Query 013411
Match_columns 443
No_of_seqs 476 out of 1288
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 10:05:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 2.1E-40 7.2E-45 316.7 27.4 386 8-422 31-433 (451)
2 4gc0_A D-xylose-proton symport 100.0 4.6E-39 1.6E-43 310.8 30.6 407 14-436 21-471 (491)
3 3o7q_A L-fucose-proton symport 100.0 2.3E-38 7.9E-43 301.4 34.1 345 9-392 30-409 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 5.7E-35 1.9E-39 282.1 28.6 400 4-423 12-472 (491)
5 2gfp_A EMRD, multidrug resista 100.0 5.1E-36 1.7E-40 279.2 12.6 341 8-391 3-353 (375)
6 2cfq_A Lactose permease; trans 100.0 2.7E-33 9.3E-38 264.2 16.8 382 3-423 5-400 (417)
7 2xut_A Proton/peptide symporte 100.0 7.9E-30 2.7E-34 248.1 19.8 380 4-390 11-467 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.6 6.2E-14 2.1E-18 134.8 22.8 176 238-422 12-196 (491)
9 3o7q_A L-fucose-proton symport 99.6 9.5E-14 3.2E-18 131.4 20.2 145 243-389 30-178 (438)
10 1pw4_A Glycerol-3-phosphate tr 99.6 1.7E-13 5.8E-18 130.2 20.2 174 239-422 28-206 (451)
11 2xut_A Proton/peptide symporte 99.5 7.2E-13 2.5E-17 128.5 20.4 174 238-420 11-196 (524)
12 2gfp_A EMRD, multidrug resista 99.5 9.4E-13 3.2E-17 121.9 15.2 164 244-417 5-169 (375)
13 2cfq_A Lactose permease; trans 99.5 2.9E-13 9.8E-18 127.2 11.3 157 27-191 242-403 (417)
14 4gc0_A D-xylose-proton symport 99.3 6E-11 2E-15 113.9 15.6 144 49-194 313-469 (491)
15 2g9p_A Antimicrobial peptide l 45.1 2.6 8.8E-05 19.8 -0.8 13 68-80 3-15 (26)
16 4aw6_A CAAX prenyl protease 1 25.8 4E+02 0.014 24.7 11.9 61 263-324 146-213 (482)
17 1cmk_I CAMP-dependent protein 25.3 16 0.00054 18.1 0.1 10 72-81 9-18 (26)
18 3arc_T Photosystem II reaction 21.5 1E+02 0.0034 16.2 3.6 15 181-195 16-30 (32)
19 2jln_A MHP1; hydantoin, transp 20.9 5.1E+02 0.017 24.1 20.1 49 133-181 19-73 (501)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.1e-40 Score=316.66 Aligned_cols=386 Identities=13% Similarity=0.069 Sum_probs=301.0
Q ss_pred hhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHH
Q 013411 8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL 87 (443)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~ 87 (443)
..+++..++..++.....+.+|.+. +++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 31 LGIFFGYAAYYLVRKNFALAMPYLV--------EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHTT--------SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 3445666677777778888888773 445 6777899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHh----ccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh
Q 013411 88 SIIPLAILAY----SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF 163 (443)
Q Consensus 88 ~~i~~~~~~~----~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~ 163 (443)
.+++.+++++ +++ ++.++++|+++|+ +.+...+...+++.|++|+++|++++++.+.+..+|.++||.+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSS---IAVMFVLLFLCGW-FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHCHHHHSS---SSHHHHHHHHHHH-HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHhhhhcccc---HHHHHHHHHHHHH-HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 888 9999999999999 9899999999999999999999999999999999999999998876
Q ss_pred h----c-hhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHH-Hhhhcc
Q 013411 164 I----S-TSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDM-VHLLKS 237 (443)
Q Consensus 164 ~----~-w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 237 (443)
+ + ||+.|++.+++.++..++.++.+||+|++.+..+..+..++ .+++.+ ++++++.+.++. .+...+
T Consensus 178 l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~ 250 (451)
T 1pw4_A 178 GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND----YPDDYN---EKAEQELTAKQIFMQYVLP 250 (451)
T ss_dssp HHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------------CCTHHHHHHTSS
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccc----ccccch---hhhhcccccccchHHHHHc
Confidence 3 7 99999999998888777777888988765432111000000 000000 011111222222 223447
Q ss_pred ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccchHHHHHHHH
Q 013411 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV--GEARLLSFGLLF 315 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~ 315 (443)
+|.++...+..++..........+.|.|+++.+|+++.+.+...+..+++.+++.++. +++.||+ ++|+.+..+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLC-GWMSDKVFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCchhHHHHHHH
Confidence 7888888888888888888899999999999889999999999999999999999554 7999999 999888877766
Q ss_pred HH-HHHHHHHhhc--chhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHH-HHHHhHHhHHHHHHh
Q 013411 316 GC-VHMFLYSVAW--SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSF-ANLVSPLAFSPLTAL 390 (443)
Q Consensus 316 ~~-~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~ 390 (443)
.. ++.+++...+ +.+.... ..+.+++.+...+...++..|.+|+++||++.|+.+...++ |..++|.+.|.+.+.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 330 LVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409 (451)
T ss_dssp HHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66 5665555543 3333333 45567777778888899999999999999999999999999 999999999999997
Q ss_pred hhcCCCCCccchhHHHHHHHHHHHHHHHHHHh
Q 013411 391 FLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (443)
.+ ....+.+.+++.+++.+..+..
T Consensus 410 ~g--------~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 410 FG--------WDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp SC--------SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC--------cHHHHHHHHHHHHHHHHHHHHH
Confidence 42 1345555666666555555443
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=4.6e-39 Score=310.78 Aligned_cols=407 Identities=15% Similarity=0.105 Sum_probs=278.9
Q ss_pred HHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHH
Q 013411 14 IFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLA 93 (443)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~ 93 (443)
.++..++.+++.+.+|.+..+...+...+.+.+..+.|++.+++.+|.++|++++|+++||+|||++++++.+++.++++
T Consensus 21 ~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i 100 (491)
T 4gc0_A 21 GLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGV 100 (491)
T ss_dssp HHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34555566777788887766643333444567778899999999999999999999999999999999999999999999
Q ss_pred HHHh------------------ccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhh
Q 013411 94 ILAY------------------SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFV 155 (443)
Q Consensus 94 ~~~~------------------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 155 (443)
++++ ++| ++.++++|+++|+ +.|...+....+++|++|+++|++..+..+.+...|.+
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G~-g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~ 176 (491)
T 4gc0_A 101 GSAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGGI-GVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL 176 (491)
T ss_dssp HHHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh
Confidence 9984 667 9999999999999 99999999999999999999999999999999999999
Q ss_pred hhhhhhhhh------------chhhHHHHHHHHHHHHHHHHHHhccCCCCccc-------cccccccchhhhhhhhhhhh
Q 013411 156 CGTISARFI------------STSAAFQAATAGSIISAVYMRIFLPESVRDED-------LYTPILSSKAEISASCEEST 216 (443)
Q Consensus 156 ~g~~l~~~~------------~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 216 (443)
+++.++... .||..+.+..+..++ .+...+++||+|++.. +++.+++...+...+++..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 255 (491)
T 4gc0_A 177 LVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL-FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQE 255 (491)
T ss_dssp HHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhccccccccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHH
Confidence 888776543 466666666665555 4445588999987421 11222222211111111111
Q ss_pred hhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHh-hhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHH
Q 013411 217 KKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNL-ADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIM 295 (443)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 295 (443)
.++..++++..... .. ..+.+.........++..+ .......+.|. +.+..+.+...........++...++. ++
T Consensus 256 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 331 (491)
T 4gc0_A 256 IKHSLDHGRKTGGR-LL-MFGVGVIVIGVMLSIFQQFVGINVVLYYAPE-VFKTLGASTDIALLQTIIVGVINLTFT-VL 331 (491)
T ss_dssp HHHHHHHHHHHTTH-HH-HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSSCCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHhhhhhhhH-HH-HhcccHHHHHHHHHHHHHHhhhhHHHhcchH-HHHhcCCCccchhhHHHHHHHHHHHHH-HH
Confidence 11111000001111 11 1233333333333333333 33344444444 444457777777777778888888888 45
Q ss_pred HHHhhhhcccchHHHHHHHHHHHHHHHHHhhc---c-hhHHHH-HHHHHHhh-hhhhhHHHHHHHhcCCCCcchhHHhHH
Q 013411 296 MPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW---S-SWVPYA-AAVFSILS-VFSHPCLRTIVSKQVASNEQGKAQGCI 369 (443)
Q Consensus 296 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~ 369 (443)
++++.||+|||+.+..+.....++.+.+.... . .+.... ..++..++ ....+..+.+.+|.+|++.|+++.|+.
T Consensus 332 ~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~ 411 (491)
T 4gc0_A 332 AIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIA 411 (491)
T ss_dssp HHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHH
T ss_pred HHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHH
Confidence 57999999999999988888887776655432 1 122222 22222232 334577889999999999999999999
Q ss_pred hHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 013411 370 SGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIRVAPPLPVSSQRVS 436 (443)
Q Consensus 370 ~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (443)
+..+++++.+++.+.+.+.+...... .......+++.+++++++.++.+++. ||||+++.
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~--~~~~~~~~~i~~~~~~~~~i~~~~~~-----PETkg~tL 471 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVA--HFHNGFSYWIYGCMGVLAALFMWKFV-----PETKGKTL 471 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHC-----CCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHHHHhee-----cCCCCCCH
Confidence 99999999999999887765421100 01123466777888888888877777 77777765
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.3e-38 Score=301.37 Aligned_cols=345 Identities=12% Similarity=0.084 Sum_probs=283.7
Q ss_pred hhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHh
Q 013411 9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLS 88 (443)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~ 88 (443)
.+.+..++..++.....+.+|.+.+ +++.+..+.|++.+++.++..++++++|+++||+|||++++.+.++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQQ--------AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 3455566666677788888888743 46788889999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhhc
Q 013411 89 IIPLAIL---AYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFIS 165 (443)
Q Consensus 89 ~i~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~ 165 (443)
+++.+++ +++++ ++.++++|+++|+ +.+...+...+++.|++|+++|++++++.+...++|.+++|.+++.+.
T Consensus 102 ~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 102 ALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHhcccccc---HHHHHHHHHHHHh-hHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 88899 9999999999999 999999999999999999999999999999999999999999887753
Q ss_pred ------------------------------hhhHHHHHHHHHHHHHHHHHH-hccCCCCccccccccccchhhhhhhhhh
Q 013411 166 ------------------------------TSAAFQAATAGSIISAVYMRI-FLPESVRDEDLYTPILSSKAEISASCEE 214 (443)
Q Consensus 166 ------------------------------w~~~f~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 214 (443)
||+.|++.+.+..+..++.++ ..||+++++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~----------------- 240 (438)
T 3o7q_A 178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS----------------- 240 (438)
T ss_dssp HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCC-----------------
T ss_pred hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc-----------------
Confidence 999998887766665444322 23443332110
Q ss_pred hhhhhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHH-HHHHcCcChhhHHHHHHHHHHHHHHHHH
Q 013411 215 STKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYY-LKAKFHFNKNQFADLMVIAGIAGTISQL 293 (443)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 293 (443)
++++ .+.++..+.+.++|.++...+..++..........+.|.| +++.+|+++.+.+...+...++.+++.
T Consensus 241 ------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 312 (438)
T 3o7q_A 241 ------DAKQ-GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGR- 312 (438)
T ss_dssp ------CSST-TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH-
T ss_pred ------cccc-cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHH-
Confidence 0001 1111112223367888888888888888888888999999 888889999999999999999999999
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHH
Q 013411 294 IMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGIC 373 (443)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 373 (443)
++.+++.||++||+.+..+.++..++.+++...++.+..+...+.+++.+..++..+++..|.+|++ ++++.++.. ..
T Consensus 313 ~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~ 390 (438)
T 3o7q_A 313 FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MT 390 (438)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HT
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HH
Confidence 4558999999999999999998888888887777666555566778888888999999999999966 888888877 77
Q ss_pred HHHHHHhHHhHHHHHHhhh
Q 013411 374 SFANLVSPLAFSPLTALFL 392 (443)
Q Consensus 374 ~~g~~~~~~~~g~l~~~~~ 392 (443)
.++..++|.+.|.+.|..+
T Consensus 391 ~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 391 IIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp THHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999975
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=5.7e-35 Score=282.12 Aligned_cols=400 Identities=12% Similarity=0.028 Sum_probs=281.7
Q ss_pred CCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccc-cccchhhH
Q 013411 4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK-YGRKALLT 82 (443)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~~~ 82 (443)
++..+.++...+...++.....+.++.+..+.. .++|++.+..+.|++.+.+.++..++++++|+++|| +|||+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~ 89 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLI--STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF 89 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 345566677777777887777778888876631 134578889999999999999999999999999999 89999999
Q ss_pred HHHHHhHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCc--chhHHHHHHHHhhhhhhhhhhh
Q 013411 83 VPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGR--RASVFGIFSGIVSGAFVCGTIS 160 (443)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~l 160 (443)
.+.++.+++.++++++++ ++.++++|+++|+ +.+...+...+++.|++|+++ |++++++.+...++|..+||.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 90 WGGVLIMLGHIVLALPFG---ASALFGSIILIII-GTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHSCCS---TTHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999 999999999999999999998 7778888999999999999998
Q ss_pred hhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCcccc--ccccccchhhhhhhh---------------------h
Q 013411 161 ARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDL--YTPILSSKAEISASC---------------------E 213 (443)
Q Consensus 161 ~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~---------------------~ 213 (443)
++.+ +||+.|++.++..++..+...+..|+..+++++ ++..++.+.+...+. +
T Consensus 166 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 245 (491)
T 4aps_A 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS 245 (491)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 8774 899999998877766555544443433221110 000000000000000 0
Q ss_pred hhhh----------------hhhhcccCCchhHHHhhhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhH
Q 013411 214 ESTK----------------KLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQF 277 (443)
Q Consensus 214 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 277 (443)
.+.. ....+++..+.++ .++........+..++....+.....++|.|.++.++.+..+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (491)
T 4aps_A 246 LPAYINLLTIVAIAIPVFYFAWMISSVKVTSTE----HLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPV 321 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHC----------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCS
T ss_pred cccchhhhhHHHHHHHHHHHHHHhhcccccHHH----HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCH
Confidence 0000 0000000000000 1122233444555555566666777788999998888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccchHHH-----HHHHHHHHHHHHHHhhc---------chhHHH-HHHHHHHhh
Q 013411 278 ADLMVIAGIAGTISQLIMMPVLAPTVGEARLLS-----FGLLFGCVHMFLYSVAW---------SSWVPY-AAAVFSILS 342 (443)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~ 342 (443)
+.......+...++..+. +++.||++||+... .+..+.++++.++.... +.+... ...+.+++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~-~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 400 (491)
T 4aps_A 322 SWFQSLNPLFIMLYTPFF-AWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGE 400 (491)
T ss_dssp GGGTTHHHHHHHHHHHHH-HHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHH-HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHH
Confidence 888888888888888555 78999999886544 66666666666555432 333333 355667888
Q ss_pred hhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHh
Q 013411 343 VFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 343 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (443)
+...+..+++..|.+|+++||++.|+.+...++|..++|.+.+.+.+.. ....+...+++.+++.+..+..
T Consensus 401 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 401 MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS---------EVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS---------TTHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999998887641 1224455555555555555444
Q ss_pred h
Q 013411 423 R 423 (443)
Q Consensus 423 ~ 423 (443)
.
T Consensus 472 ~ 472 (491)
T 4aps_A 472 S 472 (491)
T ss_dssp -
T ss_pred H
Confidence 3
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=5.1e-36 Score=279.23 Aligned_cols=341 Identities=11% Similarity=0.071 Sum_probs=276.5
Q ss_pred hhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHH
Q 013411 8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL 87 (443)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~ 87 (443)
..++...++..++..+..|.+|.+. ++++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 74 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMA--------RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI 74 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 3456777888888899999999884 34678888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhhh---
Q 013411 88 SIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--- 164 (443)
Q Consensus 88 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~--- 164 (443)
.+++.++..++++ ++.+++.|+++|+ +.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.+
T Consensus 75 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 75 FMLATLVAVTTSS---LTVLIAASAMQGM-GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 9999999999998 9999999999999 98999999999999999999999999999999999999999998875
Q ss_pred -chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHhhhccChhhHH
Q 013411 165 -STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQ 243 (443)
Q Consensus 165 -~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (443)
+||+.|++.+++.++..+...+.+||++++++++ ++.++++++.+ ++|.++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~----~~~~~~~ 203 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR-----------------------TRLLTSYKTLF----GNSGFNC 203 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC-----------------------CCTTTCSTHHH----HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc-----------------------ccHHHHHHHHh----cCcchHH
Confidence 8999999988887776665556778765543310 11112333332 5677777
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH-HHHHHH-
Q 013411 244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLF-GCVHMF- 321 (443)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~- 321 (443)
..+..++..........+.|.|+++.+|.++.+.+...+...++.+++..+. +++.||.+++ +..+... ...+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~-~~l~~r~~~~--~~~~~~~~~~~~~~~ 280 (375)
T 2gfp_A 204 YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFA-GRPNKRFSTL--MWQSVICCLLAGLLM 280 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHH-HTTTTHHHHH--HHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 8888888888888888899999998889999999999999999999999544 7999998872 2222222 222222
Q ss_pred -HHHh--hcchhHHH-HHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhh
Q 013411 322 -LYSV--AWSSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALF 391 (443)
Q Consensus 322 -~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (443)
.... ..+.+... ...+.+++.+...+...++..|.+| ++||++.|+.+...++|..++|.+.|.+.+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 281 WIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1222 12333333 3556678888889999999999998 89999999999999999999999999998763
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=100.00 E-value=2.7e-33 Score=264.15 Aligned_cols=382 Identities=14% Similarity=0.094 Sum_probs=253.4
Q ss_pred CCCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhH
Q 013411 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT 82 (443)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~ 82 (443)
++++.+.+....++...+.+...|.+|.+.++ +++.+..+.|++.+.+.++..++++++|+++||+|||++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~ 77 (417)
T 2cfq_A 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHD-------INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL 77 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHT-------TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44556667777777888888889999998765 35666778999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHH---HHhccCCchh-HHHHHHHHhhhhhccchhhhhhhhhhhcCCCC--CcchhHHHHHHHHhhhhhhh
Q 013411 83 VPITLSIIPLAI---LAYSRSRNFF-YAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP--GRRASVFGIFSGIVSGAFVC 156 (443)
Q Consensus 83 ~~~~~~~i~~~~---~~~~~~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~ 156 (443)
++..+.++.... ..+++. . ..++..+.+.|+ +.+...+.....+.++.++ ++|+...+.......+|..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~ 153 (417)
T 2cfq_A 78 WIITGMLVMFAPFFIFIFGPL---LQYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL 153 (417)
T ss_dssp HHHHHTTSCHHHHHHHTHHHH---HHTTCCHHHHGGGS-STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Confidence 988877653221 122221 1 113345666665 5555444444444444432 45677778888888899999
Q ss_pred hhhhhhhh---chhhHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhhhhhhhhhhhhhcccCCchhHHHh
Q 013411 157 GTISARFI---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVH 233 (443)
Q Consensus 157 g~~l~~~~---~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (443)
+|.+++.+ +||+.|++.++..++..+.. +..||+++++++++ + ++ ++++++.+.++..+
T Consensus 154 ~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~---~~-------~~~~~~~~~~~~~~ 215 (417)
T 2cfq_A 154 GASIVGIMFTINNQFVFWLGSGCALILAVLL-FFAKTDAPSSATVA-------N---AV-------GANHSAFSLKLALE 215 (417)
T ss_dssp HHHHHHHHHHHCSHHHHTTTTTTTTTHHHHS-CSSCCCCSCSSCSS-------S---SS-------SSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHH-HHcCcccccccccc-------c---cc-------ccccccccHHHHHH
Confidence 99888765 68999987776644433332 33343322111000 0 00 00011122333333
Q ss_pred hhccChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCc---ChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHH
Q 013411 234 LLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHF---NKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLS 310 (443)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 310 (443)
.+ ++|.++...+..+.....+.....++|.|+++.++. +....+...+...+..+++. +..+++.||++||+.+.
T Consensus 216 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~l~ 293 (417)
T 2cfq_A 216 LF-RQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIGGKNALL 293 (417)
T ss_dssp HT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHH
T ss_pred Hh-cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcHHHHHH
Confidence 34 566666655555554445555566788888776542 34456777777788888888 45589999999999998
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHH-hHHHHHHHHHhHHhHHHHH
Q 013411 311 FGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCI-SGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~g~~~~~~~~g~l~ 388 (443)
.+..+.+++.+.+...++.+.... ..+.+++.+...+....+..|.+|++.||++.+.. +....+|+.++|.+.|.+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 294 LAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 888888777666655555443333 33345555556667788999999999999999994 8888899999999999999
Q ss_pred HhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 013411 389 ALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMIR 423 (443)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (443)
+..+ ....+.+.+++.+++.+..+...
T Consensus 374 ~~~g--------~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 374 ESIG--------FQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHSH--------HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HhcC--------cHHHHHHHHHHHHHHHHHHHhhh
Confidence 8642 13355666666666665554444
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=7.9e-30 Score=248.14 Aligned_cols=380 Identities=11% Similarity=0.028 Sum_probs=239.9
Q ss_pred CCcchhhHHHHHHHHhhhcccccchhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhccccccccc-ccchhhH
Q 013411 4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-GRKALLT 82 (443)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-Grr~~~~ 82 (443)
++.++.+.+..++..++.....+.++.++.+..+++ .+++.+..+.|++.+++.++..+++++.|+++||+ |||+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLS-IPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC-CSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 456667788888888888888888888876643211 12237788899999999999999999999999999 9999999
Q ss_pred HHHHHhHHHHHHHHhcc-CCchhHHHHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHH---HHHHhhhhhhhhh
Q 013411 83 VPITLSIIPLAILAYSR-SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGI---FSGIVSGAFVCGT 158 (443)
Q Consensus 83 ~~~~~~~i~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~ 158 (443)
.+.++.+++.+++++++ + ++.+++.|++.|+ +.+...+...+++.|++|+++|+++.+. .+...++|..+||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~ 165 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEHS---VQGFYTGLFLIAL-GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFAS 165 (524)
T ss_dssp HHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHH-HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHH-hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 8 9999999999999 9899999999999999999999876666 8888999999999
Q ss_pred hhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCcccccc----cccc---chhhhhhhhhhhh---h-------
Q 013411 159 ISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYT----PILS---SKAEISASCEEST---K------- 217 (443)
Q Consensus 159 ~l~~~~----~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----~~~~---~~~~~~~~~~~~~---~------- 217 (443)
.+++.+ +||+.|++.+++.++..+...+..|+.++++++.+ ..+. ...+...+.+... +
T Consensus 166 ~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (524)
T 2xut_A 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSA 245 (524)
T ss_dssp HTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhh
Confidence 887754 89999999888766655444332232211111100 0000 0000000000000 0
Q ss_pred ---------------------hhhhcccCCchhHHHh--------hhccChhhHHHHH---HHHHHHhhhhhhHHHHHHH
Q 013411 218 ---------------------KLQVFKRLPSIDDMVH--------LLKSSPTFSQAAI---VAFLSNLADAGLQGSMMYY 265 (443)
Q Consensus 218 ---------------------~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 265 (443)
...+++.+.++++..+ ..++++....... ...+....+......++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (524)
T 2xut_A 246 AYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQ 325 (524)
T ss_dssp HHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHH
T ss_pred hhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHh
Confidence 0000000111111000 0111222221111 1112222222222333444
Q ss_pred HHHHcCcCh-hhHHHHHHHHHHHHHHHHHHHHHHhh----hhccc----chHHHHHHHHHHHHHHHHHhhc---------
Q 013411 266 LKAKFHFNK-NQFADLMVIAGIAGTISQLIMMPVLA----PTVGE----ARLLSFGLLFGCVHMFLYSVAW--------- 327 (443)
Q Consensus 266 ~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~--------- 327 (443)
..+ .+.+. ...+.+.....+..++...+. +++. ||.++ ++.+..+..+.+++++++....
T Consensus 326 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 403 (524)
T 2xut_A 326 AND-MVKPQWFEPAMMQALNPLLVMLLIPFN-NFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSAL 403 (524)
T ss_dssp HHH-SCCCSSSCHHHHHTTSGGGHHHHGGGT-TTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCC
T ss_pred HHh-cCCCeeecHHHHHHHHHHHHHHhHHHH-HhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 333 23322 134555444444444444233 3332 34332 2456667777777766665532
Q ss_pred chhHHH-HHHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHh
Q 013411 328 SSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTAL 390 (443)
Q Consensus 328 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (443)
+.+... ..++.+++.+...+..+++..|.+|+++||+++|+.+...++|+.++|.+.|.+.+.
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333333 356668888888999999999999999999999999999999999999999998874
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.62 E-value=6.2e-14 Score=134.80 Aligned_cols=176 Identities=11% Similarity=0.160 Sum_probs=145.5
Q ss_pred ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-----cCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-cccchHHHH
Q 013411 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAK-----FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT-VGEARLLSF 311 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 311 (443)
++.++......++..+.++....+++.|+++. +|.++.+.++..+...++..++.++. |+++|| +|||+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-g~l~dr~~g~r~~~~~ 90 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIG-GFVADRIIGARPAVFW 90 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTSCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHhccccchHHHHH
Confidence 45566677777888888888888999999988 99999999999999999999999554 899999 899999999
Q ss_pred HHHHHHHHHHHHHhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCc--chhHHhHHhHHHHHHHHHhHHhHHHHH
Q 013411 312 GLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNE--QGKAQGCISGICSFANLVSPLAFSPLT 388 (443)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (443)
+.++..++.++....++.+.... .++.|++.+...+...+++.|.+|+++ |+++.+..+....+|..++|.+.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 170 (491)
T 4aps_A 91 GGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ 170 (491)
T ss_dssp HHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888887776665 566788899999999999999999988 778888899999999999999999998
Q ss_pred HhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHh
Q 013411 389 ALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (443)
+..+ + ...+.+.++..+++.+.....
T Consensus 171 ~~~g-------~-~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 171 EAAG-------Y-HVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHSC-------H-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhh-------H-HHHHHHHHHHHHHHHHHHHHh
Confidence 8632 1 334555555555555544433
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.58 E-value=9.5e-14 Score=131.44 Aligned_cols=145 Identities=10% Similarity=-0.027 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 013411 243 QAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFL 322 (443)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 322 (443)
......+...+.........|. +++.+|.+..+.+++.+...++..++.++. |++.||+|||+.+..+.++.+++.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~-G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPA-GILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHH-HHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhH-HHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3344445555555555555565 455679999999999999999999999555 79999999999999999999999888
Q ss_pred H---HhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHH
Q 013411 323 Y---SVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTA 389 (443)
Q Consensus 323 ~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 389 (443)
. ...++.+..+. .++.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+
T Consensus 108 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 108 FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 66677766655 5667899999999999999999999999999999999999999999999999983
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.57 E-value=1.7e-13 Score=130.21 Aligned_cols=174 Identities=14% Similarity=0.118 Sum_probs=135.8
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH
Q 013411 239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV 318 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 318 (443)
+.+....+..+.............|.+.++ + .++.+.+++.+...++..++.++. |+++||+|||+.+..+.++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~-G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIM-GSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHH-HHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhH-HHHHHhcCchHHHHHHHHHHHH
Confidence 334445555555555555666667766655 5 899999999999999999999555 7999999999999999999999
Q ss_pred HHHHHHh----hcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhc
Q 013411 319 HMFLYSV----AWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLS 393 (443)
Q Consensus 319 ~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 393 (443)
+.++..+ .++.+..++ .++.|++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..++
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 184 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 184 (451)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998888 777766665 56678889999999999999999999999999999999999999999999998876431
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHh
Q 013411 394 DRAPFNFPGFSIMCIGFVSMTAFIQSIMI 422 (443)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (443)
. ...+++.+++.++..+..+..
T Consensus 185 w-------~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 185 W-------HAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp S-------TTCTHHHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHHHHHHHHhh
Confidence 2 223455555555444444333
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.52 E-value=7.2e-13 Score=128.46 Aligned_cols=174 Identities=13% Similarity=0.078 Sum_probs=140.3
Q ss_pred ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHcC------cChhhHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccchHHH
Q 013411 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFH------FNKNQFADLMVIAGIAGTISQLIMMPVLAPTV-GEARLLS 310 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 310 (443)
++.++...+..++..+.+++...+++.|+++.+| +++.+.+++.+...++..++.+ .+|+++||+ |||+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPL-LGGWIADRFFGKYNTIL 89 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHH-HHHHHHTTSSCSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHHHH
Confidence 3456667777788888888888899999998889 9999999999999999999995 448999999 9999999
Q ss_pred HHHHHHHHHHHHHHhhc-chhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhH---HhHHHHHHHHHhHHhHH
Q 013411 311 FGLLFGCVHMFLYSVAW-SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGC---ISGICSFANLVSPLAFS 385 (443)
Q Consensus 311 ~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~---~~~~~~~g~~~~~~~~g 385 (443)
.+.++..++.++....+ +.+..+. .++.|++.+...+...+++.|.+|+++|+++.+. .+...++|..++|.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~ 169 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP 169 (524)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877 6665554 5666888899999999999999999999876666 88889999999999999
Q ss_pred HHHHhhhcCCCCCccchhHHHHHHHHHHHHHHHHH
Q 013411 386 PLTALFLSDRAPFNFPGFSIMCIGFVSMTAFIQSI 420 (443)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (443)
.+.+..+ ....+.+.+++.+++.+...
T Consensus 170 ~l~~~~g--------~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 170 LLLKNFG--------AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHTSC--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccc--------HHHHHHHHHHHHHHHHHHHH
Confidence 9987631 13345555555555444433
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.46 E-value=9.4e-13 Score=121.88 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=131.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Q 013411 244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY 323 (443)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 323 (443)
.....++...........+|.+. +.+|.++.+.+...+...++..++.++. |++.||+|||+.+..+..+..++.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~-g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFY-GPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTH-HHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 34445555555555666666654 4579999999999999999999999555 799999999999999999999999888
Q ss_pred HhhcchhHHHH-HHHHHHhhhhhhhHHHHHHHhcCCCCcchhHHhHHhHHHHHHHHHhHHhHHHHHHhhhcCCCCCccch
Q 013411 324 SVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTALFLSDRAPFNFPG 402 (443)
Q Consensus 324 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 402 (443)
...++.+.... ..+.|++.+...+...+++.|.+|+++|+++++..+....+|..++|.+.+.+.+..+ ..
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--------~~ 154 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN--------WR 154 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH--------HH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc--------HH
Confidence 88877766655 5666888888999999999999999999999999999999999999999999987642 12
Q ss_pred hHHHHHHHHHHHHHH
Q 013411 403 FSIMCIGFVSMTAFI 417 (443)
Q Consensus 403 ~~~~~~~~~~~~~~~ 417 (443)
..+.+.++..++..+
T Consensus 155 ~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555544444
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.45 E-value=2.9e-13 Score=127.23 Aligned_cols=157 Identities=12% Similarity=0.086 Sum_probs=123.5
Q ss_pred chhHHHHhhcCCCCcchhhhHHHHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhccCCchhHH
Q 013411 27 AITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYA 106 (443)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 106 (443)
.+|.+..+.. ++.+.+....|+..+...++..++.++.|+++||+|||+++..+..+.+++.+..++.++ .+.
T Consensus 242 ~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~---~~~ 314 (417)
T 2cfq_A 242 QFANFFTSFF----ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS---ALE 314 (417)
T ss_dssp HHHHHHHHTS----SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS---HHH
T ss_pred HHHHHHHHHH----hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc---HHH
Confidence 3566665532 112344556788888889999999999999999999999999988888888777777777 778
Q ss_pred HHHHHHhhhhhccchhhhhhhhhhhcCCCCCcchhHHHH-HHHHhhhhhhhhhhhhhhh----chhhHHHHHHHHHHHHH
Q 013411 107 YYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGI-FSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISA 181 (443)
Q Consensus 107 l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~~~~ 181 (443)
+++..++.++ +.+...+....++.|.+|++.|+++.+. .+....+|..++|.+++.+ +++..|.+.+++.++..
T Consensus 315 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~ 393 (417)
T 2cfq_A 315 VVILKTLHMF-EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT 393 (417)
T ss_dssp HHHHTTHHHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 8888888887 6666667778899999999999999998 4778889999999888764 66778888888777766
Q ss_pred HHHHHhccCC
Q 013411 182 VYMRIFLPES 191 (443)
Q Consensus 182 ~~~~~~~~e~ 191 (443)
+..++..||+
T Consensus 394 ~~~~~~~~~~ 403 (417)
T 2cfq_A 394 LISVFTLSGP 403 (417)
T ss_dssp HHHTTSSCCS
T ss_pred HHHHhhhcCC
Confidence 6555556653
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.27 E-value=6e-11 Score=113.91 Aligned_cols=144 Identities=18% Similarity=0.158 Sum_probs=103.8
Q ss_pred HHHHHHHHHhHHHHHhhhcccccccccccchhhHHHHHHhHHHHHHHHhc--cCCchhHHHHH-HHHhhhhhccchhhhh
Q 013411 49 LSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYS--RSRNFFYAYYV-LRTLTAMVCEGSIHCL 125 (443)
Q Consensus 49 ~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~l~~-~r~l~G~~~~~~~~~~ 125 (443)
..........+...++.++.+++.||+|||+.++.+.....++.+..+.. ........++. .-+..++ + ....|.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 390 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF-A-MSWGPV 390 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-H-TTTTHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-H-hHHHHH
Confidence 34555666778888899999999999999999999888887776655432 22111222222 2222222 2 334467
Q ss_pred hhhhhhcCCCCCcchhHHHHHHHHhhhhhhhhhhhhhh----------hchhhHHHHHHHHHHHHHHHHHHhccCCCCc
Q 013411 126 SLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF----------ISTSAAFQAATAGSIISAVYMRIFLPESVRD 194 (443)
Q Consensus 126 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----------~~w~~~f~~~~~~~~~~~~~~~~~~~e~~~~ 194 (443)
...+.+|.+|.+.|++++++......+|..+++.+... .++...|++.+.++++..++.++++||++.+
T Consensus 391 ~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 391 CWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 78999999999999999999998888888777655432 2456678888888888888888999998664
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=45.11 E-value=2.6 Score=19.84 Aligned_cols=13 Identities=54% Similarity=0.979 Sum_probs=10.1
Q ss_pred ccccccccccchh
Q 013411 68 VGNLSDKYGRKAL 80 (443)
Q Consensus 68 ~G~l~Dr~Grr~~ 80 (443)
.|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5778889999864
No 16
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=25.77 E-value=4e+02 Score=24.68 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=32.1
Q ss_pred HHHHHHHcCcChhhHHHHHH-------HHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH
Q 013411 263 MYYLKAKFHFNKNQFADLMV-------IAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYS 324 (443)
Q Consensus 263 ~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (443)
...+++++|++....+.... +..+...+....+ -++.++.|+.+.+....+..++..++..
T Consensus 146 tfvle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~-~~ii~~~g~~~wl~~w~~~~~~~l~~~~ 213 (482)
T 4aw6_A 146 TFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLL-LYIIKIGGDYFFIYAWLFTLVVSLVLVT 213 (482)
T ss_dssp HHTHHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCSSHHHHHHHHHHHHHHHHHH
T ss_pred heeehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 44567889998866554321 1112222111122 2577888888776655555554444433
No 17
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=25.30 E-value=16 Score=18.05 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=7.4
Q ss_pred ccccccchhh
Q 013411 72 SDKYGRKALL 81 (443)
Q Consensus 72 ~Dr~Grr~~~ 81 (443)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 5788888754
No 18
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=21.54 E-value=1e+02 Score=16.18 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=9.7
Q ss_pred HHHHHHhccCCCCcc
Q 013411 181 AVYMRIFLPESVRDE 195 (443)
Q Consensus 181 ~~~~~~~~~e~~~~~ 195 (443)
.+....+.+|+|+-.
T Consensus 16 iiFFAI~FRePPri~ 30 (32)
T 3arc_T 16 LFFFAIFFREPPRIT 30 (32)
T ss_dssp HHHHHHHTSCCCCCC
T ss_pred HHHHhhhhcCCCCCC
Confidence 334457788888754
No 19
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=20.92 E-value=5.1e+02 Score=24.06 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=22.1
Q ss_pred CCCCCcc-hhHHHHHH----HHhhhhhh-hhhhhhhhhchhhHHHHHHHHHHHHH
Q 013411 133 NVPPGRR-ASVFGIFS----GIVSGAFV-CGTISARFISTSAAFQAATAGSIISA 181 (443)
Q Consensus 133 ~~~~~~r-~~~~~~~~----~~~~~g~~-~g~~l~~~~~w~~~f~~~~~~~~~~~ 181 (443)
-.|+++| .....+.. ...+++.. +|..+..-+++++.+....+-.++..
T Consensus 19 pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~ 73 (501)
T 2jln_A 19 PTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAV 73 (501)
T ss_dssp CCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHH
Confidence 4566666 33434332 22233322 33333334567766655544444433
Done!