BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013413
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 383 AP--GKKISVLYTGKLKENGQVFDSNL-GSTPLKFHLGGKEVIEGLNV 427
AP G +++V Y GKL+ +G+VFDS+ + P KFHLG EVI+G ++
Sbjct: 32 APKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDI 79
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 381 VAAPGKKISVLYTGKLKENGQVFDSNL-GSTPLKFHLGGKEVIEGLNV 427
+ G +++V Y GKL+ G+VFDS+ + P KFHL EVI+G ++
Sbjct: 33 IPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDI 80
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 381 VAAPGKKISVLYTGKLKENGQVFDSNL-GSTPLKFHLGGKEVIEGLNV 427
+ G +++V Y GKL+ G+VFDS+ + P KFHL EVI+G ++
Sbjct: 33 IPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDI 80
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 349 ENSSAEGKLSLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLG 408
E +S E +S P+GL G G A G+ I Y GKL ENG+VFDS+
Sbjct: 1 ETTSCEFSVS-----PSGLAFCDKVVGY--GPEAVKGQLIKAHYVGKL-ENGKVFDSSYN 52
Query: 409 -STPLKFHLGGKEVIEGLNVGL 429
PL F +G EVI+G + G+
Sbjct: 53 RGKPLTFRIGVGEVIKGWDQGI 74
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 346 MVTENSSAEGKLSLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDS 405
M T + +G S+ L ++ G KP GKK++V Y G+ + Q S
Sbjct: 9 MGTLEAQTQGPGSMSAQLEKKVLTPGDGVTKPQA-----GKKVTVHYDGRFPDGKQFDSS 63
Query: 406 NLGSTPLKFHLGGKEVIEGLNVGLEDFGLKSRLMAT 441
P +F LG EVI+G + G+ L + + T
Sbjct: 64 RSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT 99
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 37.4 bits (85), Expect = 0.018, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 358 SLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLG-STPLKFHL 416
S + T +GL + L G G A G+ +SV YTG L + GQ FDS+ + P F L
Sbjct: 1 STVVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLTD-GQKFDSSKDRNDPFAFVL 57
Query: 417 GGKEVIEGLNVGLE 430
GG VI+G + G++
Sbjct: 58 GGGHVIKGWDEGVQ 71
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 36.6 bits (83), Expect = 0.029, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 362 TLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKE 420
T +GL + L G G A G+ +SV YTG L + GQ FDS+ + P F LGG
Sbjct: 25 TTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGM 81
Query: 421 VIEGLNVGLE 430
VI+G + G++
Sbjct: 82 VIKGWDEGVQ 91
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 36.6 bits (83), Expect = 0.032, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEDF--GLKSRL 438
G +++ YTG L ENGQ FDS++ +P + ++G +VI+G +VG+ G K+RL
Sbjct: 25 GDLVTIHYTGTL-ENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARL 80
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 36.2 bits (82), Expect = 0.039, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 362 TLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKE 420
T +GL + L G G A G+ +SV YTG L + GQ FDS+ + P F LGG
Sbjct: 9 TTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGM 65
Query: 421 VIEGLNVGLE 430
VI+G + G++
Sbjct: 66 VIKGWDEGVQ 75
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 358 SLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGST-PLKFHL 416
S + T +GL + L G G A G+ +SV YTG L +GQ FDS+ P F L
Sbjct: 97 STIVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVL 153
Query: 417 GGKEVIEGLNVGLE 430
GG VI+G + G++
Sbjct: 154 GGGMVIKGWDEGVQ 167
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 358 SLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGST-PLKFHL 416
S + T +GL + L G G A G+ +SV YTG L +GQ FDS+ P +F L
Sbjct: 97 STVVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFEFVL 153
Query: 417 GGKEVIEGLNVGLE 430
GG VI+G + G++
Sbjct: 154 GGGMVIKGWDEGVQ 167
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 35.4 bits (80), Expect = 0.062, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEDFGLKSRLMATKS 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ + R T S
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLTIS 77
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 358 SLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGST-PLKFHL 416
S + T +GL + L G G A G+ +SV YTG L +GQ FDS+ P F L
Sbjct: 97 STVVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVL 153
Query: 417 GGKEVIEGLNVGLE 430
GG VI+G + G++
Sbjct: 154 GGGMVIKGWDEGVQ 167
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 35.4 bits (80), Expect = 0.073, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 366 GLVIQKLGTGKPDGKV-AAPGKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIE 423
G+ ++ + G DG+ G+ V YTG L E+G+ FDS+ + P KF LG +EVI
Sbjct: 1 GVQVETISPG--DGRTFPKAGQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIR 57
Query: 424 GLNVGLEDFGLKSRLMATKS 443
G G+ + R T S
Sbjct: 58 GWEEGVAQMSVGQRAKLTIS 77
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 379 GKVAAPGKKISVLYTGKLKENGQVFDSNLGST-PLKFHLGGKEVIEGLNVGLE 430
G A G+ +SV YTG L +GQ FDS+ P F LGG VI+G + G++
Sbjct: 116 GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 35.0 bits (79), Expect = 0.081, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEDFGLKSRLMATKS 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ + R T S
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLTIS 77
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNL-GSTPLKFHLGGKEVIEGLNVGLEDFGLKSRLMATKS 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI GL G+ + R T S
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLTIS 77
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 35.0 bits (79), Expect = 0.092, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEDFGLKSRLMATKS 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ + R T S
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 34.7 bits (78), Expect = 0.096, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEDFGLKSRLMATKS 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ + R T S
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEDFGLKSRLMATKS 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ + R T S
Sbjct: 21 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 79
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEDFGLKSRLMATKS 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ + R T S
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNL-GSTPLKFHLGGKEVIEGLNVGLEDFGLKSRLMAT 441
G+ V YTG L +NG+ FDS+ + P KF +G +EVI+G G L R T
Sbjct: 19 GQTCVVHYTGML-QNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLT 75
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEDFGLKSRLMATKS 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ + R T S
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLTIS 77
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 379 GKVAAPGKKISVLYTGKLKENGQVFDSNLGST-PLKFHLGGKEVIEGLNVGLE 430
G A G+ +SV YTG L +GQ FDS+ P F LGG VI+G + G++
Sbjct: 20 GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQ 71
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLEDFGLKSRLMATKS 443
G+ V YTG L++ +V S + P KF LG +EVI G G+ + R T S
Sbjct: 19 GQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEDFGLKSRLMATKS 443
G+ V YTG L E+G+ FDS+ + P KF LG +EVI G G+ + R T S
Sbjct: 19 GQTCVVHYTGML-EDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 32.7 bits (73), Expect = 0.38, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 385 GKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLEDFGLKSRLMATKS 443
G+ V YTG L++ ++ S + P KF LG +EVI G G+ + R T S
Sbjct: 19 GQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 379 GKVAAPGKKISVLYTGKLKENGQVFDSNLGST-PLKFHLGGKEVIEGLNVGLE 430
G A G+ +SV YTG L +GQ F S+ P F LGG VI+G + G++
Sbjct: 116 GAEARAGQTVSVHYTGWLT-DGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 31.6 bits (70), Expect = 0.96, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 385 GKKISVLYTGKLKENGQVFDSN-LGSTPLKFHLGGKEVIEGLNVGLEDFGLKSR 437
G+ V YTG L + G+VFDS+ P +F +G EVI G + G+ + R
Sbjct: 20 GQVAVVHYTGTLAD-GKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQR 72
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 392 YTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGL 429
YTGKL E+G FDS+L + P F LG +VI+G + GL
Sbjct: 16 YTGKL-EDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGL 53
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 379 GKVAAPGKKISVLYTGKLKENGQVFDSN-LGSTPLKFHLGGKEVIEGLNVGL 429
G + AP + V Y+G L+ + FDSN TP LG + G+ +GL
Sbjct: 38 GDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGL 89
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 387 KISVLYTGKLKENGQ--VFDSNLGSTPLKFHLGGKEVIEGL 425
K + L +++E G V DSN+ PL+F +G ++I GL
Sbjct: 10 KQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGL 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.307 0.128 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,544,633
Number of Sequences: 62578
Number of extensions: 444388
Number of successful extensions: 663
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 632
Number of HSP's gapped (non-prelim): 37
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (25.0 bits)