BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013414
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V82|A Chain A, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V82|B Chain B, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V83|A Chain A, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V83|B Chain B, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V84|A Chain A, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
pdb|1V84|B Chain B, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
Length = 253
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 122/241 (50%), Gaps = 33/241 (13%)
Query: 189 IIIVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVE-MTSQSEETADVLRRTGVMYRHL 247
I +VTPT ++P Q L R+A+TL V P L W+VVE ++ TA +LR TG+ Y HL
Sbjct: 5 IHVVTPTYSRPVQKAELTRMANTLLHV-PNLHWLVVEDAPRRTPLTARLLRDTGLNYTHL 63
Query: 248 VCK-----KNLTDVKDTRV----HQRNVALSHIE-----NHHLDGIVYFADENNIYLTDL 293
+ K D +D R+ QRN+AL + N G+VYFAD++N Y +L
Sbjct: 64 HVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLEL 123
Query: 294 FEELRQIRRFGTWTVGKLSENKMDTILEGPICNGT-RVIGWH-VNEPRERFRRFHAEMSG 351
FEE+R RR W V + + E P NG +V+ W V +P R F +M+G
Sbjct: 124 FEEMRSTRRVSVWPVAFVGGLRY----EAPRVNGAGKVVRWKTVFDPH---RPFAIDMAG 176
Query: 352 FAFNSTILWDPKRWHRPTLEPIRQVVTVKDGFQASTFVEQIVEDESQMEGLLEECSRIMA 411
FA N ++ + ++ VK G+Q S+ + ++V + +E C++I+
Sbjct: 177 FAVNLRLILQRS-------QAYFKLRGVKGGYQESSLLRELV-TLNDLEPKAANCTKILV 228
Query: 412 W 412
W
Sbjct: 229 W 229
>pdb|2D0J|A Chain A, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|B Chain B, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|C Chain C, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|D Chain D, Crystal Structure Of Human Glcat-S Apo Form
Length = 246
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 119/252 (47%), Gaps = 28/252 (11%)
Query: 189 IIIVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVE-MTSQSEETADVLRRTGVMYRHL 247
I +TPT ++P Q L RLA+T R V L WI+VE ++SE + L R G+ HL
Sbjct: 5 IYAITPTYSRPVQKAELTRLANTFRQVAQ-LHWILVEDAAARSELVSRFLARAGLPSTHL 63
Query: 248 ---VCKKNLTDVKDTRVHQRNVALSHIENHHLD-----GIVYFADENNIYLTDLFEELRQ 299
++ QRN L+ + H G+++FAD++N Y +LF+E+R
Sbjct: 64 HVPTPRRYKRPGLPRATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRT 123
Query: 300 IRRFGTWTVGKLSENKMDTILEGPICNGTRVIGWHVNEPRERFRRFHAEMSGFAFN-STI 358
R+ W VG + + E P+ +V+GW+ + R F +M+GFA + I
Sbjct: 124 TRKVSVWPVGLVGGRRY----ERPLVENGKVVGWYTGWRAD--RPFAIDMAGFAVSLQVI 177
Query: 359 LWDPKR-WHRPTLEPIRQVVTVKDGFQASTFVEQIVEDESQMEGLLEECSRIMAWLLPLE 417
L +PK + R +P G Q S F++QI E ++E C++++ W E
Sbjct: 178 LSNPKAVFKRRGSQP---------GMQESDFLKQITTVE-ELEPKANNCTKVLVWHTRTE 227
Query: 418 SSNAFYPQKWFL 429
N K+ L
Sbjct: 228 KVNLANEPKYHL 239
>pdb|3CU0|A Chain A, Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In
Complex With Udp And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser
pdb|3CU0|B Chain B, Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In
Complex With Udp And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser
Length = 281
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 113/252 (44%), Gaps = 41/252 (16%)
Query: 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVE-MTSQSEETADVLRRTGVM 243
S I +VTPT A+ Q L RL+ TL +V P L W++VE + + +L +G++
Sbjct: 19 SHMTIYVVTPTYARLVQKAELVRLSQTLSLV-PRLHWLLVEDAEGPTPLVSGLLAASGLL 77
Query: 244 YRHLVC----KKNLTDVKDTRVH-----QRNVALSHIENHH-------------LDGIVY 281
+ HLV + L + + VH QRN AL + G+VY
Sbjct: 78 FTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVY 137
Query: 282 FADENNIYLTDLFEELRQIRRFGTWTVGKLSENKMDTILEGPICNGTRVIGWHVNEPRER 341
FAD++N Y +LFEE+R R W VG + + EGP RV+G+H E
Sbjct: 138 FADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLR----FEGPQVQDGRVVGFHTA--WEP 191
Query: 342 FRRFHAEMSGFAFNSTILWDPKRWHRPTLEPIRQV-VTVKDGFQASTFVEQIVEDESQME 400
R F +M+GFA +L D +P Q T G S+ + +V D +E
Sbjct: 192 SRPFPVDMAGFAVALPLLLD---------KPNAQFDSTAPRGHLESSLLSHLV-DPKDLE 241
Query: 401 GLLEECSRIMAW 412
C+R++ W
Sbjct: 242 PRAANCTRVLVW 253
>pdb|1FGG|A Chain A, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
pdb|1FGG|B Chain B, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
pdb|1KWS|A Chain A, Crystal Structure Of Beta1,3-glucuronyltransferase I In
Complex With The Active Udp-glcua Donor
pdb|1KWS|B Chain B, Crystal Structure Of Beta1,3-glucuronyltransferase I In
Complex With The Active Udp-glcua Donor
Length = 261
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 112/248 (45%), Gaps = 41/248 (16%)
Query: 189 IIIVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVE-MTSQSEETADVLRRTGVMYRHL 247
I +VTPT A+ Q L RL+ TL +V P L W++VE + + +L +G+++ HL
Sbjct: 3 IYVVTPTYARLVQKAELVRLSQTLSLV-PRLHWLLVEDAEGPTPLVSGLLAASGLLFTHL 61
Query: 248 VC----KKNLTDVKDTRVH-----QRNVALSHIENHH-------------LDGIVYFADE 285
V + L + + VH QRN AL + G+VYFAD+
Sbjct: 62 VVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADD 121
Query: 286 NNIYLTDLFEELRQIRRFGTWTVGKLSENKMDTILEGPICNGTRVIGWHVNEPRERFRRF 345
+N Y +LFEE+R R W VG + + EGP RV+G+H E R F
Sbjct: 122 DNTYSRELFEEMRWTRGVSVWPVGLVGGLR----FEGPQVQDGRVVGFHTA--WEPSRPF 175
Query: 346 HAEMSGFAFNSTILWDPKRWHRPTLEPIRQV-VTVKDGFQASTFVEQIVEDESQMEGLLE 404
+M+GFA +L D +P Q T G S+ + +V D +E
Sbjct: 176 PVDMAGFAVALPLLLD---------KPNAQFDSTAPRGHLESSLLSHLV-DPKDLEPRAA 225
Query: 405 ECSRIMAW 412
C+R++ W
Sbjct: 226 NCTRVLVW 233
>pdb|2Q98|A Chain A, X-Ray Structure Of A Prolactin Antagonist
Length = 191
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 348 EMSGFAFNSTILWDPKRWHRPTLEPIRQVVTVKDGFQAS--TFVEQIVEDESQMEGLLEE 405
+M+ F S I+ + W+ EP+ +VT G Q + + + VE E Q + LLE
Sbjct: 66 QMNQKDFLSLIVSILRSWN----EPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLER 121
Query: 406 CSRIMAWLLPLESSNAFYP 424
I++ + P N YP
Sbjct: 122 MELIVSQVHPETKENEIYP 140
>pdb|3D48|P Chain P, Crystal Structure Of A Prolactin Receptor Antagonist Bound
To The Extracellular Domain Of The Prolactin Receptor
Length = 188
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 348 EMSGFAFNSTILWDPKRWHRPTLEPIRQVVTVKDGFQAS--TFVEQIVEDESQMEGLLEE 405
+M+ F S I+ + W+ EP+ +VT G Q + + + VE E Q + LLE
Sbjct: 63 QMNQKDFLSLIVSILRSWN----EPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLER 118
Query: 406 CSRIMAWLLPLESSNAFYP 424
I++ + P N YP
Sbjct: 119 MELIVSQVHPETKENEIYP 137
>pdb|3MZG|A Chain A, Crystal Structure Of A Human Prolactin Receptor Antagonist
In Complex With The Extracellular Domain Of The Human
Prolactin Receptor
pdb|3NCC|A Chain A, A Human Prolactin Receptor Antagonist In Complex With The
Mutant Extracellular Domain H188a Of The Human Prolactin
Receptor
Length = 186
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 348 EMSGFAFNSTILWDPKRWHRPTLEPIRQVVTVKDGFQAS--TFVEQIVEDESQMEGLLEE 405
+M+ F S I+ + W+ EP+ +VT G Q + + + VE E Q + LLE
Sbjct: 61 QMNQKDFLSLIVSILRSWN----EPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLER 116
Query: 406 CSRIMAWLLPLESSNAFYP 424
I++ + P N YP
Sbjct: 117 MELIVSQVHPETKENEIYP 135
>pdb|3NCB|A Chain A, A Mutant Human Prolactin Receptor Antagonist H180a In
Complex With The Extracellular Domain Of The Human
Prolactin Receptor
Length = 186
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 348 EMSGFAFNSTILWDPKRWHRPTLEPIRQVVTVKDGFQAS--TFVEQIVEDESQMEGLLEE 405
+M+ F S I+ + W+ EP+ +VT G Q + + + VE E Q + LLE
Sbjct: 61 QMNQKDFLSLIVSILRSWN----EPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLER 116
Query: 406 CSRIMAWLLPLESSNAFYP 424
I++ + P N YP
Sbjct: 117 MELIVSQVHPETKENEIYP 135
>pdb|3N0P|A Chain A, A Mutant Human Prolactin Receptor Antagonist H30a In
Complex With The Extracellular Domain Of The Human
Prolactin Receptor
pdb|3NCF|A Chain A, A Mutant Human Prolactin Receptor Antagonist H30a In
Complex With The Mutant Extracellular Domain H188a Of
The Human Prolactin Receptor
Length = 186
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 348 EMSGFAFNSTILWDPKRWHRPTLEPIRQVVTVKDGFQAS--TFVEQIVEDESQMEGLLEE 405
+M+ F S I+ + W+ EP+ +VT G Q + + + VE E Q + LLE
Sbjct: 61 QMNQKDFLSLIVSILRSWN----EPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLER 116
Query: 406 CSRIMAWLLPLESSNAFYP 424
I++ + P N YP
Sbjct: 117 MELIVSQVHPETKENEIYP 135
>pdb|3N06|A Chain A, A Mutant Human Prolactin Receptor Antagonist H27a In
Complex With The Extracellular Domain Of The Human
Prolactin Receptor
pdb|3NCE|A Chain A, A Mutant Human Prolactin Receptor Antagonist H27a In
Complex With The Mutant Extracellular Domain H188a Of
The Human Prolactin Receptor
Length = 186
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 348 EMSGFAFNSTILWDPKRWHRPTLEPIRQVVTVKDGFQAS--TFVEQIVEDESQMEGLLEE 405
+M+ F S I+ + W+ EP+ +VT G Q + + + VE E Q + LLE
Sbjct: 61 QMNQKDFLSLIVSILRSWN----EPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLER 116
Query: 406 CSRIMAWLLPLESSNAFYP 424
I++ + P N YP
Sbjct: 117 MELIVSQVHPETKENEIYP 135
>pdb|3BJC|A Chain A, Crystal Structure Of The Pde5a Catalytic Domain In Complex
With A Novel Inhibitor
Length = 878
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 18/173 (10%)
Query: 249 CKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLT------DLFEELRQIRR 302
C + L VKD H AL H H+ G++ AD +++L D F R
Sbjct: 152 CSRLLELVKDISSHLDVTALCHKIFLHIHGLIS-ADRYSLFLVCEDSSNDKFLISRLFDV 210
Query: 303 FGTWTVGKLSENKMDTILEGPICNGTRVIGWHVNEPRERFR--RFHAE---MSGFAFNST 357
T+ ++S N + I +G +N ++ + RF+AE ++G+ S
Sbjct: 211 AEGSTLEEVSNNCIRLEWNKGIVGHVAALGEPLN-IKDAYEDPRFNAEVDQITGYKTQS- 268
Query: 358 ILWDPKRWHRPTLEPIRQVVTVKDGFQASTFVEQIVEDESQMEGLLEECSRIM 410
IL P + HR + + Q + K G TF E+ DE L C ++
Sbjct: 269 ILCMPIKNHREEVVGVAQAINKKSG-NGGTFTEK---DEKDFAAYLAFCGIVL 317
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 152 ATLESQAEIRELRDVLSD--DYSDNQSLPQDSDLVSRKLIIIVTPTDAQPFQAYYLNRLA 209
ATL+ A+ E++++L++ + SD + +D+ L RK ++T +Q + + L
Sbjct: 25 ATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVRKPSFLITNPGSQQGPRFAGSPLG 84
Query: 210 HTLRMVQPPLLW 221
H + LLW
Sbjct: 85 HEFTSLVLALLW 96
>pdb|1ZYN|A Chain A, Oxidized Structure Of The N-Terminal Domain Of Salmonella
Typhimurium Ahpf
pdb|1ZYN|B Chain B, Oxidized Structure Of The N-Terminal Domain Of Salmonella
Typhimurium Ahpf
pdb|1ZYP|A Chain A, Synchrotron Reduced Form Of The N-Terminal Domain Of
Salmonella Typhimurium Ahpf
pdb|1ZYP|B Chain B, Synchrotron Reduced Form Of The N-Terminal Domain Of
Salmonella Typhimurium Ahpf
Length = 202
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 152 ATLESQAEIRELRDVLSD--DYSDNQSLPQDSDLVSRKLIIIVTPTDAQPFQAYYLNRLA 209
ATL+ A+ E++++L++ + SD + +D+ L RK ++T +Q + + L
Sbjct: 25 ATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVRKPSFLITNPGSQQGPRFAGSPLG 84
Query: 210 HTLRMVQPPLLW 221
H + LLW
Sbjct: 85 HEFTSLVLALLW 96
>pdb|1RW5|A Chain A, Solution Structure Of Human Prolactin
pdb|3NPZ|A Chain A, Prolactin Receptor (Prlr) Complexed With The Natural
Hormone (Prl)
Length = 199
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 348 EMSGFAFNSTILWDPKRWHRPTLEPIRQVVTVKDGFQAS--TFVEQIVEDESQMEGLLEE 405
+M+ F S I+ + W+ EP+ +VT G Q + + + VE E Q + LLE
Sbjct: 74 QMNQKDFLSLIVSILRSWN----EPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEG 129
Query: 406 CSRIMAWLLPLESSNAFYP 424
I++ + P N YP
Sbjct: 130 MELIVSQVHPETKENEIYP 148
>pdb|3EW3|A Chain A, The 1:2 Complex Between A Nterminal Elongated Prolactin
And Cellular Domain Of The Rat Prolactin Receptor
Length = 203
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 348 EMSGFAFNSTILWDPKRWHRPTLEPIRQVVTVKDGFQAS--TFVEQIVEDESQMEGLLEE 405
+M+ F S I+ + W+ EP+ +VT G Q + + + VE E Q + LLE
Sbjct: 78 QMNQKDFLSLIVSILRSWN----EPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEG 133
Query: 406 CSRIMAWLLPLESSNAFYP 424
I++ + P N YP
Sbjct: 134 MELIVSQVHPETKENEIYP 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,135,703
Number of Sequences: 62578
Number of extensions: 469817
Number of successful extensions: 1038
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 18
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)