhhhhhhcCC-CCCcchhHHHHHHHHhhhhhhhhhhhh----h-
Q 013411 92 LAILAYSRSRN---FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNV-PPGRRASVFGIFSGIVSGAFVCGTISA----R- 162 (443)
Q Consensus 92 ~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~----~- 162 (443)
.+++...++.+ ....+++.+++.++ +.+...+...++..|.. +++||++..++.+....+|..+++.+. .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~ 162 (437)
T TIGR00792 84 LVLLFTTPDFSATGKLVYAYITYILLGL-FYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSY 162 (437)
T ss_pred HHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877766521 14567778888888 77777777788889988 468999999998888887765543332 1
Q ss_pred ------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhc
Q 013411 163 ------FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLK 236 (443)
Q Consensus 163 ------~~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (443)
..+||+.+.+.+++.++..+...+..||+++++++ +++++.+.++.++.+.
T Consensus 163 ~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~-----------------------~~~~~~~~~~~~~~l~ 219 (437)
T TIGR00792 163 FGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPK-----------------------NIEKKLSLKQIFKALF 219 (437)
T ss_pred hCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCc-----------------------ccccCCCHHHHHHHHh
Confidence 23799999998888887766666777775432110 0011123444455555
Q ss_pred cChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Q 013411 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFG 316 (443)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 316 (443)
++|.++...+..++..........+.+.|.++.++ ++.+.+.+.....++.+++.++. +++.||+|+|+.+..+..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~-~~l~~r~g~~~~~~~~~~~~ 297 (437)
T TIGR00792 220 KNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLF-PRLVKKFGRKILFAGGILLM 297 (437)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCcHHHHHHHHHHH
Confidence 78888877777777777666666666666666555 45566777777788888888444 79999999999999988888
Q ss_pred HHHHHHHHhhc-chhHHHH-HHHHHHhhhhhhhHHHHHHHhcCC-------CCcchhHHhHHhHHHHHHHHHhHHhHHHH
Q 013411 317 CVHMFLYSVAW-SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVA-------SNEQGKAQGCISGICSFANLVSPLAFSPL 387 (443)
Q Consensus 317 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 387 (443)
.++.+.+.+.. +.+.... ..+.+++.+...+..+++.+|..| ++.+|.+.|+.++...+|..+++.+.|.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 298 VLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776665543 2233333 455677788888888999888865 56689999999999999999999999999
Q ss_pred HHhhh
Q 013411 388 TALFL 392 (443)
Q Consensus 388 ~~~~~ 392 (443)
.+..+
T Consensus 378 l~~~G 382 (437)
T TIGR00792 378 LGIIG 382 (437)
T ss_pred HHHcC
Confidence 98854
No 83
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.2e-28 Score=230.77 Aligned_cols=333 Identities=15% Similarity=0.072 Sum_probs=249.3
Q ss_pred CCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhc
Q 013411 39 GRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVC 118 (443)
Q Consensus 39 ~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 118 (443)
.++|.+....+.+.+.+++.+++++++++.|.+.||++-.+.+....+.+++-.++....+| ++.+++.|++.|+ .
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s---~~~~ialr~llGl-~ 147 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS---FPGLIALRFLLGL-F 147 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHH-H
Confidence 36778888889999999999999999999999999999999999999999888888888888 9999999999999 9
Q ss_pred cchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----------chhhHHHHHHHHHHHHHHHHHHhc
Q 013411 119 EGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----------STSAAFQAATAGSIISAVYMRIFL 188 (443)
Q Consensus 119 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----------~w~~~f~~~~~~~~~~~~~~~~~~ 188 (443)
++..+|....+++.|+.++||++.++++.+..++|.++|++++..+ ||||.|.+.+++.++..++.++++
T Consensus 148 es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 148 ESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFL 227 (495)
T ss_pred hcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEe
Confidence 9999999999999999999999999999999999999999988662 899999999999999999999999
Q ss_pred cCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 013411 189 PESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKA 268 (443)
Q Consensus 189 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (443)
|+.|.+.+- +++.+.+...+ +.++...+...++.++++.++.+ ++|.++...+..++.....+++..|+|.|+++
T Consensus 228 p~~P~~~~f---l~~~ek~~~~~-~~~~~~~~~~~~~~~~~~~~~a~-~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~ 302 (495)
T KOG2533|consen 228 PDNPSKAWF---LTDEEKELVVE-RLRESPSGGIENKFKWKGFKEAL-KDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKS 302 (495)
T ss_pred cCChhhccc---cchHHHHHHHH-HHHhccCCCcccccCHHHHHHHH-hchhHHHHHHHHHHHhhccccHHHHHHHHHHc
Confidence 999875420 11001000000 00001111111114556666555 78899999999999999999999999999999
Q ss_pred HcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh----cccchHHHHHHHHHHHHH-HHHHhhcchhHHHHHHH-HHHhh
Q 013411 269 KFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT----VGEARLLSFGLLFGCVHM-FLYSVAWSSWVPYAAAV-FSILS 342 (443)
Q Consensus 269 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~ 342 (443)
..|++..++..+.....++++++.+ +.+.++|| ..+|........+..+.. ..+......+......+ ...+.
T Consensus 303 ~~~~s~~~a~~ls~~~~~~g~v~~i-~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~ 381 (495)
T KOG2533|consen 303 NGGYSELQANLLSTPYDVGGIVGLI-LAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGL 381 (495)
T ss_pred CCCcChHHhccccchHHhhhHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhh
Confidence 6679999999999999999999994 44799999 555655555544443333 44444433333333333 34445
Q ss_pred hhhhhHHHHHHHhcCCCCcchhHHhHH-hHHHHHHHHHhH
Q 013411 343 VFSHPCLRTIVSKQVASNEQGKAQGCI-SGICSFANLVSP 381 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~g~~~~~ 381 (443)
....+......++....+.|....... ....+.++.++|
T Consensus 382 ~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~ 421 (495)
T KOG2533|consen 382 IATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISG 421 (495)
T ss_pred HHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhh
Confidence 566677777788777655554443333 333333443333
No 84
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.97 E-value=6.9e-28 Score=233.21 Aligned_cols=368 Identities=18% Similarity=0.194 Sum_probs=254.3
Q ss_pred HHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhh
Q 013411 48 YLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSL 127 (443)
Q Consensus 48 ~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 127 (443)
.+.+++.+...++.++++++.|+++|++|||+.++++.+.+.++.+++++++| +++++++|+++|+ |.|....+..
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~---~~~l~~GR~l~G~-g~G~~~~~~p 164 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS---WYQLIVGRILTGL-GVGGASVLAP 164 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhcc-chhhhhhcch
Confidence 56799999999999999999999999999999999999999999999999999 9999999999999 9999999999
Q ss_pred hhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh-----chhhHHHHHHHHHHHHHHHHHHhccCCCCccc------
Q 013411 128 AYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-----STSAAFQAATAGSIISAVYMRIFLPESVRDED------ 196 (443)
Q Consensus 128 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~------ 196 (443)
.+++|..|++.||...+..+....+|..++..++... +||..+.+..+.+++..+. .+++||+|++--
T Consensus 165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~ 243 (513)
T KOG0254|consen 165 VYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLE 243 (513)
T ss_pred hhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChH
Confidence 9999999999999999999999999999997777666 6999999999888887776 799999998522
Q ss_pred -cccccccchh--hhhhhhhh--hh-hh--hhh-cccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 013411 197 -LYTPILSSKA--EISASCEE--ST-KK--LQV-FKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLK 267 (443)
Q Consensus 197 -~~~~~~~~~~--~~~~~~~~--~~-~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (443)
+++.+++..+ +.+.+.+. .+ +. +.. ...+..+++..+...+++......+..+.+.........+.+.+++
T Consensus 244 ~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~ 323 (513)
T KOG0254|consen 244 EAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK 323 (513)
T ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHH
Confidence 1222222222 11111110 00 00 000 1111124444321111122222333333333333445556666665
Q ss_pred HHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcc------------hhHHHH-
Q 013411 268 AKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS------------SWVPYA- 334 (443)
Q Consensus 268 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~- 334 (443)
.. |.+... .......++...++. .++..+.||+|||++++.+...+.++.++++.... .+..+.
T Consensus 324 ~~-g~~~~~-~~~~~~~~~v~~~~t-~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (513)
T KOG0254|consen 324 SA-GLKSDT-FLASIILGVVNFLGT-LVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVF 400 (513)
T ss_pred hc-CCCCch-HHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHH
Confidence 54 666443 444556667777777 44368999999999999999999998887765421 111222
Q ss_pred HHHH-HHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHH
Q 013411 335 AAVF-SILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSM 413 (443)
Q Consensus 335 ~~~~-~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (443)
..++ ........|..+.+.+|.+|.+.|+++.++...+++..+.+-......+.+..+ ....+...+..+.
T Consensus 401 ~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~--------~~~~f~~f~~~~~ 472 (513)
T KOG0254|consen 401 LCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG--------IGGTFGYFGGICL 472 (513)
T ss_pred HHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--------ccchHHHHHHHHH
Confidence 2222 333344567778899999999999999999999999888877766666665532 0123333333334
Q ss_pred HHHH-HHHHhhcCCCCCCCCCCcc
Q 013411 414 TAFI-QSIMIRVAPPLPVSSQRVS 436 (443)
Q Consensus 414 ~~~~-~~~~~~~~~~~~~~~~~~~ 436 (443)
.... +.+... ||+|+++.
T Consensus 473 ~~~~~fv~~~~-----pETkg~sl 491 (513)
T KOG0254|consen 473 LSLIIFVFFFV-----PETKGLTL 491 (513)
T ss_pred HHHHHHheEEc-----ccCCCCcH
Confidence 4343 555555 67777665
No 85
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.96 E-value=9.2e-27 Score=204.48 Aligned_cols=344 Identities=14% Similarity=0.142 Sum_probs=277.5
Q ss_pred HHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHH
Q 013411 11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII 90 (443)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i 90 (443)
....++..+......+.+|.+ ++.++++..+.+++..+++.++.+.+++.|++.+|+|+|+.++.+..++++
T Consensus 19 t~lFfl~G~~~~l~diLip~l--------~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~av 90 (422)
T COG0738 19 TSLFFLWGFITCLNDILIPHL--------KEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAV 90 (422)
T ss_pred HHHHHHHHHHhhcchhhHHHH--------HHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444555566677778888877 555889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh------
Q 013411 91 PLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI------ 164 (443)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~------ 164 (443)
+..+..=+.+...+..++++-++.|. |.+...++.+.+++...|+++-.+.+++.+...++|.++||++++.+
T Consensus 91 g~~lF~pAa~~~~y~~FL~~lFila~-Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~ 169 (422)
T COG0738 91 GAALFWPAASSKSYGFFLVALFILAS-GIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA 169 (422)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHh-hhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Confidence 99988644444449999999999999 99999999999999999999999999999999999999999998754
Q ss_pred -----------------chhhHHHHHHHHHHHHHHHH-HHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCC
Q 013411 165 -----------------STSAAFQAATAGSIISAVYM-RIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLP 226 (443)
Q Consensus 165 -----------------~w~~~f~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (443)
.|+++|...+....+..+.. ....||.++.++ ++.+.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~----------------------~~~~~~~~ 227 (422)
T COG0738 170 LTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAP----------------------SLGASGSA 227 (422)
T ss_pred hccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccc----------------------cccccccc
Confidence 25667777766555443322 112232222111 00011111
Q ss_pred chhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 013411 227 SIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEA 306 (443)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (443)
...+ ++++|.++...+..+++-.......++++.|+.+..|.+..+.+...+....+.++++ +++.++.+|+...
T Consensus 228 ~~~~----l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGR-Fig~~lm~~~~~~ 302 (422)
T COG0738 228 GLSS----LFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGR-FIGSALMSRIKPE 302 (422)
T ss_pred hHHH----HHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHH
Confidence 2333 3378899999999999999999999999999999779999999999999999999999 5656888899999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHH
Q 013411 307 RLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSP 386 (443)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 386 (443)
+.+.....+..+.++...+.++.+..+...++|++.+..+|..++...+..| ++...+ |..-.+...|+++-|.+.|+
T Consensus 303 k~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~-s~~l~maivGGAiiP~l~G~ 380 (422)
T COG0738 303 KYLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVG-SGLLVMAIVGGAIIPPLQGV 380 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-cccccc-ceeeeeheecchHHHHHHHH
Confidence 9988888887777777888888777777888999999999999999999999 444444 44445567899999999999
Q ss_pred HHHhhh
Q 013411 387 LTALFL 392 (443)
Q Consensus 387 l~~~~~ 392 (443)
+.|..+
T Consensus 381 i~d~~g 386 (422)
T COG0738 381 IADMFG 386 (422)
T ss_pred HHHhhh
Confidence 999964
No 86
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.96 E-value=2.8e-34 Score=275.19 Aligned_cols=405 Identities=16% Similarity=0.205 Sum_probs=267.5
Q ss_pred HHHHHHHHhhhcccccchhHHHHh---hcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHH
Q 013411 11 FITIFVHCFSTSMVAPAITDVTMS---AVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL 87 (443)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~ 87 (443)
.+..+...++.....+..+..... ..+....+.+.+..+.++..+...+|..+|+++.|.++||+|||+.++++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 344466666666665555444322 11112222333567889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcc---CCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh
Q 013411 88 SIIPLAILAYSR---SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI 164 (443)
Q Consensus 88 ~~i~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~ 164 (443)
..++.++.++++ + ++.+.++|+++|+ +.|...+....++.|..|+++|++..++.+....+|.+++..++...
T Consensus 86 ~~i~~~~~~~~~~~~~---~~~~~~~R~~~G~-~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNN---FWMLLIGRFLIGF-GIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred cccccccccccccccc---ccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 7 9999999999999 99999999999999999999999999999999999988887766533
Q ss_pred ----c---hhhHHHHHHHHHHHHHHHHHHhccCCCCc-------cccccccccchhhhhhhhhhhhhhh---hhcccCCc
Q 013411 165 ----S---TSAAFQAATAGSIISAVYMRIFLPESVRD-------EDLYTPILSSKAEISASCEESTKKL---QVFKRLPS 227 (443)
Q Consensus 165 ----~---w~~~f~~~~~~~~~~~~~~~~~~~e~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 227 (443)
+ ||..+.+.++++++..+ ...++||||++ +++++.+++.++++..+++.+++.+ +.++++..
T Consensus 162 ~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (451)
T PF00083_consen 162 SYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKAS 240 (451)
T ss_pred ccccccccccccccccccccccccc-cccccccccceeccccccccccccccccccccccccccccccccccccccccee
Confidence 4 99999998888876544 44889999974 2334444443222221111111111 11111123
Q ss_pred hhHHHhhhccChhhHHHHHHHHHHHhhh-hhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 013411 228 IDDMVHLLKSSPTFSQAAIVAFLSNLAD-AGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEA 306 (443)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (443)
+++.++..+..++....+...+...+.. .....+.+... +..+.+.. -.......+...++. +.+..+.||+|||
T Consensus 241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~-~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~GRr 316 (451)
T PF00083_consen 241 WRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIF-ENAGISNS--FLATLILGLVNFLGT-LLAIFLIDRFGRR 316 (451)
T ss_pred eeeccccccccccccccccccccccccccccccccccccc-cccccccc--ccccccccccccccc-ccccccccccccc
Confidence 4444322110112222222222222222 22333334343 33466665 122234445555555 4445899999999
Q ss_pred hHHHHHHHHHHHHHHHHH--h--hcch-----hHHHH-HHHHHHhhh-hhhhHHHHHHHhcCCCCcchhHHhHHhHHHHH
Q 013411 307 RLLSFGLLFGCVHMFLYS--V--AWSS-----WVPYA-AAVFSILSV-FSHPCLRTIVSKQVASNEQGKAQGCISGICSF 375 (443)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~--~--~~~~-----~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 375 (443)
++++.+.....++...+. . ..+. ..... ..+.....+ ...+..+.+..|.+|++.|+++.|+....+++
T Consensus 317 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i 396 (451)
T PF00083_consen 317 KLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRI 396 (451)
T ss_pred cccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 999998888877766664 1 1111 11111 222222333 44567778899999999999999999999999
Q ss_pred HHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Q 013411 376 ANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIRVAPPLPVSSQRVSN 437 (443)
Q Consensus 376 g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
++.++|.+...+.+..+. ...+.+.+.+.++..+..+.+. |||++++.+
T Consensus 397 ~~~i~~~~~~~~~~~~~~--------~~~~~i~~~~~~i~~i~~~~~l-----pET~g~~l~ 445 (451)
T PF00083_consen 397 GGFIIPFLFPYLFNNLGG--------WGVFLIFAGVCLIAIIFVYFFL-----PETKGKTLE 445 (451)
T ss_pred cccccccccccccccccc--------cccchhhHHHHHHHHhheeEEE-----eeCCCCCHH
Confidence 999999999888877431 2234555555566666666666 889888874
No 87
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.6e-30 Score=228.07 Aligned_cols=405 Identities=15% Similarity=0.125 Sum_probs=274.6
Q ss_pred HHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHH
Q 013411 12 ITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIP 91 (443)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~ 91 (443)
...+.+.++...+.++.|.+-.........+-+.++-..+.+..+..+|.++||++.|++.||+|||+++...+++..++
T Consensus 48 ~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~ 127 (538)
T KOG0252|consen 48 MGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIIC 127 (538)
T ss_pred hhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHH
Confidence 34455666666666666655554443333334566677899999999999999999999999999999999999999999
Q ss_pred HHHHHhccCC----chhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh---
Q 013411 92 LAILAYSRSR----NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--- 164 (443)
Q Consensus 92 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~--- 164 (443)
+++++++... ...+++.+.|++.|+ |.|+.+|.+.+..+|...+++||...+.+-+..+.|.+.|.+++-.+
T Consensus 128 t~~~~~s~~~~~~~~~m~~L~~~R~~LGi-GIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~ 206 (538)
T KOG0252|consen 128 SALSGLSVGTTSPLGVMMTLCFFRFLLGI-GIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAI 206 (538)
T ss_pred HHHhccCCCCCCCcchhhHHHHHHHHhhc-cccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHH
Confidence 9988876442 235789999999999 99999999999999999999999999998888888877776665432
Q ss_pred ----------------chhhHHHHHHHHHHHHHHHHHHhccCCCCcc-----ccccccccchhhhhhhhh-hhhhhhhhc
Q 013411 165 ----------------STSAAFQAATAGSIISAVYMRIFLPESVRDE-----DLYTPILSSKAEISASCE-ESTKKLQVF 222 (443)
Q Consensus 165 ----------------~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 222 (443)
-||..|.+.+++++. .+...+.+||+++.+ +.++..++.......+.+ ++..+....
T Consensus 207 fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~-~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~ 285 (538)
T KOG0252|consen 207 FEKIFNGPSTYPHLDGVWRIIFGLGAVPALL-VLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVP 285 (538)
T ss_pred HhccCCCCCCchHHHHHHHHHHHHHHHHHHH-HHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCC
Confidence 389998888887766 444667899998754 111110000000000000 000011111
Q ss_pred ccCCchhHHHhhhc--cChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHH--------HHHHHHHHHH-HH
Q 013411 223 KRLPSIDDMVHLLK--SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFAD--------LMVIAGIAGT-IS 291 (443)
Q Consensus 223 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~-~~ 291 (443)
..++..+...+.+. +-+.+.......|+.-.+++..+.+....++.. |+.+.+..+ ...+...++. ++
T Consensus 286 ~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~i-g~~~~~~~~~~~~~vA~~~~iia~~~~vPG 364 (538)
T KOG0252|consen 286 PPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAI-GVIPSANTYHELFKVAEGNLIIAVCSTVPG 364 (538)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhh-ccCCCcchHHHHHHHHHHHHHHHHHccCCc
Confidence 11112222222222 224555666677777788888777777777654 666554333 1111222222 23
Q ss_pred HHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhH------HHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhH
Q 013411 292 QLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWV------PYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKA 365 (443)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~ 365 (443)
. .++..++|++||+++.+.+++++.+..+.++...+... ....+...++..........+.+|.+|++.||+.
T Consensus 365 y-w~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~ 443 (538)
T KOG0252|consen 365 Y-WFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTC 443 (538)
T ss_pred e-eEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhh
Confidence 2 33345789999999999999999999988887665211 1112222334444556667778999999999999
Q ss_pred HhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 366 QGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 366 ~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
.|+....+..|++++...+.++.++. ..+.......+++.+.+.+++.+..+...
T Consensus 444 hGIsAA~GK~GAivg~~~F~~~t~~~---yp~~~g~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 444 HGISAASGKAGAIVGAFGFLYLTDHN---YPPNIGVRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred hhHHHHhccchHHHHHHHhhHhhhcc---CCccccchHHHHHHHHHHHHhHheeEEee
Confidence 99999999999999999999998852 22223345678888888888888777664
No 88
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.96 E-value=6.5e-26 Score=209.80 Aligned_cols=374 Identities=18% Similarity=0.209 Sum_probs=273.6
Q ss_pred hhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccc-cchhhHHHHHH
Q 013411 9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYG-RKALLTVPITL 87 (443)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~G-rr~~~~~~~~~ 87 (443)
.+....++.++..+...|.+|.+.++ .+.|..|+|.+.+...+...++++++|.++||++ +||.+.+..++
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~--------~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~ 77 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLES--------RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLL 77 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHH
Confidence 45666778888899999999999766 5788899999999999999999999999999986 57788788887
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhh-----hhh
Q 013411 88 SIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTI-----SAR 162 (443)
Q Consensus 88 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~-----l~~ 162 (443)
.++........++ ++.+++.-++..+ ......|...++..+... ++++-.|......++|.+++.. +.+
T Consensus 78 ~~~~~~~~~~~~~---f~~~~~~~~l~~~-~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~ 151 (400)
T PF03825_consen 78 SALALLLLAFSSS---FWWLFVIMLLFSF-FFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGG 151 (400)
T ss_pred HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHh
Confidence 7777777777778 8888888888887 777788888888888775 3444455555566666655532 222
Q ss_pred hhch---hhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccCh
Q 013411 163 FIST---SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSP 239 (443)
Q Consensus 163 ~~~w---~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (443)
..++ ...+++.+...++... ..+.+|+.|+++++ +++.++...++.++.+ |+|
T Consensus 152 ~~~~~~~~~~~~i~~~~~~ll~~-~~l~lp~~~~~~~~----------------------~~~~~~~~~~~~~~ll-k~~ 207 (400)
T PF03825_consen 152 YLGISGTSLIFYIAAILSLLLAG-FALFLPKTPPKRSA----------------------KESVKKLLGLDALKLL-KNP 207 (400)
T ss_pred hhccccccHHHHHHHHHHHHHHH-HHHhCCCCcccccc----------------------CCCcccccchHHHHHh-cCc
Confidence 2322 2455666655544333 33667877643321 1111122334444545 667
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHH
Q 013411 240 TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVH 319 (443)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 319 (443)
++...++..++.+......+.+.+.|+++.-|.+....+...++..+.+++.- ...+++.+|+|.++++.++.+..++-
T Consensus 208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f-~~~~~~~~r~g~~~ll~~a~~~~~vR 286 (400)
T PF03825_consen 208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFF-FFSGRFLKRFGIKWLLLLALVAYAVR 286 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 77778888888888888899999999998744777888888888889999988 45589999999999999999999999
Q ss_pred HHHHHhh-cchhHHHH-H----HHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHH-HHHHHHhHHhHHHHHHhhh
Q 013411 320 MFLYSVA-WSSWVPYA-A----AVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGIC-SFANLVSPLAFSPLTALFL 392 (443)
Q Consensus 320 ~~~~~~~-~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~-~~g~~~~~~~~g~l~~~~~ 392 (443)
..++... ++.+.... . .+-|+.++..+.....++.+.+|++.|++++++++... .+|..+|..++|+++|+++
T Consensus 287 ~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 287 WLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 9999887 44343332 2 23588899999999999999999999999999998764 6999999999999999975
Q ss_pred cCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 393 SDRAPFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
... .+.+ ...+.+.+++.++..+..+...
T Consensus 367 ~~~-~~~~-~~~~~v~a~~~~~~~~~f~~~f 395 (400)
T PF03825_consen 367 ARG-MFDW-SAVFLVFAVMALVILVLFVILF 395 (400)
T ss_pred chh-hhhH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 332 2211 2233444444444444444443
No 89
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.96 E-value=1.6e-25 Score=210.32 Aligned_cols=365 Identities=13% Similarity=0.080 Sum_probs=247.9
Q ss_pred hhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHH--HHHHhHHHHHhhhccc-ccccccccchhhHHH
Q 013411 8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQ--QAIIGLGTLVMMPLVG-NLSDKYGRKALLTVP 84 (443)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~~~~~~~~~~~G-~l~Dr~Grr~~~~~~ 84 (443)
..+....+...+..++..|.+|.+.++ .+.+..++|+. .+...+...+.+|+++ +..||+||||.+++.
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~--------~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~ 75 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLRE--------DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLP 75 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHH
Confidence 345556677777888999999999766 47888899997 4677888888999995 479999999987665
Q ss_pred HHH-hHHHHHHHH-hccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhh-
Q 013411 85 ITL-SIIPLAILA-YSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA- 161 (443)
Q Consensus 85 ~~~-~~i~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~- 161 (443)
..+ .+......+ +........+++..-++.++ ..+...+...++..|..++++++...+....+..+|.++|+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~ 154 (390)
T TIGR02718 76 MQCLVSACLASLALVGPDVAGAGWAVGLLACASL-ASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTL 154 (390)
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 533 222222222 21221113344455555666 66777788888999999988889988888888889999888644
Q ss_pred ---hhhchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccC
Q 013411 162 ---RFISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS 238 (443)
Q Consensus 162 ---~~~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (443)
..++||..|++.+.+.++..+.. ++++|+++++++ ++++ +.++..+.+ |+
T Consensus 155 ~l~~~~gw~~~f~~~a~l~~~~~~~~-~~~~~~~~~~~~----------------------~~~~---~~~~~~~~l-~~ 207 (390)
T TIGR02718 155 VLFGKFGQRPAFLLVACVPLASLVCV-LWLKDRAVASPE----------------------APLA---RRASLFRFF-RR 207 (390)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHH-HHcCCCCcCccc----------------------cchh---hHHHHHHHH-cC
Confidence 44599999999998887765555 344433221110 0000 111222333 55
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH
Q 013411 239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV 318 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 318 (443)
|.++......++..........+.+.|++| .|+++++.|......+....+...+.++++.||+++|+.+..+..+..+
T Consensus 208 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 208 PLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGS 286 (390)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 667767777777777777778888999988 4999999999988877655444335668999999999988877665533
Q ss_pred HHHHHHhhc------chhHHHHH-HHHHHhhhhhhhHHHHHHHhcCCC-CcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 319 HMFLYSVAW------SSWVPYAA-AVFSILSVFSHPCLRTIVSKQVAS-NEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 319 ~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
......... +.+..+.. .+.++..+...+..++...+..++ +.+++.++..+...++|..++|.+.|.++|.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~ 366 (390)
T TIGR02718 287 LALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR 366 (390)
T ss_pred HHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222111 11111222 222455667777788887777776 8899999999999999999999999999998
Q ss_pred hhcCCCCCccchhHHHHHHHHHHHHHH
Q 013411 391 FLSDRAPFNFPGFSIMCIGFVSMTAFI 417 (443)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (443)
.+ + ...+.+.+++.+++..
T Consensus 367 ~G-~-------~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 367 FG-Y-------AGGFLSGTVLAVLAIL 385 (390)
T ss_pred Hc-c-------HHHHHHHHHHHHHHHH
Confidence 53 1 2345555555555443
No 90
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.7e-26 Score=218.62 Aligned_cols=353 Identities=16% Similarity=0.122 Sum_probs=270.6
Q ss_pred CcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHH-HHHHHhhhhhc
Q 013411 40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAY-YVLRTLTAMVC 118 (443)
Q Consensus 40 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-~~~r~l~G~~~ 118 (443)
.++++.+..+.+|+.++......+..|+.+.+.||+|.|++.+.+.++.+++.++.+++++ +|++ +..-++.|+ |
T Consensus 73 ~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~---i~~l~lt~gvi~G~-G 148 (509)
T KOG2504|consen 73 MDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS---LWQLYLTFGVIGGL-G 148 (509)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhc-c
Confidence 4456777778999999999999999999999999999999999999999999999999999 7655 455688898 9
Q ss_pred cchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCc
Q 013411 119 EGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRD 194 (443)
Q Consensus 119 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~ 194 (443)
.+..+.....++..+++ |+|+.+.|+...+.++|.++-|.+..++ |||+.+++.+.+.+-..+.....-|.+++.
T Consensus 149 ~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~ 227 (509)
T KOG2504|consen 149 LGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPK 227 (509)
T ss_pred chhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 99999999999998886 8899999999999999998888877664 999999999988876666665555533332
Q ss_pred ccc--------------------ccccccchhhhhhh--hhhhhhhhhhcccCCchh-HH----HhhhccChhhHHHHHH
Q 013411 195 EDL--------------------YTPILSSKAEISAS--CEESTKKLQVFKRLPSID-DM----VHLLKSSPTFSQAAIV 247 (443)
Q Consensus 195 ~~~--------------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~ 247 (443)
.+. ++...+........ .+...++.+.+.+..+.+ .. ++++ +++.++...+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll-~~~~fl~~~~~ 306 (509)
T KOG2504|consen 228 KPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLL-KDPKFLLLALS 306 (509)
T ss_pred CchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHH-cCchHHHHHHH
Confidence 111 00000000000000 000000001101100111 11 2334 66888888888
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cchHHHHHHHHHHHHHHHHHh
Q 013411 248 AFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVG--EARLLSFGLLFGCVHMFLYSV 325 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 325 (443)
..+....+.....++|.|..+ .|++..+.+.+.++.++..++++++. |++.|+.. ++.+..++.+..+++......
T Consensus 307 ~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~-G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~ 384 (509)
T KOG2504|consen 307 NLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIIL-GLLADKPGIRALVLFLLTLLIAGLARLFLPF 384 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhh-hhhcCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 888888888889999999985 59999999999999999999999666 79999977 445666777777777777777
Q ss_pred hcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCcc
Q 013411 326 AWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNF 400 (443)
Q Consensus 326 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 400 (443)
..+.+.... ++++|++.+.........+.|.++.++-..+.|+...+..++..+||.+.|.+.|..++|...+..
T Consensus 385 ~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~ 460 (509)
T KOG2504|consen 385 ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYF 460 (509)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhh
Confidence 777766555 677788888888888889999999999999999999999999999999999999998776555433
No 91
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.96 E-value=2e-25 Score=208.76 Aligned_cols=391 Identities=13% Similarity=0.058 Sum_probs=279.2
Q ss_pred cchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccc----ccccchhh
Q 013411 6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD----KYGRKALL 81 (443)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~Grr~~~ 81 (443)
++..+....+-..+++....+.++.|.++ ++.+..+.+++..+..+..++.+|+.|+++| |+||||.+
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~~--------lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~ 76 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYVQE--------LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPF 76 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHH
Confidence 34445555666677788888888888644 6778889999999999999999999999999 59999998
Q ss_pred HHH-HHHhHHHHHHHHhccCCc--------------hhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcc--hhHHH
Q 013411 82 TVP-ITLSIIPLAILAYSRSRN--------------FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRR--ASVFG 144 (443)
Q Consensus 82 ~~~-~~~~~i~~~~~~~~~~~~--------------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r--~~~~~ 144 (443)
+.. .....++..+.+++++.. ..+..+++-.+..+ +.....+...++++|.+|+++| +.+.+
T Consensus 77 il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~-~~n~~~~p~rALiaDl~p~~~~~~~~a~~ 155 (477)
T TIGR01301 77 IAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDV-ANNMLQGPCRAFLADLTGGDARRTRIANA 155 (477)
T ss_pred HHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccCchhHHHHHHHH
Confidence 874 666667777777766510 00233444444555 6667778889999999998865 57999
Q ss_pred HHHHHhhhhhhhhhhhhhhh-------------------chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccch
Q 013411 145 IFSGIVSGAFVCGTISARFI-------------------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSK 205 (443)
Q Consensus 145 ~~~~~~~~g~~~g~~l~~~~-------------------~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 205 (443)
+.+...++|.++|+.+++.. +.|..|++.+++.++..++..+..||.|..++++...+
T Consensus 156 ~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~--- 232 (477)
T TIGR01301 156 YFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS--- 232 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh---
Confidence 99999999999999988753 33678888888888888888888999765322110000
Q ss_pred hhhhhhhhhhhhhhhhcccCCchhHHHhhhcc-ChhhHHHHHHHHHHHhhhhhhHHHHHHHHH-HHcCcChhh-------
Q 013411 206 AEISASCEESTKKLQVFKRLPSIDDMVHLLKS-SPTFSQAAIVAFLSNLADAGLQGSMMYYLK-AKFHFNKNQ------- 276 (443)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~------- 276 (443)
+ .++.++...+..+++.++.+++ ++.++.+++..++.+++++.+..+.+.|.. +.|+-++.+
T Consensus 233 -~--------~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~g 303 (477)
T TIGR01301 233 -E--------AAPPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDG 303 (477)
T ss_pred -h--------cccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHH
Confidence 0 0000001111234555544433 567889999999999999999888888876 455543221
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhhhhccc-chHHHHHHHHHHHHHHHHHhhcc---------------------hhH
Q 013411 277 ---FADLMVIAGIAGTISQLIMMPVLAPTVGE-ARLLSFGLLFGCVHMFLYSVAWS---------------------SWV 331 (443)
Q Consensus 277 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 331 (443)
-.+.....++...+.+++. +++.+|+|+ |+....+.++.++++....+..+ .+.
T Consensus 304 vr~G~~~l~~~s~~~~i~s~~l-~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (477)
T TIGR01301 304 VRAGAFGLMLNSVVLGITSIGM-EKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKAS 382 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHH
Confidence 1223344555555666444 789999985 67778888888888777764432 122
Q ss_pred H-HHHHHHHHhhhhhhhHHHHHHHhcCCC--CcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHH
Q 013411 332 P-YAAAVFSILSVFSHPCLRTIVSKQVAS--NEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCI 408 (443)
Q Consensus 332 ~-~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 408 (443)
. .....+|+..+..+...++++++..|+ +..|..+|+.|.+..+.+.+.....|.+.+..++. ....+.+.
T Consensus 383 ~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~------~~~~~~~~ 456 (477)
T TIGR01301 383 ALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGG------NLPAFVVG 456 (477)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCC------CeeHHHHH
Confidence 2 235667888899999999999999995 45699999999999999999999999977776533 23477888
Q ss_pred HHHHHHHHHHHHHhhc
Q 013411 409 GFVSMTAFIQSIMIRV 424 (443)
Q Consensus 409 ~~~~~~~~~~~~~~~~ 424 (443)
++..+++.+..++..+
T Consensus 457 gv~~~~aa~~~~~~~~ 472 (477)
T TIGR01301 457 AVAAFVSGLLALILLP 472 (477)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 8888888888877763
No 92
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.2e-25 Score=192.77 Aligned_cols=342 Identities=16% Similarity=0.201 Sum_probs=268.9
Q ss_pred hhhHHHHHHHHhhh----cccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHH
Q 013411 8 SHLFITIFVHCFST----SMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV 83 (443)
Q Consensus 8 ~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~ 83 (443)
+.+.....+..+.. ..+.|+++.+ ++|+++|.+..|++.++..+...+.+++..+++.|+|.++.+..
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~I--------r~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~ 82 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEI--------RQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFL 82 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHH--------HHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHH
Confidence 33444444444443 3445555555 66789999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhh----
Q 013411 84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTI---- 159 (443)
Q Consensus 84 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~---- 159 (443)
++++.+++.++-... + .+.++.+-.+.|. +.+......++++.|.+| |+-+..++++....++|..+++.
T Consensus 83 ~Llli~~G~~iR~~~-~---~~~L~~gt~l~G~-gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavp 156 (395)
T COG2807 83 ALLLIAAGILIRSLG-G---LPLLFLGTLLAGA-GIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVP 156 (395)
T ss_pred HHHHHHHHHHHHhcc-c---HHHHHHHHHHHHh-hHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhH
Confidence 999999999988877 5 6889999999998 999999999999999998 67899999999998887777654
Q ss_pred hhhhh-chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccC
Q 013411 160 SARFI-STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS 238 (443)
Q Consensus 160 l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (443)
+.... +||....+-+.++++.++ .++|...+++.. ..+.+..+... ++++
T Consensus 157 la~~~~gW~~aL~~WAl~allAl~---~WlPq~~r~~~~----------------------~~~~~~~~~~~----vw~~ 207 (395)
T COG2807 157 LAQHSGGWRGALGFWALLALLALL---IWLPQALREQAA----------------------SIATKLVSVRK----VWRS 207 (395)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHH---HHhhhccccccc----------------------ccccccccccc----cccC
Confidence 44454 799998888887777555 334442221110 00011111122 3378
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccchHHHHHHHHHH
Q 013411 239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV-GEARLLSFGLLFGC 317 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 317 (443)
|.-|.+.+.+.++++.++....|+|.++.|. |+|+.++|.+.+...+..++.. +..+.+.+|. ++|+.......++.
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~sa~~aG~llsl~~l~~~~~~-ll~P~la~R~~n~r~~~~~~~~~~l 285 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GLSAAEAGSLLSLMQLAQLPTA-LLIPLLARRSKNQRPLVVLALLLML 285 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CCCHHHhhhHHHHHHHHHHHHH-HHHHHHHHHhcccchHHHHHHHHHH
Confidence 8899999999999999999999999999997 9999999999999999999999 5558999875 45666667777777
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHhhhhhhhHHHHHHHhcCC-CCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcC
Q 013411 318 VHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVA-SNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSD 394 (443)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~ 394 (443)
++...+.+.+......-.+++|++.+..+|.....+.+..+ +++.++-.|+.+.++++-...||.+.|++.|..++.
T Consensus 286 ~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 286 VGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 77776666554333333578899999999998888777665 567788899999999999999999999999997654
No 93
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.96 E-value=1.4e-27 Score=234.10 Aligned_cols=294 Identities=13% Similarity=0.222 Sum_probs=211.5
Q ss_pred HHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHH
Q 013411 17 HCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILA 96 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~ 96 (443)
..+..+...+.++.+ +++++++..+.|++.+.+.++++++.++.|+++||+||||.+.++.++.+++.++++
T Consensus 45 ~~~~~g~~~~~l~~i--------ek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~a 116 (633)
T TIGR00805 45 GLLYNGLVNSSLTTI--------ERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLS 116 (633)
T ss_pred HHHHHHHHHhhchhh--------hhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHh
Confidence 333445555666655 556889999999999999999999999999999999999999999999999999988
Q ss_pred hcc----------------------------C--------------------CchhHHHHHHHHhhhhhccchhhhhhhh
Q 013411 97 YSR----------------------------S--------------------RNFFYAYYVLRTLTAMVCEGSIHCLSLA 128 (443)
Q Consensus 97 ~~~----------------------------~--------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 128 (443)
+.+ + ...+..++++|+++|+ +.+...+...+
T Consensus 117 lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~Gi-G~~~~~~~~~~ 195 (633)
T TIGR00805 117 LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGI-GATPIFPLGIS 195 (633)
T ss_pred ChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhc-cCCcchhcCch
Confidence 753 0 0125678899999999 99999999999
Q ss_pred hhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh--------------------------chhhHHHHHHHHHHHHHH
Q 013411 129 YVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--------------------------STSAAFQAATAGSIISAV 182 (443)
Q Consensus 129 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~--------------------------~w~~~f~~~~~~~~~~~~ 182 (443)
++.|++|+++|++.+++.+....+|.++|+++++.+ .||..|++.+++.++..+
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998887653 167778888887777655
Q ss_pred HHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHH
Q 013411 183 YMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSM 262 (443)
Q Consensus 183 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (443)
.. +++|++.++.+.++..+..+.+..+.. +.+...+......+..+..+.+.++|.++...+..++......++..++
T Consensus 276 ~l-~~~p~~lp~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~l 353 (633)
T TIGR00805 276 PF-FFFPKALPKEGKRVNVDVHETEKLEKS-EDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFL 353 (633)
T ss_pred HH-HhCccccCCcccccchhhhhhhccccc-ccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 566654332211000000000000000 0000000000001111222234478888888888888888999999999
Q ss_pred HHHHHHHcCcChhhHHHHHHHHHHH-HHHHHHHHHHHhhhhccc--chHHHHHHHHHHHHHHH
Q 013411 263 MYYLKAKFHFNKNQFADLMVIAGIA-GTISQLIMMPVLAPTVGE--ARLLSFGLLFGCVHMFL 322 (443)
Q Consensus 263 ~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~ 322 (443)
|.|+++.+|+++.+++.+.....+. .+++. +++|++.||++. |+.+..+.++..++.+.
T Consensus 354 P~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~-~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 354 PKYLENQYGISSAEANFLIGVVNLPAAGLGY-LIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHcCCcHHHHHHHhhhhhhhHHHHHH-hhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877764 45666 666899999884 56666666666555433
No 94
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.95 E-value=1.8e-26 Score=198.63 Aligned_cols=372 Identities=13% Similarity=0.062 Sum_probs=258.0
Q ss_pred CcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhcc
Q 013411 40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCE 119 (443)
Q Consensus 40 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 119 (443)
+...+.+.-+..++......|..+++..||..+|++|||+.+.+......+...+.+.++| +..+++.|.+.|+ |.
T Consensus 105 ~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spn---f~~L~~f~~l~~~-g~ 180 (528)
T KOG0253|consen 105 DEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPN---FASLCVFRALWGF-GV 180 (528)
T ss_pred HhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCC---eehhhHHHHHHhc-cC
Confidence 3346778888999999999999999999999999999999999999999999999999999 9999999999999 88
Q ss_pred chhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCcc
Q 013411 120 GSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF----ISTSAAFQAATAGSIISAVYMRIFLPESVRDE 195 (443)
Q Consensus 120 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~ 195 (443)
|+ .|...++-.|.-|..+|..-+-.. ..+.+|.+....++.. +||||.......+..+.+. ..+++||+|+..
T Consensus 181 gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~-f~~w~~ESpRf~ 257 (528)
T KOG0253|consen 181 GG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAAR-FLVWVYESPRFY 257 (528)
T ss_pred CC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHH-HHhhcccCcchh
Confidence 88 789999999999999998877766 8888998888777654 4999998888866555444 458899999732
Q ss_pred -------ccccccccchhhhhh---------------hhhhhh-hh---hhhcccCCchhHHHhhhccChhhHHHHHHHH
Q 013411 196 -------DLYTPILSSKAEISA---------------SCEEST-KK---LQVFKRLPSIDDMVHLLKSSPTFSQAAIVAF 249 (443)
Q Consensus 196 -------~~~~~~~~~~~~~~~---------------~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (443)
++.+.+++..+.+.. ++++.. .+ +..++......+++..-. +++........+
T Consensus 258 ~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~l-rkttlllw~iwf 336 (528)
T KOG0253|consen 258 LAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKL-RKTTLLLWRIWF 336 (528)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHH-HHHHHHHHHHHH
Confidence 122222221111100 000000 00 001111222333321111 122233444455
Q ss_pred HHHhhhhhhHHHHHHHHH-----------------HHcC---cChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHH
Q 013411 250 LSNLADAGLQGSMMYYLK-----------------AKFH---FNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLL 309 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~-----------------~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 309 (443)
...+.+++.........+ ...+ .+..++-- ..+.....+++. ++.+++.||+|||+.+
T Consensus 337 gnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd-llitslaefPGl-LIt~~iverlGRKkTM 414 (528)
T KOG0253|consen 337 GNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD-LLITSLAEFPGL-LITGVIVERLGRKKTM 414 (528)
T ss_pred hhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH-HHHHHHhhCCch-hHHHHHHHHhcchhHH
Confidence 555555554433332222 2111 11111111 235677888888 4557999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHH
Q 013411 310 SFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (443)
..++++++++.+++....+...... .+..-++....+.+.+.|..|.+|+..|+++.|..+.+.++|+++.|.+. ...
T Consensus 415 al~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~ 493 (528)
T KOG0253|consen 415 ALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRA 493 (528)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHh
Confidence 9999999998888777665443333 44455677778889999999999999999999999999999999999998 333
Q ss_pred HhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 013411 389 ALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIRVAPPLPVSSQRVS 436 (443)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (443)
+.. ...+..+.+.+++++.+....+. -|+++|+.
T Consensus 494 e~s---------~sl~i~vy~~~~ilagIavcffP-----iEtkGR~l 527 (528)
T KOG0253|consen 494 ELS---------TSLPIFVYGALFILAGIAVCFFP-----IETKGRSL 527 (528)
T ss_pred ccc---------eeehHHHHHHHHHHHHHHheeee-----eccCCCCC
Confidence 221 13356677777777777777766 56666653
No 95
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.95 E-value=1.6e-25 Score=213.81 Aligned_cols=365 Identities=13% Similarity=0.088 Sum_probs=246.2
Q ss_pred CCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccc-cccchhh
Q 013411 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK-YGRKALL 81 (443)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~~ 81 (443)
+++.++.++...+...++++...+.++.|+.+ +++.+..+.+++.+.+.....+..+++|+++|| +||||++
T Consensus 12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~-------~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~ 84 (489)
T PRK10207 12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVK-------QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI 84 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH
Confidence 35666777778888888888888888888766 356677778899999998888899999999999 9999999
Q ss_pred HHHHHHhHHHHHHHHhccCCchhHH-HHHHHHhhhhhccchhhhhhhhhhhcCCCCC--cchhHHHHHHHHhhhhhhhhh
Q 013411 82 TVPITLSIIPLAILAYSRSRNFFYA-YYVLRTLTAMVCEGSIHCLSLAYVADNVPPG--RRASVFGIFSGIVSGAFVCGT 158 (443)
Q Consensus 82 ~~~~~~~~i~~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~ 158 (443)
+.+.++++++.+.++++.+ ... ++++|.++|+ +.|...|...+++.|.+|++ +|+++++++..+.++|.++||
T Consensus 85 ~~g~~~~~~g~~~~~~~~~---~~~ll~~~~~l~~i-g~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~ 160 (489)
T PRK10207 85 VLGAIVLAIGYFMTGMSLL---KPDLIFIALGTIAV-GNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL 160 (489)
T ss_pred HHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH
Confidence 9999999999999999876 343 5589999999 99999999999999999877 457789999999999998888
Q ss_pred hhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCcc----cc--ccccccch------------hhhhhhhhhhh
Q 013411 159 ISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDE----DL--YTPILSSK------------AEISASCEEST 216 (443)
Q Consensus 159 ~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~----~~--~~~~~~~~------------~~~~~~~~~~~ 216 (443)
.+++++ |||+.|++.++ .++..++.+...++..++. ++ .|..+... ....+......
T Consensus 161 ~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
T PRK10207 161 SLAPVIADKFGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVAN 239 (489)
T ss_pred HHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 777654 89999998655 3333333334444322111 00 01000000 00000000000
Q ss_pred h---h---------hhhcccCCchhHHHhhhccChhhHHHH--HHHHHHHhhhhhhHHHHHHHHHHHcCcChh----hHH
Q 013411 217 K---K---------LQVFKRLPSIDDMVHLLKSSPTFSQAA--IVAFLSNLADAGLQGSMMYYLKAKFHFNKN----QFA 278 (443)
Q Consensus 217 ~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~ 278 (443)
. . ..++.+. + +.. |+|.+.... +...+....+......++.|.++..+.+.. ...
T Consensus 240 ~~~~~~~~i~~~~f~~~~~~~-~-----~~~-r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~ 312 (489)
T PRK10207 240 LVLIVLSIVVTIIFFREAFKL-D-----KTG-RNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPV 312 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-C-----HHH-HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHH
Confidence 0 0 0000000 0 111 333333222 223444455555556777888753332210 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccchH-------HHHHHHHHHHHHHHHH-----hh-----cchh-HHHHHHHHHH
Q 013411 279 DLMVIAGIAGTISQLIMMPVLAPTVGEARL-------LSFGLLFGCVHMFLYS-----VA-----WSSW-VPYAAAVFSI 340 (443)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~-----~~-----~~~~-~~~~~~~~~~ 340 (443)
.+.+...+..++..++. +++.||.++|+. +..+.++.++++..+. .. .+.| .....++.++
T Consensus 313 ~~~~~n~~~iii~~pl~-~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 391 (489)
T PRK10207 313 SFQALNPFWVVVASPIL-AGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL 391 (489)
T ss_pred HHHhHhHHHHHHHHHHH-HHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 44555666666677565 689999998863 6677777776654331 11 1223 3333667799
Q ss_pred hhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHH
Q 013411 341 LSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL 387 (443)
Q Consensus 341 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 387 (443)
+.....|...+++.+..|++.+|.++|+.+...++|+.++..+....
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988777644
No 96
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.95 E-value=7.7e-26 Score=220.27 Aligned_cols=333 Identities=16% Similarity=0.138 Sum_probs=233.2
Q ss_pred chhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccch
Q 013411 42 ECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGS 121 (443)
Q Consensus 42 ~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 121 (443)
....+.....+..+++.+|.++|++++|+++||+|||++++.++++..++.+..++++| ++.+++.|+++|+ +.+.
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~---~~~~~~~Rfl~G~-~~~~ 187 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN---YWMFLIFRFLSGF-FGSG 187 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hccc
Confidence 34456677899999999999999999999999999999999999999999999999999 9999999999999 8888
Q ss_pred hhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh--chhhHHHHHHHHHHHHHHHHHHhccCCCCcccc--
Q 013411 122 IHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--STSAAFQAATAGSIISAVYMRIFLPESVRDEDL-- 197 (443)
Q Consensus 122 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~-- 197 (443)
...+...++.|++++++|+.+..+ ......+..++++.++++ +||+.+++..++..+.+++ +++.||+|++...
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g 265 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKG 265 (521)
T ss_pred hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcC
Confidence 889999999999999999999999 666666666666666655 7999999999988876555 5667799985322
Q ss_pred -----ccccccchhhh---hhh-hhh-hh-hhhhhc----ccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHH
Q 013411 198 -----YTPILSSKAEI---SAS-CEE-ST-KKLQVF----KRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSM 262 (443)
Q Consensus 198 -----~~~~~~~~~~~---~~~-~~~-~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (443)
.+.+++..+.+ ... +.. .. ..++.. +++..+.+. + +.++++...+...+..+.......-+
T Consensus 266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~-~~~~l~~~~~~~~~~~~~~~~~y~gl 341 (521)
T KOG0255|consen 266 RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDL---F-RTPRLRYRTLYLLFIWFVFSLVYYGL 341 (521)
T ss_pred chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhh---h-cCHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 11111111100 000 000 00 000000 011223332 2 44434444443333333222222222
Q ss_pred HHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhH---HHH-HHHH
Q 013411 263 MYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWV---PYA-AAVF 338 (443)
Q Consensus 263 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~ 338 (443)
+.. ...+|.+... .....+....... ...+...|+.|||.....+..+..++++...+...... ... ..+.
T Consensus 342 ~~~-~~~lg~~~~~---~~~~~~~~~~p~~-~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (521)
T KOG0255|consen 342 SLN-VSGLGGNIYL---NFTLSGLVELPAY-FRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLG 416 (521)
T ss_pred hhh-hhhcCchHHH---HHHHHHHHHhhHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 222 2223444332 3334444666666 44468899999999999999999999988888764332 333 3344
Q ss_pred HHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHH
Q 013411 339 SILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTA 389 (443)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 389 (443)
.++.+..+...+.+..|.+|+..|+.+.+..+....++.+++|.+.-....
T Consensus 417 ~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 417 KFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666777779999999999999999999999999999999998765544
No 97
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.95 E-value=9.9e-25 Score=197.77 Aligned_cols=383 Identities=14% Similarity=0.107 Sum_probs=266.8
Q ss_pred CCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhH
Q 013411 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT 82 (443)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~ 82 (443)
||++.+.+....++.++..+...|..|..+++ +.|++..++|.+.++..+...+.+|+.|.++||.|.||-++
T Consensus 5 ~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~-------~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll 77 (412)
T PF01306_consen 5 KNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQ-------VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLL 77 (412)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHH
Confidence 45567778888888899999999999999865 26899999999999999999999999999999999766554
Q ss_pred HHHHHh--HHH-HHHHHhc----cCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhh
Q 013411 83 VPITLS--IIP-LAILAYS----RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFV 155 (443)
Q Consensus 83 ~~~~~~--~i~-~~~~~~~----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 155 (443)
...... ..+ .....+. .| .+...+++-...|+ ......|+..+++.+.. ++.+.-.|-.....++|.+
T Consensus 78 ~~i~~l~~l~~pff~~v~~pll~~n--~~lg~iig~i~l~~-~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~a 152 (412)
T PF01306_consen 78 WFIAILLLLFGPFFIYVFGPLLQSN--FWLGAIIGGIYLGL-VFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFA 152 (412)
T ss_dssp HHHHHHHHTCHHHHHHTHHHHHHTT---HHHHHHTTTTTTT-TTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-HHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHH
Confidence 433222 222 2222222 23 13344555555666 55666678888877766 4456667777788888888
Q ss_pred hhhhhhhhh---chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHH
Q 013411 156 CGTISARFI---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMV 232 (443)
Q Consensus 156 ~g~~l~~~~---~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (443)
++..++|.+ +.+..|++....+++..++..+.-|+.+++.+.. +.++.++++.+.++..
T Consensus 153 i~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 214 (412)
T PF01306_consen 153 IASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA------------------DALGAKKDKVSLKDVL 214 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS------------------TTSSS------HHHHH
T ss_pred HHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh------------------cccccCCCCCcHHHHH
Confidence 888888875 5567788877666665554434444433322210 0011122333566666
Q ss_pred hhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHc---CcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHH
Q 013411 233 HLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKF---HFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLL 309 (443)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 309 (443)
+.+ |.|++|...+........+..+...++.|....+ +.+....|++.+..-+.+++.- .+.+++.+|+|.|+.+
T Consensus 215 ~l~-k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m-~~~p~li~rig~k~~L 292 (412)
T PF01306_consen 215 SLF-KMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMM-FFSPWLINRIGAKNLL 292 (412)
T ss_dssp HHT-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHH
T ss_pred HHh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHH-HHHHHHHHhcChHhHH
Confidence 666 7788888777777766677777777888887643 3455668999999888898888 5559999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHH-hHHHHHHHHHhHHhHHHH
Q 013411 310 SFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCI-SGICSFANLVSPLAFSPL 387 (443)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~g~~~~~~~~g~l 387 (443)
+++..++.+-....++.++++.... -.+-++-.........-++.+.+|++..++.+.+. +...+++..+.+.+.|.+
T Consensus 293 llag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~l 372 (412)
T PF01306_consen 293 LLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYL 372 (412)
T ss_dssp HHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 9999999999999999998887666 45557888888899999999999999999999886 678889999999999999
Q ss_pred HHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhhcC
Q 013411 388 TALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIRVA 425 (443)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
+|+.|- ...+++.+.+.+...++.....++
T Consensus 373 yd~~G~--------~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 373 YDRIGF--------QHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHH--------HHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HhhcCc--------HHHHHHHHHHHHHHHHHheeeecC
Confidence 999742 235566666666666665555433
No 98
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.94 E-value=9.2e-25 Score=198.78 Aligned_cols=335 Identities=10% Similarity=0.061 Sum_probs=225.7
Q ss_pred chhhhHHH-HHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccc
Q 013411 42 ECSLAIYL-SGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEG 120 (443)
Q Consensus 42 ~~~~s~~~-~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 120 (443)
|++++..+ .|.+.++++.++++.+++.|+++||+|.|+++.++.+.+++..++.+++++ +..+.+.|++.|+ +.|
T Consensus 55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S---l~~L~i~R~llGv-aEA 130 (511)
T TIGR00806 55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS---VWHMQLMEVFYSV-TMA 130 (511)
T ss_pred HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHH
Confidence 67888898 999999999999999999999999999999999999999999999999999 9999999999999 999
Q ss_pred hhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh---chhhHHHHH--HHHHHHHHHHHHHhccCCCCcc
Q 013411 121 SIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI---STSAAFQAA--TAGSIISAVYMRIFLPESVRDE 195 (443)
Q Consensus 121 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~---~w~~~f~~~--~~~~~~~~~~~~~~~~e~~~~~ 195 (443)
... +...++..|+|++||+++.++...+..+|.++++++++.+ +||+-+.+. ...+....++..+++|..++..
T Consensus 131 ~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl 209 (511)
T TIGR00806 131 ARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSL 209 (511)
T ss_pred HHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhh
Confidence 998 9999999999999999999999999999999999888765 787654333 2223333444558888554420
Q ss_pred --ccccccc-cchhh--hhhhhhh-hhhhhhhcccCC----chhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHH
Q 013411 196 --DLYTPIL-SSKAE--ISASCEE-STKKLQVFKRLP----SIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYY 265 (443)
Q Consensus 196 --~~~~~~~-~~~~~--~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (443)
.+.+..+ ....+ ...+.+. +..+..+..... -+.++.+.. +++.+....+=..+....+..+.++....
T Consensus 210 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y-~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~L 288 (511)
T TIGR00806 210 FFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIY-RNPQLLLWSLWWVFNSAGYYLITYYVHTL 288 (511)
T ss_pred hhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHh-cCcchhhhhHHHHHHhhHHHHHHHHHHHH
Confidence 1000000 00000 0000000 000000000111 122333333 34444333333333333444444454444
Q ss_pred HHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--hHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhh
Q 013411 266 LKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEA--RLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILS 342 (443)
Q Consensus 266 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 342 (443)
.++..+-.+.-.|..-++..+.+.+..+.. |++-.++.+. ..+.+..++.+...+++...++.|..+. .+++...+
T Consensus 289 W~~v~~~~~~yNG~veA~~tllga~~a~~a-g~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y 367 (511)
T TIGR00806 289 WGTLDESLNKYNGAVDAASTLLGAITSFIA-GFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIY 367 (511)
T ss_pred HHHcCCCccccCCHHHHHHHHHHHHHHHHH-HhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHH
Confidence 444322122245677777777777777444 6765555432 2333444455555667777888888887 66778888
Q ss_pred hhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHh
Q 013411 343 VFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLA 383 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~ 383 (443)
....+.....+++....+.-|-.+|+++++.-+-..+-..+
T Consensus 368 ~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 368 QFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred HHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 88889999999999988888999999998877666655543
No 99
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.94 E-value=4.5e-24 Score=205.13 Aligned_cols=370 Identities=12% Similarity=0.056 Sum_probs=230.5
Q ss_pred CCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccc-cccchhh
Q 013411 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK-YGRKALL 81 (443)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~~ 81 (443)
+++.++.++...+...++.+...+.++.+..+ +++.+..+.+++.+.+........+++|+++|| +|||+++
T Consensus 19 ~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~-------~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~ 91 (500)
T PRK09584 19 QPKAFYLIFSIELWERFGYYGLQGIMAVYLVK-------QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI 91 (500)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 34567777888888888888888888888765 366777777888877776666667899999999 5999999
Q ss_pred HHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCc--chhHHHHHHHHhhhhhhhhhh
Q 013411 82 TVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGR--RASVFGIFSGIVSGAFVCGTI 159 (443)
Q Consensus 82 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~ 159 (443)
+.+.++.+++..+++++++. .+.+.++|+++|+ +.|...+...+++.|++|+++ |+.++++++.+.++|..+||.
T Consensus 92 ~~g~~~~~ig~~l~~~~~~~--~~~l~~~~~l~gi-g~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~ 168 (500)
T PRK09584 92 MLGAIVLAIGYALVAWSGHD--AGIVYMGMATIAV-GNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSML 168 (500)
T ss_pred HHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHH-hhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHH
Confidence 99999999999998887531 5667789999999 888888888999999998654 456788889999999999998
Q ss_pred hhhhh----chhhHHHHHHHHHHHHH---HHHHHhccCCCCcccc--ccccccch-----------hh-hhhhhhhhhhh
Q 013411 160 SARFI----STSAAFQAATAGSIISA---VYMRIFLPESVRDEDL--YTPILSSK-----------AE-ISASCEESTKK 218 (443)
Q Consensus 160 l~~~~----~w~~~f~~~~~~~~~~~---~~~~~~~~e~~~~~~~--~~~~~~~~-----------~~-~~~~~~~~~~~ 218 (443)
+++++ |||+.|.+.++...+.. +.....++|.+++.++ .|..+... .. .....+.....
T Consensus 169 i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (500)
T PRK09584 169 ATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMA 248 (500)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 88765 89999998875444432 2233344543221111 11000000 00 00000000000
Q ss_pred hhh---cccCCchhHHH--hhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHH--HcCcCh------hhHHHHHHHHH
Q 013411 219 LQV---FKRLPSIDDMV--HLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKA--KFHFNK------NQFADLMVIAG 285 (443)
Q Consensus 219 ~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~------~~~~~~~~~~~ 285 (443)
... .......++.. +...++|.+ ..+. .++....++......+.++.. ..+.+. ...+.+.+...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~ 326 (500)
T PRK09584 249 LGVVALGIVVIFGKEAFAMKGAARRKMI-VAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNP 326 (500)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHH-HHHH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhH
Confidence 000 00000000000 000011221 1111 222223333333444444332 111111 12456666777
Q ss_pred HHHHHHHHHHH---HHhhhhcccchHHHHHHHHHHHHHHHHHhhcc---------h-hHHHHHHHHHHhhhhhhhHHHHH
Q 013411 286 IAGTISQLIMM---PVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS---------S-WVPYAAAVFSILSVFSHPCLRTI 352 (443)
Q Consensus 286 ~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~ 352 (443)
+..++..++.. +++.||.+..+.+.+++++.++++..+....+ . |......+.+++.....|...++
T Consensus 327 i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~ 406 (500)
T PRK09584 327 FWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAM 406 (500)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 66666664431 23444555557788889999999887766543 2 44444777899999999999999
Q ss_pred HHhcCCCCcchhHHhHHhHHHHHHHHHhHHhH
Q 013411 353 VSKQVASNEQGKAQGCISGICSFANLVSPLAF 384 (443)
Q Consensus 353 ~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~ 384 (443)
+.+..|++.||+++|+......+|..++..+.
T Consensus 407 ~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 407 VAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999977655555444444443
No 100
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.94 E-value=2.5e-23 Score=196.19 Aligned_cols=350 Identities=15% Similarity=0.176 Sum_probs=258.7
Q ss_pred HHHHHHHHHHHhHHHHHhhhcccccccccccchhhHH-HHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhh
Q 013411 47 IYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV-PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCL 125 (443)
Q Consensus 47 ~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 125 (443)
.+..++..++..+..++..|+.|.++|+-|+||.++. ...+..+.+.++.+.+. +.++...+.-++.-+ +.+.....
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~-~~~~~~~~l~iia~v-~~~~~~vf 146 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSP-GQWWLALVLFIIANV-GYEASNVF 146 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHH-HHHHHHHH
Confidence 3556788999999999999999999999987766555 45555566666666522 224555555555555 66777788
Q ss_pred hhhhhhcCCCCCcc--------------------------hhHHHHHHHHhhhhhhhhhhhhhhh------------chh
Q 013411 126 SLAYVADNVPPGRR--------------------------ASVFGIFSGIVSGAFVCGTISARFI------------STS 167 (443)
Q Consensus 126 ~~~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~l~~~~------------~w~ 167 (443)
..+++.|..+++++ ++..+.-.....+|.++.-.+.-.+ +-|
T Consensus 147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r 226 (477)
T PF11700_consen 147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR 226 (477)
T ss_pred HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence 89999999999988 8888877777777776655444322 237
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHH
Q 013411 168 AAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIV 247 (443)
Q Consensus 168 ~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (443)
..+.+.++..++..+..++++||.|+.++..+ ........-...++.++..+|.|.....++.
T Consensus 227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~-----------------~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia 289 (477)
T PF11700_consen 227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPS-----------------GSSYLRFGFKRLWRTFKEIRKLRQLFLFLIA 289 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCc-----------------chhHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 78888888888878888889998876322000 0000000011223334445678888889999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--hHHHHHHHHHHHHHHHHHh
Q 013411 248 AFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEA--RLLSFGLLFGCVHMFLYSV 325 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~ 325 (443)
.++..-+...+......|.++.+|++..+...+.....+.++++.++. +++.||+|.| +.+..+.+...+..+.-.+
T Consensus 290 ~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~-g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~ 368 (477)
T PF11700_consen 290 YFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLF-GWLQDRFGPKTKRTLLISLILWIIIPLYGLF 368 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999555 7999999998 7777776666443333222
Q ss_pred --------hcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCC
Q 013411 326 --------AWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRA 396 (443)
Q Consensus 326 --------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 396 (443)
..+.+..++ .++.|+..+..++...++.+++.|+++.+..+|++...+...+.+||.+.|.+.+..++.+
T Consensus 369 G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r- 447 (477)
T PF11700_consen 369 GFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQR- 447 (477)
T ss_pred HhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-
Confidence 334555555 6677999999999999999999999999999999999999999999999999999976543
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 397 PFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
..+....++.++++++.....
T Consensus 448 ------~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 448 ------YGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred ------hHHHHHHHHHHHHHHHHhhcc
Confidence 344555566666666665443
No 101
>PRK09669 putative symporter YagG; Provisional
Probab=99.93 E-value=9.1e-23 Score=194.67 Aligned_cols=334 Identities=13% Similarity=0.067 Sum_probs=221.6
Q ss_pred ccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccc----cccchh-hHHHHHHhHHHHHHHHh
Q 013411 23 MVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK----YGRKAL-LTVPITLSIIPLAILAY 97 (443)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr----~Grr~~-~~~~~~~~~i~~~~~~~ 97 (443)
.....++.+..+ ++++++.+.|.+.++..+..++..|+.|+++|| +||||. ++.+.+..+++..+...
T Consensus 27 ~~~~~l~~~~t~-------~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~ 99 (444)
T PRK09669 27 TVMLFLAYFYTD-------VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFY 99 (444)
T ss_pred HHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 334445555544 478999999999999999999999999999998 788555 44576777777665555
Q ss_pred ccCC---chhHHHHHHHHhhhhhccchhhhhhhhhhhcCC-CCCcchhHHHHHHHHhhhhhhhhhhh----hhhh-----
Q 013411 98 SRSR---NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNV-PPGRRASVFGIFSGIVSGAFVCGTIS----ARFI----- 164 (443)
Q Consensus 98 ~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l----~~~~----- 164 (443)
.++. ..++.+++..++.+. +.........++.+|++ +++||++..++......+|..+++.+ ...+
T Consensus 100 ~p~~~~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~ 178 (444)
T PRK09669 100 TPDFGATGKIIYACVTYILLSL-VYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDE 178 (444)
T ss_pred CCCCCcchHHHHHHHHHHHHHH-HHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 5431 124556666666676 55566666778999998 45789998888888777776666543 2222
Q ss_pred --chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhH
Q 013411 165 --STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFS 242 (443)
Q Consensus 165 --~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
+|+..+.+.+++..+..+..++..+|.+++++ +++.+.++..+.+.++|.++
T Consensus 179 ~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~--------------------------~~~~~~~~~~~~~~~n~~~~ 232 (444)
T PRK09669 179 QKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEV--------------------------DNSSSVWKDLKLLLGNSQWR 232 (444)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCC--------------------------cCCCCHHHHHHHHhCCchHH
Confidence 46667777776666655555455555322111 01112233333344777777
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 013411 243 QAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFL 322 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 322 (443)
..+...++............++|.++..+ ++...+.+.....+..+++. ++.+++.||+|+|+....+..+..+....
T Consensus 233 ~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~gk~~~~~~~~~~~~~~~~~ 310 (444)
T PRK09669 233 IMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGA-LLSERLLGKFDRVRAFKWTIVAFVILSAL 310 (444)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 77777666655555444444555554433 23333444444556666666 45579999999999988877665543332
Q ss_pred HHhh--cchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCC-------CCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhh
Q 013411 323 YSVA--WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVA-------SNEQGKAQGCISGICSFANLVSPLAFSPLTALFL 392 (443)
Q Consensus 323 ~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 392 (443)
+... .+.+...+ .++.+++.+...+..+++++|..+ ++..|..+|..++...+|..+++.+.|.+.+..|
T Consensus 311 ~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 311 IFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2222 23333333 556688888888999999999875 3345778899999999999999999999999864
No 102
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.93 E-value=5.8e-23 Score=181.95 Aligned_cols=376 Identities=11% Similarity=0.077 Sum_probs=276.4
Q ss_pred hhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHH-HHHHhHHHHHHHHh
Q 013411 19 FSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV-PITLSIIPLAILAY 97 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~-~~~~~~i~~~~~~~ 97 (443)
+..-....++|.|..+....+..+..-+.+..|...++..+..++.+|+.|.++|+.|+||.... ...+..++..+..+
T Consensus 29 ~~~ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~ 108 (438)
T COG2270 29 FFAIVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWF 108 (438)
T ss_pred eeeeeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 34445566788888886555333444555678999999999999999999999999998766555 44455556666667
Q ss_pred ccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhh------h---------
Q 013411 98 SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA------R--------- 162 (443)
Q Consensus 98 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~------~--------- 162 (443)
.++...++..++.-.+..+ +.........+++.+.+++++-++..+.-.....+|..+.-+.. +
T Consensus 109 i~~~s~~~~~l~~~il~~i-~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l 187 (438)
T COG2270 109 IPPGSYLLLLLLFLILASI-GFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIIL 187 (438)
T ss_pred hCCCchHHHHHHHHHHHHH-hcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEe
Confidence 6663336777788888888 77777888999999999998888886665555555544432221 0
Q ss_pred -------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhh
Q 013411 163 -------FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLL 235 (443)
Q Consensus 163 -------~~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (443)
...-|..+.+.++-.++..+..++..|+.++..... .+.....-++.++.++..
T Consensus 188 ~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~-------------------~~~l~~g~k~L~~t~k~i 248 (438)
T COG2270 188 LGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPP-------------------PTALRNGFKELKSTFKEI 248 (438)
T ss_pred eccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccc-------------------hHHHHHHHHHHHHHHHHH
Confidence 012477888888888777777777777765422100 000000011222333445
Q ss_pred ccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH
Q 013411 236 KSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLF 315 (443)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 315 (443)
++++.+...++..+++.-...........|....+|++..+...+.....+.+++++ ++.|++.||+|.|+++..+.++
T Consensus 249 ~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~-ii~g~Ld~rfg~k~vl~~~lvi 327 (438)
T COG2270 249 RGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGA-IIAGFLDERFGSKPVLMIGLVI 327 (438)
T ss_pred hcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCceeehHHHHH
Confidence 577788999999999998888999999999998999999999999999999999999 5558999999999999999888
Q ss_pred HHHHHHHHHhhcchhHH-HHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcC
Q 013411 316 GCVHMFLYSVAWSSWVP-YAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSD 394 (443)
Q Consensus 316 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~ 394 (443)
..+.++...+....... ...+++|...+..+....++..+++|+++.++.+|+++..++..+.+||.+.+.+.+.+++.
T Consensus 328 ~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~ 407 (438)
T COG2270 328 LSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS 407 (438)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch
Confidence 87776665555543333 34677899999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHh
Q 013411 395 RAPFNFPGFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (443)
+ ..+....++..++....++.
T Consensus 408 r-------~g~~~i~vll~iGl~~L~~v 428 (438)
T COG2270 408 R-------AGVLSIIVLLLIGLLLLLRV 428 (438)
T ss_pred h-------hHHHHHHHHHHhhHhhEEee
Confidence 2 23344444455555544443
No 103
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.92 E-value=4.1e-25 Score=183.61 Aligned_cols=360 Identities=11% Similarity=0.048 Sum_probs=247.5
Q ss_pred CcchhhhHHHHHHHHHHHhHHHHHhhhcccccccc-cccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhc
Q 013411 40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK-YGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVC 118 (443)
Q Consensus 40 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 118 (443)
+.|.++...+..++.+.|+....+.+.+.|++.|| +|-|..-++-+....++.++++...-.+.+|+++++|++.|+ |
T Consensus 71 k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGI-G 149 (459)
T KOG4686|consen 71 KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGI-G 149 (459)
T ss_pred hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeecc-C
Confidence 44567777788999999999999999999999996 587776666666666777777654333339999999999999 6
Q ss_pred cchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhh----hhhhhhhchh---------hHHHHHHHHHHHHHHHHH
Q 013411 119 EGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCG----TISARFISTS---------AAFQAATAGSIISAVYMR 185 (443)
Q Consensus 119 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g----~~l~~~~~w~---------~~f~~~~~~~~~~~~~~~ 185 (443)
.-..-.+..+++..|+..||.+.++|+.....-+|..+- |.+...++-- .............-+...
T Consensus 150 gESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slica 229 (459)
T KOG4686|consen 150 GESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICA 229 (459)
T ss_pred chhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 555567888999999999999999999998888886653 3333322110 011111111111111111
Q ss_pred HhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHH
Q 013411 186 IFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYY 265 (443)
Q Consensus 186 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (443)
..+--+.+ ++++.+++ ++....+.++..+. ..-.|.+|.+.+.++++..+...+...-|.+
T Consensus 230 l~lg~~D~--rAerilh~--------------e~g~~Ge~pkLtdv---~~f~ppfw~~~iicv~yyva~fPFi~lg~~f 290 (459)
T KOG4686|consen 230 LSLGLSDD--RAERILHL--------------EEGFLGEEPKLTDV---NTFYPPFWVLVIICVLYYVAWFPFITLGPMF 290 (459)
T ss_pred HHhhhhhh--HHHHHHhh--------------hcCcccCCcccccc---cccCccHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 11111111 10000000 00000011111111 1135678888899999999888888899999
Q ss_pred HHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHH-HHHHHhhcchhHH-HHHHHHHHhhh
Q 013411 266 LKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVH-MFLYSVAWSSWVP-YAAAVFSILSV 343 (443)
Q Consensus 266 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~ 343 (443)
+++++|+|+..++.+.+.....+.+..++. |.++||.|++...+.+..+..+. -..+.+. .+.. ..+.++|....
T Consensus 291 F~~rfGlS~~~a~~i~s~vy~Isav~spvf-g~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 291 FQKRFGLSAVSAGNILSTVYGISAVLSPVF-GAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHhhCCChhhccchhhhhhhhhhhhhhhH-HHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHH
Confidence 999999999999999988888888888677 79999999987766655544433 2222221 2222 33667788888
Q ss_pred hhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 344 FSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 344 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
......+..+...+|+++.|+++|..+...++|-.+.|.+.|.+.|.-+++ -+....++..+.+.+......+...
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y----~~le~ffl~~~~~aL~svgil~~~N 443 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSY----DNLEAFFLIIGLMALTSVGILFYLN 443 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCch----hhHHHHHHHHHHHHHHHHHHHhhee
Confidence 877788999999999999999999999999999999999999999985543 3445667777777777777776665
Q ss_pred cCC
Q 013411 424 VAP 426 (443)
Q Consensus 424 ~~~ 426 (443)
+++
T Consensus 444 ~kq 446 (459)
T KOG4686|consen 444 KKQ 446 (459)
T ss_pred ccc
Confidence 444
No 104
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.92 E-value=2e-22 Score=193.44 Aligned_cols=350 Identities=13% Similarity=0.086 Sum_probs=240.6
Q ss_pred HHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccc----ccccch-hhHHHHH
Q 013411 12 ITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD----KYGRKA-LLTVPIT 86 (443)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~Grr~-~~~~~~~ 86 (443)
+..+...+..++..+.++.|..+ .+++++.++|.+..+..+..++..|+.|+++| |+|||| .++.+.+
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~-------v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i 85 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTD-------VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTL 85 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhH
Confidence 44445556666777777777655 36889999999999999999999999999999 669955 5556777
Q ss_pred HhHHHHHHHHhccCC---chhHHHHHHHHhhhhhccchhhhhhhhhhhcCC-CCCcchhHHHHHHHHhhhhhhhhhhhhh
Q 013411 87 LSIIPLAILAYSRSR---NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNV-PPGRRASVFGIFSGIVSGAFVCGTISAR 162 (443)
Q Consensus 87 ~~~i~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~~ 162 (443)
..+++..++-..++. ..+..+++..++.++ +.....+...++..|.+ +++||.+..++.....++|..+.+.+..
T Consensus 86 ~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~ 164 (473)
T PRK10429 86 ANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGM-TYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL 164 (473)
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHH-HHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776655443321 123455666667777 77777778889999999 5889999999877766666444433221
Q ss_pred ----hh-------chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHH
Q 013411 163 ----FI-------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDM 231 (443)
Q Consensus 163 ----~~-------~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (443)
.+ +|+....+.+++..+..+...+..||.++.++. +++++++.++++.
T Consensus 165 ~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~---------------------~~~~~~~~~~~~~ 223 (473)
T PRK10429 165 PFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQ---------------------VSAEGSHLTLKDI 223 (473)
T ss_pred HHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccc---------------------ccccccCCCHHHH
Confidence 12 345555555555555444554556664322110 0011223456777
Q ss_pred HhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHH
Q 013411 232 VHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSF 311 (443)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 311 (443)
++.++++|.++..+...++..........+.++|.+...+ ++...+.+.....+..+++.++. +++.||+|+|+.+..
T Consensus 224 ~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~-~~l~~r~gkk~~~~~ 301 (473)
T PRK10429 224 VALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILF-PRLVKSLSRRILWAG 301 (473)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCcHHHHHH
Confidence 7666688888888888777777666666666666655434 45556677777778888888554 799999999999888
Q ss_pred HHHHHHHHHHHHHh---h-c-chhHHHH-HHHHHHhhhhhhhHHHHHHHhcCC-------CCcchhHHhHHhHHHHHHHH
Q 013411 312 GLLFGCVHMFLYSV---A-W-SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVA-------SNEQGKAQGCISGICSFANL 378 (443)
Q Consensus 312 ~~~~~~~~~~~~~~---~-~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~g~~ 378 (443)
+..+..++.+.+.. . . +.+...+ ..+.+++.+...+...++++|..| .+..|..+|..++...++..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~a 381 (473)
T PRK10429 302 ASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSA 381 (473)
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHH
Confidence 87766655544432 1 2 2333333 455677788888888999999866 34456699999999999999
Q ss_pred HhHHhHHHHHHhhh
Q 013411 379 VSPLAFSPLTALFL 392 (443)
Q Consensus 379 ~~~~~~g~l~~~~~ 392 (443)
+++.+.|.+.+..|
T Consensus 382 l~~~i~g~~l~~~G 395 (473)
T PRK10429 382 FAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998764
No 105
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.92 E-value=1.7e-22 Score=191.61 Aligned_cols=332 Identities=14% Similarity=0.065 Sum_probs=234.1
Q ss_pred HHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhh
Q 013411 50 SGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAY 129 (443)
Q Consensus 50 ~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 129 (443)
..|+.+.+.++..+..++.|+++|.+|||..++.+.++..+|.+.++-++| ...++++..+.|+ +.|... .....
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~---~~~~iag~~l~Gv-gaG~~~-~~~~~ 154 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQN---MNTFIAGMVLYGV-GAGVQE-LAALA 154 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCc---HHHHHHHHHHHHH-hhHHHH-HHHHH
Confidence 478999999999999999999999999999999999999999999999999 9999999999999 866664 45666
Q ss_pred hhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCccc-c-----cc
Q 013411 130 VADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDED-L-----YT 199 (443)
Q Consensus 130 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~-~-----~~ 199 (443)
++|..|.|.|+...++...........+|.++..+ +|||.|++.++...+.++...++...+++++. . ++
T Consensus 155 isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~ 234 (599)
T PF06609_consen 155 ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKRE 234 (599)
T ss_pred HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHH
Confidence 89999999999888877776666666677777654 79999999998877766554444433222211 1 11
Q ss_pred ccccc-----------------------hh-hhhhhhhhhhh-------------hhhhcccCCchhHHHhhhccChhhH
Q 013411 200 PILSS-----------------------KA-EISASCEESTK-------------KLQVFKRLPSIDDMVHLLKSSPTFS 242 (443)
Q Consensus 200 ~~~~~-----------------------~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
.+++. .. ..+.+...... -+.....+++..+ .++++++|.+.
T Consensus 235 ~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P-~~Lf~~~r~~~ 313 (599)
T PF06609_consen 235 QLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFP-HRLFKDRRGFA 313 (599)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCC-HHHhccchHHH
Confidence 11110 00 01111100000 0000111122221 22344456677
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChh---hHHHHHHHHHHHHHHHHHHHHHHhhhhccc-chHHHHHHHHHHH
Q 013411 243 QAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKN---QFADLMVIAGIAGTISQLIMMPVLAPTVGE-ARLLSFGLLFGCV 318 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~ 318 (443)
..+++.++....++....+.|......++-++. ..++.....+.+...+..++ +.+..++++ |+.++.+..++.+
T Consensus 314 ~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~-g~l~~~ir~~Kw~li~~~~~~ta 392 (599)
T PF06609_consen 314 ALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVIL-GLLFSKIRHIKWQLIFGSVLMTA 392 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHH-HHHHHHccchhHHHHHHHHHHHH
Confidence 777788888888888888889888887776653 46777778888888888555 678887776 4555567666666
Q ss_pred HHHHHHhhc--ch-hHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHH
Q 013411 319 HMFLYSVAW--SS-WVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 319 ~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (443)
++.++.... +. ......++.+++.+..........+-..|+++.|++.|+....+.+|+.++..+...+.
T Consensus 393 ~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 393 FCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555554433 22 22233555677777777777777888899999999999999999999999998886654
No 106
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.92 E-value=8.1e-23 Score=194.09 Aligned_cols=324 Identities=15% Similarity=0.129 Sum_probs=252.9
Q ss_pred chhhhHHHHHHHHHHHhHHHHHhhhccccccc----ccccchhhH-HHHHHhHHHHHHHHhc-c-CC---chhHHHHHHH
Q 013411 42 ECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD----KYGRKALLT-VPITLSIIPLAILAYS-R-SR---NFFYAYYVLR 111 (443)
Q Consensus 42 ~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~Grr~~~~-~~~~~~~i~~~~~~~~-~-~~---~~~~~l~~~r 111 (443)
.+++++...|++..+..+..++..|+.|.++| |+||||..+ ++....+++..++... + +. .....+.+..
T Consensus 31 ~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~ 110 (428)
T PF13347_consen 31 VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFY 110 (428)
T ss_pred HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHH
Confidence 46889999999999999999999999999999 899877655 5778888887777766 4 11 1134457777
Q ss_pred HhhhhhccchhhhhhhhhhhcCCC-CCcchhHHHHHHHHhhhhhhhhhhhhh----hh-------chhhHHHHHHHHHHH
Q 013411 112 TLTAMVCEGSIHCLSLAYVADNVP-PGRRASVFGIFSGIVSGAFVCGTISAR----FI-------STSAAFQAATAGSII 179 (443)
Q Consensus 112 ~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~----~~-------~w~~~f~~~~~~~~~ 179 (443)
++..+ +.........++..|.++ ++||.+..+.-+....+|.++...+.. .+ +|++...+.+++.++
T Consensus 111 ~l~~~-~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v 189 (428)
T PF13347_consen 111 ILFDI-AYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLV 189 (428)
T ss_pred HHHHH-hhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHH
Confidence 77787 778888888999999998 469999999988888888754433322 22 478888888888888
Q ss_pred HHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhH
Q 013411 180 SAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQ 259 (443)
Q Consensus 180 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (443)
..++..+..||.+++.+ +++++.++++.++.++++|.++......++.........
T Consensus 190 ~~~i~~~~~ke~~~~~~------------------------~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~ 245 (428)
T PF13347_consen 190 FFLITFFFVKERSVEVT------------------------EQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMN 245 (428)
T ss_pred Hhhhhhheeeecccccc------------------------ccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhh
Confidence 77777788888222111 122233455555556688889989999988888888888
Q ss_pred HHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhc--chhHHHH-HH
Q 013411 260 GSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW--SSWVPYA-AA 336 (443)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~ 336 (443)
...++|.++..|.+ ...+.+.....+..+++.++. +++.||+|+|+.+..+..+.+++.+.+.+.. +.+..++ ..
T Consensus 246 ~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~-~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 323 (428)
T PF13347_consen 246 TFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLW-GRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFI 323 (428)
T ss_pred hHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHH-HHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 88899999887877 455777777888888888555 8999999999999999999999888877765 5554444 66
Q ss_pred HHHHhhhhhhhHHHHHHHhcCC-------CCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhh
Q 013411 337 VFSILSVFSHPCLRTIVSKQVA-------SNEQGKAQGCISGICSFANLVSPLAFSPLTALFL 392 (443)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 392 (443)
+.+++.+..+....++.+|..+ ++..|..+|+.+....++..+++.+.+.+.+..|
T Consensus 324 l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 324 LAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred HhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 6788889888999999998886 3457999999999999999999999999998864
No 107
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.92 E-value=2.3e-23 Score=198.61 Aligned_cols=388 Identities=10% Similarity=-0.020 Sum_probs=249.3
Q ss_pred HHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccc-----cchhhHHHHHH
Q 013411 13 TIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYG-----RKALLTVPITL 87 (443)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~G-----rr~~~~~~~~~ 87 (443)
..+...+. ++....++.++++ +++++..+++...+...+...+-.+ +|+++||++ ||+.++++.++
T Consensus 34 ~y~~qGl~-~l~~~~~~~~l~~-------~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 34 VLFVKGIA-GLMRLPLSPMLTD-------DLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHhhHH-HHhhhhhhHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 34444444 4444444555443 4789999999999999999998665 999999998 77777777766
Q ss_pred hH-HHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHH---HHHHHHhhhhhhhhhhhhhh
Q 013411 88 SI-IPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVF---GIFSGIVSGAFVCGTISARF 163 (443)
Q Consensus 88 ~~-i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~~~g~~~g~~l~~~ 163 (443)
.+ +.....+..++ ......+..++.++ +.+...++..++..|..+ |++.... +.......+|.++|+.+++.
T Consensus 105 ~~~~~~~~l~~~~~--~~~~~~~~~~l~~~-~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~ 180 (468)
T TIGR00788 105 GSAILYGLLPGKVS--SAKVAAAFIFLAAL-AKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGP 180 (468)
T ss_pred HHHHHHHhcccccc--hHHHHHHHHHHHHH-HHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHH
Confidence 63 43333333334 13444458899998 888888999999999998 5554432 23333344677777777665
Q ss_pred ----hchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccCh
Q 013411 164 ----ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSP 239 (443)
Q Consensus 164 ----~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (443)
.+|+..|++.+.+.++. .....++||+++....+. .++ +... .. .......+..++..++.++.+ ++|
T Consensus 181 l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~-~~~-~~~~--~~--~~~~~~~~~~~~~~~~l~~~l-~~~ 252 (468)
T TIGR00788 181 LLDKTLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRI-GTY-LEMN--MA--LLTLGVLANVKVQILGLRGAI-QLL 252 (468)
T ss_pred HHHhcCcchHHHHHHHHHHHH-HHHHHhcccccccccccc-ccc-chhh--hh--hhhhhHHHHHHHHHHHHHHHH-hcH
Confidence 48999999998887776 444577888642111000 000 0000 00 000000000111234444444 456
Q ss_pred hhHHHHHHHHH-HHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH
Q 013411 240 TFSQAAIVAFL-SNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV 318 (443)
Q Consensus 240 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 318 (443)
.++..++..++ +.......... -.+.++..|+++.+.|......+++.+++.... +++.+|++.|+++..+.++..+
T Consensus 253 ~i~~~l~fifl~~~~~~~~~~~~-f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~-~~~~~~~~~r~~l~~~~~l~~~ 330 (468)
T TIGR00788 253 EIAKPLIFIFLSYANLPGASGSV-FCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGY-DRFLKTFPYRLLFGVTTLLYTL 330 (468)
T ss_pred HHHHHHHHHHHHHhhcCCCCcee-EEEEcccCCCCcchhhhHHHHHHHHHHHHHHHH-HHHHhhCCHHHHHHHHHHHHHH
Confidence 66665555544 22222221111 113334579999999999999999999999555 6888999999999999888887
Q ss_pred HHHHHHhh----------cchhHHH-HHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHH
Q 013411 319 HMFLYSVA----------WSSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL 387 (443)
Q Consensus 319 ~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 387 (443)
+....... ++.+... ...+.+++.+........++++..|++.+|+.+++.+.+.++|..+++.++|.+
T Consensus 331 ~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l 410 (468)
T TIGR00788 331 SSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL 410 (468)
T ss_pred HHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76443211 1222222 245557777888888899999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 388 TALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
.++.+.....+.......++..+..++...+.....
T Consensus 411 ~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP 446 (468)
T TIGR00788 411 METIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLP 446 (468)
T ss_pred HHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 998764444333333444555555555555555444
No 108
>PRK09848 glucuronide transporter; Provisional
Probab=99.92 E-value=7.3e-23 Score=195.67 Aligned_cols=345 Identities=12% Similarity=0.043 Sum_probs=228.1
Q ss_pred HHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccccc----ccchhh-HHHHH
Q 013411 12 ITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY----GRKALL-TVPIT 86 (443)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~----Grr~~~-~~~~~ 86 (443)
+..+...+..++..+.++.|..+ ++++++.+.|.+.+...+..++..++.|+++||. ||||.+ ..+.+
T Consensus 15 ~g~~~~~~~~~~~~~~l~~y~~~-------~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~ 87 (448)
T PRK09848 15 LGDVANNFAFAMGALFLLSYYTD-------VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA 87 (448)
T ss_pred cchHHhHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence 34445566666677777777655 3678899999999999999999999999999996 777755 45555
Q ss_pred HhHHHHHHHHhcc-C---CchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCC-CcchhHHHHHHHHh-----hhhhhh
Q 013411 87 LSIIPLAILAYSR-S---RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP-GRRASVFGIFSGIV-----SGAFVC 156 (443)
Q Consensus 87 ~~~i~~~~~~~~~-~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~-----~~g~~~ 156 (443)
...+...+....+ . ....+..+....+.++ +.+...+...++..|..++ +||.+..++-..+. .++..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ 166 (448)
T PRK09848 88 PLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGL-CYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLI 166 (448)
T ss_pred HHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHH-HHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544444432112 1 0112334555667777 7777777777777777654 57888766665433 345566
Q ss_pred hhhhhhhhch----hh--HHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhH
Q 013411 157 GTISARFIST----SA--AFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDD 230 (443)
Q Consensus 157 g~~l~~~~~w----~~--~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (443)
+|.++...+. .+ ...+.+++..+..+......||++++++ ++.+.++
T Consensus 167 ~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~---------------------------~~~~~~~ 219 (448)
T PRK09848 167 GPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIV---------------------------AQPSLKI 219 (448)
T ss_pred HHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCc---------------------------cCCCHHH
Confidence 6766654321 11 1122222222222233333454422111 0112333
Q ss_pred HHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHH
Q 013411 231 MVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLS 310 (443)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 310 (443)
..+.+.++|.+....+..++............|+|.++.+|.++...+.......++.+++.++ .+++.||+++|+.+.
T Consensus 220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~r~g~~~~~~ 298 (448)
T PRK09848 220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPL-VPGMVARIGKKNTFL 298 (448)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcHHHHH
Confidence 3333457888888888888777777777777888888888877765554444445566667744 479999999999999
Q ss_pred HHHHHHHHHHHHHHhhc--chhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCC-------cchhHHhHHhHHHHHHHHHh
Q 013411 311 FGLLFGCVHMFLYSVAW--SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASN-------EQGKAQGCISGICSFANLVS 380 (443)
Q Consensus 311 ~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~g~~~g~~~~~~~~g~~~~ 380 (443)
.+..+..++.+.+.+.+ +.+.... ..+.+++.+...+...++..|..|.+ ++|...|+.+....+|..++
T Consensus 299 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig 378 (448)
T PRK09848 299 IGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIG 378 (448)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHH
Confidence 99888887776665543 2333333 45567888888888899998888754 46999999999999999999
Q ss_pred HHhHHHHHHhhh
Q 013411 381 PLAFSPLTALFL 392 (443)
Q Consensus 381 ~~~~g~l~~~~~ 392 (443)
+.+.|.+.+..|
T Consensus 379 ~~i~g~~l~~~G 390 (448)
T PRK09848 379 GSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHcC
Confidence 999999988754
No 109
>PTZ00207 hypothetical protein; Provisional
Probab=99.91 E-value=6.7e-22 Score=188.92 Aligned_cols=371 Identities=12% Similarity=0.056 Sum_probs=247.3
Q ss_pred CcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhc------cCCchhHHHHHHHHh
Q 013411 40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYS------RSRNFFYAYYVLRTL 113 (443)
Q Consensus 40 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------~~~~~~~~l~~~r~l 113 (443)
+++++++..+.+++.++.. .....+++.|+++||+|||+++.++.+++.++.++++++ ++ ++.+++.|++
T Consensus 54 ~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s---~~~l~l~r~l 129 (591)
T PTZ00207 54 QARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS---VVRLSVYNGL 129 (591)
T ss_pred HHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCc---HHHHHHHHHH
Confidence 4457888888898887743 445677789999999999999999999999999999987 45 8999999999
Q ss_pred hhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhh-hhhhhhhh--chhhHHHHHHHHHHHHHHHHHHhccC
Q 013411 114 TAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVC-GTISARFI--STSAAFQAATAGSIISAVYMRIFLPE 190 (443)
Q Consensus 114 ~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~~~~e 190 (443)
.|+ +.+...+.....+.+|+| ++||++.|+.....++|.++ +++...++ +|+..|++.+++.++..++...++++
T Consensus 130 ~G~-G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 130 MTL-GCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRL 207 (591)
T ss_pred HHH-HHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence 999 888888888899999997 78999999999999999975 55555555 78888888888888877777677666
Q ss_pred CCCcc---------cccccc---------cc---------------------------------------------c---
Q 013411 191 SVRDE---------DLYTPI---------LS---------------------------------------------S--- 204 (443)
Q Consensus 191 ~~~~~---------~~~~~~---------~~---------------------------------------------~--- 204 (443)
.|... ++++.. ++ .
T Consensus 208 p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~ll 287 (591)
T PTZ00207 208 PPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLT 287 (591)
T ss_pred CcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 54211 111110 00 0
Q ss_pred --hh-----------h--h-hhhhhhhh--h-----hhhhc-------c-cCCch-hHHHhhhccChhhHHHHHHHHHHH
Q 013411 205 --KA-----------E--I-SASCEEST--K-----KLQVF-------K-RLPSI-DDMVHLLKSSPTFSQAAIVAFLSN 252 (443)
Q Consensus 205 --~~-----------~--~-~~~~~~~~--~-----~~~~~-------~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 252 (443)
.+ . + +++.+..+ + .+++. + ..+.. ...++.+ ++..+|.+++..++..
T Consensus 288 l~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l-~~~d~Wll~~~~~cg~ 366 (591)
T PTZ00207 288 VIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGL-KTARLWCLLWSIFCCV 366 (591)
T ss_pred HHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHH-hchhHHHHHHHHHHhh
Confidence 00 0 0 00000000 0 00000 0 00000 0333333 4677888888888877
Q ss_pred hhhhhhHHHHHHHHHHHcCcChhh--HHHHHHHHHHHHHHHHHHHHHHhh----hh-----cccchHHHHHHHHHHHHHH
Q 013411 253 LADAGLQGSMMYYLKAKFHFNKNQ--FADLMVIAGIAGTISQLIMMPVLA----PT-----VGEARLLSFGLLFGCVHMF 321 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~----~~-----~~~~~~~~~~~~~~~~~~~ 321 (443)
.........+.+..+..-|.+.+. ...+.++.++.+.+|+ +.+|.+. +| +.|--.+.+..+ +.++.+
T Consensus 367 g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GR-l~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~l 444 (591)
T PTZ00207 367 GAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGR-LCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITML 444 (591)
T ss_pred CchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhH-HHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHH
Confidence 776666666666666543663322 2336788999999999 4446665 22 111122333344 555555
Q ss_pred HHHhhcc-hhHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHh-HHhHHHHHHhhhcCCCC--
Q 013411 322 LYSVAWS-SWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVS-PLAFSPLTALFLSDRAP-- 397 (443)
Q Consensus 322 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~-~~~~g~l~~~~~~~~~~-- 397 (443)
++....+ ....+..++.|+++|..++.....++|++. ++-|+-+-+.....-+|..+- -.+.|.++|.-......
T Consensus 445 ll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~ 523 (591)
T PTZ00207 445 TLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDV 523 (591)
T ss_pred HHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCe
Confidence 5555544 344445788899999999999999999999 888888888877777777766 66888899875322111
Q ss_pred ---CccchhHHHHHHHHHHHHHHHHH
Q 013411 398 ---FNFPGFSIMCIGFVSMTAFIQSI 420 (443)
Q Consensus 398 ---~~~~~~~~~~~~~~~~~~~~~~~ 420 (443)
......++++.+++++.+.+...
T Consensus 524 C~G~~C~~~~~~v~~~~~~~g~~~s~ 549 (591)
T PTZ00207 524 CTERVCVVMPLAFLLGLSFLAFITST 549 (591)
T ss_pred eCCceeeHhHHHHHHHHHHHHHHHHh
Confidence 11223467777777776666543
No 110
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.91 E-value=1.3e-21 Score=182.42 Aligned_cols=371 Identities=32% Similarity=0.543 Sum_probs=271.7
Q ss_pred hhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchh-hhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHH
Q 013411 8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECS-LAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT 86 (443)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~ 86 (443)
..+....++..++.++..+..........+....+.+ .+....+.......+...+.++..|.++||+|||..+....+
T Consensus 21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~ 100 (463)
T KOG2816|consen 21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF 100 (463)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence 3456667777888888777666555543332222211 122222333334467888999999999999999999999998
Q ss_pred HhHHHHHHHHhccCCchhHHHHHHHHhhhh-hccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh-
Q 013411 87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAM-VCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI- 164 (443)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~- 164 (443)
...+......+.. +|.++ +.|+ ++.+.......++++|....++|...+++.+.....+..++|.++++.
T Consensus 101 ~~~l~~~~~~~~~----~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~ 172 (463)
T KOG2816|consen 101 GTILPALCLLFQG----YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV 172 (463)
T ss_pred HHHHhHHHHHHHH----HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888877776665 33333 3333 133456677889999999999999999999999999999999988875
Q ss_pred ---chhhHHHHHHHHHHHHHHHHHHhccCCCCcccccc-ccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChh
Q 013411 165 ---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYT-PILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPT 240 (443)
Q Consensus 165 ---~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (443)
+.-..|++..+..++..+...+++||+..++++.+ ..++...+ +.........++...+ .+++|.
T Consensus 173 ~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~~~~r~ 241 (463)
T KOG2816|consen 173 KFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPG----------SLDSSHVADAFQSLTK-VGPDRL 241 (463)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCC----------cccchhhhhhhhhhcc-cCCCcc
Confidence 56678899999999988999999999876655321 00000000 0000011111111111 223444
Q ss_pred hHHHHHHHHHHHhhhhh-hHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHH
Q 013411 241 FSQAAIVAFLSNLADAG-LQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVH 319 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 319 (443)
...+....+.......+ .....+.|+...+++++.+.+.+.+..+....+++.+..+.+...++.++.+..|.....+.
T Consensus 242 ~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~ 321 (463)
T KOG2816|consen 242 LLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQ 321 (463)
T ss_pred chHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHH
Confidence 44444444443333322 22144678888999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHhhcchhHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCC
Q 013411 320 MFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAP 397 (443)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 397 (443)
...+++..+.|..+.............|...+..+...+++++|+++++...+..+...++|.+.+.++..+.....+
T Consensus 322 ~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~~~~~~ 399 (463)
T KOG2816|consen 322 LLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTLDDLPG 399 (463)
T ss_pred HHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHhccc
Confidence 999999999999999888888889999999999999999999999999999999999999999999998876544433
No 111
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.90 E-value=6.5e-21 Score=171.81 Aligned_cols=259 Identities=10% Similarity=0.121 Sum_probs=197.5
Q ss_pred hHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh-------------------
Q 013411 104 FYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI------------------- 164 (443)
Q Consensus 104 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~------------------- 164 (443)
++.++++-++.|. |.+...+..+.++++..|+|++.+.+++.+..+++|..+||.+++.+
T Consensus 10 ~~~~l~~~f~~g~-G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (310)
T TIGR01272 10 YVLFLGALFVLAS-GLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA 88 (310)
T ss_pred HHHHHHHHHHHHh-hHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence 9999999999999 99999999999999999999999999999999999999999998742
Q ss_pred -chhhHHHHHHHHHHHHHHH-HHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhH
Q 013411 165 -STSAAFQAATAGSIISAVY-MRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFS 242 (443)
Q Consensus 165 -~w~~~f~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
.|+++|++.+.+..+..+. ....+||.++++++ +..+ ++..+.++ ..++|.++
T Consensus 89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~--------------------~~~~-~~~~~~~~----~~~~~~~~ 143 (310)
T TIGR01272 89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVA--------------------RVSS-GDTTQKTS----AFQFTHLV 143 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCccccc--------------------cccc-ccccchhh----HHhhHHHH
Confidence 4788888666655444432 22233443221110 0000 00001111 12456677
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHH--cCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 013411 243 QAAIVAFLSNLADAGLQGSMMYYLKAK--FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM 320 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 320 (443)
...+..+++.....+...|.+.|+.+. +|+++.+.+...+....+.++++ ++++++.||+++|+.+..+..+..++.
T Consensus 144 l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr-~~~~~l~~r~g~~~~l~~~~~l~~~~~ 222 (310)
T TIGR01272 144 LGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGR-FIGSAVMPMISQGRYLAFNAFLAVLLS 222 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 777777777778889999999999864 69999999999999999999999 555899999999998888887777776
Q ss_pred HHHHhhcchhHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 321 FLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
++....++....+...+++++.+..+|...+...+..|+ +.+++.++. ....+|+.+.|.+.|.+.|..
T Consensus 223 ~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~ 291 (310)
T TIGR01272 223 IGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCL 291 (310)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhc
Confidence 555554444344445667889999999999999999884 456777775 567899999999999999975
No 112
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.89 E-value=4.6e-20 Score=173.62 Aligned_cols=366 Identities=11% Similarity=0.061 Sum_probs=226.6
Q ss_pred CCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccccc-ccchhhH
Q 013411 4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-GRKALLT 82 (443)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-Grr~~~~ 82 (443)
++.++.++.......++.+.....+|.|+.+ +++.+..+.+.+.+.+.....++++++|+++||+ ||||+++
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~-------~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~il 80 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTN-------QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVM 80 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHH
Confidence 4455666777777788888888888888766 3677888899999999999999999999999999 9999999
Q ss_pred HHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCC--cchhHHHHHHHHhhhhhhhhhhh
Q 013411 83 VPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPG--RRASVFGIFSGIVSGAFVCGTIS 160 (443)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~l 160 (443)
++.++.+++.++++...+. ...+.+...+.++ +.|...+...++++|.+|++ +|.+++++.....++|..++|.+
T Consensus 81 iG~il~~lg~lll~~~~~~--~~~~~l~l~li~i-G~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l 157 (493)
T PRK15462 81 LGALLMAIGHVVLGASEIH--PSFLYLSLAIIVC-GYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA 157 (493)
T ss_pred HHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH-hcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHH
Confidence 9999999998777654321 2223333334444 55666677788999999876 69999999999999999999999
Q ss_pred hhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCccc--cccccccchhhh----------------hhhhhhhhhh
Q 013411 161 ARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDED--LYTPILSSKAEI----------------SASCEESTKK 218 (443)
Q Consensus 161 ~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~~~----------------~~~~~~~~~~ 218 (443)
.+++ ||++.|.+.++..++..+ .++..++...+.. +.+..++.+... .......+..
T Consensus 158 ~g~L~~~~Gw~~~F~iaaigm~l~li-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (493)
T PRK15462 158 CGYAQEEYSWAMGFGLAAVGMIAGLV-IFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWS 236 (493)
T ss_pred HHHHHhhhChHHHHHHHHHHHHHHHH-HHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8875 899999887654433333 2232221111100 000000000000 0000000000
Q ss_pred h---------------hhcccCCchhHHHhhhccCh--hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHc-----CcChhh
Q 013411 219 L---------------QVFKRLPSIDDMVHLLKSSP--TFSQAAIVAFLSNLADAGLQGSMMYYLKAKF-----HFNKNQ 276 (443)
Q Consensus 219 ~---------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~ 276 (443)
. ....++.+-.| |+| .+..+.+...+++..+....+.+..|.++.. |++- .
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~e------r~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~i-p 309 (493)
T PRK15462 237 VYALIVATIIGLGVLAKIYRKAENQKQ------RKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTV-P 309 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceee-C
Confidence 0 00000000001 111 1222333334444444445555666766543 3322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccc--c-----hHHHHHHHHHHHHHHHHHhhc---------c-hhHHHHHHHHH
Q 013411 277 FADLMVIAGIAGTISQLIMMPVLAPTVGE--A-----RLLSFGLLFGCVHMFLYSVAW---------S-SWVPYAAAVFS 339 (443)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~ 339 (443)
.+++.+++.+..++.+++++ ++=.|..+ | .-...+.++.+++++.+.... + .|......+..
T Consensus 310 ~~~~qslNp~~ii~l~P~~a-~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLA-WVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG 388 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHH-HHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 45677888888887776664 44344421 2 125677777777776664321 2 23333466678
Q ss_pred HhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 340 ILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
++.-...|...++++++.|++.+|..+|+..... .++++.+.|.+.+..
T Consensus 389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~---~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLS---GAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999984432 245555555555543
No 113
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.88 E-value=5e-20 Score=168.84 Aligned_cols=348 Identities=14% Similarity=0.070 Sum_probs=263.5
Q ss_pred HHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccc----ccccchhh-HHHHHHh
Q 013411 14 IFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD----KYGRKALL-TVPITLS 88 (443)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~Grr~~~-~~~~~~~ 88 (443)
.+...+........+..+..| .+++++...|.+..+.-+--++..|+.|.++| |+||+|.. +.+.+..
T Consensus 21 d~~~~~~~~~~~~yLl~fYTd-------v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~ 93 (467)
T COG2211 21 DFASNFAFGIVVLYLLFFYTD-------VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPF 93 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHhc-------ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHH
Confidence 344444455555555555544 47899999999999999999999999999999 47886654 4576888
Q ss_pred HHHHHHHHhccC---CchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCC-CCcchhHHHHHHHHhhhhhhhhhh----h
Q 013411 89 IIPLAILAYSRS---RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVP-PGRRASVFGIFSGIVSGAFVCGTI----S 160 (443)
Q Consensus 89 ~i~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~----l 160 (443)
++...++-.+++ .......++...+.++ +.......-.++.+|.++ ++||.+..++-+...++|..+... +
T Consensus 94 ~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l-~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~pl 172 (467)
T COG2211 94 AIVAVLLFITPDFSMTGKLIYALVTYMLLGL-GYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPL 172 (467)
T ss_pred HHHHHHHHcCCCcccCcchHHHHHHHHHHHH-HHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877774 1235667778888888 888888888899999986 579999999999999988655432 2
Q ss_pred hhhh-------chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHh
Q 013411 161 ARFI-------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVH 233 (443)
Q Consensus 161 ~~~~-------~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (443)
...+ ||+..-.+.+++..+..+.+++-.+|.+.+.+. .++..+.++++.+.
T Consensus 173 v~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~----------------------~~~~~~~~~~~~~~ 230 (467)
T COG2211 173 VKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQP----------------------TKTGVKLKLKDSFL 230 (467)
T ss_pred HHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCcccc----------------------CcccccccHHHHHH
Confidence 2222 566666667777777777777777776543220 11123345666666
Q ss_pred hhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHH
Q 013411 234 LLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGL 313 (443)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 313 (443)
.+++||.+...++..++.........+...+|.+...|.+...............+++. ++.+++.+|+|+|++...+.
T Consensus 231 ~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~-~~~p~L~~~~gkk~~~~~~~ 309 (467)
T COG2211 231 LIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGL-ILWPRLVKKFGKKKLFLIGL 309 (467)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhchHHHHHHHH
Confidence 66688888888888888888888888888889888888888887777766666666656 55589999999999999999
Q ss_pred HHHHHHHHHHHhhcc--hhHHHH-HHHHHHhhhhhhhHHHHHHHhcCC-------CCcchhHHhHHhHHHHHHHHHhHHh
Q 013411 314 LFGCVHMFLYSVAWS--SWVPYA-AAVFSILSVFSHPCLRTIVSKQVA-------SNEQGKAQGCISGICSFANLVSPLA 383 (443)
Q Consensus 314 ~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~g~~~~~~~ 383 (443)
++..++..++.+.+. .+..+. .++.+++.+...+..+++++|..+ .+..|...|..+++..+|.+++..+
T Consensus 310 ~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 310 LLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999888877763 233333 356678889999999999998875 4566889999999999999999999
Q ss_pred HHHHHHhhh
Q 013411 384 FSPLTALFL 392 (443)
Q Consensus 384 ~g~l~~~~~ 392 (443)
.|++.+..|
T Consensus 390 ~g~~L~~~G 398 (467)
T COG2211 390 PGWILGAIG 398 (467)
T ss_pred HHHHHHHcC
Confidence 999999865
No 114
>PRK11462 putative transporter; Provisional
Probab=99.88 E-value=1.6e-19 Score=172.11 Aligned_cols=336 Identities=11% Similarity=0.019 Sum_probs=218.7
Q ss_pred hhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccc----cccchhhH-HHHHHhHHHHH
Q 013411 19 FSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK----YGRKALLT-VPITLSIIPLA 93 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr----~Grr~~~~-~~~~~~~i~~~ 93 (443)
+...+....+..+..+ .+++++...|.+..+.-+--++..|+.|.++|| +||||..+ ++.+..+++..
T Consensus 23 ~~~~~~~~~l~~fyt~-------~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 23 IIFDNVMLYMMFFYTD-------IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred HHHHHHHHHHHHHHHH-------hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 3334444444545443 478999999999999999999999999999995 79877655 46677777766
Q ss_pred HHHhccCC---chhHHHHHHHHhhhhhccchhhhhhhhhhhcCCC-CCcchhHHHHHHHHhhhhhhhhhhhhh----hh-
Q 013411 94 ILAYSRSR---NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVP-PGRRASVFGIFSGIVSGAFVCGTISAR----FI- 164 (443)
Q Consensus 94 ~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~----~~- 164 (443)
++-..++. ..+..+.+.-.+..+ +.......-.++.+|.++ ++||++..++...+..+|..+++.+.. .+
T Consensus 96 llf~~p~~s~~~~~~y~~~~~~~~~~-~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g 174 (460)
T PRK11462 96 LAYSTPDLSMNGKMIYAAITYTLLTL-LYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIG 174 (460)
T ss_pred HHHhCCCCCcchHHHHHHHHHHHHHH-HHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 65544431 113445666666677 667777778889999987 679999999999998888776654432 22
Q ss_pred ------chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccC
Q 013411 165 ------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS 238 (443)
Q Consensus 165 ------~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (443)
+|+....+.+++.++...+.+...||.+++++ ++.+.++.++...+|
T Consensus 175 ~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~---------------------------~~~~~~~~l~~~~~N 227 (460)
T PRK11462 175 GDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPP---------------------------TTTSMREDLRDIWQN 227 (460)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCc---------------------------cCCCHHHHHHHHhCC
Confidence 35555555555555544444444455322111 112344444555577
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH
Q 013411 239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV 318 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 318 (443)
|.++......++.............+|.+..+|.+ ...+.+.....+..+++. ++++++.||+++|+....+..+..+
T Consensus 228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~-~l~~~l~~r~gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGS-ALAKPLTDWKCKVTIFWWTNALLAV 305 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHHHHHHHHHH
Confidence 77777766666666655555555666666655543 334556667777788887 5558999999998887655444433
Q ss_pred HHHHHHhhcch--hH-HHHHHHHHHhhhhhhhHHHHHHHhcCC-------CCcchhHHhHHhHHHHHHHHHhHHhHHHHH
Q 013411 319 HMFLYSVAWSS--WV-PYAAAVFSILSVFSHPCLRTIVSKQVA-------SNEQGKAQGCISGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 319 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (443)
...++.+.++. +. ....++.+++.+...+..+++..|..+ .+..|..++..+....+|..+++.+.|.+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL 385 (460)
T PRK11462 306 ISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML 385 (460)
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332221 11 222344466666666666777777766 334466667778999999999999999999
Q ss_pred Hhh
Q 013411 389 ALF 391 (443)
Q Consensus 389 ~~~ 391 (443)
+..
T Consensus 386 ~~~ 388 (460)
T PRK11462 386 AYG 388 (460)
T ss_pred HHc
Confidence 874
No 115
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.88 E-value=9.1e-19 Score=156.10 Aligned_cols=358 Identities=16% Similarity=0.121 Sum_probs=258.4
Q ss_pred cchhhhHHHHHHHHHHHhHHHHHhhhcccccccccc-----cchhhHH-HHHHhHHHHHHHHhc-----c-----C-Cch
Q 013411 41 DECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYG-----RKALLTV-PITLSIIPLAILAYS-----R-----S-RNF 103 (443)
Q Consensus 41 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~G-----rr~~~~~-~~~~~~i~~~~~~~~-----~-----~-~~~ 103 (443)
.|++++....+...+...+... ..+.+|+.+|+.+ ||..++. +..+...+..+..++ . + ...
T Consensus 8 vEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 3688999999999999888765 6899999999999 8877665 555555555444432 2 0 111
Q ss_pred h--HHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh-c----hhh--HHHHHH
Q 013411 104 F--YAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-S----TSA--AFQAAT 174 (443)
Q Consensus 104 ~--~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-~----w~~--~f~~~~ 174 (443)
. ....+.-.+.|+ +.+.......++++|..|+|+|+++.++.....-+|.+++..+.+.+ . -|. .+...+
T Consensus 87 ~g~~~a~l~F~l~G~-G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a 165 (403)
T PF03209_consen 87 LGLALAALAFLLYGL-GVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVA 165 (403)
T ss_pred HHHHHHHHHHHHHHh-hHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence 2 244566778888 88888888999999999999999999999999999999998888765 1 122 233333
Q ss_pred HHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhh
Q 013411 175 AGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLA 254 (443)
Q Consensus 175 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (443)
.+.+...++. .+-.|.+..+. .+.+++++.++++.++.+..+|..++.+...++..++
T Consensus 166 ~i~~~l~~ia-~wg~E~r~~~~---------------------~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a 223 (403)
T PF03209_consen 166 LIALLLNLIA-LWGQEPRRSRR---------------------AAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLA 223 (403)
T ss_pred HHHHHHHHHH-HHhcccCCccc---------------------ccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 3333322222 22233322222 0122334456666666666888888888888888888
Q ss_pred hhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhc---chhH
Q 013411 255 DAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW---SSWV 331 (443)
Q Consensus 255 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 331 (443)
+..-...+-+|--+.+|+++.+...+....+.+..++-...+-.+.+|.++++....+.....+++.++.... +.+.
T Consensus 224 ~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~ 303 (403)
T PF03209_consen 224 FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWL 303 (403)
T ss_pred HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 8888888999999999999999999999999998888866643444577888888888888887776655433 4455
Q ss_pred HHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCC--CCccchhHHHHH
Q 013411 332 PYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRA--PFNFPGFSIMCI 408 (443)
Q Consensus 332 ~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~--~~~~~~~~~~~~ 408 (443)
+-. .+++|++.+.......+.+.+..++++.|..+|.-...+.+...++..++|.+.|....... +..-....|.+-
T Consensus 304 ~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lE 383 (403)
T PF03209_consen 304 FRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALE 383 (403)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 444 67789999999999999999999999999999999999999999999999999987432211 222223455555
Q ss_pred HHHHHHHHHHHHHh
Q 013411 409 GFVSMTAFIQSIMI 422 (443)
Q Consensus 409 ~~~~~~~~~~~~~~ 422 (443)
++..+++.......
T Consensus 384 a~ll~~a~~ll~~l 397 (403)
T PF03209_consen 384 AVLLLAALVLLGRL 397 (403)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555443
No 116
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.86 E-value=1e-19 Score=167.12 Aligned_cols=363 Identities=20% Similarity=0.192 Sum_probs=243.1
Q ss_pred CCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccccccc-chhh
Q 013411 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGR-KALL 81 (443)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Gr-r~~~ 81 (443)
++|.+++..+..++.....+++.|..-+|.++. |.+.+....|++.++..++.+++++..|++..|.++ |+.+
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l------D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl 105 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL------DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL 105 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeecchhhhhc------CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH
Confidence 356667778888999999999999988887763 234555678999999999999999999999999997 8999
Q ss_pred HHHHHHhHHHHHHH-HhccCCc-hhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhh
Q 013411 82 TVPITLSIIPLAIL-AYSRSRN-FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTI 159 (443)
Q Consensus 82 ~~~~~~~~i~~~~~-~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 159 (443)
+.+.++..++.++. ++..-.+ ..+.++++|++.|+ |.+.. ....+|+++....++|.++++....+..+|.++||.
T Consensus 106 i~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gv-g~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~ 183 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGV-GVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPT 183 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCc-CcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHH
Confidence 99999999999888 4432222 37899999999999 76665 679999999999999999999999999999999988
Q ss_pred hhhhh------ch-----------hhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhc
Q 013411 160 SARFI------ST-----------SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVF 222 (443)
Q Consensus 160 l~~~~------~w-----------~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (443)
++..+ |+ ..+-|+.+++.++.++...++++|.+++.++++..++ ++++.+.++.+
T Consensus 184 ~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~--------~~~~~~~~~~~ 255 (488)
T KOG2325|consen 184 IQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV--------EEEKSDIEKVK 255 (488)
T ss_pred HHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc--------hhhccchhhhc
Confidence 77654 11 2456788888888888888999998776542111000 00000000011
Q ss_pred ccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhH----HHHHHHHHHHHHHHHHHHHHH
Q 013411 223 KRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQF----ADLMVIAGIAGTISQLIMMPV 298 (443)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 298 (443)
..+.+ .+.....+...+...+......+..+......++++.+++ |...+..++......+.....
T Consensus 256 ~~~~d----------~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~ 325 (488)
T KOG2325|consen 256 KPKLD----------WVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFT 325 (488)
T ss_pred cCChh----------HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11111 1222334444455555555556666777777778877664 334444444444443222111
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHhh----cc---------------------------hhHHHH--HHHHHHhhhhh
Q 013411 299 LAPTVGEARLLSFGLLFGCVHMFLYSVA----WS---------------------------SWVPYA--AAVFSILSVFS 345 (443)
Q Consensus 299 l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---------------------------~~~~~~--~~~~~~~~~~~ 345 (443)
-..++.+|+.+..+.+....+..+.... .. .+..+. .+++|.+.-..
T Consensus 326 ~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~ 405 (488)
T KOG2325|consen 326 RLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFI 405 (488)
T ss_pred HhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccc
Confidence 1133344554444433333332222110 00 001111 22334555555
Q ss_pred hhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 346 HPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 346 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
.....++-+|...|.++++..|+.......+..++|.+....+...
T Consensus 406 ~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~ 451 (488)
T KOG2325|consen 406 STALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS 451 (488)
T ss_pred cchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc
Confidence 6778899999999999999999999999999999999998888875
No 117
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.78 E-value=3e-16 Score=142.82 Aligned_cols=369 Identities=15% Similarity=0.113 Sum_probs=245.3
Q ss_pred CCCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccccc-ccchh
Q 013411 2 EKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-GRKAL 80 (443)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-Grr~~ 80 (443)
++.|.++.++..-+...++++-....+..|+.....++ ++.+..+..-+.++|..-.-+...++|+++||+ |+|++
T Consensus 18 ~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g---Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 18 GQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG---LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred CCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc---CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 45677888899999999998877777788888765444 778888888888888887888899999999997 99999
Q ss_pred hHHHHHHhHHHHHHHHhcc--CCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCC--cchhHHHHHHHHhhhhhhh
Q 013411 81 LTVPITLSIIPLAILAYSR--SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPG--RRASVFGIFSGIVSGAFVC 156 (443)
Q Consensus 81 ~~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~ 156 (443)
++.+.++..+|.++.+.+. + ...+.++-.+.++ |.|..-+...+++.|.+|++ +|...++++.++.++|.++
T Consensus 95 I~lGail~~iGh~~L~~~~~~~---~~gl~i~L~~I~i-G~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~ 170 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSVSG---PGGLYIGLALIIV-GTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLI 170 (498)
T ss_pred HHHHHHHHHHHHHHHhcccccc---ccHHHHHHHHHHh-ccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHH
Confidence 9999999999999999885 5 6788888899999 99999999999999999865 6788899999999999999
Q ss_pred hhhhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCC----CCccccccccccch-------------hhh-hhhhhh
Q 013411 157 GTISARFI----STSAAFQAATAGSIISAVYMRIFLPES----VRDEDLYTPILSSK-------------AEI-SASCEE 214 (443)
Q Consensus 157 g~~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~----~~~~~~~~~~~~~~-------------~~~-~~~~~~ 214 (443)
+|++.+++ +|+..|-+.++-..+.++.. ...|.. +..++. ..+++.. ... .....+
T Consensus 171 ~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f-~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (498)
T COG3104 171 APIITGLLAINYGWHVGFGLAAVGMIIGLVIF-LLGRRHVKGIGGVPDP-NPLSFNFLLPVLGGLVVMILAALLTLLLNQ 248 (498)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH-HHccchhcCCCCCCCc-cchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99888776 78888888877655544433 333322 111110 0000000 000 000000
Q ss_pred hhh-----------h----hhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHc-----CcCh
Q 013411 215 STK-----------K----LQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKF-----HFNK 274 (443)
Q Consensus 215 ~~~-----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~ 274 (443)
+.- . .+..+.++...+ + +|-.....+++...+++..+....+.+..|.++.. |++.
T Consensus 249 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e-r---~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~v 324 (498)
T COG3104 249 NTFSGVLLVISILIAIIYFAEAFRSPKVFDE-R---RRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEV 324 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccHHH-H---HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceec
Confidence 000 0 000000110111 0 01111222333333444444444445556655432 2222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-------hHHHHHHHHHHHHHHHHHhh-------c---ch-hHHHHHH
Q 013411 275 NQFADLMVIAGIAGTISQLIMMPVLAPTVGEA-------RLLSFGLLFGCVHMFLYSVA-------W---SS-WVPYAAA 336 (443)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-------~---~~-~~~~~~~ 336 (443)
..++..+...+.-++..+++. ++..|.+++ .-...+..+++.+++++... . +. |.+...+
T Consensus 325 -p~~~fQslNp~~Iii~~pI~a-~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~ 402 (498)
T COG3104 325 -PPAWFQSLNPFFIILFSPILA-ALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYV 402 (498)
T ss_pred -CHHHHHhhCHHHHHHHHHHHH-HHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHH
Confidence 235677888888888886664 666664332 23445666666666655543 1 22 3334467
Q ss_pred HHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHH
Q 013411 337 VFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFS 385 (443)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g 385 (443)
+..++.-+..|...+++.++.|+...+..++........++.++..+.+
T Consensus 403 l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 403 LQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 7789999999999999999999999999999888777777777766666
No 118
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.78 E-value=1.5e-16 Score=142.32 Aligned_cols=355 Identities=12% Similarity=0.033 Sum_probs=236.2
Q ss_pred hhHHHHHHHHhhhc---ccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHH
Q 013411 9 HLFITIFVHCFSTS---MVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI 85 (443)
Q Consensus 9 ~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~ 85 (443)
.+++...+..++.+ +....+..+.+... + +....-|..-+|++.+....+++-|+.||+|-|...+++.
T Consensus 45 ~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Y-------g-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 45 VVLLAFSLLNFSNGMQWIQYAPINNYVNSFY-------G-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred HHHHHHHHHHhcCcchheeehhHHHHHHHHh-------c-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 33333334444443 33344455555542 2 4445678899999999999999999999999999999999
Q ss_pred HHhHHHHHHHHhccCC---chhH--HHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhh
Q 013411 86 TLSIIPLAILAYSRSR---NFFY--AYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTIS 160 (443)
Q Consensus 86 ~~~~i~~~~~~~~~~~---~~~~--~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l 160 (443)
.+..++..+-..+... +.++ ....+..+.+. +.-........+..-|++++||..+..+-..+..+|.++|.++
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~-Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAA-AQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHH-hhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 9999999887776543 3355 77788888887 7666665556778899999999999998888877777777665
Q ss_pred hhhh----------chhh--HHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCch
Q 013411 161 ARFI----------STSA--AFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSI 228 (443)
Q Consensus 161 ~~~~----------~w~~--~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (443)
...+ .|.. .|+....+..+.+++..+..++.|+.... . .+.. ..+..-.
T Consensus 196 ppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps----------------~--s~~~-~~~~~f~ 256 (480)
T KOG2563|consen 196 PPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS----------------A--SQAA-LQDASFP 256 (480)
T ss_pred cceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc----------------h--hHhh-hhcCcHH
Confidence 5443 3433 35545555555455554555554443220 0 0000 0111123
Q ss_pred hHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc-ch
Q 013411 229 DDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGE-AR 307 (443)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 307 (443)
+.+.+.+ +++++....+........+++..+.+..-+... |++...+|+......++++++. .+.|.+.||.+. |.
T Consensus 257 ~si~~~~-~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~s-gY~~~~aG~ig~l~iv~Gmlga-~~~gii~Dktk~fk~ 333 (480)
T KOG2563|consen 257 KSIKSCF-KNRQFIILAICYGIGLGLFNSLSTLLNLALCPS-GYEGVFAGYIGALMIVAGMLGA-LASGIIADKTKKFKL 333 (480)
T ss_pred HHHHHHH-cCccHHHHHHHHhhhHHHHHHHHHHhhhccccc-cCCccccchhHHHHHHHHHHHH-HHHHhhhhhhhhHHH
Confidence 3334444 677777666666655555555554444333333 7777888999999999999999 555899999775 44
Q ss_pred HHHHHHHHHHHHHHHHHhhc----chhHHH-HHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHH
Q 013411 308 LLSFGLLFGCVHMFLYSVAW----SSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPL 382 (443)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~ 382 (443)
+.++......++...+.... ..+..+ ...++|.+.....|...-+..|..-|..-++..|+.+..+++-+++-..
T Consensus 334 ~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~ 413 (480)
T KOG2563|consen 334 TTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVF 413 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHH
Confidence 45555555444422222211 122233 3666788888888999999888877788899999999999999999999
Q ss_pred hHHHHHHhhhcC
Q 013411 383 AFSPLTALFLSD 394 (443)
Q Consensus 383 ~~g~l~~~~~~~ 394 (443)
+.+...+..+.+
T Consensus 414 ~~~~~~~~~~~~ 425 (480)
T KOG2563|consen 414 IMGILAEDLGPP 425 (480)
T ss_pred HHHHHhhccCCC
Confidence 988888775433
No 119
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=2e-17 Score=158.29 Aligned_cols=346 Identities=16% Similarity=0.182 Sum_probs=249.7
Q ss_pred CcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhcc------------------CC
Q 013411 40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSR------------------SR 101 (443)
Q Consensus 40 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~------------------~~ 101 (443)
++.++++.++.|++.+.+-++..+...+..+..-|.-|-|.+-++.++.+++++++++-+ +.
T Consensus 124 ErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~ 203 (735)
T KOG3626|consen 124 ERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP 203 (735)
T ss_pred hhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence 666888889999999999999999999999999999999999999999999999887530 00
Q ss_pred -----------------------------c--hhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHh
Q 013411 102 -----------------------------N--FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIV 150 (443)
Q Consensus 102 -----------------------------~--~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 150 (443)
+ .+..++++.++.|+ |....++...+|+-|...+++-...+|+.....
T Consensus 204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GI-G~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~ 282 (735)
T KOG3626|consen 204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGI-GATPIFTLGISYIDDNVKKKNSPLYLGILYSMA 282 (735)
T ss_pred ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhc-CCCCCccCCCccccccccccCCcHHHHHHHHHH
Confidence 0 13478899999999 999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhh-----------------------chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhh
Q 013411 151 SGAFVCGTISARFI-----------------------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAE 207 (443)
Q Consensus 151 ~~g~~~g~~l~~~~-----------------------~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 207 (443)
.+|.++|-+++++. -||..|++.+.+.++..+.. +++|...++.++++..++.+..
T Consensus 283 ~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~-f~fPk~lp~~~~~~~~~~~~~~ 361 (735)
T KOG3626|consen 283 ILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL-FFFPKELPKSQKRKRARDLHVL 361 (735)
T ss_pred HhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-HhCcccCccccccchhhhhccc
Confidence 99999998888763 27778888888888877655 6667655443321111111111
Q ss_pred hhhhhhhhhhhhhhcccCCchhH---HHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHH
Q 013411 208 ISASCEESTKKLQVFKRLPSIDD---MVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIA 284 (443)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 284 (443)
..+++ ..++.....+..++ ..+.+.+||.+....+...+....+.++.+++|-|++.+||.++..+..+....
T Consensus 362 k~~~~----~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i 437 (735)
T KOG3626|consen 362 KTESG----GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSI 437 (735)
T ss_pred ccccc----cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhh
Confidence 00000 00011111112222 222334789999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhhhccc--chHHHHHHHHHHHHHHH---HHhhc--------------------------------
Q 013411 285 GIAGTISQLIMMPVLAPTVGE--ARLLSFGLLFGCVHMFL---YSVAW-------------------------------- 327 (443)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~-------------------------------- 327 (443)
++.....+.+++|++.+|+.. |.......+...+..+. ..+..
T Consensus 438 ~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~ 517 (735)
T KOG3626|consen 438 GVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSD 517 (735)
T ss_pred hhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcC
Confidence 888888888999999998753 44444433333333332 22110
Q ss_pred ---------------------------------c------------h----------------------hHHHHHHHH-H
Q 013411 328 ---------------------------------S------------S----------------------WVPYAAAVF-S 339 (443)
Q Consensus 328 ---------------------------------~------------~----------------------~~~~~~~~~-~ 339 (443)
+ . ...++..++ .
T Consensus 518 C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~s 597 (735)
T KOG3626|consen 518 CSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGS 597 (735)
T ss_pred CCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHH
Confidence 0 0 001111122 2
Q ss_pred HhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHH-HHHHHhHHhHHHHHHhh
Q 013411 340 ILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS-FANLVSPLAFSPLTALF 391 (443)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~~ 391 (443)
+..+...+..+.++.+.+|+|+|.-++|+..++.+ +|.+-+|.++|+++|..
T Consensus 598 f~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~t 650 (735)
T KOG3626|consen 598 FIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTT 650 (735)
T ss_pred HHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhH
Confidence 22333445566667788999999999999988776 78899999999999973
No 120
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.75 E-value=9.4e-20 Score=174.41 Aligned_cols=348 Identities=16% Similarity=0.224 Sum_probs=2.9
Q ss_pred CcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhcc----C---------------
Q 013411 40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSR----S--------------- 100 (443)
Q Consensus 40 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~----~--------------- 100 (443)
++.++++.++.|++.+.+-++..+..++..++.+|..|-|.+-++.++.+++++++++-+ .
T Consensus 30 ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 30 ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 677999999999999999999999999999999998888888889999999988876410 0
Q ss_pred ----------------------------CchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhh
Q 013411 101 ----------------------------RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSG 152 (443)
Q Consensus 101 ----------------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 152 (443)
...+..++++.++.|+ |....++...+|+-|..++++-+..+|+......+
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~Gi-G~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l 188 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGI-GATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL 188 (539)
T ss_dssp ------------------------------------------SS-S----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhc-cccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence 0124678999999999 99999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhh--------------------------chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchh
Q 013411 153 AFVCGTISARFI--------------------------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKA 206 (443)
Q Consensus 153 g~~~g~~l~~~~--------------------------~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 206 (443)
|.++|-++++.. .||..|.+.+.+.++..+.. +.+|+..++.++.+..++.+.
T Consensus 189 GPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl-~~FPk~lp~~~~~~~~~~~~~ 267 (539)
T PF03137_consen 189 GPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL-FFFPKKLPGTSERQEEKESSE 267 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HcCCccCCCcccccchhhhhh
Confidence 999888877642 16777888887777665555 555554333211111111000
Q ss_pred hhhhhhhhh--hhhhhh---cccCCc-hhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHH
Q 013411 207 EISASCEES--TKKLQV---FKRLPS-IDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADL 280 (443)
Q Consensus 207 ~~~~~~~~~--~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 280 (443)
...++.+++ .++++. .+..+. ++..++ +.+||.+....+......+...++.++.|-|++.+|+.++.++..+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~-Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l 346 (539)
T PF03137_consen 268 RKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKR-LLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLL 346 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhhhhhcccccccccchhhhhhhHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 000000000 000000 011112 222223 3378888888888888999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc--cchHHHHHHHHHHHHHHH---HHhhc-----------c----------------
Q 013411 281 MVIAGIAGTISQLIMMPVLAPTVG--EARLLSFGLLFGCVHMFL---YSVAW-----------S---------------- 328 (443)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~-----------~---------------- 328 (443)
.....+.....+.+++|++.+|+. .|..+....+...++.+. ..+.. +
T Consensus 347 ~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~ 426 (539)
T PF03137_consen 347 TGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCS 426 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCC
Confidence 877777666666688899999875 344444443333333322 11100 0
Q ss_pred -------------------h----hHHHH--HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHH-HHHHHhHH
Q 013411 329 -------------------S----WVPYA--AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS-FANLVSPL 382 (443)
Q Consensus 329 -------------------~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~~~~ 382 (443)
. ..... ..+..+..+...........+.+|+++|+.+.|+...+.+ +|.+-+|.
T Consensus 427 Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPI 506 (539)
T PF03137_consen 427 CNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPI 506 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHH
Confidence 0 00111 1111223333445556667789999999999999987766 68899999
Q ss_pred hHHHHHHh
Q 013411 383 AFSPLTAL 390 (443)
Q Consensus 383 ~~g~l~~~ 390 (443)
++|.+.|.
T Consensus 507 ifG~iiD~ 514 (539)
T PF03137_consen 507 IFGAIIDS 514 (539)
T ss_dssp --------
T ss_pred HHhHHHhh
Confidence 99999998
No 121
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.68 E-value=6e-15 Score=139.00 Aligned_cols=373 Identities=14% Similarity=0.154 Sum_probs=231.3
Q ss_pred CcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccc-----cchhhHHHHHHhHHHHHHHHhccC-CchhHHHHHHHHh
Q 013411 40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYG-----RKALLTVPITLSIIPLAILAYSRS-RNFFYAYYVLRTL 113 (443)
Q Consensus 40 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~G-----rr~~~~~~~~~~~i~~~~~~~~~~-~~~~~~l~~~r~l 113 (443)
++++++++.+.....+...+... .-+++|.++|.+- ||+-++++.++..++...++..++ ..+.....+.-++
T Consensus 17 ~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~l 95 (433)
T PF03092_consen 17 KDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFL 95 (433)
T ss_pred HHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHH
Confidence 34588889998888888888865 4688999999763 444556677776666655555433 2225666667777
Q ss_pred hhhhccchhhhhhhhhhhcCCC--CCcchhHHHHHHHHhhhhhhhhhhhhhhh----chhhHHHHHHHHHHHHHHHHHHh
Q 013411 114 TAMVCEGSIHCLSLAYVADNVP--PGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIF 187 (443)
Q Consensus 114 ~G~~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~ 187 (443)
..+ +......+..+++.|... +++||...+.......+|.+++..+++.+ +++..|.+.+.+..+..+...+.
T Consensus 96 a~~-g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 96 ASF-GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFL 174 (433)
T ss_pred HHH-HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHh
Confidence 787 888888999999999884 34577888888888888988888777765 67888988888877776666566
Q ss_pred ccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHH-HHHHHHhhhhhhHHHHHHHH
Q 013411 188 LPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAI-VAFLSNLADAGLQGSMMYYL 266 (443)
Q Consensus 188 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (443)
.+|.+++++ .+.... .++ +........++..++.++.+ +.+.++...+ ..++............-++.
T Consensus 175 ~~e~~~~~~-~~~~~~-------~~~--~~~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~ 243 (433)
T PF03092_consen 175 LEERKVRPA-DEVFSF-------GKE--EVPCLFGSFREQLSELWRAL-QQRAIWQPILFFIFFFNLPPSISSASSFYFQ 243 (433)
T ss_pred hhhcccccc-chhhcc-------ccc--ccchhhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHhccCCCCccEEEEE
Confidence 665222111 100000 000 00000000112334444444 3455555444 23322222211111011122
Q ss_pred HHHcC---cChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHh-h---------cchhHHH
Q 013411 267 KAKFH---FNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSV-A---------WSSWVPY 333 (443)
Q Consensus 267 ~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~ 333 (443)
.+..+ +++...+.+..+..++.+++..+. .....+..-|+++..+.++..+..+.-.. . ++.+...
T Consensus 244 ~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y-~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~l 322 (433)
T PF03092_consen 244 TDALGGPHFSPSFYGTLSIVGSIASLLGILLY-RKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFAL 322 (433)
T ss_pred eccccccccCHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEE
Confidence 23345 888888888877777777777555 34555556677776666655544332111 0 1112222
Q ss_pred H-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHH
Q 013411 334 A-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVS 412 (443)
Q Consensus 334 ~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (443)
. .++..+.....+-....+++|+.|+...|+.+++...+.++|..++..++..+.+..+-....+.-.....++..++.
T Consensus 323 gd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ 402 (433)
T PF03092_consen 323 GDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQ 402 (433)
T ss_pred EhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHH
Confidence 2 444555666667778888999999999999999999999999999999999999987644444433444556666666
Q ss_pred HHHHHHHHHhhcCC
Q 013411 413 MTAFIQSIMIRVAP 426 (443)
Q Consensus 413 ~~~~~~~~~~~~~~ 426 (443)
++.+.+.....+++
T Consensus 403 ll~l~ll~lLp~~~ 416 (433)
T PF03092_consen 403 LLPLPLLFLLPPQK 416 (433)
T ss_pred HHHHHHHHHcCCCc
Confidence 66666665555443
No 122
>PRK10054 putative transporter; Provisional
Probab=99.60 E-value=1.7e-13 Score=128.75 Aligned_cols=151 Identities=13% Similarity=0.090 Sum_probs=128.4
Q ss_pred ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Q 013411 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC 317 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (443)
+|.++.+.+..++..........++|.|+++.+|+++.+.|+..+...+...+.+++. |+++||+|||+.+..+..+..
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~-G~l~Dr~g~k~~~~~~~~~~~ 84 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGF-GILADKFDKKRYMLLAITAFA 84 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCcchhHHHHHHHHH
Confidence 4556777778888888888888899999998899999999999999999999998555 899999999999999998888
Q ss_pred HHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHH
Q 013411 318 VHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTA 389 (443)
Q Consensus 318 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 389 (443)
++.+.+.+.++.+..+. ..+.+.+.+...+...++..|.+|+++|+++.|+.+...++|..++|.+.+.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~ 157 (395)
T PRK10054 85 SGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM 157 (395)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777655544 3344555566678889999999999999999999999999999999999998875
No 123
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.60 E-value=2.7e-15 Score=119.27 Aligned_cols=133 Identities=25% Similarity=0.366 Sum_probs=116.9
Q ss_pred HHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcC
Q 013411 54 QAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADN 133 (443)
Q Consensus 54 ~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~ 133 (443)
.+.+.++..+++++.|++.||+|||+.+..+.....++.+.....++ ++.+.+.+++.|+ +.+...+...+++.|.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~ 79 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN---ITVLIIARFLQGF-GAAFALVAGAALIADI 79 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHhHHHHHHHH
Confidence 34556788899999999999999999999999999999888888888 8999999999999 8888889999999999
Q ss_pred CCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----chhhHHHHHHHHHHHHHHHHHHhccC
Q 013411 134 VPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIFLPE 190 (443)
Q Consensus 134 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e 190 (443)
+|+++|++..+..+....+|..++|.+++.+ +|++.|++.+...++..+...+..||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999888765 78899998888777766666566665
No 124
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.59 E-value=4.2e-13 Score=118.27 Aligned_cols=270 Identities=13% Similarity=0.085 Sum_probs=175.8
Q ss_pred HHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHH
Q 013411 11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII 90 (443)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i 90 (443)
+....+...+..+..|.+=...+ +.+.+..+++.+....+...++..++.|.++||+|||+.-+..+++.++
T Consensus 40 l~vY~La~~aDWLQGpY~Y~LY~--------~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~ 111 (354)
T PF05631_consen 40 LLVYLLAMAADWLQGPYLYALYE--------SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSL 111 (354)
T ss_pred HHHHHHHHHHHHhhcchhHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 45556667778888887644433 3577778899999999999999999999999999999999998888888
Q ss_pred HHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhh-hhcCCC----CCcchhHHHHHH-HHhhhhhhhhhhhhhhh
Q 013411 91 PLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAY-VADNVP----PGRRASVFGIFS-GIVSGAFVCGTISARFI 164 (443)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~-i~~~~~----~~~r~~~~~~~~-~~~~~g~~~g~~l~~~~ 164 (443)
+++ +-.+++ ++.++++|++.|+ +.+....+-.++ +.|+-. ++..+..++... ...++-.+....++..+
T Consensus 112 scl-~k~~~~---~~~L~~GRvlgGi-aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l 186 (354)
T PF05631_consen 112 SCL-TKHSSN---YPVLLLGRVLGGI-ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL 186 (354)
T ss_pred HHH-HHhccc---cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 875 445577 9999999999999 888888887776 455533 222233333222 22223333344444433
Q ss_pred ------chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccC
Q 013411 165 ------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS 238 (443)
Q Consensus 165 ------~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (443)
+...+|.....+.++..+++...-+|+..+.++ ..+.....++..+.++++
T Consensus 187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~-----------------------~~~~~~~~~~a~~~i~~d 243 (354)
T PF05631_consen 187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSS-----------------------SSSLSGSFREAWRAILSD 243 (354)
T ss_pred HHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCccc-----------------------ccchHHHHHHHHHHHHcC
Confidence 336788888888777777665666666443220 011112344555556678
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhh-hhcccchHHHHHHHHHH
Q 013411 239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLA-PTVGEARLLSFGLLFGC 317 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~ 317 (443)
|+++.+.++..+.-.+.+.+....++-++.. + ...-.|.+++...+..++|+.+. +++. ++......+...+.+.+
T Consensus 244 ~ril~LG~~qslFE~smy~FVflWtPaL~~~-~-~~~P~GlIFssFM~a~MlGS~lf-~~l~s~~~~~e~~l~~v~~~aa 320 (354)
T PF05631_consen 244 PRILLLGLIQSLFEGSMYLFVFLWTPALDPD-D-EELPLGLIFSSFMVAMMLGSSLF-SRLLSKSLRPESLLRYVFAVAA 320 (354)
T ss_pred chhHHHHHHHHHHHHHHHHheeeeeceecCC-C-CCCCchHHHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHH
Confidence 8888777777777666665544444444421 2 22336899999999999999666 3444 44333344444444443
Q ss_pred HH
Q 013411 318 VH 319 (443)
Q Consensus 318 ~~ 319 (443)
++
T Consensus 321 ~~ 322 (354)
T PF05631_consen 321 VS 322 (354)
T ss_pred HH
Confidence 33
No 125
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.59 E-value=1.4e-13 Score=131.95 Aligned_cols=154 Identities=11% Similarity=0.107 Sum_probs=132.8
Q ss_pred cChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--cCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-cccchHHHHHH
Q 013411 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAK--FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT-VGEARLLSFGL 313 (443)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~ 313 (443)
+++.++.+....++..+++++...++|.|+++. +|++..+++...+...+...++. +.+|+++|| +|||+++..+.
T Consensus 8 ~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~-~~~G~laDr~~G~~~~l~~~~ 86 (475)
T TIGR00924 8 HPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLT-SVGWWFGDRVWGTKKTMVLGG 86 (475)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHhhcchHHHHHHHH
Confidence 456667777788888899999999999999887 89999999999999999999999 555899999 89999999999
Q ss_pred HHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCc---chhHHhHHhHHHHHHHHHhHHhHHHHHH
Q 013411 314 LFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNE---QGKAQGCISGICSFANLVSPLAFSPLTA 389 (443)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 389 (443)
.+.+++.+++...++.+.... ..+.+++.+...+...+++.+.+|+++ |+++.++.+...++|..++|.+.+.+.+
T Consensus 87 ~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~ 166 (475)
T TIGR00924 87 IVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE 166 (475)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888887766554443 455678888888999999999998764 8889999999999999999999999988
Q ss_pred hh
Q 013411 390 LF 391 (443)
Q Consensus 390 ~~ 391 (443)
..
T Consensus 167 ~~ 168 (475)
T TIGR00924 167 NY 168 (475)
T ss_pred hc
Confidence 64
No 126
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.57 E-value=4.8e-14 Score=133.24 Aligned_cols=185 Identities=12% Similarity=0.104 Sum_probs=140.3
Q ss_pred hhhHHHHHHHHhhhcccccchhHHHHhh-cCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHH
Q 013411 8 SHLFITIFVHCFSTSMVAPAITDVTMSA-VCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT 86 (443)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~ 86 (443)
+.+.+..++............|.+.++. .++.. .-+.+....|...++..++..++.++.|+++||+|||+++..+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~ 289 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEF-ADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLV 289 (418)
T ss_pred eeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3444444444444444445556665542 11100 012345677999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhcc-CCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHH-HHhhhhhhhhhhhhhhh
Q 013411 87 LSIIPLAILAYSR-SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFS-GIVSGAFVCGTISARFI 164 (443)
Q Consensus 87 ~~~i~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~~ 164 (443)
+.+++..+..... +...++.+++.+++.|+ +.+...+....++.|++|+++|++++++.+ ...++|..+||.+++.+
T Consensus 290 ~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~-~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l 368 (418)
T TIGR00889 290 AWALRFGFFAYGDPEYFGYALLFLSMIVYGC-AFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVM 368 (418)
T ss_pred HHHHHHHHHHHcCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9988877666642 21124667888999999 888888888999999999999999999997 67889999999988764
Q ss_pred ----------chhhHHHHHHHHHHHHHHHHHHhccCCCCc
Q 013411 165 ----------STSAAFQAATAGSIISAVYMRIFLPESVRD 194 (443)
Q Consensus 165 ----------~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~ 194 (443)
+|+..|.+.+++.++..++..+++||+.+.
T Consensus 369 ~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 369 VEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 488999999988888888888888987543
No 127
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.55 E-value=8.6e-13 Score=124.74 Aligned_cols=176 Identities=9% Similarity=0.136 Sum_probs=134.7
Q ss_pred cChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccchHHHHHHHH
Q 013411 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV-GEARLLSFGLLF 315 (443)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~ 315 (443)
+++.++..+...+...+.++++..++|.|+++.+|+++.+++...........++. +.+|+++||+ |||+.+..+.++
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~-ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTP-ILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCcHHHHHHHHHH
Confidence 45566677777788888899999999999999899999999999988888888887 5668999999 999999999999
Q ss_pred HHHHHHHHHhhcc-hhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCC--cchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 316 GCVHMFLYSVAWS-SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASN--EQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 316 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
..++.+++..... ...... ..+..++.+...+...+++.|.+|++ +|++++++.+...++|+.++|.+.|++.+..
T Consensus 86 ~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~ 165 (493)
T PRK15462 86 MAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY 165 (493)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888766654322 122222 33344566666677889999999976 6999999999999999999999999998764
Q ss_pred hcCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 013411 392 LSDRAPFNFPGFSIMCIGFVSMTAFIQSIM 421 (443)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (443)
+ + ...|.+.++..+++.+....
T Consensus 166 G-------w-~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 166 S-------W-AMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred C-------h-HHHHHHHHHHHHHHHHHHHH
Confidence 2 1 33455555544544444433
No 128
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.53 E-value=1.6e-13 Score=129.99 Aligned_cols=170 Identities=19% Similarity=0.269 Sum_probs=135.0
Q ss_pred HHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHH
Q 013411 14 IFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLA 93 (443)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~ 93 (443)
.+..........+.++.+..+... +.+......|++.++..++..++.+..|+++||+|||+.+..+.....++.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 303 (408)
T PRK09874 228 TLIIQVATGSIAPILTLYVRELAG----NVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLI 303 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 334444555566777777766321 1111223457777888899999999999999999999999999888888777
Q ss_pred HHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----chhhH
Q 013411 94 ILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAA 169 (443)
Q Consensus 94 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~ 169 (443)
...+.++ .+.+++.+++.|+ +.+...+...+++.|..|+++|++.+++.+....+|..+||.+++.+ +|+..
T Consensus 304 ~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~ 379 (408)
T PRK09874 304 PMSFVQT---PLQLGILRFLLGA-ADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAV 379 (408)
T ss_pred HHHHhcc---HHHHHHHHHHHHh-hhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHH
Confidence 7777777 7888899999999 88888899999999999999999999999999999999999998865 79999
Q ss_pred HHHHHHHHHHHHHHHHHhccCC
Q 013411 170 FQAATAGSIISAVYMRIFLPES 191 (443)
Q Consensus 170 f~~~~~~~~~~~~~~~~~~~e~ 191 (443)
|++.+++.++..+..++..++.
T Consensus 380 f~~~~~~~l~~~~~~~~~~~~~ 401 (408)
T PRK09874 380 FLVTAGVVLFNAVYSWNSLRRR 401 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988888776665554443
No 129
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.51 E-value=9.6e-14 Score=131.84 Aligned_cols=159 Identities=11% Similarity=0.048 Sum_probs=128.6
Q ss_pred chhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHH
Q 013411 27 AITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYA 106 (443)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 106 (443)
..|.+..+.. .+.+.+..+.|++.++..++..++.+++|+++||+|||+.+..+.++.+++..+.+++++ .+.
T Consensus 245 ~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~---~~~ 317 (420)
T PRK09528 245 QFPNFFASFF----ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG---PLE 317 (420)
T ss_pred HHHHHHHHHH----hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc---HHH
Confidence 3566655532 112445567899999999999999999999999999999999999999998888888888 888
Q ss_pred HHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHH-HHHHhhhhhhhhhhhhhhh----chhhHHHHHHHHHHHHH
Q 013411 107 YYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGI-FSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISA 181 (443)
Q Consensus 107 l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~~~~ 181 (443)
+++.+++.|+ +.+...+....++.|.+|++.|+...+. .+....+|.+++|.+.+.+ ||+..|.+.+++.++..
T Consensus 318 ~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~ 396 (420)
T PRK09528 318 VSILKLLHAF-EVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFT 396 (420)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 8999999998 8777777788999999999999887655 5677788888888888765 89999999888877766
Q ss_pred HHHHHhccCCCC
Q 013411 182 VYMRIFLPESVR 193 (443)
Q Consensus 182 ~~~~~~~~e~~~ 193 (443)
++.+..++++++
T Consensus 397 ~~~~~~~~~~~~ 408 (420)
T PRK09528 397 LISVFTLSGDRE 408 (420)
T ss_pred HHHHHHhcCCch
Confidence 666566665443
No 130
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.51 E-value=2.4e-13 Score=131.46 Aligned_cols=164 Identities=13% Similarity=0.084 Sum_probs=115.2
Q ss_pred hhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHH---H
Q 013411 19 FSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAI---L 95 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~---~ 95 (443)
.........+|.+.++. ++.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..+.... .
T Consensus 264 ~~~~~~~~~~p~~l~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 336 (490)
T PRK10642 264 VTYYMLLTYMPSYLSHN-------LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFIL 336 (490)
T ss_pred HHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555677776542 3444555677788888999999999999999999999988877654433322 2
Q ss_pred HhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh-----chhhHH
Q 013411 96 AYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-----STSAAF 170 (443)
Q Consensus 96 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-----~w~~~f 170 (443)
..+++ ...+++++++.|+ +.+........++.|.+|++.|+++++.......++..++|.+.+++ +|+.++
T Consensus 337 ~~~~~---~~~~~~~~~~~g~-~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~ 412 (490)
T PRK10642 337 INSNV---IGLIFAGLLMLAV-ILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPA 412 (490)
T ss_pred HhCCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Confidence 22344 6778888999988 66666667778889999999999999975444445556677666653 467676
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCc
Q 013411 171 QAATAGSIISAVYMRIFLPESVRD 194 (443)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~e~~~~ 194 (443)
++..+.+++..+. .+++||+|++
T Consensus 413 ~~~~~~~~i~~~~-~~~~pes~~~ 435 (490)
T PRK10642 413 YYLMVVAVIGLIT-GVTMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHH-HHHhccccCC
Confidence 6666665554444 4667999875
No 131
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.51 E-value=1.2e-12 Score=121.27 Aligned_cols=164 Identities=21% Similarity=0.285 Sum_probs=128.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHh
Q 013411 246 IVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSV 325 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (443)
+..++..+.........|.++.+.+|.++.+.++..+...++..++.++. |++.||+|||+.+..+.++.+++.....+
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFA-GYLSDRFGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHH-HHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence 44555555666666667767777789999999999999999999999555 79999999999999999999988555555
Q ss_pred hcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhH
Q 013411 326 AWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFS 404 (443)
Q Consensus 326 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 404 (443)
.++.+.... .++.|++.+...+...+++.|.+|+++|+++++..+....+|..++|.+.+.+.+..+ ....
T Consensus 82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~--------~~~~ 153 (352)
T PF07690_consen 82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG--------WRWA 153 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH--------HCCH
T ss_pred hhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc--------cccc
Confidence 455554443 5667888889999999999999999999999999999999999999999999986642 1235
Q ss_pred HHHHHHHHHHHHHH
Q 013411 405 IMCIGFVSMTAFIQ 418 (443)
Q Consensus 405 ~~~~~~~~~~~~~~ 418 (443)
+++.+++.++..++
T Consensus 154 ~~~~~~~~~~~~il 167 (352)
T PF07690_consen 154 FLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhh
Confidence 56666666666553
No 132
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.51 E-value=2.2e-12 Score=122.93 Aligned_cols=147 Identities=11% Similarity=0.164 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 013411 243 QAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFL 322 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 322 (443)
..++..++..+.........|.+.++ +|+++.+.++..+...++..+++++. |++.||+|||+.+..+.++.+++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~-G~l~dr~g~r~~~~~~~~~~~~~~~~ 104 (434)
T PRK11663 27 TMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVS-GIVSDRSNARYFMGIGLIATGIINIL 104 (434)
T ss_pred HHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhh-hHHHhhcCCchhHHHHHHHHHHHHHH
Confidence 34444445444445566677777766 79999999999999999999999555 89999999999999999999999888
Q ss_pred HHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 323 YSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 323 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
....++.+.... .++.+++.+...+...+++.+.+|+++|++++|+.+....+|..++|.+.+.+.+..
T Consensus 105 ~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 174 (434)
T PRK11663 105 FGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY 174 (434)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 888777665554 345577777788889999999999999999999999999999999999999998764
No 133
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.51 E-value=2.7e-12 Score=120.84 Aligned_cols=147 Identities=12% Similarity=0.075 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Q 013411 242 SQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMF 321 (443)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (443)
..++...++.....+....+++.|+++.+|+++.+.|+..+...+...+..++. |+++||+|||+.+..+..+..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~-G~l~dr~g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFG-GAIADRFGAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhh-hHHHHHhCchHHHHHHHHHHHHHHH
Confidence 345566777777778888889999988889999999999999999998888444 7999999999999999999999998
Q ss_pred HHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHH
Q 013411 322 LYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTA 389 (443)
Q Consensus 322 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 389 (443)
.+...++.+..+. ..+.+++.+...|...+++.+.+|+|+|+++.|+.+...++|..++|.+.|.+.+
T Consensus 92 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~ 160 (400)
T PRK11646 92 TMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ 160 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777665554 4555777777788899999999999999999999999999999999999999984
No 134
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=99.51 E-value=6e-11 Score=107.76 Aligned_cols=322 Identities=14% Similarity=0.093 Sum_probs=204.9
Q ss_pred HHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhh
Q 013411 52 FQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVA 131 (443)
Q Consensus 52 ~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~ 131 (443)
-+.-...-.++...++...+.|..+.|++++++.+...+...+..+.++ ...+-+..++.|+ +.+. ..+-++++-
T Consensus 45 ~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s---v~~mq~~q~~yg~-~~a~-evay~sYiy 119 (412)
T PF01770_consen 45 EIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS---VLAMQLMQFFYGL-ATAA-EVAYYSYIY 119 (412)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc---HHHHHHHHHHHHH-HHHH-HHHHHHHhe
Confidence 3444455566778889999999999999999999999999999999999 9999999999998 6555 567889999
Q ss_pred cCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh------chhhHHHHHHHHHHHHHHHHHHhccCCCCcc---ccccc--
Q 013411 132 DNVPPGRRASVFGIFSGIVSGAFVCGTISARFI------STSAAFQAATAGSIISAVYMRIFLPESVRDE---DLYTP-- 200 (443)
Q Consensus 132 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~------~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~---~~~~~-- 200 (443)
-..|+++-.++.+...++..+|..++..+|..+ +.+...++......+ .++..+++|..++.. ++...
T Consensus 120 s~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~-a~~~~~fLP~~~~S~~f~r~~~~~~ 198 (412)
T PF01770_consen 120 SVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSL-ALLIALFLPMPKRSLFFHRKPPAEQ 198 (412)
T ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHcCCCCcccceeccCcccc
Confidence 999999999999999999999999998888875 234444555443334 333447788765421 11100
Q ss_pred -cccchhhhhhhhhhh--hhhhhhc----ccCCc----hhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 013411 201 -ILSSKAEISASCEES--TKKLQVF----KRLPS----IDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAK 269 (443)
Q Consensus 201 -~~~~~~~~~~~~~~~--~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (443)
.++.+.+..++.++. +.+++++ ..... +++..+.. ++|.+....+=..+...++....++.....++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y-~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v 277 (412)
T PF01770_consen 199 DANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCY-SNPRLLLWSLWWAFATCGYYQVINYVQSLWDTV 277 (412)
T ss_pred ccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 000011100000000 0000001 11111 22333333 455555444444444444444555555544443
Q ss_pred --cCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccch--HHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhh
Q 013411 270 --FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEAR--LLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVF 344 (443)
Q Consensus 270 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 344 (443)
-+-...-.|..-+...+.+.++.+.. |++..++.+.. .+....++.+..++++....+.|..+. .+++......
T Consensus 278 ~~~~~~~vYNG~VeA~~tllgA~~al~~-g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~f 356 (412)
T PF01770_consen 278 PPSDNESVYNGAVEAASTLLGAIAALLA-GYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMF 356 (412)
T ss_pred CCCCCCcccchHHHHHHHHHHHHHHHHH-hHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 12223336777777788888777444 67755555433 333344455566667777778888777 5556777777
Q ss_pred hhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhH
Q 013411 345 SHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSP 381 (443)
Q Consensus 345 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~ 381 (443)
..+.....++.....|.-|-++|+++++..+-..+-.
T Consensus 357 liTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT 393 (412)
T PF01770_consen 357 LITIASFQIAKNLSEERYALVFGINTFVALVLQTILT 393 (412)
T ss_pred HHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHheE
Confidence 7888888888888889999999999888665554443
No 135
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.50 E-value=2.4e-12 Score=119.93 Aligned_cols=146 Identities=15% Similarity=0.142 Sum_probs=122.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Q 013411 244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY 323 (443)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 323 (443)
+....++..+........+|.|..+ .+.++.+.+...+...++..++.++. |++.||+|||+.+..+..+..++..+.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~-G~l~dr~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIA-GALADRYDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhh-hHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 4556666666666777778888877 49999999999999999999999555 799999999999999988887777766
Q ss_pred Hhhc-----chhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 324 SVAW-----SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 324 ~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
.... +.+..+. ..+.+++.+...+...+++.|.+|+++|++++|..+....+|..++|.+.+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 155 (365)
T TIGR00900 82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL 155 (365)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655 5555544 555688888888999999999999999999999999999999999999999998874
No 136
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.1e-12 Score=117.17 Aligned_cols=167 Identities=13% Similarity=0.100 Sum_probs=134.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcch
Q 013411 250 LSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSS 329 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (443)
.+.+.--.++.- .+++.+..++|..+.|.+.+...+..-++. ++.|.++||.+.|..+..+++++++..+++++.++.
T Consensus 40 ~fYl~RknF~~a-~p~l~e~~~lsk~~lG~i~s~f~i~YG~sK-f~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~ 117 (448)
T COG2271 40 AFYLTRKNFNLA-MPALIEDGGLSKTQLGILGSAFSITYGVSK-FVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSL 117 (448)
T ss_pred HHHHHHHhHhhc-cHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHH
Confidence 333333334433 345555568999999999999999999999 555899999999999999999999999999999987
Q ss_pred hHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhH--HHHHHhhhcCCCCCccchhHHH
Q 013411 330 WVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAF--SPLTALFLSDRAPFNFPGFSIM 406 (443)
Q Consensus 330 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~--g~l~~~~~~~~~~~~~~~~~~~ 406 (443)
+...+ ..+-|.+.+...|.....+.+-+|+++||+..++-|...++|+.+.|.+. +++.++. .....|+
T Consensus 118 ~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~--------~w~~~f~ 189 (448)
T COG2271 118 FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG--------GWRAAFY 189 (448)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc--------chhHHHH
Confidence 76665 55669999999999999999999999999999999999999999999999 7777663 1234667
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 013411 407 CIGFVSMTAFIQSIMIRVAP 426 (443)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~ 426 (443)
+.++++++..++.+...|.+
T Consensus 190 ~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 190 FPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 77777776666655554443
No 137
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.48 E-value=4.4e-12 Score=119.18 Aligned_cols=162 Identities=10% Similarity=0.032 Sum_probs=125.0
Q ss_pred HHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchh
Q 013411 251 SNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSW 330 (443)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (443)
............|.+. +.+|.++.+.++..+...++..++.++. |++.||+|||+.+..+..+..++.+.....++.+
T Consensus 17 ~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~-g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 94 (385)
T TIGR00710 17 GPLGIDMYLPAFPEIA-ADLSTPASIVQMTLTLYLLGFAAGQLLW-GPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE 94 (385)
T ss_pred HHHHHHHhcccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhh-hhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence 3333344444455554 4579999999999999999999999555 7999999999999999999998888888877766
Q ss_pred HHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHH
Q 013411 331 VPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIG 409 (443)
Q Consensus 331 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 409 (443)
.... .++.+++.+...+...+++.|.+|+++|+++.|..+....+|..++|.+.+.+.+..+ + ...+.+.+
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-------~-~~~~~~~~ 166 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-------W-HAIFAFLS 166 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------H-HHHHHHHH
Confidence 6555 4566788888889999999999999999999999999999999999999999887642 1 23444445
Q ss_pred HHHHHHHHHHHHh
Q 013411 410 FVSMTAFIQSIMI 422 (443)
Q Consensus 410 ~~~~~~~~~~~~~ 422 (443)
+..++.....+..
T Consensus 167 ~~~~~~~~~~~~~ 179 (385)
T TIGR00710 167 LAGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHHh
Confidence 5544444444433
No 138
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.47 E-value=6e-12 Score=120.80 Aligned_cols=154 Identities=12% Similarity=0.065 Sum_probs=129.4
Q ss_pred cChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-cccchHHHHHHHH
Q 013411 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT-VGEARLLSFGLLF 315 (443)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~ 315 (443)
+++.++..+...+...+++++...+++.|+++.+|++..+.++..........+.. +.+|+++|| +|||+++..+.++
T Consensus 12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~-~~~G~laDr~~G~r~~~~~g~~~ 90 (489)
T PRK10207 12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLI-SIGGYVGDHLLGTKRTIVLGAIV 90 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hhHHHhhhhccchHHHHHHHHHH
Confidence 45667777778888889999999999999999999999998888877777777766 466899999 9999999999999
Q ss_pred HHHHHHHHHhhcchhH-H-HHHHHHHHhhhhhhhHHHHHHHhcCCCC--cchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 316 GCVHMFLYSVAWSSWV-P-YAAAVFSILSVFSHPCLRTIVSKQVASN--EQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 316 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
..++.+...+..+... . ....+.+++.+...|...+++.|.+|++ +|++++++.+...++|..++|.+.|++.++.
T Consensus 91 ~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~ 170 (489)
T PRK10207 91 LAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF 170 (489)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999888877655333 2 2345567888888899999999999977 4578999999999999999999999998875
No 139
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.47 E-value=3e-12 Score=121.57 Aligned_cols=156 Identities=17% Similarity=0.074 Sum_probs=123.6
Q ss_pred hhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHH
Q 013411 234 LLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGL 313 (443)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 313 (443)
.++++|.++...+..++..+.........|.+.++. +.++.+.|...+...++..+++++. |++.||++||+.+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~g~~~~~~~l~~~~~~~~~-G~l~dr~g~~~~l~~~~ 89 (417)
T PRK10489 12 LLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMM-TGSTLQVGLSVTLTGGAMFIGLMVG-GVLADRYDRKKLILLAR 89 (417)
T ss_pred HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHhh-HHHhhhcCCceEEEehH
Confidence 344677777777777777777777777788887765 7799999999999999999999555 79999999999988887
Q ss_pred HHHHHHHHHHHh-----hcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHH
Q 013411 314 LFGCVHMFLYSV-----AWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL 387 (443)
Q Consensus 314 ~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 387 (443)
.+.+++...+.. .++.+.... .++.+++.+...+...+.+.+.+|+++|+++.++.+...++|..++|.+.|.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l 169 (417)
T PRK10489 90 GTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLL 169 (417)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence 777666554432 223333333 44456777777788899999999999999999999999999999999999999
Q ss_pred HHhh
Q 013411 388 TALF 391 (443)
Q Consensus 388 ~~~~ 391 (443)
.+..
T Consensus 170 ~~~~ 173 (417)
T PRK10489 170 IAAG 173 (417)
T ss_pred HHHH
Confidence 8864
No 140
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.46 E-value=9.5e-13 Score=123.79 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=120.8
Q ss_pred hhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhcc
Q 013411 20 STSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSR 99 (443)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~ 99 (443)
.........|.+.++ +++.+..+.|++.+...++..++.++.|+++||+|||+.+..+.....+........+
T Consensus 231 ~~~~~~~~~p~~l~~-------~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 303 (393)
T PRK15011 231 TNSLYIINMPLFIIN-------ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH 303 (393)
T ss_pred HHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444556767654 3566677788888888888888999999999999999988877666655555555566
Q ss_pred CCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----chhhHHHHHHH
Q 013411 100 SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATA 175 (443)
Q Consensus 100 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~ 175 (443)
+ .+.+++.+++.++ +.+...+....+..|..| ++|+++.++.+....+|..+||.+++.+ +|+..|++.++
T Consensus 304 ~---~~~~l~~~~l~~~-~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~ 378 (393)
T PRK15011 304 S---PAILLGLQLLNAI-YIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALV 378 (393)
T ss_pred h---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6 7778889998887 777776777788899988 4699999999888899999998888764 78889888777
Q ss_pred HHHHHHHHHHHhccC
Q 013411 176 GSIISAVYMRIFLPE 190 (443)
Q Consensus 176 ~~~~~~~~~~~~~~e 190 (443)
+.++..+.. ++.||
T Consensus 379 ~~~~~~~~~-~~~~~ 392 (393)
T PRK15011 379 MIIATLFCL-LRIKD 392 (393)
T ss_pred HHHHHHHHH-HhhcC
Confidence 776655444 55564
No 141
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.46 E-value=1.4e-11 Score=114.92 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 013411 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM 320 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 320 (443)
++......+...........+.|.++++.+|+|+.+.++..+...++..++.++. |++.||+|||+.+..+.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-g~l~dr~g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIIL-GFLVDKFGPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHH-HHHHHHhCchHHHHHHHHHHHHHH
Confidence 3445555666666666777778877888899999999999999999999999555 799999999999999999999998
Q ss_pred HHHHhhc-chhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 321 FLYSVAW-SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 321 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
+...+.+ +.+.... .++.+++.+ ..+...+++.+.+|+++|+++.++.....++|..+++.+.+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~ 152 (366)
T TIGR00886 82 LWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS 152 (366)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8888877 6665554 444566544 4456788899999999999999999988889999998888877765
No 142
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.45 E-value=1e-11 Score=116.62 Aligned_cols=148 Identities=17% Similarity=0.140 Sum_probs=120.7
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH
Q 013411 239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV 318 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 318 (443)
|.++.+.+..++..+.........+.+. +.++.++.+.++..+...+...+..++. |++.||+|||+++..+..+..+
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~~~l~~~~~-G~laDr~grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIALL-KELHYPDWSQPLLQMFFVLAYIVLAPFV-GAFADSFPKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHHHhhh-hHhhhccCCchhhHHHHHHHHH
Confidence 4566677777777765555555556554 4458888889999999999999999555 7999999999999999988887
Q ss_pred HHHHHHhhcchhHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 319 HMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
+.+......+. .....+.|++.+...|...+++.|.+|+++|++++|+.+.....+..+||.++|.+.+.
T Consensus 81 ~~~~~~~~~~~--~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 81 GCLLMLFGIHP--LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665554443 33345678889999999999999999999999999999999999999999999999986
No 143
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.44 E-value=1.9e-11 Score=114.77 Aligned_cols=131 Identities=12% Similarity=0.045 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHH
Q 013411 259 QGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAV 337 (443)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 337 (443)
...+|.+.+ .+|+++.+.+...+...++..+++++. |++.||+|||+.+..+..+.+++.+.....++.+..+. -.+
T Consensus 40 ~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~-g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 117 (394)
T PRK10213 40 VSLLTPMAQ-DLGISEGVAGQSVTVTAFVAMFASLFI-TQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC 117 (394)
T ss_pred HhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 335566554 569999999999999999999999555 79999999999999999999998888888777776666 466
Q ss_pred HHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 338 FSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
.|++.+...+...+++.|.+|+++|+++.++.....+++..++|.+.+.+.+.+
T Consensus 118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~ 171 (394)
T PRK10213 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI 171 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 788888889999999999999999999999999999999999999999998764
No 144
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2.4e-11 Score=109.80 Aligned_cols=175 Identities=14% Similarity=0.089 Sum_probs=153.3
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHH
Q 013411 240 TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVH 319 (443)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 319 (443)
.+..+.+..|......+.....+|...++ +|.|..++|...+.++.+..++.++. ..+.||+.||+++.....+..++
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~ai~ap~l-~~lt~r~~Rr~lLl~~l~lFi~~ 91 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGVALGAPLL-ALLTGRLERRRLLLGLLALFIVS 91 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHcccchHHHHHHHHHHHHHH
Confidence 45566777788888888888888888877 59999999999999999999999777 58999999999999999999999
Q ss_pred HHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCC
Q 013411 320 MFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPF 398 (443)
Q Consensus 320 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~ 398 (443)
.++..+.++.+.... =++.++..+..++...+...+.+|+++|+++.++......++..+|..++.++-|.+|.
T Consensus 92 n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW----- 166 (394)
T COG2814 92 NLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW----- 166 (394)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH-----
Confidence 999999999888777 57778999999999999999999999999999999999999999999999999998642
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhc
Q 013411 399 NFPGFSIMCIGFVSMTAFIQSIMIRV 424 (443)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (443)
...|.+.+.+.++.....+...+
T Consensus 167 ---R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 167 ---RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhCC
Confidence 44777777777777777776664
No 145
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.44 E-value=1.8e-11 Score=118.16 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=123.1
Q ss_pred ccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-cccchHHHHHHH
Q 013411 236 KSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT-VGEARLLSFGLL 314 (443)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~ 314 (443)
++++.++..+...++..+.+++...+++.|+++.+|++..+.+.............. ..+|++.|| +|||+.+..+.+
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~-~~~G~LaDr~~G~r~~~~~g~~ 96 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLV-AIGGWLGDKVLGTKRVIMLGAI 96 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchHHHHHHHHH
Confidence 345567888888888889999999999999999999999988777766554444444 456899999 599999999999
Q ss_pred HHHHHHHHHHhhcc-hhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCc--chhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 315 FGCVHMFLYSVAWS-SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNE--QGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 315 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
+..++..++.+..+ .+.... ..+.+++.+...+...++..+.+|+++ ++.+.++.+...++|..++|.+.|++.+.
T Consensus 97 ~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~ 176 (500)
T PRK09584 97 VLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK 176 (500)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988877776543 233333 455677888788888899999998653 45678888999999999999999999887
Q ss_pred h
Q 013411 391 F 391 (443)
Q Consensus 391 ~ 391 (443)
.
T Consensus 177 ~ 177 (500)
T PRK09584 177 Y 177 (500)
T ss_pred h
Confidence 4
No 146
>PRK12382 putative transporter; Provisional
Probab=99.44 E-value=1.5e-11 Score=115.83 Aligned_cols=153 Identities=13% Similarity=0.007 Sum_probs=118.6
Q ss_pred ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Q 013411 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC 317 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (443)
++.+.......++...........+|.|+++.+|.|+.+.|...+...+...+.+++. |+++||+|||+.+..+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~-G~l~Dr~g~r~~l~~~~~~~~ 92 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYA-GRLADQYGAKRSALQGMLACG 92 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhh-hHHHHhhcchHHHHHHHHHHH
Confidence 3445555555666666666666778888888889999999999999999999999555 799999999999998877766
Q ss_pred HHHHHHHh---h-----cchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHH
Q 013411 318 VHMFLYSV---A-----WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 318 ~~~~~~~~---~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (443)
++.+.... . .+.+..+. -.+.|++.+...+...+++.|.+|+++|++++|..+.....+..++|.+.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~ 172 (392)
T PRK12382 93 LAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH 172 (392)
T ss_pred HHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 65433211 1 12233333 455677777777888889999999999999999999998999999999999888
Q ss_pred Hhh
Q 013411 389 ALF 391 (443)
Q Consensus 389 ~~~ 391 (443)
+..
T Consensus 173 ~~~ 175 (392)
T PRK12382 173 SHF 175 (392)
T ss_pred hcc
Confidence 763
No 147
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.44 E-value=1.1e-11 Score=117.12 Aligned_cols=154 Identities=14% Similarity=0.026 Sum_probs=124.8
Q ss_pred cChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Q 013411 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFG 316 (443)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 316 (443)
.++++..+.+..+...+........+|.++++.+|.|+.+.|...+...++..+++++. |++.||+|||+++..+.++.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~-G~l~Dr~g~r~~l~~~~~~~ 91 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHA-GRYADTLGPKKAVVFGLCGC 91 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhh-HhHHhccCCcchHHHHHHHH
Confidence 35566677777777777777778889999988889999999999999999999999555 89999999999999998877
Q ss_pred HHHHHHHHhh---cc-----hhHHH-HHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHH
Q 013411 317 CVHMFLYSVA---WS-----SWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL 387 (443)
Q Consensus 317 ~~~~~~~~~~---~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 387 (443)
+++.+..... .+ .+..+ .-++.|++.+...+...++..|.+|+++|+++.++.......|..++|.+.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l 171 (399)
T PRK05122 92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL 171 (399)
T ss_pred HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence 7665443332 21 11222 245667888888888889999999999999999999998899999999999998
Q ss_pred HHhh
Q 013411 388 TALF 391 (443)
Q Consensus 388 ~~~~ 391 (443)
.+..
T Consensus 172 ~~~~ 175 (399)
T PRK05122 172 YHWG 175 (399)
T ss_pred HHcc
Confidence 8764
No 148
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.44 E-value=2e-11 Score=115.45 Aligned_cols=140 Identities=10% Similarity=0.003 Sum_probs=117.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcc
Q 013411 249 FLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS 328 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (443)
++............| .+++.+|++..+.++..+...++..+++++. |++.||+|||+.+..+.++..++..+..+.++
T Consensus 18 ~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~-g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
T TIGR02332 18 IFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPS-NIMLAIIGARRWIAGIMVLWGIASTATMFATG 95 (412)
T ss_pred HHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhH-HHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333334444444 6777889999999999999999999999555 79999999999999999999999988888877
Q ss_pred hhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 329 SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 329 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
.+..+. -.+.|++.+...|....++.|.+|+++|+++.|+.+....+|..+++.+.+++.+.
T Consensus 96 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (412)
T TIGR02332 96 PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL 158 (412)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 766555 56678888888899999999999999999999999999999999999999988753
No 149
>PRK10504 putative transporter; Provisional
Probab=99.43 E-value=1.6e-11 Score=118.52 Aligned_cols=174 Identities=11% Similarity=0.032 Sum_probs=136.4
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH
Q 013411 239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV 318 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 318 (443)
+.++......++...........+|.+.++ +|.++.+.++..+...++..++.+ ..|++.||+|||+.+..+..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~r~~~~~~~~~~~~ 87 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLP-ASGWLADRVGVRNIFFTAIVLFTL 87 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchHHHHHHHHHHHHH
Confidence 345666677777777777788888988876 699999999998888888888884 558999999999999988888888
Q ss_pred HHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCC
Q 013411 319 HMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAP 397 (443)
Q Consensus 319 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 397 (443)
+.+.....++.+..+. ..+.|++.+...+...+++.|.+|+++|+++.|+.+....+|..++|.+.|.+.+..+
T Consensus 88 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g----- 162 (471)
T PRK10504 88 GSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS----- 162 (471)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-----
Confidence 8777777666655544 5666888888889999999999999999999999999999999999999999988642
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHh
Q 013411 398 FNFPGFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (443)
| ...+.+......+........
T Consensus 163 --w-~~~f~~~~~~~~l~~~~~~~~ 184 (471)
T PRK10504 163 --W-HWIFLINIPVGIIGAIATLML 184 (471)
T ss_pred --H-HHHHHHHHHHHHHHHHHHHHh
Confidence 1 234454444444444444433
No 150
>PRK03545 putative arabinose transporter; Provisional
Probab=99.43 E-value=2e-11 Score=114.78 Aligned_cols=150 Identities=12% Similarity=0.124 Sum_probs=120.8
Q ss_pred HHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHH
Q 013411 262 MMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSI 340 (443)
Q Consensus 262 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 340 (443)
.|. +.+.+|.++.+.++..+...++..+++++. |.+.||+|||+.+..+..+..++.+...+.++.+.... -.+.|+
T Consensus 32 ~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~ 109 (390)
T PRK03545 32 LSD-IAQSFHMQTAQVGLMLTIYAWVVALMSLPL-MLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAF 109 (390)
T ss_pred hHH-HHhHcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 454 455679999999999999999999988566 79999999999999999999999888888888776655 455677
Q ss_pred hhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHH
Q 013411 341 LSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSI 420 (443)
Q Consensus 341 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (443)
+.+...+...+++.+.+|+++|++++|+......+|..++|.+.+.+.+..+ | ...+.+.+++.++......
T Consensus 110 ~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-------w-~~~f~~~~~~~~l~~~~~~ 181 (390)
T PRK03545 110 AHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-------W-RTTFLAIGGGALITLLLLI 181 (390)
T ss_pred HHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-------H-HHHHHHHHHHHHHHHHHHH
Confidence 7777788899999999999999999999999999999999999999887642 1 3355555555555444443
Q ss_pred H
Q 013411 421 M 421 (443)
Q Consensus 421 ~ 421 (443)
.
T Consensus 182 ~ 182 (390)
T PRK03545 182 K 182 (390)
T ss_pred H
Confidence 3
No 151
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=99.42 E-value=2.9e-12 Score=115.15 Aligned_cols=369 Identities=17% Similarity=0.135 Sum_probs=210.0
Q ss_pred cchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccc----ccccchhh
Q 013411 6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD----KYGRKALL 81 (443)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~Grr~~~ 81 (443)
.+..+....+-..+++..-...+++|..+ ++++..+.+.+--...+...+.+|+.|..+| ||||||.+
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~--------lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPf 104 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTPYLQS--------LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPF 104 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHH--------cCCCcccccccccccccccceecccccccccccccccccccch
Confidence 34444555566667777777778888665 4555566778888888889999999999999 68998877
Q ss_pred HH-HHHHhHHHHHHHHhccCCc--------------hhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchh-HHHH
Q 013411 82 TV-PITLSIIPLAILAYSRSRN--------------FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRAS-VFGI 145 (443)
Q Consensus 82 ~~-~~~~~~i~~~~~~~~~~~~--------------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~ 145 (443)
+. +....+++.++..++.+.. ....++++-.+.=+ ..-.....+.+++.|.+.++++.+ +++.
T Consensus 105 I~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~-A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~ 183 (498)
T KOG0637|consen 105 ILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDV-ANNTLQGPCRALLADLARGDAKKTRANSV 183 (498)
T ss_pred HHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHh-hhhhhhhhHHHHHHHhccChhhhhccchh
Confidence 65 5566677777777765410 12234444444554 555667788999999998877777 9999
Q ss_pred HHHHhhhhhhhhhhhhhhhchhhH--HHHHHHHHHHHHHHHHHh-------ccCCCC--ccccccccccchhhhhhhhhh
Q 013411 146 FSGIVSGAFVCGTISARFISTSAA--FQAATAGSIISAVYMRIF-------LPESVR--DEDLYTPILSSKAEISASCEE 214 (443)
Q Consensus 146 ~~~~~~~g~~~g~~l~~~~~w~~~--f~~~~~~~~~~~~~~~~~-------~~e~~~--~~~~~~~~~~~~~~~~~~~~~ 214 (443)
+.....+|..+|..++.+.+|+-. |.....+-+.+..+-..+ .+++-. ....++.... +. .+
T Consensus 184 f~~f~avGnvLGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~--~~--~~--- 256 (498)
T KOG0637|consen 184 FSFFMAVGNVLGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSP--KG--TT--- 256 (498)
T ss_pred HHHHHHhcceeeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCC--Cc--cc---
Confidence 999999999999999988887532 322222222211111111 111110 0000000000 00 00
Q ss_pred hhhhhhhcccCCchhHHH-hhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHH-HHcCcChhh----------------
Q 013411 215 STKKLQVFKRLPSIDDMV-HLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLK-AKFHFNKNQ---------------- 276 (443)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~---------------- 276 (443)
.+.+..+.....+.+ .....+|.++.+++...+.+++...+..+.+.++- +.|+-++..
T Consensus 257 ---~~~~~~~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~ 333 (498)
T KOG0637|consen 257 ---ARSKSSKLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRM 333 (498)
T ss_pred ---ccccccCcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhcccc
Confidence 000000000111111 11234677888888888888887777666666553 344333211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhh-----------
Q 013411 277 FADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVF----------- 344 (443)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----------- 344 (443)
-.+=+.++.+...+.+... .++.||+|-|+.+..+.....++..+.....+.+.... ....|...+.
T Consensus 334 G~~GL~ins~~lgi~S~~~-~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~ 412 (498)
T KOG0637|consen 334 GCLGLMLNSIVLGIYSLLV-EKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALAL 412 (498)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHH
Confidence 1122445666666777555 68999999665555555444444444444443322222 1111211111
Q ss_pred ----------hhhHHHHHHHhcCCC--CcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcC
Q 013411 345 ----------SHPCLRTIVSKQVAS--NEQGKAQGCISGICSFANLVSPLAFSPLTALFLSD 394 (443)
Q Consensus 345 ----------~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~ 394 (443)
.+.+.++..+..... .-+|.-.|+.|....+.+++.....|++.+..++.
T Consensus 413 y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~ 474 (498)
T KOG0637|consen 413 YAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGG 474 (498)
T ss_pred HHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCc
Confidence 111122222211111 23466677788888888999988889999987654
No 152
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=99.42 E-value=8e-12 Score=114.45 Aligned_cols=182 Identities=14% Similarity=0.175 Sum_probs=137.1
Q ss_pred hhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccch
Q 013411 228 IDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEAR 307 (443)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 307 (443)
+.+..+.+ .++....++....+.++......+++--++++. |-.+...|......-.+.++.- +..+++.+|+|+.+
T Consensus 361 ~a~~~~~~-~s~~~llff~~av~mG~g~~lv~tFLfWHled~-~~~~~LfGv~~a~~~~gEI~~~-ffs~klI~kiGHv~ 437 (618)
T KOG3762|consen 361 LADVGKVF-ASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDL-GGIKTLFGVVSALCHAGEILFY-FFSFKLIEKIGHVN 437 (618)
T ss_pred HHHHHHHh-cCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeehhhhhccchHHHH-HHHHHHHHHhcccc
Confidence 34443444 344444455556666666666666666666664 6666667877777777777777 55579999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHH-HHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHH-HHHHHHhHHhHH
Q 013411 308 LLSFGLLFGCVHMFLYSVAWSSWVPYAA-AVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGIC-SFANLVSPLAFS 385 (443)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~-~~g~~~~~~~~g 385 (443)
++..++.+..+-++.+....++|..+.. ++-++..+..+.+.-++++...||+.+.+++++..... .+|-.+|.+++|
T Consensus 438 v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG 517 (618)
T KOG3762|consen 438 VMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGG 517 (618)
T ss_pred eeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhh
Confidence 9999999999999999999999988774 55599999999999999999999999999999997665 489999999999
Q ss_pred HHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHH
Q 013411 386 PLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSI 420 (443)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (443)
.+.+.++. ...|..+++.+++.+.+..
T Consensus 518 ~~v~~fg~--------~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 518 FVVERFGA--------RTTFRIFGIACLVTLALFI 544 (618)
T ss_pred hhheeehh--------HHHHHHHHHHHHHHHHHHH
Confidence 99988542 3345555555554444443
No 153
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.41 E-value=5.2e-13 Score=127.73 Aligned_cols=164 Identities=13% Similarity=0.114 Sum_probs=125.4
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccccc--ccchhhHH-
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY--GRKALLTV- 83 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~--Grr~~~~~- 83 (443)
++......++..++.......+|.+.++ .+.+..+.+++.++..++..+++++.|+++||. ++|+...+
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 314 (455)
T TIGR00892 243 FLVYLSGNVIMFLGFFAPIIFLVPYAKD--------KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFS 314 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHH
Confidence 3344444555555555555566777543 466777889999999999999999999999984 33433333
Q ss_pred -HHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhh
Q 013411 84 -PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR 162 (443)
Q Consensus 84 -~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~ 162 (443)
+.+..+++.++....++ ++.+++.+++.|+ +.+...+...+++.|.+|++++++.+++.+....+|..+||.+++
T Consensus 315 ~~~~~~~l~~ll~~~~~~---~~~~~i~~~~~G~-~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G 390 (455)
T TIGR00892 315 FALLFNGLTHLLCALAGD---YTGLVIYCIFFGL-SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAG 390 (455)
T ss_pred HHHHHHHHHHHHHHHhch---HHHHHHHHHHHHH-HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccccee
Confidence 33444455556666777 8888999999999 888888899999999999999999999999999999999999988
Q ss_pred hh-----chhhHHHHHHHHHHHHHH
Q 013411 163 FI-----STSAAFQAATAGSIISAV 182 (443)
Q Consensus 163 ~~-----~w~~~f~~~~~~~~~~~~ 182 (443)
.+ +|++.|++.+++.++..+
T Consensus 391 ~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 391 RLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred eeehhcCCcchHHHHhhHHHHHHHH
Confidence 65 488899888876665443
No 154
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.41 E-value=3.2e-11 Score=113.53 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=129.1
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH
Q 013411 239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV 318 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 318 (443)
|.+.......+............+|.+.++ +|.++.+.+...+...++..++.++. |+++||+|||+.+..+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~-G~l~Dr~g~r~~l~~~~~~~~i 80 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFA-GKIADRSGRKPVAIPGAALFII 80 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhH-hHHHHHhCChHHHHHHHHHHHH
Confidence 334444445555555555555566666655 69999999999999999999998555 8999999999999999999888
Q ss_pred HHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCC
Q 013411 319 HMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAP 397 (443)
Q Consensus 319 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 397 (443)
+.......++.+.... ..+.+++.+...+...+++.|.+|+++|+++.+..+....++..++|.+.+.+.+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g----- 155 (392)
T PRK10473 81 ASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP----- 155 (392)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-----
Confidence 8888877776655444 4556777777888899999999999999999999999999999999999888776531
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHh
Q 013411 398 FNFPGFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (443)
+ ...+.+.+++.++........
T Consensus 156 --~-~~~~~~~~~~~~i~~~~~~~~ 177 (392)
T PRK10473 156 --W-QSLFYTMAAMGILVLLLSLFI 177 (392)
T ss_pred --h-HHHHHHHHHHHHHHHHHHHHH
Confidence 1 234445554444444443333
No 155
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.41 E-value=3.4e-11 Score=119.55 Aligned_cols=127 Identities=9% Similarity=0.017 Sum_probs=108.9
Q ss_pred HHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhh
Q 013411 264 YYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILS 342 (443)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 342 (443)
+.+++.+|.+..+.+++.+...++.+++.++ .|+++||+|||+.++++.++.+++.++..+.++.+.+++ -++.|++.
T Consensus 191 p~i~~~~gls~~~~g~l~s~~~lG~iiG~li-~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~ 269 (742)
T TIGR01299 191 PSAEKDLCIPDSGKGMLGLIVYLGMMVGAFF-WGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGI 269 (742)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445557999999999999999999999955 489999999999999999888888888877777665555 56678888
Q ss_pred hhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 343 VFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
+...+...+++.|.+|++.||+..++.+....+|.++++.+...+...+
T Consensus 270 g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~ 318 (742)
T TIGR01299 270 GGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY 318 (742)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999999998887776653
No 156
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.41 E-value=6.2e-11 Score=114.12 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=111.2
Q ss_pred HHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhh
Q 013411 265 YLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSV 343 (443)
Q Consensus 265 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 343 (443)
++++.+|++..+.+...+...++..++.++ .|++.||+|||+.+..+.++.+++.++..+..+.+..+. .++.|++.+
T Consensus 61 ~l~~~~gls~~~~g~~~~~~~~~~~~~~~~-~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~ 139 (476)
T PLN00028 61 IIRDNLNLTKSDIGNAGIASVSGSIFSRLA-MGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLA 139 (476)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 445667999999999888888888888844 489999999999999998888888887777777665544 344566555
Q ss_pred hhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcC--CCCCccchhHHHHHHHHHHHHHHHHHH
Q 013411 344 FSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSD--RAPFNFPGFSIMCIGFVSMTAFIQSIM 421 (443)
Q Consensus 344 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (443)
.. .....++.+.+|+++||++.|+.+...++|..+++.+.+.+.+..... ....+| ...+.+.+++.++..+..+.
T Consensus 140 ~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gW-r~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 140 TF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAW-RIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred hh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 43 345567889999999999999999988889988888877665432211 001122 33555555555555444444
Q ss_pred hh
Q 013411 422 IR 423 (443)
Q Consensus 422 ~~ 423 (443)
..
T Consensus 218 ~~ 219 (476)
T PLN00028 218 LG 219 (476)
T ss_pred Hc
Confidence 43
No 157
>PRK03699 putative transporter; Provisional
Probab=99.41 E-value=3.8e-11 Score=113.07 Aligned_cols=147 Identities=13% Similarity=0.048 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Q 013411 242 SQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMF 321 (443)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (443)
+......++...........+|.+.+ .+|+|+.+.+...+...++..++.+ ..|++.||+|||+.+..+..+..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~g~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~i~~~-~~g~l~dr~g~r~~~~~~~~~~~i~~~ 87 (394)
T PRK03699 10 WISFLSYALTGALVIVTGMVMGPIAE-YFNLPVSSMSNTFTFLNAGILISIF-LNAWLMEIIPLKRQLIFGFALMILAVA 87 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555666554 5799999999999999999999994 558999999999999999988888888
Q ss_pred HHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 322 LYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 322 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
+..+.++.+.... ..+.+++.+...+...+++.|.+|+++|+++.+..+....+++.++|.+.+.+.+.
T Consensus 88 l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 157 (394)
T PRK03699 88 GLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR 157 (394)
T ss_pred HHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8887777665544 45567777777888889999999999999999999888889999999998887654
No 158
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.41 E-value=1e-11 Score=116.94 Aligned_cols=149 Identities=11% Similarity=0.088 Sum_probs=121.3
Q ss_pred HHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHh
Q 013411 263 MYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSIL 341 (443)
Q Consensus 263 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 341 (443)
.+++++.+|.++.+.++..+...++..++.++. |++.||+|||+.+..+.++..++..+....++.+.... ..+.|++
T Consensus 17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~-g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 95 (399)
T TIGR00893 17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPG-GWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAA 95 (399)
T ss_pred HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhH-HHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 344666789999999999999999999999555 79999999999999999998888888888777666655 5667888
Q ss_pred hhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHH
Q 013411 342 SVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSI 420 (443)
Q Consensus 342 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (443)
.+...+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+ + ...+.+.++..++......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-------~-~~~~~~~~~~~~~~~~~~~ 166 (399)
T TIGR00893 96 EAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-------W-QWAFIIEGVLGIIWGVLWL 166 (399)
T ss_pred HHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-------c-hHHHHHHHHHHHHHHHHhh
Confidence 888899999999999999999999999999999999999999998887642 1 2344555554444444333
No 159
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.41 E-value=3.1e-11 Score=113.11 Aligned_cols=172 Identities=11% Similarity=0.105 Sum_probs=134.8
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH
Q 013411 239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV 318 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 318 (443)
+.++......+............+|.+.+ .+|.+..+.++..+...++..+++++. |++.||+|||+.+..+..+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~-g~l~dr~g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAH-DVGISIPAAGHMISYYALGVVVGAPII-ALFSSRYSLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHH-HcCCCHHHHhHHHHHHHHHHHHHHHHH-HHHHccCccHHHHHHHHHHHHH
Confidence 34555666666666666666667776654 569999999999999999999999555 7999999999999999999999
Q ss_pred HHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCC
Q 013411 319 HMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAP 397 (443)
Q Consensus 319 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 397 (443)
+.++....++.+..+. ..+.|++.+...+.....+.+.+|+++|+++++.......++..++|.+.+.+.+..+
T Consensus 81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g----- 155 (382)
T PRK10091 81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS----- 155 (382)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-----
Confidence 9988888888776665 4566787777778888889999999999999999999999999999999998877531
Q ss_pred CccchhHHHHHHHHHHHHHHHHH
Q 013411 398 FNFPGFSIMCIGFVSMTAFIQSI 420 (443)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~ 420 (443)
+ ...+.+.++..++..+..+
T Consensus 156 --w-r~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 156 --W-RYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred --H-HHHHHHHHHHHHHHHHHHH
Confidence 1 2345555555444444333
No 160
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.41 E-value=3.5e-11 Score=116.55 Aligned_cols=173 Identities=14% Similarity=0.059 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 013411 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM 320 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 320 (443)
+....+..++...-....+...|.+.++ +|.+..+.++..+.+.++.....++. |+++||+|||+.+..+..+..++.
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~-G~l~D~~Grk~~l~~~~~~~~~~~ 85 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPM-GALGDRIGFKRLLMLGGTLFGLAS 85 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHH
Confidence 3445555666666666677777877655 69999999999999999988888555 799999999999999999999999
Q ss_pred HHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcC-CCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCC
Q 013411 321 FLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQV-ASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPF 398 (443)
Q Consensus 321 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~ 398 (443)
+.....++.+..+. -.+.|++.+...+.....+.+.+ |+++|++++|+......+|..+||.+.|.+.++.+
T Consensus 86 ~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g------ 159 (495)
T PRK14995 86 LAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY------ 159 (495)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------
Confidence 99888888777666 45678888888888877776665 67899999999999999999999999999988742
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 399 NFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
| ...|++...+.++.........
T Consensus 160 -w-r~~f~i~~~~~~~~~~l~~~~l 182 (495)
T PRK14995 160 -W-GSVFLINVPIVLVVMGLTARYV 182 (495)
T ss_pred -h-HHHHHHHHHHHHHHHHHHHHhC
Confidence 1 2345555555555554444444
No 161
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.41 E-value=1.1e-12 Score=122.73 Aligned_cols=136 Identities=20% Similarity=0.187 Sum_probs=113.4
Q ss_pred hhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchh
Q 013411 43 CSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSI 122 (443)
Q Consensus 43 ~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 122 (443)
++.+..+.+++.+...++..+++++.|+++||+|||+.+.++..+.+++.++..+.++.. ...++...++.|+ +.+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~g~~ 312 (377)
T TIGR00890 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLN-DVLFLATVALVFF-TWGGT 312 (377)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccch-hHHHHHHHHHHHH-Hhccc
Confidence 455666788999999999999999999999999999999999998888888777776521 2334566778887 77777
Q ss_pred hhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----chhhHHHHHHHHHHHH
Q 013411 123 HCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIIS 180 (443)
Q Consensus 123 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~~~ 180 (443)
.+....++.|.+|+++|+++.++.+....+|..++|.+.+.+ +|++.|.+.+++.++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 313 ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 777788999999999999999999999999999999887764 7899998887766553
No 162
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.41 E-value=2.5e-11 Score=113.81 Aligned_cols=151 Identities=13% Similarity=0.043 Sum_probs=129.0
Q ss_pred ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Q 013411 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC 317 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (443)
++.++.++...++...........+|.|.++ +|.|..+.|...+...++..+++++. |++.||+|||+.+..+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~~~~-g~l~dr~g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGTLLA-GYVIKRIGFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777778888888888899999886 59999999999999999999999555 799999999999999999999
Q ss_pred HHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 318 VHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 318 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
++.....+.++.+.... .++.|++.+...+...+...+..|+++|+++++..+....+|..++|.+.+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 83 AGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 88888888777666555 45567788878888888888889999999999999999999999999999988765
No 163
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.40 E-value=2e-12 Score=119.76 Aligned_cols=166 Identities=22% Similarity=0.284 Sum_probs=142.9
Q ss_pred hhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccch-hhHHHHH
Q 013411 8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKA-LLTVPIT 86 (443)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~-~~~~~~~ 86 (443)
+...+..+.............|.+.++. .+.+..+.++..+...++..++.++.|++.||+|||+ .+..+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
T cd06174 178 LLLALAFFLLSFGYYGLLTYLPLYLQEV-------LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLL 250 (352)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3445555666666667777777776652 3556678899999999999999999999999999999 9999999
Q ss_pred HhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh--
Q 013411 87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-- 164 (443)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-- 164 (443)
+..++.+.....++ .+.+.+..++.|+ +.+...+...+++.|..|+++|++.++..+....+|..++|.+.+.+
T Consensus 251 ~~~i~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 251 LAALGLLLLALAPS---LALLLVALLLLGF-GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred HHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999888 8899999999999 98999999999999999999999999999999999999999988765
Q ss_pred --chhhHHHHHHHHHHHHHHHH
Q 013411 165 --STSAAFQAATAGSIISAVYM 184 (443)
Q Consensus 165 --~w~~~f~~~~~~~~~~~~~~ 184 (443)
+|+..|.+.+++.++..+..
T Consensus 327 ~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 327 TGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred ccCcchHHHHHHHHHHHHHHHh
Confidence 78999999888877765543
No 164
>PRK11043 putative transporter; Provisional
Probab=99.40 E-value=4.7e-11 Score=112.79 Aligned_cols=147 Identities=14% Similarity=0.062 Sum_probs=116.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHH--HHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Q 013411 244 AAIVAFLSNLADAGLQGSMMYY--LKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMF 321 (443)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (443)
+....+.....+.....+.|.+ +++.+|.++.+.+...+...++..++.++. |++.||+|||+.+..+..+..++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~-g~l~dr~g~r~~~~~~~~~~~~~~~ 86 (401)
T PRK11043 8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLW-GPLSDRYGRKPVLLAGLSLFALGSL 86 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcCCcHHHHHHHHHHHHHHH
Confidence 3344444444445555566654 456679999999999999999999999555 7999999999999999888888888
Q ss_pred HHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 322 LYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 322 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
.....++.+.... ..+.|++.+...+...+++.|.+|++++++..+..+....++..++|.+.+.+.+..
T Consensus 87 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~ 157 (401)
T PRK11043 87 GMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF 157 (401)
T ss_pred HHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777777665554 445566666667777888999999999999999999888999999999999998764
No 165
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.40 E-value=2.6e-11 Score=114.75 Aligned_cols=149 Identities=13% Similarity=0.061 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 013411 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM 320 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 320 (443)
+....+..+...+.........|.+ ++.+|.++.+.++..+...++..++.++. |++.||+|||+.+..+.++..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-G~l~Dr~g~r~~~~~~~~~~~~~~ 91 (405)
T TIGR00891 14 FSAAWLGWLLDAFDFFLVALVLAEV-AGEFGLTTVDAASLISAALISRWFGALMF-GLWGDRYGRRLPMVTSIVLFSAGT 91 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCChhhHHHHHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHH
Confidence 3344445555555555555555554 55679999999999999999999999555 799999999999999999988888
Q ss_pred HHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 321 FLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 321 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
+...+.++.+..+. .++.|++.+...+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..
T Consensus 92 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 163 (405)
T TIGR00891 92 LACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW 163 (405)
T ss_pred HHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888777666555 556688888888999999999999999999999999999999999999999888764
No 166
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.40 E-value=3.7e-12 Score=119.20 Aligned_cols=171 Identities=16% Similarity=0.243 Sum_probs=126.9
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHH
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT 86 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~ 86 (443)
.+.+....++...........+|.+..+ +++.+..+.|++.+.......++.++.|++.||+|||+.+..+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~ 273 (375)
T TIGR00899 201 TRLLFVACTLMWGCNILYIINMPLLIIH-------ELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAAL 273 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHH
Confidence 3333333444333334444455666544 245566678888888777788889999999999999999888877
Q ss_pred HhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh--
Q 013411 87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-- 164 (443)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-- 164 (443)
+..+......+.++ .+.+.+.+++.|+ +.+...+....++.|..|+ +|++++++.+....+|..++|.+++.+
T Consensus 274 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~ 348 (375)
T TIGR00899 274 AGVAFYTGLAADNS---LWALLMLQLLNAI-FIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE 348 (375)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666555566666 7778888999998 8788888888899998875 567999999999999999999888764
Q ss_pred --chhhHHHHHHHHHHHHHHHHHHhccC
Q 013411 165 --STSAAFQAATAGSIISAVYMRIFLPE 190 (443)
Q Consensus 165 --~w~~~f~~~~~~~~~~~~~~~~~~~e 190 (443)
+|+..|++.+++.++..+.. .++||
T Consensus 349 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 375 (375)
T TIGR00899 349 RWSYHAVYWFAIVMLIVALFCL-LLIKD 375 (375)
T ss_pred hccchhHHHHHHHHHHHHHHHH-heecC
Confidence 78999998888776655544 44443
No 167
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.40 E-value=3.6e-11 Score=113.85 Aligned_cols=143 Identities=15% Similarity=0.077 Sum_probs=115.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHh
Q 013411 246 IVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSV 325 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (443)
...++............|.+.+ .+|.++.+.++..+...++..++.++. |++.||+|||+.+..+..+..++.+....
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~-g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 99 (406)
T PRK11551 22 LVALLEGLDLQSAGVAAPRMAQ-EFGLDVAQMGWAFSAGILGLLPGALLG-GRLADRIGRKRILIVSVALFGLFSLATAQ 99 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 3444444444445555565554 479999999999999999999999555 79999999999999998888888777777
Q ss_pred hcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 326 AWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 326 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
.++.+.... ..+.|++.+...+...+++.|.+|+++|++++++.+....+|..+++.+.+.+.+.
T Consensus 100 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 165 (406)
T PRK11551 100 AWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD 165 (406)
T ss_pred hccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 777665554 55668888888899999999999999999999999999999999999888766554
No 168
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.39 E-value=2.6e-11 Score=117.63 Aligned_cols=146 Identities=13% Similarity=0.016 Sum_probs=121.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Q 013411 244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY 323 (443)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 323 (443)
..+..++............|.+.++ +|.++.+.++..+...++..++.++. |++.||+|||+.+..+..+..++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~-g~l~dr~g~r~~~~~~~~~~~~~~~~~ 84 (485)
T TIGR00711 7 LMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLT-GWLAKRFGTRRLFLISTFAFTLGSLLC 84 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhH-HHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 3444455555555556566666554 69999999999999999999999555 799999999999999999999998888
Q ss_pred HhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 324 SVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 324 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
...++.+..+. ..+.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+++.++.
T Consensus 85 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 153 (485)
T TIGR00711 85 GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY 153 (485)
T ss_pred hCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc
Confidence 88877666555 556688888888999999999999999999999999999999999999999998764
No 169
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.39 E-value=5.9e-11 Score=112.03 Aligned_cols=152 Identities=19% Similarity=0.151 Sum_probs=117.9
Q ss_pred ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Q 013411 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC 317 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (443)
++.+....+..++..........+.+.+.++ +|.++.+.+...+...++..++.++. |++.||+|||+.+..+..+.+
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~-g~l~dr~g~k~~l~~~~~~~~ 89 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISAWIS-GVVAEIIGPLKTMMIGLLLWC 89 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhHHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHHHHH-HHHHHHcCcHHHHHHHHHHHH
Confidence 4456666777777777766677788888865 69999999999999999999999555 799999999999999888888
Q ss_pred HHHHHHH---hh-cchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHH-HHhHHhHHHHHHhh
Q 013411 318 VHMFLYS---VA-WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFAN-LVSPLAFSPLTALF 391 (443)
Q Consensus 318 ~~~~~~~---~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~~~~~~~g~l~~~~ 391 (443)
++..... .. .+.+..+. ..+.|++.+...+...+.+.+.+|+++|++++|+.+....+|. .++|.+.+.+.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~ 169 (402)
T TIGR00897 90 VGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF 169 (402)
T ss_pred HHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7765442 21 23333333 3444666666667777888899999999999999999999986 57898888887764
No 170
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.38 E-value=7.1e-11 Score=111.30 Aligned_cols=130 Identities=17% Similarity=0.114 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHH
Q 013411 259 QGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAV 337 (443)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 337 (443)
...+|.+. +.+|.|+.+.+...+...++..++.++. |+++||+|||+.+..+.....++.+.....++.+.... ..+
T Consensus 28 ~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~-G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 105 (394)
T PRK11652 28 VPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFY-GPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAI 105 (394)
T ss_pred hccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhh-hhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 33455555 4469999999999999999999999555 79999999999999999888888887777766655544 455
Q ss_pred HHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 338 FSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
.+++.+...+....+..|.+++++++++.+..+....++..++|.+.+.+.+.
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 158 (394)
T PRK11652 106 QGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL 158 (394)
T ss_pred HHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57777766777788889999999999999999999999999999999988775
No 171
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=99.37 E-value=9.2e-10 Score=102.02 Aligned_cols=365 Identities=16% Similarity=0.148 Sum_probs=204.3
Q ss_pred CCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHH
Q 013411 4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV 83 (443)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~ 83 (443)
||..+.++...++...+..+..-..+.++.+..+.+ -...+...-.-.+..++.++..|.+.||..|+++...
T Consensus 1 ~~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~s-------Ll~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~ 73 (432)
T PF06963_consen 1 KRALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGS-------LLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRT 73 (432)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------cHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHH
Confidence 456678899999999999888888888887743211 1223344445566778889999999999999998777
Q ss_pred HHHHhHHHHHH----HH--hcc-C-----CchhHHHHHHHHhhhhhccchhh-hhhhhhhhcCC------CCCcchhHHH
Q 013411 84 PITLSIIPLAI----LA--YSR-S-----RNFFYAYYVLRTLTAMVCEGSIH-CLSLAYVADNV------PPGRRASVFG 144 (443)
Q Consensus 84 ~~~~~~i~~~~----~~--~~~-~-----~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~i~~~~------~~~~r~~~~~ 144 (443)
+.+.--++..+ .. +.. + ......+++.-.+.|. ..-... ....+.=.||. +++++.+.++
T Consensus 74 ~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~-i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA 152 (432)
T PF06963_consen 74 SLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGA-IERLASIANTIAVERDWVVVIAGGDPGALARMNA 152 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHH-HHHHHHhhhhheeccchhhhhcCCChhhHHHHHH
Confidence 65544332222 11 111 1 1112222333233332 111111 11122223443 3455667777
Q ss_pred HHHHHhhhhhhhhhhhhhhh----chhhHHHHHHHHHHHHHHHHHHhc----cCCCCccccccccccchh-hhh---hhh
Q 013411 145 IFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIFL----PESVRDEDLYTPILSSKA-EIS---ASC 212 (443)
Q Consensus 145 ~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~----~e~~~~~~~~~~~~~~~~-~~~---~~~ 212 (443)
...-.-.+..+++|++.+.+ +.+....+.++..++..++=.+++ ...|+-+++++..+...+ +.. ++.
T Consensus 153 ~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
T PF06963_consen 153 TMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESS 232 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccccccccccccc
Confidence 77767777888888887765 455555555555555544322222 222221111110000000 000 000
Q ss_pred hhh----hhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHH
Q 013411 213 EES----TKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAG 288 (443)
Q Consensus 213 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 288 (443)
... ...+...+....|+.++ +++.+...+...+++ +...++...+..|+... |+++...|.+-....+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~w~~Y~----~q~vflas~alalLY-~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~G 306 (432)
T PF06963_consen 233 SDPSILKRLWNPLRTIIRGWRTYF----RQPVFLASFALALLY-FTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFG 306 (432)
T ss_pred chhhHHHHHHHHHHHHhccHHHHH----hCHHHHHHHHHHHHH-HHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Confidence 000 00011111123344433 566555444444433 34556677788899887 999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH---HHhhcc-h--hHHHHHHHHHH-----hhhhhhhHHHHHHHhcC
Q 013411 289 TISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFL---YSVAWS-S--WVPYAAAVFSI-----LSVFSHPCLRTIVSKQV 357 (443)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 357 (443)
+.+. +..+++.+|+|..+.-..+......+..+ ..+.+. . ......++.++ |.=..-....-+++|.+
T Consensus 307 l~gT-~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V 385 (432)
T PF06963_consen 307 LLGT-WVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENV 385 (432)
T ss_pred HHHH-HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccC
Confidence 9998 55589999999887766665543333221 112222 1 11111222222 22234467788899999
Q ss_pred CCCcchhHHhHHhHHHHHHHHHhHHh
Q 013411 358 ASNEQGKAQGCISGICSFANLVSPLA 383 (443)
Q Consensus 358 p~~~~g~~~g~~~~~~~~g~~~~~~~ 383 (443)
|+++||+..|+-+..+++...+.-.+
T Consensus 386 ~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 386 PESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred CHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988876655443
No 172
>TIGR00895 2A0115 benzoate transport.
Probab=99.37 E-value=2.8e-11 Score=114.14 Aligned_cols=135 Identities=19% Similarity=0.121 Sum_probs=112.5
Q ss_pred hhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 013411 255 DAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA 334 (443)
Q Consensus 255 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (443)
........|.+. +.+|.++.+.+++.+...++..++.++. +++.||+|||+.+..+..+..++.++....++.+....
T Consensus 33 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (398)
T TIGR00895 33 LAAMGFAAPAIS-AEWGLDPVQLGFLFSAGLIGMAFGALFF-GPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLI 110 (398)
T ss_pred HHHHHhhHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHHHh-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 333344445444 4579999999999999999999999555 79999999999999999988888888877777665554
Q ss_pred -HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 335 -AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 335 -~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
..+.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 168 (398)
T TIGR00895 111 LRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF 168 (398)
T ss_pred HHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc
Confidence 556678888889999999999999999999999999999999999999999998764
No 173
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.37 E-value=1.2e-10 Score=109.14 Aligned_cols=148 Identities=14% Similarity=0.113 Sum_probs=112.1
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH
Q 013411 239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV 318 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 318 (443)
|.++...+................+.+-++.+|+|+.+.+++.++..+...+.+++. |++.||+|.|+++..+..+..+
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~-G~l~Dr~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPY-SFMVPIFGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCChHHHHHHHHHHHH
Confidence 444444444444444444444444444454689999999999999999999998666 7999999999999999999988
Q ss_pred HHHHHHhh-----cchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHH
Q 013411 319 HMFLYSVA-----WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 319 ~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (443)
..+...+. ++.+..++ ..+.|++ +..++.....+++.+|+++||+++|+....+++|..+++.+.+.+.
T Consensus 113 ~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 113 PCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888765 45555444 5556775 6678889999999999999999999998777788877777666544
No 174
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.37 E-value=8.7e-11 Score=111.16 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HH
Q 013411 258 LQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AA 336 (443)
Q Consensus 258 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 336 (443)
+...+|.+. +.+|.++.+.+...+...++..++.++. |.+.||+|||+.+..+.....++.......++.+..+. ..
T Consensus 32 ~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~-G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (406)
T PRK15402 32 IQPGMLAVV-EDFNAGAEWVPTSMTAYLAGGMFLQWLL-GPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRF 109 (406)
T ss_pred HhcchHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 333445444 5579999999999999999999998555 79999999999999999888888888777777665554 44
Q ss_pred HHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHH
Q 013411 337 VFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAF 416 (443)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (443)
+.|.+.+...+...+.+.|.+|+++|+++.++......++..++|.+.+.+.+..+ + ...+.+.+++.++..
T Consensus 110 l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-------w-~~~~~~~~~~~~~~~ 181 (406)
T PRK15402 110 LQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-------W-RGMFVLFAALAALSF 181 (406)
T ss_pred HHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-------c-cHHHHHHHHHHHHHH
Confidence 55777777778888999999999999999999988888899999999998887632 1 234455555555554
Q ss_pred HHHHH
Q 013411 417 IQSIM 421 (443)
Q Consensus 417 ~~~~~ 421 (443)
...+.
T Consensus 182 ~~~~~ 186 (406)
T PRK15402 182 FGLWR 186 (406)
T ss_pred HHHHH
Confidence 44433
No 175
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.36 E-value=8.7e-12 Score=116.81 Aligned_cols=163 Identities=13% Similarity=0.132 Sum_probs=135.7
Q ss_pred CcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHH
Q 013411 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP 84 (443)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~ 84 (443)
++.+...+..++.........+..|.+.++ .+.+..+.|++.+...++..+..++.+++.||+|+|+.+.++
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~--------~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~ 276 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA--------AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLIS 276 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHH
Confidence 334455556666666676777777877654 567778899999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHH-HHhhhhhhhhhhhhhh
Q 013411 85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFS-GIVSGAFVCGTISARF 163 (443)
Q Consensus 85 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~ 163 (443)
.+...+...+.+++++ .+.+++.+++.|+ ..+...+....++.+. |+++|++..++++ ...++|..+||.+++.
T Consensus 277 ~~~~~~~~~~~~~~~~---~~~~~~~q~l~g~-~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~ 351 (382)
T TIGR00902 277 AIACVGRWAIIGAIEA---FPLIFLLQILHCG-TFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF 351 (382)
T ss_pred HHHHHHHHHHHHhHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 9999999999999 9999999999999998 9999999999986 5678889999988887
Q ss_pred h----chhhHHHHHHHHHHHHH
Q 013411 164 I----STSAAFQAATAGSIISA 181 (443)
Q Consensus 164 ~----~w~~~f~~~~~~~~~~~ 181 (443)
+ ++ ..|++.+.++++..
T Consensus 352 l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 352 IYPTLGA-GTFVFMAIIAAAAF 372 (382)
T ss_pred HHHhccH-HHHHHHHHHHHHHH
Confidence 6 43 55677776666543
No 176
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.35 E-value=6.7e-11 Score=110.82 Aligned_cols=153 Identities=10% Similarity=0.078 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HH
Q 013411 258 LQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AA 336 (443)
Q Consensus 258 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 336 (443)
....+|.+.++ +|.++.+.+...+...++..++.++. |++.||+|||+.+..+..+..++.......++.+.... ..
T Consensus 10 ~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~-g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 87 (377)
T PRK11102 10 YLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFY-GPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRF 87 (377)
T ss_pred HhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhh-chHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 34456677665 69999999999999999999999555 79999999999999999999999888888777665554 45
Q ss_pred HHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHH
Q 013411 337 VFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAF 416 (443)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (443)
+.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ + ...+.+.+++.++..
T Consensus 88 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-------~-~~~~~~~~~~~~~~~ 159 (377)
T PRK11102 88 LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-------W-HAIFWVLALAAILAA 159 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------h-HHHHHHHHHHHHHHH
Confidence 56778888888899999999999999999999999999999999999999988642 1 234455555544444
Q ss_pred HHHH
Q 013411 417 IQSI 420 (443)
Q Consensus 417 ~~~~ 420 (443)
....
T Consensus 160 ~~~~ 163 (377)
T PRK11102 160 ALVF 163 (377)
T ss_pred HHHH
Confidence 4433
No 177
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.35 E-value=1.7e-11 Score=114.79 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=112.4
Q ss_pred HhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhH
Q 013411 252 NLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWV 331 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (443)
......+....| ++++.+|.++.+.+++.+...++..++.++. |+++||+|||+.+..+..+..++.++....++.+.
T Consensus 8 ~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~-g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (379)
T TIGR00881 8 YLVRKNFALAMP-YLVEEIGLSKTDLGLLLSSFSIAYGISKFVM-GSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWV 85 (379)
T ss_pred HHhHHhhhhhhH-HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhh-hHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHH
Confidence 333344444445 4566689999999999999999999999555 79999999999999999999999888888887766
Q ss_pred HHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHH-hHHHHHHh
Q 013411 332 PYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPL-AFSPLTAL 390 (443)
Q Consensus 332 ~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~-~~g~l~~~ 390 (443)
... ..+.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|. +.+.+.+.
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 146 (379)
T TIGR00881 86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL 146 (379)
T ss_pred HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc
Confidence 555 455678888889999999999999999999999999999999999994 55555443
No 178
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=1.2e-09 Score=101.14 Aligned_cols=308 Identities=15% Similarity=0.066 Sum_probs=193.9
Q ss_pred HHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcC
Q 013411 54 QAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADN 133 (443)
Q Consensus 54 ~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~ 133 (443)
.++.+....+.+++.+.+.|+.|.|+.++++......-.+..-+-++ +.+++.-.+.|+ |.+..+...-.+++|.
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~----y~~yfssallG~-Gaallw~GqG~ylt~~ 130 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNS----YYLYFSSALLGF-GAALLWTGQGGYLTSN 130 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcch----HHHHHHHHHhhh-hHHheecccceehhhc
Confidence 67777788889999999999999999999999988877776666554 778899999999 9999999999999999
Q ss_pred CCCCcchhHHHHHHHHhhhhhhhhhhhhhhhc------------hh-hH----------HHHHHHHHHHHHHHHHHhccC
Q 013411 134 VPPGRRASVFGIFSGIVSGAFVCGTISARFIS------------TS-AA----------FQAATAGSIISAVYMRIFLPE 190 (443)
Q Consensus 134 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~------------w~-~~----------f~~~~~~~~~~~~~~~~~~~e 190 (443)
.+++.+.+..++..+....+.++|..+-..+. .+ .. ..+.+++..+..+.......+
T Consensus 131 st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~ 210 (461)
T KOG3098|consen 131 STRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFL 210 (461)
T ss_pred CChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeec
Confidence 99999999999999888888888866554331 11 11 111111111111111111111
Q ss_pred CCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHH--
Q 013411 191 SVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKA-- 268 (443)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 268 (443)
+.+... .+.+..+ ....+..+...+.+ +++++..+....+..++.........|..+.-
T Consensus 211 p~~~~~-----------------~~~~~~~-~~~~~~l~~~~~l~-~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~ 271 (461)
T KOG3098|consen 211 PSKDVV-----------------NCKSSSE-TSFSELLKLTFKLL-KTPKMLLLFPFFFYTGLETSFWISIYPTCISFTR 271 (461)
T ss_pred Cccchh-----------------hhhhhcc-ccHHHHHHHHHHHh-cCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Confidence 111100 0000000 11112334445555 45555555555555545444444444544332
Q ss_pred HcCcCh-hhHHHHHHHHHHHHHHHHHHHHHHhhh---hcccchHHHHHHHHHHHHHHHHHhhcc----------------
Q 013411 269 KFHFNK-NQFADLMVIAGIAGTISQLIMMPVLAP---TVGEARLLSFGLLFGCVHMFLYSVAWS---------------- 328 (443)
Q Consensus 269 ~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 328 (443)
..+.+. ...+......+++.++++... +.+.| ++|+++++.++..+..+..++.....+
T Consensus 272 ~~~~n~~~~~ai~~~~~g~g~v~~g~~~-~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~ 350 (461)
T KOG3098|consen 272 KLGSNTTYLIAIYSIGIGLGEVIGGLDF-SILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFT 350 (461)
T ss_pred hccCcchhHHHHHHHHHhHHHHHHHHHH-HHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccc
Confidence 223332 234555666777777766444 45554 467888888888887777666554321
Q ss_pred --h-hHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHH
Q 013411 329 --S-WVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL 387 (443)
Q Consensus 329 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 387 (443)
. ...++..+.|++-.......+.++.+.+| ++|.++.++..+-..++..++-...+..
T Consensus 351 ~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 351 PSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred cchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 0 11222455677777888888999999995 8899999998888888777765555433
No 179
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.34 E-value=1e-10 Score=111.65 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhc----chhHHH
Q 013411 258 LQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW----SSWVPY 333 (443)
Q Consensus 258 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 333 (443)
+....| ++++ .|.++.+.++..+...++..++.++. |++.||+|||+.+..+.++.+++.+.....+ +.+...
T Consensus 46 ~~~~~p-~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~-G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 122 (438)
T TIGR00712 46 FALAMP-YLVE-QGFSKGELGFALSAISIAYGFSKFIM-GSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMF 122 (438)
T ss_pred HHhhhH-HHHH-cCCCHhHhHHHHHHHHHHHHHhhhcc-chhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHH
Confidence 333444 5555 49999999999999999999999555 7999999999999988888888777665432 222222
Q ss_pred H-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHH
Q 013411 334 A-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVS 412 (443)
Q Consensus 334 ~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (443)
. ..+.+++.+..++.....+.|.+|+++|++++|+.+....++..++|.+.+...+...+ | ...+++.++..
T Consensus 123 ~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~------w-~~~f~~~~~~~ 195 (438)
T TIGR00712 123 VLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND------W-HAALYFPAICA 195 (438)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh------h-HHHHHHHHHHH
Confidence 2 34557777777888888999999999999999999999999999999887765543211 1 23555555555
Q ss_pred HHHHHHH
Q 013411 413 MTAFIQS 419 (443)
Q Consensus 413 ~~~~~~~ 419 (443)
++..+..
T Consensus 196 ~i~~~~~ 202 (438)
T TIGR00712 196 IIVALFA 202 (438)
T ss_pred HHHHHHH
Confidence 5444333
No 180
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.33 E-value=1e-10 Score=111.43 Aligned_cols=146 Identities=14% Similarity=0.076 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 013411 243 QAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFL 322 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 322 (443)
...+..+...+.........| .+++.+|.++.+.++..+...++..++.++. |++.||+|||+.+..+.+..+++...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~-g~l~dr~g~r~~l~~~~~~~~~~~~~ 99 (426)
T PRK12307 22 SAWLGYVFDGFDFMLIFYIMY-LIKADLGLTDMEGAFLATAAFIGRPFGGALF-GLLADKFGRKPLMMWSIVAYSVGTGL 99 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 333444444444434333333 4456679999999999999999999999555 89999999999999999999999888
Q ss_pred HHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 323 YSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 323 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
....++.+.... -.+.|++.+..++....++.|.+|+++|+++.++......+|..+++.+.+.+.+.
T Consensus 100 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~ 168 (426)
T PRK12307 100 SGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA 168 (426)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence 888877766655 45668888888999999999999999999999999999899999999888877665
No 181
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.32 E-value=2.9e-11 Score=113.64 Aligned_cols=177 Identities=11% Similarity=0.066 Sum_probs=127.6
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHH
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT 86 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~ 86 (443)
.+.+.+..++...+.......+|.+.++ .+.+..+.|...+.+.++..++.++.|++.||+|||+.+..+..
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~--------~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~ 278 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE--------IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALV 278 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 3334444444445555555667777654 35666778999999999999999999999999999999998888
Q ss_pred HhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCC-CCcchhHHHHHHHHhhhhhhhhhhhhhhh-
Q 013411 87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVP-PGRRASVFGIFSGIVSGAFVCGTISARFI- 164 (443)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~~~- 164 (443)
+..++..+....++. ...+. -++.|+ +.+...|.......|..+ +++|++..+..+....++..++|.+.+++
T Consensus 279 l~~~~~~~~~~~~~~--~~~~~--~~l~g~-g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~ 353 (393)
T PRK09705 279 LQLVGFCGFIWLPLQ--LPVLW--AMVCGL-GLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR 353 (393)
T ss_pred HHHHHHHHHHHccch--HHHHH--HHHHHH-hccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776655543331 22222 245677 667777777767777775 57899999999999999999999888876
Q ss_pred ----chhhHHHHHHHHHHHHHHHHHHhccCCCCccc
Q 013411 165 ----STSAAFQAATAGSIISAVYMRIFLPESVRDED 196 (443)
Q Consensus 165 ----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~ 196 (443)
+++..|++.+...++..+....+.||++.++.
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 354 SISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 35677777777777766666677777655443
No 182
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.32 E-value=1.3e-10 Score=113.08 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 013411 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM 320 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 320 (443)
+....+..++..+.........|.+ .+.+|.++.+.+...+...++..++.++. |++.||+|||+.+..+.++.+++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-g~l~dr~g~r~~~~~~~~~~~~~~ 99 (496)
T PRK03893 22 FSAAWLGYLLDGFDFVLITLVLTEV-QGEFGLTTVQAASLISAAFISRWFGGLLL-GAMGDRYGRRLAMVISIVLFSVGT 99 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCcHHHHHHHHHHHHHHH
Confidence 3344445555555555555555554 45679999999999999999999999554 799999999999999999998888
Q ss_pred HHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 321 FLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 321 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
+...+.++.+.... ..+.|++.+..++....++.|.+|+++|+++.+..+....+|..++|.+.+.+.+.
T Consensus 100 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 170 (496)
T PRK03893 100 LACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV 170 (496)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888777665555 55668888888899999999999999999999999999999999999999988775
No 183
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.32 E-value=3.4e-10 Score=106.66 Aligned_cols=148 Identities=10% Similarity=0.034 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 013411 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM 320 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 320 (443)
+..+....+...+.........|.+ ++.+|.++.+.|+..+...++..++.++. +++.||+|||+.+..+..+.+++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~-g~l~~r~G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPA-AIFMKKLSYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCchHHHHHHHHHHHHHH
Confidence 3344455555555554444555555 66789999999999999999999999555 799999999999999999999888
Q ss_pred HHHHhh---cchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 321 FLYSVA---WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 321 ~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
.+.... ++.+.... .++.|.+.+...+..++++.+..|++++++..++.+....+|..++|.+.+.+...
T Consensus 83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 775443 23444333 56668888999999999999999999999999999999999999999999988644
No 184
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.31 E-value=9.9e-11 Score=112.72 Aligned_cols=131 Identities=10% Similarity=0.098 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHh-----hcchhHH
Q 013411 258 LQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSV-----AWSSWVP 332 (443)
Q Consensus 258 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 332 (443)
+....|. +.+.+|.+..+.|++.+...++..+++++. |+++||+|+|+++..+.++.++..+.... .++.+..
T Consensus 48 ~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~-G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 125 (467)
T PRK09556 48 FKAAQND-MISTYGLSTTELGMIGLGFSITYGVGKTLV-GYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLM 125 (467)
T ss_pred hhhhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhh-hhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 3444555 445679999999999999999999999555 89999999999998888877776665554 2444444
Q ss_pred HH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 333 YA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 333 ~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
.. -.+.|++.+...|...+++.+.+|+++||+++|+.+....+|..+++.+..++.+.
T Consensus 126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~ 184 (467)
T PRK09556 126 IALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY 184 (467)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence 44 45568888888899999999999999999999999999999999999888777665
No 185
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.30 E-value=4.3e-10 Score=106.38 Aligned_cols=147 Identities=14% Similarity=0.095 Sum_probs=116.4
Q ss_pred HHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhh
Q 013411 266 LKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVF 344 (443)
Q Consensus 266 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 344 (443)
..+.+|.+..+.+...+...++..+++++. |+++||+|||+++..+..+..++.+.....++.+..+. -++.|++.+.
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~ 120 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLL-GPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICF 120 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhh-hHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999999999554 79999999999999999999888888888877665555 4555776666
Q ss_pred hhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 013411 345 SHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIM 421 (443)
Q Consensus 345 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (443)
..+....+..|.+|++++++++++.+....++..++|.+.+.+.+..+ ....|++.++..++..+..+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g--------w~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 121 IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH--------WKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHHHHHH
Confidence 566677888999999999999999999999999999999998887631 133556666665555554443
No 186
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.29 E-value=4.2e-10 Score=107.91 Aligned_cols=120 Identities=16% Similarity=0.153 Sum_probs=95.0
Q ss_pred HHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhc----chhHHHH-H
Q 013411 261 SMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW----SSWVPYA-A 335 (443)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~ 335 (443)
..| ++.+. |.++.+.+...+...++..+++++. |++.||+|||+++..+.++.+++.+.+.+.. +.+.... .
T Consensus 51 ~~p-~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~-G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 127 (452)
T PRK11273 51 AMP-YLVEQ-GFSRGDLGFALSGISIAYGFSKFIM-GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 127 (452)
T ss_pred hhH-HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhh-hhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence 344 56666 9999999999999999999999555 8999999999999999988888887776643 3333333 4
Q ss_pred HHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHH-hHHh
Q 013411 336 AVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLV-SPLA 383 (443)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-~~~~ 383 (443)
.+.+++.+...+.....+.+.+|+++|+++.|+.+....+|..+ +|.+
T Consensus 128 ~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 176 (452)
T PRK11273 128 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF 176 (452)
T ss_pred HHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 55677777777878888899999999999999998888888654 4443
No 187
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.29 E-value=3.5e-10 Score=106.63 Aligned_cols=172 Identities=8% Similarity=-0.000 Sum_probs=120.2
Q ss_pred ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Q 013411 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC 317 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (443)
+|.++......++..........++|.|+++++|.++.+.|...+...+...+++++. |+++||+|||+.+..+.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~-G~l~Dr~grr~~~~~~~~~~~ 79 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLF-GLISDKLGLKKHLLWIISGLL 79 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCcHHHHHHHHHHHH
Confidence 4667778888888888888888899999999899999999999999999999999555 899999999999887665554
Q ss_pred HHHHHHH---hhc----chh-HHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHH
Q 013411 318 VHMFLYS---VAW----SSW-VPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 318 ~~~~~~~---~~~----~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (443)
+...... ..+ ..+ .... .++.+++.+...+....+..+..+ +++..+|.......+|..++|.+.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~ 157 (396)
T TIGR00882 80 VLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILF 157 (396)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhh
Confidence 4333221 111 111 1111 233455666667777777766543 3456778888888999999999999876
Q ss_pred HhhhcCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 013411 389 ALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIM 421 (443)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (443)
+. + ....+.+.+++.++..+..+.
T Consensus 158 ~~--~-------~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 158 SI--D-------PQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred cc--C-------chHHHHHHHHHHHHHHHHHHH
Confidence 53 1 123555555555554444443
No 188
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.28 E-value=2.2e-11 Score=117.86 Aligned_cols=150 Identities=16% Similarity=0.108 Sum_probs=112.1
Q ss_pred hhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHh---ccCCc-----hhHHHHHHHHhh
Q 013411 43 CSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAY---SRSRN-----FFYAYYVLRTLT 114 (443)
Q Consensus 43 ~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~---~~~~~-----~~~~l~~~r~l~ 114 (443)
.+.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.++..+ ....+ ....+....++.
T Consensus 314 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (481)
T TIGR00879 314 AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFI 393 (481)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHH
Confidence 3445556788888999999999999999999999999999988888777766652 11110 133333333333
Q ss_pred hhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----chhhHHHHHHHHHHHHHHHHHHhccC
Q 013411 115 AMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIFLPE 190 (443)
Q Consensus 115 G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e 190 (443)
+. ......+....++.|.+|+++|++++++.+....+|.+++|.+.+.+ +|++.|++.++++++..+...++.||
T Consensus 394 ~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~ 472 (481)
T TIGR00879 394 AF-FAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPE 472 (481)
T ss_pred HH-HHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheeccc
Confidence 33 22333466677889999999999999999999999999999887654 78999999888888877777667777
Q ss_pred CCC
Q 013411 191 SVR 193 (443)
Q Consensus 191 ~~~ 193 (443)
+++
T Consensus 473 ~~~ 475 (481)
T TIGR00879 473 TKG 475 (481)
T ss_pred CCC
Confidence 544
No 189
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.28 E-value=7.2e-11 Score=113.27 Aligned_cols=167 Identities=20% Similarity=0.221 Sum_probs=134.5
Q ss_pred CcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHH
Q 013411 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP 84 (443)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~ 84 (443)
+.+..+....++..+........+|.+.++. ++.++...|++.++..+|..+++++.+++.+|+++++.+..+
T Consensus 218 ~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~-------l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~ 290 (524)
T PF05977_consen 218 PPLRSVLLRSFLFNLFASAVWALLPLFARDV-------LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLA 290 (524)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH-------hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHH
Confidence 3344444444445555555566778887663 566777899999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh
Q 013411 85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI 164 (443)
Q Consensus 85 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~ 164 (443)
.++.+++.+..+++++ .+..++.-++.|+ +.....+...+.+.+..|++.|||++++++.....+..+|..+.+.+
T Consensus 291 ~~~~a~~~~~lal~~~---~~~~~~~l~l~G~-~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~l 366 (524)
T PF05977_consen 291 SLLFALALLLLALSPS---FWLALIALFLAGA-AWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFL 366 (524)
T ss_pred HHHHHHHHHHHhcchH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 8988999999998 87888888889999999999999999999888887777777776664
Q ss_pred ----chhhHHHHHHHHHHHHHH
Q 013411 165 ----STSAAFQAATAGSIISAV 182 (443)
Q Consensus 165 ----~w~~~f~~~~~~~~~~~~ 182 (443)
|-+..+.+.++..++..+
T Consensus 367 a~~~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 367 ADHFGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHhCHHHHHHHHHHHHHHHHH
Confidence 667777776665444433
No 190
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.28 E-value=4.7e-10 Score=103.97 Aligned_cols=157 Identities=10% Similarity=-0.079 Sum_probs=109.6
Q ss_pred hhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-
Q 013411 256 AGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA- 334 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 334 (443)
..+...+|.+.+ .+|.|+.+.|+..+...++..+++++. |++.||+|||+++.........+.......++.+....
T Consensus 8 ~~~~~~lp~i~~-~~~~s~~~~g~~~s~~~~g~~i~~~~~-G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (368)
T TIGR00903 8 VTFSPVLSLVAE-DIDVSKEELGLLAITYPAAFLALTIPS-GLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLAC 85 (368)
T ss_pred HHHHhhHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344445555554 579999999999999999999999665 89999999998776555544444332222244444443
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHH
Q 013411 335 AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMT 414 (443)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (443)
-++.|++.+. .+.......|.+|+++|++++++.+....+|..+++.+.+++.+..+ | ...+.+.+++.++
T Consensus 86 R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-------W-r~~f~~~~~l~~~ 156 (368)
T TIGR00903 86 QLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-------L-QLLIIPIAAVAAA 156 (368)
T ss_pred HHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------h-HHHHHHHHHHHHH
Confidence 4555777664 45556666899999999999999999999999999999999887632 2 2355555555555
Q ss_pred HHHHHHHhh
Q 013411 415 AFIQSIMIR 423 (443)
Q Consensus 415 ~~~~~~~~~ 423 (443)
..+..+...
T Consensus 157 ~~~~~~~~l 165 (368)
T TIGR00903 157 GIILVLAAL 165 (368)
T ss_pred HHHHHHHHc
Confidence 444444443
No 191
>PRK09952 shikimate transporter; Provisional
Probab=99.27 E-value=7.7e-11 Score=112.38 Aligned_cols=166 Identities=13% Similarity=0.144 Sum_probs=110.2
Q ss_pred HHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHH
Q 013411 17 HCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILA 96 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~ 96 (443)
..+......+..|.+..+. ++.+......+.....+...++.++.|+++||+|||+.++.+.++..++.....
T Consensus 262 ~~~~~~~~~~~~~~y~~~~-------~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~ 334 (438)
T PRK09952 262 ELLTMYIVTAFALNYSTQN-------LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFF 334 (438)
T ss_pred HHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 3344444555667666542 333333444455556667788889999999999999998888776655443332
Q ss_pred hc-cCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHH-Hhhhhhhhhhhhhhhh------chhh
Q 013411 97 YS-RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSG-IVSGAFVCGTISARFI------STSA 168 (443)
Q Consensus 97 ~~-~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~l~~~~------~w~~ 168 (443)
.. .+.+..+.+++..++.|+ +.+...+...++++|.+|++.|+...++... +..+|..++|.+.+.+ +|+.
T Consensus 335 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~ 413 (438)
T PRK09952 335 MALEAQSIFWIVFFSIMLANI-AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHS 413 (438)
T ss_pred HHHHcCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 21 111114444556677777 7777778888999999999999988888544 4457888888887765 3677
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC
Q 013411 169 AFQAATAGSIISAVYMRIFLPES 191 (443)
Q Consensus 169 ~f~~~~~~~~~~~~~~~~~~~e~ 191 (443)
.+...++..++..+.. +.+||+
T Consensus 414 ~~~~~~~~~~i~~v~~-~~~~~~ 435 (438)
T PRK09952 414 VAIYLLAGCLISAMTA-LLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHH-HHcccc
Confidence 7777777666655544 456664
No 192
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.26 E-value=8e-10 Score=101.96 Aligned_cols=130 Identities=11% Similarity=0.075 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHHHcCcChhh-HHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-
Q 013411 257 GLQGSMMYYLKAKFHFNKNQ-FADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA- 334 (443)
Q Consensus 257 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 334 (443)
....+...++.+.+|+++.+ .|.+.+....+..+..+ .+|++.||+|.|+++..+.+..++..++.++..+.+.+.+
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qI-p~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~ 121 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLV-PVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLM 121 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777788999999 99999999999999994 4589999999999999999999999999999877665555
Q ss_pred HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHH
Q 013411 335 AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (443)
-+++|++.+... ....++.+.+|+++|+++.|+.+....+|.++++.+.+.+.
T Consensus 122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999888 99999999999999999999999999999999999999943
No 193
>PRK10133 L-fucose transporter; Provisional
Probab=99.26 E-value=1.5e-09 Score=103.25 Aligned_cols=145 Identities=10% Similarity=-0.025 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Q 013411 242 SQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMF 321 (443)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (443)
..+.+..+...+.........|.+ ++.+|.++.+.++..+...++..+++++. |++.||+|||+++..+..+..++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~-g~l~dr~G~r~~l~~g~~~~~~~~~ 106 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPA-GILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 444555566666666666677766 77789999999999999999999999555 7999999999999999999998887
Q ss_pred HHH---hhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHH
Q 013411 322 LYS---VAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 322 ~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (443)
+.. ..++.+.... .++.|++.+...+..++++.+..|+++++...+..+....+|..++|.+.+.+.
T Consensus 107 l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 652 3445554444 566788999999999999998877666667899999999999999999988765
No 194
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=99.26 E-value=4.8e-09 Score=95.54 Aligned_cols=325 Identities=16% Similarity=0.108 Sum_probs=178.5
Q ss_pred HHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhh
Q 013411 50 SGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAY 129 (443)
Q Consensus 50 ~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 129 (443)
.|.+.-+..+...+.-+.+.++.+|...+.=......+..++.++.+++++ .+.=+++-.+.++ +.|........+
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~---v~~~l~Gv~las~-ssg~GE~tfL~l 136 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPS---VWVRLLGVVLASL-SSGLGEVTFLSL 136 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccc---hhHHHHHHHHHhh-hhhhhHHHHHHH
Confidence 355667777778888888889999987655556666788889999999998 8888899999998 877776666665
Q ss_pred hhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh---h--chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccc
Q 013411 130 VADNVPPGRRASVFGIFSGIVSGAFVCGTISARF---I--STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSS 204 (443)
Q Consensus 130 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~---~--~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 204 (443)
.. .+++ ...+.++.+.+.+.++|+..-.. . +.|..+.+...+.++..+..++.+|+++.++...+.....
T Consensus 137 t~-~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~ 211 (402)
T PF02487_consen 137 TH-FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESED 211 (402)
T ss_pred HH-hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCC
Confidence 44 5543 34677777777777777654322 2 3477777777777665555555666543322111000000
Q ss_pred hhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHH-HHHHHH-HHHcCcChhhHHHHHH
Q 013411 205 KAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQG-SMMYYL-KAKFHFNKNQFADLMV 282 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~g~~~~~~~~~~~ 282 (443)
+.+++...++..+.+++...+..+++-++.. |.+...++-.+...++.+.++. ..|... .....-...++.++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~---k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~ 288 (402)
T PF02487_consen 212 EAEDDLLESETSESKPDSSSKLSFKEKLKRL---KPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQL 288 (402)
T ss_pred cccccccccccccccccccchhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHH
Confidence 0000000000001111111122233322222 1121122222222222222221 112211 1111222345666667
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH---HHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCC
Q 013411 283 IAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFL---YSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVA 358 (443)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p 358 (443)
.+.++.++++--. .+. |+.+.+++.+-..+..+.+++ +-+.++.|.... ++.-|+..|..+...+..+.|..|
T Consensus 289 ~YQ~GVFISRSS~--~~~-rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~ 365 (402)
T PF02487_consen 289 LYQLGVFISRSSL--PFF-RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVP 365 (402)
T ss_pred HHHHHHhhhhcce--eee-ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Confidence 7777766666221 111 232222222222222222211 222345555544 444588888899888999999999
Q ss_pred CCcchhHHhHHhHHHHHHHHHhHHhHHHHHH
Q 013411 359 SNEQGKAQGCISGICSFANLVSPLAFSPLTA 389 (443)
Q Consensus 359 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 389 (443)
+++|.-++|.......+|..++..+.-++-.
T Consensus 366 ~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 366 PEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999988888888776655433
No 195
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.25 E-value=2.9e-10 Score=104.24 Aligned_cols=181 Identities=11% Similarity=0.144 Sum_probs=150.3
Q ss_pred cChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcC----cChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-cccchHHHH
Q 013411 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFH----FNKNQFADLMVIAGIAGTISQLIMMPVLAPT-VGEARLLSF 311 (443)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 311 (443)
++|.+..++..-+.--++++++...+..|+...++ +|++++..++..++...-+.. +++||++|| +|+|+.+..
T Consensus 19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~-i~GG~laDr~LG~~~tI~l 97 (498)
T COG3104 19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTP-IIGGWLADRVLGTRRTIVL 97 (498)
T ss_pred CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHH-HHHHHHHHHhcchhHHHHH
Confidence 56778888888999999999999999999998888 999988777777777777776 777999999 599999999
Q ss_pred HHHHHHHHHHHHHhhc--chhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCC--cchhHHhHHhHHHHHHHHHhHHhHHH
Q 013411 312 GLLFGCVHMFLYSVAW--SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASN--EQGKAQGCISGICSFANLVSPLAFSP 386 (443)
Q Consensus 312 ~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~~~~~~g~ 386 (443)
+.++..++.+++.... .....++ ..++.++.+..=+...+++.|++|++ +|-.++++..+..++|+.++|.+.++
T Consensus 98 Gail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~ 177 (498)
T COG3104 98 GAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGL 177 (498)
T ss_pred HHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHH
Confidence 9999999999998874 3333333 56667899999999999999999965 46778888899999999999999999
Q ss_pred HHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhhcCC
Q 013411 387 LTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIRVAP 426 (443)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (443)
+.+.++ ....|..+++-..++++..+..+|+.
T Consensus 178 ~~~~~g--------~~~gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 178 LAINYG--------WHVGFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred HHHhhC--------HHHHHHHHHHHHHHHHHHHHHccchh
Confidence 999853 24577778888888888877766543
No 196
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.23 E-value=2.4e-11 Score=109.69 Aligned_cols=176 Identities=9% Similarity=0.124 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 013411 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM 320 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 320 (443)
...+.++..+...--+.+.... .=.++.++.++...|++.....+..+++++++ |++.||++|++++.+|..+..++.
T Consensus 35 l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~-gyLadryNR~~v~~vG~~iW~~Av 112 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLF-GYLADRYNRKRVIAVGIFIWTLAV 112 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHH-HHHHhhcCcceEEeeHHHHHHHHH
Confidence 3334444444444433333322 22355679999999999999999999999666 799999999999999999999999
Q ss_pred HHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCc
Q 013411 321 FLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFN 399 (443)
Q Consensus 321 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 399 (443)
+..++..+.|...+ -.+.|++.+...|...++++|.+|.++|++++++.++....|..+|-..++.+.++.+.
T Consensus 113 ~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~------ 186 (493)
T KOG1330|consen 113 FASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW------ 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc------
Confidence 99999988888777 46679999999999999999999999999999999999999999998888877776432
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcC
Q 013411 400 FPGFSIMCIGFVSMTAFIQSIMIRVA 425 (443)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
..+.+...+++.++..++...+.++
T Consensus 187 -Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 187 -WRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred -eEEEEEeehHHHHHHHHHHHhhccC
Confidence 3456677777777777776666544
No 197
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.22 E-value=1.3e-10 Score=112.68 Aligned_cols=148 Identities=16% Similarity=0.106 Sum_probs=105.4
Q ss_pred hhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhcc--CCchhHHHHHHHHhhhhhccc-
Q 013411 44 SLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSR--SRNFFYAYYVLRTLTAMVCEG- 120 (443)
Q Consensus 44 ~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~~- 120 (443)
+.+....++......+...++.++.|+++||+|||+.++.+.++.+++.++++... +.. ......+.++.+. +.+
T Consensus 302 g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~ 379 (479)
T PRK10077 302 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-GIVALLSMLFYVA-AFAM 379 (479)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHH-HHhc
Confidence 33333345666667788899999999999999999999999999888877765432 211 1122233333343 222
Q ss_pred hhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhh----------hhchhhHHHHHHHHHHHHHHHHHHhccC
Q 013411 121 SIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR----------FISTSAAFQAATAGSIISAVYMRIFLPE 190 (443)
Q Consensus 121 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~----------~~~w~~~f~~~~~~~~~~~~~~~~~~~e 190 (443)
...|....++.|.+|+++|++++++......+|..+++.+.. ..+|++.|++.+++.++..++.+++.||
T Consensus 380 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 459 (479)
T PRK10077 380 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 459 (479)
T ss_pred cccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhcccc
Confidence 233677899999999999999999999988888887743332 3467888888888777777777677787
Q ss_pred CCC
Q 013411 191 SVR 193 (443)
Q Consensus 191 ~~~ 193 (443)
+++
T Consensus 460 ~~~ 462 (479)
T PRK10077 460 TKG 462 (479)
T ss_pred CCC
Confidence 654
No 198
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.22 E-value=4e-11 Score=112.91 Aligned_cols=160 Identities=14% Similarity=0.057 Sum_probs=115.1
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHH
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT 86 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~ 86 (443)
........++.........+.+|.+.++. ++.+..+.+...+...++..++.++.|+++||+|||+.+.....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 293 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQT-------LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 33344444555555555666778776552 45556678888999999999999999999999999998776554
Q ss_pred HhHHHH--HHHHhc--cCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHH-HHHhhhhhhhhhhhh
Q 013411 87 LSIIPL--AILAYS--RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIF-SGIVSGAFVCGTISA 161 (443)
Q Consensus 87 ~~~i~~--~~~~~~--~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~l~ 161 (443)
+..+.. ....+. ++ .+.++...++.|+ +.+...+...+++.|.+|+++|+++.++. +....+|..++|.++
T Consensus 294 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~ 369 (394)
T TIGR00883 294 LAALLAVPLLMALLDSGS---FTLFFFLVLGLAL-IGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIA 369 (394)
T ss_pred HHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHH-HHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHH
Confidence 443332 222222 33 6777788888898 77788888999999999999999999974 556667888888888
Q ss_pred hhh----c-hhhHHHHHHHHH
Q 013411 162 RFI----S-TSAAFQAATAGS 177 (443)
Q Consensus 162 ~~~----~-w~~~f~~~~~~~ 177 (443)
+.+ + |+..++......
T Consensus 370 g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 370 AALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HHHHHHcCcchhHHHHHHHHH
Confidence 765 4 666665555433
No 199
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.22 E-value=2.2e-10 Score=108.73 Aligned_cols=179 Identities=18% Similarity=0.239 Sum_probs=140.8
Q ss_pred CCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccc--hh
Q 013411 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRK--AL 80 (443)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr--~~ 80 (443)
|.+.....+++.++..-+.+.+......|..+ +++.+..+...+.-+..+...+|++++|++.||+|.| ++
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~-------~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~ 351 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATE-------VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRT 351 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 34555555666666665666666666666543 5788888899999999999999999999999999999 88
Q ss_pred hHHHHHHhHHHHHHHHh--------ccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhh
Q 013411 81 LTVPITLSIIPLAILAY--------SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSG 152 (443)
Q Consensus 81 ~~~~~~~~~i~~~~~~~--------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 152 (443)
++++.+++.+..+...+ ..+ -+.+.+.-++.|+ ..|..++...++.+|..|+++.+..+|++....-.
T Consensus 352 l~~~l~~~~~i~~~g~~G~~~~~~g~~~---~~~f~~~a~~~G~-~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ 427 (477)
T PF11700_consen 352 LLISLILWIIIPLYGLFGFWPSFFGLKS---PWEFWVLAVLIGL-FMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKA 427 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCccc---HHHHHHHHHHHHH-HhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 88888777554444333 344 6788889999999 99999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhh-----chhhHHHHHHHHHHHHHHHHHHhccCCCC
Q 013411 153 AFVCGTISARFI-----STSAAFQAATAGSIISAVYMRIFLPESVR 193 (443)
Q Consensus 153 g~~~g~~l~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~ 193 (443)
...+||++-+.+ +-|+.+....++.++.+++. ..+++++.
T Consensus 428 ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g 472 (477)
T PF11700_consen 428 SSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKG 472 (477)
T ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhh
Confidence 999999988876 35788877777766655544 66665433
No 200
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=99.21 E-value=1.1e-07 Score=89.46 Aligned_cols=323 Identities=12% Similarity=0.124 Sum_probs=187.6
Q ss_pred HHHHHHHHHHhHHHHHh-hhcccccccccccchhhHHHHHHhHHHHHHHHhc--cCCch---------------------
Q 013411 48 YLSGFQQAIIGLGTLVM-MPLVGNLSDKYGRKALLTVPITLSIIPLAILAYS--RSRNF--------------------- 103 (443)
Q Consensus 48 ~~~g~~~s~~~~~~~~~-~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~--------------------- 103 (443)
..+.++-+...+..++. .++.+++++|++|++++-.....+.....++++. ++.+.
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 45778888777777777 8999999999999999888777776666665544 11100
Q ss_pred -----hHHHHHHHHhhhhhccchhhh-hhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhhc------------
Q 013411 104 -----FYAYYVLRTLTAMVCEGSIHC-LSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFIS------------ 165 (443)
Q Consensus 104 -----~~~l~~~r~l~G~~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~------------ 165 (443)
.|...+..+...+ -...... .-.+++.|.++.+|-.|..+++..+.++|.++++.+..++.
T Consensus 123 i~~~~~W~~~~FYv~~el-w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~ 201 (472)
T TIGR00769 123 IAILRIWSFALFYVMAEL-WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDG 201 (472)
T ss_pred HHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCh
Confidence 2333344444454 3333333 67789999999999999999999999999999998776652
Q ss_pred hh----hHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhh
Q 013411 166 TS----AAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTF 241 (443)
Q Consensus 166 w~----~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (443)
|. ..+.+.++...+ .+.+...+.+....+++. .+.+ +++++++.+.+..+.++.+.++|.+
T Consensus 202 ~~~~~~~l~~i~~~~~~~-~~~~~~~l~~~~~~~~~~-----------~~~~---~~~~k~k~k~~~~es~k~i~~S~yL 266 (472)
T TIGR00769 202 WHVSLKNLMVIVICSGLA-IILLYWWVNRNVLTDPRS-----------YNPA---LKEKKVKPKMSTMESLKFLVSSPYI 266 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCccc-----------cchh---hccccCCCCCCHHHHHHHHHhCHHH
Confidence 21 122333333333 223333333221111100 0000 0112223355677878877799999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhh----HHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Q 013411 242 SQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQ----FADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC 317 (443)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (443)
+.+.+...+++..........-....+.+ -++.+ .|.+....++..++.+++. +++.+|+|-+....+.-++..
T Consensus 267 ~~ia~~vi~y~~~~nlve~~~k~~v~~~~-p~~~~~~~f~g~~~~~~gi~tl~~~l~~-~~l~~~~Gw~~~a~i~Pii~l 344 (472)
T TIGR00769 267 LDLALLVIAYGISINLVEVTWKSKLKAQY-PSPNEYSAFMGDFSTWTGVVSVTMMLLS-GNVIRKYGWLTAALITPLVML 344 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHH
Confidence 88888888887777666655555555554 24433 3445556677776777555 789999987766555444433
Q ss_pred H---HHHHHHhhcchh----------HHHHHHHHHHhh-hh-------hhhHHHHHHHhcCCCCcchhHHhHHhHHHH-H
Q 013411 318 V---HMFLYSVAWSSW----------VPYAAAVFSILS-VF-------SHPCLRTIVSKQVASNEQGKAQGCISGICS-F 375 (443)
Q Consensus 318 ~---~~~~~~~~~~~~----------~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~ 375 (443)
+ +++.+....+.. ........+... .. .+-..--++---.++|.|.++-+....+.. +
T Consensus 345 it~~~Ff~~~~f~~~~~~~~~~l~~~pl~l~v~~g~~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~ 424 (472)
T TIGR00769 345 LTGVAFFSLIFFGGPAAPLVAKLGMTPLLLAVYVGAIQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARL 424 (472)
T ss_pred HHHHHHHHHHHhcccchhhhhhhccChHHHHHHHHHHHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhh
Confidence 3 333222222110 101111122111 11 111111222223567888888888876654 7
Q ss_pred HHHHhHHhHHHHH
Q 013411 376 ANLVSPLAFSPLT 388 (443)
Q Consensus 376 g~~~~~~~~g~l~ 388 (443)
|-..|..+...+.
T Consensus 425 Gks~gs~i~~~l~ 437 (472)
T TIGR00769 425 GKSGGALIQQGLL 437 (472)
T ss_pred hhHHHHHHHHHHH
Confidence 7777776555443
No 201
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.20 E-value=7.9e-10 Score=99.15 Aligned_cols=157 Identities=14% Similarity=0.023 Sum_probs=119.9
Q ss_pred HHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchh---HHHHHHH
Q 013411 261 SMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSW---VPYAAAV 337 (443)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 337 (443)
-+...+.+.+|+|+.|.+++.++..+...+.+++. +.+.||+|.|+....+.++..+-++.+.+....+ ..+..-+
T Consensus 35 ~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~-g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gl 113 (417)
T COG2223 35 PLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPY-GFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGL 113 (417)
T ss_pred HHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHH-HhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 34455567889999999999999999999999777 7999999999999999999999988888876544 4443333
Q ss_pred HHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHH
Q 013411 338 FSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFI 417 (443)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (443)
+.-..+..+....+.+++.+|||++|.++|++. .+++|..+...+.+++....+.. .......+..+..++..+
T Consensus 114 l~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~-----~w~~~~~i~~~~l~v~~v 187 (417)
T COG2223 114 LLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFL-----AWRNVAGIYVVALAIAAV 187 (417)
T ss_pred HHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHH
Confidence 333344566788899999999999999999999 99999999999999888886411 122344445555555555
Q ss_pred HHHHhhc
Q 013411 418 QSIMIRV 424 (443)
Q Consensus 418 ~~~~~~~ 424 (443)
..+...+
T Consensus 188 ~~~~~~~ 194 (417)
T COG2223 188 LAWLGMN 194 (417)
T ss_pred HHHHHhC
Confidence 5555543
No 202
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.20 E-value=2.7e-10 Score=106.75 Aligned_cols=160 Identities=11% Similarity=0.151 Sum_probs=122.5
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHH
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT 86 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~ 86 (443)
.+.+.+..++............|.+.++ .+.+..+.|...+...++..+..++.|++.||+|+|+.+..+.+
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~ 278 (382)
T PRK11128 207 VWRFLLCVSLLQGSHAAYYGFSAIYWQA--------AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAI 278 (382)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHH--------CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3434444444444444455566666543 45666778999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHH-HHhhhhhhhhhhhhhhh-
Q 013411 87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFS-GIVSGAFVCGTISARFI- 164 (443)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~~- 164 (443)
..+++.++.+.+++ .+.+++..++.|+ +.+...+....++.+. +++++++..+..+ ...++|..+||.+++.+
T Consensus 279 ~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~ 353 (382)
T PRK11128 279 CGVVRWGLMGSTTA---LPWLIVIQILHCG-TFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY 353 (382)
T ss_pred HHHHHHHHHHhhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888888 8888999999999 8888888888998887 5667788888886 55677778888888876
Q ss_pred ---chhhHHHHHHHHHHHH
Q 013411 165 ---STSAAFQAATAGSIIS 180 (443)
Q Consensus 165 ---~w~~~f~~~~~~~~~~ 180 (443)
++ ..|+..+.+.++.
T Consensus 354 ~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 354 QHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HhccH-HHHHHHHHHHHHH
Confidence 44 4555555555443
No 203
>PTZ00207 hypothetical protein; Provisional
Probab=99.18 E-value=4.4e-09 Score=101.55 Aligned_cols=128 Identities=8% Similarity=0.107 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhh------cchh
Q 013411 257 GLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVA------WSSW 330 (443)
Q Consensus 257 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 330 (443)
.+..+ ...+++.+|+|..+.+.+.... .......++ .|++.||+|+|+++.++.++..++.++..+. .+.+
T Consensus 45 ~fsv~-s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp-~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~ 121 (591)
T PTZ00207 45 AFNLI-SGAMQARYNLTQRDLSTITTVG-IAVGYFLLP-YSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVV 121 (591)
T ss_pred HHHHH-HHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHH-HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHH
Confidence 34433 3455677899999988887653 333345534 4899999999999999999999999888876 3444
Q ss_pred HHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHH
Q 013411 331 VPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 331 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (443)
.+.+ ..+.|.+.+..++.....+.+.+| ++||++.|+......+|+.+.+.+...+.
T Consensus 122 ~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 122 RLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 445577777777888888889897 78999999999999999976444444333
No 204
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.17 E-value=5.9e-10 Score=98.15 Aligned_cols=118 Identities=14% Similarity=0.039 Sum_probs=97.6
Q ss_pred CcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhHHH
Q 013411 271 HFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLR 350 (443)
Q Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (443)
+.+..-.|++-+..++...+.++.. |.++||+|||.++..+.+..++...+.+...++......=+.+..+-.-.....
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~-G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLW-GCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhh-hhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHH
Confidence 3345567889999999999999555 799999999999999999999999888888887333332233333333456788
Q ss_pred HHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHH
Q 013411 351 TIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTA 389 (443)
Q Consensus 351 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 389 (443)
++++|.+++|+|+.+++..+....+|-++||.++|++..
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 999999999999999999999999999999999999988
No 205
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.17 E-value=2.4e-10 Score=112.97 Aligned_cols=136 Identities=14% Similarity=0.141 Sum_probs=111.5
Q ss_pred hhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhc-------
Q 013411 255 DAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW------- 327 (443)
Q Consensus 255 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 327 (443)
..++....-..++++++++..+.|++.+...++..+..++. +++.||.+||+.+.++.++.+++.++..+.+
T Consensus 48 ~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v-~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~ 126 (633)
T TIGR00805 48 YNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFV-SYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYS 126 (633)
T ss_pred HHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHH-HHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcc
Confidence 33343333445667789999999999999999999999666 7999999999999999999999988876542
Q ss_pred ------------------------------------------c-hh-HH-HHHHHHHHhhhhhhhHHHHHHHhcCCCCcc
Q 013411 328 ------------------------------------------S-SW-VP-YAAAVFSILSVFSHPCLRTIVSKQVASNEQ 362 (443)
Q Consensus 328 ------------------------------------------~-~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 362 (443)
+ .+ .+ +.-++.|++.+..++...+++.|.+|+++|
T Consensus 127 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~ 206 (633)
T TIGR00805 127 YSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNS 206 (633)
T ss_pred ccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcccc
Confidence 0 11 12 224566888888899999999999999999
Q ss_pred hhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 363 GKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 363 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
+.+.|+.+....+|..+|+.+++.+.+.+
T Consensus 207 ~~~~~i~~~~~~iG~~lG~llgg~l~~~~ 235 (633)
T TIGR00805 207 PLYIGILESIAVFGPAFGYLLGSFCLQIY 235 (633)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999998764
No 206
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.16 E-value=3.9e-09 Score=100.65 Aligned_cols=139 Identities=11% Similarity=0.003 Sum_probs=97.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHcC---cChhh---HHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Q 013411 248 AFLSNLADAGLQGSMMYYLKAKFH---FNKNQ---FADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMF 321 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (443)
.++.......+ .+...++.+.++ .+..+ .+..++...++..+++ ++.|++.||+|||+.+..+..+.+++.+
T Consensus 31 ~~~~~~d~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~-~~~G~l~Dr~Grr~~l~~~~~~~~~~~~ 108 (432)
T PRK10406 31 NLVEWFDFYVY-SFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGG-WLFGRIADKHGRKKSMLISVCMMCFGSL 108 (432)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 33333333333 344445555553 44443 2334445555556888 4458999999999999999999999988
Q ss_pred HHHhhcchh---------HHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHH
Q 013411 322 LYSVAWSSW---------VPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 322 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (443)
...+.++.. ....-++.|++.+..++...+++.|.+|+++||++.++.+.....|..+++.+...+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 109 VIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred HHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766542 1222456688888899999999999999999999999888777777777777655544
No 207
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.15 E-value=3.1e-09 Score=102.61 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=115.8
Q ss_pred HHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHH-HHhHHHHHhhhcccccccccccchhhHHHHHHhHHHH
Q 013411 14 IFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQA-IIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPL 92 (443)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s-~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~ 92 (443)
.++...+........+.+..+ +.+.+..+.|+... ...++..++.++.|+++||+|||+.+.++.++.++..
T Consensus 231 ~~l~~~~~~~~~~~~~~~l~~-------~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~ 303 (491)
T PRK11010 231 IVLYKLGDAFAMSLTTTFLIR-------GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSN 303 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333334433333444555433 35677788899874 6668999999999999999999998777666555544
Q ss_pred HHH---Hhc-cCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----
Q 013411 93 AIL---AYS-RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI---- 164 (443)
Q Consensus 93 ~~~---~~~-~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~---- 164 (443)
+.. +.. ++ .+.+...-+++.+ ..+...+...++..+.++++.+++..++.+....+|..+++.+++.+
T Consensus 304 l~~~~l~~~~~~---~~~l~~~~~l~~~-~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~ 379 (491)
T PRK11010 304 AGYWLLSITDKN---LYSMGAAVFFENL-CGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH 379 (491)
T ss_pred HHHHHHHhcccc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 322 233 23 4555555666555 55555566788889999999999999999999999988776666654
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhccCC
Q 013411 165 STSAAFQAATAGSIISAVYMRIFLPES 191 (443)
Q Consensus 165 ~w~~~f~~~~~~~~~~~~~~~~~~~e~ 191 (443)
||+..|.+.++++++..+.. ..++++
T Consensus 380 G~~~~f~~~~~~~l~~l~~~-~~~~~~ 405 (491)
T PRK11010 380 GWPTFYLFSVAAAVPGLLLL-LVCRQT 405 (491)
T ss_pred ChHHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 89999988888887765554 444554
No 208
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.14 E-value=7.4e-10 Score=87.64 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCc
Q 013411 283 IAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNE 361 (443)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~ 361 (443)
...++..++.++. +++.||++||+.+..+.....++.+.....++.+.... ..+.+++.+...+...++..|.+|+++
T Consensus 6 ~~~~~~~~~~~~~-g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 6 GYALGQLIYSPLS-GLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred eehhHHHHHHhhH-HHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 4556677777444 79999999999999988888888777776666555444 556678888888999999999999999
Q ss_pred chhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHh
Q 013411 362 QGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 362 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (443)
|+++.++.+....++..++|.+.+.+.+..+ ....+.+.+...++........
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLG--------WRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHhcccc--------hHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999886631 1234455555555554444443
No 209
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.14 E-value=8.4e-09 Score=97.43 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=108.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhc-----ccch-HHHHHHHHHHH
Q 013411 245 AIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV-----GEAR-LLSFGLLFGCV 318 (443)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~-~~~~~~~~~~~ 318 (443)
...++.+..........+|.|+++. |+|.++.|.+...... .+..++. |.++||+ |||| .+..+....++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~~l~-g~~~Dr~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA--YIFKFLW-APLMDRYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH--HHHHHHH-HHHHHcccccCCCcchhHHHHHHHHHHH
Confidence 3445566666666777899999987 9999999998665554 4666455 7899999 7765 67777888877
Q ss_pred HHHHHHhhcc---hhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 319 HMFLYSVAWS---SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 319 ~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
+...+.+..+ .+.... .++.+.......+...+++.|.+|+++|+++.++......+|..+++.+.+.+.+.
T Consensus 81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~ 156 (402)
T PRK11902 81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR 156 (402)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 7777666532 333333 33446666777889999999999999999999999998899999999998888774
No 210
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.13 E-value=8.5e-10 Score=106.35 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=103.0
Q ss_pred HcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhh--cchhHHHH-HHHHHHhhhhh
Q 013411 269 KFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVA--WSSWVPYA-AAVFSILSVFS 345 (443)
Q Consensus 269 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~ 345 (443)
.++++..+.|.+.+...++..+++++. |++.||+|+|+.+..+.++..++.++.... .+.+..+. -++.|++.+..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~-g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~ 148 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPV-GYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSV 148 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcch-HHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence 468999999999999999999999555 799999999999999988888777665443 23333333 56678888999
Q ss_pred hhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 346 HPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 346 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
.|....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~ 193 (465)
T TIGR00894 149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES 193 (465)
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998876
No 211
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.13 E-value=4.6e-10 Score=120.53 Aligned_cols=162 Identities=14% Similarity=0.074 Sum_probs=125.9
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHH-HHHHHHHHHhHHHHHhhhcccccccccccchhhHHHH
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIY-LSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI 85 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~ 85 (443)
++...+..++...........+|.+..+. ++.+.. +.|++.+...++.++++++.|+++||+++|+.+.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~ 306 (1146)
T PRK08633 234 LWLAIIGLSYFWFISQLAQANFPAYAKEV-------LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGA 306 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHH
Confidence 33334444444444445556667776553 455666 7899999999999999999999999999999999988
Q ss_pred HHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh-
Q 013411 86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI- 164 (443)
Q Consensus 86 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~- 164 (443)
++.+++.++..+..+ .+.+++..++.|+ +.+...+...+++.+.+|+++|++++++.+....+|.++++.++..+
T Consensus 307 ~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 307 LGLALSLFLLPTAPS---LASVLVLFFLFGF-SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777 8888889999998 88888888899999999999999999999999999988777776654
Q ss_pred ----chhhHHHHHHHHHHH
Q 013411 165 ----STSAAFQAATAGSII 179 (443)
Q Consensus 165 ----~w~~~f~~~~~~~~~ 179 (443)
++...|++.+.+.++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 383 GLGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HhccCHHHHHHHHHHHHHH
Confidence 334455555444433
No 212
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.12 E-value=9.2e-10 Score=103.56 Aligned_cols=167 Identities=7% Similarity=-0.039 Sum_probs=116.4
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHh-HHHHHhhhcccccccccccchhhHHHH
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIG-LGTLVMMPLVGNLSDKYGRKALLTVPI 85 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~-~~~~~~~~~~G~l~Dr~Grr~~~~~~~ 85 (443)
.+......++...+........+.+.+| .+.+..+.|++..... ....++.++.|++.||+|+|+.+..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~--------~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~ 281 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD--------AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV 281 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh--------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4444445555555555555666667544 4777788999888776 466777899999999999999988877
Q ss_pred HHhHHHHHHHHhccC---CchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCC-CcchhHHHHHHHHhhhhhhhhhhhh
Q 013411 86 TLSIIPLAILAYSRS---RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP-GRRASVFGIFSGIVSGAFVCGTISA 161 (443)
Q Consensus 86 ~~~~i~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~l~ 161 (443)
.+.++.........+ ....+.+.....+.++ ..+...+...+.+.+..++ +++++.++..+...++|..+||.++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~ 360 (390)
T TIGR02718 282 GLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSL-ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIA 360 (390)
T ss_pred HHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 665333322221111 0113444555566666 6677777777787777776 8899999999999999999999998
Q ss_pred hhh----chhhHHHHHHHHHHHHHH
Q 013411 162 RFI----STSAAFQAATAGSIISAV 182 (443)
Q Consensus 162 ~~~----~w~~~f~~~~~~~~~~~~ 182 (443)
+.+ |++..|.+.+.+.++..+
T Consensus 361 G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 361 GYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHH
Confidence 865 778888887776665443
No 213
>TIGR00898 2A0119 cation transport protein.
Probab=99.11 E-value=6.2e-10 Score=108.56 Aligned_cols=136 Identities=18% Similarity=0.189 Sum_probs=106.3
Q ss_pred HHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCC
Q 013411 55 AIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNV 134 (443)
Q Consensus 55 s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~ 134 (443)
....+....+.++.+++.||+|||+.+.++.++.+++.++..+.++.. .+...+.-++.++ +.+...+..+.+..|.+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~ 439 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL-YFLRTALAVLGKF-GITSAFQMVYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHH-HHHHHHHHHHHHhcccc
Confidence 344566778888899999999999999999999988888887776521 2445555566666 66677788889999999
Q ss_pred CCCcchhHHHHHHHHhhhhhhhhhhhhhhh--chhhHHHHHHHHHHHHHHHHHHhccCCCC
Q 013411 135 PPGRRASVFGIFSGIVSGAFVCGTISARFI--STSAAFQAATAGSIISAVYMRIFLPESVR 193 (443)
Q Consensus 135 ~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~~~~e~~~ 193 (443)
|++.|++++|+.+....+|.+++|.+.+.. ++..++.+.+...++..+.. +++||+..
T Consensus 440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~ 499 (505)
T TIGR00898 440 PTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILT-LFLPETKG 499 (505)
T ss_pred cHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCC
Confidence 999999999999999999999999988732 45567777777666655544 67888654
No 214
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.11 E-value=9e-10 Score=105.37 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=109.9
Q ss_pred CcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHH
Q 013411 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP 84 (443)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~ 84 (443)
+.++.+.+..++...+........+.+.++. ++ +..+.+++.+...++..++.+++++++||+|||+++..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~ 293 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYV-------LG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGG 293 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeee-------cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 3444445555555555444443334443222 12 233567777888999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCC-------CCcchhHHHHHHHHhhhhhhhh
Q 013411 85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVP-------PGRRASVFGIFSGIVSGAFVCG 157 (443)
Q Consensus 85 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g 157 (443)
..+.+++.+...+.++ ..+.+++..++.|+ +.+...+...++++|..| ++++|...++.+....+|..++
T Consensus 294 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg 370 (437)
T TIGR00792 294 ILLMVLGYLIFFFAGS--NLPLILVLIILAGF-GQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALA 370 (437)
T ss_pred HHHHHHHHHHHHHcch--hHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHH
Confidence 8888888777766542 16677778888898 888888889999998875 4567999999999999999999
Q ss_pred hhhhhhh
Q 013411 158 TISARFI 164 (443)
Q Consensus 158 ~~l~~~~ 164 (443)
+.+.+.+
T Consensus 371 ~~i~g~l 377 (437)
T TIGR00792 371 GFLVGLI 377 (437)
T ss_pred HHHHHHH
Confidence 8887764
No 215
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1e-09 Score=97.31 Aligned_cols=146 Identities=13% Similarity=0.144 Sum_probs=126.0
Q ss_pred CcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHH
Q 013411 271 HFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCL 349 (443)
Q Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 349 (443)
+-+..+.|++++...+.+++..+++ |.+.||+|+|..+++|++.+..+.+++++..+.+..+. =.+-|++.+......
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~-G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFF-GNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccc-hhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 5566779999999999999999777 68999999999999999999999999999998886665 456699999999999
Q ss_pred HHHHHhcCCCCc-chhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhhcC
Q 013411 350 RTIVSKQVASNE-QGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIRVA 425 (443)
Q Consensus 350 ~~~~~~~~p~~~-~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
.+++++.+|+|. ||+++|+.-.+..+|-.+||..+|.+++..|. ..+|++.++++++-..+.+...++
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk--------~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGK--------SAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCC--------cCcHHHHHHHHHHHHHHHHheeCc
Confidence 999999999765 69999999999999999999999999999643 346788888888777766665544
No 216
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.09 E-value=1.2e-08 Score=96.50 Aligned_cols=184 Identities=10% Similarity=-0.002 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhh----hcccchHHHHH-HHH
Q 013411 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAP----TVGEARLLSFG-LLF 315 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~-~~~ 315 (443)
+..+....+..++.+.....+.++|+++ +|.++...+.......+...+.+++. |+++| |+|||+..+.. ...
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~-G~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLV-GYLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHe-eehhcCCCCCCCChHHHHHHHHHH
Confidence 3344445555666667777788888865 69999999999999999999999555 79999 59999987764 556
Q ss_pred HHHHHHHHHhhcchh-----------------HHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcc--hhHHhHHhHHHHH
Q 013411 316 GCVHMFLYSVAWSSW-----------------VPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQ--GKAQGCISGICSF 375 (443)
Q Consensus 316 ~~~~~~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~--g~~~g~~~~~~~~ 375 (443)
..+++.++.+..+.+ .... ..+..+......+...+++.|.+|+++| +.+.++.+....+
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~l 163 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAI 163 (477)
T ss_pred HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHH
Confidence 666666666644321 1111 2223446666778889999999998865 6799999999999
Q ss_pred HHHHhHHhHHHH--HHhhhcC-CCCC----ccchhHHHHHHHHHHHHHHHHHHhhcCC
Q 013411 376 ANLVSPLAFSPL--TALFLSD-RAPF----NFPGFSIMCIGFVSMTAFIQSIMIRVAP 426 (443)
Q Consensus 376 g~~~~~~~~g~l--~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (443)
|+.+++.+.+.. .+.++-. .... ......|.+.+++.+++........+++
T Consensus 164 G~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 164 GNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred HHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 999999998865 2221100 0000 0123466777777777777766655443
No 217
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.09 E-value=2.8e-09 Score=99.28 Aligned_cols=175 Identities=16% Similarity=0.205 Sum_probs=136.5
Q ss_pred CcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchh-hhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHH
Q 013411 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECS-LAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV 83 (443)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~ 83 (443)
+.....++..++.......+....+.+.++. + .+....|.+.++..++-...-...+++..|+|.|+++.+
T Consensus 207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~--------gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~ 278 (400)
T PF03825_consen 207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQEL--------GGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLL 278 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4445556667777777888888888887663 3 344556777888888888999999999999999999999
Q ss_pred HHHHhHHHHHHHHhc-cCCchhHHH----HHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHH-Hhhhhhhhh
Q 013411 84 PITLSIIPLAILAYS-RSRNFFYAY----YVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSG-IVSGAFVCG 157 (443)
Q Consensus 84 ~~~~~~i~~~~~~~~-~~~~~~~~l----~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g 157 (443)
+.+..++=..+.+.. ++ .+.. +....++|+ ..+..+.+...++.+.+|++.|+++.++++. ..++|..+|
T Consensus 279 a~~~~~vR~~l~a~~~~~---~~~~~~~~~l~q~lhG~-tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG 354 (400)
T PF03825_consen 279 ALVAYAVRWLLYAYFSDP---WPFIVALQLLGQLLHGL-TFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIG 354 (400)
T ss_pred HHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHH
Confidence 999999998888887 44 3332 334567999 9999999999999999999999999999876 467999999
Q ss_pred hhhhhhh----------chhhHHHHHHHHHHHHHHHHHHhccCC
Q 013411 158 TISARFI----------STSAAFQAATAGSIISAVYMRIFLPES 191 (443)
Q Consensus 158 ~~l~~~~----------~w~~~f~~~~~~~~~~~~~~~~~~~e~ 191 (443)
..++|++ .|...+.+.+.+.++..++..++.||+
T Consensus 355 ~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 355 SLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9998876 234456666666666666666666664
No 218
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.08 E-value=6.6e-09 Score=96.46 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HH
Q 013411 258 LQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AA 336 (443)
Q Consensus 258 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 336 (443)
....+|.+.+ .+|+++.+.++..+...++..++.++. |++.||+|||+.+..+..+..++.+.. ..++.+.... ..
T Consensus 19 ~~~~lp~l~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~-g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 95 (355)
T TIGR00896 19 VGPLLPQIRS-ALGMSFSVAGLLTALPVLCFAVLAPLA-PWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA 95 (355)
T ss_pred CcccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhH-HHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 3445566555 569999999999999999999999555 799999999999999888877776665 4455444433 45
Q ss_pred HHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 337 VFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
+.+++.+...+.......|.+| ++|+++.++.+....+|..+++.+.+.+.+..
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 149 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS 149 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5577777767777778888886 68999999999999999999999999888763
No 219
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.08 E-value=1.5e-08 Score=98.67 Aligned_cols=117 Identities=15% Similarity=0.064 Sum_probs=97.3
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcc------hhHHHH-HHHHHHhhhh
Q 013411 272 FNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS------SWVPYA-AAVFSILSVF 344 (443)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~ 344 (443)
.+..+.+.+.+...++..++.++. +++.||+|||+.+..+.++..++.++.....+ .+..+. -++.|++.+.
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~-g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 131 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFF-GWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGG 131 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhh
Confidence 445567888999999999999555 79999999999999998888888777666543 223333 5666888999
Q ss_pred hhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHH
Q 013411 345 SHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTA 389 (443)
Q Consensus 345 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 389 (443)
..+....+++|.+|+++||++.++.+....+|..+++.+...+..
T Consensus 132 ~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~ 176 (502)
T TIGR00887 132 DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLA 176 (502)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877654
No 220
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.07 E-value=1.3e-08 Score=94.59 Aligned_cols=160 Identities=13% Similarity=0.164 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhc-----ccchH-HHHHHHHHHHHHHHHHhhcc---
Q 013411 258 LQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV-----GEARL-LSFGLLFGCVHMFLYSVAWS--- 328 (443)
Q Consensus 258 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~--- 328 (443)
.....|.+.++. |+|..+.|..... .+...+ .++. |.+.||+ ||||. +..+.+..++....+.+..+
T Consensus 7 ~~~~~~~~~~~~-g~s~~~~g~~~~~-~~~~~~-~~~~-g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 7 VGNTLPYWLRSK-NVSLKTIGFFSLV-GLPYSL-KFLW-SPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred HHhHHHHHHHHc-CCCHHHHHHHHHH-HHHHHH-HHHH-HHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 344567777765 9999999988644 444444 5344 7899997 78886 45666666666655655532
Q ss_pred hhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHH
Q 013411 329 SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMC 407 (443)
Q Consensus 329 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 407 (443)
.+.... .++.+.+.+...+...+++.|.+|+|+|+.+.|+......+|..+++.+.+.+.+..+.+..........+++
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i 162 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW 162 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence 222222 3344566666778899999999999999999999999999999999999999887754211000012345566
Q ss_pred HHHHHHHHHHHHHH
Q 013411 408 IGFVSMTAFIQSIM 421 (443)
Q Consensus 408 ~~~~~~~~~~~~~~ 421 (443)
.++..++.....+.
T Consensus 163 ~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 163 TALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555544443
No 221
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.06 E-value=1.1e-09 Score=98.42 Aligned_cols=177 Identities=15% Similarity=0.206 Sum_probs=136.7
Q ss_pred CCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhH
Q 013411 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT 82 (443)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~ 82 (443)
+++++...+++.++..=+.+-....-..+. ..+++++..+..++....++..+++++++|++.||+|.|+++.
T Consensus 250 ~~~~i~~FLiA~~~~~DGv~til~~~~~fg-------~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~ 322 (438)
T COG2270 250 GRKNLVLFLIARFFYIDGVNTILAMGGVFG-------AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLM 322 (438)
T ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeh
Confidence 344555555555554444444433333442 3468999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhh
Q 013411 83 VPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR 162 (443)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~ 162 (443)
.+.++..+..+..-+... -..+.++-.+.|. ..|..+..+.++..+..|+++-++.+|+++...-.+..+||.+-+
T Consensus 323 ~~lvi~~~~~~~~~~~~~---~~~f~i~gll~g~-s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~ 398 (438)
T COG2270 323 IGLVILSIAALYLIFLEG---ELDFWILGLLVGT-SLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVA 398 (438)
T ss_pred HHHHHHHHHHHHHHHccc---cHHHHHHHHHHHH-hcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHH
Confidence 999998888877777666 4566777788898 889999999999999999999999999999999999999998877
Q ss_pred hh-----chhhHHHHHHHHHHHHHHHHHHhccCC
Q 013411 163 FI-----STSAAFQAATAGSIISAVYMRIFLPES 191 (443)
Q Consensus 163 ~~-----~w~~~f~~~~~~~~~~~~~~~~~~~e~ 191 (443)
.+ +-|..+....++..+..+ ....+|++
T Consensus 399 v~t~iTg~~r~g~~~i~vll~iGl~-~L~~v~~~ 431 (438)
T COG2270 399 VITQITGSSRAGVLSIIVLLLIGLL-LLLRVKVP 431 (438)
T ss_pred HHHHHhcchhhHHHHHHHHHHhhHh-hEEeecCC
Confidence 65 356666666655555333 33556654
No 222
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.06 E-value=1.3e-09 Score=116.83 Aligned_cols=165 Identities=15% Similarity=0.062 Sum_probs=125.0
Q ss_pred CCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHH
Q 013411 4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV 83 (443)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~ 83 (443)
++.++.+.+..++..+..+.....+|.|+.+. ++.+..+.|++.+.+.++.++++++.|+++||.++++.+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~ 296 (1140)
T PRK06814 224 DKRIWLAILGISWFWLVGAVVLSQLPLLAKET-------LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPI 296 (1140)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehH
Confidence 34444455555555555555556778887663 56677889999999999999999999999999888877776
Q ss_pred HHHHhHHHHHHHHhc--------------------cCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHH
Q 013411 84 PITLSIIPLAILAYS--------------------RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVF 143 (443)
Q Consensus 84 ~~~~~~i~~~~~~~~--------------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~ 143 (443)
+.++.++..+...+. .+ .+.+++..++.|+ +.+...+...+++.+.+|+++||+++
T Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~G~v~ 372 (1140)
T PRK06814 297 GALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH---GWRILIDLFGLAA-AGGLYIVPLFAALQAWANPAHRARVI 372 (1140)
T ss_pred HHHHHHHHHHHHHhcccccccccccccchhhhhcccc---cHHHHHHHHHHHH-HHHHhHHHHHHHHHhhCCcccceeee
Confidence 666666555544443 44 6778888999999 88888888999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhh-----chhhHHHHHHHHHHH
Q 013411 144 GIFSGIVSGAFVCGTISARFI-----STSAAFQAATAGSII 179 (443)
Q Consensus 144 ~~~~~~~~~g~~~g~~l~~~~-----~w~~~f~~~~~~~~~ 179 (443)
|..+....+|..+|+++.+.+ +....+++.+.+.++
T Consensus 373 g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 373 AANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLI 413 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 999999999999998887765 344555554444333
No 223
>PRK15075 citrate-proton symporter; Provisional
Probab=99.03 E-value=1.8e-08 Score=96.20 Aligned_cols=147 Identities=14% Similarity=0.038 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHH-HHH-----HHHHHHHHHHHHHHhhhhcccchHHHHHHH
Q 013411 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLM-VIA-----GIAGTISQLIMMPVLAPTVGEARLLSFGLL 314 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 314 (443)
.....+..++...-...+....|...+ .++.++.+.+... +.. .+...+++++. |++.||+|||+.+..+..
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~-G~l~Dr~Grr~~l~~~~~ 94 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAK-TFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVL-GAYIDRVGRRKGLIVTLS 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHH-HHHhhhhchHHHHHHHHH
Confidence 344555556666555666666665544 4687776644332 211 12223556444 799999999999999999
Q ss_pred HHHHHHHHHHhhcchhH---------HHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHH
Q 013411 315 FGCVHMFLYSVAWSSWV---------PYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFS 385 (443)
Q Consensus 315 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g 385 (443)
+..++..+..+.++.+. ...-++.|++.+...+....++.|.+|+++|+++.++.+...+++..+++.+.+
T Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~ 174 (434)
T PRK15075 95 IMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGY 174 (434)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888876542 122345577777778888899999999999999999999998888888888877
Q ss_pred HHHH
Q 013411 386 PLTA 389 (443)
Q Consensus 386 ~l~~ 389 (443)
.+..
T Consensus 175 ~l~~ 178 (434)
T PRK15075 175 LLNQ 178 (434)
T ss_pred HHHH
Confidence 7654
No 224
>PRK09848 glucuronide transporter; Provisional
Probab=99.02 E-value=2.4e-09 Score=102.64 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=110.9
Q ss_pred CCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHH
Q 013411 4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV 83 (443)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~ 83 (443)
++.+....+..++...+........|.+.++. ++.+....++......++..++.++++++.||+|+|+.+.+
T Consensus 227 n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~ 299 (448)
T PRK09848 227 NRPLFMLCIGALCVLISTFAVSASSLFYVRYV-------LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLI 299 (448)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhheeeEeee-------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 34455555555555555555554555554432 34444444555555567788899999999999999999999
Q ss_pred HHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCC-------cchhHHHHHHHHhhhhhhh
Q 013411 84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPG-------RRASVFGIFSGIVSGAFVC 156 (443)
Q Consensus 84 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~ 156 (443)
+.++..++.++..+.++. .++.+++..++.|+ |.+...+...++..|..|++ ++|...+..+....+|..+
T Consensus 300 g~~~~~i~~~~~~~~~~~-~~~~~~~~~~l~g~-G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~ai 377 (448)
T PRK09848 300 GALLGTCGYLLFFWVSVW-SLPVALVALAIASI-GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAI 377 (448)
T ss_pred HHHHHHHHHHHHHHcCch-hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHH
Confidence 998888888777765421 16677777888998 88999999999999988754 3588899999999999999
Q ss_pred hhhhhhhh
Q 013411 157 GTISARFI 164 (443)
Q Consensus 157 g~~l~~~~ 164 (443)
|+.+.+.+
T Consensus 378 g~~i~g~~ 385 (448)
T PRK09848 378 GGSIPAFI 385 (448)
T ss_pred HHHHHHHH
Confidence 88777653
No 225
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.00 E-value=7.2e-09 Score=95.01 Aligned_cols=164 Identities=10% Similarity=0.059 Sum_probs=132.1
Q ss_pred cccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCC
Q 013411 22 SMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSR 101 (443)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~ 101 (443)
+....-.|.|..+.. ++-+.+....|++.+...+.-++...+..++.+|+|.|+.++++..+.++=..+++++++
T Consensus 237 ~vfdqqf~~y~~~~f----~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~- 311 (412)
T PF01306_consen 237 DVFDQQFPIYFASFF----QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATN- 311 (412)
T ss_dssp HHHHHHHHHHHHHTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--S-
T ss_pred HHHHHHHHHHHHHHh----cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcc-
Confidence 333333566666642 234566678999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHH-HHHhhhhhhhhhhhhhhh----chhhHHHHHHHH
Q 013411 102 NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIF-SGIVSGAFVCGTISARFI----STSAAFQAATAG 176 (443)
Q Consensus 102 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~ 176 (443)
.+.+.+.+.+.|+ ..+........|+++.+|+|...+...+. +...++|..+.+.++|.+ |.+..|++.+.+
T Consensus 312 --~~~i~~~klLH~~-e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~i 388 (412)
T PF01306_consen 312 --PWVISLIKLLHAL-EFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLI 388 (412)
T ss_dssp --HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHH
Confidence 9999999999999 98999999999999999988877777764 677888888888888775 678889999988
Q ss_pred HHHHHHHHHHhccCCCC
Q 013411 177 SIISAVYMRIFLPESVR 193 (443)
Q Consensus 177 ~~~~~~~~~~~~~e~~~ 193 (443)
.+...++..+.++++++
T Consensus 389 v~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 389 VLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHS--SSS
T ss_pred HHHHHHHheeeecCCCc
Confidence 88777777777776544
No 226
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.98 E-value=5e-08 Score=87.28 Aligned_cols=141 Identities=15% Similarity=0.004 Sum_probs=116.3
Q ss_pred HHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhc-
Q 013411 249 FLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW- 327 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (443)
|+.+......+..+.+.+++.++.+..+++.+......+..+..++. +++.+|+|+|+-++.+..++++++.++.-..
T Consensus 22 Ffl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa-~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~ 100 (422)
T COG0738 22 FFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPA-GLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS 100 (422)
T ss_pred HHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccH-HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33333344556667778889999999999999998888888888555 7999999999999999999999998886433
Q ss_pred --chhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 328 --SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 328 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
+....+. .++.+.+.+......++++..+-|++....-+.+.+.++.+|.+++|.+.+.+..+
T Consensus 101 ~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 101 SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 2223333 45667888888999999999999998888999999999999999999999999884
No 227
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=98.95 E-value=6.1e-08 Score=84.43 Aligned_cols=356 Identities=15% Similarity=0.115 Sum_probs=208.1
Q ss_pred HHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcc
Q 013411 60 GTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRR 139 (443)
Q Consensus 60 ~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r 139 (443)
.+.+.-.+.=.+.|-.-.|++++.-.+.......+..+.++ .+.+=+.-++.|. ..+ ...+-++++-+..+++++
T Consensus 54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~s---V~~mQvlE~FyG~-~tA-aEIAYysYIYs~Vd~~~Y 128 (433)
T KOG3810|consen 54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPS---VKAMQVLEFFYGP-ATA-AEIAYYSYIYSKVDPEMY 128 (433)
T ss_pred HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCC---chheeeehhhcCh-HHH-HHHhhhheeeeecCHHHH
Confidence 34555556667889888899988877777777788888999 8888889999998 544 446789999999999999
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhhhh---ch---hhHHHHHHHHHHHHHHHHHHhccCCCCcccc-ccccccchhhhhhhh
Q 013411 140 ASVFGIFSGIVSGAFVCGTISARFI---ST---SAAFQAATAGSIISAVYMRIFLPESVRDEDL-YTPILSSKAEISASC 212 (443)
Q Consensus 140 ~~~~~~~~~~~~~g~~~g~~l~~~~---~w---~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~ 212 (443)
.++.+...++.-.|...|..++..+ +| ...=.+.-. ..........++|..++..-- ++..+....+.++..
T Consensus 129 qrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~-~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~ 207 (433)
T KOG3810|consen 129 KRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLA-EVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMN 207 (433)
T ss_pred HHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHH-HHHHHHHHHhhCCCCchhhhhhcccccceeccchhcC
Confidence 9999999999999999888888775 22 222122222 222233344777776542110 000011100000000
Q ss_pred hhhhhhhhhc-ccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcC-hhhHHHHHHHHHHHHHH
Q 013411 213 EESTKKLQVF-KRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFN-KNQFADLMVIAGIAGTI 290 (443)
Q Consensus 213 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~ 290 (443)
.+.+..+..+ ....-++++.+.. ++|.+....+=..+....++....+....-++.-.-+ ..-.|..-+...+.+.+
T Consensus 208 ~~~~~~~~l~~~~~~l~~~l~~~y-~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~ 286 (433)
T KOG3810|consen 208 PQASYMSYLRGAFVLLWRDLQECY-SNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAI 286 (433)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHh-cCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHH
Confidence 0000000000 0000122333333 4555444443333444444444444444444431111 11235555666666777
Q ss_pred HHHHHHHHhhhhcccc--hHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHh
Q 013411 291 SQLIMMPVLAPTVGEA--RLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQG 367 (443)
Q Consensus 291 ~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g 367 (443)
+. +..|.+--++.|. .++.++....+...+.+....+.|..++ .+++...+....++....+++....|.-|-.+|
T Consensus 287 ~~-~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFG 365 (433)
T KOG3810|consen 287 AA-LAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFG 365 (433)
T ss_pred HH-HHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeee
Confidence 77 3436665444443 3445555555666666777778887777 566677777777888888888888899999999
Q ss_pred HHhHHHHHHHHHhHHhHHHHHHhhh---cCCCCCccchhHHHHHHHHHHHHHHHHHHhhcCC
Q 013411 368 CISGICSFANLVSPLAFSPLTALFL---SDRAPFNFPGFSIMCIGFVSMTAFIQSIMIRVAP 426 (443)
Q Consensus 368 ~~~~~~~~g~~~~~~~~g~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (443)
+++++.-+-..+-..+ +.|..+ .....+...+..+++.+++.++.....+...++.
T Consensus 366 iNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~~ 424 (433)
T KOG3810|consen 366 INTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLMCRRN 424 (433)
T ss_pred hHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHHhhcC
Confidence 9988866555444433 333221 1222333345577888888887776665555443
No 228
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.94 E-value=4.4e-08 Score=94.47 Aligned_cols=146 Identities=18% Similarity=0.159 Sum_probs=107.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhh----hccc-chHHHHHHHHHHHHH
Q 013411 246 IVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAP----TVGE-ARLLSFGLLFGCVHM 320 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~-~~~~~~~~~~~~~~~ 320 (443)
+..+..++.......+++.|+.+.+|.++..+|.++.+.-+...+..++. |.++| |+|| |+.+..+....++++
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~-G~lsD~t~sr~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIM-GWIVNNTRSRWGKFKPWILIGTLANSVVL 91 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchh-eeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence 34444555666677889999999999999999999999999999999666 79999 4587 556667777777776
Q ss_pred HHHHhhcch-------hHHHHHHHHHHhhhhhhhHHHHHHHhcC-CCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhh
Q 013411 321 FLYSVAWSS-------WVPYAAAVFSILSVFSHPCLRTIVSKQV-ASNEQGKAQGCISGICSFANLVSPLAFSPLTALFL 392 (443)
Q Consensus 321 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 392 (443)
.++...++. +.....+++..++........++..|.. ++++|.+..+.......+|+.+.+.+..++.+..+
T Consensus 92 ~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g 171 (473)
T PRK10429 92 FLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVG 171 (473)
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 655443311 1111233445667777788889999988 58899999998788888887777777666655443
No 229
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.93 E-value=9.4e-08 Score=92.00 Aligned_cols=119 Identities=17% Similarity=0.151 Sum_probs=86.7
Q ss_pred HHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhh
Q 013411 265 YLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSV 343 (443)
Q Consensus 265 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 343 (443)
+.....|-++. ..++.....+...+..++. |+++|.+|||+.++.+.++..++.++....++....+. ..+.|++.+
T Consensus 69 ~I~~diG~~~~-~~w~~~~~~l~~av~~~~~-G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG 146 (599)
T PF06609_consen 69 YINADIGGSDN-WSWFSTAWTLASAVSFPFV-GRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAG 146 (599)
T ss_pred HHHHhcCCCcc-chHHHHHHHHHHHHHHHhh-HHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhH
Confidence 33344576654 4677777888888888666 79999999999999999999999999999888776666 666677765
Q ss_pred hhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHH
Q 013411 344 FSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSP 386 (443)
Q Consensus 344 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 386 (443)
... .....++|..|.+.|..+.++.....-.....+|.+...
T Consensus 147 ~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~ 188 (599)
T PF06609_consen 147 VQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQL 188 (599)
T ss_pred HHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHH
Confidence 554 445568999999999877766654433333344444443
No 230
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.91 E-value=2.9e-08 Score=92.98 Aligned_cols=153 Identities=15% Similarity=0.147 Sum_probs=111.7
Q ss_pred hhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccC---Cc--hh-HHHHHHHHhhhh
Q 013411 43 CSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRS---RN--FF-YAYYVLRTLTAM 116 (443)
Q Consensus 43 ~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~---~~--~~-~~l~~~r~l~G~ 116 (443)
.+++..+.-+..........+..+++..+.||+|||+.++.+..+..+..+++..... .. +. +..+++.++..+
T Consensus 300 aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~ 379 (485)
T KOG0569|consen 300 AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFII 379 (485)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4556666778888888889999999999999999999999999998888777664421 10 01 122344444444
Q ss_pred hccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhh----hhhhhhhchhhHHHHHHHHHHHHHHHHHHhccCCC
Q 013411 117 VCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCG----TISARFISTSAAFQAATAGSIISAVYMRIFLPESV 192 (443)
Q Consensus 117 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g----~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~e~~ 192 (443)
+..-+..|...-+.+|.+|++.|..++++.....-+...+- |++-..+|- +.|.+..+.+++..+..++.+||++
T Consensus 380 ~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 380 SFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred hhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 22233457888999999999999999998877776665443 455555565 7777778888888888999999997
Q ss_pred Cccc
Q 013411 193 RDED 196 (443)
Q Consensus 193 ~~~~ 196 (443)
.+..
T Consensus 459 gr~~ 462 (485)
T KOG0569|consen 459 GRTP 462 (485)
T ss_pred CCCH
Confidence 6543
No 231
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.91 E-value=8.3e-09 Score=98.73 Aligned_cols=172 Identities=18% Similarity=0.257 Sum_probs=143.6
Q ss_pred CcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccc--cchhhH
Q 013411 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYG--RKALLT 82 (443)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~G--rr~~~~ 82 (443)
+....+.+...+..++.....-.+|.+.++ .+.+..+...+.++..+...++.+..|+++|+.. ++.+..
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~--------~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~ 369 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKS--------LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFL 369 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHH
Confidence 445556667777777777777777877554 5666778899999999999999999999999988 455677
Q ss_pred HHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhh
Q 013411 83 VPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR 162 (443)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~ 162 (443)
++.+..+++...++++++ ++.++....+.|+ ..|.........+.|..+.++-..+.|+.....+++.++||++++
T Consensus 370 ~~ll~~gl~~~~~p~~~~---~~~l~~~~~~fG~-~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag 445 (509)
T KOG2504|consen 370 LTLLIAGLARLFLPFATT---YVGLIVFSILFGF-CVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG 445 (509)
T ss_pred HHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence 788888888889999999 9999999999999 888887777789999999999999999999999999999999999
Q ss_pred hh-----chhhHHHHHHHHHHHHHHHHHHhcc
Q 013411 163 FI-----STSAAFQAATAGSIISAVYMRIFLP 189 (443)
Q Consensus 163 ~~-----~w~~~f~~~~~~~~~~~~~~~~~~~ 189 (443)
.+ +|...|+..+...++..... +..|
T Consensus 446 ~~~d~tg~Y~~~f~~~g~~~~~s~~~~-~~~~ 476 (509)
T KOG2504|consen 446 LLYDITGNYDHAFYFCGLCFLLSAVLL-LILR 476 (509)
T ss_pred eeeeccCCeeeehhhcChHHHHHHHHH-HHhH
Confidence 76 47888988888777755433 4444
No 232
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.90 E-value=1.5e-08 Score=91.54 Aligned_cols=152 Identities=10% Similarity=0.018 Sum_probs=111.1
Q ss_pred HHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHH
Q 013411 12 ITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIP 91 (443)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~ 91 (443)
+..++............+.|..+ .++++.+..+.++..+.+..+..++.+..+++.||+|+||.+.++..+..++
T Consensus 147 ~~~f~yvg~e~~~~~w~~~yl~~-----~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~ 221 (310)
T TIGR01272 147 LGIFVYVGAEVSAGSFLVNFLSD-----PHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLL 221 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 33333333455555667777754 2346778889999999999999999999999999999999988888888777
Q ss_pred HHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh----chh
Q 013411 92 LAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STS 167 (443)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~ 167 (443)
.++....++ ... ...-++.|+ +.+..+|...+...+..|+ +.+++.++. ....+|..++|.+.+.+ +.+
T Consensus 222 ~~l~~~~~~---~~~-~~~~~l~g~-~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~ 294 (310)
T TIGR01272 222 SIGAALTHG---YVA-MWFVLALGL-FNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQ 294 (310)
T ss_pred HHHHHHcCC---HHH-HHHHHHHHH-HHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccch
Confidence 766655554 332 235557888 8899999999999888874 455666665 55668889999877665 456
Q ss_pred hHHHHHHH
Q 013411 168 AAFQAATA 175 (443)
Q Consensus 168 ~~f~~~~~ 175 (443)
..|++..+
T Consensus 295 ~a~~v~~~ 302 (310)
T TIGR01272 295 LAFALPVP 302 (310)
T ss_pred HHHHHHHH
Confidence 66664443
No 233
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.90 E-value=2.2e-08 Score=95.43 Aligned_cols=150 Identities=16% Similarity=0.227 Sum_probs=125.3
Q ss_pred CCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhH
Q 013411 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT 82 (443)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~ 82 (443)
++|.+..++...++..++..+.....+.+.++....+ ...+.+..+..++..++.+++++++||+|+|+.+.
T Consensus 223 ~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~--------~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~ 294 (428)
T PF13347_consen 223 RNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE--------GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYI 294 (428)
T ss_pred ccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehh
Confidence 4566777888888888888888888888877753222 24577888999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhcc--CCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCC-------cchhHHHHHHHHhhhh
Q 013411 83 VPITLSIIPLAILAYSR--SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPG-------RRASVFGIFSGIVSGA 153 (443)
Q Consensus 83 ~~~~~~~i~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g 153 (443)
.+..+.+++.++..+.+ + .+.+++.-++.|+ +.+...+...++++|..+.+ +.|..++..+....+|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~l~gi-~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~ 370 (428)
T PF13347_consen 295 IGLLLAALGFLLLFFLGPGS---PWLVLILFILAGI-GYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG 370 (428)
T ss_pred hhHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhHh-hhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence 99999999999888876 6 8999999999999 99999999999999999743 3478888888888888
Q ss_pred hhhhhhhhhhh
Q 013411 154 FVCGTISARFI 164 (443)
Q Consensus 154 ~~~g~~l~~~~ 164 (443)
..+++.+.+.+
T Consensus 371 ~~la~~i~g~~ 381 (428)
T PF13347_consen 371 QGLAGAIVGLL 381 (428)
T ss_pred HHHHHHHHHHH
Confidence 88887766643
No 234
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.88 E-value=2.3e-08 Score=83.84 Aligned_cols=317 Identities=12% Similarity=0.040 Sum_probs=161.6
Q ss_pred HHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHH
Q 013411 12 ITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIP 91 (443)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~ 91 (443)
...++...+.....|.+-.... +.+....++|.+..+..-..++...+.|.++||-|||+.-+. +.+.
T Consensus 44 lVyslmmAgDWLQgPYvYyLYs--------tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvt----ycit 111 (454)
T KOG4332|consen 44 LVYSLMMAGDWLQGPYVYYLYS--------TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT----YCIT 111 (454)
T ss_pred HHHHHHHhhhhhcCceeeeeeh--------hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceee----ehHH
Confidence 3444555566666666433322 223333346666666667777888889999999999996444 4444
Q ss_pred HHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhh-hhcCCCCCcchhHHHHHHHHhh----hhhhhhhhhhhhh--
Q 013411 92 LAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAY-VADNVPPGRRASVFGIFSGIVS----GAFVCGTISARFI-- 164 (443)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~-i~~~~~~~~r~~~~~~~~~~~~----~g~~~g~~l~~~~-- 164 (443)
.+++......+.+-.++++|.+.|+ ..+..+.+-.++ +.|+.+ +|+.---+....++ .|.-+-.++++..
T Consensus 112 YiLsCiTKhSpqYkVLmVGR~LGGi-aTsLLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn 188 (454)
T KOG4332|consen 112 YILSCITKHSPQYKVLMVGRVLGGI-ATSLLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGN 188 (454)
T ss_pred HHHHHHhhcCCceEEEeehhhhhhH-HHHHHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHH
Confidence 4444444333338999999999999 888877777765 567663 44433333322222 2222222333322
Q ss_pred --------chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhc
Q 013411 165 --------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLK 236 (443)
Q Consensus 165 --------~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (443)
|.-.+|-..+.+..+...+..--..|.-.+.. +.+.-....+...+.+.
T Consensus 189 ~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdps-----------------------~~kdlltqf~gaa~aia 245 (454)
T KOG4332|consen 189 LLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPS-----------------------ENKDLLTQFKGAARAIA 245 (454)
T ss_pred HHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCChh-----------------------hhHHHHHHhhHhHHHHh
Confidence 33345544443333322222222222211111 00000011222222222
Q ss_pred cChhhHHHHHHHHHHHhhhhhh-HHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc--chHHHHHH
Q 013411 237 SSPTFSQAAIVAFLSNLADAGL-QGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGE--ARLLSFGL 313 (443)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~ 313 (443)
.++++..+-.+..+.-...+.+ ..|.|..-....+. --|.+++......++++-+. .++..|-.. ...+.+.+
T Consensus 246 SD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~i---PhGfiFatFMlASmLGSSla-~Rl~s~s~~~ve~ymqivf 321 (454)
T KOG4332|consen 246 SDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI---PHGFIFATFMLASMLGSSLA-SRLLSRSSPKVESYMQIVF 321 (454)
T ss_pred cchHHHHHHHHHHHHhhhhheeeeeecccCCCCcccC---CchhHHHHHHHHHHHhhHHH-HHHHhcCCcccchHHHHHH
Confidence 3333332222222221111111 11222211111111 14778888888888888555 355544333 24555555
Q ss_pred HHHHHHHHHHHhhc----c---h-hHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHh
Q 013411 314 LFGCVHMFLYSVAW----S---S-WVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCIS 370 (443)
Q Consensus 314 ~~~~~~~~~~~~~~----~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 370 (443)
.+..+.+.+..... + + ...+..+++-.+.+..+|...-+-.+..|++.|++.+-...
T Consensus 322 ~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 322 LVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred HHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhhee
Confidence 55555544433322 1 1 12333556677888899999999999999999987665543
No 235
>PRK09669 putative symporter YagG; Provisional
Probab=98.88 E-value=5.4e-08 Score=93.19 Aligned_cols=143 Identities=11% Similarity=0.084 Sum_probs=104.3
Q ss_pred HHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh----ccc-chHHHHHHHHHHHHHHHH
Q 013411 249 FLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT----VGE-ARLLSFGLLFGCVHMFLY 323 (443)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~-~~~~~~~~~~~~~~~~~~ 323 (443)
+..+........++++|+.+.+|+|+..+|.++.+.-+...+..++. |+++|| +|| |+.+..+.+..+++..+.
T Consensus 19 ~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~-G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~ 97 (444)
T PRK09669 19 TACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLM-GALVDRTRTRHGQFRPYLLWFAIPFGVVCLLT 97 (444)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccccee-eEeeecCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence 33444455567788999999999999999999999999999999665 799998 566 455656666666666555
Q ss_pred Hhhcch------hHHH-HHHHHHHhhhhhhhHHHHHHHhcC-CCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhh
Q 013411 324 SVAWSS------WVPY-AAAVFSILSVFSHPCLRTIVSKQV-ASNEQGKAQGCISGICSFANLVSPLAFSPLTALFL 392 (443)
Q Consensus 324 ~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 392 (443)
...++. +... ...++..+.........++..|.. ++++|++..+.......+|..+++.+..++....+
T Consensus 98 f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~ 174 (444)
T PRK09669 98 FYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILG 174 (444)
T ss_pred HhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444321 1111 233445556666667778888887 45789999999999999999999888877776653
No 236
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.86 E-value=9.3e-07 Score=87.22 Aligned_cols=141 Identities=13% Similarity=0.103 Sum_probs=107.4
Q ss_pred hhhhHHHHHHHHHHHhHHHHHhhhcccccccc-cccchhhHHHHHHhHHHHHHHHhccCC-----chhHHHHHHHHhhhh
Q 013411 43 CSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK-YGRKALLTVPITLSIIPLAILAYSRSR-----NFFYAYYVLRTLTAM 116 (443)
Q Consensus 43 ~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~l~~~r~l~G~ 116 (443)
++.+......+...+....-+..+++|.++|+ +||++.+.++.++..++..+.+++... ......+++-.+..+
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 45555566677777777778888999999996 599999999999999998888765321 112335566677777
Q ss_pred hccchhhhhhhhhhhcCCCCCc---chhHHHHHHHHhhhhhhhhhhhhhhh-----------chhhHHHHHHHHHHHHHH
Q 013411 117 VCEGSIHCLSLAYVADNVPPGR---RASVFGIFSGIVSGAFVCGTISARFI-----------STSAAFQAATAGSIISAV 182 (443)
Q Consensus 117 ~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~l~~~~-----------~w~~~f~~~~~~~~~~~~ 182 (443)
|.|.+-|+..+...|.+++++ |.+.+.++..+.++|.++++.+..++ +|+..|.+.++..++..+
T Consensus 98 -G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~l 176 (654)
T TIGR00926 98 -GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALI 176 (654)
T ss_pred -hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHH
Confidence 889999999999999997653 66778888889999998887766544 388888888887777655
Q ss_pred HH
Q 013411 183 YM 184 (443)
Q Consensus 183 ~~ 184 (443)
..
T Consensus 177 vf 178 (654)
T TIGR00926 177 VF 178 (654)
T ss_pred HH
Confidence 44
No 237
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.81 E-value=1.2e-06 Score=75.29 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=108.6
Q ss_pred CcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccC----CchhHHHHHHHHhhh
Q 013411 40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRS----RNFFYAYYVLRTLTA 115 (443)
Q Consensus 40 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~----~~~~~~l~~~r~l~G 115 (443)
+++++.|..|...+.++..+|..+ .++.|.+.|++|+|.++.++.+...+|..+...+.+ ..++|.+.+..++.|
T Consensus 29 k~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~ 107 (250)
T PF06813_consen 29 KSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGG 107 (250)
T ss_pred HHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHc
Confidence 446888889999999999999987 488999999999999999999999999877665422 123788888888888
Q ss_pred hhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh-c-h-hhHHHHHHHHHHHHHHHHHHhccCCC
Q 013411 116 MVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-S-T-SAAFQAATAGSIISAVYMRIFLPESV 192 (443)
Q Consensus 116 ~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-~-w-~~~f~~~~~~~~~~~~~~~~~~~e~~ 192 (443)
. +.+....+......+.+| ++||++.|+.-...+++..+-..+...+ + . ..-+++.+....+..+....++++.|
T Consensus 108 ~-s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 108 N-SSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred c-cHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 7 766666666666778887 6899999999999998877755554443 2 2 22233333333333333445555544
Q ss_pred C
Q 013411 193 R 193 (443)
Q Consensus 193 ~ 193 (443)
+
T Consensus 186 ~ 186 (250)
T PF06813_consen 186 P 186 (250)
T ss_pred C
Confidence 3
No 238
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.80 E-value=1.4e-07 Score=85.51 Aligned_cols=162 Identities=20% Similarity=0.283 Sum_probs=122.1
Q ss_pred hHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhH
Q 013411 10 LFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSI 89 (443)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~ 89 (443)
.....+....+.....+..+.+..+...... . .+.++..+.+.++..+++++.|+++||+|||+.+..+.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 80 (338)
T COG0477 7 LALAALLLGLDLGLLSPALPLLLSTLSLSSG-----R-LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFL 80 (338)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHcCCCch-----h-HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHH
Confidence 3444455556666666777777655311110 0 467899999999999999999999999999988888887656
Q ss_pred HHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCC-CcchhHHHHHHH-Hhhhhhhhhhhhhhhh---
Q 013411 90 IPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP-GRRASVFGIFSG-IVSGAFVCGTISARFI--- 164 (443)
Q Consensus 90 i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~l~~~~--- 164 (443)
++.+...+..+ ...+.+++.|+.+|+ +.+...+...+++.|+.|+ ++|+...+.... ...+|..++|.+++.+
T Consensus 81 ~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 81 LGTLLLALAPN-VGLALLLILRLLQGL-GGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHhCcc-chHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655 338999999999999 8888999999999999997 688999998888 5778888888776544
Q ss_pred ---chhhHHHHHHHHHHH
Q 013411 165 ---STSAAFQAATAGSII 179 (443)
Q Consensus 165 ---~w~~~f~~~~~~~~~ 179 (443)
+||..|.........
T Consensus 159 ~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 159 LLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HhcchHHHHHHHHHHHHH
Confidence 688866655554443
No 239
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.79 E-value=1.6e-08 Score=96.90 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=102.8
Q ss_pred cchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhc----------cCCchhHHHHHH
Q 013411 41 DECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYS----------RSRNFFYAYYVL 110 (443)
Q Consensus 41 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~l~~~ 110 (443)
..++.++.+.|++.....++.+++....+++.+|++.|+++.++.++.+++....... ++ .+.++..
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~---~~~~~~~ 357 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISD---EVFVLGD 357 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCC---eeeeeeh
Confidence 4578899999999999999999999999999999999999999999998887654321 22 3455666
Q ss_pred HHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh
Q 013411 111 RTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI 164 (443)
Q Consensus 111 r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~ 164 (443)
-++.++ +.+....+...++.+.+|+++++...++.+...++|..+++.+++.+
T Consensus 358 ~~l~~~-~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l 410 (468)
T TIGR00788 358 SIIAEV-LAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL 410 (468)
T ss_pred hHHHHH-HHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888 77788888899999999999999999999999999999999877765
No 240
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.76 E-value=1.2e-07 Score=89.81 Aligned_cols=122 Identities=12% Similarity=0.112 Sum_probs=108.0
Q ss_pred HHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcch--hHHH-HHHHHHHhhhh
Q 013411 268 AKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSS--WVPY-AAAVFSILSVF 344 (443)
Q Consensus 268 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~ 344 (443)
..+++++.+-+++++....+.++++++. +++.||+|.|+++..+.++.++..++..+..+. +..+ .-++.|++.+.
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~-g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPG-GYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCc-HHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 3578999999999999999999999555 799999999999999999999998888876642 3222 35667999999
Q ss_pred hhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 345 SHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 345 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
.+|....+..+-.|+++|++..++.....++|.+++-.+.|.+.+.
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s 190 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES 190 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 9999999999999999999999999999999999999999999888
No 241
>PRK11462 putative transporter; Provisional
Probab=98.70 E-value=1.2e-06 Score=84.08 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=109.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh----cccc-hHHHHHHHHHHHHHH
Q 013411 247 VAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT----VGEA-RLLSFGLLFGCVHMF 321 (443)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~-~~~~~~~~~~~~~~~ 321 (443)
..+..+........++..|+.+..|.++..+|.++.+.-+...+.-+++ |.++|| +||| +.+..+.+..+++..
T Consensus 17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~-G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCM-GLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhh-eehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 3334455556667788899999999999999999999999999999666 799997 4665 455567677777766
Q ss_pred HHHhhcc-------hhHHHHHHHHHHhhhhhhhHHHHHHHhcCC-CCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhc
Q 013411 322 LYSVAWS-------SWVPYAAAVFSILSVFSHPCLRTIVSKQVA-SNEQGKAQGCISGICSFANLVSPLAFSPLTALFLS 393 (443)
Q Consensus 322 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 393 (443)
++...++ .|.....+++..++........++..|..+ +++|++..+.......+|..+++.+..++.+..++
T Consensus 96 llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~ 175 (460)
T PRK11462 96 LAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG 175 (460)
T ss_pred HHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6554442 111222344566777777788888888877 78999999999999999999999888887776543
No 242
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=98.70 E-value=3.6e-06 Score=74.56 Aligned_cols=346 Identities=11% Similarity=0.014 Sum_probs=188.9
Q ss_pred CCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccc-----ccccc
Q 013411 4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD-----KYGRK 78 (443)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D-----r~Grr 78 (443)
++++..+.....+...-.+... .+|.+.+. -+.|-+..+...-++ .. .-.-+.|.++.| |+|||
T Consensus 30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~a--------k~vSyt~~a~fS~ay-~P-~sLKllWaPiVDs~y~k~~Grr 98 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQA--------KGVSYTSQAIFSFAY-WP-FSLKLLWAPIVDSVYSKRFGRR 98 (510)
T ss_pred hhhHHHHHHHHHHcCCchhHhh-hhHHHhcC--------CCcchhhhhhhhhhh-hH-HHHHHHHHhhhHHHHHHhhccc
Confidence 4555666666666666677777 77887663 123333333322111 11 223467899999 99999
Q ss_pred hhhHH-HHHHhHHHHHHHHhccCC--------chhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHH
Q 013411 79 ALLTV-PITLSIIPLAILAYSRSR--------NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGI 149 (443)
Q Consensus 79 ~~~~~-~~~~~~i~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 149 (443)
|..++ +..+.+......+...+. +....+...-++.-+ .++..-.+...+.-....+++.|.+......+
T Consensus 99 ksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnf-laAtQDIAVDgwALtmLs~e~lgyaST~q~Vg 177 (510)
T KOG3574|consen 99 KSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNF-LAATQDIAVDGWALTMLSRENLGYASTCQSVG 177 (510)
T ss_pred cceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHH-HHhhhhhhhhHHHHHhcCHhhcCchhHHHHHH
Confidence 98766 334443333333332211 112223233344555 55666667777777777889999888888888
Q ss_pred hhhhhhhhhhhhhhh-----------chh---------hHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhh
Q 013411 150 VSGAFVCGTISARFI-----------STS---------AAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEIS 209 (443)
Q Consensus 150 ~~~g~~~g~~l~~~~-----------~w~---------~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 209 (443)
...|..+|..+--.+ +|. .-.++.+.+.++.-.+..+.-+|.+....
T Consensus 178 ~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~------------- 244 (510)
T KOG3574|consen 178 QTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVD------------- 244 (510)
T ss_pred HhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhh-------------
Confidence 888877764332111 221 11233344444443333233222222111
Q ss_pred hhhhhhhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHH
Q 013411 210 ASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGT 289 (443)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 289 (443)
++.+......++-+++.+ +-|..+.+.......-.++.+-....+.-+.|. |.+.++.+... +..+
T Consensus 245 --------~e~~~~i~~~yk~l~~vL-klk~v~~la~i~lt~K~gf~a~da~t~LkLle~-Gv~ke~Lal~~----v~~~ 310 (510)
T KOG3574|consen 245 --------EELELGIHESYKLLRDVL-KLKSVRWLAGILLTGKLGFQAADALTSLKLLEH-GVPKEELALIA----VPLV 310 (510)
T ss_pred --------hhhhcCHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHhhhhhhccchHHHHc-CCChhHheeee----eehh
Confidence 011111112333333444 456666677777777777777777777777775 99999866654 3344
Q ss_pred HHHHHHHHHhhhhcc--cch--------HHHHHHHHHHHHHHHHHhhcc-------hh-HHHHH-----HHHHHhhhhhh
Q 013411 290 ISQLIMMPVLAPTVG--EAR--------LLSFGLLFGCVHMFLYSVAWS-------SW-VPYAA-----AVFSILSVFSH 346 (443)
Q Consensus 290 ~~~~~~~~~l~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~-----~~~~~~~~~~~ 346 (443)
+.++.. ++...|+. .|+ ...+.... +...+..+.+. .. ..++. .+........+
T Consensus 311 plqI~l-~~~~gk~ta~~~pl~~~lka~~~R~~~~~--~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~f 387 (510)
T KOG3574|consen 311 PLQIAL-PLYIGKWTAGPRPLNVFLKAVPYRLGGGL--VQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMF 387 (510)
T ss_pred hHHHhh-hhhheeecCCCCcchHHHHhhhHHHHHHH--HHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHH
Confidence 444222 34444432 121 11121111 11111111111 00 11111 12233334455
Q ss_pred hHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 347 PCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 347 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
...++..++..||...|+.+.+.|...++|+-.-..+..++.|..
T Consensus 388 v~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 388 VSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 677788899999999999999999999999988888888888864
No 243
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.69 E-value=3.1e-07 Score=77.98 Aligned_cols=146 Identities=18% Similarity=0.160 Sum_probs=105.5
Q ss_pred cchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHH
Q 013411 6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI 85 (443)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~ 85 (443)
.+|.+.+..++......-...+-|.+..+ .+++|+...+-+.+....-.++.+++.|.++||+|++-..+.+.
T Consensus 265 pfw~~~iicv~yyva~fPFi~lg~~fF~~-------rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a 337 (459)
T KOG4686|consen 265 PFWVLVIICVLYYVAWFPFITLGPMFFQK-------RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASA 337 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHH-------hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHH
Confidence 34455555555554444333444555444 57888888899999999999999999999999999998888765
Q ss_pred HHh-HHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh
Q 013411 86 TLS-IIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI 164 (443)
Q Consensus 86 ~~~-~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~ 164 (443)
.+. .++-....++.- .=..+..+.|+ +.+..-......++-..|+++.|++.|..+...++|..+-|++++.+
T Consensus 338 ~~~tl~~H~~l~Ft~l-----sPy~~m~~lGL-sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 338 CILTLLGHSGLFFTFL-----SPYTSMTFLGL-SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred HHHHHHHhhhHHhhhc-----cHHHHHHHHhh-hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence 544 444444444422 22345567787 65554444566778888999999999999999999999999999887
No 244
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.69 E-value=1e-07 Score=88.54 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=117.9
Q ss_pred CCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhH
Q 013411 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT 82 (443)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~ 82 (443)
++|.+..+++..++...+..+.......|.+.. ++.+..+..+.......+.+++.+++.++.+|+|+|+++.
T Consensus 234 ~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~-------lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~ 306 (467)
T COG2211 234 KNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV-------LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFL 306 (467)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE-------cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHH
Confidence 556666677777777777777777777665553 3444455677777888888888999999999999999999
Q ss_pred HHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCC-------cchhHHHHHHHHhhhhhh
Q 013411 83 VPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPG-------RRASVFGIFSGIVSGAFV 155 (443)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~ 155 (443)
.+.++..++.++..+.+. +..+.+++..++.++ +.+...+...++++|..+-+ .-|...+......=+|..
T Consensus 307 ~~~~~~~i~~~~~~f~~~-~~~~l~~~~~~i~~~-g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~a 384 (467)
T COG2211 307 IGLLLLAVGYLLLYFTPA-GSVVLIVVALIIAGV-GTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLA 384 (467)
T ss_pred HHHHHHHHHHHHHHhhcC-cchHHHHHHHHHHHH-HhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 999999999999888872 337889999999999 98999999999999988632 226667777777777777
Q ss_pred hhhhhhhh
Q 013411 156 CGTISARF 163 (443)
Q Consensus 156 ~g~~l~~~ 163 (443)
++..+.++
T Consensus 385 la~~~~g~ 392 (467)
T COG2211 385 LAGFIPGW 392 (467)
T ss_pred HHHHHHHH
Confidence 77655544
No 245
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.64 E-value=1.9e-06 Score=84.01 Aligned_cols=111 Identities=11% Similarity=0.065 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHH
Q 013411 276 QFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVS 354 (443)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 354 (443)
+.+++.+...+++.++.++. |+++|++|||+.+..+.+...++.++...+.+.+.... -++.|++.+........+.+
T Consensus 90 ~~s~~~s~~~lga~~g~l~~-g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLA-GRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 34799999999999999555 79999999999999999999999999999998777766 57779999999999999999
Q ss_pred hcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHH
Q 013411 355 KQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 355 ~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (443)
|..|++.||...+..+....+|..++ .+.+...
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~ 201 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLG-YCINYGT 201 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhh
Confidence 99999999999999998888777777 3334333
No 246
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.63 E-value=2.9e-07 Score=90.10 Aligned_cols=122 Identities=16% Similarity=0.097 Sum_probs=106.6
Q ss_pred HHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhh
Q 013411 268 AKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSH 346 (443)
Q Consensus 268 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 346 (443)
+.+..+.....+..++..++..++.++. |.++||+|||+++..+.++..++.+..++.++.+...+ -++.|++.+...
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~-g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIF-GPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhh-eehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 3446667777888888899999999555 79999999999999999999999999999999887776 566789999999
Q ss_pred hHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 347 PCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 347 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
.....+..|.+++++|+.+..+ ......++.+++...+++...+
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~W 233 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDW 233 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999 8888889999999999888753
No 247
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.62 E-value=3.6e-06 Score=72.37 Aligned_cols=126 Identities=17% Similarity=0.233 Sum_probs=89.4
Q ss_pred HHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcc-------hhHHHH
Q 013411 262 MMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS-------SWVPYA 334 (443)
Q Consensus 262 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 334 (443)
....+++++|+|.++...+.....++..++ +..|.+.|++|++.++.++.+...++...+....+ .|....
T Consensus 24 yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G--~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~ 101 (250)
T PF06813_consen 24 YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG--ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCL 101 (250)
T ss_pred hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc--HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHH
Confidence 344567788999999988888888888765 34489999999999999999999999877765432 222222
Q ss_pred HHHH-HHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 335 AAVF-SILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 335 ~~~~-~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
...+ +.+....+........+.+| ++||++.|+.-....+++.+-..+...+.+.
T Consensus 102 ~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 102 FLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 1111 22233334555666678898 6899999999999888777776665555443
No 248
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.58 E-value=1.7e-06 Score=82.21 Aligned_cols=153 Identities=16% Similarity=0.064 Sum_probs=117.5
Q ss_pred HHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhh
Q 013411 268 AKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSH 346 (443)
Q Consensus 268 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 346 (443)
+..+....+.+...+...++.+++.++. +.+.||++..+.+....++.++..++-...++.+...+ -++.|+..+..+
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~-~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~w 152 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPS-GLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGW 152 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhH-HHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccc
Confidence 4456778889999999999999999655 79999999766666666665555545555666666655 678899999999
Q ss_pred hHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 347 PCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 347 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
|....++..-+.+++||..+|+.+...++|+++|+++...+....+. .... ...+.|++-+++.++..++.++..
T Consensus 153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~-~~~~-gW~~~FiI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS-GGLA-GWRWLFIIEGVITLVLGIVVFFFL 227 (495)
T ss_pred hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC-CCcC-CceeehhHHHHHHHHHHheEEEEe
Confidence 99999999999999999999999999999999999999887764222 1111 224567777777776666555444
No 249
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=98.58 E-value=3.6e-05 Score=71.31 Aligned_cols=367 Identities=12% Similarity=0.067 Sum_probs=184.3
Q ss_pred hhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccc-----ccccchhhHH
Q 013411 9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD-----KYGRKALLTV 83 (443)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D-----r~Grr~~~~~ 83 (443)
.+.+..++...-.+.....+|.++++.. -+.|-.+.|...- ....+- .-++|.++.| |+||||..++
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~------~~~sy~q~~~fSl-a~~PfS-lKlLWaPiVDs~y~~~~GRRKSWii 75 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMA------KKVSYSQQAIFSL-ASYPFS-LKLLWAPIVDSVYSKRIGRRKSWII 75 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhcccc------CCCChhHheeeee-eechhH-HHHhhhhhhhhhcccccCCcchhhh
Confidence 4455556666666676667788876611 1223333333211 111110 1245556555 8999998876
Q ss_pred H-HHHhHHHHHHHHhccC----------------C---chh--HHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchh
Q 013411 84 P-ITLSIIPLAILAYSRS----------------R---NFF--YAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRAS 141 (443)
Q Consensus 84 ~-~~~~~i~~~~~~~~~~----------------~---~~~--~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~ 141 (443)
- -.+.++..+..+...+ . +.+ ..+...-++.=+ -++..-.+...+.-....+++++.
T Consensus 76 P~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~f-l~ATQDIAVDGWALT~Ls~~n~~~ 154 (544)
T PF13000_consen 76 PIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVF-LCATQDIAVDGWALTMLSPENVGY 154 (544)
T ss_pred HHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHH-HHccCCceeehhhhhhcChhhcch
Confidence 3 3344444333332220 0 001 112222222222 333334455566656667788888
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhc-------h-h-----------hHH-HHHHHHHHHHHHHHHHhccCCCCcccccccc
Q 013411 142 VFGIFSGIVSGAFVCGTISARFIS-------T-S-----------AAF-QAATAGSIISAVYMRIFLPESVRDEDLYTPI 201 (443)
Q Consensus 142 ~~~~~~~~~~~g~~~g~~l~~~~~-------w-~-----------~~f-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 201 (443)
+......+.++|..++..+--.++ | | ..| .+-+...++..+...++-+|.|..+...+..
T Consensus 155 ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~ 234 (544)
T PF13000_consen 155 ASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIE 234 (544)
T ss_pred HHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccc
Confidence 888777777777776644332221 0 1 011 2333334444444545556655332211100
Q ss_pred --ccchhhhhhhh---hhhh--hhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcCh
Q 013411 202 --LSSKAEISASC---EEST--KKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNK 274 (443)
Q Consensus 202 --~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (443)
+..+++..+.. ++.+ ..++...-+...+.+++.+ |-|.+..+.+..+..-.++..-......-+.|. |++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~il-kLp~V~~li~ilL~~KigF~a~da~T~LKLlEk-G~~K 312 (544)
T PF13000_consen 235 PINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKIL-KLPNVQTLIIILLTAKIGFQANDAVTSLKLLEK-GLSK 312 (544)
T ss_pred ccccccccccccceecccccccchhhhhhHHHHHHHHHHHH-cCchHHHHHHHHHHHHhccccchhhhHHHHHHc-CCCH
Confidence 00000000000 0000 0011111223455556666 567777788888888888877777777777776 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cc-----------------------------hHHHHHHHHHHHHHHHH
Q 013411 275 NQFADLMVIAGIAGTISQLIMMPVLAPTVG--EA-----------------------------RLLSFGLLFGCVHMFLY 323 (443)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~ 323 (443)
++.+.+.. ..++.++++ |+.+.|+. ++ +..+.++..-.+..++.
T Consensus 313 E~LAl~~l----i~~P~qii~-~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~ 387 (544)
T PF13000_consen 313 EDLALLVL----IDFPFQIIL-PYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLA 387 (544)
T ss_pred HHhHHHHH----HhhhHHHHH-HHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence 98655543 344444333 44444432 12 11111222111111111
Q ss_pred ----Hhhc-c----hhHHHHH----HHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 324 ----SVAW-S----SWVPYAA----AVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 324 ----~~~~-~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
...+ + .+..... ++-.+.....+....+.-++..+|..=|+.+.+.|++.++|+.--..+.=++.|.
T Consensus 388 ~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 388 QLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 1111 1 1111111 1223344456678888889999999999999999999999998877777777776
Q ss_pred h
Q 013411 391 F 391 (443)
Q Consensus 391 ~ 391 (443)
+
T Consensus 468 f 468 (544)
T PF13000_consen 468 F 468 (544)
T ss_pred c
Confidence 4
No 250
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.57 E-value=9.9e-08 Score=84.00 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=96.9
Q ss_pred hHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchh-HHHHHHHHhhhhhccchhhhhhhhhhhcCCCC
Q 013411 58 GLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFF-YAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP 136 (443)
Q Consensus 58 ~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~ 136 (443)
.+...-|.++.+++.||+|||+++..+.+++++..++...+.+.+.+ .++..+|++... .+.+.+.|..|.+|.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg-----~fqvaYvYtPEVyPT 465 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISG-----AFQVAYVYTPEVYPT 465 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhc-----hheEEEEecCcccch
Confidence 34556678899999999999999999999999999888777664323 344556655442 346789999999999
Q ss_pred CcchhHHHHHHHHhhhhhhhhhhhhhhh--chhhHHHHHHHHHHHHHHHHHHhccC
Q 013411 137 GRRASVFGIFSGIVSGAFVCGTISARFI--STSAAFQAATAGSIISAVYMRIFLPE 190 (443)
Q Consensus 137 ~~r~~~~~~~~~~~~~g~~~g~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~~~~e 190 (443)
+-|+...|.-+...-+|.++.|.++-.. +-..+..+.+.+.++..+.. .++|-
T Consensus 466 avRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIav-cffPi 520 (528)
T KOG0253|consen 466 AVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAV-CFFPI 520 (528)
T ss_pred hhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHh-eeeee
Confidence 9999999999999999999999999433 33455566666666655544 66664
No 251
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.56 E-value=1.8e-06 Score=76.31 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=126.1
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccccc-ccchhhHHHH
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-GRKALLTVPI 85 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-Grr~~~~~~~ 85 (443)
-|.+.+...+..+.++....-+|.+..| .+.|..+.|++.+...+.+...++....+++|. ++|+..+...
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~--------~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~ 281 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILID--------RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL 281 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHH--------cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 4455666667777778888889999766 578888999999999999999999999999965 6778888888
Q ss_pred HHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcch-hHHHHHHHHhhhhhhhhhhhhhhh
Q 013411 86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRA-SVFGIFSGIVSGAFVCGTISARFI 164 (443)
Q Consensus 86 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~-~~~~~~~~~~~~g~~~g~~l~~~~ 164 (443)
.++.++...+.+.+... .+..-++.|+ +.|..+|.....+.+.+++.++. +-.++.|....+=...||.+.+++
T Consensus 282 ~~~l~G~~G~~~~P~~~----~~lw~~llG~-G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~l 356 (395)
T COG2807 282 LLMLVGLVGLLLAPGQL----PILWALLLGL-GQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFL 356 (395)
T ss_pred HHHHHHHHHHHHhhhhH----HHHHHHHHhC-ccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence 88888888888887732 2222589999 99999999999999988755443 333333443333345678888887
Q ss_pred -----chhhHHHHHHHHHHHHHHHHHHh
Q 013411 165 -----STSAAFQAATAGSIISAVYMRIF 187 (443)
Q Consensus 165 -----~w~~~f~~~~~~~~~~~~~~~~~ 187 (443)
+|+..+...+...+...+..+..
T Consensus 357 hDa~gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 357 HDATGSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence 78888887777766655554333
No 252
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.53 E-value=2.2e-07 Score=85.91 Aligned_cols=162 Identities=15% Similarity=0.219 Sum_probs=130.7
Q ss_pred hhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHh
Q 013411 9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLS 88 (443)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~ 88 (443)
.+++...+..++.+.+...+=..++| .+......|........+-++.-++.+++.+|+|+-+++..++...
T Consensus 375 lff~~av~mG~g~~lv~tFLfWHled--------~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~ 446 (618)
T KOG3762|consen 375 LFFFVAVVMGAGVGLVFTFLFWHLED--------LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACN 446 (618)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhh--------cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHH
Confidence 34555566666666766666555544 3445556788888888888999999999999999999999999999
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHH-Hhhhhhhhhhhhhhhh---
Q 013411 89 IIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSG-IVSGAFVCGTISARFI--- 164 (443)
Q Consensus 89 ~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~l~~~~--- 164 (443)
.+=.+......| .|+.+-..+++|+ ..+..+.+..+|+++..||+.|..+.++.+. ..++|--+|.++|+.+
T Consensus 447 ~~Rf~~~S~L~n---~W~vLPieilqgi-t~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~ 522 (618)
T KOG3762|consen 447 VGRFLYYSYLQN---PWMVLPIEILQGI-THALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER 522 (618)
T ss_pred HHHHHHHHHhcC---chheeeHHHHHHH-HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee
Confidence 999999999999 9999999999999 9999999999999999999999999998854 3456666666666654
Q ss_pred -chhhHHHHHHHHHHHHHH
Q 013411 165 -STSAAFQAATAGSIISAV 182 (443)
Q Consensus 165 -~w~~~f~~~~~~~~~~~~ 182 (443)
+-|..|.+.++.+++.++
T Consensus 523 fg~~ttf~~~giAcl~~l~ 541 (618)
T KOG3762|consen 523 FGARTTFRIFGIACLVTLA 541 (618)
T ss_pred ehhHHHHHHHHHHHHHHHH
Confidence 667888877776666544
No 253
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=98.51 E-value=5e-06 Score=77.69 Aligned_cols=182 Identities=16% Similarity=0.180 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHH-HcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc-chHHHHHHHHHH
Q 013411 240 TFSQAAIVAFLSNLADAGLQGSMMYYLKA-KFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGE-ARLLSFGLLFGC 317 (443)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 317 (443)
.++...+..++....+.......-+|+++ ..+-+....|+..+...++..+..+.+ ++...|.+. |+.++.+.++..
T Consensus 35 si~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF-~~Ws~k~~~~k~Pli~s~ii~~ 113 (488)
T KOG2325|consen 35 SIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIF-GIWSNKTGSVKKPLIVSFLIAI 113 (488)
T ss_pred hHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhh-cccccccCCcccCHHHHHHHHH
Confidence 34445555565555555444444466665 236777788999999999999999777 688888775 788888999999
Q ss_pred HHHHHHHh-hcchh-HHHHH----HHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 318 VHMFLYSV-AWSSW-VPYAA----AVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 318 ~~~~~~~~-~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
++.+++.. ...+. ..+.. ++.|++. .......+++++..-+++|.++++..+....+|.++||.+...+...
T Consensus 114 ~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L- 191 (488)
T KOG2325|consen 114 IGNLLYLALAYVPNGVKYLMLVARILTGVGV-GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL- 191 (488)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHcCcCc-ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh-
Confidence 99888733 22211 22222 2223332 23456788888887789999999999998888888888876554433
Q ss_pred hcCC------CCCccchhHHHHHHHHHHHHHHHHHHhhc
Q 013411 392 LSDR------APFNFPGFSIMCIGFVSMTAFIQSIMIRV 424 (443)
Q Consensus 392 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (443)
+..+ ..+.....+-++.+++.++..++.....+
T Consensus 192 g~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 192 GEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK 230 (488)
T ss_pred cCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence 1111 11111233555666666666665554443
No 254
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.50 E-value=9.5e-05 Score=66.10 Aligned_cols=148 Identities=10% Similarity=-0.018 Sum_probs=99.7
Q ss_pred HHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhh
Q 013411 268 AKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSH 346 (443)
Q Consensus 268 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 346 (443)
+.+|++..+++.++........+...+. |.+.||+|||+.-+...++..++++.- ..++.+.+++ -++-|+.....+
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~-G~laD~~Grk~~cl~~cily~~scl~k-~~~~~~~L~~GRvlgGiaTSLLf 139 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFV-GSLADRYGRKKACLLFCILYSLSCLTK-HSSNYPVLLLGRVLGGIATSLLF 139 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCchHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHH
Confidence 4579999999999988888888888666 789999999999988888888888643 3344555444 456677777777
Q ss_pred hHHHHHH-Hh----cCCCCcchhHHhHHhH-HHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHH
Q 013411 347 PCLRTIV-SK----QVASNEQGKAQGCISG-ICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSI 420 (443)
Q Consensus 347 ~~~~~~~-~~----~~p~~~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (443)
...-++. .| -+|++..+..++.... .+.+-.+.+..+...+.+..+. .+..+|.....+.+++..+..
T Consensus 140 S~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~------g~vaPF~~a~~~l~~~~~~I~ 213 (354)
T PF05631_consen 140 SAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF------GPVAPFDAAIVLLAVAAVLIL 213 (354)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC------CCcchHHHHHHHHHHHHHHHH
Confidence 7666664 33 3455556666665553 3334455555555566665421 123467777777777777665
Q ss_pred Hhh
Q 013411 421 MIR 423 (443)
Q Consensus 421 ~~~ 423 (443)
...
T Consensus 214 ~~W 216 (354)
T PF05631_consen 214 KTW 216 (354)
T ss_pred hcc
Confidence 544
No 255
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.43 E-value=5.6e-06 Score=75.04 Aligned_cols=170 Identities=16% Similarity=0.182 Sum_probs=132.0
Q ss_pred CcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccc-ccccchhhHH
Q 013411 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD-KYGRKALLTV 83 (443)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D-r~Grr~~~~~ 83 (443)
++....+...++..++.++.-+++-+|- .+-++.+..+..-+......|..++....|++.. |.++|+.-..
T Consensus 208 ~~a~~f~~fl~l~t~a~~~QD~iLEPyg-------g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~ 280 (403)
T PF03209_consen 208 PQARRFFVFLFLGTLAFFMQDVILEPYG-------GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAAL 280 (403)
T ss_pred CChhHHHHHHHHHHHHHHhhHHHcCCch-------hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 3444556667777777777777776664 3458889999999999999999999999998887 6778888888
Q ss_pred HHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh
Q 013411 84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF 163 (443)
Q Consensus 84 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~ 163 (443)
++....++..+..++....+.+.+...-++.|+ +.|.......+.+.|..++++.|..+|.+.....++..+|..+++.
T Consensus 281 G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~-g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~ 359 (403)
T PF03209_consen 281 GCLLGALAFALIILAGPLGSPWLFRPGVFLLGL-GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGA 359 (403)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH-hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888776665554333337899999999999 9999999999999999999999999999999988888888777765
Q ss_pred h--------------chhhHHHHHHHHHHHHHH
Q 013411 164 I--------------STSAAFQAATAGSIISAV 182 (443)
Q Consensus 164 ~--------------~w~~~f~~~~~~~~~~~~ 182 (443)
. ++-..|.+.++..++..+
T Consensus 360 ~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 360 LRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 4 233456666655544433
No 256
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.41 E-value=2.3e-05 Score=77.60 Aligned_cols=168 Identities=11% Similarity=0.049 Sum_probs=118.1
Q ss_pred hhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-cccchHHHHHHHHHHHHHHHHHhhcch---
Q 013411 254 ADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT-VGEARLLSFGLLFGCVHMFLYSVAWSS--- 329 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 329 (443)
+++++...+..|+.+.+|++...+..+........-+.. ++++++.|+ +|+++.+..+.++..++..++......
T Consensus 2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~p-ilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTP-LIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 456777888889888889998887777666666666666 555789987 699999999999988888777654211
Q ss_pred -----h-HHHHHHHHHHhhhhhhhHHHHHHHhcCCCC---cchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCcc
Q 013411 330 -----W-VPYAAAVFSILSVFSHPCLRTIVSKQVASN---EQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNF 400 (443)
Q Consensus 330 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 400 (443)
. ......+...|.+..-|...+...|.++++ .+-+.+.+.....++|+.+++.+.+++.+..+..+... .
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~-~ 159 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQD-C 159 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCc-c
Confidence 1 112244556777788899999999988754 36678888888889999999999998876542211111 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhh
Q 013411 401 PGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
....+.+.+++++++++.....+
T Consensus 160 ~~~aF~i~~i~m~ia~lvf~~g~ 182 (654)
T TIGR00926 160 YPLAFGVPAILMILALIVFMAGS 182 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 13466666666666666554433
No 257
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.40 E-value=7.9e-06 Score=74.55 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=91.3
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcc---h-----hHHHHHHHHHHhhh
Q 013411 272 FNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS---S-----WVPYAAAVFSILSV 343 (443)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~ 343 (443)
+++...+.+.....++.+.+++++ |++.||+|||++....++++.++.++.+.... + |+...=.++|++.+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~F-G~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG 159 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFF-GWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG 159 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHH-HHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence 566778889999999999999777 79999999999999988888888775554432 1 11122356688899
Q ss_pred hhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHH
Q 013411 344 FSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 344 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (443)
.=+|...+.++|....+.||.-.+...+++..|...|..+.-.+.
T Consensus 160 GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~ 204 (538)
T KOG0252|consen 160 GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVS 204 (538)
T ss_pred CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHH
Confidence 999999999999999999999999988887776666655544433
No 258
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.39 E-value=6.2e-07 Score=61.68 Aligned_cols=71 Identities=21% Similarity=0.227 Sum_probs=59.9
Q ss_pred hhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHH
Q 013411 9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL 87 (443)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~ 87 (443)
.+-...++.+.+.+...|.+|.+.+ +.++++.++|.+.++..+...++++++|.++||++|++..+.....
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~--------~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLK--------QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhh--------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3445566777788889999999954 4789999999999999999999999999999999998877765544
No 259
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=98.37 E-value=0.0009 Score=63.81 Aligned_cols=246 Identities=13% Similarity=0.131 Sum_probs=145.6
Q ss_pred HHHHHHHHhH-HHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhc--cCC-----c-------------------
Q 013411 50 SGFQQAIIGL-GTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYS--RSR-----N------------------- 102 (443)
Q Consensus 50 ~g~~~s~~~~-~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~-----~------------------- 102 (443)
+..+-....+ ...+......+++||++|.+++-+....+.....++++. |+. +
T Consensus 60 I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~ 139 (491)
T PF03219_consen 60 IPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIA 139 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHH
Confidence 4444443333 334556778999999999998877666666555555542 110 0
Q ss_pred --hhHHHHHHHHhhhhhccchhhh-hhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhhc-------------h
Q 013411 103 --FFYAYYVLRTLTAMVCEGSIHC-LSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFIS-------------T 166 (443)
Q Consensus 103 --~~~~l~~~r~l~G~~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~-------------w 166 (443)
..|...+..+..-+ -+....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+...+. |
T Consensus 140 ~~~~Wt~slfYv~aEl-wgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~ 218 (491)
T PF03219_consen 140 MFRNWTFSLFYVMAEL-WGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAW 218 (491)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccH
Confidence 01222233333333 2223323 35788999999999999999999999999998877665542 3
Q ss_pred hhHHH-HHHHHHH--HHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHH
Q 013411 167 SAAFQ-AATAGSI--ISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQ 243 (443)
Q Consensus 167 ~~~f~-~~~~~~~--~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (443)
...+. +..++.+ +..+.....+.+...+++. ..+...++++++++.+.++.++.+.++|.+..
T Consensus 219 ~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~--------------~~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~ 284 (491)
T PF03219_consen 219 ELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPR--------------FYPSAKKKKKKKPKMSLKESFKLLLKSKYLLC 284 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccc--------------cchhhhcccccCCCccHHHHHHHHHhCHHHHH
Confidence 22221 1111111 1122222333322111110 00111223344555678888888889999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhh----HHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 013411 244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQ----FADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFG 312 (443)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 312 (443)
+.+...+++.....+....-..+++.+. ++.+ .|......++..++.. ++++.+.+|+|-+....+.
T Consensus 285 Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ysafmG~~~~~tGivtii~~-~l~~~iir~~GW~~~Alit 355 (491)
T PF03219_consen 285 IALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYSAFMGKFSSWTGIVTIIMM-FLSSNIIRRFGWRTAALIT 355 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHh
Confidence 9988888888877777666666666543 3333 3555566777777777 5567899998877655544
No 260
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.32 E-value=9.3e-07 Score=61.17 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=67.7
Q ss_pred HhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHh
Q 013411 18 CFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAY 97 (443)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~ 97 (443)
.++...+.|.+|.+.+| .++|..+.|++.+.+++|+.+|.+...++.++..+++.+..+.+...+..+.+++
T Consensus 5 GigRFayTplLP~M~~~--------~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQAD--------GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred hhHHHHHHhHhHHHHHh--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999998544 6888899999999999999999999999999988899999999999999999999
Q ss_pred ccC
Q 013411 98 SRS 100 (443)
Q Consensus 98 ~~~ 100 (443)
.++
T Consensus 77 ~~~ 79 (85)
T PF06779_consen 77 THS 79 (85)
T ss_pred Hhc
Confidence 988
No 261
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.30 E-value=1.4e-05 Score=72.80 Aligned_cols=126 Identities=10% Similarity=-0.033 Sum_probs=89.2
Q ss_pred HHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcch---hHHH--H---
Q 013411 263 MYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSS---WVPY--A--- 334 (443)
Q Consensus 263 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~--- 334 (443)
..|.++.|| +...+-++..++.+..++.. +.+-|+.||+|-|....++....+++..+=...... .... +
T Consensus 68 ~n~~~~~Yg-s~~~~~wlsmIym~v~vp~g-f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~ 145 (480)
T KOG2563|consen 68 NNYVNSFYG-SSSAADWLSMIYMVVSVPFG-FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHT 145 (480)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHHHHHHHh-hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHH
Confidence 446666677 66667788888999999998 454699999999999999999998887765544322 1111 1
Q ss_pred -HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 335 -AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 335 -~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
..+.+...........-+..--+|+++|+++..+..+.+.+|.+++.++...+..+
T Consensus 146 Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 146 GQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 11222222222222234455568999999999999999999999998888877766
No 262
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.20 E-value=6.4e-08 Score=93.03 Aligned_cols=111 Identities=13% Similarity=0.046 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhc---chhHHHH-HHHHHHhhhhhhhHHHH
Q 013411 276 QFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW---SSWVPYA-AAVFSILSVFSHPCLRT 351 (443)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~ 351 (443)
+.+...+...++..++. ++.|++.||+|||+.+..+..+..++.++..+.+ +.+.... -.+.|++.+...+....
T Consensus 47 ~~~~~~~~~~~g~~~G~-~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~ 125 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGA-LIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI 125 (451)
T ss_pred HHHHHHHHHHhhhcccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45778888999999999 4558999999999999999999999999998888 6665555 46678999999999999
Q ss_pred HHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHH
Q 013411 352 IVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL 387 (443)
Q Consensus 352 ~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 387 (443)
++.|..|+++|+...++.+....+|..++..+.-.+
T Consensus 126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999888888877776665433
No 263
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.18 E-value=1.4e-05 Score=63.29 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=85.4
Q ss_pred HHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcC
Q 013411 54 QAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADN 133 (443)
Q Consensus 54 ~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~ 133 (443)
.++......+.+++.+.+.+++|.|+.++++.+...+-.... +-++ .+.++.+-.+.|+ +.+..+++...++.+.
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~---~~~l~~~s~l~G~-~~a~lW~aqg~ylt~~ 117 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPN---SYTLYPASALLGF-GAALLWTAQGTYLTSY 117 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhhh---HHHHHHHHHHHhh-hhHHhhHhhhHHHHHc
Confidence 344455566677778888999999999999998887554443 4556 7899999999999 9999999999999999
Q ss_pred CCCCcchhHHHHHHHHhhhhhhhhhhhhh
Q 013411 134 VPPGRRASVFGIFSGIVSGAFVCGTISAR 162 (443)
Q Consensus 134 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~ 162 (443)
.++++|++-.++.......+.++|.++..
T Consensus 118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 118 STEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888777766543
No 264
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=98.17 E-value=1.4e-05 Score=68.80 Aligned_cols=361 Identities=15% Similarity=0.121 Sum_probs=179.1
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCC---------CcchhhhHHHHHHHHHHHhHHHHHhhhccccccccccc
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPG---------RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGR 77 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Gr 77 (443)
....++...++.+++-+...+--+++.++.++. ..|++. .-.|.+.-+-.+...+..+......||+.-
T Consensus 14 ~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~--~stg~VLLaDilPsL~iKl~~Pff~~rfpf 91 (409)
T KOG3880|consen 14 AVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQS--VSTGAVLLADILPSLAIKLTAPFFIHRFPF 91 (409)
T ss_pred chHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccc--cccchhhhhhhhHHHHHHHhchhhhhhccc
Confidence 334455566666666655555555555543311 122222 124666667777788888888888998754
Q ss_pred chhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhh
Q 013411 78 KALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCG 157 (443)
Q Consensus 78 r~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g 157 (443)
-.=..+..++.+.+..+.+++++ .++-+.+-.+..+ +.|.....-.++ +..+++ ...+.++.+.+.+.++|
T Consensus 92 ~~Ri~~~v~~sa~s~~lVafs~s---~~~sL~GV~~aSi-ssGlGEiTFL~l-ss~Y~~----~~i~~WSSGTGgAGliG 162 (409)
T KOG3880|consen 92 GFRIALVVLLSALSFFLVAFSNS---VPMSLLGVVFASI-SSGLGEITFLAL-SSRYPS----IVIAGWSSGTGGAGLIG 162 (409)
T ss_pred chHHHHHHHHHhcceEEEEeccc---hhHHHhhhhhhhh-cCCcceeehhhh-hccCCC----ceeccccCCCCcchhhh
Confidence 43345566677888889999999 8888888888877 666554433332 223332 23344444444444555
Q ss_pred hhhhhh------hchhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhh--hhhhhhhhcccCCchh
Q 013411 158 TISARF------ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCE--ESTKKLQVFKRLPSID 229 (443)
Q Consensus 158 ~~l~~~------~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 229 (443)
..--.. ++.|...++...+.++.....++.+++++.... ..++........+.. +..+++....+....+
T Consensus 163 a~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~--ptl~~~~~~~~~~~~~~~a~e~~sv~s~~~~~~ 240 (409)
T KOG3880|consen 163 ASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYS--PTLQPSTEIIPSQYLPFEAAEEKSVPSRRLGLK 240 (409)
T ss_pred hhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccC--CCcCccceeccCCCCcccccccccCchhhhcHH
Confidence 322111 245777777777776666666566665443221 111110000000000 0000000111122333
Q ss_pred HHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHH-H-HHHHcCcChh---hHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 013411 230 DMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMY-Y-LKAKFHFNKN---QFADLMVIAGIAGTISQLIMMPVLAPTVG 304 (443)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (443)
+-++.+ +.+...++-.+...+..+.++.-+.. . +.-..|++.. ++-++...+.++..+.+ -+-|+=
T Consensus 241 e~~~~i---~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqvlYQlGVFiSR------SS~~~~ 311 (409)
T KOG3880|consen 241 ETLKRI---KPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQVLYQLGVFISR------SSINLF 311 (409)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhheeeeeeEEEEe------ccceEE
Confidence 322222 11222222222222333333222111 1 1101243322 24444444444333332 111111
Q ss_pred cch---HHHHHHHHHHH---HHHHHHhhcchhHHHHHHHH-HHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHH
Q 013411 305 EAR---LLSFGLLFGCV---HMFLYSVAWSSWVPYAAAVF-SILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFAN 377 (443)
Q Consensus 305 ~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 377 (443)
+-+ .+.+-.+.-.+ .-..+.+.++.|...+.+++ |+..|..+...+--+.+..++++|--+++.....-.+|.
T Consensus 312 ~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi 391 (409)
T KOG3880|consen 312 TMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGI 391 (409)
T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhH
Confidence 222 22222222111 12223344555555555554 677777777777778888888999999999988888888
Q ss_pred HHhHHhHHHHHH
Q 013411 378 LVSPLAFSPLTA 389 (443)
Q Consensus 378 ~~~~~~~g~l~~ 389 (443)
.++..+.-++.+
T Consensus 392 ~lA~~lalplh~ 403 (409)
T KOG3880|consen 392 FLAGLLALPLHN 403 (409)
T ss_pred HHHHHHhccchh
Confidence 777776655544
No 265
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=98.17 E-value=0.0033 Score=58.55 Aligned_cols=256 Identities=11% Similarity=0.110 Sum_probs=150.3
Q ss_pred HHHHHHHHHhH-HHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhcc---------C----------Cc-h----
Q 013411 49 LSGFQQAIIGL-GTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSR---------S----------RN-F---- 103 (443)
Q Consensus 49 ~~g~~~s~~~~-~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~---------~----------~~-~---- 103 (443)
.+.++-+..-+ +..+..++..++.+++.|.+++-.-...+....+++++.- + .+ .
T Consensus 62 ~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ 141 (509)
T COG3202 62 SISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWF 141 (509)
T ss_pred hhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceee
Confidence 45566666666 6678888999999999999998877777766666666431 1 00 0
Q ss_pred -----hHHHHHHHHhhhhhccchhhh-hhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhhc-hh---------
Q 013411 104 -----FYAYYVLRTLTAMVCEGSIHC-LSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFIS-TS--------- 167 (443)
Q Consensus 104 -----~~~l~~~r~l~G~~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~-w~--------- 167 (443)
-|..-+...+.-+ -.+.... .-.....|.++.+|-.|..+.++.+.+++.+++..+..+++ ++
T Consensus 142 ili~~~Ws~s~~Yi~aEL-WgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~ 220 (509)
T COG3202 142 ILIVGEWSYSLFYIMAEL-WGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKD 220 (509)
T ss_pred eEeecchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHH
Confidence 0333333333333 2222222 44567899999999999999999999999998887776663 22
Q ss_pred ----hHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHH
Q 013411 168 ----AAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQ 243 (443)
Q Consensus 168 ----~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (443)
..+.+......+.. ....++.+.-.+++. -.....++++.++.+....+.++.+.++|.+..
T Consensus 221 ~~~~~~~~vi~~~~~i~~-~l~~~~~r~il~~~~-------------f~~~~~~kk~~~k~k~~~~~s~k~i~~SkyL~~ 286 (509)
T COG3202 221 LLLQILFIVIVILGIIAI-LLYRYINRNVLTDPL-------------FYLRAKKKKKKKKLKLGLIESFKMILRSKYLGA 286 (509)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhcccCcc-------------hhHHHhcccccccccCcHHHHHHHHHhhhHHHH
Confidence 12222222222222 222332221111110 000111122334445677888888889999998
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhh---HHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHH
Q 013411 244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQ---FADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVH 319 (443)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 319 (443)
+.+...+++.+...+....-.-.++.+-.+.+. .|.+....++...+.....++.+.+|.|-....++.-++..+.
T Consensus 287 ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~lit 365 (509)
T COG3202 287 IALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLIT 365 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 888888888877766655444444433222221 3444556666655555566778888888665555544444333
No 266
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.14 E-value=7.5e-05 Score=70.69 Aligned_cols=131 Identities=12% Similarity=0.072 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcch
Q 013411 284 AGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQG 363 (443)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g 363 (443)
.++..++....+ |.++||+|||..+....+...+....+.+.. |...+..-...+.+......+++++|...++.|.
T Consensus 71 ~~~~~~i~s~~i-G~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~~~~l~g~~~~~~s~~~a~vadis~~~~R~ 147 (463)
T KOG2816|consen 71 AGLLTLISSPLI-GALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFLLLGLSGGFSAIFSVGFAYVADISSEEERS 147 (463)
T ss_pred hHHHHHHHHhhh-HHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhhhcccccchhhhhhhhhhheeeccchhHHH
Confidence 367777777566 7999999999999988888887777666655 2222211123345566788899999999999999
Q ss_pred hHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhhcC
Q 013411 364 KAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIRVA 425 (443)
Q Consensus 364 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
..+|+.+.....+..++|...+.+.+..+ ....+.+..+..++...+.....++
T Consensus 148 ~~~gll~~~~~~~~~~~p~~~~~~~~~~~--------~a~~f~ia~~~~~~~~~y~~~~l~E 201 (463)
T KOG2816|consen 148 SSIGLLSGTFGAGLVIGPALGGYLVKFLG--------IALVFLIAAASGILSLLYMLLFLPE 201 (463)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcC--------chHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999998832 2456777777777777777766543
No 267
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=98.07 E-value=0.00072 Score=63.92 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHh
Q 013411 331 VPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLA 383 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~ 383 (443)
..+...++++..|........+..+.+++++|..+-.+......+|-.+|..+
T Consensus 375 ~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 375 FIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34447778888888888888899999999999888888887777777777655
No 268
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.05 E-value=5.4e-05 Score=52.06 Aligned_cols=70 Identities=21% Similarity=0.236 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH
Q 013411 244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLF 315 (443)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 315 (443)
+-...++...+......++|.|+++. |+|+.+.|.+.++..+..+++.++. |+++||.++++........
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~~-Gl~~~~iGil~~i~~~~~~~~~pl~-g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQL-GLSPSQIGILSAIRPLIRFLAPPLW-GFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhc-CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCccHHHHHHHHH
Confidence 34455666677778888999999974 9999999999999999999999665 7999999998877665443
No 269
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=97.92 E-value=0.003 Score=61.69 Aligned_cols=139 Identities=19% Similarity=0.148 Sum_probs=98.0
Q ss_pred hhhhHHHHHHHHHHHhHHHHHhhhccccccccc-ccchhhHHHHHHhHHHHHHHHhccC---------------------
Q 013411 43 CSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-GRKALLTVPITLSIIPLAILAYSRS--------------------- 100 (443)
Q Consensus 43 ~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~~--------------------- 100 (443)
++.+.....-..+.+.-......+.++.++|-| ||-+++.++.++..++..+..++..
T Consensus 68 ~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~ 147 (571)
T KOG1237|consen 68 LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESP 147 (571)
T ss_pred hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCc
Confidence 444444455566667777777888999999976 9999999988888777554443211
Q ss_pred -CchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCC---CC---cchhHHHHHHHHhhhhhhhhhhhhhh----hchhhH
Q 013411 101 -RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVP---PG---RRASVFGIFSGIVSGAFVCGTISARF----ISTSAA 169 (443)
Q Consensus 101 -~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~ 169 (443)
......+..+.-+..+ |.|+.-|...++=+|-++ ++ ++...+.++....+.|..++-.+-.+ .+|.+.
T Consensus 148 s~~q~~~~~~~l~lia~-G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lg 226 (571)
T KOG1237|consen 148 SKLQLAVLYGALYLIAL-GAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLG 226 (571)
T ss_pred chHHHHHHHHHHHHhee-ccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceee
Confidence 0012356677777777 888989999999999888 32 22366788888888888887655544 389999
Q ss_pred HHHHHHHHHHHHH
Q 013411 170 FQAATAGSIISAV 182 (443)
Q Consensus 170 f~~~~~~~~~~~~ 182 (443)
|-+..+...++.+
T Consensus 227 f~i~~~~~~lai~ 239 (571)
T KOG1237|consen 227 FGIPTVLNALAIL 239 (571)
T ss_pred ccHHHHHHHHHHH
Confidence 8888776666544
No 270
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.92 E-value=0.00064 Score=64.62 Aligned_cols=130 Identities=18% Similarity=0.274 Sum_probs=93.4
Q ss_pred HHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----cchHHHHHHHHHHHHHHHHHhhcc----hh
Q 013411 260 GSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVG-----EARLLSFGLLFGCVHMFLYSVAWS----SW 330 (443)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~~ 330 (443)
.-..+|+++.+|.++.+...+.....+...+-. +. |.++|.+. ||+-++++.++..++...+...+. ..
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp-~~-g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKP-LY-GLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhh-hH-HhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 345677888899999998888877777766665 66 68999863 555666677777666665555443 22
Q ss_pred HHH-HHHHHHHhhhhhhhHHHHHHHhcCC--CCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 331 VPY-AAAVFSILSVFSHPCLRTIVSKQVA--SNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 331 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
... ...+..++.........++..|... ++.+|...+.......+|+.++..+.|++.+..
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~ 151 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF 151 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 222 2344466677777777777777663 234888899999999999999999999998874
No 271
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.84 E-value=0.0018 Score=51.39 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHhhhhhhhHHHHHHHhcCCC
Q 013411 281 MVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPY-AAAVFSILSVFSHPCLRTIVSKQVAS 359 (443)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ 359 (443)
.++......+.. ++.|.+.+++|.|+.++++.+...+........ +.+..+ ...+.|++.+..+...-.++.+..++
T Consensus 43 lai~Y~~~~~s~-l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~-~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 43 LAILYGSFAISC-LFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP-NSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHHHHHHHHH-HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 344455556666 445889999999999999999888766655443 334444 46788999999999999999999999
Q ss_pred CcchhHHhHHhHHHHHHHHHhHHhHHHH
Q 013411 360 NEQGKAQGCISGICSFANLVSPLAFSPL 387 (443)
Q Consensus 360 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l 387 (443)
+.+++..|+.-.+.+.+.++|..+.-.+
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888887777776655444
No 272
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.80 E-value=0.00055 Score=63.90 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=79.8
Q ss_pred hhhHHHHHHhHHHHHHHHhccCCc------hhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCC---cchhHHHHHHHH
Q 013411 79 ALLTVPITLSIIPLAILAYSRSRN------FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPG---RRASVFGIFSGI 149 (443)
Q Consensus 79 ~~~~~~~~~~~i~~~~~~~~~~~~------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~ 149 (443)
|+++++.++..+|.++..++.... ..+.+.++-.+.++ |.|..-|...++.+|.++++ +|.+.+.++..+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~-G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAV-GTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHH-HHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHh-ccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 567788888888888854442211 13678899999999 99999999999999999866 466788889999
Q ss_pred hhhhhhhhhhhhhhh----chhhHHHHHHHHHHHHHHH
Q 013411 150 VSGAFVCGTISARFI----STSAAFQAATAGSIISAVY 183 (443)
Q Consensus 150 ~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~~~~~~ 183 (443)
.++|..+++.+..++ +|.+.|.+.++..++..+.
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~ 118 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV 118 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence 999999988776665 7899999988877665543
No 273
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.65 E-value=0.0077 Score=55.66 Aligned_cols=134 Identities=10% Similarity=0.058 Sum_probs=96.6
Q ss_pred hhhHHHHHHHHHHH-cCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 013411 256 AGLQGSMMYYLKAK-FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA 334 (443)
Q Consensus 256 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (443)
-....++..|+.+. .|++.++...-.-....=+-+..++....+.|..+.|++++.+.+...+...++.+..+.+..-+
T Consensus 20 rPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~ 99 (412)
T PF01770_consen 20 RPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQL 99 (412)
T ss_pred CCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHH
Confidence 45667788888876 68988875543333333233333344468899999999999999998888888888877655444
Q ss_pred -HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 335 -AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 335 -~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
-+..|...+ ...+.++++-..+|+++--++.+......-+|..++..++-.+.+.
T Consensus 100 ~q~~yg~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~ 155 (412)
T PF01770_consen 100 MQFFYGLATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF 155 (412)
T ss_pred HHHHHHHHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444433 3567778888888999889999999999888888888887766664
No 274
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=97.59 E-value=0.0071 Score=55.42 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHHcCcCh--hh-HHHHHHH-HHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH-------
Q 013411 256 AGLQGSMMYYLKAKFHFNK--NQ-FADLMVI-AGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYS------- 324 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~g~~~--~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------- 324 (443)
....+.+|-+..+..+-.. .. .-..... ..+...+|. ....+..++ +||. +.+..++-.+..-++.
T Consensus 260 ~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~-~~a~~~~~~-~~r~-l~i~v~lR~lfiPlF~~cn~~~~ 336 (406)
T KOG1479|consen 260 FVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGS-ILAALLTWP-DPRK-LTIPVLLRLLFIPLFLLCNYPPL 336 (406)
T ss_pred eeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhh-hhhhcccCC-CCce-ehHHHHHHHHHHHHHHHhccCCC
Confidence 3334456777665542222 22 2233333 566677775 332333322 2333 3333333332222222
Q ss_pred ---hhcchhHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhH
Q 013411 325 ---VAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSP 381 (443)
Q Consensus 325 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~ 381 (443)
+.++.|......++++..|-.....+.+..+.+|++++-.+-.+....-..|-+.|.
T Consensus 337 ~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~ 396 (406)
T KOG1479|consen 337 PVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGS 396 (406)
T ss_pred CceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 222345555577888889988899999999999988776555555555444444443
No 275
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.51 E-value=1.4e-05 Score=77.45 Aligned_cols=172 Identities=12% Similarity=0.110 Sum_probs=2.0
Q ss_pred hhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhc-----
Q 013411 253 LADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW----- 327 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 327 (443)
....++....-.-++++|+++..+.|.+.+.+-++..+..+++ .++.+|..|-+.+-.+.++.+++.+++.+.+
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~v-sy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~ 94 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFV-SYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGP 94 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence 3344444444446678899999999999999999999999777 5888888888888888888888877765421
Q ss_pred ------c-----------------------------------h----hHHH-HHHHHHHhhhhhhhHHHHHHHhcCCCCc
Q 013411 328 ------S-----------------------------------S----WVPY-AAAVFSILSVFSHPCLRTIVSKQVASNE 361 (443)
Q Consensus 328 ------~-----------------------------------~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 361 (443)
+ . +.++ ..++.|++....++...+|+-|.++++.
T Consensus 95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~ 174 (539)
T PF03137_consen 95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN 174 (539)
T ss_dssp ---------------------------------------------------------SSS--------------------
T ss_pred CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence 0 0 0011 1234466666788999999999999999
Q ss_pred chhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCC------------CC--CccchhHHHHHHHHHHHHHHHHHHhhcC
Q 013411 362 QGKAQGCISGICSFANLVSPLAFSPLTALFLSDR------------AP--FNFPGFSIMCIGFVSMTAFIQSIMIRVA 425 (443)
Q Consensus 362 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (443)
.+...|+...+..+|-++|-.+++...+.+.+.. .+ .+.++..|++.+.+.++..+....+.|+
T Consensus 175 splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 175 SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999888888887776532211 11 1122345666666666665555555443
No 276
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=97.40 E-value=0.013 Score=52.50 Aligned_cols=132 Identities=16% Similarity=0.134 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHHcCcCh--hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcc--hhHH
Q 013411 257 GLQGSMMYYLKAKFHFNK--NQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS--SWVP 332 (443)
Q Consensus 257 ~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 332 (443)
......+.+..+. +.+. ...+.......+...++. +..|.+.||.|||+.+..+.....++.+......+ .+..
T Consensus 20 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
T COG0477 20 LLSPALPLLLSTL-SLSSGRLLYGLLLSAFFLGYAIGS-LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALL 97 (338)
T ss_pred hHHHHHHHHHHHc-CCCchhHHHHHHHHHHHHHHHHHh-hhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3344455555543 4444 356788888888888887 45589999999998777777654444444444444 3333
Q ss_pred HH-HHHHHHhhhhhhhHHHHHHHhcCCC-CcchhHHhHHhH-HHHHHHHHhHHhHHHHHHh
Q 013411 333 YA-AAVFSILSVFSHPCLRTIVSKQVAS-NEQGKAQGCISG-ICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 333 ~~-~~~~~~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~ 390 (443)
.. ....+++.+...+...++..+..|+ +.|+...+.... ....+..++|.+.+.+...
T Consensus 98 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 98 LILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3335677778889999999999997 678888888888 5778888888777777665
No 277
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.23 E-value=0.0016 Score=64.20 Aligned_cols=188 Identities=10% Similarity=0.103 Sum_probs=133.1
Q ss_pred ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Q 013411 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC 317 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (443)
.+.+...+....+......++....-.-++++++++..+.|.+.+.+-++..+...++ .+...|..|-+.+-.+.++++
T Consensus 95 ~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fV-sYfG~r~HrPr~Ig~G~~~m~ 173 (735)
T KOG3626|consen 95 IKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFV-SYFGSRGHRPRWIGIGLVLMG 173 (735)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhH-HHhccccCccceeeechhHHH
Confidence 3444433333333333333444444456678899999999999999999999888666 588888888888889999998
Q ss_pred HHHHHHHhhc-------------------c--------------------------------hhHHHH--HHHHHHhhhh
Q 013411 318 VHMFLYSVAW-------------------S--------------------------------SWVPYA--AAVFSILSVF 344 (443)
Q Consensus 318 ~~~~~~~~~~-------------------~--------------------------------~~~~~~--~~~~~~~~~~ 344 (443)
++.++..+.+ + .|.++. .++.|+|...
T Consensus 174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp 253 (735)
T KOG3626|consen 174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP 253 (735)
T ss_pred HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence 8887776531 0 111111 3444777777
Q ss_pred hhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcC-CCC----------CccchhHHHHHHHHHH
Q 013411 345 SHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSD-RAP----------FNFPGFSIMCIGFVSM 413 (443)
Q Consensus 345 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~-~~~----------~~~~~~~~~~~~~~~~ 413 (443)
.++...+|+-|.+.+++.....|+..++..+|-++|-++++.+...+.+. ..+ .+.++..|++.+.+.+
T Consensus 254 i~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~ 333 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL 333 (735)
T ss_pred CccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999888776444 111 1122346777777777
Q ss_pred HHHHHHHHhhcCC
Q 013411 414 TAFIQSIMIRVAP 426 (443)
Q Consensus 414 ~~~~~~~~~~~~~ 426 (443)
+..+..+.+.|+.
T Consensus 334 ~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 334 FSAVPLFFFPKEL 346 (735)
T ss_pred HHHHHHHhCcccC
Confidence 7777777766543
No 278
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.13 E-value=0.0062 Score=42.35 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=61.2
Q ss_pred hhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhH
Q 013411 255 DAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWV 331 (443)
Q Consensus 255 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (443)
-+.+...+|...+|. ++|..+.|++-+.+.++..++.+.. .++.++.++++.+..+.+...+....+.+.++.+.
T Consensus 8 RFayTplLP~M~~~~-~ls~~~ag~lasaNy~GYL~GAl~~-~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~ 82 (85)
T PF06779_consen 8 RFAYTPLLPLMQADG-GLSLSQAGWLASANYLGYLVGALLA-SRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL 82 (85)
T ss_pred HHHHHhHhHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 344555667766664 9999999999999999999999555 68888877888999999999999998888877654
No 279
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.09 E-value=0.12 Score=49.43 Aligned_cols=124 Identities=10% Similarity=0.009 Sum_probs=79.7
Q ss_pred HHHHcCc-----ChhhHHHHHHHHHHHHHHH-HHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhh----cc-------
Q 013411 266 LKAKFHF-----NKNQFADLMVIAGIAGTIS-QLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVA----WS------- 328 (443)
Q Consensus 266 ~~~~~g~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------- 328 (443)
++|..+. +.+...++.+..-+...+. .++. +++++|++|+++...........+.++++. .+
T Consensus 29 lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly-~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~ 107 (472)
T TIGR00769 29 TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIY-TKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTAL 107 (472)
T ss_pred hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHH
Confidence 4555544 3355666666555544444 4344 689999999988776655555554444332 00
Q ss_pred --------------------hhHHHH-HHHHHHhhhhhhh-HHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHH
Q 013411 329 --------------------SWVPYA-AAVFSILSVFSHP-CLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSP 386 (443)
Q Consensus 329 --------------------~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 386 (443)
.|.... .+...+......+ ..++++.|.+++++..+-+++.....++|..+++.+..+
T Consensus 108 ~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~ 187 (472)
T TIGR00769 108 ADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKY 187 (472)
T ss_pred HHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1111222333334 778999999999999999999999999999999999888
Q ss_pred HHHh
Q 013411 387 LTAL 390 (443)
Q Consensus 387 l~~~ 390 (443)
+.+.
T Consensus 188 ~~~~ 191 (472)
T TIGR00769 188 FSKL 191 (472)
T ss_pred HHHh
Confidence 8753
No 280
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.0016 Score=59.91 Aligned_cols=144 Identities=14% Similarity=0.088 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh----cccch-HHHHHHH
Q 013411 240 TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT----VGEAR-LLSFGLL 314 (443)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~-~~~~~~~ 314 (443)
.+.....+.+...+.+..-.++.|+|+++. |.+....+.......+..++.+++. |..+|| +|||| .+..+..
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvphk~~S~iw~~gPi~G~~vQP~v-G~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTPYLQSL-GVPHKWSSIIWLCGPLSGLLVQPLV-GSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHc-CCCcccccccccccccccceecccc-cccccccccccccccchHHHhhH
Confidence 344444555556666666778899999886 9999998888888889999999666 789996 56665 4555666
Q ss_pred HHHHHHHHHHhhcchh-------------HHHHHHHHH-----HhhhhhhhHHHHHHHhcCCCCcchh-HHhHHhHHHHH
Q 013411 315 FGCVHMFLYSVAWSSW-------------VPYAAAVFS-----ILSVFSHPCLRTIVSKQVASNEQGK-AQGCISGICSF 375 (443)
Q Consensus 315 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~g~-~~g~~~~~~~~ 375 (443)
...++.+++++..+.. ..+...++| +..........++..|+..++++.+ +++....+..+
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av 190 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV 190 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence 6677777776654311 111122222 3344566788899999998887777 99999999999
Q ss_pred HHHHhHHhHH
Q 013411 376 ANLVSPLAFS 385 (443)
Q Consensus 376 g~~~~~~~~g 385 (443)
|+.+|-.+.+
T Consensus 191 GnvLGY~~g~ 200 (498)
T KOG0637|consen 191 GNVLGYALGS 200 (498)
T ss_pred cceeeeeccc
Confidence 9888876665
No 281
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.015 Score=54.75 Aligned_cols=151 Identities=21% Similarity=0.212 Sum_probs=95.7
Q ss_pred cchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccc---ccccchhhH
Q 013411 6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD---KYGRKALLT 82 (443)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D---r~Grr~~~~ 82 (443)
++..+....+...+.........|.-+.-. ...-..+....++-.-...++..++..+.+.+.+ |+||++++.
T Consensus 241 ~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft----~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~ 316 (461)
T KOG3098|consen 241 KMLLLFPFFFYTGLETSFWISIYPTCISFT----RKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVL 316 (461)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchhhhhh----hhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchh
Confidence 344444444444454444444444433221 0111122233444445555666666666666664 678999999
Q ss_pred HHHHHhHHHHHHHHhccC---------------CchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHH
Q 013411 83 VPITLSIIPLAILAYSRS---------------RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFS 147 (443)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~---------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 147 (443)
++..+..++.++.-.... .+.+...++.-++.|+ +.+......+.++.+.. +++|..+.++..
T Consensus 317 ~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~-~D~~~~t~~~~ii~~~~-~~~~~~~fsi~k 394 (461)
T KOG3098|consen 317 IGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF-GDACFNTQRYVIIALLY-PDDRAQAFSLFK 394 (461)
T ss_pred HHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh-HHHHHHHHHHHHHHHHh-cCchHHHHHHHH
Confidence 988888877776654321 0125677888899999 99999999999999999 588888888887
Q ss_pred HHhhhhhhhhhhhhh
Q 013411 148 GIVSGAFVCGTISAR 162 (443)
Q Consensus 148 ~~~~~g~~~g~~l~~ 162 (443)
.-..++..++-....
T Consensus 395 fyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 395 FYQSVASCVAFFFSP 409 (461)
T ss_pred HHHHHHHHHHhhhhh
Confidence 777777666544433
No 282
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=96.79 E-value=0.1 Score=44.80 Aligned_cols=51 Identities=6% Similarity=-0.142 Sum_probs=33.4
Q ss_pred CcchhHHHHHHHHhhhhhhhh--hhhhh-----h--hchhhHHHHHHHHHHHHHHHHHHh
Q 013411 137 GRRASVFGIFSGIVSGAFVCG--TISAR-----F--ISTSAAFQAATAGSIISAVYMRIF 187 (443)
Q Consensus 137 ~~r~~~~~~~~~~~~~g~~~g--~~l~~-----~--~~w~~~f~~~~~~~~~~~~~~~~~ 187 (443)
|+|+........+.++|.++. |.+-. . -+|++.+.+.+++.++-+++..++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666667777777887664 33322 1 169999988888777766555444
No 283
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.59 E-value=0.68 Score=43.77 Aligned_cols=151 Identities=15% Similarity=0.105 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH-
Q 013411 240 TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV- 318 (443)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~- 318 (443)
..+.+....++..+..-......+.++.+.+.-+-.-.+.+-...++..++.+..+ |.+.||..|.+....+.+..-+
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~v-G~~iD~~~Rl~~~~~~l~~Qn~s 81 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWV-GRWIDRSPRLKVIRTSLVVQNLS 81 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHH-HHHHhCCcchhhHHHHHHHHHHH
Confidence 34567777888888888888888999998866555444555555666666666566 6899999998876655433222
Q ss_pred ---HHHHH---Hhhcc-----hhHHHHHHHHHHhhhh---hhhHH------HHHHHhcC--CCCcchhHHhHHhHHHHHH
Q 013411 319 ---HMFLY---SVAWS-----SWVPYAAAVFSILSVF---SHPCL------RTIVSKQV--ASNEQGKAQGCISGICSFA 376 (443)
Q Consensus 319 ---~~~~~---~~~~~-----~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~--p~~~~g~~~g~~~~~~~~g 376 (443)
++.++ ..... .+.....+......+. ..... .-.+..+. +++...+.++...-.-...
T Consensus 82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~c 161 (432)
T PF06963_consen 82 VAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFC 161 (432)
T ss_pred HHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHH
Confidence 11111 11111 1222221111111111 11111 12222333 3445556666666666689
Q ss_pred HHHhHHhHHHHHHhh
Q 013411 377 NLVSPLAFSPLTALF 391 (443)
Q Consensus 377 ~~~~~~~~g~l~~~~ 391 (443)
..++|.+.|.+.+..
T Consensus 162 kllaPl~vG~l~t~~ 176 (432)
T PF06963_consen 162 KLLAPLFVGLLMTFA 176 (432)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999998863
No 284
>PRK03612 spermidine synthase; Provisional
Probab=96.59 E-value=0.041 Score=53.55 Aligned_cols=119 Identities=13% Similarity=-0.025 Sum_probs=69.6
Q ss_pred hhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHH---hHHHHHHHHhccC--CchhHHHHHHHHhhhhh
Q 013411 43 CSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL---SIIPLAILAYSRS--RNFFYAYYVLRTLTAMV 117 (443)
Q Consensus 43 ~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~---~~i~~~~~~~~~~--~~~~~~l~~~r~l~G~~ 117 (443)
++.+....+.+.+++..|..+|+.+.|++.++--|+.. ..-..+ .+++..+...... ......+....++.++
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~- 122 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL- 122 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 56677788999999999999999999988744333322 111111 1111111111111 0001223344456676
Q ss_pred ccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh
Q 013411 118 CEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI 164 (443)
Q Consensus 118 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~ 164 (443)
..|+..|....+..+... ++-++..|.......+|.++|.++.+++
T Consensus 123 l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 123 LIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 777778877776665332 2345667777888888888887776653
No 285
>PRK03612 spermidine synthase; Provisional
Probab=96.58 E-value=0.52 Score=46.01 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH---HHHHH
Q 013411 244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLF---GCVHM 320 (443)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~ 320 (443)
+.+..++.+++.........-.+...+|-+....+.+.+..-.+..+|+ .+++++.++..++. ...-..+ ..++.
T Consensus 19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs-~l~~~~~~~~~~~~-~~~e~~i~l~~~~~~ 96 (521)
T PRK03612 19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGA-LLSKYLLRDAAAGF-VAVELLLALLGGLSA 96 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHHHHH-HHHHHHHHHHHHHHH
Confidence 4445555566666666666677777778888888888777777777777 34355543322221 1111111 11111
Q ss_pred HHHHhhcc----hhH--HHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHH
Q 013411 321 FLYSVAWS----SWV--PYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTA 389 (443)
Q Consensus 321 ~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 389 (443)
.++..... ... ....++.++..|+..|....+..+... +..|+..|-......+|+.+|+++.+++.-
T Consensus 97 ~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 97 LILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 11111111 111 111233456666677776666654332 345677788888889999999999887765
No 286
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.44 E-value=0.018 Score=53.28 Aligned_cols=109 Identities=14% Similarity=0.194 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHH--HhHHH---HHHHHhccCCchhHHHHHHHHhhhhhccchh
Q 013411 48 YLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT--LSIIP---LAILAYSRSRNFFYAYYVLRTLTAMVCEGSI 122 (443)
Q Consensus 48 ~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~--~~~i~---~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 122 (443)
.+..+...+|.+|-.++.--...+ |+ |++.+.+.+ +..+. ....-+.++ .|..++.-+..|+ .+|..
T Consensus 281 ~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fips---i~ivf~lif~eGL-lGGa~ 352 (402)
T PF02487_consen 281 DQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPS---IWIVFVLIFYEGL-LGGAS 352 (402)
T ss_pred HHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-hhhHH
Confidence 456677788888877765433222 33 444443332 22222 222334566 8889999999999 77888
Q ss_pred hhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh
Q 013411 123 HCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI 164 (443)
Q Consensus 123 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~ 164 (443)
+......+.|-.|+++|..+++..+.+.++|..++.+++-.+
T Consensus 353 YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 353 YVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999988877654
No 287
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=96.39 E-value=0.001 Score=60.13 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=3.6
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHh
Q 013411 331 VPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLA 383 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~ 383 (443)
..+...++++..|......+.+..+.+++++|..+-.+....-..|-.+|..+
T Consensus 251 ~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 251 FIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp ----------------HHHH---------------------------------
T ss_pred HHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446677888888888999999999998888888777777777766666554
No 288
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.37 Score=43.87 Aligned_cols=140 Identities=12% Similarity=0.054 Sum_probs=76.8
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHH-HHHHHhhh-----hcccchHH-HH
Q 013411 239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQL-IMMPVLAP-----TVGEARLL-SF 311 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~-----~~~~~~~~-~~ 311 (443)
+.+..+...+..++....-.. .+|..++.. |.|-.+.+.+... ..+.++ ++...+.| |+||||.. .-
T Consensus 31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak-~vSyt~~a~fS~a----y~P~sLKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAK-GVSYTSQAIFSFA----YWPFSLKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh-hhHHHhcCC-Ccchhhhhhhhhh----hhHHHHHHHHHhhhHHHHHHhhccccceeee
Confidence 445555566666666554444 788888854 6666654443221 112111 11123555 99988753 33
Q ss_pred HHHHHHHHHHHHHhhcchh---------HHHH---HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHH
Q 013411 312 GLLFGCVHMFLYSVAWSSW---------VPYA---AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLV 379 (443)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~ 379 (443)
+..+.+..+..+....+.+ .... ..++.+..+..-.+...+......+++.|-+.........+|.++
T Consensus 105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL 184 (510)
T KOG3574|consen 105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL 184 (510)
T ss_pred hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh
Confidence 4455555555554433211 1112 233344455555677777777888888877766666666666666
Q ss_pred hHHhH
Q 013411 380 SPLAF 384 (443)
Q Consensus 380 ~~~~~ 384 (443)
+..++
T Consensus 185 ~~~if 189 (510)
T KOG3574|consen 185 GNVVF 189 (510)
T ss_pred hccee
Confidence 65544
No 289
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=95.55 E-value=0.19 Score=46.93 Aligned_cols=109 Identities=12% Similarity=0.024 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhcc--h-------hHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCC---cchhHHhHHhHHH
Q 013411 307 RLLSFGLLFGCVHMFLYSVAWS--S-------WVPYA-AAVFSILSVFSHPCLRTIVSKQVASN---EQGKAQGCISGIC 373 (443)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~ 373 (443)
+.+..+.++..++.+++..... . +..++ ..++++|.+..=|...++..|.++++ +|.+.+.......
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 4667788888888777544331 1 23333 56678899999999999999999866 4566777888899
Q ss_pred HHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 374 SFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 374 ~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
++|..+++.+.+++.+..+ ....|.+.++..+++....+..+
T Consensus 82 n~G~~~~~~~~~~i~~~~~--------~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYG--------WFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS---------HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhHhhcccchhhccccc--------hhhhhhHHHHHHHHHHHHHHhCC
Confidence 9999999999999987642 24567777777777766655444
No 290
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=95.20 E-value=0.0079 Score=50.99 Aligned_cols=145 Identities=12% Similarity=0.044 Sum_probs=74.5
Q ss_pred cChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhh-hhcccchHHHHHHHH
Q 013411 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLA-PTVGEARLLSFGLLF 315 (443)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~ 315 (443)
++-.+....+...+.-.....-..+++.|..+...++....+++-++..+.....+.+. .-.- ++...|.....|.+.
T Consensus 199 ~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~-~eipwngkrlKayYsaGgii 277 (412)
T KOG4830|consen 199 GHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVN-SEIPWNGKRLKAYYSAGGII 277 (412)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhc-ccCCcCcceeeeeeecccHH
Confidence 33445556666666666556666777777776666666655555555555555444221 1110 111122222333333
Q ss_pred HHHHHHHHHhhcchh---HHHHHHHHHHhhhhhhhHHHHHHHhcCCCC--cchhHHhHHhHHHHHHHHHhHH
Q 013411 316 GCVHMFLYSVAWSSW---VPYAAAVFSILSVFSHPCLRTIVSKQVASN--EQGKAQGCISGICSFANLVSPL 382 (443)
Q Consensus 316 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~~~~ 382 (443)
...+...+.+.+..+ ...+.+++|+..+.......++..++..++ ..+-..|..+++-.+...++-.
T Consensus 278 wifcga~ilLlpr~i~symyAisvfIGIAnAimlvtslsitavli~~~~~~~aFv~GamSF~DKlS~GiA~~ 349 (412)
T KOG4830|consen 278 WIFCGAVILLLPRGIKSYMYAISVFIGIANAIMLVTSLSITAVLINKNTESGAFVYGAMSFFDKLSNGIAYQ 349 (412)
T ss_pred HHHhhhheeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEEehHHHHHhhcccHHHH
Confidence 333333333333222 233355567777766666666666665543 4455567777766666555543
No 291
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=94.78 E-value=0.27 Score=44.51 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=47.3
Q ss_pred cchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHH
Q 013411 6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI 85 (443)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~ 85 (443)
....+..+.++...+.-+---....++.... +.|-.....-..+-....++..++.|.+.|+..|+|++....
T Consensus 28 ~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~-------gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L 100 (503)
T KOG2601|consen 28 TVIFLYLGYFLTTWGDRMWEFSVSLFMILLG-------GNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWL 100 (503)
T ss_pred eeehhhHHHHHhHhhHhHHHHHHHHHHHHHc-------CceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHH
Confidence 3445667777777776665555555554421 112222333334445556778889999999999999888766
Q ss_pred HHh
Q 013411 86 TLS 88 (443)
Q Consensus 86 ~~~ 88 (443)
.+-
T Consensus 101 ~lq 103 (503)
T KOG2601|consen 101 LLQ 103 (503)
T ss_pred hhc
Confidence 544
No 292
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=94.48 E-value=3.5 Score=37.01 Aligned_cols=69 Identities=12% Similarity=0.048 Sum_probs=49.4
Q ss_pred HHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCC
Q 013411 62 LVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVP 135 (443)
Q Consensus 62 ~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~ 135 (443)
+..+++.+.+.+++|-|+++.++......... .+-.+.+..++-.-...|+ +.+..+..--+|+++.-.
T Consensus 72 ~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA----~Nl~pr~~tlVPa~~~~G~-aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 72 IDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA----ANLEPRYETLVPAGLVLGM-AAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----hhcchhHHhhccHHHhhcc-ccccccccCcceecHHHH
Confidence 44555555888999999999888776654322 2223338889999999999 888888777777766554
No 293
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=93.81 E-value=0.49 Score=45.04 Aligned_cols=148 Identities=17% Similarity=0.103 Sum_probs=90.3
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhH-HHHHHHHHHHhHHHHHhhhcccccccccccc--hhhHH
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAI-YLSGFQQAIIGLGTLVMMPLVGNLSDKYGRK--ALLTV 83 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr--~~~~~ 83 (443)
.+...+..++.++-.-.+.|.+....+.. +.+.+. ...-.....++++-.+|..+..+.. .-++| ++.+.
T Consensus 271 i~~~~~~vf~~F~vTL~vFPgv~~~i~~~------~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~ 343 (437)
T TIGR00939 271 VWLLAFSVVFVFTVTLSVFPAITTAVTSS------GLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPIL 343 (437)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEEeecc------CCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHH
Confidence 34455566666555555555543322221 111111 3445778888999999888665431 11222 33322
Q ss_pred H--HHHhHHHHHHHHhcc------CCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhh
Q 013411 84 P--ITLSIIPLAILAYSR------SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFV 155 (443)
Q Consensus 84 ~--~~~~~i~~~~~~~~~------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 155 (443)
+ =+++..-.++|..-+ -.++-+..++.-++.|+ ..|-.....+.+..+..+++||..+-.+...+..+|..
T Consensus 344 s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gl-tnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~ 422 (437)
T TIGR00939 344 SFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGF-SNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLA 422 (437)
T ss_pred HHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHH-hhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 222322333333221 00125677788999999 99988888999999999999999999999988888888
Q ss_pred hhhhhhh
Q 013411 156 CGTISAR 162 (443)
Q Consensus 156 ~g~~l~~ 162 (443)
+|..++-
T Consensus 423 ~Gs~l~~ 429 (437)
T TIGR00939 423 LGAVLSF 429 (437)
T ss_pred HHHHHHH
Confidence 8876653
No 294
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=93.75 E-value=3.4 Score=35.81 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=13.6
Q ss_pred hhhhhHHHHHHHHHHHc----CcChhhHHHHHHH
Q 013411 254 ADAGLQGSMMYYLKAKF----HFNKNQFADLMVI 283 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~ 283 (443)
..++.+..=..|.+++- +-|.....+.++-
T Consensus 193 vlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~ 226 (254)
T PF07857_consen 193 VLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSH 226 (254)
T ss_pred HHHhcccchHHHHHhCccccCCCCCcchheeHHH
Confidence 33444433334666653 3344444455543
No 295
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=91.80 E-value=0.52 Score=40.73 Aligned_cols=125 Identities=12% Similarity=0.041 Sum_probs=65.8
Q ss_pred HHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhh
Q 013411 265 YLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSV 343 (443)
Q Consensus 265 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 343 (443)
|+-+.+|+...++|.++.......++.+.+. |-+.||-|||+.-+.-.+...++++- -..++...... -++-|+..+
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtiv-gSLaDkqGRKracvtycitYiLsCiT-KhSpqYkVLmVGR~LGGiaTs 139 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIV-GSLADKQGRKRACVTYCITYILSCIT-KHSPQYKVLMVGRVLGGIATS 139 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHH-HHHHhhhccccceeeehHHHHHHHHh-hcCCceEEEeehhhhhhHHHH
Confidence 4456678888888887765555556666466 68999999998655444444444331 12222222222 334455555
Q ss_pred hhhhHHHHH-HHhcCC-----CCcchhHHhHHh-HHHHHHHHHhHHhHHHHHHhh
Q 013411 344 FSHPCLRTI-VSKQVA-----SNEQGKAQGCIS-GICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 344 ~~~~~~~~~-~~~~~p-----~~~~g~~~g~~~-~~~~~g~~~~~~~~g~l~~~~ 391 (443)
..+...-++ +.|... .+-....++=.. ..+.+-.+++...+..+.|.+
T Consensus 140 LLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~ 194 (454)
T KOG4332|consen 140 LLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF 194 (454)
T ss_pred HHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 555555554 455442 222222222222 222344455555555666664
No 296
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=91.68 E-value=6.5 Score=38.95 Aligned_cols=147 Identities=16% Similarity=0.103 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-cccchHHHHHHHHHHHHHH
Q 013411 243 QAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT-VGEARLLSFGLLFGCVHMF 321 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~ 321 (443)
..+..-.+...++.+....+-.|+.+.++.+...+............... ..+++++|. +||-+++.++..+..++..
T Consensus 41 ~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~-l~g~~laD~f~gry~tI~~~s~i~~~G~~ 119 (571)
T KOG1237|consen 41 FILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLP-LLGAFLADSFLGRYFTINIGSLISLLGLF 119 (571)
T ss_pred HHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444556666677777778888888888887666655555555555554 556789997 5888888888888877765
Q ss_pred HHHhhcchh-------------------------HHHH-HHHHHHhhhhhhhHHHHHHHhcCCC----C--cchhHHhHH
Q 013411 322 LYSVAWSSW-------------------------VPYA-AAVFSILSVFSHPCLRTIVSKQVAS----N--EQGKAQGCI 369 (443)
Q Consensus 322 ~~~~~~~~~-------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~----~--~~g~~~g~~ 369 (443)
++....... .++. ..+..++.+..-|...+.-.|-+++ + .+..-+...
T Consensus 120 ~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~ 199 (571)
T KOG1237|consen 120 GLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWF 199 (571)
T ss_pred HHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHH
Confidence 554322100 0111 1222345666678888888888872 2 223566677
Q ss_pred hHHHHHHHHHhHHhHHHHHHh
Q 013411 370 SGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 370 ~~~~~~g~~~~~~~~g~l~~~ 390 (443)
....+.|..++..+.-+..+.
T Consensus 200 yf~~~~g~l~a~t~~vyiq~~ 220 (571)
T KOG1237|consen 200 YFSQNGGALLAQTVLVYIQDN 220 (571)
T ss_pred HHHHHHHHHHHHHHHHhhhhc
Confidence 777778888887777777655
No 297
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=90.70 E-value=1.8 Score=40.20 Aligned_cols=131 Identities=12% Similarity=0.126 Sum_probs=86.8
Q ss_pred hcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHH-HhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHH---
Q 013411 21 TSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAI-IGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILA--- 96 (443)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~-~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~--- 96 (443)
+.....+.|.+..+.. .+...+....-+...+ +++...+|.+.+.++-++= ||+..+.+ ++-.+..-++.
T Consensus 259 y~VTLsiFPg~~~~~~----~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v-~lR~lfiPlF~~cn 332 (406)
T KOG1479|consen 259 YFVTLSIFPGFCSEVK----SSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPV-LLRLLFIPLFLLCN 332 (406)
T ss_pred eeeeeEecchhhcccc----cCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHH-HHHHHHHHHHHHhc
Confidence 4455556777766632 1222234555666666 9999999988888776653 44433332 22222222222
Q ss_pred ------hccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhh
Q 013411 97 ------YSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA 161 (443)
Q Consensus 97 ------~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~ 161 (443)
+-.+ -+++++.-.+.|+ ..|=.....+.+..+-.|++++-.+-.+.......|...|..++
T Consensus 333 ~~~~~v~~~~---~~~~~~l~~~lgl-snGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 333 YPPLPVVFES---DGWFIFLMSLLGL-SNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred cCCCCceecC---chHHHHHHHHHHh-ccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 1233 5778889999999 98888888999999999999988887777777777777776655
No 298
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=90.12 E-value=7.3 Score=33.37 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=16.8
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHH
Q 013411 294 IMMPVLAPTVGEARLLSFGLLFGCVH 319 (443)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 319 (443)
+-+..++.|+..|.+.+.+..++.+.
T Consensus 258 igGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 258 IGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred hhhHHHhhhheeEEEEEecchhHHHH
Confidence 33356778888887776665555444
No 299
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=89.25 E-value=22 Score=34.47 Aligned_cols=42 Identities=7% Similarity=-0.060 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHH
Q 013411 348 CLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTA 389 (443)
Q Consensus 348 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 389 (443)
..+.++.|.++.++..+.+++.....++|..++..+..++.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999999888888877
No 300
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=89.06 E-value=3.8 Score=39.11 Aligned_cols=145 Identities=13% Similarity=0.050 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHH-cCcChhhHHHHHH--HHHHHHHHHHHHHHHHhhhhcccchHHH-HHHHHHHH
Q 013411 243 QAAIVAFLSNLADAGLQGSMMYYLKAK-FHFNKNQFADLMV--IAGIAGTISQLIMMPVLAPTVGEARLLS-FGLLFGCV 318 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~ 318 (443)
.+++.+++++..........|..+++. .+.|-.+.|.+.. ...-.-++-++++=....+|+||||..+ -...+.++
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~ 83 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGI 83 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHH
Confidence 345556666655544445678888871 1455444333211 1111223333344345567899887543 34444555
Q ss_pred HHHHHHhhc----------ch---------hHH-----HHHH-HHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHH
Q 013411 319 HMFLYSVAW----------SS---------WVP-----YAAA-VFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGIC 373 (443)
Q Consensus 319 ~~~~~~~~~----------~~---------~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 373 (443)
.++.++... +. ... ...+ ++.+..+..-.+....+.....++.++-+....+...
T Consensus 84 ~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~ 163 (544)
T PF13000_consen 84 LMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQ 163 (544)
T ss_pred HHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHh
Confidence 444443322 10 001 1111 1222233334556666667777788877766665555
Q ss_pred HHHHHHhHHhHHHH
Q 013411 374 SFANLVSPLAFSPL 387 (443)
Q Consensus 374 ~~g~~~~~~~~g~l 387 (443)
++|.+++-.++=.+
T Consensus 164 ~~Gyfls~tvFlal 177 (544)
T PF13000_consen 164 TAGYFLSFTVFLAL 177 (544)
T ss_pred hhhHHHHHHHHHhh
Confidence 66666665555443
No 301
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=86.09 E-value=0.26 Score=44.61 Aligned_cols=150 Identities=19% Similarity=0.173 Sum_probs=3.6
Q ss_pred chhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHH-HHHHHHhHHHHHhhhcccccccc-cccchhhHHH
Q 013411 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSG-FQQAIIGLGTLVMMPLVGNLSDK-YGRKALLTVP 84 (443)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~~~~~ 84 (443)
.+...+..++.++..-...|.+..-.+... ..+ .+..... .....++++-.+|....++.-=+ -.+|++.+.+
T Consensus 145 i~~~~~~i~~~f~vTl~~FP~it~~v~s~~---~~~--~~~~f~pv~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s 219 (309)
T PF01733_consen 145 IWPYALSIFLVFFVTLSVFPGITSAVQSSN---NPD--WSSYFVPVVLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILS 219 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhheeeeccceeeeeeccc---cCC--CccHHHHHHHHHHHHHHHHhcchhcceeEecccccccHHHHH
Confidence 444455555555555555665533222211 111 1112222 45678889999888877763211 1344444332
Q ss_pred --HHHhHHHHHHHHhccC-------CchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhh
Q 013411 85 --ITLSIIPLAILAYSRS-------RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFV 155 (443)
Q Consensus 85 --~~~~~i~~~~~~~~~~-------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 155 (443)
=+++.-..++|..-++ .++-+..++.-++.|+ ..|-.....+.+..+..++++|..+-.+.......|..
T Consensus 220 ~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~-TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~ 298 (309)
T PF01733_consen 220 LLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGF-TNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLF 298 (309)
T ss_dssp ------------------------------------------------HHHH----------------------------
T ss_pred HHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHH-ccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 1222222223312111 1114667888899999 99988889999999999999999998888888888888
Q ss_pred hhhhhhh
Q 013411 156 CGTISAR 162 (443)
Q Consensus 156 ~g~~l~~ 162 (443)
+|..++-
T Consensus 299 ~Gs~ls~ 305 (309)
T PF01733_consen 299 IGSVLSF 305 (309)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 8876653
No 302
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.78 E-value=12 Score=27.09 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=28.8
Q ss_pred CCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhh
Q 013411 359 SNEQGKAQGCISGICSFANLVSPLAFSPLTALFL 392 (443)
Q Consensus 359 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 392 (443)
++.++.+.++--..-.+++++.....||+.|++-
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~a 70 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFA 70 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577888888888888999999999999999963
No 303
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=81.59 E-value=4.9 Score=35.82 Aligned_cols=74 Identities=14% Similarity=0.101 Sum_probs=57.1
Q ss_pred HhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh
Q 013411 87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI 164 (443)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~ 164 (443)
++.+.-....+.++ +|..++.-+.-|+ -+|..++...--+.+-.++++|-.+++....+-++|..++..++--+
T Consensus 328 ~ff~~~a~~~ftps---i~ivf~lI~~EGL-lGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 328 LFFLLQAWYWFTPS---IWIVFALILFEGL-LGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHhccH---HHHHHHHHHHHhh-cCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 33444455567788 8988999999999 66666666666677777889999999999999999988887776544
No 304
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.36 E-value=8.4 Score=27.90 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHhHHHHHhhhccccccccc-ccchhhHHHHH
Q 013411 46 AIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-GRKALLTVPIT 86 (443)
Q Consensus 46 s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-Grr~~~~~~~~ 86 (443)
..+..++-.+.-.++..+.....||+.||| |.++..++..+
T Consensus 40 k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~l 81 (116)
T COG5336 40 KGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFL 81 (116)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 334456666777788888888899999987 55554444333
No 305
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=74.27 E-value=26 Score=31.74 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhhcccchHHHHHHHHHHHH
Q 013411 289 TISQLIMMPVLAPTVGEARLLSFGLLFGCVH 319 (443)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 319 (443)
+....+. +.+++++|-|+.+.++.......
T Consensus 72 ~~s~m~~-~~~Ir~~g~K~tm~lav~~Y~ly 101 (390)
T KOG3097|consen 72 IDSSMFM-PLLIRFLGTKWTMVLAVFPYALY 101 (390)
T ss_pred HHHHHHH-HHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444333 58889999999988776665443
No 306
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=70.91 E-value=77 Score=31.24 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc
Q 013411 281 MVIAGIAGTISQLIMMPVLAPTVGE 305 (443)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (443)
.....+.+.+++ ..++++.+.++.
T Consensus 303 i~~y~~~~~iaG-y~S~~~yk~~~g 326 (521)
T PF02990_consen 303 IILYALTSFIAG-YVSARLYKSFGG 326 (521)
T ss_pred HHHHHHHhhHHH-HHHHHHHHHcCC
Confidence 334455555555 333455565554
No 307
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=68.43 E-value=51 Score=28.82 Aligned_cols=103 Identities=13% Similarity=0.165 Sum_probs=54.1
Q ss_pred HHHHHHHhHHHHHhhhcccccccc-cccchhhH----HHHHHhHHHHHHH-HhccCC-chhHHHHHHHHhhhhhccchhh
Q 013411 51 GFQQAIIGLGTLVMMPLVGNLSDK-YGRKALLT----VPITLSIIPLAIL-AYSRSR-NFFYAYYVLRTLTAMVCEGSIH 123 (443)
Q Consensus 51 g~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~~~----~~~~~~~i~~~~~-~~~~~~-~~~~~l~~~r~l~G~~~~~~~~ 123 (443)
....-++..|..+|....|++... +.||+-+. .+.++..++.++. .+..+. ..+..+++.-++.|++.-|. .
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~Wgi-Q 222 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGI-Q 222 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhh-h
Confidence 455666777778888888988874 45665444 2344444444442 122221 12567888888888833333 2
Q ss_pred hhhhhhhhcCCCCCcchhHHHHHHHHhhhhhh
Q 013411 124 CLSLAYVADNVPPGRRASVFGIFSGIVSGAFV 155 (443)
Q Consensus 124 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 155 (443)
++ .-.+..-.++.++.+.--.++..+++|.+
T Consensus 223 ~V-iL~lPhEyK~~~pk~ig~~Fg~iWGfGY~ 253 (267)
T PF07672_consen 223 GV-ILNLPHEYKGYNPKKIGIQFGLIWGFGYI 253 (267)
T ss_pred HH-HhcChhhhcCCCcceehhHHHHHHHHHHH
Confidence 32 22333333333333333334445555544
No 308
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=66.56 E-value=1.1e+02 Score=28.50 Aligned_cols=71 Identities=11% Similarity=0.002 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH
Q 013411 244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLF 315 (443)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 315 (443)
+....+...+.--........|+.+..|-+-...+..-..-+...++...++ |...|+..|+|++.....+
T Consensus 32 Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~iv-Gq~vDg~sr~Kvi~~~L~l 102 (503)
T KOG2601|consen 32 LYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIV-GQWVDGMSRVKVIQTWLLL 102 (503)
T ss_pred hhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHH-HHHhcchhHHHHHHHHHhh
Confidence 4445555555555555566777777666555554555555555555555466 5788999998877655443
No 309
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=57.30 E-value=20 Score=32.82 Aligned_cols=98 Identities=18% Similarity=0.133 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhHHHHHhhhcccccccccccchhhHH--HHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhh
Q 013411 48 YLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV--PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCL 125 (443)
Q Consensus 48 ~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 125 (443)
..-|..-++..+..+++.+..|.+--++.|..-+++ +...-+...++++-+++ .|...++.++.+. ......++
T Consensus 271 vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~---Iw~~Ya~yvlfr~-~y~l~iti 346 (433)
T KOG3810|consen 271 VYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQH---IWVCYAGYVLFRV-IYQLTITI 346 (433)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccc---eehhhhhHHHHHh-hHhhhhhH
Confidence 345788888889999999999999988888644444 43444444455556666 8887777777776 66666777
Q ss_pred hhhhhhcCCCCCcchhHHHHHHHH
Q 013411 126 SLAYVADNVPPGRRASVFGIFSGI 149 (443)
Q Consensus 126 ~~~~i~~~~~~~~r~~~~~~~~~~ 149 (443)
+..-+++...++.-|..+|+....
T Consensus 347 A~~~iA~nL~~e~~gLvFGiNTFv 370 (433)
T KOG3810|consen 347 ATFQIARNLSSELFGLVFGINTFV 370 (433)
T ss_pred HHHHHHHhhhhhhheeeeehHHHH
Confidence 878888888878888888776543
No 310
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=48.62 E-value=1.1e+02 Score=28.17 Aligned_cols=173 Identities=11% Similarity=-0.012 Sum_probs=0.0
Q ss_pred CCCCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchh
Q 013411 1 MEKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKAL 80 (443)
Q Consensus 1 m~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~ 80 (443)
|+.+..+......+..+.+.+-.....+..+. .+-+..|.+++.+.|-....+|+...-++.|.--.-+.
T Consensus 6 ~~~~alL~laVf~~aa~GlvyElal~tLatyL----------lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~F 75 (508)
T COG4262 6 NRWRALLLLAVFVCAACGLVYELALGTLATYL----------LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARF 75 (508)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----------cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHH
Q ss_pred hHHHHHHhHHHHHHHHhcc---------CCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhh
Q 013411 81 LTVPITLSIIPLAILAYSR---------SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVS 151 (443)
Q Consensus 81 ~~~~~~~~~i~~~~~~~~~---------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 151 (443)
...-.++..++..-.+... + -+.+.+.-++.|. -.|...|..+.++.. ..++-....+.....-.
T Consensus 76 v~vElllgligg~Sa~~ly~~FA~~~~~~---~~Vly~lt~vIG~-LVG~EiPL~mrml~~--r~a~~k~~~s~vl~~DY 149 (508)
T COG4262 76 VDVELLLGLIGGVSAAALYLLFALESAPS---RLVLYALTAVIGV-LVGAEIPLLMRMLQR--RQAKAKDLGSRVLTLDY 149 (508)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhccchH---HHHHHHHHHHHHH-HHhcchHHHHHHHHH--HHHHHHhhhhhhhhhHh
Q ss_pred hhhhhhhhhhhhh-----chhhHHHHHHHHHHHHHHHHHHhcc
Q 013411 152 GAFVCGTISARFI-----STSAAFQAATAGSIISAVYMRIFLP 189 (443)
Q Consensus 152 ~g~~~g~~l~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~~ 189 (443)
+|.+.|.++-.++ |--..-...+.+.++..+...+.++
T Consensus 150 LGal~~gLl~p~lllP~LGl~rta~laG~~Nl~aAvv~~fllr 192 (508)
T COG4262 150 LGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAAVVTLFLLR 192 (508)
T ss_pred hhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHH
No 311
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=45.24 E-value=57 Score=28.55 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=41.5
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHH--------HHhhhhcccch
Q 013411 247 VAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMM--------PVLAPTVGEAR 307 (443)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~ 307 (443)
..+..-..-.+..+++-.|+.+. |.++...+.++.+..+...+..++.+ ++-.||+|||.
T Consensus 25 GHmlNDitAScWFTYlllfltqi-glsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~ 92 (412)
T KOG4830|consen 25 GHMLNDITASCWFTYLLLFLTQI-GLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRM 92 (412)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHh-cCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhccee
Confidence 34444444455666777788876 99998888888888888877774441 24568998874
No 312
>PRK15015 carbon starvation protein A; Provisional
Probab=43.00 E-value=3.7e+02 Score=27.24 Aligned_cols=104 Identities=14% Similarity=0.215 Sum_probs=55.8
Q ss_pred hHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhh-hhcCCCC
Q 013411 58 GLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAY-VADNVPP 136 (443)
Q Consensus 58 ~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~-i~~~~~~ 136 (443)
.....++..-+|.++-+-|..-- +..+..++...+..+.. ++.-.+.+=+.+. =..-..|+..-. =.|+.|.
T Consensus 11 ~~~a~~ga~~~~~~al~rge~mn---al~lv~aa~~~y~iaYr---fYgr~ia~kv~~l-D~~r~TPA~~~~DG~DYvPt 83 (701)
T PRK15015 11 TVLSVMGAFALGYIALNRGEQIN---ALWIVVASVCIYLIAYR---FYGLYIAKNVLAV-DPTRMTPAVRHNDGLDYVPT 83 (701)
T ss_pred HHHHHHHHHHheeeeecCCCchh---HHHHHHHHHHHHHHHHH---HHHHHHHHHhccC-CCCCCCCceECCCCCCcCcC
Confidence 34445666677777766665521 11111222222233333 4444455555565 433333433222 2466665
Q ss_pred CcchhHHHHH-HHHhhhhhhhhhhhhhhhchhhH
Q 013411 137 GRRASVFGIF-SGIVSGAFVCGTISARFISTSAA 169 (443)
Q Consensus 137 ~~r~~~~~~~-~~~~~~g~~~g~~l~~~~~w~~~ 169 (443)
++ -..+|-+ ....+.|.++||.++..+||-..
T Consensus 84 ~k-~VLfGHHFasIAGAGPivGPvlAa~~GwlP~ 116 (701)
T PRK15015 84 DK-KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPG 116 (701)
T ss_pred Cc-cchhHHHHHHHhccCccHHHHHHHHHcchHH
Confidence 44 4555554 56667899999999999999643
No 313
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=41.05 E-value=2.2e+02 Score=23.98 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=23.5
Q ss_pred CcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh--cccchHHHHHHHHHHHH
Q 013411 271 HFNKNQFADLMVIAGIAGTISQLIMMPVLAPT--VGEARLLSFGLLFGCVH 319 (443)
Q Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~ 319 (443)
|.+.........+.+.........++.++.++ .+++. ++.+.++..++
T Consensus 153 g~~~~~~~~~igivs~i~~~~G~~lG~~~~~~~~~g~~a-~igGliLI~iG 202 (206)
T TIGR02840 153 GLNPLATSILVAVMSFIFVSLGLFLGKKISKKSIIGKFS-FLSGILLILLG 202 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchH-HHHHHHHHHHH
Confidence 55555544444444444444443454344444 35554 55555555444
No 314
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=40.72 E-value=1.3e+02 Score=23.86 Aligned_cols=35 Identities=11% Similarity=-0.001 Sum_probs=26.8
Q ss_pred hhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHH
Q 013411 345 SHPCLRTIVSKQVASNEQGKAQGCISGICSFANLV 379 (443)
Q Consensus 345 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~ 379 (443)
...+.|..++..-+++..|+..|+-.+-.+.+...
T Consensus 111 llGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 111 LLGISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred HHhhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 33456777788888899999999998888876543
No 315
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=40.40 E-value=33 Score=24.98 Aligned_cols=50 Identities=20% Similarity=0.136 Sum_probs=39.8
Q ss_pred HHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhcc
Q 013411 50 SGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSR 99 (443)
Q Consensus 50 ~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~ 99 (443)
.|=+.++|.-.+.+.++.+++..|+.-+-+-=.++..+..++..+..+.|
T Consensus 56 fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 56 FGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred chhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 57788888889999999999999998877766777777777766655544
No 316
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=34.46 E-value=4.5e+02 Score=25.68 Aligned_cols=124 Identities=12% Similarity=0.055 Sum_probs=73.7
Q ss_pred HHHHcC---cChhhHHHHHHHHHH-HHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhc---------c----
Q 013411 266 LKAKFH---FNKNQFADLMVIAGI-AGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW---------S---- 328 (443)
Q Consensus 266 ~~~~~g---~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---- 328 (443)
++|.+. .+++...++-...-. ++++...+. .++.++..+.++...-.......++++++.- +
T Consensus 49 lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy-~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~ 127 (509)
T COG3202 49 LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIY-QKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFS 127 (509)
T ss_pred hhhheEeecCcchhhHHHHHHHhchHHHHHHHHH-HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHH
Confidence 445443 345555555444433 334444344 5788888888877665555555554444321 0
Q ss_pred -------h------------hHHHHHHHHH-Hhhhhhh-hHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHH
Q 013411 329 -------S------------WVPYAAAVFS-ILSVFSH-PCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL 387 (443)
Q Consensus 329 -------~------------~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 387 (443)
+ |......++. +-..... -..+..+.|....++..+.+++.+...+++..++..+..++
T Consensus 128 ~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 128 RDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred HHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111221 1112222 35677889999999999999999999999998888888887
Q ss_pred HHh
Q 013411 388 TAL 390 (443)
Q Consensus 388 ~~~ 390 (443)
.++
T Consensus 208 ~k~ 210 (509)
T COG3202 208 SKH 210 (509)
T ss_pred hhc
Confidence 764
No 317
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=34.46 E-value=2.8e+02 Score=23.29 Aligned_cols=64 Identities=11% Similarity=-0.014 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHH
Q 013411 349 LRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQS 419 (443)
Q Consensus 349 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (443)
.+.-..+..++++|-+..--......+...+....+.++.+.++- .--.+-+.+.+.+....+-
T Consensus 23 ~f~~lt~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgI-------sl~af~IaGGiiL~~ia~~ 86 (203)
T PF01914_consen 23 IFLSLTKGMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGI-------SLPAFRIAGGIILFLIALE 86 (203)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHHH
Confidence 334445555555555544444444444444455555566666532 1234555555544444333
No 318
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=34.30 E-value=96 Score=22.71 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH
Q 013411 275 NQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYS 324 (443)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (443)
...|-.++.++-..++.++ ..++..|+..+.+.=.++..++.++..++.
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl-~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASL-LWGWLVDGVRPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred ccchhHHHHhhhhHHHHHH-HHHhhhcCcCCChHHHHhHHHHHHhHHheE
Confidence 4567788888888888884 447999998877766667666666655443
No 319
>PRK02237 hypothetical protein; Provisional
Probab=34.14 E-value=58 Score=23.84 Aligned_cols=50 Identities=14% Similarity=0.025 Sum_probs=39.0
Q ss_pred HHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhcc
Q 013411 50 SGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSR 99 (443)
Q Consensus 50 ~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~ 99 (443)
.|=+.++|.-.+.+.++.+++..|+.-+-+-=.++..+..++..+..+.+
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 57788888999999999999999998776666667777777766555544
No 320
>PRK11469 hypothetical protein; Provisional
Probab=33.29 E-value=2.8e+02 Score=22.95 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=30.7
Q ss_pred CcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Q 013411 271 HFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY 323 (443)
Q Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 323 (443)
|.+.........+.+.........++.++.+++++|.-+..+.++..++.-.+
T Consensus 130 g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~il 182 (188)
T PRK11469 130 QVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQIL 182 (188)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555554555556667777777777777776665443
No 321
>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only]
Probab=32.74 E-value=3.7e+02 Score=24.24 Aligned_cols=92 Identities=9% Similarity=0.026 Sum_probs=53.2
Q ss_pred HHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHH
Q 013411 295 MMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS 374 (443)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 374 (443)
+++.+++|-|.-++-+=+..+.+....... ....+..+...+.+...+.......+..+.....++--+..+++-....
T Consensus 26 LG~l~sERsGVlNIglEG~M~~gAf~~~~~-~~~t~spw~gl~~a~l~g~l~~ll~a~~ti~l~~nqiisG~alnl~a~G 104 (304)
T COG1079 26 LGGLFSERSGVLNIGLEGIMLLGAFSGALF-AYGTGSPWLGLLAAALVGALFGLLHAFLTIKLRANQIISGLALNLLASG 104 (304)
T ss_pred HHHHHHHHhceeeechhhHHHHHHHHHHHH-HHccccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 446788998876544333333222222111 1112233444555666666677778888888877888777887766666
Q ss_pred HHHHHhHHhHHHH
Q 013411 375 FANLVSPLAFSPL 387 (443)
Q Consensus 375 ~g~~~~~~~~g~l 387 (443)
+...++....+.-
T Consensus 105 lt~fl~~~~~~~~ 117 (304)
T COG1079 105 LTAFLGQSIFGQP 117 (304)
T ss_pred HHHHHHHHHhccC
Confidence 6666665555433
No 322
>PRK02237 hypothetical protein; Provisional
Probab=30.62 E-value=1.7e+02 Score=21.52 Aligned_cols=48 Identities=17% Similarity=0.068 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH
Q 013411 276 QFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYS 324 (443)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (443)
..|-.++.++-..++.++ ..++..|+..+-+.=.++..++.++..++.
T Consensus 57 ~~GRvYAAYGGvyI~~Sl-~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 57 AFGRVYAAYGGVYVAGSL-LWLWVVDGVRPDRWDWIGAAICLVGMAVIM 104 (109)
T ss_pred hhhhHHHHhhhHHHHHHH-HHHHHhcCcCCChhHHHhHHHHHHhHHHhe
Confidence 467888888888888884 447999998877666667666666655443
No 323
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=30.61 E-value=2.5e+02 Score=22.78 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=10.3
Q ss_pred CCchhHHHhhhccChhh
Q 013411 225 LPSIDDMVHLLKSSPTF 241 (443)
Q Consensus 225 ~~~~~~~~~~~~~~~~~ 241 (443)
..+|-+.+++-++++++
T Consensus 24 ~L~W~~ffkLRk~rrr~ 40 (173)
T PF08566_consen 24 QLTWNEFFKLRKSRRRI 40 (173)
T ss_pred CCCHHHHHHHHHHhhHH
Confidence 45777777766554443
No 324
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=29.84 E-value=4.1e+02 Score=23.77 Aligned_cols=56 Identities=13% Similarity=0.008 Sum_probs=34.9
Q ss_pred HHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh
Q 013411 107 YYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI 164 (443)
Q Consensus 107 l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~ 164 (443)
.-..|.+.|+ -. ..+...++++.-.+|++++-...--...+.+++.++-|++|-.+
T Consensus 22 ~~~lr~~~g~-~~-vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l 77 (287)
T PF07760_consen 22 IPPLRVILGF-PF-VLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLL 77 (287)
T ss_pred hhHHHHHHHH-HH-HHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888887 43 33456889999999966554433334444445555666666554
No 325
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=27.59 E-value=98 Score=22.72 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=22.6
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHhccCCCC
Q 013411 164 ISTSAAFQAATAGSIISAVYMRIFLPESVR 193 (443)
Q Consensus 164 ~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~ 193 (443)
-+|+.+|++...++++.+.+.+.+.||+..
T Consensus 57 e~we~~~f~~~~~~~v~~~~~~~y~PD~~i 86 (105)
T PF10183_consen 57 EGWELPFFFGFSGSLVFGGVFLAYKPDTSI 86 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 378999988877777777767677787654
No 326
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=27.31 E-value=93 Score=25.57 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=14.4
Q ss_pred HhHHHHHhhhccccccccccc
Q 013411 57 IGLGTLVMMPLVGNLSDKYGR 77 (443)
Q Consensus 57 ~~~~~~~~~~~~G~l~Dr~Gr 77 (443)
|-+++.+.+.+.|++.||..+
T Consensus 91 yL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 91 YLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 456667777777777777764
No 327
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.21 E-value=2.4e+02 Score=20.51 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=18.7
Q ss_pred HHHHHhhhcccccccc-cccchhhHHHHHHhHHH
Q 013411 59 LGTLVMMPLVGNLSDK-YGRKALLTVPITLSIIP 91 (443)
Q Consensus 59 ~~~~~~~~~~G~l~Dr-~Grr~~~~~~~~~~~i~ 91 (443)
+...+...+.|.+.|+ +|-++.+.+..++.++.
T Consensus 53 v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~ 86 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVV 86 (100)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 3344555667777775 67666555555444443
No 328
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=27.01 E-value=3.2e+02 Score=24.32 Aligned_cols=102 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred hhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhh
Q 013411 80 LLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTI 159 (443)
Q Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 159 (443)
.++.+.+.+++++++..+.... .|.+.+.-++.++ +.++... -..|+...|.......+=.+.++.
T Consensus 1 ~L~~~~~~~~~~s~~~~l~~~~--~~l~~~~~~~~~F-~~~ml~~-----------~G~r~~~i~~~~Ll~~v~t~~~~~ 66 (284)
T PF12805_consen 1 MLIATLLCFALASLLVGLLFPY--PWLLILVLALLTF-FFGMLGV-----------YGPRAATIGFATLLVAVYTMAGPS 66 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHH-HHHHHHH-----------HhhHHHHHHHHHHHHHHHHHhCCC
Q ss_pred hhh-hhchhhHHHHHHHHHHHHHHHHHHhccCCCCcc
Q 013411 160 SAR-FISTSAAFQAATAGSIISAVYMRIFLPESVRDE 195 (443)
Q Consensus 160 l~~-~~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~ 195 (443)
-+. .+.--..+.+.++...+..++.+.+.|..|.++
T Consensus 67 ~~~~~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rq 103 (284)
T PF12805_consen 67 PGPEALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQ 103 (284)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
No 329
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=26.94 E-value=3.4e+02 Score=28.00 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=29.5
Q ss_pred cccccccc----cccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhh
Q 013411 67 LVGNLSDK----YGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAM 116 (443)
Q Consensus 67 ~~G~l~Dr----~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~ 116 (443)
+.+-++|. -||.+-++++.+++.++++...+...+ .|.+...-++.++
T Consensus 42 ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~--p~lf~~~l~~~tf 93 (704)
T TIGR01666 42 IAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGK--PWLFAVGLTVSTF 93 (704)
T ss_pred HhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 34556663 356677778888888887777665542 4555555555554
No 330
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=26.21 E-value=5.4e+02 Score=24.02 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=27.8
Q ss_pred hcCCCCCcchhHHHHH-HHHhhhhhhhhhhhhhhhchhhHH
Q 013411 131 ADNVPPGRRASVFGIF-SGIVSGAFVCGTISARFISTSAAF 170 (443)
Q Consensus 131 ~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~l~~~~~w~~~f 170 (443)
.|..| .+|-..++.+ ....+.|.++||.++..+||-..+
T Consensus 47 vDYvP-~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~ 86 (376)
T PF02554_consen 47 VDYVP-TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPAL 86 (376)
T ss_pred CCCCC-CchHHhhHHHHHHHhccccchHHHHHHHhcchHHH
Confidence 35555 4556667765 556678999999999999997443
No 331
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=25.73 E-value=3.4e+02 Score=28.04 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=30.2
Q ss_pred ccccccccc----ccchhhHHHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhh
Q 013411 67 LVGNLSDKY----GRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAM 116 (443)
Q Consensus 67 ~~G~l~Dr~----Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~ 116 (443)
+.+-++|.= ||.+-++++.+++.++++...+...+ .|.+...-++.++
T Consensus 42 ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~--p~~~~~~l~~~tf 93 (701)
T TIGR01667 42 IAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPK--PWLFPFLLTLLTF 93 (701)
T ss_pred HhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHH
Confidence 445566643 56677888888888888877766552 3445555445554
No 332
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=24.74 E-value=4.5e+02 Score=22.52 Aligned_cols=45 Identities=16% Similarity=0.063 Sum_probs=29.4
Q ss_pred CcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc---cchHHHHHHHHH
Q 013411 271 HFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVG---EARLLSFGLLFG 316 (443)
Q Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~ 316 (443)
.-|+.+-+..+...+++..+.-+.. |..++++. ||+....+..+.
T Consensus 160 tgS~~~Gal~mlaFGlGTlP~ll~~-G~~s~~~s~~~r~~~~rl~~gl~ 207 (232)
T COG2836 160 TGSAFEGALVMLAFGLGTLPNLLAM-GIFSSKLSKSSRKRLNRLSGGLM 207 (232)
T ss_pred cCCHHHHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHHHHHHHHHhHHH
Confidence 4466777777888888888877444 67777653 555555554443
No 333
>COG2119 Predicted membrane protein [Function unknown]
Probab=24.66 E-value=4e+02 Score=21.96 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 013411 283 IAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM 320 (443)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 320 (443)
...+++.++- ..+.++++|+..|.+...+.++..+..
T Consensus 142 g~~l~s~laV-l~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 142 GMILASVLAV-LLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred HHHHHHHHHH-HHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 3444555555 566788999999888777666554443
No 334
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=24.63 E-value=5.3e+02 Score=23.31 Aligned_cols=50 Identities=4% Similarity=-0.002 Sum_probs=28.8
Q ss_pred ccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhhchhhHH
Q 013411 118 CEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAF 170 (443)
Q Consensus 118 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~w~~~f 170 (443)
+.....|....+..+=.| .+.+++..-+...+....-......+||+...
T Consensus 65 C~c~~~P~~~~l~~~Ga~---~~~~~aFl~a~p~~n~~~~~~~~~~lg~~~~~ 114 (307)
T PF03773_consen 65 CSCGAVPVARGLLRKGAP---LGAAMAFLLASPLLNPIVLLLTWAALGWKFTL 114 (307)
T ss_pred CcccHHHHHHHHHHCCCC---cchhHHHHHhhHHhhHHHHHHHHHHhCcHHHH
Confidence 344445666666665443 44566666665555555555555667887654
No 335
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=24.04 E-value=1.3e+02 Score=16.07 Aligned_cols=13 Identities=31% Similarity=0.669 Sum_probs=5.2
Q ss_pred HHHHHHhccCCCC
Q 013411 181 AVYMRIFLPESVR 193 (443)
Q Consensus 181 ~~~~~~~~~e~~~ 193 (443)
.+....+.+|+|+
T Consensus 16 ilffAI~FRePPr 28 (29)
T PF01405_consen 16 ILFFAIFFREPPR 28 (29)
T ss_dssp HHHHHHHSS----
T ss_pred HHHhhhhccCCCC
Confidence 3444467788775
No 336
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=24.02 E-value=2.7e+02 Score=19.69 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=11.0
Q ss_pred ChhhHHHHHHHHHHHHHHHH
Q 013411 273 NKNQFADLMVIAGIAGTISQ 292 (443)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~ 292 (443)
.....|......+++.++.+
T Consensus 60 pi~~lG~WN~~IGfg~~~~G 79 (87)
T PF06781_consen 60 PIPDLGNWNLAIGFGLMIVG 79 (87)
T ss_pred CcccccchHHHHHHHHHHHH
Confidence 33444555556666666655
No 337
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=23.61 E-value=3.6e+02 Score=21.45 Aligned_cols=9 Identities=11% Similarity=0.202 Sum_probs=5.2
Q ss_pred HHhhhhccc
Q 013411 297 PVLAPTVGE 305 (443)
Q Consensus 297 ~~l~~~~~~ 305 (443)
|.++..+..
T Consensus 117 GilSaSWD~ 125 (153)
T PF11947_consen 117 GILSASWDP 125 (153)
T ss_pred hhcccccCC
Confidence 566665543
No 338
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=22.86 E-value=7e+02 Score=24.10 Aligned_cols=123 Identities=11% Similarity=0.063 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Q 013411 244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY 323 (443)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 323 (443)
..+..+-+.++.++-....|...-...+.+.++..++.+..-+.+-++.++-. ....+.|-|-....+.-...++-...
T Consensus 18 ~~~lglQH~lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~-~~~~~~g~~lP~~lG~sFafi~p~i~ 96 (451)
T COG2233 18 LLLLGLQHLLAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQL-LGTGPGGSGLPSYLGSSFAFVAPMIA 96 (451)
T ss_pred HHHHHHHHHHHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hhccCcccCCCeeEechHHHHHHHHH
Confidence 44444445555566666778888788899999988888877777777773331 21222443433333333333332222
Q ss_pred Hhhc-c--hhHHHHHHHH-HHhhhhhhhHHHHHHHhcCCCCcchhHHh
Q 013411 324 SVAW-S--SWVPYAAAVF-SILSVFSHPCLRTIVSKQVASNEQGKAQG 367 (443)
Q Consensus 324 ~~~~-~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~g~~~g 367 (443)
.... . .......++. ++......+.....+.+.+||-..|...-
T Consensus 97 ~~~~~g~~~~~~~G~ii~ag~~~~li~~~~~~~l~rlfPPvVtG~Vi~ 144 (451)
T COG2233 97 IGGTTGDGIAALLGGIIAAGLVYFLISPIVKIRLARLFPPVVTGPVVL 144 (451)
T ss_pred HHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeEee
Confidence 2222 1 2222222222 33333333222228889999887776543
No 339
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=22.35 E-value=6.7e+02 Score=23.73 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=26.1
Q ss_pred CCCcchhHHHHHHHHhhhhhhhhhhhhhhhchhh
Q 013411 135 PPGRRASVFGIFSGIVSGAFVCGTISARFISTSA 168 (443)
Q Consensus 135 ~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~w~~ 168 (443)
.+++.+..+.+.+...+.|.+.-|..++.-||..
T Consensus 2 ~~~d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~ 35 (397)
T TIGR00814 2 TKTDTGWMLGLYGTAIGAGVLFLPIQAGLGGLWV 35 (397)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 3567788889999999999988888766555543
No 340
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=20.98 E-value=1.6e+02 Score=15.95 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=8.2
Q ss_pred HHHHHhccCCCCc
Q 013411 182 VYMRIFLPESVRD 194 (443)
Q Consensus 182 ~~~~~~~~e~~~~ 194 (443)
+....+.+|+|+-
T Consensus 17 iFFAIfFRepPri 29 (31)
T PRK11875 17 LFFAIAFRDPPKI 29 (31)
T ss_pred HHHhhhccCCCCC
Confidence 3444677887764
No 341
>PRK11017 codB cytosine permease; Provisional
Probab=20.88 E-value=7.2e+02 Score=23.53 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=23.8
Q ss_pred cCCCCCcchhHHHHHHHHhh-----hhhhhhhhhhhhhchhhHHHHHHHHHHH
Q 013411 132 DNVPPGRRASVFGIFSGIVS-----GAFVCGTISARFISTSAAFQAATAGSII 179 (443)
Q Consensus 132 ~~~~~~~r~~~~~~~~~~~~-----~g~~~g~~l~~~~~w~~~f~~~~~~~~~ 179 (443)
|-.|++||...........+ .....|..++.-++++.......+-.++
T Consensus 2 ~pvp~~~r~~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i 54 (404)
T PRK11017 2 SPVPQSARKGVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLL 54 (404)
T ss_pred CCCCHHHhcchHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45677777644443222222 2233344555556777666554444443
No 342
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.27 E-value=57 Score=25.03 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCcc
Q 013411 167 SAAFQAATAGSIISAVYMRIFLPESVRDE 195 (443)
Q Consensus 167 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~ 195 (443)
||++++..++.+++++++........+++
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhhc
No 343
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=20.09 E-value=3.7e+02 Score=19.83 Aligned_cols=36 Identities=8% Similarity=-0.006 Sum_probs=25.2
Q ss_pred hccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Q 013411 235 LKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKF 270 (443)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (443)
+++.+.+.+......++.+++.....+.++++.+.+
T Consensus 45 l~~~~Fi~Rt~~FIlicAFGYGll~v~~tP~l~~~L 80 (106)
T PF11872_consen 45 LSGYHFILRTLAFILICAFGYGLLIVWLTPLLARQL 80 (106)
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666677777777788888888888887654
Done!