Query 013413
Match_columns 443
No_of_seqs 153 out of 1406
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:36:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 99.7 3.6E-18 7.8E-23 162.1 9.1 87 352-443 88-177 (205)
2 PRK11570 peptidyl-prolyl cis-t 99.6 2.8E-15 6.2E-20 142.4 10.9 87 352-443 89-178 (206)
3 KOG0549 FKBP-type peptidyl-pro 99.6 6.6E-15 1.4E-19 138.0 9.1 82 361-443 64-148 (188)
4 KOG0552 FKBP-type peptidyl-pro 99.6 9.4E-15 2E-19 141.0 10.0 81 361-443 116-199 (226)
5 KOG0544 FKBP-type peptidyl-pro 99.5 1.1E-14 2.3E-19 124.6 7.8 75 366-443 2-80 (108)
6 PRK10902 FKBP-type peptidyl-pr 99.5 7.7E-14 1.7E-18 137.6 11.2 87 352-443 133-222 (269)
7 TIGR03516 ppisom_GldI peptidyl 99.5 1.5E-13 3.2E-18 128.0 11.3 85 358-443 62-148 (177)
8 PF00254 FKBP_C: FKBP-type pep 99.2 7.3E-11 1.6E-15 96.6 8.4 63 380-443 3-68 (94)
9 PRK15095 FKBP-type peptidyl-pr 99.2 7.2E-11 1.6E-15 107.9 8.4 62 381-443 4-68 (156)
10 COG1047 SlpA FKBP-type peptidy 99.0 9.9E-10 2.1E-14 102.9 8.5 62 381-443 2-66 (174)
11 PRK10737 FKBP-type peptidyl-pr 98.9 2.3E-09 5E-14 102.0 8.7 62 381-443 2-65 (196)
12 TIGR00115 tig trigger factor. 97.9 3E-05 6.6E-10 79.6 8.2 60 380-442 145-206 (408)
13 KOG0543 FKBP-type peptidyl-pro 97.9 4.7E-05 1E-09 79.4 9.2 76 364-443 83-161 (397)
14 PRK01490 tig trigger factor; P 97.9 4.2E-05 9.2E-10 79.3 8.2 59 380-441 156-216 (435)
15 COG0544 Tig FKBP-type peptidyl 97.7 8.3E-05 1.8E-09 78.6 7.3 57 382-441 158-218 (441)
16 KOG0543 FKBP-type peptidyl-pro 97.6 5.5E-05 1.2E-09 78.9 4.6 55 380-435 7-63 (397)
17 KOG0545 Aryl-hydrocarbon recep 87.8 0.3 6.4E-06 49.6 1.8 75 364-440 9-89 (329)
18 PF01346 FKBP_N: Domain amino 62.7 5.6 0.00012 34.4 2.2 20 352-371 105-124 (124)
19 PF08729 HUN: HPC2 and ubinucl 34.4 20 0.00043 28.0 1.0 12 36-47 18-29 (55)
20 PRK00226 greA transcription el 27.0 1.7E+02 0.0038 26.7 6.0 23 420-442 121-145 (157)
21 PF15260 FAM219A: Protein fami 26.8 38 0.00082 31.0 1.6 22 36-57 88-110 (125)
22 KOG3540 Beta amyloid precursor 24.6 43 0.00093 37.1 1.8 29 16-44 194-222 (615)
23 KOG1824 TATA-binding protein-i 22.8 40 0.00087 40.1 1.2 23 26-48 322-344 (1233)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.6e-18 Score=162.10 Aligned_cols=87 Identities=38% Similarity=0.625 Sum_probs=82.2
Q ss_pred hhhcCCCCeeeCCCCeEEEEeecCCCCCcccCCCCEEEEEEEEEEccCCcEEecCCCC-CceEEEeCCCcchHHHHHHhc
Q 013413 352 SAEGKLSLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGGKEVIEGLNVGLE 430 (443)
Q Consensus 352 ~~ekK~~~v~T~~sGL~yqvLkkG~~~Gk~pk~GD~VtVhYtGkL~~DGkVFDSS~~~-ePf~F~LG~GqLIpG~EeaLl 430 (443)
+.+++..+++++++||+|.++..| .|..|..++.|+|||+|+| .||++||+++.+ +|+.|.|| ++|+||.+||.
T Consensus 88 ~~~~k~~~v~~~~sgl~y~~~~~G--~G~~~~~~~~V~vhY~G~l-~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~ 162 (205)
T COG0545 88 EKNAKEKGVKTLPSGLQYKVLKAG--DGAAPKKGDTVTVHYTGTL-IDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQ 162 (205)
T ss_pred hhhcccCCceECCCCcEEEEEecc--CCCCCCCCCEEEEEEEEec-CCCCccccccccCCCceeecC--CeeehHHHHHh
Confidence 456788899999999999999999 7999999999999999999 999999999987 89999997 99999999999
Q ss_pred C--CCcEEEEEEcCC
Q 013413 431 D--FGLKSRLMATKS 443 (443)
Q Consensus 431 G--vGEKr~ViIPPe 443 (443)
+ +|++|+|+|||+
T Consensus 163 ~M~vG~k~~l~IP~~ 177 (205)
T COG0545 163 GMKVGGKRKLTIPPE 177 (205)
T ss_pred hCCCCceEEEEeCch
Confidence 9 999999999985
No 2
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.61 E-value=2.8e-15 Score=142.38 Aligned_cols=87 Identities=31% Similarity=0.473 Sum_probs=80.4
Q ss_pred hhhcCCCCeeeCCCCeEEEEeecCCCCCcccCCCCEEEEEEEEEEccCCcEEecCCCC-CceEEEeCCCcchHHHHHHhc
Q 013413 352 SAEGKLSLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGGKEVIEGLNVGLE 430 (443)
Q Consensus 352 ~~ekK~~~v~T~~sGL~yqvLkkG~~~Gk~pk~GD~VtVhYtGkL~~DGkVFDSS~~~-ePf~F~LG~GqLIpG~EeaLl 430 (443)
+++++..++.++++||+|++++.| .|..|..++.|.|||+|++ .+|++|+++|.+ .|+.|.+| .+|+||+++|.
T Consensus 89 ~~~~k~~gv~~t~sGl~y~vi~~G--~G~~p~~~d~V~v~Y~g~l-~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~ 163 (206)
T PRK11570 89 EENAKKEGVNSTESGLQFRVLTQG--EGAIPARTDRVRVHYTGKL-IDGTVFDSSVARGEPAEFPVN--GVIPGWIEALT 163 (206)
T ss_pred HHhhhcCCcEECCCCcEEEEEeCC--CCCCCCCCCEEEEEEEEEE-CCCCEEEeccCCCCCeEEEee--chhhHHHHHHc
Confidence 456778899999999999999999 6999999999999999999 899999999975 89999995 79999999999
Q ss_pred C--CCcEEEEEEcCC
Q 013413 431 D--FGLKSRLMATKS 443 (443)
Q Consensus 431 G--vGEKr~ViIPPe 443 (443)
+ +|++|+|+|||+
T Consensus 164 ~M~~G~k~~~~IP~~ 178 (206)
T PRK11570 164 LMPVGSKWELTIPHE 178 (206)
T ss_pred CCCCCCEEEEEECHH
Confidence 9 999999999984
No 3
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6.6e-15 Score=138.00 Aligned_cols=82 Identities=33% Similarity=0.492 Sum_probs=76.0
Q ss_pred eeCCCCeEEEEeecCCCCCcccCCCCEEEEEEEEEEccCCcEEecCCCC-CceEEEeCCCcchHHHHHHhcC--CCcEEE
Q 013413 361 RTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGGKEVIEGLNVGLED--FGLKSR 437 (443)
Q Consensus 361 ~T~~sGL~yqvLkkG~~~Gk~pk~GD~VtVhYtGkL~~DGkVFDSS~~~-ePf~F~LG~GqLIpG~EeaLlG--vGEKr~ 437 (443)
....+.|++.++.....+...++.||+|.+||+|.+ .||++|||||.+ +||.|+||.|++|+||+++|+| +||+|.
T Consensus 64 ~~~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~l-eDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRk 142 (188)
T KOG0549|consen 64 WNPDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSL-EDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRK 142 (188)
T ss_pred cCCCCceeEEEEECCccccccccCCCEEEEEEEEEe-cCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceE
Confidence 456789999999986557889999999999999998 999999999998 6999999999999999999999 999999
Q ss_pred EEEcCC
Q 013413 438 LMATKS 443 (443)
Q Consensus 438 ViIPPe 443 (443)
|+|||+
T Consensus 143 l~IPp~ 148 (188)
T KOG0549|consen 143 LIIPPH 148 (188)
T ss_pred EecCcc
Confidence 999996
No 4
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=9.4e-15 Score=141.03 Aligned_cols=81 Identities=52% Similarity=0.862 Sum_probs=77.8
Q ss_pred eeCCCCeEEEEeecCCCCCcccCCCCEEEEEEEEEEccCCcEEecCCCCCceE-EEeCCCcchHHHHHHhcC--CCcEEE
Q 013413 361 RTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLK-FHLGGKEVIEGLNVGLED--FGLKSR 437 (443)
Q Consensus 361 ~T~~sGL~yqvLkkG~~~Gk~pk~GD~VtVhYtGkL~~DGkVFDSS~~~ePf~-F~LG~GqLIpG~EeaLlG--vGEKr~ 437 (443)
+|+++||+|..+..| .|..|..|+.|.|+|.|++..+|++|++++.+.||. |++|.+.||+||+.+|.| +|.+|+
T Consensus 116 ~tl~~Gl~y~D~~vG--~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVG--SGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEec--CCCCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 799999999999999 699999999999999999944999999999999999 999999999999999999 999999
Q ss_pred EEEcCC
Q 013413 438 LMATKS 443 (443)
Q Consensus 438 ViIPPe 443 (443)
|+|||+
T Consensus 194 viIPp~ 199 (226)
T KOG0552|consen 194 VIIPPE 199 (226)
T ss_pred EEeCcc
Confidence 999995
No 5
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.1e-14 Score=124.60 Aligned_cols=75 Identities=36% Similarity=0.687 Sum_probs=70.7
Q ss_pred CeEEEEeecCCCCC-cccCCCCEEEEEEEEEEccCCcEEecCCCC-CceEEEeCCCcchHHHHHHhcC--CCcEEEEEEc
Q 013413 366 GLVIQKLGTGKPDG-KVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGGKEVIEGLNVGLED--FGLKSRLMAT 441 (443)
Q Consensus 366 GL~yqvLkkG~~~G-k~pk~GD~VtVhYtGkL~~DGkVFDSS~~~-ePf~F~LG~GqLIpG~EeaLlG--vGEKr~ViIP 441 (443)
|+.+++|..| +| ..|+.|++|++||+|.| .||+.|||+.++ .||.|.+|.|++|.||+++|.. +|++.+|.|+
T Consensus 2 Gv~~~~i~~G--dg~tfpK~Gqtvt~hYtg~L-~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~ 78 (108)
T KOG0544|consen 2 GVEKQVISPG--DGRTFPKKGQTVTVHYTGTL-QDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTIS 78 (108)
T ss_pred CceeEEeeCC--CCcccCCCCCEEEEEEEeEe-cCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeec
Confidence 7899999999 67 57999999999999999 999999999887 8999999999999999999999 9999999998
Q ss_pred CC
Q 013413 442 KS 443 (443)
Q Consensus 442 Pe 443 (443)
|+
T Consensus 79 pd 80 (108)
T KOG0544|consen 79 PD 80 (108)
T ss_pred cc
Confidence 84
No 6
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.51 E-value=7.7e-14 Score=137.61 Aligned_cols=87 Identities=29% Similarity=0.446 Sum_probs=79.3
Q ss_pred hhhcCCCCeeeCCCCeEEEEeecCCCCCcccCCCCEEEEEEEEEEccCCcEEecCCCC-CceEEEeCCCcchHHHHHHhc
Q 013413 352 SAEGKLSLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGGKEVIEGLNVGLE 430 (443)
Q Consensus 352 ~~ekK~~~v~T~~sGL~yqvLkkG~~~Gk~pk~GD~VtVhYtGkL~~DGkVFDSS~~~-ePf~F~LG~GqLIpG~EeaLl 430 (443)
+++++..++.++++||+|+++..| .|..|+.||.|.|||+|++ .+|++|++++.+ .|+.|.+ +.+|+||+++|.
T Consensus 133 ~~~~k~~gv~~t~sGl~y~Vi~~G--~G~~p~~gD~V~V~Y~g~l-~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~ 207 (269)
T PRK10902 133 EKFAKEKGVKTTSTGLLYKVEKEG--TGEAPKDSDTVVVNYKGTL-IDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLK 207 (269)
T ss_pred HHhccCCCcEECCCccEEEEEeCC--CCCCCCCCCEEEEEEEEEe-CCCCEeeccccCCCceEEec--CCcchHHHHHHh
Confidence 455777789999999999999999 6899999999999999998 899999999875 7888887 479999999999
Q ss_pred C--CCcEEEEEEcCC
Q 013413 431 D--FGLKSRLMATKS 443 (443)
Q Consensus 431 G--vGEKr~ViIPPe 443 (443)
+ +|++|+|+|||.
T Consensus 208 ~Mk~Gek~~l~IP~~ 222 (269)
T PRK10902 208 NIKKGGKIKLVIPPE 222 (269)
T ss_pred cCCCCcEEEEEECch
Confidence 9 999999999983
No 7
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.49 E-value=1.5e-13 Score=127.98 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=77.5
Q ss_pred CCeeeCCCCeEEEEeecCCCCCcccCCCCEEEEEEEEEEccCCcEEecCCCCCceEEEeCCCcchHHHHHHhcC--CCcE
Q 013413 358 SLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLED--FGLK 435 (443)
Q Consensus 358 ~~v~T~~sGL~yqvLkkG~~~Gk~pk~GD~VtVhYtGkL~~DGkVFDSS~~~ePf~F~LG~GqLIpG~EeaLlG--vGEK 435 (443)
....++++|++|.++..+..+|..|..||.|++||++++ .+|++|++++...|+.|.+|.+++++||+++|.+ +|++
T Consensus 62 ~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~-~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~ 140 (177)
T TIGR03516 62 VKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRA-LDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGET 140 (177)
T ss_pred CCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEe-CCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCE
Confidence 445889999999999775436788999999999999999 8999999998778999999999999999999999 9999
Q ss_pred EEEEEcCC
Q 013413 436 SRLMATKS 443 (443)
Q Consensus 436 r~ViIPPe 443 (443)
|+|+|||+
T Consensus 141 ~~~~iP~~ 148 (177)
T TIGR03516 141 ATFLFPSH 148 (177)
T ss_pred EEEEECHH
Confidence 99999984
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.19 E-value=7.3e-11 Score=96.58 Aligned_cols=63 Identities=35% Similarity=0.673 Sum_probs=58.9
Q ss_pred cccCCCCEEEEEEEEEEccCCcEEecCCCC-CceEEEeCCCcchHHHHHHhcC--CCcEEEEEEcCC
Q 013413 380 KVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGGKEVIEGLNVGLED--FGLKSRLMATKS 443 (443)
Q Consensus 380 k~pk~GD~VtVhYtGkL~~DGkVFDSS~~~-ePf~F~LG~GqLIpG~EeaLlG--vGEKr~ViIPPe 443 (443)
+.|+.||.|+|||.+++ .+|++|++++.. .|+.|.+|.+.+|+||+++|.+ +|++|+|+|||+
T Consensus 3 ~~~~~gd~V~i~y~~~~-~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~ 68 (94)
T PF00254_consen 3 RTPKEGDTVTIHYTGRL-EDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPE 68 (94)
T ss_dssp SSBSTTSEEEEEEEEEE-TTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGG
T ss_pred ccCCCCCEEEEEEEEEE-CCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCCh
Confidence 56999999999999999 699999999754 8999999999999999999999 999999999984
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.17 E-value=7.2e-11 Score=107.92 Aligned_cols=62 Identities=26% Similarity=0.357 Sum_probs=58.6
Q ss_pred ccCCCCEEEEEEEEEEccCCcEEecCCC-CCceEEEeCCCcchHHHHHHhcC--CCcEEEEEEcCC
Q 013413 381 VAAPGKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLED--FGLKSRLMATKS 443 (443)
Q Consensus 381 ~pk~GD~VtVhYtGkL~~DGkVFDSS~~-~ePf~F~LG~GqLIpG~EeaLlG--vGEKr~ViIPPe 443 (443)
.++.|++|+|||++++ .+|++|++++. +.|+.|.+|.+++++||+++|.+ +|+++.|+|||+
T Consensus 4 ~i~~~~~V~v~Y~~~~-~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~ 68 (156)
T PRK15095 4 SVQSNSAVLVHFTLKL-DDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPE 68 (156)
T ss_pred ccCCCCEEEEEEEEEe-CCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChH
Confidence 5789999999999999 89999999987 48999999999999999999999 999999999984
No 10
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=9.9e-10 Score=102.86 Aligned_cols=62 Identities=29% Similarity=0.423 Sum_probs=58.8
Q ss_pred ccCCCCEEEEEEEEEEccCCcEEecCCC-CCceEEEeCCCcchHHHHHHhcC--CCcEEEEEEcCC
Q 013413 381 VAAPGKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLED--FGLKSRLMATKS 443 (443)
Q Consensus 381 ~pk~GD~VtVhYtGkL~~DGkVFDSS~~-~ePf~F~LG~GqLIpG~EeaLlG--vGEKr~ViIPPe 443 (443)
++..|++|+|+|++++ .+|++||+|.. ..|+.|++|.|++|+||++||+| +|+++.|.|||+
T Consensus 2 ~i~k~~~V~i~Y~~~~-~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE 66 (174)
T COG1047 2 KIEKGDVVSLHYTLKV-EDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPE 66 (174)
T ss_pred cccCCCEEEEEEEEEe-cCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCch
Confidence 5788999999999999 78999999987 68999999999999999999999 999999999995
No 11
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.95 E-value=2.3e-09 Score=101.97 Aligned_cols=62 Identities=27% Similarity=0.382 Sum_probs=58.8
Q ss_pred ccCCCCEEEEEEEEEEccCCcEEecCCCCCceEEEeCCCcchHHHHHHhcC--CCcEEEEEEcCC
Q 013413 381 VAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLED--FGLKSRLMATKS 443 (443)
Q Consensus 381 ~pk~GD~VtVhYtGkL~~DGkVFDSS~~~ePf~F~LG~GqLIpG~EeaLlG--vGEKr~ViIPPe 443 (443)
+++.+++|+|+|++++ .+|++|++++...|+.|++|.++|||||+++|.+ +|+++.|.|||+
T Consensus 2 kI~~~~vV~l~Y~l~~-~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~pe 65 (196)
T PRK10737 2 KVAKDLVVSLAYQVRT-EDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAN 65 (196)
T ss_pred ccCCCCEEEEEEEEEe-CCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChH
Confidence 4778999999999999 8999999998889999999999999999999999 999999999984
No 12
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=97.91 E-value=3e-05 Score=79.63 Aligned_cols=60 Identities=20% Similarity=0.449 Sum_probs=54.2
Q ss_pred cccCCCCEEEEEEEEEEccCCcEEecCCCCCceEEEeCCCcchHHHHHHhcC--CCcEEEEEEcC
Q 013413 380 KVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLED--FGLKSRLMATK 442 (443)
Q Consensus 380 k~pk~GD~VtVhYtGkL~~DGkVFDSS~~~ePf~F~LG~GqLIpG~EeaLlG--vGEKr~ViIPP 442 (443)
+++..||+|+|+|+++. +|..|+++. ..++.|.+|.+.+++||+++|.| +|+++.|.||.
T Consensus 145 ~~~~~gD~V~v~~~~~~--dg~~~~~~~-~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~ 206 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI--DGEAFEGGK-AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTF 206 (408)
T ss_pred cccCCCCEEEEEEEEEE--CCEECcCCC-CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecC
Confidence 35889999999999987 899998764 48999999999999999999999 99999998874
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=4.7e-05 Score=79.40 Aligned_cols=76 Identities=28% Similarity=0.441 Sum_probs=64.3
Q ss_pred CCCeEEEEeecCCCCCcccCCCCEEEEEEEEEEccCCcEEecCCCCCceEEEeCC-CcchHHHHHHhcC--CCcEEEEEE
Q 013413 364 PNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGG-KEVIEGLNVGLED--FGLKSRLMA 440 (443)
Q Consensus 364 ~sGL~yqvLkkG~~~Gk~pk~GD~VtVhYtGkL~~DGkVFDSS~~~ePf~F~LG~-GqLIpG~EeaLlG--vGEKr~ViI 440 (443)
+++|..+|++.|.++=..|-.|.+|.|||.|++ .++ +|+.+. -.|.|.+|. ..+|.||+.+|.. +|+.+.|+|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~-~~~-~f~~~~--~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i 158 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGEL-EDG-VFDQRE--LRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTI 158 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEE-CCc-ceeccc--cceEEecCCccchhHHHHHHHHhcCccceEEEEe
Confidence 899999999999421267889999999999999 666 887654 347888887 4799999999999 999999999
Q ss_pred cCC
Q 013413 441 TKS 443 (443)
Q Consensus 441 PPe 443 (443)
+|.
T Consensus 159 ~~~ 161 (397)
T KOG0543|consen 159 DPK 161 (397)
T ss_pred Ccc
Confidence 973
No 14
>PRK01490 tig trigger factor; Provisional
Probab=97.85 E-value=4.2e-05 Score=79.32 Aligned_cols=59 Identities=20% Similarity=0.453 Sum_probs=53.0
Q ss_pred cccCCCCEEEEEEEEEEccCCcEEecCCCCCceEEEeCCCcchHHHHHHhcC--CCcEEEEEEc
Q 013413 380 KVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLED--FGLKSRLMAT 441 (443)
Q Consensus 380 k~pk~GD~VtVhYtGkL~~DGkVFDSS~~~ePf~F~LG~GqLIpG~EeaLlG--vGEKr~ViIP 441 (443)
.+++.||+|+|+|.|++ +|..|+.+. ..++.|.+|.+.+++||+++|.| +|+++.|.|+
T Consensus 156 ~~~~~gD~V~vd~~~~~--~g~~~~~~~-~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~ 216 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI--DGEEFEGGK-AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVT 216 (435)
T ss_pred ccCCCCCEEEEEEEEEE--CCEECcCCC-CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEec
Confidence 35899999999999998 899998763 47999999999999999999999 9999998775
No 15
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=8.3e-05 Score=78.64 Aligned_cols=57 Identities=19% Similarity=0.436 Sum_probs=50.8
Q ss_pred cCCCCEEEEEEEEEEccCCcEEecCCCCCceEEEeCCCcchHHHHHHhcC--CCcEEEE--EEc
Q 013413 382 AAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLED--FGLKSRL--MAT 441 (443)
Q Consensus 382 pk~GD~VtVhYtGkL~~DGkVFDSS~~~ePf~F~LG~GqLIpG~EeaLlG--vGEKr~V--iIP 441 (443)
++.||.|+|+|.|+. ||..|.... +..|.|.||.|++||||+.+|+| +|+...| ++|
T Consensus 158 a~~gD~v~IDf~g~i--Dg~~fegg~-ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP 218 (441)
T COG0544 158 AENGDRVTIDFEGSV--DGEEFEGGK-AENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFP 218 (441)
T ss_pred cccCCEEEEEEEEEE--cCeeccCcc-ccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcc
Confidence 899999999999987 999998753 47899999999999999999999 9999774 444
No 16
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=5.5e-05 Score=78.92 Aligned_cols=55 Identities=38% Similarity=0.668 Sum_probs=50.6
Q ss_pred cccCCCCEEEEEEEEEEccCCcEEecCCCCCceEEEeCCCcchHHHHHHhcC-C-CcE
Q 013413 380 KVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLED-F-GLK 435 (443)
Q Consensus 380 k~pk~GD~VtVhYtGkL~~DGkVFDSS~~~ePf~F~LG~GqLIpG~EeaLlG-v-GEK 435 (443)
..|..|+.|.+||+|++ .||+.||+|.++.||.|.+|.|.+|.||..++.. . |+.
T Consensus 7 ~~p~~g~~v~~hytg~l-~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~g~~ 63 (397)
T KOG0543|consen 7 ETPMTGDKVEVHYTGTL-LDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKKGEA 63 (397)
T ss_pred cCCCCCceeEEEEeEEe-cCCeecccccCCCceeeecCCCcccccccccccccccccc
Confidence 57999999999999999 9999999998888999999999999999999987 3 654
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.77 E-value=0.3 Score=49.64 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=59.6
Q ss_pred CCCeEEEEeecCCCCCcc--cCCCCEEEEEEEEEEc-cCCcEEecCCCC-CceEEEeCCCcchHHHHHHhcC--CCcEEE
Q 013413 364 PNGLVIQKLGTGKPDGKV--AAPGKKISVLYTGKLK-ENGQVFDSNLGS-TPLKFHLGGKEVIEGLNVGLED--FGLKSR 437 (443)
Q Consensus 364 ~sGL~yqvLkkG~~~Gk~--pk~GD~VtVhYtGkL~-~DGkVFDSS~~~-ePf~F~LG~GqLIpG~EeaLlG--vGEKr~ 437 (443)
-.|++.++|..| .|.- ...|..|++||+.... ..++++|.|... .|+.+++|.-=-++-|+.-|.. +++-..
T Consensus 9 ~~gv~Kril~~G--~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Evaq 86 (329)
T KOG0545|consen 9 VEGVKKRILHGG--TGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQ 86 (329)
T ss_pred chhhhHhhccCC--CccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence 468999999999 5764 5679999999998762 236799887653 8999999977678999999887 777666
Q ss_pred EEE
Q 013413 438 LMA 440 (443)
Q Consensus 438 ViI 440 (443)
|.|
T Consensus 87 F~~ 89 (329)
T KOG0545|consen 87 FWC 89 (329)
T ss_pred hhh
Confidence 554
No 18
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=62.70 E-value=5.6 Score=34.38 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=15.2
Q ss_pred hhhcCCCCeeeCCCCeEEEE
Q 013413 352 SAEGKLSLLRTLPNGLVIQK 371 (443)
Q Consensus 352 ~~ekK~~~v~T~~sGL~yqv 371 (443)
+++++..+|+++++||+|+|
T Consensus 105 a~n~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 105 AENAKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHHTSTTEEE-TTS-EEEE
T ss_pred HHHcCCCCCEECCCCCeeeC
Confidence 45577889999999999986
No 19
>PF08729 HUN: HPC2 and ubinuclein domain; InterPro: IPR014840 HPC2 is required for cell-cycle regulation of histone transcription []. It regulates transcription of the histone genes during the S-phase of the cell cycle by repressing transcription at other cell cycle stages. HPC2 mutants display synthetic interactions with FACT complex, which allows RNA Pol II to elongate through nucleosomes [].
Probab=34.44 E-value=20 Score=27.96 Aligned_cols=12 Identities=42% Similarity=0.758 Sum_probs=9.3
Q ss_pred CccCCCcccCCC
Q 013413 36 DKYDDSFINDAD 47 (443)
Q Consensus 36 d~y~D~fi~ddd 47 (443)
++.+|+||||+.
T Consensus 18 YD~~D~FIDDsE 29 (55)
T PF08729_consen 18 YDTDDPFIDDSE 29 (55)
T ss_pred ccCCCCCcCCHH
Confidence 444589999997
No 20
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=27.01 E-value=1.7e+02 Score=26.74 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=19.5
Q ss_pred cchHHHHHHhcC--CCcEEEEEEcC
Q 013413 420 EVIEGLNVGLED--FGLKSRLMATK 442 (443)
Q Consensus 420 qLIpG~EeaLlG--vGEKr~ViIPP 442 (443)
.+...+-.+|+| +|+.+.|.+|.
T Consensus 121 S~~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 121 SIESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred ccCChHHHHHhCCCCCCEEEEEcCC
Confidence 455678899999 99999998885
No 21
>PF15260 FAM219A: Protein family FAM219A
Probab=26.82 E-value=38 Score=31.03 Aligned_cols=22 Identities=59% Similarity=1.060 Sum_probs=19.0
Q ss_pred CccC-CCcccCCCCCCCCCCCCC
Q 013413 36 DKYD-DSFINDADLDIIPPSPVS 57 (443)
Q Consensus 36 d~y~-D~fi~ddd~e~~~~s~~~ 57 (443)
|+|. |+--||.|+++++|.|+.
T Consensus 88 DGy~LDE~pDdEdLDLIPPk~~~ 110 (125)
T PF15260_consen 88 DGYRLDEIPDDEDLDLIPPKPVS 110 (125)
T ss_pred cccccccCCchhccccCCCcccc
Confidence 9999 666777799999999986
No 22
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=24.64 E-value=43 Score=37.08 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=22.6
Q ss_pred ccCcccccccccccCCCCCCCccCCCccc
Q 013413 16 SYGEDIADTETERSTGHSDEDKYDDSFIN 44 (443)
Q Consensus 16 s~gedi~~te~e~s~~~d~ed~y~D~fi~ 44 (443)
++.-|.|.++++++++.|.+|+|.|+|.+
T Consensus 194 ~~~~~~~~~eede~dd~d~~d~~ede~~e 222 (615)
T KOG3540|consen 194 TDKVDVAKTEEDEDDDDDYDDGYEDEYSE 222 (615)
T ss_pred CCcccccccCcccCCcccccccccccccc
Confidence 44557788888888888888999998843
No 23
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=22.76 E-value=40 Score=40.10 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=15.7
Q ss_pred ccccCCCCCCCccCCCcccCCCC
Q 013413 26 TERSTGHSDEDKYDDSFINDADL 48 (443)
Q Consensus 26 ~e~s~~~d~ed~y~D~fi~ddd~ 48 (443)
...+.++.+||+|+|+|.||+|.
T Consensus 322 d~~~~ed~eDde~~deYsDDeD~ 344 (1233)
T KOG1824|consen 322 DAMFLEDEEDDEQDDEYSDDEDM 344 (1233)
T ss_pred hhhhhhccccchhccccccccch
Confidence 34455555667777889888884
Done!