Query 013414
Match_columns 443
No_of_seqs 148 out of 268
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:36:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02458 transferase, transfer 100.0 4E-112 1E-116 842.4 28.4 331 70-420 2-342 (346)
2 cd00218 GlcAT-I Beta1,3-glucur 100.0 6.2E-96 1E-100 698.3 22.6 217 187-418 1-223 (223)
3 KOG1476 Beta-1,3-glucuronyltra 100.0 5E-89 1.1E-93 673.6 24.4 222 186-421 86-314 (330)
4 PF03360 Glyco_transf_43: Glyc 100.0 5.1E-81 1.1E-85 591.1 13.9 198 208-418 1-207 (207)
5 PF00535 Glycos_transf_2: Glyc 97.9 3.3E-05 7.2E-10 64.8 6.6 93 191-296 2-98 (169)
6 cd04184 GT2_RfbC_Mx_like Myxoc 96.6 0.02 4.3E-07 51.0 10.2 99 187-298 1-105 (202)
7 cd04185 GT_2_like_b Subfamily 96.6 0.023 4.9E-07 51.1 10.3 98 191-299 1-102 (202)
8 PLN02726 dolichyl-phosphate be 96.5 0.017 3.6E-07 54.5 9.2 103 185-298 7-115 (243)
9 cd06421 CESA_CelA_like CESA_Ce 96.3 0.039 8.4E-07 50.2 10.2 102 187-299 1-107 (234)
10 cd02522 GT_2_like_a GT_2_like_ 96.1 0.044 9.5E-07 49.6 9.6 91 190-297 2-93 (221)
11 cd06433 GT_2_WfgS_like WfgS an 96.0 0.045 9.7E-07 47.8 8.7 92 191-296 2-95 (202)
12 cd06423 CESA_like CESA_like is 95.9 0.089 1.9E-06 43.7 10.0 94 191-297 1-99 (180)
13 PRK10018 putative glycosyl tra 95.9 0.11 2.5E-06 51.6 12.2 100 185-296 3-105 (279)
14 COG0463 WcaA Glycosyltransfera 95.8 0.052 1.1E-06 44.1 7.9 95 186-296 2-102 (291)
15 cd02511 Beta4Glucosyltransfera 95.8 0.047 1E-06 51.2 8.7 94 189-300 2-95 (229)
16 cd04195 GT2_AmsE_like GT2_AmsE 95.8 0.11 2.4E-06 46.3 10.7 96 191-297 2-101 (201)
17 cd06435 CESA_NdvC_like NdvC_li 95.7 0.12 2.6E-06 47.6 10.8 100 191-298 2-106 (236)
18 cd04196 GT_2_like_d Subfamily 95.6 0.074 1.6E-06 47.5 8.8 97 191-300 2-103 (214)
19 PRK10063 putative glycosyl tra 95.5 0.085 1.8E-06 51.0 9.6 102 187-300 1-106 (248)
20 cd04187 DPM1_like_bac Bacteria 95.5 0.15 3.2E-06 45.2 10.2 100 191-299 1-103 (181)
21 cd04186 GT_2_like_c Subfamily 95.4 0.12 2.7E-06 43.7 9.1 96 191-299 1-97 (166)
22 cd04192 GT_2_like_e Subfamily 95.4 0.13 2.9E-06 46.3 9.7 98 191-299 1-105 (229)
23 cd00761 Glyco_tranf_GTA_type G 95.1 0.27 5.8E-06 39.9 9.8 95 191-297 1-98 (156)
24 cd06436 GlcNAc-1-P_transferase 95.1 0.16 3.4E-06 46.3 9.4 103 191-299 1-112 (191)
25 cd02525 Succinoglycan_BP_ExoA 95.1 0.23 5E-06 45.4 10.3 97 189-298 2-103 (249)
26 cd06434 GT2_HAS Hyaluronan syn 94.7 0.47 1E-05 43.4 11.4 96 189-299 2-100 (235)
27 cd06442 DPM1_like DPM1_like re 94.7 0.13 2.9E-06 46.6 7.6 96 191-299 1-101 (224)
28 cd06439 CESA_like_1 CESA_like_ 94.5 0.65 1.4E-05 43.2 11.9 105 182-298 24-131 (251)
29 cd06427 CESA_like_2 CESA_like_ 94.4 0.63 1.4E-05 43.6 11.8 100 187-297 1-105 (241)
30 cd02520 Glucosylceramide_synth 94.1 0.28 6E-06 44.6 8.5 103 187-299 1-109 (196)
31 PRK10073 putative glycosyl tra 94.1 0.41 8.9E-06 48.4 10.5 100 186-299 5-108 (328)
32 cd06438 EpsO_like EpsO protein 93.6 0.87 1.9E-05 40.7 10.6 99 191-298 1-103 (183)
33 cd06913 beta3GnTL1_like Beta 1 93.5 0.51 1.1E-05 43.3 9.1 94 191-296 1-104 (219)
34 cd02526 GT2_RfbF_like RfbF is 93.2 0.44 9.5E-06 43.7 8.1 93 191-297 1-96 (237)
35 cd06437 CESA_CaSu_A2 Cellulose 93.2 1.1 2.4E-05 41.4 10.8 102 187-299 1-110 (232)
36 PRK10714 undecaprenyl phosphat 93.0 1.5 3.2E-05 44.4 12.3 103 186-298 5-112 (325)
37 TIGR03469 HonB hopene-associat 92.9 1.2 2.5E-05 45.8 11.6 109 185-297 38-154 (384)
38 cd06420 GT2_Chondriotin_Pol_N 92.3 1.6 3.4E-05 38.3 10.1 97 191-299 1-102 (182)
39 TIGR01556 rhamnosyltran L-rham 92.2 0.91 2E-05 43.6 9.2 72 218-298 21-95 (281)
40 cd04188 DPG_synthase DPG_synth 92.2 1.5 3.4E-05 39.9 10.3 101 191-300 1-106 (211)
41 cd04179 DPM_DPG-synthase_like 92.0 1.3 2.9E-05 38.7 9.3 96 191-299 1-102 (185)
42 PRK13915 putative glucosyl-3-p 91.8 1.6 3.5E-05 43.9 10.8 107 185-298 29-138 (306)
43 PTZ00260 dolichyl-phosphate be 91.4 7.2 0.00016 39.7 15.1 105 183-297 66-183 (333)
44 PRK11204 N-glycosyltransferase 90.6 2.1 4.6E-05 43.8 10.5 101 185-298 52-156 (420)
45 TIGR03111 glyc2_xrt_Gpos1 puta 90.1 1.7 3.6E-05 45.6 9.4 99 185-298 47-153 (439)
46 cd02510 pp-GalNAc-T pp-GalNAc- 89.0 3.8 8.2E-05 40.0 10.4 95 191-297 2-104 (299)
47 PF13641 Glyco_tranf_2_3: Glyc 87.2 3.2 7E-05 37.8 8.2 102 187-298 1-108 (228)
48 PRK14583 hmsR N-glycosyltransf 85.9 6.9 0.00015 41.0 10.8 97 185-297 73-176 (444)
49 PF10111 Glyco_tranf_2_2: Glyc 84.3 8 0.00017 38.0 9.8 99 191-299 2-111 (281)
50 TIGR03030 CelA cellulose synth 75.1 31 0.00067 39.0 11.8 100 185-296 129-248 (713)
51 TIGR03472 HpnI hopanoid biosyn 74.7 17 0.00038 37.1 9.0 104 185-298 39-148 (373)
52 PF05679 CHGN: Chondroitin N-a 53.2 91 0.002 34.0 9.8 217 184-422 244-478 (499)
53 KOG0474 Cl- channel CLC-7 and 52.3 5 0.00011 45.3 0.2 38 69-106 68-105 (762)
54 PRK11498 bcsA cellulose syntha 50.5 2.1E+02 0.0045 33.7 12.6 100 185-296 258-359 (852)
55 PF06858 NOG1: Nucleolar GTP-b 49.9 13 0.00029 29.7 2.2 32 264-299 6-43 (58)
56 KOG1490 GTP-binding protein CR 42.9 25 0.00053 39.2 3.6 42 254-299 223-277 (620)
57 PF05194 UreE_C: UreE urease a 42.7 82 0.0018 26.2 6.0 53 188-250 3-61 (87)
58 cd00571 UreE UreE urease acces 42.6 85 0.0018 28.4 6.5 53 187-249 76-134 (136)
59 COG1216 Predicted glycosyltran 40.5 1.9E+02 0.0042 28.6 9.2 104 186-299 2-107 (305)
60 PF14773 VIGSSK: Helicase-asso 40.0 19 0.00042 29.2 1.7 22 229-250 24-45 (61)
61 PRK10187 trehalose-6-phosphate 39.6 42 0.0009 33.1 4.4 37 263-301 174-213 (266)
62 PF14263 DUF4354: Domain of un 36.3 13 0.00029 33.9 0.3 19 275-293 99-118 (124)
63 PRK13397 3-deoxy-7-phosphohept 34.9 41 0.00089 33.9 3.5 72 223-296 24-97 (250)
64 PF06295 DUF1043: Protein of u 34.1 20 0.00043 32.2 1.1 14 90-103 3-16 (128)
65 PRK13398 3-deoxy-7-phosphohept 34.0 53 0.0011 33.0 4.2 73 223-297 36-110 (266)
66 cd00532 MGS-like MGS-like doma 33.7 67 0.0014 27.6 4.2 69 202-287 11-80 (112)
67 PF05116 S6PP: Sucrose-6F-phos 33.2 56 0.0012 31.9 4.1 74 219-295 120-198 (247)
68 PRK05799 coproporphyrinogen II 32.1 3.3E+02 0.0071 28.0 9.6 125 186-313 52-193 (374)
69 PRK05628 coproporphyrinogen II 30.8 2.8E+02 0.0061 28.6 8.9 92 185-277 59-159 (375)
70 PRK08208 coproporphyrinogen II 29.5 3E+02 0.0064 29.2 9.0 92 187-278 93-193 (430)
71 KOG2978 Dolichol-phosphate man 28.6 4.5E+02 0.0097 26.4 9.2 125 191-336 7-138 (238)
72 PF13334 DUF4094: Domain of un 27.0 48 0.001 28.7 2.2 17 83-99 3-19 (95)
73 cd02514 GT13_GLCNAC-TI GT13_GL 26.6 6.2E+02 0.013 26.5 10.6 106 191-300 4-121 (334)
74 PRK08446 coproporphyrinogen II 26.3 5.1E+02 0.011 26.6 9.8 90 185-277 51-149 (350)
75 PF08534 Redoxin: Redoxin; In 26.2 1.7E+02 0.0037 25.2 5.5 64 182-248 25-91 (146)
76 COG3763 Uncharacterized protei 25.7 44 0.00096 27.9 1.6 17 86-102 7-23 (71)
77 TIGR02471 sucr_syn_bact_C sucr 25.7 1.2E+02 0.0025 28.7 4.8 32 263-296 159-193 (236)
78 PF06305 DUF1049: Protein of u 25.2 39 0.00084 26.2 1.2 25 85-109 20-44 (68)
79 PF02390 Methyltransf_4: Putat 25.1 87 0.0019 29.7 3.8 105 187-299 42-148 (195)
80 PRK08207 coproporphyrinogen II 23.9 5.7E+02 0.012 28.0 10.1 91 186-277 219-320 (488)
81 cd01424 MGS_CPS_II Methylglyox 23.5 1.9E+02 0.0042 24.4 5.2 69 201-287 11-79 (110)
82 cd02968 SCO SCO (an acronym fo 23.2 3E+02 0.0064 23.4 6.4 64 184-249 21-93 (142)
83 PF11688 DUF3285: Protein of u 23.0 46 0.00099 25.5 1.1 20 84-103 21-42 (45)
84 PF03672 UPF0154: Uncharacteri 22.4 44 0.00096 27.3 1.1 14 89-102 3-16 (64)
85 PF11316 Rhamno_transf: Putati 22.2 4.5E+02 0.0096 26.1 8.2 78 216-301 56-139 (234)
86 PF00583 Acetyltransf_1: Acety 21.9 1.1E+02 0.0025 23.1 3.3 36 262-297 45-80 (83)
87 PRK11677 hypothetical protein; 21.9 44 0.00095 30.8 1.1 13 90-102 7-19 (134)
88 PRK14716 bacteriophage N4 adso 21.8 6.1E+02 0.013 28.0 9.8 107 185-297 64-179 (504)
89 PF12072 DUF3552: Domain of un 21.4 54 0.0012 31.4 1.6 19 86-104 3-21 (201)
90 PRK08599 coproporphyrinogen II 20.7 5.3E+02 0.011 26.6 8.7 93 186-279 52-153 (377)
91 COG1395 Predicted transcriptio 20.7 1.4E+02 0.003 31.3 4.5 52 198-297 54-106 (313)
92 cd01462 VWA_YIEM_type VWA YIEM 20.3 2.4E+02 0.0053 24.5 5.4 37 276-312 95-134 (152)
No 1
>PLN02458 transferase, transferring glycosyl groups
Probab=100.00 E-value=4.4e-112 Score=842.35 Aligned_cols=331 Identities=41% Similarity=0.732 Sum_probs=274.8
Q ss_pred CccccCCccchhhHHhhhhHHHHHHHHHhhhcccCcccccchhhhhcccccchhhhccCCCCccc--cCc-cceeEeecC
Q 013414 70 RPLERARPKAQVWRRALFHFLICFVVGVFIGLTPFVSMNLSTNLMSKQQALTFEMVYAFGNSQTY--DGM-ARNVTVDND 146 (443)
Q Consensus 70 ~~~er~k~~~~~w~r~~~h~~lcF~~G~f~G~~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~--~~~-~~~~~~~~~ 146 (443)
+|.||+||+.||||||++||+||||||||+||+|.++++++|+..+.....+|.+.+. +|. .+. ..+.+..
T Consensus 2 ~~~~r~k~~~~lwkka~~h~slcfvmgfftgfap~~~~~~~s~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-- 75 (346)
T PLN02458 2 GSLERSKKKVQLWKKAVVHFSLCFVMGFFTGFAPAGKASFFSSHEAASNKSQFSPQPV----EMLHVATTPHHSNLNR-- 75 (346)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHhhhhhccCcCccchhhcccccccccccCCCCCc----ccccccCcccccccee--
Confidence 4789999999999999999999999999999999999999987653333334433321 110 001 1112111
Q ss_pred CccccccchhhHHhhhhhcccccc-ccc-CCCCCCCCCCCCcceEEEEccCCC-cchhhhhHHHHHhhhccCCCCceEEE
Q 013414 147 GIKNNATLESQAEIRELRDVLSDD-YSD-NQSLPQDSDLVSRKLIIIVTPTDA-QPFQAYYLNRLAHTLRMVQPPLLWIV 223 (443)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~lIivVTPTy~-R~~Q~a~LTRLahTL~lVpp~L~WIV 223 (443)
... ..+. +.|+++-..|. ... .....++.++.++|+||||||||. |++|+||||||||||+||||||||||
T Consensus 76 --~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlIivVTPTY~rR~~Q~a~LTRLahTL~lVp~pL~WIV 149 (346)
T PLN02458 76 --TLI-NAQT---PVPAPARSAESETASLLEKEEEEPKLAPRRLVIIVTPISTKDRYQGVLLRRLANTLRLVPPPLLWIV 149 (346)
T ss_pred --ccc-cccC---CCccChhhhhhhhhhhhhccccccCCCCCceEEEECCCCCCcchhHHHHHHHHHHHhcCCCCceEEE
Confidence 000 0000 01122222111 100 001124678899999999999998 79999999999999999998999999
Q ss_pred EecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhcccee
Q 013414 224 VEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQIRRF 303 (443)
Q Consensus 224 VEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ir~v 303 (443)
|||+..+++|++||++|||||+||+|+++++..+.++++|||+||+|||+|+++||||||||||+||++||||||+||+|
T Consensus 150 VEd~~~t~~va~lLrrsGl~y~HL~~k~~~~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR~ik~v 229 (346)
T PLN02458 150 VEGQSDSEEVSEMLRKTGIMYRHLVFKENFTDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIRDIEVF 229 (346)
T ss_pred EeCCCCCHHHHHHHHHcCCceEEeccCCCCCCccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHhcCcee
Confidence 99999999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred eeeEeeeecCCCccceeeceeecCCeEEEEEeCCC-CCCCCCCccccceeeeeeccccCCCCCCCCCCcccccccccCCC
Q 013414 304 GTWTVGKLSENKMDTILEGPICNGTRVIGWHVNEP-RERFRRFHAEMSGFAFNSTILWDPKRWHRPTLEPIRQVVTVKDG 382 (443)
Q Consensus 304 GvWPVGlvg~~~~k~~vEGPvc~~~kVvGW~t~~~-~~~~R~fpIDMAGFAfNs~lLwdp~~w~rP~~~~~~~~~~~k~G 382 (443)
|+||||++|++++++.||||+|++|||+|||+.|. ..+.|+|||||||||||++|||||++|+||++ +++|
T Consensus 230 G~WPVGlvg~~~~~~~vEGPvc~~gkVvGWht~w~~~~~~RrfpIDMAGFAfNs~lLwdP~rw~Rp~~--------~~~~ 301 (346)
T PLN02458 230 GTWPMALLSANRNKVIIEGPVCDSSQVIGWHLKKMNNETETRPPIHISSFAFNSSILWDPERWGRPSS--------VQGT 301 (346)
T ss_pred eecceEEeecccccceeECceecCCeEeEEeccccccCCCCCCCcceeeeeeehhhhcChhhhCCCCC--------CCcc
Confidence 99999999999999999999999999999999984 23679999999999999999999999999874 6889
Q ss_pred cchh-hHHHHh-ccCccceeecC-CCCCEEEEeeCCCCCCC
Q 013414 383 FQAS-TFVEQI-VEDESQMEGLL-EECSRIMAWLLPLESSN 420 (443)
Q Consensus 383 ~qEs-~FL~qL-v~d~~~lEpla-~~CskVLVWHtrte~p~ 420 (443)
+||| .||+|| ++|+.++||++ +||++|||||++++...
T Consensus 302 ~qeS~~Fv~ql~~~de~q~egipa~~CskVmvWhl~~~~~~ 342 (346)
T PLN02458 302 SQNSIKFVKQVALEDETKLKGIPPEDCSKIMLWRLNFPTRT 342 (346)
T ss_pred chHHHHHHHHHhhccccccccCCcCCCCEEEEEEeccCCcc
Confidence 9999 999999 58999999996 79999999999998753
No 2
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=100.00 E-value=6.2e-96 Score=698.28 Aligned_cols=217 Identities=47% Similarity=0.833 Sum_probs=208.4
Q ss_pred ceEEEEccCCCcchhhhhHHHHHhhhccCCCCceEEEEecCC-CCHHHHHHHHhcCCceeEeeecCC--CCCCCchhhhH
Q 013414 187 KLIIIVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTS-QSEETADVLRRTGVMYRHLVCKKN--LTDVKDTRVHQ 263 (443)
Q Consensus 187 ~lIivVTPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~-~s~~ta~lLrrsGl~y~HL~~~~~--~~~~~~rgv~Q 263 (443)
|+||||||||+|++|+||||||||||+||| |||||||||+. ++++|++||++|||||+||+++++ .++.++||++|
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~lVp-~l~WIVVEd~~~~t~~va~lL~~sgl~y~HL~~~~~~~~~~~~~rg~~q 79 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLRLVP-PLHWIVVEDSEEKTPLVAELLRRSGLMYTHLNAKTPSDPTWLKPRGVEQ 79 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHHhcCC-ceEEEEEeCCCCCCHHHHHHHHHcCCceEEeccCCCCCcccCCcccHHH
Confidence 689999999999999999999999999998 99999999998 899999999999999999999987 56789999999
Q ss_pred HHHHHHHHHhh---CCCeEEEEecCCCcccHHHHHHhhccceeeeeEeeeecCCCccceeeceeecCCeEEEEEeCCCCC
Q 013414 264 RNVALSHIENH---HLDGIVYFADENNIYLTDLFEELRQIRRFGTWTVGKLSENKMDTILEGPICNGTRVIGWHVNEPRE 340 (443)
Q Consensus 264 RN~AL~~Ir~h---~l~GVVYFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~k~~vEGPvc~~~kVvGW~t~~~~~ 340 (443)
||+||+|||+| +++||||||||||+||++||||||+||+||+||||++|+ +.||||+|++|||+|||+.|.
T Consensus 80 Rn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR~i~~vg~WPVglvg~----~~vegP~c~~gkV~gw~~~w~-- 153 (223)
T cd00218 80 RNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMRKIKRVGVWPVGLVGG----LRVEGPVCENGKVVGWHTAWK-- 153 (223)
T ss_pred HHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHhccCeeeEEEeeeecC----ceeeccEeeCCeEeEEecCCC--
Confidence 99999999999 999999999999999999999999999999999999999 789999999999999999987
Q ss_pred CCCCCccccceeeeeeccccCCCCCCCCCCcccccccccCCCcchhhHHHHhccCccceeecCCCCCEEEEeeCCCCC
Q 013414 341 RFRRFHAEMSGFAFNSTILWDPKRWHRPTLEPIRQVVTVKDGFQASTFVEQIVEDESQMEGLLEECSRIMAWLLPLES 418 (443)
Q Consensus 341 ~~R~fpIDMAGFAfNs~lLwdp~~w~rP~~~~~~~~~~~k~G~qEs~FL~qLv~d~~~lEpla~~CskVLVWHtrte~ 418 (443)
+.|+|||||||||||+++|||+++|.+|. .+++||||++||+||++|+++|||+|+||+|||||||+||+
T Consensus 154 ~~R~f~idmAGFA~n~~ll~~~~~~~~~~--------~~~~g~~es~fl~~L~~~~~~~Epl~~~c~~VlvWhtrte~ 223 (223)
T cd00218 154 PERPFPIDMAGFAFNSKLLWDPPRAVFPY--------SAKRGYQESSFLEQLVLDRKELEPLANNCSKVLVWHTRTEK 223 (223)
T ss_pred CCCCCcceeeeEEEehhhhccCccccCCC--------CCCCcchhHHhHHHHcccHHhcccccCCCCEEEEEeeecCC
Confidence 48999999999999999999999998764 26899999999999999999999999999999999999985
No 3
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-89 Score=673.61 Aligned_cols=222 Identities=41% Similarity=0.703 Sum_probs=210.0
Q ss_pred cceEEEEccCCCcchhhhhHHHHHhhhccCCCCceEEEEecC-CCCHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHH
Q 013414 186 RKLIIIVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMT-SQSEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQR 264 (443)
Q Consensus 186 ~~lIivVTPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~-~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QR 264 (443)
.|+||||||||.|++|+||||||||||+||| |||||||||+ ..+++|+++|++|||+|+||+++++++....||++||
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL~~V~-nLhWIVVEd~~~~~p~v~~~L~rtgl~ythl~~~t~~~~~~~rg~~qR 164 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTLRLVP-NLHWIVVEDGEGTTPEVSGILRRTGLPYTHLVHKTPMGYKARRGWEQR 164 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHHhhcC-CeeEEEEecCCCCCHHHHHHHHHcCCceEEEeccCCCCCccccchhHH
Confidence 8999999999999999999999999999998 9999999998 5799999999999999999999999988888999999
Q ss_pred HHHHHHHH-----hhCCCeEEEEecCCCcccHHHHHHhhccceeeeeEeeeecCCCccceeeceeecCCeEEEEEeCCCC
Q 013414 265 NVALSHIE-----NHHLDGIVYFADENNIYLTDLFEELRQIRRFGTWTVGKLSENKMDTILEGPICNGTRVIGWHVNEPR 339 (443)
Q Consensus 265 N~AL~~Ir-----~h~l~GVVYFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~k~~vEGPvc~~~kVvGW~t~~~~ 339 (443)
|+||+||| +|+++||||||||||+||++||+|||+||+|||||||++|| +.||||+|++|||+|||+.|.
T Consensus 165 n~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~eiR~v~~~gvWpVg~vgg----~~vE~P~v~~~kvvg~~~~w~- 239 (330)
T KOG1476|consen 165 NMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEEIRNVKKFGVWPVGLVGG----ARVEGPVVNNGKVVGWHTRWE- 239 (330)
T ss_pred HHHHHHHHHhcccccccceEEEEccCCcchhHHHHHHHhccceeeeEeeeecCC----eeeecceeccCeeEEEEeccc-
Confidence 99999999 78999999999999999999999999999999999999998 789999999999999999987
Q ss_pred CCCCCCccccceeeeeeccccC-CCCCCCCCCcccccccccCCCcchhhHHHHhccCccceeecCCCCCEEEEeeCCCCC
Q 013414 340 ERFRRFHAEMSGFAFNSTILWD-PKRWHRPTLEPIRQVVTVKDGFQASTFVEQIVEDESQMEGLLEECSRIMAWLLPLES 418 (443)
Q Consensus 340 ~~~R~fpIDMAGFAfNs~lLwd-p~~w~rP~~~~~~~~~~~k~G~qEs~FL~qLv~d~~~lEpla~~CskVLVWHtrte~ 418 (443)
+.|+|||||||||||+++||+ +++|.++. +..++||||++||+||+.|.++|||+|+||++||||||+||+
T Consensus 240 -~~r~f~vdmaGFAvNl~lll~~~~a~f~~~-------~~~~~G~~E~~~l~~l~~d~~~iEp~~~~c~kILvWhtrte~ 311 (330)
T KOG1476|consen 240 -PERPFAVDMAGFAVNLKLLLDPSNAVFKPL-------CPRGEGYQETCLLEQLGLDLSDIEPLAYECTKILVWHTRTEK 311 (330)
T ss_pred -cCCCCccchhhheehhhhhccCcccccccc-------CcCCCCCcchhHHHHhcCCHHHccccccccceEEEEEecccC
Confidence 589999999999999999999 44565533 456789999999999999999999999999999999999999
Q ss_pred CCC
Q 013414 419 SNA 421 (443)
Q Consensus 419 p~l 421 (443)
|..
T Consensus 312 ~~~ 314 (330)
T KOG1476|consen 312 PAD 314 (330)
T ss_pred ccc
Confidence 954
No 4
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=100.00 E-value=5.1e-81 Score=591.08 Aligned_cols=198 Identities=43% Similarity=0.772 Sum_probs=149.4
Q ss_pred HHhhhccCCCCceEEEEecCCC-CHHHHHHHHhcCCceeEeeecC-----CCCCCCchhhhHHHHHHHHHH---hhCCCe
Q 013414 208 LAHTLRMVQPPLLWIVVEMTSQ-SEETADVLRRTGVMYRHLVCKK-----NLTDVKDTRVHQRNVALSHIE---NHHLDG 278 (443)
Q Consensus 208 LahTL~lVpp~L~WIVVEd~~~-s~~ta~lLrrsGl~y~HL~~~~-----~~~~~~~rgv~QRN~AL~~Ir---~h~l~G 278 (443)
|||||+||| |||||||||++. ++.|++||++|||+|+||++++ +..+.++||++|||.||+||| +++++|
T Consensus 1 La~TL~~V~-~l~WIVVEd~~~~~~~v~~lL~~sgl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~G 79 (207)
T PF03360_consen 1 LAHTLRHVP-PLHWIVVEDSEETTPLVARLLRRSGLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDG 79 (207)
T ss_dssp HHHHHTTSS-SEEEEEEESSSS--HHHHHHHHHHTSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-E
T ss_pred CchhhhcCC-ceEEEEEeCCCCCCHHHHHHHHHcCCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCc
Confidence 799999998 999999999886 5669999999999999999997 345678999999999999999 889999
Q ss_pred EEEEecCCCcccHHHHHHhhccceeeeeEeeeecCCCccceeeceeecCCeEEEEEeCCCCCCCCCCccccceeeeeecc
Q 013414 279 IVYFADENNIYLTDLFEELRQIRRFGTWTVGKLSENKMDTILEGPICNGTRVIGWHVNEPRERFRRFHAEMSGFAFNSTI 358 (443)
Q Consensus 279 VVYFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~k~~vEGPvc~~~kVvGW~t~~~~~~~R~fpIDMAGFAfNs~l 358 (443)
||||||||||||+|||||||+||+|||||||++|+ +.+|||+|++++|+|||+.|. +.|+|||||||||||++|
T Consensus 80 VVyFaDDdNtYdl~LF~emR~~k~vgvWPVG~vg~----~~~EgP~~~~~~Vvgw~~~~~--~~R~fpiDmAGFAvn~~l 153 (207)
T PF03360_consen 80 VVYFADDDNTYDLRLFDEMRKTKRVGVWPVGLVGG----LRVEGPVCNNGKVVGWHTSWK--PDRPFPIDMAGFAVNSRL 153 (207)
T ss_dssp EEEE--TTSEE-HHHHHHHCT-SSEEE--EEEETT----EEEEEEEEETTEEEEEE-SSS--TTSTT---GGGEEEEHHH
T ss_pred EEEECCCCCeeeHHHHHHHHhhhcccceeeceecc----ceeeccEEeCCEEEEEEcccC--CCCCccccceeeeeehHH
Confidence 99999999999999999999999999999999997 789999999999999999987 579999999999999999
Q ss_pred ccCCCCCCCCCCcccccccccCCCcchhhHHHHhccCccceeecCCCCCEEEEeeCCCCC
Q 013414 359 LWDPKRWHRPTLEPIRQVVTVKDGFQASTFVEQIVEDESQMEGLLEECSRIMAWLLPLES 418 (443)
Q Consensus 359 Lwdp~~w~rP~~~~~~~~~~~k~G~qEs~FL~qLv~d~~~lEpla~~CskVLVWHtrte~ 418 (443)
||++++|..+.. . ...+||||++||++|+.++++|||+|+||++|||||||||+
T Consensus 154 l~~~~~~~~~~~-----~-~~~~G~~Es~fL~~l~~~~~~lEp~a~~c~~VlVWHtrtek 207 (207)
T PF03360_consen 154 LWDRPEAIFDYS-----A-PRGEGYQESSFLSQLVLDREDLEPLADNCSKVLVWHTRTEK 207 (207)
T ss_dssp HHHSTT----TT-----S-STT-TGHHHHHHHTT---GGGEEE-HHHHTS--EE---B--
T ss_pred HhcCcccccccc-----C-CCCCCcchhHHHHHhccChhhcccccCCCCEEEEeeeeccC
Confidence 998666644221 1 11149999999999999999999999999999999999986
No 5
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=97.88 E-value=3.3e-05 Score=64.80 Aligned_cols=93 Identities=30% Similarity=0.418 Sum_probs=64.3
Q ss_pred EEccCCCcchhhhhHHHHHhhhccC-CCCceEEEEecCCCCHHHHHHHHhc---CCceeEeeecCCCCCCCchhhhHHHH
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLRMV-QPPLLWIVVEMTSQSEETADVLRRT---GVMYRHLVCKKNLTDVKDTRVHQRNV 266 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~lV-pp~L~WIVVEd~~~s~~ta~lLrrs---Gl~y~HL~~~~~~~~~~~rgv~QRN~ 266 (443)
||+|||.+ .-+|.++-++|+.- .++.-+|||.|+. ++.+.++|++. +..++.+..++|. ..-.++|.
T Consensus 2 vvip~~n~---~~~l~~~l~sl~~q~~~~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~n~-----g~~~~~n~ 72 (169)
T PF00535_consen 2 VVIPTYNE---AEYLERTLESLLKQTDPDFEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPENL-----GFSAARNR 72 (169)
T ss_dssp EEEEESS----TTTHHHHHHHHHHHSGCEEEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCCCS-----HHHHHHHH
T ss_pred EEEEeeCC---HHHHHHHHHHHhhccCCCEEEEEecccc-ccccccccccccccccccccccccccc-----cccccccc
Confidence 79999999 34555666655554 3479999999987 55556666654 6677777665431 34588999
Q ss_pred HHHHHHhhCCCeEEEEecCCCcccHHHHHH
Q 013414 267 ALSHIENHHLDGIVYFADENNIYLTDLFEE 296 (443)
Q Consensus 267 AL~~Ir~h~l~GVVYFADDDNtYdl~LFde 296 (443)
|+++.+.. .|.|.|||..+....+++
T Consensus 73 ~~~~a~~~----~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 73 GIKHAKGE----YILFLDDDDIISPDWLEE 98 (169)
T ss_dssp HHHH--SS----EEEEEETTEEE-TTHHHH
T ss_pred ccccccee----EEEEeCCCceEcHHHHHH
Confidence 99998765 999999999998876666
No 6
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.61 E-value=0.02 Score=51.03 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=61.3
Q ss_pred ceEEEEccCCCcc-hhhhhHHHHHhhhc-cCCCCceEEEEecCCCCHHHHHHHHh---cCCceeEeeecCCCCCCCchh-
Q 013414 187 KLIIIVTPTDAQP-FQAYYLNRLAHTLR-MVQPPLLWIVVEMTSQSEETADVLRR---TGVMYRHLVCKKNLTDVKDTR- 260 (443)
Q Consensus 187 ~lIivVTPTy~R~-~Q~a~LTRLahTL~-lVpp~L~WIVVEd~~~s~~ta~lLrr---sGl~y~HL~~~~~~~~~~~rg- 260 (443)
|.+.||.|||.+. .+. .+.-+.|. +..+++..|||+|++....+..+++. ..-..+.+..+ ...|
T Consensus 1 p~vsiii~~~n~~~~~l---~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~------~~~g~ 71 (202)
T cd04184 1 PLISIVMPVYNTPEKYL---REAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFRE------ENGGI 71 (202)
T ss_pred CeEEEEEecccCcHHHH---HHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcc------cCCCH
Confidence 4688999999998 332 22222222 22347899999998754444444442 11112222111 1233
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhh
Q 013414 261 VHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELR 298 (443)
Q Consensus 261 v~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR 298 (443)
...+|.|+++.+ .=.|.|.|+|..++.+.++++.
T Consensus 72 ~~a~n~g~~~a~----~d~i~~ld~D~~~~~~~l~~~~ 105 (202)
T cd04184 72 SAATNSALELAT----GEFVALLDHDDELAPHALYEVV 105 (202)
T ss_pred HHHHHHHHHhhc----CCEEEEECCCCcCChHHHHHHH
Confidence 377999998753 2478899999999999888854
No 7
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.56 E-value=0.023 Score=51.08 Aligned_cols=98 Identities=19% Similarity=0.106 Sum_probs=63.4
Q ss_pred EEccCCCcchhhhhHHHHHhhhcc-CCCCceEEEEecCCCCHHHHHHHHhcCCce--eEeeecCCCCCCCchh-hhHHHH
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLRM-VQPPLLWIVVEMTSQSEETADVLRRTGVMY--RHLVCKKNLTDVKDTR-VHQRNV 266 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~l-Vpp~L~WIVVEd~~~s~~ta~lLrrsGl~y--~HL~~~~~~~~~~~rg-v~QRN~ 266 (443)
||+|||.+..... ++-+.|.. ..++.-.|||+|+++ +.|.+++++.+-.+ +++..++| .| ...+|.
T Consensus 1 viI~~~n~~~~l~---~~l~sl~~q~~~~~eiiivD~~s~-d~t~~~~~~~~~~~~i~~~~~~~n------~g~~~~~n~ 70 (202)
T cd04185 1 AVVVTYNRLDLLK---ECLDALLAQTRPPDHIIVIDNAST-DGTAEWLTSLGDLDNIVYLRLPEN------LGGAGGFYE 70 (202)
T ss_pred CEEEeeCCHHHHH---HHHHHHHhccCCCceEEEEECCCC-cchHHHHHHhcCCCceEEEECccc------cchhhHHHH
Confidence 6889999875433 33233322 223577899998653 34556666655543 45544332 23 356899
Q ss_pred HHHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 267 ALSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 267 AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
|+++.. +...-.|.|.|+|..++.+.++++-+
T Consensus 71 ~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~ 102 (202)
T cd04185 71 GVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLA 102 (202)
T ss_pred HHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHH
Confidence 998886 33334788889999999999999664
No 8
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=96.46 E-value=0.017 Score=54.45 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=64.3
Q ss_pred CcceEEEEccCCCcchhhhhHH-HHHhhhccCCCCceEEEEecCCCCHHHHHHHHhc----CCceeEeeecCCCCCCCch
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLN-RLAHTLRMVQPPLLWIVVEMTSQSEETADVLRRT----GVMYRHLVCKKNLTDVKDT 259 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LT-RLahTL~lVpp~L~WIVVEd~~~s~~ta~lLrrs----Gl~y~HL~~~~~~~~~~~r 259 (443)
..|.|-||.|+|........+. .+.+.+...+ ++.+|||.|++. +.|.+++++. +....++... ....
T Consensus 7 ~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~-~~eiivvDdgS~-D~t~~i~~~~~~~~~~~~v~~~~~-----~~n~ 79 (243)
T PLN02726 7 GAMKYSIIVPTYNERLNIALIVYLIFKALQDVK-DFEIIVVDDGSP-DGTQDVVKQLQKVYGEDRILLRPR-----PGKL 79 (243)
T ss_pred CCceEEEEEccCCchhhHHHHHHHHHHHhccCC-CeEEEEEeCCCC-CCHHHHHHHHHHhcCCCcEEEEec-----CCCC
Confidence 4578999999999877655443 3445555444 789999999653 2334444432 2222222211 1122
Q ss_pred hh-hHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhh
Q 013414 260 RV-HQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELR 298 (443)
Q Consensus 260 gv-~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR 298 (443)
|. ..+|.|++..+ .-+|.|.|.|..++.+.+++|-
T Consensus 80 G~~~a~n~g~~~a~----g~~i~~lD~D~~~~~~~l~~l~ 115 (243)
T PLN02726 80 GLGTAYIHGLKHAS----GDFVVIMDADLSHHPKYLPSFI 115 (243)
T ss_pred CHHHHHHHHHHHcC----CCEEEEEcCCCCCCHHHHHHHH
Confidence 32 45788887642 3488999999999999888843
No 9
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=96.29 E-value=0.039 Score=50.23 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=64.7
Q ss_pred ceEEEEccCCCcchhhhhHHHHHhhhcc-CCCC--ceEEEEecCCCCHHHHHHHHhcCCce--eEeeecCCCCCCCchhh
Q 013414 187 KLIIIVTPTDAQPFQAYYLNRLAHTLRM-VQPP--LLWIVVEMTSQSEETADVLRRTGVMY--RHLVCKKNLTDVKDTRV 261 (443)
Q Consensus 187 ~lIivVTPTy~R~~Q~a~LTRLahTL~l-Vpp~--L~WIVVEd~~~s~~ta~lLrrsGl~y--~HL~~~~~~~~~~~rgv 261 (443)
|.|-||.|||.+.. ..|.+.-+.|.. --++ +..|||.|++ ++.+.+++++-+..+ ..+....+. .-..
T Consensus 1 p~vsviip~~n~~~--~~l~~~l~sl~~q~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~~~~~~~~----~~~~ 73 (234)
T cd06421 1 PTVDVFIPTYNEPL--EIVRKTLRAALAIDYPHDKLRVYVLDDGR-RPELRALAAELGVEYGYRYLTRPDNR----HAKA 73 (234)
T ss_pred CceEEEEecCCCcH--HHHHHHHHHHHhcCCCcccEEEEEEcCCC-chhHHHHHHHhhcccCceEEEeCCCC----CCcH
Confidence 46889999999742 123333333333 2234 7899998874 567888888776644 222222111 1123
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 262 HQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 262 ~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
.++|.|++.. ..=+|.|.|+|...+.+.+++|-+
T Consensus 74 ~~~n~~~~~a----~~d~i~~lD~D~~~~~~~l~~l~~ 107 (234)
T cd06421 74 GNLNNALAHT----TGDFVAILDADHVPTPDFLRRTLG 107 (234)
T ss_pred HHHHHHHHhC----CCCEEEEEccccCcCccHHHHHHH
Confidence 5689999875 234999999999999888888543
No 10
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.11 E-value=0.044 Score=49.56 Aligned_cols=91 Identities=21% Similarity=0.218 Sum_probs=60.2
Q ss_pred EEEccCCCcchhhhh-HHHHHhhhccCCCCceEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHH
Q 013414 190 IIVTPTDAQPFQAYY-LNRLAHTLRMVQPPLLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVAL 268 (443)
Q Consensus 190 ivVTPTy~R~~Q~a~-LTRLahTL~lVpp~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL 268 (443)
-||.|||.++....+ |..|.+ +..+++-.|||+|+. ++.+.+++++.+ .+++... .+ .-..+|.|+
T Consensus 2 svii~~~n~~~~l~~~l~sl~~---q~~~~~evivvdd~s-~d~~~~~~~~~~--~~~~~~~---~g----~~~a~n~g~ 68 (221)
T cd02522 2 SIIIPTLNEAENLPRLLASLRR---LNPLPLEIIVVDGGS-TDGTVAIARSAG--VVVISSP---KG----RARQMNAGA 68 (221)
T ss_pred EEEEEccCcHHHHHHHHHHHHh---ccCCCcEEEEEeCCC-CccHHHHHhcCC--eEEEeCC---cC----HHHHHHHHH
Confidence 488999998754332 333332 222468888998765 455667777633 3333221 11 236789999
Q ss_pred HHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 269 SHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 269 ~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
+..+ .-+|.|.|+|..++.+.+++|
T Consensus 69 ~~a~----~~~i~~~D~D~~~~~~~l~~l 93 (221)
T cd02522 69 AAAR----GDWLLFLHADTRLPPDWDAAI 93 (221)
T ss_pred Hhcc----CCEEEEEcCCCCCChhHHHHH
Confidence 8764 469999999999999999996
No 11
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.96 E-value=0.045 Score=47.82 Aligned_cols=92 Identities=17% Similarity=0.261 Sum_probs=54.0
Q ss_pred EEccCCCcchhhh-hHHHH-HhhhccCCCCceEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHH
Q 013414 191 IVTPTDAQPFQAY-YLNRL-AHTLRMVQPPLLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVAL 268 (443)
Q Consensus 191 vVTPTy~R~~Q~a-~LTRL-ahTL~lVpp~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL 268 (443)
||+|||.++.... -|..| +|+. +++..|||+|++. +.+.++|++-+-...++...++. .-...||.||
T Consensus 2 ivi~~~n~~~~l~~~l~sl~~q~~----~~~evivvDd~s~-d~~~~~~~~~~~~~~~~~~~~~~-----g~~~a~n~~~ 71 (202)
T cd06433 2 IITPTYNQAETLEETIDSVLSQTY----PNIEYIVIDGGST-DGTVDIIKKYEDKITYWISEPDK-----GIYDAMNKGI 71 (202)
T ss_pred EEEeccchHHHHHHHHHHHHhCCC----CCceEEEEeCCCC-ccHHHHHHHhHhhcEEEEecCCc-----CHHHHHHHHH
Confidence 7899999874322 23333 2332 3588999988653 23445554433322222222221 1247899999
Q ss_pred HHHHhhCCCeEEEEecCCCcccHHHHHH
Q 013414 269 SHIENHHLDGIVYFADENNIYLTDLFEE 296 (443)
Q Consensus 269 ~~Ir~h~l~GVVYFADDDNtYdl~LFde 296 (443)
++.+ .-+|.|.|+|..+..+...+
T Consensus 72 ~~a~----~~~v~~ld~D~~~~~~~~~~ 95 (202)
T cd06433 72 ALAT----GDIIGFLNSDDTLLPGALLA 95 (202)
T ss_pred HHcC----CCEEEEeCCCcccCchHHHH
Confidence 8763 24888999999887665555
No 12
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=95.94 E-value=0.089 Score=43.75 Aligned_cols=94 Identities=24% Similarity=0.321 Sum_probs=57.6
Q ss_pred EEccCCCcchhhhhHHHHHhhh-ccCCCCceEEEEecCCCCHHHHHHHHhcCCc----eeEeeecCCCCCCCchhhhHHH
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTL-RMVQPPLLWIVVEMTSQSEETADVLRRTGVM----YRHLVCKKNLTDVKDTRVHQRN 265 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL-~lVpp~L~WIVVEd~~~s~~ta~lLrrsGl~----y~HL~~~~~~~~~~~rgv~QRN 265 (443)
||-|||.++.+ |.++-+.| ++..++.--|||.|+.. +.+.+++++..-. ..++...++ ..-..+||
T Consensus 1 Viip~~n~~~~---l~~~l~sl~~q~~~~~~iivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~n 71 (180)
T cd06423 1 IIVPAYNEEAV---IERTIESLLALDYPKLEVIVVDDGST-DDTLEILEELAALYIRRVLVVRDKEN-----GGKAGALN 71 (180)
T ss_pred CeecccChHHH---HHHHHHHHHhCCCCceEEEEEeCCCc-cchHHHHHHHhccccceEEEEEeccc-----CCchHHHH
Confidence 57789999843 33322222 33324678888988654 3344444443332 222222211 11247899
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 266 VALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 266 ~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
.|+++. ..-+|.|.|+|..+....+++|
T Consensus 72 ~~~~~~----~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 72 AGLRHA----KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred HHHHhc----CCCEEEEECCCCCcChHHHHHH
Confidence 999887 3457899999999999999998
No 13
>PRK10018 putative glycosyl transferase; Provisional
Probab=95.90 E-value=0.11 Score=51.56 Aligned_cols=100 Identities=16% Similarity=0.085 Sum_probs=63.9
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhhhccCCCCceEEEEecCCCCH-HHHHHHHhcCC-ceeEeeecCCCCCCCchhh-
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTSQSE-ETADVLRRTGV-MYRHLVCKKNLTDVKDTRV- 261 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~~s~-~ta~lLrrsGl-~y~HL~~~~~~~~~~~rgv- 261 (443)
..|+|-||+|||.+..-.. .-|...+.+--+++-+|||.|++.+. .+.+++...+- ..+++..+ ...|.
T Consensus 3 ~~p~VSVIip~yN~~~~l~--~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~------~n~G~~ 74 (279)
T PRK10018 3 DNPLISIYMPTWNRQQLAI--RAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHND------INSGAC 74 (279)
T ss_pred CCCEEEEEEEeCCCHHHHH--HHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECC------CCCCHH
Confidence 4688999999999865322 11222333323479999999987653 34566654332 22222221 23454
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH
Q 013414 262 HQRNVALSHIENHHLDGIVYFADENNIYLTDLFEE 296 (443)
Q Consensus 262 ~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFde 296 (443)
..||.||+.. ..-.|.|.|+|..+..+.+++
T Consensus 75 ~a~N~gi~~a----~g~~I~~lDaDD~~~p~~l~~ 105 (279)
T PRK10018 75 AVRNQAIMLA----QGEYITGIDDDDEWTPNRLSV 105 (279)
T ss_pred HHHHHHHHHc----CCCEEEEECCCCCCCccHHHH
Confidence 5699999864 334899999999998887665
No 14
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.83 E-value=0.052 Score=44.08 Aligned_cols=95 Identities=20% Similarity=0.175 Sum_probs=55.9
Q ss_pred cceEEEEccCCCcchhhhhHHHHHhhhccCC----CCceEEEEecCCC--CHHHHHHHHhcCCceeEeeecCCCCCCCch
Q 013414 186 RKLIIIVTPTDAQPFQAYYLNRLAHTLRMVQ----PPLLWIVVEMTSQ--SEETADVLRRTGVMYRHLVCKKNLTDVKDT 259 (443)
Q Consensus 186 ~~lIivVTPTy~R~~Q~a~LTRLahTL~lVp----p~L~WIVVEd~~~--s~~ta~lLrrsGl~y~HL~~~~~~~~~~~r 259 (443)
.+.|=||.|||.+. ..|.++|..+. .+.-.|||+|+++ +.++++-+........+...+.| ..
T Consensus 2 ~~~~siiip~~n~~------~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~~-----~g 70 (291)
T COG0463 2 MPKVSVVIPTYNEE------EYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKDVRVIRLINERN-----GG 70 (291)
T ss_pred CccEEEEEeccchh------hhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhcceEEEeecccC-----CC
Confidence 57788999999998 22333333332 2356888888653 44544433333222223322222 12
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH
Q 013414 260 RVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEE 296 (443)
Q Consensus 260 gv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFde 296 (443)
....||.++.+... -.|.|.|+|+. ....+..
T Consensus 71 ~~~~~~~~~~~~~~----~~~~~~d~d~~-~~~~~~~ 102 (291)
T COG0463 71 LGAARNAGLEYARG----DYIVFLDADDQ-HPPELIP 102 (291)
T ss_pred hHHHHHhhHHhccC----CEEEEEccCCC-CCHHHHH
Confidence 24779999988765 57788888888 6665555
No 15
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=95.82 E-value=0.047 Score=51.24 Aligned_cols=94 Identities=22% Similarity=0.212 Sum_probs=63.9
Q ss_pred EEEEccCCCcchhhhhHHHHHhhhccCCCCceEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHH
Q 013414 189 IIIVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVAL 268 (443)
Q Consensus 189 IivVTPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL 268 (443)
|-||.|||.... .|.+.-+.|.... -.-|||.|+++ +.|.+++++.|+...|. .+ .---.|||.|+
T Consensus 2 isvii~~~Ne~~---~l~~~l~sl~~~~--~eiivvD~gSt-D~t~~i~~~~~~~v~~~---~~-----~g~~~~~n~~~ 67 (229)
T cd02511 2 LSVVIITKNEER---NIERCLESVKWAV--DEIIVVDSGST-DRTVEIAKEYGAKVYQR---WW-----DGFGAQRNFAL 67 (229)
T ss_pred EEEEEEeCCcHH---HHHHHHHHHhccc--CEEEEEeCCCC-ccHHHHHHHcCCEEEEC---CC-----CChHHHHHHHH
Confidence 678999999753 2333333333221 36677877543 45778888888876665 11 11238899999
Q ss_pred HHHHhhCCCeEEEEecCCCcccHHHHHHhhcc
Q 013414 269 SHIENHHLDGIVYFADENNIYLTDLFEELRQI 300 (443)
Q Consensus 269 ~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~i 300 (443)
...+. + .|.|.|.|..++.++.++|.+.
T Consensus 68 ~~a~~---d-~vl~lDaD~~~~~~~~~~l~~~ 95 (229)
T cd02511 68 ELATN---D-WVLSLDADERLTPELADEILAL 95 (229)
T ss_pred HhCCC---C-EEEEEeCCcCcCHHHHHHHHHH
Confidence 87543 2 8999999999999999997653
No 16
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=95.79 E-value=0.11 Score=46.32 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=61.2
Q ss_pred EEccCCCcchhhhhHHHHHhhhcc-CCCCceEEEEecCCCCHHHHHHHHhcC--CceeEeeecCCCCCCCchh-hhHHHH
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLRM-VQPPLLWIVVEMTSQSEETADVLRRTG--VMYRHLVCKKNLTDVKDTR-VHQRNV 266 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~l-Vpp~L~WIVVEd~~~s~~ta~lLrrsG--l~y~HL~~~~~~~~~~~rg-v~QRN~ 266 (443)
||.|||.+.. ...|.+.-+.|.. .-++.-+|||.|+..++.+.++++..- .+.+++..++| .| ...||.
T Consensus 2 viip~~n~~~-~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n------~G~~~a~N~ 74 (201)
T cd04195 2 VLMSVYIKEK-PEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKN------RGLGKALNE 74 (201)
T ss_pred EEEEccccch-HHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCcc------ccHHHHHHH
Confidence 6889998752 2234444444433 213577899999877777766665431 22445543332 23 467999
Q ss_pred HHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 267 ALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 267 AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
|++.. ..-.|.|.|+|..+....+++|
T Consensus 75 g~~~a----~gd~i~~lD~Dd~~~~~~l~~~ 101 (201)
T cd04195 75 GLKHC----TYDWVARMDTDDISLPDRFEKQ 101 (201)
T ss_pred HHHhc----CCCEEEEeCCccccCcHHHHHH
Confidence 99864 2348999999999998888774
No 17
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=95.70 E-value=0.12 Score=47.60 Aligned_cols=100 Identities=16% Similarity=0.202 Sum_probs=64.7
Q ss_pred EEccCCCcchhhhhHHHHHhhhccCC-CCceEEEEecCCCC----HHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHH
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLRMVQ-PPLLWIVVEMTSQS----EETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRN 265 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~lVp-p~L~WIVVEd~~~s----~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN 265 (443)
||.|||.... ..|.++-.+|.... +++-.|||.|+.+. ..+.+++++.+..++.+....+. .. ....+|
T Consensus 2 iiip~~ne~~--~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~-G~---~~~a~n 75 (236)
T cd06435 2 IHVPCYEEPP--EMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLP-GA---KAGALN 75 (236)
T ss_pred eeEeeCCCcH--HHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCC-CC---chHHHH
Confidence 7899999862 23444444444432 36778999986542 23567777777666555433221 11 246799
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcccHHHHHHhh
Q 013414 266 VALSHIENHHLDGIVYFADENNIYLTDLFEELR 298 (443)
Q Consensus 266 ~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR 298 (443)
.|++..... .-+|.|.|+|..++.+.+++|-
T Consensus 76 ~g~~~a~~~--~d~i~~lD~D~~~~~~~l~~l~ 106 (236)
T cd06435 76 YALERTAPD--AEIIAVIDADYQVEPDWLKRLV 106 (236)
T ss_pred HHHHhcCCC--CCEEEEEcCCCCcCHHHHHHHH
Confidence 999986421 2389999999999999988863
No 18
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.62 E-value=0.074 Score=47.45 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=56.3
Q ss_pred EEccCCCcchhhhhHHHHHhhhc-cCCCCceEEEEecCCCCHHHHHHHHhcCCce----eEeeecCCCCCCCchhhhHHH
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLR-MVQPPLLWIVVEMTSQSEETADVLRRTGVMY----RHLVCKKNLTDVKDTRVHQRN 265 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~-lVpp~L~WIVVEd~~~s~~ta~lLrrsGl~y----~HL~~~~~~~~~~~rgv~QRN 265 (443)
||.|||.+.... .+.-+.|. +-.+++-+|||+|+++- .|.+++++..-.+ +++....+ .-....+|
T Consensus 2 IvIp~yn~~~~l---~~~l~sl~~q~~~~~eiiVvddgS~d-~t~~~~~~~~~~~~~~~~~~~~~~~-----~G~~~~~n 72 (214)
T cd04196 2 VLMATYNGEKYL---REQLDSILAQTYKNDELIISDDGSTD-GTVEIIKEYIDKDPFIIILIRNGKN-----LGVARNFE 72 (214)
T ss_pred EEEEecCcHHHH---HHHHHHHHhCcCCCeEEEEEeCCCCC-CcHHHHHHHHhcCCceEEEEeCCCC-----ccHHHHHH
Confidence 789999998443 23222222 22247999999997642 3444444443332 22211111 11236677
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhcc
Q 013414 266 VALSHIENHHLDGIVYFADENNIYLTDLFEELRQI 300 (443)
Q Consensus 266 ~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~i 300 (443)
.|+... ..=+|.|.|+|..++.+.+++|-+.
T Consensus 73 ~g~~~~----~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 73 SLLQAA----DGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred HHHHhC----CCCEEEEECCCcccChhHHHHHHHH
Confidence 775542 2347889999999999888876553
No 19
>PRK10063 putative glycosyl transferase; Provisional
Probab=95.55 E-value=0.085 Score=51.03 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=59.3
Q ss_pred ceEEEEccCCCcchhhhh-HHHHHhhhccCCCCceEEEEecCCCCHHHHHHHHhcCC--ceeEeeecCCCCCCCchhh-h
Q 013414 187 KLIIIVTPTDAQPFQAYY-LNRLAHTLRMVQPPLLWIVVEMTSQSEETADVLRRTGV--MYRHLVCKKNLTDVKDTRV-H 262 (443)
Q Consensus 187 ~lIivVTPTy~R~~Q~a~-LTRLahTL~lVpp~L~WIVVEd~~~s~~ta~lLrrsGl--~y~HL~~~~~~~~~~~rgv-~ 262 (443)
|+|-||+|||.......+ |..+.+....-.+++-+|||+|++ ++.|.+++++.+- ..+++. .+ ..|. .
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgS-tD~t~~i~~~~~~~~~i~~i~-~~------~~G~~~ 72 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGS-NDGTREFLENLNGIFNLRFVS-EP------DNGIYD 72 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcC-cccHHHHHHHhcccCCEEEEE-CC------CCCHHH
Confidence 468899999987554322 223322222222368899999976 3446667776542 223332 11 1233 5
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhcc
Q 013414 263 QRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQI 300 (443)
Q Consensus 263 QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~i 300 (443)
.+|.||+..+ .=+|.|.|.|..+..+.++.+++.
T Consensus 73 A~N~Gi~~a~----g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 73 AMNKGIAMAQ----GRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred HHHHHHHHcC----CCEEEEEeCCcccCcCHHHHHHHH
Confidence 7999998742 238889997777655554444443
No 20
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=95.51 E-value=0.15 Score=45.20 Aligned_cols=100 Identities=18% Similarity=0.105 Sum_probs=61.5
Q ss_pred EEccCCCcchhhhh-HHHHHhhhccCCCCceEEEEecCCC--CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHH
Q 013414 191 IVTPTDAQPFQAYY-LNRLAHTLRMVQPPLLWIVVEMTSQ--SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVA 267 (443)
Q Consensus 191 vVTPTy~R~~Q~a~-LTRLahTL~lVpp~L~WIVVEd~~~--s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~A 267 (443)
||.|||.+..+... |..|...+.+...++.=|||.|++. +.++++-+....-..+.+..++|. .....+|.|
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~n~-----G~~~a~n~g 75 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRNF-----GQQAALLAG 75 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecCCC-----CcHHHHHHH
Confidence 58899999877654 3345554544334567677877543 333433333222234444443321 123667888
Q ss_pred HHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 268 LSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 268 L~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
+++.. .-+|.|.|+|..++.+..++|-+
T Consensus 76 ~~~a~----~d~i~~~D~D~~~~~~~l~~l~~ 103 (181)
T cd04187 76 LDHAR----GDAVITMDADLQDPPELIPEMLA 103 (181)
T ss_pred HHhcC----CCEEEEEeCCCCCCHHHHHHHHH
Confidence 88753 35888999999999998888654
No 21
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.41 E-value=0.12 Score=43.70 Aligned_cols=96 Identities=18% Similarity=0.129 Sum_probs=60.1
Q ss_pred EEccCCCcchhhhhHHHHHhhhccCC-CCceEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHH
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLRMVQ-PPLLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALS 269 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~lVp-p~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~ 269 (443)
||.|||.|+ ..|.++-+.|.... ++..-|||.|+... .+.+.+++..-..+.+..+++ ......||.|++
T Consensus 1 vii~~~~~~---~~l~~~l~sl~~~~~~~~~iiivdd~s~~-~~~~~~~~~~~~~~~~~~~~~-----~g~~~a~n~~~~ 71 (166)
T cd04186 1 IIIVNYNSL---EYLKACLDSLLAQTYPDFEVIVVDNASTD-GSVELLRELFPEVRLIRNGEN-----LGFGAGNNQGIR 71 (166)
T ss_pred CEEEecCCH---HHHHHHHHHHHhccCCCeEEEEEECCCCc-hHHHHHHHhCCCeEEEecCCC-----cChHHHhhHHHh
Confidence 578999884 23445555554432 36777888886643 344445544322222222111 122478999999
Q ss_pred HHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 270 HIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 270 ~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
+. ...+|.|.|||..++.+.+++|-+
T Consensus 72 ~~----~~~~i~~~D~D~~~~~~~l~~~~~ 97 (166)
T cd04186 72 EA----KGDYVLLLNPDTVVEPGALLELLD 97 (166)
T ss_pred hC----CCCEEEEECCCcEECccHHHHHHH
Confidence 87 456899999999999998888654
No 22
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.40 E-value=0.13 Score=46.33 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=58.5
Q ss_pred EEccCCCcchhhhhHHHHHhhh-ccCCCC--ceEEEEecCCC--CHHHHH-HHHhcCCceeEeeecCCCCCCCchh-hhH
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTL-RMVQPP--LLWIVVEMTSQ--SEETAD-VLRRTGVMYRHLVCKKNLTDVKDTR-VHQ 263 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL-~lVpp~--L~WIVVEd~~~--s~~ta~-lLrrsGl~y~HL~~~~~~~~~~~rg-v~Q 263 (443)
||.|||.+..... +.-+.| .+--++ +..|||.|++. +.++.+ .+...+..++++..+. ....| ...
T Consensus 1 viip~~n~~~~l~---~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~----~~~~g~~~a 73 (229)
T cd04192 1 VVIAARNEAENLP---RLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSR----VSISGKKNA 73 (229)
T ss_pred CEEEecCcHHHHH---HHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccC----cccchhHHH
Confidence 6889999864432 222222 222234 78899988643 333333 3334455666664432 11122 244
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 264 RNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 264 RN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
+|.|+... ..-+|.|.|+|..++.+.+++|-.
T Consensus 74 ~n~g~~~~----~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 74 LTTAIKAA----KGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred HHHHHHHh----cCCEEEEECCCcccCHHHHHHHHH
Confidence 66666543 456999999999999999999664
No 23
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.11 E-value=0.27 Score=39.88 Aligned_cols=95 Identities=20% Similarity=0.265 Sum_probs=55.0
Q ss_pred EEccCCCcchhhhhHHHHHhhhccCC-CCceEEEEecCCCCHHHHHHHHhcC--CceeEeeecCCCCCCCchhhhHHHHH
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLRMVQ-PPLLWIVVEMTSQSEETADVLRRTG--VMYRHLVCKKNLTDVKDTRVHQRNVA 267 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~lVp-p~L~WIVVEd~~~s~~ta~lLrrsG--l~y~HL~~~~~~~~~~~rgv~QRN~A 267 (443)
||.|+|.+. ..|......+..-. ++..++|+.++........+.+... .....+.... .......+|.|
T Consensus 1 iii~~~~~~---~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~ 72 (156)
T cd00761 1 VIIPAYNEE---PYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEE-----NQGLAAARNAG 72 (156)
T ss_pred CEEeecCcH---HHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecC-----CCChHHHHHHH
Confidence 477888883 33333333333322 3678888888754322222222221 1222221111 12234778999
Q ss_pred HHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 268 LSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 268 L~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
+.++ ...+|.|.|+|+.++.+.++.+
T Consensus 73 ~~~~----~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 73 LKAA----RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred HHHh----cCCEEEEECCCCccCccHHHHH
Confidence 9887 4678999999999999998875
No 24
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=95.10 E-value=0.16 Score=46.25 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=60.5
Q ss_pred EEccCCCcchhhhhHHHHHhhhccCCCCceEEEEecCCCCHHHHHHHH-hcCCceeEeeecCCCCCCCchh-hhHHHHHH
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTSQSEETADVLR-RTGVMYRHLVCKKNLTDVKDTR-VHQRNVAL 268 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~~s~~ta~lLr-rsGl~y~HL~~~~~~~~~~~rg-v~QRN~AL 268 (443)
||.|||.... .|.++-+.|....+++--|||.|+++ +.+.++++ ..+-.-.++... .... ..+| -..+|.|+
T Consensus 1 ViIp~~Ne~~---~l~~~l~sl~~~~~~~eIivvdd~S~-D~t~~~~~~~~~~~~v~~i~~-~~~~-~~~Gk~~aln~g~ 74 (191)
T cd06436 1 VLVPCLNEEA---VIQRTLASLLRNKPNFLVLVIDDASD-DDTAGIVRLAITDSRVHLLRR-HLPN-ARTGKGDALNAAY 74 (191)
T ss_pred CEEeccccHH---HHHHHHHHHHhCCCCeEEEEEECCCC-cCHHHHHhheecCCcEEEEec-cCCc-CCCCHHHHHHHHH
Confidence 5789998764 34444454444334788889988653 33444444 211111121111 0011 1122 47899999
Q ss_pred HHHHhhC-C-----Ce-EEEEecCCCcccHHHHHHhhc
Q 013414 269 SHIENHH-L-----DG-IVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 269 ~~Ir~h~-l-----~G-VVYFADDDNtYdl~LFdemR~ 299 (443)
+.++... . ++ +|.|.|.|..++.+.++.+..
T Consensus 75 ~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~ 112 (191)
T cd06436 75 DQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAP 112 (191)
T ss_pred HHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHH
Confidence 9987532 1 22 889999999999999998654
No 25
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=95.05 E-value=0.23 Score=45.38 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=56.7
Q ss_pred EEEEccCCCcchhhhhHHHHHhhhccC-C--CCceEEEEecCCCCHHHHHHHHhcCC--ceeEeeecCCCCCCCchhhhH
Q 013414 189 IIIVTPTDAQPFQAYYLNRLAHTLRMV-Q--PPLLWIVVEMTSQSEETADVLRRTGV--MYRHLVCKKNLTDVKDTRVHQ 263 (443)
Q Consensus 189 IivVTPTy~R~~Q~a~LTRLahTL~lV-p--p~L~WIVVEd~~~s~~ta~lLrrsGl--~y~HL~~~~~~~~~~~rgv~Q 263 (443)
+-||.|||.++.. |.++-+.|+.- . .+.-=|||++++. +.+.+++++.+- +..++....+ . -.-..
T Consensus 2 ~sIiip~~n~~~~---l~~~l~sl~~q~~~~~~~evivvd~~s~-d~~~~~~~~~~~~~~~v~~i~~~~--~---~~~~a 72 (249)
T cd02525 2 VSIIIPVRNEEKY---IEELLESLLNQSYPKDLIEIIVVDGGST-DGTREIVQEYAAKDPRIRLIDNPK--R---IQSAG 72 (249)
T ss_pred EEEEEEcCCchhh---HHHHHHHHHhccCCCCccEEEEEeCCCC-ccHHHHHHHHHhcCCeEEEEeCCC--C---CchHH
Confidence 5689999998643 34433444321 1 2444556776543 334445444332 2223322211 1 12357
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhh
Q 013414 264 RNVALSHIENHHLDGIVYFADENNIYLTDLFEELR 298 (443)
Q Consensus 264 RN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR 298 (443)
+|.|+++. ..-+|.|.|+|..++...+++|-
T Consensus 73 ~N~g~~~a----~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 73 LNIGIRNS----RGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred HHHHHHHh----CCCEEEEECCCccCCHHHHHHHH
Confidence 99999886 23478999999999999888855
No 26
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=94.71 E-value=0.47 Score=43.44 Aligned_cols=96 Identities=13% Similarity=0.145 Sum_probs=56.3
Q ss_pred EEEEccCCCcc-hhhhhHHHHHhhhccCCCCceEEEEecCCCCHHHHHHHH-hcC-CceeEeeecCCCCCCCchhhhHHH
Q 013414 189 IIIVTPTDAQP-FQAYYLNRLAHTLRMVQPPLLWIVVEMTSQSEETADVLR-RTG-VMYRHLVCKKNLTDVKDTRVHQRN 265 (443)
Q Consensus 189 IivVTPTy~R~-~Q~a~LTRLahTL~lVpp~L~WIVVEd~~~s~~ta~lLr-rsG-l~y~HL~~~~~~~~~~~rgv~QRN 265 (443)
|-||+|||.+. .... +.-+.|..-. +.-.|||.|+... .+.++|. ... ....++. .++. --...+|
T Consensus 2 isVvIp~~ne~~~~l~---~~l~sl~~q~-~~eiivvdd~s~d-~~~~~l~~~~~~~~~~v~~-~~~~-----g~~~a~n 70 (235)
T cd06434 2 VTVIIPVYDEDPDVFR---ECLRSILRQK-PLEIIVVTDGDDE-PYLSILSQTVKYGGIFVIT-VPHP-----GKRRALA 70 (235)
T ss_pred eEEEEeecCCChHHHH---HHHHHHHhCC-CCEEEEEeCCCCh-HHHHHHHhhccCCcEEEEe-cCCC-----ChHHHHH
Confidence 56899999986 3332 2222222222 5788999887643 3444431 111 1112221 1111 1135678
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 266 VALSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 266 ~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
.||++. ..=+|.|.|+|..++.+.+++|-+
T Consensus 71 ~g~~~a----~~d~v~~lD~D~~~~~~~l~~l~~ 100 (235)
T cd06434 71 EGIRHV----TTDIVVLLDSDTVWPPNALPEMLK 100 (235)
T ss_pred HHHHHh----CCCEEEEECCCceeChhHHHHHHH
Confidence 888765 345999999999999999888653
No 27
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=94.66 E-value=0.13 Score=46.55 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=56.3
Q ss_pred EEccCCCcchhhhhHHHHHhhhcc-C-CCCceEEEEecCCC--CHHHHHHHHhcCCceeEeeecCCCCCCCchh-hhHHH
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLRM-V-QPPLLWIVVEMTSQ--SEETADVLRRTGVMYRHLVCKKNLTDVKDTR-VHQRN 265 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~l-V-pp~L~WIVVEd~~~--s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rg-v~QRN 265 (443)
||.|||.++... .++-+.|.. . ..++--|||.|+++ +.++++-+.... ....+... .+..| ..-+|
T Consensus 1 ViIp~yn~~~~l---~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~-~~i~~~~~-----~~n~G~~~a~n 71 (224)
T cd06442 1 IIIPTYNERENI---PELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEY-PRVRLIVR-----PGKRGLGSAYI 71 (224)
T ss_pred CeEeccchhhhH---HHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhC-CceEEEec-----CCCCChHHHHH
Confidence 578999987543 333333332 1 24788999998653 333333222211 11111111 11233 36789
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 266 VALSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 266 ~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
.|+++.+. -+|.|.|+|..++.+.++.|-+
T Consensus 72 ~g~~~a~g----d~i~~lD~D~~~~~~~l~~l~~ 101 (224)
T cd06442 72 EGFKAARG----DVIVVMDADLSHPPEYIPELLE 101 (224)
T ss_pred HHHHHcCC----CEEEEEECCCCCCHHHHHHHHH
Confidence 99988643 4889999999999998888654
No 28
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=94.46 E-value=0.65 Score=43.17 Aligned_cols=105 Identities=23% Similarity=0.196 Sum_probs=62.0
Q ss_pred CCCCcceEEEEccCCCcchhhhhHHHHHhhh-ccCCCC--ceEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCc
Q 013414 182 DLVSRKLIIIVTPTDAQPFQAYYLNRLAHTL-RMVQPP--LLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKD 258 (443)
Q Consensus 182 ~~~~~~lIivVTPTy~R~~Q~a~LTRLahTL-~lVpp~--L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~ 258 (443)
.....|.|-||.|||.+..- |.+.-+.+ .+..++ +.=|||.|+.. +.+.+++++-+-...++...++ . .
T Consensus 24 ~~~~~~~isVvip~~n~~~~---l~~~l~si~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~v~~i~~~~--~--~ 95 (251)
T cd06439 24 DPAYLPTVTIIIPAYNEEAV---IEAKLENLLALDYPRDRLEIIVVSDGST-DGTAEIAREYADKGVKLLRFPE--R--R 95 (251)
T ss_pred CCCCCCEEEEEEecCCcHHH---HHHHHHHHHhCcCCCCcEEEEEEECCCC-ccHHHHHHHHhhCcEEEEEcCC--C--C
Confidence 33457789999999998633 33322222 222223 55577777643 3444555543322222222211 1 1
Q ss_pred hhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhh
Q 013414 259 TRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELR 298 (443)
Q Consensus 259 rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR 298 (443)
....+||.|+++.. .-+|.|.|+|..++.+.+++|=
T Consensus 96 g~~~a~n~gi~~a~----~d~i~~lD~D~~~~~~~l~~l~ 131 (251)
T cd06439 96 GKAAALNRALALAT----GEIVVFTDANALLDPDALRLLV 131 (251)
T ss_pred ChHHHHHHHHHHcC----CCEEEEEccccCcCHHHHHHHH
Confidence 23578999998864 2689999999999998888743
No 29
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=94.42 E-value=0.63 Score=43.59 Aligned_cols=100 Identities=17% Similarity=0.102 Sum_probs=60.7
Q ss_pred ceEEEEccCCCcchhhhhHHHHHhhhccC--CC-CceEEEEecCCCCHHHHHHHHhcCCc-eeEeeecCCCCCCCchh-h
Q 013414 187 KLIIIVTPTDAQPFQAYYLNRLAHTLRMV--QP-PLLWIVVEMTSQSEETADVLRRTGVM-YRHLVCKKNLTDVKDTR-V 261 (443)
Q Consensus 187 ~lIivVTPTy~R~~Q~a~LTRLahTL~lV--pp-~L~WIVVEd~~~s~~ta~lLrrsGl~-y~HL~~~~~~~~~~~rg-v 261 (443)
|.|-||.|||..... |.++-+.|... |+ .+-=|||.|++ ++.+.+++++.+.. +.++....+. ...| .
T Consensus 1 p~vsIiIp~~Ne~~~---l~~~l~sl~~~~y~~~~~eiivVdd~s-~d~t~~i~~~~~~~~~~~i~~~~~~---~~~G~~ 73 (241)
T cd06427 1 PVYTILVPLYKEAEV---LPQLIASLSALDYPRSKLDVKLLLEED-DEETIAAARALRLPSIFRVVVVPPS---QPRTKP 73 (241)
T ss_pred CeEEEEEecCCcHHH---HHHHHHHHHhCcCCcccEEEEEEECCC-CchHHHHHHHhccCCCeeEEEecCC---CCCchH
Confidence 568899999998644 33333344332 21 24445666654 45677788776542 2223221111 1122 3
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 262 HQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 262 ~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
..+|.|+++.+ .-+|.|.|+|..++.+.++++
T Consensus 74 ~a~n~g~~~a~----gd~i~~~DaD~~~~~~~l~~~ 105 (241)
T cd06427 74 KACNYALAFAR----GEYVVIYDAEDAPDPDQLKKA 105 (241)
T ss_pred HHHHHHHHhcC----CCEEEEEcCCCCCChHHHHHH
Confidence 67999998642 347889999999999998873
No 30
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=94.14 E-value=0.28 Score=44.56 Aligned_cols=103 Identities=13% Similarity=0.068 Sum_probs=57.6
Q ss_pred ceEEEEccCCCcchhhhhHHHHHhhhcc-CCCCceEEEEecCCCCHHHHHHHHhcC-----CceeEeeecCCCCCCCchh
Q 013414 187 KLIIIVTPTDAQPFQAYYLNRLAHTLRM-VQPPLLWIVVEMTSQSEETADVLRRTG-----VMYRHLVCKKNLTDVKDTR 260 (443)
Q Consensus 187 ~lIivVTPTy~R~~Q~a~LTRLahTL~l-Vpp~L~WIVVEd~~~s~~ta~lLrrsG-----l~y~HL~~~~~~~~~~~rg 260 (443)
|.|-||.|+|..... |.++-+.|.. .-+++--|||.|+.+ ..+.++|++.. +.++++....+ ......
T Consensus 1 p~vsviip~~n~~~~---l~~~L~sl~~q~~~~~eiivVdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~ 74 (196)
T cd02520 1 PGVSILKPLCGVDPN---LYENLESFFQQDYPKYEILFCVQDED-DPAIPVVRKLIAKYPNVDARLLIGGEK--VGINPK 74 (196)
T ss_pred CCeEEEEecCCCCcc---HHHHHHHHHhccCCCeEEEEEeCCCc-chHHHHHHHHHHHCCCCcEEEEecCCc--CCCCHh
Confidence 357799999997544 3333333332 213677778888653 23333443322 22333322111 111122
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 261 VHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 261 v~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
..+.|.|++..+ .-+|.|.|+|..++.+.+++|-.
T Consensus 75 ~~~~n~g~~~a~----~d~i~~~D~D~~~~~~~l~~l~~ 109 (196)
T cd02520 75 VNNLIKGYEEAR----YDILVISDSDISVPPDYLRRMVA 109 (196)
T ss_pred HHHHHHHHHhCC----CCEEEEECCCceEChhHHHHHHH
Confidence 355677877532 34788999999999999988643
No 31
>PRK10073 putative glycosyl transferase; Provisional
Probab=94.13 E-value=0.41 Score=48.37 Aligned_cols=100 Identities=21% Similarity=0.199 Sum_probs=62.5
Q ss_pred cceEEEEccCCCcchhhhhHHHHHhhhc-cCCCCceEEEEecCCC--CHHHHHHHHhcCCceeEeeecCCCCCCCchh-h
Q 013414 186 RKLIIIVTPTDAQPFQAYYLNRLAHTLR-MVQPPLLWIVVEMTSQ--SEETADVLRRTGVMYRHLVCKKNLTDVKDTR-V 261 (443)
Q Consensus 186 ~~lIivVTPTy~R~~Q~a~LTRLahTL~-lVpp~L~WIVVEd~~~--s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rg-v 261 (443)
.|.|-||.|+|.+. .+|.+.-+.|. +--+++-.|||.|+++ +.++.+-+....-..+.+ ..+| .| .
T Consensus 5 ~p~vSVIIP~yN~~---~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi-~~~n------~G~~ 74 (328)
T PRK10073 5 TPKLSIIIPLYNAG---KDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLL-HQAN------AGVS 74 (328)
T ss_pred CCeEEEEEeccCCH---HHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEE-ECCC------CChH
Confidence 57899999999986 24554333332 2224789999999764 334433332211112222 2222 23 3
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 262 HQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 262 ~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
..||.||+..+ .-.|.|.|+|..++.+.+++|-.
T Consensus 75 ~arN~gl~~a~----g~yi~flD~DD~~~p~~l~~l~~ 108 (328)
T PRK10073 75 VARNTGLAVAT----GKYVAFPDADDVVYPTMYETLMT 108 (328)
T ss_pred HHHHHHHHhCC----CCEEEEECCCCccChhHHHHHHH
Confidence 67999998752 34899999999999998887543
No 32
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=93.59 E-value=0.87 Score=40.75 Aligned_cols=99 Identities=18% Similarity=0.151 Sum_probs=59.0
Q ss_pred EEccCCCcchhhh-hHHHHHhhhccCC-CCceEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCchh-hhHHHHH
Q 013414 191 IVTPTDAQPFQAY-YLNRLAHTLRMVQ-PPLLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKDTR-VHQRNVA 267 (443)
Q Consensus 191 vVTPTy~R~~Q~a-~LTRLahTL~lVp-p~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rg-v~QRN~A 267 (443)
||-|+|....-.. -|..+.+.. -| .++-=|||.|++ ++.|.+++++.+..+... ..+ ..+| -..+|.|
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~--~p~~~~eiivvdd~s-~D~t~~~~~~~~~~~~~~--~~~----~~~gk~~aln~g 71 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQD--YPRELYRIFVVADNC-TDDTAQVARAAGATVLER--HDP----ERRGKGYALDFG 71 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcC--CCCcccEEEEEeCCC-CchHHHHHHHcCCeEEEe--CCC----CCCCHHHHHHHH
Confidence 5678888763222 223332211 11 134456787765 466778888877652211 111 1122 3568888
Q ss_pred HHHHHhhCC-CeEEEEecCCCcccHHHHHHhh
Q 013414 268 LSHIENHHL-DGIVYFADENNIYLTDLFEELR 298 (443)
Q Consensus 268 L~~Ir~h~l-~GVVYFADDDNtYdl~LFdemR 298 (443)
+++.++... .-+|.|.|.|..++.+.+.+|.
T Consensus 72 ~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~ 103 (183)
T cd06438 72 FRHLLNLADDPDAVVVFDADNLVDPNALEELN 103 (183)
T ss_pred HHHHHhcCCCCCEEEEEcCCCCCChhHHHHHH
Confidence 888864333 3488999999999999998864
No 33
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=93.52 E-value=0.51 Score=43.28 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=53.8
Q ss_pred EEccCCCcchhhhhHHHHHhhhcc--CCCCceEEEEecCCCCHHHHHHHHh-------cCCceeEeeecCCCCCCCchhh
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLRM--VQPPLLWIVVEMTSQSEETADVLRR-------TGVMYRHLVCKKNLTDVKDTRV 261 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~l--Vpp~L~WIVVEd~~~s~~ta~lLrr-------sGl~y~HL~~~~~~~~~~~rgv 261 (443)
||.|||.+..+ |.++-+.|.. .++++-.|||.|++. +.+.+++++ .++.+.++.. + .....|.
T Consensus 1 ViIp~yn~~~~---l~~~l~sl~~q~~~~~~eiiVvDd~S~-d~t~~i~~~~~~~~~~~~~~~~~~~~--~--~~~~~G~ 72 (219)
T cd06913 1 IILPVHNGEQW---LDECLESVLQQDFEGTLELSVFNDAST-DKSAEIIEKWRKKLEDSGVIVLVGSH--N--SPSPKGV 72 (219)
T ss_pred CEEeecCcHHH---HHHHHHHHHhCCCCCCEEEEEEeCCCC-ccHHHHHHHHHHhCcccCeEEEEecc--c--CCCCccH
Confidence 58899998643 3344344432 222578899998653 223333333 1222222211 1 1123455
Q ss_pred -hHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH
Q 013414 262 -HQRNVALSHIENHHLDGIVYFADENNIYLTDLFEE 296 (443)
Q Consensus 262 -~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFde 296 (443)
..||.|++..+ .=+|.|.|+|..++.+.+++
T Consensus 73 ~~a~N~g~~~a~----gd~i~~lD~D~~~~~~~l~~ 104 (219)
T cd06913 73 GYAKNQAIAQSS----GRYLCFLDSDDVMMPQRIRL 104 (219)
T ss_pred HHHHHHHHHhcC----CCEEEEECCCccCChhHHHH
Confidence 67899986532 23999999999998876655
No 34
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=93.17 E-value=0.44 Score=43.67 Aligned_cols=93 Identities=18% Similarity=0.152 Sum_probs=56.4
Q ss_pred EEccCCCcchhhhhHHHHHhhhccCCCCceEEEEecCCCCHHHHHHHH--hcCCceeEeeecCCCCCCCchh-hhHHHHH
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTSQSEETADVLR--RTGVMYRHLVCKKNLTDVKDTR-VHQRNVA 267 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~~s~~ta~lLr--rsGl~y~HL~~~~~~~~~~~rg-v~QRN~A 267 (443)
+|.|||.+.. ..|.+.-+.|..- ....|||+|++. +.+...++ ..++.+ +..+.| .| ...||.|
T Consensus 1 ~vI~~yn~~~--~~l~~~l~sl~~q--~~~iivvDn~s~-~~~~~~~~~~~~~i~~--i~~~~n------~G~~~a~N~g 67 (237)
T cd02526 1 AVVVTYNPDL--SKLKELLAALAEQ--VDKVVVVDNSSG-NDIELRLRLNSEKIEL--IHLGEN------LGIAKALNIG 67 (237)
T ss_pred CEEEEecCCH--HHHHHHHHHHhcc--CCEEEEEeCCCC-ccHHHHhhccCCcEEE--EECCCc------eehHHhhhHH
Confidence 4678888762 2233333333321 467788888653 22222332 333333 322222 33 4779999
Q ss_pred HHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 268 LSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 268 L~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
++..+.+ ..=.|.|.|+|...+.+.+++|
T Consensus 68 ~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l 96 (237)
T cd02526 68 IKAALEN-GADYVLLFDQDSVPPPDMVEKL 96 (237)
T ss_pred HHHHHhC-CCCEEEEECCCCCcCHhHHHHH
Confidence 9988664 2348999999999999999998
No 35
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=93.15 E-value=1.1 Score=41.43 Aligned_cols=102 Identities=11% Similarity=0.160 Sum_probs=61.6
Q ss_pred ceEEEEccCCCcchhhhhHHHHHhhhccC--C-CCceEEEEecCCC-CHHH-HHHHH---hcCCceeEeeecCCCCCCCc
Q 013414 187 KLIIIVTPTDAQPFQAYYLNRLAHTLRMV--Q-PPLLWIVVEMTSQ-SEET-ADVLR---RTGVMYRHLVCKKNLTDVKD 258 (443)
Q Consensus 187 ~lIivVTPTy~R~~Q~a~LTRLahTL~lV--p-p~L~WIVVEd~~~-s~~t-a~lLr---rsGl~y~HL~~~~~~~~~~~ 258 (443)
|.|-||-|||.... .|.+.-..|... | ..+--|||+|++. |..+ .+++. ..++..+|+..+++. ..
T Consensus 1 p~vSViIp~yNe~~---~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~-G~-- 74 (232)
T cd06437 1 PMVTVQLPVFNEKY---VVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRT-GY-- 74 (232)
T ss_pred CceEEEEecCCcHH---HHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCC-CC--
Confidence 35779999998753 333444444332 2 1256677776432 2222 23332 236677777644321 11
Q ss_pred hhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 259 TRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 259 rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
....+|.|++.. ..-+|.|.|.|...+.+.+++|-.
T Consensus 75 -k~~a~n~g~~~a----~~~~i~~~DaD~~~~~~~l~~~~~ 110 (232)
T cd06437 75 -KAGALAEGMKVA----KGEYVAIFDADFVPPPDFLQKTPP 110 (232)
T ss_pred -chHHHHHHHHhC----CCCEEEEEcCCCCCChHHHHHhhh
Confidence 246789999765 234999999999999999888654
No 36
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=93.01 E-value=1.5 Score=44.40 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=65.7
Q ss_pred cceEEEEccCCCcchhhhh-HHHHHhhhccCCCCceEEEEecCCC--CHHHHHHH-HhcCCceeEeeecCCCCCCCchhh
Q 013414 186 RKLIIIVTPTDAQPFQAYY-LNRLAHTLRMVQPPLLWIVVEMTSQ--SEETADVL-RRTGVMYRHLVCKKNLTDVKDTRV 261 (443)
Q Consensus 186 ~~lIivVTPTy~R~~Q~a~-LTRLahTL~lVpp~L~WIVVEd~~~--s~~ta~lL-rrsGl~y~HL~~~~~~~~~~~rgv 261 (443)
.+.|-||-|+|........ |.+|...+...+.+.-=|||+|+++ |.++.+-+ ++.+....++...+| .|.
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n------~G~ 78 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRN------YGQ 78 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCC------CCH
Confidence 4568999999997665543 4456666666655678899999653 44443333 333544444333322 232
Q ss_pred -hHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhh
Q 013414 262 -HQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELR 298 (443)
Q Consensus 262 -~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR 298 (443)
...|.|+++. ..-+|.|.|.|..|+.+...+|-
T Consensus 79 ~~A~~~G~~~A----~gd~vv~~DaD~q~~p~~i~~l~ 112 (325)
T PRK10714 79 HSAIMAGFSHV----TGDLIITLDADLQNPPEEIPRLV 112 (325)
T ss_pred HHHHHHHHHhC----CCCEEEEECCCCCCCHHHHHHHH
Confidence 4577888764 23478899999999998887743
No 37
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=92.91 E-value=1.2 Score=45.79 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=62.7
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhhhcc--CCCCceEEEEecCCCCHHHHHHHHhcCCce-----eEeeecCCCCCCC
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTLRM--VQPPLLWIVVEMTSQSEETADVLRRTGVMY-----RHLVCKKNLTDVK 257 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahTL~l--Vpp~L~WIVVEd~~~s~~ta~lLrrsGl~y-----~HL~~~~~~~~~~ 257 (443)
..|.|-||.|+|...... .++-+.|.. .|.++--|||.|+++ +.|.+++++..-.| .++...++.+...
T Consensus 38 ~~p~VSVIIpa~Ne~~~L---~~~L~sL~~q~yp~~~eIIVVDd~St-D~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~ 113 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVI---GECVTSLLEQDYPGKLHVILVDDHST-DGTADIARAAARAYGRGDRLTVVSGQPLPPGW 113 (384)
T ss_pred CCCCEEEEEecCCcHhHH---HHHHHHHHhCCCCCceEEEEEeCCCC-CcHHHHHHHHHHhcCCCCcEEEecCCCCCCCC
Confidence 457799999999987543 344444432 332467778887643 33444444322111 1221111111111
Q ss_pred chhhhHHHHHHHHHHhhCCC-eEEEEecCCCcccHHHHHHh
Q 013414 258 DTRVHQRNVALSHIENHHLD-GIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 258 ~rgv~QRN~AL~~Ir~h~l~-GVVYFADDDNtYdl~LFdem 297 (443)
.......|.|++..++...+ -+|.|.|+|...+.+.++++
T Consensus 114 ~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~l 154 (384)
T TIGR03469 114 SGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARL 154 (384)
T ss_pred cchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHH
Confidence 12246788888887655433 48999999999998887773
No 38
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=92.30 E-value=1.6 Score=38.26 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=59.0
Q ss_pred EEccCCCcchhhhhHHHHHhhhcc-CCCCceEEEEecCCCCHHHHHHH----HhcCCceeEeeecCCCCCCCchhhhHHH
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLRM-VQPPLLWIVVEMTSQSEETADVL----RRTGVMYRHLVCKKNLTDVKDTRVHQRN 265 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~l-Vpp~L~WIVVEd~~~s~~ta~lL----rrsGl~y~HL~~~~~~~~~~~rgv~QRN 265 (443)
||+|+|.++.+. .++-+.|.. --++.--|||+|++. +.+.+++ .+.+....|+.... .. -.....||
T Consensus 1 ivip~~n~~~~l---~~~l~sl~~q~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~n 72 (182)
T cd06420 1 LIITTYNRPEAL---ELVLKSVLNQSILPFEVIIADDGST-EETKELIEEFKSQFPIPIKHVWQED--EG--FRKAKIRN 72 (182)
T ss_pred CEEeecCChHHH---HHHHHHHHhccCCCCEEEEEeCCCc-hhHHHHHHHHHhhcCCceEEEEcCC--cc--hhHHHHHH
Confidence 588999987543 233333322 123677789998764 2333333 33445555553221 11 12246789
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 266 VALSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 266 ~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
.|+++.+ .-+|.|.|+|...+...+++|.+
T Consensus 73 ~g~~~a~----g~~i~~lD~D~~~~~~~l~~~~~ 102 (182)
T cd06420 73 KAIAAAK----GDYLIFIDGDCIPHPDFIADHIE 102 (182)
T ss_pred HHHHHhc----CCEEEEEcCCcccCHHHHHHHHH
Confidence 9988753 45899999999999998888654
No 39
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=92.21 E-value=0.91 Score=43.64 Aligned_cols=72 Identities=15% Similarity=0.086 Sum_probs=47.8
Q ss_pred CceEEEEecCCCC-HHHHHHHHh-cCCceeEeeecCCCCCCCchh-hhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHH
Q 013414 218 PLLWIVVEMTSQS-EETADVLRR-TGVMYRHLVCKKNLTDVKDTR-VHQRNVALSHIENHHLDGIVYFADENNIYLTDLF 294 (443)
Q Consensus 218 ~L~WIVVEd~~~s-~~ta~lLrr-sGl~y~HL~~~~~~~~~~~rg-v~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LF 294 (443)
....|||++++.+ ..+.++++. ..+.+.|+ ++| .| -.-+|.|+++..++.- -.|.|.|||.+.+.+.+
T Consensus 21 ~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~--~~N------~G~a~a~N~Gi~~a~~~~~-d~i~~lD~D~~~~~~~l 91 (281)
T TIGR01556 21 VDRIIAVDNSPHSDQPLKNARLRGQKIALIHL--GDN------QGIAGAQNQGLDASFRRGV-QGVLLLDQDSRPGNAFL 91 (281)
T ss_pred CCEEEEEECcCCCcHhHHHHhccCCCeEEEEC--CCC------cchHHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHH
Confidence 3689999998654 355666664 23333332 222 34 3679999999876533 36679999999988877
Q ss_pred HHhh
Q 013414 295 EELR 298 (443)
Q Consensus 295 demR 298 (443)
++|-
T Consensus 92 ~~l~ 95 (281)
T TIGR01556 92 AAQW 95 (281)
T ss_pred HHHH
Confidence 7744
No 40
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=92.18 E-value=1.5 Score=39.85 Aligned_cols=101 Identities=20% Similarity=0.184 Sum_probs=60.5
Q ss_pred EEccCCCcchhh-hhHHHHHhhhcc-CCCCceEEEEecCCC--CHHHH-HHHHhcCCceeEeeecCCCCCCCchhhhHHH
Q 013414 191 IVTPTDAQPFQA-YYLNRLAHTLRM-VQPPLLWIVVEMTSQ--SEETA-DVLRRTGVMYRHLVCKKNLTDVKDTRVHQRN 265 (443)
Q Consensus 191 vVTPTy~R~~Q~-a~LTRLahTL~l-Vpp~L~WIVVEd~~~--s~~ta-~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN 265 (443)
||.|+|....-. .-|..|...+.. -++++-.|||.|+++ +.++. ++..+.+-..+++..++|. .-...+|
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~-----G~~~a~~ 75 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNR-----GKGGAVR 75 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCC-----CcHHHHH
Confidence 578999865322 234444433322 334788999998653 33333 2333333333444444331 1136788
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhcc
Q 013414 266 VALSHIENHHLDGIVYFADENNIYLTDLFEELRQI 300 (443)
Q Consensus 266 ~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~i 300 (443)
.|++... .=+|.|.|.|..|+.+.+++|-+.
T Consensus 76 ~g~~~a~----gd~i~~ld~D~~~~~~~l~~l~~~ 106 (211)
T cd04188 76 AGMLAAR----GDYILFADADLATPFEELEKLEEA 106 (211)
T ss_pred HHHHHhc----CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 8888763 258999999999999998886553
No 41
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=91.98 E-value=1.3 Score=38.67 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=58.1
Q ss_pred EEccCCCcchhhhhHHHHHhhhccC---CCCceEEEEecCCCCHHHHHHHHhcCCce---eEeeecCCCCCCCchhhhHH
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLRMV---QPPLLWIVVEMTSQSEETADVLRRTGVMY---RHLVCKKNLTDVKDTRVHQR 264 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~lV---pp~L~WIVVEd~~~s~~ta~lLrrsGl~y---~HL~~~~~~~~~~~rgv~QR 264 (443)
||.|||.++.. |-++-+.|..- ..+.-.|||.|++. +.+.+++++.+-.+ +++..++|.. -...+
T Consensus 1 iii~~~n~~~~---l~~~l~sl~~~~~~~~~~eiivvd~~s~-d~~~~~~~~~~~~~~~~~~~~~~~n~G-----~~~a~ 71 (185)
T cd04179 1 VVIPAYNEEEN---IPELVERLLAVLEEGYDYEIIVVDDGST-DGTAEIARELAARVPRVRVIRLSRNFG-----KGAAV 71 (185)
T ss_pred CeecccChHhh---HHHHHHHHHHHhccCCCEEEEEEcCCCC-CChHHHHHHHHHhCCCeEEEEccCCCC-----ccHHH
Confidence 57899997633 22222222222 23688899998764 23455555443333 2333333211 24678
Q ss_pred HHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 265 NVALSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 265 N~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
|.|++..+. =+|.|.|+|..++.+..++|=.
T Consensus 72 n~g~~~a~g----d~i~~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 72 RAGFKAARG----DIVVTMDADLQHPPEDIPKLLE 102 (185)
T ss_pred HHHHHHhcC----CEEEEEeCCCCCCHHHHHHHHH
Confidence 888877653 4889999999999998887543
No 42
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=91.82 E-value=1.6 Score=43.92 Aligned_cols=107 Identities=15% Similarity=0.039 Sum_probs=63.9
Q ss_pred CcceEEEEccCCCcchhhhh-HHHHHhhhccCCCCceEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCchhh-h
Q 013414 185 SRKLIIIVTPTDAQPFQAYY-LNRLAHTLRMVQPPLLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKDTRV-H 262 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~-LTRLahTL~lVpp~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv-~ 262 (443)
..+.|-||-|+|.......+ |..+.+.+.. +.+.-.|||.|++ ++.|.+++++.|..+.+....-.. ....+|. .
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~-~~~~EIIVVDDgS-tD~T~~ia~~~~~~v~~~~~~~~~-~~~n~Gkg~ 105 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLME-PLVDELIVIDSGS-TDATAERAAAAGARVVSREEILPE-LPPRPGKGE 105 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhcc-CCCcEEEEEeCCC-ccHHHHHHHHhcchhhcchhhhhc-cccCCCHHH
Confidence 56789999999998655433 3334433321 2246788999865 356777888877654432110000 0111222 4
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCc-ccHHHHHHhh
Q 013414 263 QRNVALSHIENHHLDGIVYFADENNI-YLTDLFEELR 298 (443)
Q Consensus 263 QRN~AL~~Ir~h~l~GVVYFADDDNt-Ydl~LFdemR 298 (443)
..|.|+... ..-+|.|.|.|.. |+.+...+|-
T Consensus 106 A~~~g~~~a----~gd~vv~lDaD~~~~~p~~l~~l~ 138 (306)
T PRK13915 106 ALWRSLAAT----TGDIVVFVDADLINFDPMFVPGLL 138 (306)
T ss_pred HHHHHHHhc----CCCEEEEEeCccccCCHHHHHHHH
Confidence 566776542 2358889999996 8988777643
No 43
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=91.44 E-value=7.2 Score=39.70 Aligned_cols=105 Identities=17% Similarity=0.083 Sum_probs=62.0
Q ss_pred CCCcceEEEEccCCCcchhhhh-HHHHHhhhc----cCC-CCceEEEEecCCC--CHHHHHHHHhc----CCceeEeeec
Q 013414 183 LVSRKLIIIVTPTDAQPFQAYY-LNRLAHTLR----MVQ-PPLLWIVVEMTSQ--SEETADVLRRT----GVMYRHLVCK 250 (443)
Q Consensus 183 ~~~~~lIivVTPTy~R~~Q~a~-LTRLahTL~----lVp-p~L~WIVVEd~~~--s~~ta~lLrrs----Gl~y~HL~~~ 250 (443)
..+.+.|-||-|+|........ |.++.+.+. .-+ .++--|||.|+++ |.++++-+... +...+.+..+
T Consensus 66 ~~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~ 145 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLL 145 (333)
T ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcC
Confidence 3467889999999997554332 333333332 122 2578899999753 44444433322 1223333333
Q ss_pred CCCCCCCchhh-hHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 251 KNLTDVKDTRV-HQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 251 ~~~~~~~~rgv-~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
+| .|. ..+|.|++.- ..-+|.|.|.|+.++.+.++++
T Consensus 146 ~N------~G~~~A~~~Gi~~a----~gd~I~~~DaD~~~~~~~l~~l 183 (333)
T PTZ00260 146 RN------KGKGGAVRIGMLAS----RGKYILMVDADGATDIDDFDKL 183 (333)
T ss_pred CC------CChHHHHHHHHHHc----cCCEEEEEeCCCCCCHHHHHHH
Confidence 32 232 4477788753 2348889999999998887664
No 44
>PRK11204 N-glycosyltransferase; Provisional
Probab=90.63 E-value=2.1 Score=43.78 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=59.7
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhhhc-cCCCCceEEEEecCCCCHHHHHHHHhcCCc---eeEeeecCCCCCCCchh
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTLR-MVQPPLLWIVVEMTSQSEETADVLRRTGVM---YRHLVCKKNLTDVKDTR 260 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahTL~-lVpp~L~WIVVEd~~~s~~ta~lLrrsGl~---y~HL~~~~~~~~~~~rg 260 (443)
..|.|-||.|+|..... +.+....+. +--|++-.|||.|+++ +.+.+++++-.-. .+.+..++|. -.
T Consensus 52 ~~p~vsViIp~yne~~~---i~~~l~sl~~q~yp~~eiiVvdD~s~-d~t~~~l~~~~~~~~~v~~i~~~~n~-----Gk 122 (420)
T PRK11204 52 EYPGVSILVPCYNEGEN---VEETISHLLALRYPNYEVIAINDGSS-DNTGEILDRLAAQIPRLRVIHLAENQ-----GK 122 (420)
T ss_pred CCCCEEEEEecCCCHHH---HHHHHHHHHhCCCCCeEEEEEECCCC-ccHHHHHHHHHHhCCcEEEEEcCCCC-----CH
Confidence 45778999999998643 333333322 2224688999998654 2233444332211 1222212221 12
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhh
Q 013414 261 VHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELR 298 (443)
Q Consensus 261 v~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR 298 (443)
...+|.|++..+ .=+|.|.|+|+..+.+..++|-
T Consensus 123 a~aln~g~~~a~----~d~i~~lDaD~~~~~d~L~~l~ 156 (420)
T PRK11204 123 ANALNTGAAAAR----SEYLVCIDGDALLDPDAAAYMV 156 (420)
T ss_pred HHHHHHHHHHcC----CCEEEEECCCCCCChhHHHHHH
Confidence 466888887642 2488889999999999888854
No 45
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=90.06 E-value=1.7 Score=45.62 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=59.2
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhhhcc--CCCC-ceEEEEecCCCCHHHHHHHHhc-----CCceeEeeecCCCCCC
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTLRM--VQPP-LLWIVVEMTSQSEETADVLRRT-----GVMYRHLVCKKNLTDV 256 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahTL~l--Vpp~-L~WIVVEd~~~s~~ta~lLrrs-----Gl~y~HL~~~~~~~~~ 256 (443)
..|.|=||-|||.... .|.++-+.|.. .|+. +.-|||.|+. ++.|.+++++. ++..+++. ++
T Consensus 47 ~~P~vsVIIP~yNe~~---~l~~~l~sl~~q~yp~~~~eIiVVDd~S-tD~T~~il~~~~~~~~~v~v~~~~--~~---- 116 (439)
T TIGR03111 47 KLPDITIIIPVYNSED---TLFNCIESIYNQTYPIELIDIILANNQS-TDDSFQVFCRAQNEFPGLSLRYMN--SD---- 116 (439)
T ss_pred CCCCEEEEEEeCCChH---HHHHHHHHHHhcCCCCCCeEEEEEECCC-ChhHHHHHHHHHHhCCCeEEEEeC--CC----
Confidence 3577889999999763 33333333332 2322 4567777754 34444554422 23333331 11
Q ss_pred CchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhh
Q 013414 257 KDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELR 298 (443)
Q Consensus 257 ~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR 298 (443)
......+|.|++..+ .=+|.|.|.|+..+.+.+++|-
T Consensus 117 -~Gka~AlN~gl~~s~----g~~v~~~DaD~~~~~d~L~~l~ 153 (439)
T TIGR03111 117 -QGKAKALNAAIYNSI----GKYIIHIDSDGKLHKDAIKNMV 153 (439)
T ss_pred -CCHHHHHHHHHHHcc----CCEEEEECCCCCcChHHHHHHH
Confidence 122467899998643 2389999999999999998853
No 46
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=89.01 E-value=3.8 Score=39.95 Aligned_cols=95 Identities=18% Similarity=0.152 Sum_probs=57.6
Q ss_pred EEccCCCcchhhhhHHHHHhhhc-cCCCC--ceEEEEecCCCCHHHHHHHH---hcCCc-eeEeeecCCCCCCCchh-hh
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLR-MVQPP--LLWIVVEMTSQSEETADVLR---RTGVM-YRHLVCKKNLTDVKDTR-VH 262 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~-lVpp~--L~WIVVEd~~~s~~ta~lLr---rsGl~-y~HL~~~~~~~~~~~rg-v~ 262 (443)
||-|||.+. ...|.+.-+.|. +.++. .--|||+|++....+..+++ ....+ .+.+..++| .| ..
T Consensus 2 IIIp~~N~~--~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n------~G~~~ 73 (299)
T cd02510 2 VIIIFHNEA--LSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKR------EGLIR 73 (299)
T ss_pred EEEEEecCc--HHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCC------CCHHH
Confidence 678999876 234445444443 33333 36899999765444433322 22222 333332222 33 36
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 263 QRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 263 QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
.||.|++.- ..-+|.|.|+|-..+...+++|
T Consensus 74 a~N~g~~~A----~gd~i~fLD~D~~~~~~wL~~l 104 (299)
T cd02510 74 ARIAGARAA----TGDVLVFLDSHCEVNVGWLEPL 104 (299)
T ss_pred HHHHHHHHc----cCCEEEEEeCCcccCccHHHHH
Confidence 799999874 2459999999999988777774
No 47
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=87.20 E-value=3.2 Score=37.84 Aligned_cols=102 Identities=21% Similarity=0.198 Sum_probs=50.8
Q ss_pred ceEEEEccCCCcchhhhhHHHHHhhhccCC-CCceEEEEecCCC--C-HHHHHHHHhcCC-ceeEeeecCCCCCCCc-hh
Q 013414 187 KLIIIVTPTDAQPFQAYYLNRLAHTLRMVQ-PPLLWIVVEMTSQ--S-EETADVLRRTGV-MYRHLVCKKNLTDVKD-TR 260 (443)
Q Consensus 187 ~lIivVTPTy~R~~Q~a~LTRLahTL~lVp-p~L~WIVVEd~~~--s-~~ta~lLrrsGl-~y~HL~~~~~~~~~~~-rg 260 (443)
|.|.||-|+|.+..... +.-+.|.... +++.-|||.|+.. + +.+.++..+.+- ..+.+....+. .. -.
T Consensus 1 P~v~Vvip~~~~~~~l~---~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~---g~~~k 74 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLR---RCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNP---GPGGK 74 (228)
T ss_dssp --EEEE--BSS-HHHHH---HHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----H---HHHHH
T ss_pred CEEEEEEEecCCHHHHH---HHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCC---CcchH
Confidence 45889999999866332 2222222210 3688888876543 2 234444444432 23333222110 11 12
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhh
Q 013414 261 VHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELR 298 (443)
Q Consensus 261 v~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR 298 (443)
..++|.|++.++ .-+|.|.|||...+.+.++++-
T Consensus 75 ~~a~n~~~~~~~----~d~i~~lD~D~~~~p~~l~~~~ 108 (228)
T PF13641_consen 75 ARALNEALAAAR----GDYILFLDDDTVLDPDWLERLL 108 (228)
T ss_dssp HHHHHHHHHH-------SEEEEE-SSEEE-CHHHHHHH
T ss_pred HHHHHHHHHhcC----CCEEEEECCCcEECHHHHHHHH
Confidence 356788888876 4499999999999988888843
No 48
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=85.91 E-value=6.9 Score=41.04 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=58.5
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhhhccC-CCCceEEEEecCCCCHHHHHHHHhc-----CCceeEeeecCCCCCCCc
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTLRMV-QPPLLWIVVEMTSQSEETADVLRRT-----GVMYRHLVCKKNLTDVKD 258 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahTL~lV-pp~L~WIVVEd~~~s~~ta~lLrrs-----Gl~y~HL~~~~~~~~~~~ 258 (443)
..|.|-||-|+|....... +.-+.+... -|++-=|||.|+++ +.|.+++++. ++.+.|. ++|
T Consensus 73 ~~p~vsViIP~yNE~~~i~---~~l~sll~q~yp~~eIivVdDgs~-D~t~~~~~~~~~~~~~v~vv~~--~~n------ 140 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNAR---ETIHAALAQTYTNIEVIAINDGSS-DDTAQVLDALLAEDPRLRVIHL--AHN------ 140 (444)
T ss_pred CCCcEEEEEEeCCCHHHHH---HHHHHHHcCCCCCeEEEEEECCCC-ccHHHHHHHHHHhCCCEEEEEe--CCC------
Confidence 4578999999999764432 222333222 24688888888653 3344444432 2333332 111
Q ss_pred hh-hhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 259 TR-VHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 259 rg-v~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
+| ...+|.|++. ...-+|.+.|.|...+.+..++|
T Consensus 141 ~Gka~AlN~gl~~----a~~d~iv~lDAD~~~~~d~L~~l 176 (444)
T PRK14583 141 QGKAIALRMGAAA----ARSEYLVCIDGDALLDKNAVPYL 176 (444)
T ss_pred CCHHHHHHHHHHh----CCCCEEEEECCCCCcCHHHHHHH
Confidence 22 3567888765 23458999999999998877664
No 49
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=84.30 E-value=8 Score=37.97 Aligned_cols=99 Identities=22% Similarity=0.286 Sum_probs=65.8
Q ss_pred EEccCCCcchhhh----h---HHHHHhhhccCCCCceEEEEecCCCC---HHHHHHHHhcCCc-eeEeeecCCCCCCCch
Q 013414 191 IVTPTDAQPFQAY----Y---LNRLAHTLRMVQPPLLWIVVEMTSQS---EETADVLRRTGVM-YRHLVCKKNLTDVKDT 259 (443)
Q Consensus 191 vVTPTy~R~~Q~a----~---LTRLahTL~lVpp~L~WIVVEd~~~s---~~ta~lLrrsGl~-y~HL~~~~~~~~~~~r 259 (443)
||.|.+.+-.... - |.+|.++. .++.+-=||||++... ..+.+++...+.. |.+..-.. .. --
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~--~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~--~~--f~ 75 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQ--SDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNG--EP--FS 75 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcC--CCCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCC--CC--cC
Confidence 6888888764311 1 34444442 3457888999997642 4567777777766 54432111 00 12
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 260 RVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 260 gv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
.-..||.|.+.- ..-+|.|.|.|-..+.++++++.+
T Consensus 76 ~a~arN~g~~~A----~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 76 RAKARNIGAKYA----RGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred HHHHHHHHHHHc----CCCEEEEEcCCeeeCHHHHHHHHH
Confidence 246799999885 445999999999999999999776
No 50
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=75.12 E-value=31 Score=39.01 Aligned_cols=100 Identities=15% Similarity=0.235 Sum_probs=62.8
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhhhccCC---CCceEEEEecCCC--C---------------HHHHHHHHhcCCce
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTLRMVQ---PPLLWIVVEMTSQ--S---------------EETADVLRRTGVMY 244 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahTL~lVp---p~L~WIVVEd~~~--s---------------~~ta~lLrrsGl~y 244 (443)
..|.|=||-|||+.+....+- .-..+.... ..+.-|||+|+.+ + +++.++-++.|+.|
T Consensus 129 ~~P~VsViIP~yNE~~~iv~~--tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~y 206 (713)
T TIGR03030 129 EWPTVDVFIPTYNEDLEIVAT--TVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNY 206 (713)
T ss_pred cCCeeEEEEcCCCCCHHHHHH--HHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEE
Confidence 457888888999987654321 112222222 2478889998742 2 34566667777766
Q ss_pred eEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH
Q 013414 245 RHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEE 296 (443)
Q Consensus 245 ~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFde 296 (443)
.+ -++| . .......|.||++.+ .-+|.|-|.|...+-+..++
T Consensus 207 i~--r~~n-~---~~KAgnLN~al~~a~----gd~Il~lDAD~v~~pd~L~~ 248 (713)
T TIGR03030 207 IT--RPRN-V---HAKAGNINNALKHTD----GELILIFDADHVPTRDFLQR 248 (713)
T ss_pred EE--CCCC-C---CCChHHHHHHHHhcC----CCEEEEECCCCCcChhHHHH
Confidence 54 2222 1 112346789987632 24889999999999888877
No 51
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=74.71 E-value=17 Score=37.11 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=56.5
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhhh-ccCCCCceEEEEecCCCCHHHHHHHHhc-----CCceeEeeecCCCCCCCc
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTL-RMVQPPLLWIVVEMTSQSEETADVLRRT-----GVMYRHLVCKKNLTDVKD 258 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahTL-~lVpp~L~WIVVEd~~~s~~ta~lLrrs-----Gl~y~HL~~~~~~~~~~~ 258 (443)
..|.|-||-|+|.......+. -..| .+--|++--|||.|+++ +.+.+++++. ++..+.+..+. +
T Consensus 39 ~~p~VSViiP~~nee~~l~~~---L~Sl~~q~Yp~~EIivvdd~s~-D~t~~iv~~~~~~~p~~~i~~v~~~~------~ 108 (373)
T TIGR03472 39 AWPPVSVLKPLHGDEPELYEN---LASFCRQDYPGFQMLFGVQDPD-DPALAVVRRLRADFPDADIDLVIDAR------R 108 (373)
T ss_pred CCCCeEEEEECCCCChhHHHH---HHHHHhcCCCCeEEEEEeCCCC-CcHHHHHHHHHHhCCCCceEEEECCC------C
Confidence 357788999999987654432 2222 22224567777766442 2222333332 12222222111 2
Q ss_pred hhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhh
Q 013414 259 TRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELR 298 (443)
Q Consensus 259 rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR 298 (443)
.|......++...-++...-+|.|.|+|..-+.+..++|-
T Consensus 109 ~G~~~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv 148 (373)
T TIGR03472 109 HGPNRKVSNLINMLPHARHDILVIADSDISVGPDYLRQVV 148 (373)
T ss_pred CCCChHHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHH
Confidence 3333333333333234455699999999999999988864
No 52
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=53.16 E-value=91 Score=34.00 Aligned_cols=217 Identities=15% Similarity=0.144 Sum_probs=114.1
Q ss_pred CCcceEEEEccCCCc-chh-hhhHHHHHhhhccCCCCceEEEEecC--CCC---H----HHHHHHHhc-CCceeEeeecC
Q 013414 184 VSRKLIIIVTPTDAQ-PFQ-AYYLNRLAHTLRMVQPPLLWIVVEMT--SQS---E----ETADVLRRT-GVMYRHLVCKK 251 (443)
Q Consensus 184 ~~~~lIivVTPTy~R-~~Q-~a~LTRLahTL~lVpp~L~WIVVEd~--~~s---~----~ta~lLrrs-Gl~y~HL~~~~ 251 (443)
.+...|.+|-|-..| ... ...|...+++-..-..+++=+||=.. ..+ . .+.++-++. +..+.-+.++
T Consensus 244 ~~~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~- 322 (499)
T PF05679_consen 244 TESTRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVK- 322 (499)
T ss_pred cCCCEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEec-
Confidence 345899999999998 333 22455555553333445555555432 111 2 223333443 3445555554
Q ss_pred CCCCCCchhhhHHHHHHHHH-HhhCCCeEEEEecCCCcccHHHHHHhhc--cceeeee-EeeeecCCCccceeec-eeec
Q 013414 252 NLTDVKDTRVHQRNVALSHI-ENHHLDGIVYFADENNIYLTDLFEELRQ--IRRFGTW-TVGKLSENKMDTILEG-PICN 326 (443)
Q Consensus 252 ~~~~~~~rgv~QRN~AL~~I-r~h~l~GVVYFADDDNtYdl~LFdemR~--ir~vGvW-PVGlvg~~~~k~~vEG-Pvc~ 326 (443)
.|.--|-.||+-. +....+-+|+|+|-|=.+..++++.+|. |+..-|+ ||.+.--+. ++...+ |--.
T Consensus 323 -------~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g~qvy~PI~Fs~y~p-~~~~~~~~~~~ 394 (499)
T PF05679_consen 323 -------TGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPGKQVYFPIVFSQYNP-DIVYAGKPPEP 394 (499)
T ss_pred -------CCCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcCcEEEEeeeccccCC-cccccCCCCcc
Confidence 1334455666544 3457789999999999999999999886 6655454 887753221 121111 1111
Q ss_pred CCeEEEEEeCCCCCCCCCCccccceeeeeeccccCCCCCCCCCCcccccccccCCCcchhhHHHHhccCccceeec-CCC
Q 013414 327 GTRVIGWHVNEPRERFRRFHAEMSGFAFNSTILWDPKRWHRPTLEPIRQVVTVKDGFQASTFVEQIVEDESQMEGL-LEE 405 (443)
Q Consensus 327 ~~kVvGW~t~~~~~~~R~fpIDMAGFAfNs~lLwdp~~w~rP~~~~~~~~~~~k~G~qEs~FL~qLv~d~~~lEpl-a~~ 405 (443)
++..++-.++ --|.|..+|++| .+++++---.. .......+-|.+..++.+.++....+|+-+ +.+
T Consensus 395 ~~~~i~~~~G----~w~~~gfg~~~~-YksDy~~~~~~--------~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~e 461 (499)
T PF05679_consen 395 DQFDISKDTG----FWRRFGFGMVCF-YKSDYMRIRGG--------GFDLSIRGWGGEDVDLYDKFLKSGHKLHVFRAVE 461 (499)
T ss_pred ccCccCCCCC----ccccCCCceEEE-Ehhhhhhhccc--------ccccccccccccHHHHHHHHHhCCCceEEEEccC
Confidence 1111211111 125667777555 23333211000 000011233333346777777533245543 445
Q ss_pred CCEEEEeeCCCCCCCCC
Q 013414 406 CSRIMAWLLPLESSNAF 422 (443)
Q Consensus 406 CskVLVWHtrte~p~l~ 422 (443)
-.=+..||.+.=.|.+.
T Consensus 462 p~L~h~yh~~~C~~~l~ 478 (499)
T PF05679_consen 462 PGLVHRYHPKHCDPSLS 478 (499)
T ss_pred CCeEEEecccCCCCCCC
Confidence 56789999998887654
No 53
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=52.33 E-value=5 Score=45.28 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=31.9
Q ss_pred CCccccCCccchhhHHhhhhHHHHHHHHHhhhcccCcc
Q 013414 69 SRPLERARPKAQVWRRALFHFLICFVVGVFIGLTPFVS 106 (443)
Q Consensus 69 ~~~~er~k~~~~~w~r~~~h~~lcF~~G~f~G~~p~~~ 106 (443)
-+-.+|+..|.++|+...++..+||++|+++|+.-++-
T Consensus 68 f~e~~r~~~k~~~~~y~~~kW~~~~lIGi~TgLva~fi 105 (762)
T KOG0474|consen 68 FLEDWRTRDKKKGRRYEAVKWMVCFLIGICTGLVALFI 105 (762)
T ss_pred HHHHHHhhcccceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888889999999999999999999987654
No 54
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=50.46 E-value=2.1e+02 Score=33.74 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=62.9
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhhhccC-C-CCceEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCchhhh
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTLRMV-Q-PPLLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKDTRVH 262 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahTL~lV-p-p~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~ 262 (443)
..|.+=||-|||+.+.-...-| +...+.+- | .++.=|||.|++ ++.+.++.++.|+.|.+- ++| ......
T Consensus 258 ~~P~VsViIPtYNE~~~vv~~t-I~a~l~~dYP~~k~EViVVDDgS-~D~t~~la~~~~v~yI~R--~~n----~~gKAG 329 (852)
T PRK11498 258 LWPTVDIFVPTYNEDLNVVKNT-IYASLGIDWPKDKLNIWILDDGG-REEFRQFAQEVGVKYIAR--PTH----EHAKAG 329 (852)
T ss_pred CCCcEEEEEecCCCcHHHHHHH-HHHHHhccCCCCceEEEEEeCCC-ChHHHHHHHHCCcEEEEe--CCC----CcchHH
Confidence 4578999999999764322111 22222221 2 135556777754 567888999988876542 222 112245
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH
Q 013414 263 QRNVALSHIENHHLDGIVYFADENNIYLTDLFEE 296 (443)
Q Consensus 263 QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFde 296 (443)
..|.||++.+ .=+|.|-|.|..-+-+..++
T Consensus 330 nLN~aL~~a~----GEyIavlDAD~ip~pdfL~~ 359 (852)
T PRK11498 330 NINNALKYAK----GEFVAIFDCDHVPTRSFLQM 359 (852)
T ss_pred HHHHHHHhCC----CCEEEEECCCCCCChHHHHH
Confidence 7899998742 23888999999998888776
No 55
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=49.89 E-value=13 Score=29.74 Aligned_cols=32 Identities=31% Similarity=0.606 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCc--cc----HHHHHHhhc
Q 013414 264 RNVALSHIENHHLDGIVYFADENNI--YL----TDLFEELRQ 299 (443)
Q Consensus 264 RN~AL~~Ir~h~l~GVVYFADDDNt--Yd----l~LFdemR~ 299 (443)
=-.||+|| .+.|+||.|-.++ |+ +.||+|||.
T Consensus 6 ai~AL~hL----~~~ilfi~D~Se~CGysie~Q~~L~~~ik~ 43 (58)
T PF06858_consen 6 AITALAHL----ADAILFIIDPSEQCGYSIEEQLSLFKEIKP 43 (58)
T ss_dssp HHHGGGGT-----SEEEEEE-TT-TTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhh----cceEEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 34566665 4579999999988 75 468999986
No 56
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=42.88 E-value=25 Score=39.25 Aligned_cols=42 Identities=26% Similarity=0.613 Sum_probs=33.0
Q ss_pred CCCCchhhhHHH-------HHHHHHHhhCCCeEEEEecCCCc--ccH----HHHHHhhc
Q 013414 254 TDVKDTRVHQRN-------VALSHIENHHLDGIVYFADENNI--YLT----DLFEELRQ 299 (443)
Q Consensus 254 ~~~~~rgv~QRN-------~AL~~Ir~h~l~GVVYFADDDNt--Ydl----~LFdemR~ 299 (443)
+.+-++-.++|| .||.|||. .|+||.|-... |++ .||+.|+-
T Consensus 223 PGILD~plEdrN~IEmqsITALAHLra----aVLYfmDLSe~CGySva~QvkLfhsIKp 277 (620)
T KOG1490|consen 223 PGILDRPEEDRNIIEMQIITALAHLRS----AVLYFMDLSEMCGYSVAAQVKLYHSIKP 277 (620)
T ss_pred ccccCcchhhhhHHHHHHHHHHHHhhh----hheeeeechhhhCCCHHHHHHHHHHhHH
Confidence 345567778887 68999875 89999999987 764 68998874
No 57
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=42.72 E-value=82 Score=26.19 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=33.7
Q ss_pred eEEEEccCCCcchhhhhHHHHHhhh--ccCCCCceEEEEecCC----CCHHHHHHHHhcCCceeEeeec
Q 013414 188 LIIIVTPTDAQPFQAYYLNRLAHTL--RMVQPPLLWIVVEMTS----QSEETADVLRRTGVMYRHLVCK 250 (443)
Q Consensus 188 lIivVTPTy~R~~Q~a~LTRLahTL--~lVpp~L~WIVVEd~~----~s~~ta~lLrrsGl~y~HL~~~ 250 (443)
-+|+|+|.- ..+|.|||+-| ||+| |.|++.. ....+.++|++.|+.++.+..+
T Consensus 3 ~vl~I~~~~-----~~~~a~l~~~iGNrH~p-----~~i~~~~l~v~~d~~l~~~L~~lg~~~~~~~~~ 61 (87)
T PF05194_consen 3 EVLVIRPRD-----PKEMARLAYHIGNRHWP-----LFIEEDELYVPYDHVLEELLRKLGLEVEKVERP 61 (87)
T ss_dssp EEEEEE-SS-----HHHHHHHHHHHHHTT-------EEEETTEEEEE--HHHHHHHHHTT-EEEEEEEE
T ss_pred eEEEEeCCC-----HHHHHHHHHHHcCCccc-----eEEcCCEEEecCcHHHHHHHHHCCCccEEeeec
Confidence 467888843 44566899988 5665 4455442 2566799999999999888654
No 58
>cd00571 UreE UreE urease accessory protein. UreE is a metallochaperone assisting the insertion of a Ni2+ ion in the active site of urease, an important step in the in vivo assembly of urease, an enzyme that hydrolyses urea into ammonia and carbamic acid. The C-terminal region of UreE contains a histidine rich nickel binding site.
Probab=42.64 E-value=85 Score=28.38 Aligned_cols=53 Identities=32% Similarity=0.486 Sum_probs=36.0
Q ss_pred ceEEEEccCCCcchhhhhHHHHHhhh--ccCCCCceEEEEecCC----CCHHHHHHHHhcCCceeEeee
Q 013414 187 KLIIIVTPTDAQPFQAYYLNRLAHTL--RMVQPPLLWIVVEMTS----QSEETADVLRRTGVMYRHLVC 249 (443)
Q Consensus 187 ~lIivVTPTy~R~~Q~a~LTRLahTL--~lVpp~L~WIVVEd~~----~s~~ta~lLrrsGl~y~HL~~ 249 (443)
.-+++|||.. ..+|.|+|+-| +|+| +-+++.. ....+.++|++.|++|++..+
T Consensus 76 e~vl~i~~~~-----~~~~~~l~y~lGNrH~p-----l~i~~~~l~v~~D~~l~~ml~~lg~~~~~~~~ 134 (136)
T cd00571 76 EDVLVITPKD-----MLELARLAYHLGNRHVP-----LQIEEDELYIPYDHVLEDMLRKLGVRYERVER 134 (136)
T ss_pred CcEEEEEcCC-----HHHHHHHHHHhcCCccc-----eEEeCCEEEEcCCHHHHHHHHHcCCeeEEEec
Confidence 3456677753 55788999988 4554 2234331 256789999999999988754
No 59
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=40.49 E-value=1.9e+02 Score=28.59 Aligned_cols=104 Identities=20% Similarity=0.106 Sum_probs=60.5
Q ss_pred cceEEEEccCCCc-chhhhhHHHHHhhhccCCCCceEEEEecCCCCHHHHHHHHhc-CCceeEeeecCCCCCCCchhhhH
Q 013414 186 RKLIIIVTPTDAQ-PFQAYYLNRLAHTLRMVQPPLLWIVVEMTSQSEETADVLRRT-GVMYRHLVCKKNLTDVKDTRVHQ 263 (443)
Q Consensus 186 ~~lIivVTPTy~R-~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~~s~~ta~lLrrs-Gl~y~HL~~~~~~~~~~~rgv~Q 263 (443)
.+-|.+|.+||.| ..+..-|..|++.--..- =||+-|...++.+.+.++.- .-..+.+.-+.|.- -..|.
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~----~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~NlG--~agg~-- 73 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYPDD----VIVVVDNGSTDGSLEALKARFFPNVRLIENGENLG--FAGGF-- 73 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCCCc----EEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCCcc--chhhh--
Confidence 4678999999998 566667776666555443 23344444455566666665 22233332223321 12332
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 264 RNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 264 RN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
|.+.++.-...-+ .|+|.++|=..+.+..++|.+
T Consensus 74 -n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~ 107 (305)
T COG1216 74 -NRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLK 107 (305)
T ss_pred -hHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHH
Confidence 3455555433222 788999997778888888654
No 60
>PF14773 VIGSSK: Helicase-associated putative binding domain, C-terminal
Probab=40.03 E-value=19 Score=29.19 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=18.7
Q ss_pred CCHHHHHHHHhcCCceeEeeec
Q 013414 229 QSEETADVLRRTGVMYRHLVCK 250 (443)
Q Consensus 229 ~s~~ta~lLrrsGl~y~HL~~~ 250 (443)
....+..||...||.|+|.+..
T Consensus 24 k~d~I~aiL~~~gV~YtH~N~e 45 (61)
T PF14773_consen 24 KHDPIQAILASAGVEYTHSNQE 45 (61)
T ss_pred cccHHHHHHhhcceeeeecCcc
Confidence 3568899999999999999753
No 61
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=39.57 E-value=42 Score=33.14 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhh---CCCeEEEEecCCCcccHHHHHHhhccc
Q 013414 263 QRNVALSHIENH---HLDGIVYFADENNIYLTDLFEELRQIR 301 (443)
Q Consensus 263 QRN~AL~~Ir~h---~l~GVVYFADDDNtYdl~LFdemR~ir 301 (443)
..=.||+.|-++ ..+.|+||+||.| |++.|..++...
T Consensus 174 ~Kg~al~~ll~~~~~~~~~v~~~GD~~n--D~~mf~~~~~~~ 213 (266)
T PRK10187 174 NKGEAIAAFMQEAPFAGRTPVFVGDDLT--DEAGFAVVNRLG 213 (266)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEcCCcc--HHHHHHHHHhcC
Confidence 344566666555 3567999999888 999999886533
No 62
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=36.25 E-value=13 Score=33.85 Aligned_cols=19 Identities=37% Similarity=0.807 Sum_probs=14.3
Q ss_pred CCCeEEEEe-cCCCcccHHH
Q 013414 275 HLDGIVYFA-DENNIYLTDL 293 (443)
Q Consensus 275 ~l~GVVYFA-DDDNtYdl~L 293 (443)
...|++||| |||++|+..+
T Consensus 99 s~kG~avFaS~d~sVy~a~~ 118 (124)
T PF14263_consen 99 SVKGIAVFASDDDSVYQASL 118 (124)
T ss_dssp EEEEEEEEEESSSGGGGEEE
T ss_pred ceeEEEEEeeCChhhhccce
Confidence 357999998 5588998653
No 63
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.86 E-value=41 Score=33.86 Aligned_cols=72 Identities=10% Similarity=-0.016 Sum_probs=55.6
Q ss_pred EEecCCCCHHHHHHHHhcCCceeEeeecCCCCC-CCchhhhHHHHHHHHHHhh-CCCeEEEEecCCCcccHHHHHH
Q 013414 223 VVEMTSQSEETADVLRRTGVMYRHLVCKKNLTD-VKDTRVHQRNVALSHIENH-HLDGIVYFADENNIYLTDLFEE 296 (443)
Q Consensus 223 VVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~-~~~rgv~QRN~AL~~Ir~h-~l~GVVYFADDDNtYdl~LFde 296 (443)
+||..++.-.+|+-+++.|+.|..=+.-+|.|. ..-+|.-. .+|+||.+. +.-|+-++.|--+..++++..+
T Consensus 24 ~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~--~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e 97 (250)
T PRK13397 24 SIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGL--QGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD 97 (250)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCH--HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh
Confidence 677777778899999999998776665556553 34566654 399999887 4679999999888888888776
No 64
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.12 E-value=20 Score=32.24 Aligned_cols=14 Identities=43% Similarity=0.755 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhccc
Q 013414 90 LICFVVGVFIGLTP 103 (443)
Q Consensus 90 ~lcF~~G~f~G~~p 103 (443)
++||++|+.+|++=
T Consensus 3 ~i~lvvG~iiG~~~ 16 (128)
T PF06295_consen 3 IIGLVVGLIIGFLI 16 (128)
T ss_pred HHHHHHHHHHHHHH
Confidence 57888888888863
No 65
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.99 E-value=53 Score=33.04 Aligned_cols=73 Identities=14% Similarity=0.034 Sum_probs=54.9
Q ss_pred EEecCCCCHHHHHHHHhcCCceeEeeecCCCCC-CCchhhhHHHHHHHHHHhh-CCCeEEEEecCCCcccHHHHHHh
Q 013414 223 VVEMTSQSEETADVLRRTGVMYRHLVCKKNLTD-VKDTRVHQRNVALSHIENH-HLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 223 VVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~-~~~rgv~QRN~AL~~Ir~h-~l~GVVYFADDDNtYdl~LFdem 297 (443)
+||+.++.-++|+-|+..|+.+.-.++-+|.|. ..-+|.- +.+|+++++. +.-|+-++.+--+..++++++++
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g--~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~ 110 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLG--EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY 110 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcH--HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh
Confidence 356666677889999999998777766666554 3334433 7888888876 56799999998888888888876
No 66
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=33.75 E-value=67 Score=27.57 Aligned_cols=69 Identities=20% Similarity=0.210 Sum_probs=46.6
Q ss_pred hhhHHHHHhhhccCCCCceEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHh-hCCCeEE
Q 013414 202 AYYLNRLAHTLRMVQPPLLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIEN-HHLDGIV 280 (443)
Q Consensus 202 ~a~LTRLahTL~lVpp~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~-h~l~GVV 280 (443)
+.++..++..|...--.| ..|+-|+++|++.|++.+.+.-... | .+-..++.|++ .+.+-||
T Consensus 11 K~~~~~~a~~l~~~G~~i--------~AT~gTa~~L~~~Gi~~~~v~~~~~-------~--g~~~i~~~i~~~g~idlVI 73 (112)
T cd00532 11 KAMLVDLAPKLSSDGFPL--------FATGGTSRVLADAGIPVRAVSKRHE-------D--GEPTVDAAIAEKGKFDVVI 73 (112)
T ss_pred HHHHHHHHHHHHHCCCEE--------EECcHHHHHHHHcCCceEEEEecCC-------C--CCcHHHHHHhCCCCEEEEE
Confidence 455666666666443111 1467899999999999877753211 0 23457899999 9999999
Q ss_pred EEecCCC
Q 013414 281 YFADENN 287 (443)
Q Consensus 281 YFADDDN 287 (443)
.|.|..+
T Consensus 74 n~~~~~~ 80 (112)
T cd00532 74 NLRDPRR 80 (112)
T ss_pred EcCCCCc
Confidence 9998444
No 67
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=33.15 E-value=56 Score=31.91 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=41.3
Q ss_pred ceEEEEecCCC--CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhh---CCCeEEEEecCCCcccHHH
Q 013414 219 LLWIVVEMTSQ--SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENH---HLDGIVYFADENNIYLTDL 293 (443)
Q Consensus 219 L~WIVVEd~~~--s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h---~l~GVVYFADDDNtYdl~L 293 (443)
+.+.|-++... ...+...|+..|+...-+......-+.-|.+ ..+-.||+||.+. ..+-||.++|..| |+++
T Consensus 120 ~sy~~~~~~~~~~~~~i~~~l~~~~l~~~~i~s~~~~ldilP~~-a~K~~Al~~L~~~~~~~~~~vl~aGDSgN--D~~m 196 (247)
T PF05116_consen 120 ISYYVDPDDSADILEEIRARLRQRGLRVNVIYSNGRDLDILPKG-ASKGAALRYLMERWGIPPEQVLVAGDSGN--DLEM 196 (247)
T ss_dssp ECEEEETTSHCHHHHHHHHHHHCCTCEEEEEECTCCEEEEEETT--SHHHHHHHHHHHHT--GGGEEEEESSGG--GHHH
T ss_pred EEEEEecccchhHHHHHHHHHHHcCCCeeEEEccceeEEEccCC-CCHHHHHHHHHHHhCCCHHHEEEEeCCCC--cHHH
Confidence 44555444322 2456677777777643332111111222222 3488999999876 3456777777777 8888
Q ss_pred HH
Q 013414 294 FE 295 (443)
Q Consensus 294 Fd 295 (443)
|.
T Consensus 197 L~ 198 (247)
T PF05116_consen 197 LE 198 (247)
T ss_dssp HC
T ss_pred Hc
Confidence 83
No 68
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=32.15 E-value=3.3e+02 Score=27.99 Aligned_cols=125 Identities=17% Similarity=0.081 Sum_probs=70.5
Q ss_pred cceEEEE--ccCCCcchhhhhHHHHHhhhccCCCCceEEEEecCC--CCHHHHHHHHhcCCceeEeeecCCCCC----C-
Q 013414 186 RKLIIIV--TPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTS--QSEETADVLRRTGVMYRHLVCKKNLTD----V- 256 (443)
Q Consensus 186 ~~lIivV--TPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~--~s~~ta~lLrrsGl~y~HL~~~~~~~~----~- 256 (443)
-+.||+- |||+-++.+...|.+..+.+ .+.+.+ -|-+|... -+++..+.|++.|+...++++..-.+. .
T Consensus 52 ~~~i~~gGGtps~l~~~~l~~L~~~i~~~-~~~~~~-eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~ 129 (374)
T PRK05799 52 IKSIFIGGGTPTYLSLEALEILKETIKKL-NKKEDL-EFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLG 129 (374)
T ss_pred eeEEEECCCcccCCCHHHHHHHHHHHHhC-CCCCCC-EEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcC
Confidence 3566664 99988777655554444332 233233 45677533 478999999999999999998642221 1
Q ss_pred CchhhhHHHHHHHHHHhhCCCeE---EEEecCCCc-----ccHHHHHHhhccceeeeeEeeeecC
Q 013414 257 KDTRVHQRNVALSHIENHHLDGI---VYFADENNI-----YLTDLFEELRQIRRFGTWTVGKLSE 313 (443)
Q Consensus 257 ~~rgv~QRN~AL~~Ir~h~l~GV---VYFADDDNt-----Ydl~LFdemR~ir~vGvWPVGlvg~ 313 (443)
+.....+-..|++.+++...+-| +.|+=.+-+ -++++..++ .+..++..+.-..-+
T Consensus 130 R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~~l-~~~~is~y~l~~~pg 193 (374)
T PRK05799 130 RIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVVEL-NPEHISCYSLIIEEG 193 (374)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhc-CCCEEEEeccEecCC
Confidence 11234566678888888755422 222211222 233344443 245666666554433
No 69
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=30.77 E-value=2.8e+02 Score=28.59 Aligned_cols=92 Identities=13% Similarity=0.045 Sum_probs=59.5
Q ss_pred CcceEEEE--ccCCCcchhhhhHHHHHhhhccCCCCceEEEEecCC--CCHHHHHHHHhcCCceeEeeecCCCCCC----
Q 013414 185 SRKLIIIV--TPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTS--QSEETADVLRRTGVMYRHLVCKKNLTDV---- 256 (443)
Q Consensus 185 ~~~lIivV--TPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~--~s~~ta~lLrrsGl~y~HL~~~~~~~~~---- 256 (443)
....||+- |||.-.+.|..+|.....-..-+.++. -|-+|... -+.+..+.|++.|+...+|++..-.+..
T Consensus 59 ~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~-e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l 137 (375)
T PRK05628 59 PVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGA-EVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVL 137 (375)
T ss_pred ceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCC-EEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc
Confidence 45678875 999888877776665554433333233 57788533 4788899999999999999986432211
Q ss_pred -CchhhhHHHHHHHHHHhhCCC
Q 013414 257 -KDTRVHQRNVALSHIENHHLD 277 (443)
Q Consensus 257 -~~rgv~QRN~AL~~Ir~h~l~ 277 (443)
+.....+=..|++.+++...+
T Consensus 138 ~R~~s~~~~~~a~~~l~~~g~~ 159 (375)
T PRK05628 138 DRTHTPGRAVAAAREARAAGFE 159 (375)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC
Confidence 122234444577788876554
No 70
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=29.49 E-value=3e+02 Score=29.23 Aligned_cols=92 Identities=15% Similarity=0.017 Sum_probs=57.2
Q ss_pred ceEEE--EccCCCcchhhhhHHHHHhhhccCCCCceEEEEecCC--CCHHHHHHHHhcCCceeEeeecCCCCC---CCch
Q 013414 187 KLIII--VTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTS--QSEETADVLRRTGVMYRHLVCKKNLTD---VKDT 259 (443)
Q Consensus 187 ~lIiv--VTPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~--~s~~ta~lLrrsGl~y~HL~~~~~~~~---~~~r 259 (443)
..||+ =|||.--+.|..+|.........+.+.-..|-+|... -+.+..+.|++.|+....|++..-.+. .-.|
T Consensus 93 ~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R 172 (430)
T PRK08208 93 ASFAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHR 172 (430)
T ss_pred eEEEEcCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCC
Confidence 34554 3899866666665555444333333213468899643 478889999999999999998642221 1112
Q ss_pred --hhhHHHHHHHHHHhhCCCe
Q 013414 260 --RVHQRNVALSHIENHHLDG 278 (443)
Q Consensus 260 --gv~QRN~AL~~Ir~h~l~G 278 (443)
...+=..|++.+++....-
T Consensus 173 ~~~~~~~~~ai~~l~~~g~~~ 193 (430)
T PRK08208 173 PQKRADVHQALEWIRAAGFPI 193 (430)
T ss_pred CCCHHHHHHHHHHHHHcCCCe
Confidence 2345556788888876543
No 71
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=28.64 E-value=4.5e+02 Score=26.41 Aligned_cols=125 Identities=19% Similarity=0.277 Sum_probs=72.0
Q ss_pred EEccCCCcchhhhhHHHH-HhhhccCCCCceEEEEecCCC--CHHHHHHHHh-cCCceeEeeecCCCCCCCchhhhHHHH
Q 013414 191 IVTPTDAQPFQAYYLNRL-AHTLRMVQPPLLWIVVEMTSQ--SEETADVLRR-TGVMYRHLVCKKNLTDVKDTRVHQRNV 266 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRL-ahTL~lVpp~L~WIVVEd~~~--s~~ta~lLrr-sGl~y~HL~~~~~~~~~~~rgv~QRN~ 266 (443)
||-|||.--.-..-+||| +.++..---+.-=|||+|++. |-++++.|.+ -|..-.-|-..++ .+| .
T Consensus 7 vilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~-----klG-----L 76 (238)
T KOG2978|consen 7 VILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTK-----KLG-----L 76 (238)
T ss_pred EEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccC-----ccc-----c
Confidence 788999865555566776 444543333466689999653 8899998886 4554444433322 122 1
Q ss_pred HHHHH--HhhCCCeEEEEecCCCcccHHHHHHhhccceeeeeEeeeecCCCccceeeceee-cCCeEEEEEeC
Q 013414 267 ALSHI--ENHHLDGIVYFADENNIYLTDLFEELRQIRRFGTWTVGKLSENKMDTILEGPIC-NGTRVIGWHVN 336 (443)
Q Consensus 267 AL~~I--r~h~l~GVVYFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~k~~vEGPvc-~~~kVvGW~t~ 336 (443)
+=+|| -+|...-.+.-+|.|=.....+--||=+..+=|.. . +|-|--. .+|-|-||.-.
T Consensus 77 gtAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~--d---------iv~GTRYa~~ggV~gW~mk 138 (238)
T KOG2978|consen 77 GTAYIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGNY--D---------IVLGTRYAGGGGVYGWDMK 138 (238)
T ss_pred hHHHHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccCc--c---------eeeeeeEcCCCceecchhh
Confidence 22333 23445556777888888777776664333322211 2 3344444 35778888753
No 72
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=27.02 E-value=48 Score=28.70 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=14.1
Q ss_pred HHhhhhHHHHHHHHHhh
Q 013414 83 RRALFHFLICFVVGVFI 99 (443)
Q Consensus 83 ~r~~~h~~lcF~~G~f~ 99 (443)
|-+++-|++||++|++.
T Consensus 3 kw~l~Lc~~SF~~G~lf 19 (95)
T PF13334_consen 3 KWVLLLCIASFCAGMLF 19 (95)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45788999999999864
No 73
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=26.60 E-value=6.2e+02 Score=26.53 Aligned_cols=106 Identities=20% Similarity=0.183 Sum_probs=59.7
Q ss_pred EEccCCCcchhhhhHHHHHhhhccCC---CCceEEEEecCCCCHHHHHHHHhcCCceeEeeecCCC-CCCC-------ch
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLRMVQ---PPLLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNL-TDVK-------DT 259 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~lVp---p~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~-~~~~-------~r 259 (443)
||=.||.||. +|.|.-..|.... .+..=||..|+.... ++++.+.-+...+|+...... .... ..
T Consensus 4 Vlv~ayNRp~---~l~r~LesLl~~~p~~~~~~liIs~DG~~~~-~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~ 79 (334)
T cd02514 4 VLVIACNRPD---YLRRMLDSLLSYRPSAEKFPIIVSQDGGYEE-VADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYY 79 (334)
T ss_pred EEEEecCCHH---HHHHHHHHHHhccccCCCceEEEEeCCCchH-HHHHHHhhccccEEEEcccccccccCcccccchhh
Confidence 4456788853 4555555555541 245667888876533 666666654444555432110 0000 01
Q ss_pred h-hhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhcc
Q 013414 260 R-VHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQI 300 (443)
Q Consensus 260 g-v~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~i 300 (443)
+ ...--.||.++-++...+-|-|-|||-.-+.++|+-|.+.
T Consensus 80 ~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~ 121 (334)
T cd02514 80 RIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQAT 121 (334)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHH
Confidence 1 1223347877766555677778899999888877655443
No 74
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=26.25 E-value=5.1e+02 Score=26.62 Aligned_cols=90 Identities=11% Similarity=0.010 Sum_probs=59.1
Q ss_pred CcceEEEE--ccCCCcchhhhhHHHHHhhhccCCCCceEEEEecCC--CCHHHHHHHHhcCCceeEeeecCCCCCC---C
Q 013414 185 SRKLIIIV--TPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTS--QSEETADVLRRTGVMYRHLVCKKNLTDV---K 257 (443)
Q Consensus 185 ~~~lIivV--TPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~--~s~~ta~lLrrsGl~y~HL~~~~~~~~~---~ 257 (443)
.-+.||+- |||.-.+.|..+|.....-. ++ .-..|-+|... -+.+..+.|++.|+....+++..-.+.. -
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~--~~-~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l 127 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPY--LS-KDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFL 127 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHh--cC-CCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc
Confidence 34678875 99988888877766555444 44 34567889643 3788899999999999999986422211 1
Q ss_pred chh--hhHHHHHHHHHHhhCCC
Q 013414 258 DTR--VHQRNVALSHIENHHLD 277 (443)
Q Consensus 258 ~rg--v~QRN~AL~~Ir~h~l~ 277 (443)
.|+ ..+=..|++.+++...+
T Consensus 128 gR~~~~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 128 GRIHSQKQIIKAIENAKKAGFE 149 (350)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC
Confidence 222 23334467777776554
No 75
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=26.17 E-value=1.7e+02 Score=25.22 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=45.6
Q ss_pred CCCCcceEEEEccCCCc---chhhhhHHHHHhhhccCCCCceEEEEecCCCCHHHHHHHHhcCCceeEee
Q 013414 182 DLVSRKLIIIVTPTDAQ---PFQAYYLNRLAHTLRMVQPPLLWIVVEMTSQSEETADVLRRTGVMYRHLV 248 (443)
Q Consensus 182 ~~~~~~lIivVTPTy~R---~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~ 248 (443)
++..+++|+.+-+|+.- ..+..+|.+|......-.-.+..|.+++.. .+.+++++.++.|.++.
T Consensus 25 ~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~---~~~~~~~~~~~~~~~~~ 91 (146)
T PF08534_consen 25 DFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDP---PVREFLKKYGINFPVLS 91 (146)
T ss_dssp GGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSH---HHHHHHHHTTTTSEEEE
T ss_pred HhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCH---HHHHHHHhhCCCceEEe
Confidence 35678889999999554 356668888877756533246777665533 38899999888888865
No 76
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.69 E-value=44 Score=27.90 Aligned_cols=17 Identities=12% Similarity=0.475 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHhhhcc
Q 013414 86 LFHFLICFVVGVFIGLT 102 (443)
Q Consensus 86 ~~h~~lcF~~G~f~G~~ 102 (443)
++-..+|+++|++.||+
T Consensus 7 il~ivl~ll~G~~~G~f 23 (71)
T COG3763 7 ILLIVLALLAGLIGGFF 23 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46678999999999964
No 77
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=25.67 E-value=1.2e+02 Score=28.73 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhh-C--CCeEEEEecCCCcccHHHHHH
Q 013414 263 QRNVALSHIENH-H--LDGIVYFADENNIYLTDLFEE 296 (443)
Q Consensus 263 QRN~AL~~Ir~h-~--l~GVVYFADDDNtYdl~LFde 296 (443)
..-.||++|.++ . .+-+++|+|+.| |++.|..
T Consensus 159 ~K~~al~~l~~~~g~~~~~~i~~GD~~n--D~~ml~~ 193 (236)
T TIGR02471 159 SKGLALRYLSYRWGLPLEQILVAGDSGN--DEEMLRG 193 (236)
T ss_pred ChHHHHHHHHHHhCCCHHHEEEEcCCcc--HHHHHcC
Confidence 345678888664 3 457999999988 6667763
No 78
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.24 E-value=39 Score=26.24 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHHhhhcccCccccc
Q 013414 85 ALFHFLICFVVGVFIGLTPFVSMNL 109 (443)
Q Consensus 85 ~~~h~~lcF~~G~f~G~~p~~~~~~ 109 (443)
..+=.++||++|+++|..-....-+
T Consensus 20 l~l~il~~f~~G~llg~l~~~~~~~ 44 (68)
T PF06305_consen 20 LGLLILIAFLLGALLGWLLSLPSRL 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788999999999866554443
No 79
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=25.12 E-value=87 Score=29.71 Aligned_cols=105 Identities=11% Similarity=0.057 Sum_probs=57.0
Q ss_pred ceEEEEccCCCcchhhhhHHHHHhhhccCCCCceEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCc--hhhhHH
Q 013414 187 KLIIIVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKD--TRVHQR 264 (443)
Q Consensus 187 ~lIivVTPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~--rgv~QR 264 (443)
..+|.|=....+..++.. -+... .++ |++.|-.+. ......++....|...|+.++.+-+..++ |++.|.
T Consensus 42 ~n~iGiE~~~~~v~~a~~---~~~~~-~l~-Nv~~~~~da---~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~ 113 (195)
T PF02390_consen 42 INFIGIEIRKKRVAKALR---KAEKR-GLK-NVRFLRGDA---RELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNP 113 (195)
T ss_dssp SEEEEEES-HHHHHHHHH---HHHHH-TTS-SEEEEES-C---TTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSH
T ss_pred CCEEEEecchHHHHHHHH---HHHhh-ccc-ceEEEEccH---HHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCc
Confidence 455666555444333321 11111 343 676653322 33566778878899999999864222222 334444
Q ss_pred HHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 265 NVALSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 265 N~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
...-.+-+--+..|.|||+=|+-.|-...-+.++.
T Consensus 114 ~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 114 EFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp HHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 43333334447899999999998887777777666
No 80
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=23.89 E-value=5.7e+02 Score=27.98 Aligned_cols=91 Identities=18% Similarity=0.079 Sum_probs=58.1
Q ss_pred cceEEEE--ccCCCcchhhhhHHHHHhhhc-cCCCCceEEEEecC---CCCHHHHHHHHhcCCceeEeeecCCCCC----
Q 013414 186 RKLIIIV--TPTDAQPFQAYYLNRLAHTLR-MVQPPLLWIVVEMT---SQSEETADVLRRTGVMYRHLVCKKNLTD---- 255 (443)
Q Consensus 186 ~~lIivV--TPTy~R~~Q~a~LTRLahTL~-lVpp~L~WIVVEd~---~~s~~ta~lLrrsGl~y~HL~~~~~~~~---- 255 (443)
-..||+- |||.-.+.|..+|........ .+. .+.=+-||.+ .-+++..+.|++.|+...+++...-...
T Consensus 219 v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~-~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~ 297 (488)
T PRK08207 219 ITTIYFGGGTPTSLTAEELERLLEEIYENFPDVK-NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKA 297 (488)
T ss_pred eeEEEEeCCCccCCCHHHHHHHHHHHHHhccccC-CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHH
Confidence 3567765 999876666555444332211 222 3444578974 2378999999999999889887642211
Q ss_pred C-CchhhhHHHHHHHHHHhhCCC
Q 013414 256 V-KDTRVHQRNVALSHIENHHLD 277 (443)
Q Consensus 256 ~-~~rgv~QRN~AL~~Ir~h~l~ 277 (443)
. +.-...+-..|++.+++...+
T Consensus 298 igR~ht~e~v~~ai~~ar~~Gf~ 320 (488)
T PRK08207 298 IGRHHTVEDIIEKFHLAREMGFD 320 (488)
T ss_pred hCCCCCHHHHHHHHHHHHhCCCC
Confidence 1 223456777888888887664
No 81
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=23.49 E-value=1.9e+02 Score=24.36 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=47.0
Q ss_pred hhhhHHHHHhhhccCCCCceEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEE
Q 013414 201 QAYYLNRLAHTLRMVQPPLLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIV 280 (443)
Q Consensus 201 Q~a~LTRLahTL~lVpp~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVV 280 (443)
.+.+|..++..|...-.+|. .++-|+++|++.|+..+-+.... ......++.|+++..+-||
T Consensus 11 ~k~~~~~~~~~l~~~G~~l~--------aT~gT~~~l~~~gi~~~~v~~~~----------~~~~~i~~~i~~~~id~vI 72 (110)
T cd01424 11 DKPEAVEIAKRLAELGFKLV--------ATEGTAKYLQEAGIPVEVVNKVS----------EGRPNIVDLIKNGEIQLVI 72 (110)
T ss_pred cHhHHHHHHHHHHHCCCEEE--------EchHHHHHHHHcCCeEEEEeecC----------CCchhHHHHHHcCCeEEEE
Confidence 45566667777666542221 46789999999999866664321 1224578899999999999
Q ss_pred EEecCCC
Q 013414 281 YFADENN 287 (443)
Q Consensus 281 YFADDDN 287 (443)
.+.++++
T Consensus 73 n~~~~~~ 79 (110)
T cd01424 73 NTPSGKR 79 (110)
T ss_pred ECCCCCc
Confidence 9987544
No 82
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=23.19 E-value=3e+02 Score=23.36 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=45.7
Q ss_pred CCcceEEEEccCCCcc---hhhhhHHHHHhhhcc-----CCCCceEEEEecCCCC-HHHHHHHHhcCCceeEeee
Q 013414 184 VSRKLIIIVTPTDAQP---FQAYYLNRLAHTLRM-----VQPPLLWIVVEMTSQS-EETADVLRRTGVMYRHLVC 249 (443)
Q Consensus 184 ~~~~lIivVTPTy~R~---~Q~a~LTRLahTL~l-----Vpp~L~WIVVEd~~~s-~~ta~lLrrsGl~y~HL~~ 249 (443)
..+++|++..+|.-.+ .+...|..+.+.+.. | .+++|-++....+ ....+++++-|..|.+|.-
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v--~~v~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~ 93 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDV--QVVFISVDPERDTPEVLKAYAKAFGPGWIGLTG 93 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCce--EEEEEEECCCCCCHHHHHHHHHHhCCCcEEEEC
Confidence 4567777777766543 677788888888864 5 4788877665344 4567889888888888854
No 83
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.98 E-value=46 Score=25.52 Aligned_cols=20 Identities=35% Similarity=0.733 Sum_probs=15.7
Q ss_pred HhhhhHHHHH--HHHHhhhccc
Q 013414 84 RALFHFLICF--VVGVFIGLTP 103 (443)
Q Consensus 84 r~~~h~~lcF--~~G~f~G~~p 103 (443)
+.++||.|-+ ++||++|++=
T Consensus 21 ~SL~HF~LT~~gll~~lv~la~ 42 (45)
T PF11688_consen 21 TSLFHFGLTAVGLLGFLVGLAY 42 (45)
T ss_pred cchhHHHHHHHHHHHHHHHHHH
Confidence 5789999876 4789988763
No 84
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=22.45 E-value=44 Score=27.33 Aligned_cols=14 Identities=29% Similarity=0.781 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhhcc
Q 013414 89 FLICFVVGVFIGLT 102 (443)
Q Consensus 89 ~~lcF~~G~f~G~~ 102 (443)
..+||++|+++||.
T Consensus 3 iilali~G~~~Gff 16 (64)
T PF03672_consen 3 IILALIVGAVIGFF 16 (64)
T ss_pred HHHHHHHHHHHHHH
Confidence 36788888888875
No 85
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=22.20 E-value=4.5e+02 Score=26.06 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=44.6
Q ss_pred CCCceEEEEecCCCCHHHHHHHHh--cCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCe---E-EEEecCCCcc
Q 013414 216 QPPLLWIVVEMTSQSEETADVLRR--TGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDG---I-VYFADENNIY 289 (443)
Q Consensus 216 pp~L~WIVVEd~~~s~~ta~lLrr--sGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~G---V-VYFADDDNtY 289 (443)
.++++|||+=+........+-|+. .+++...+.... . + ..|...-+.|+....++ + ..--|||..+
T Consensus 56 d~dF~~lv~~~~~~P~~~~~rL~~l~~~~p~~~i~~~~---~---~--~~~~~~~~~~~~~~~~~~~~~~~~RLDdDDAl 127 (234)
T PF11316_consen 56 DQDFTWLVLFDDDLPEPYRERLRDLLADYPQFRIVFRP---P---G--PHRDAMRRAINAARRDGADPVLQFRLDDDDAL 127 (234)
T ss_pred CCCeEEEEEECCCCCHHHHHHHHHHhccCCCcEEEecC---C---c--hHHHHHHHHHhhhccCCCCEEEEEEECCcchh
Confidence 468999998775544433333333 345533333221 1 1 13444445555544333 2 2335999999
Q ss_pred cHHHHHHhhccc
Q 013414 290 LTDLFEELRQIR 301 (443)
Q Consensus 290 dl~LFdemR~ir 301 (443)
+.++.+.+|+.-
T Consensus 128 ~~dFV~rlr~~a 139 (234)
T PF11316_consen 128 HRDFVARLRRAA 139 (234)
T ss_pred hHHHHHHHHHHH
Confidence 999999998764
No 86
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=21.94 E-value=1.1e+02 Score=23.08 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 262 HQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 262 ~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
..=+.++++.+++....|......+|...+++|+.+
T Consensus 45 ~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 45 KLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp HHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred hhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 445677788888889999999999999999999875
No 87
>PRK11677 hypothetical protein; Provisional
Probab=21.94 E-value=44 Score=30.76 Aligned_cols=13 Identities=54% Similarity=0.894 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcc
Q 013414 90 LICFVVGVFIGLT 102 (443)
Q Consensus 90 ~lcF~~G~f~G~~ 102 (443)
+++|++|++||++
T Consensus 7 ~i~livG~iiG~~ 19 (134)
T PRK11677 7 LIGLVVGIIIGAV 19 (134)
T ss_pred HHHHHHHHHHHHH
No 88
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=21.82 E-value=6.1e+02 Score=28.01 Aligned_cols=107 Identities=14% Similarity=0.066 Sum_probs=55.6
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhhhccCC-CCceEEEEec-CC-CCHHHHHHHHhcCCceeEe-eecCCCCCCCchh
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTLRMVQ-PPLLWIVVEM-TS-QSEETADVLRRTGVMYRHL-VCKKNLTDVKDTR 260 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahTL~lVp-p~L~WIVVEd-~~-~s~~ta~lLrrsGl~y~HL-~~~~~~~~~~~rg 260 (443)
+.|.+-||-|.|.-..=..++-+ +.|.... +++-=||+.| ++ .|....+-+.+.. +-.|+ .++.+.+. -.
T Consensus 64 ~~p~vaIlIPA~NE~~vI~~~l~--s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~-p~v~~vv~~~~gp~---~K 137 (504)
T PRK14716 64 PEKRIAIFVPAWREADVIGRMLE--HNLATLDYENYRIFVGTYPNDPATLREVDRLAARY-PRVHLVIVPHDGPT---SK 137 (504)
T ss_pred CCCceEEEEeccCchhHHHHHHH--HHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHC-CCeEEEEeCCCCCC---CH
Confidence 47788899999986543333222 1232222 3564444444 32 2333333333222 21232 23322221 12
Q ss_pred hhHHHHHHHHHHhh-CCC----eEEEEecCCCcccHHHHHHh
Q 013414 261 VHQRNVALSHIENH-HLD----GIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 261 v~QRN~AL~~Ir~h-~l~----GVVYFADDDNtYdl~LFdem 297 (443)
...=|.|++++++. ... -+|.+-|-|+.-+.+.+..|
T Consensus 138 a~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~ 179 (504)
T PRK14716 138 ADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLY 179 (504)
T ss_pred HHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHH
Confidence 34567788887542 223 48888999999887776654
No 89
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=21.37 E-value=54 Score=31.38 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHhhhcccC
Q 013414 86 LFHFLICFVVGVFIGLTPF 104 (443)
Q Consensus 86 ~~h~~lcF~~G~f~G~~p~ 104 (443)
++-.++||++|+++|++=.
T Consensus 3 ii~~i~~~~vG~~~G~~~~ 21 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVR 21 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556889999999998753
No 90
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=20.67 E-value=5.3e+02 Score=26.55 Aligned_cols=93 Identities=20% Similarity=0.117 Sum_probs=57.0
Q ss_pred cceEEE--EccCCCcchhhhhHHHHHhhhccCCCCceEEEEecCC--CCHHHHHHHHhcCCceeEeeecCCCCC-----C
Q 013414 186 RKLIII--VTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTS--QSEETADVLRRTGVMYRHLVCKKNLTD-----V 256 (443)
Q Consensus 186 ~~lIiv--VTPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~--~s~~ta~lLrrsGl~y~HL~~~~~~~~-----~ 256 (443)
-+.||+ =|||.-.+.+..+|.+..+-.-.+.+..- |-+|... -+.+..+.|++.|+...++++..-.+. -
T Consensus 52 i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~e-it~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~ 130 (377)
T PRK08599 52 LKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEE-FTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIG 130 (377)
T ss_pred eeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCE-EEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC
Confidence 345665 48886555555555444433322332223 3557532 478899999999999999988642221 1
Q ss_pred CchhhhHHHHHHHHHHhhCCCeE
Q 013414 257 KDTRVHQRNVALSHIENHHLDGI 279 (443)
Q Consensus 257 ~~rgv~QRN~AL~~Ir~h~l~GV 279 (443)
+.....+...|++.+++.....|
T Consensus 131 r~~~~~~~~~~i~~l~~~g~~~v 153 (377)
T PRK08599 131 RTHNEEDVYEAIANAKKAGFDNI 153 (377)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcE
Confidence 22335677888999988765543
No 91
>COG1395 Predicted transcriptional regulator [Transcription]
Probab=20.66 E-value=1.4e+02 Score=31.27 Aligned_cols=52 Identities=27% Similarity=0.200 Sum_probs=38.3
Q ss_pred cchhhhhHHHHHhhhccCCCCceEEEE-ecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCC
Q 013414 198 QPFQAYYLNRLAHTLRMVQPPLLWIVV-EMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHL 276 (443)
Q Consensus 198 R~~Q~a~LTRLahTL~lVpp~L~WIVV-Ed~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l 276 (443)
...|+.+|.+||+.|.-.| ||| +-... - --.
T Consensus 54 ~~e~a~eLkkla~~l~asp-----ivVg~r~~~------------------------~-------------------~LE 85 (313)
T COG1395 54 SRETAEELKKLAKSLLASP-----IVVGLRTKN------------------------E-------------------PLE 85 (313)
T ss_pred CHHHHHHHHHHHHHhCCCc-----eEEEEecCC------------------------C-------------------ccc
Confidence 6899999999999999998 443 22110 0 014
Q ss_pred CeEEEEecCCCcccHHHHHHh
Q 013414 277 DGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 277 ~GVVYFADDDNtYdl~LFdem 297 (443)
+||||..++=..-+++=|..+
T Consensus 86 ~GVVY~R~gV~~vs~~Tf~~~ 106 (313)
T COG1395 86 DGVVYERYGVPAVSPETFYDY 106 (313)
T ss_pred cceEEEecCceeeCHHHHHHH
Confidence 689998888888888888875
No 92
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=20.33 E-value=2.4e+02 Score=24.46 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=27.3
Q ss_pred CCeEEEEecC-CCcccHHHH--HHhhccceeeeeEeeeec
Q 013414 276 LDGIVYFADE-NNIYLTDLF--EELRQIRRFGTWTVGKLS 312 (443)
Q Consensus 276 l~GVVYFADD-DNtYdl~LF--demR~ir~vGvWPVGlvg 312 (443)
..-||+|.|- |+.+..+++ .++.+-+++.+|.+|+=.
T Consensus 95 ~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~ 134 (152)
T cd01462 95 KADIVLITDGYEGGVSDELLREVELKRSRVARFVALALGD 134 (152)
T ss_pred CceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecC
Confidence 3568888888 778888885 456666678999998644
Done!