Query 013414
Match_columns 443
No_of_seqs 148 out of 268
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 10:08:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v84_A Galactosylgalactosylxyl 100.0 3.6E-93 1.2E-97 689.1 19.4 234 186-435 2-253 (253)
2 2d0j_A Galactosylgalactosylxyl 100.0 1.1E-92 3.8E-97 683.5 20.1 230 186-431 2-241 (246)
3 3cu0_A Galactosylgalactosylxyl 100.0 1.3E-92 4.5E-97 692.2 17.0 239 182-437 16-279 (281)
4 1qg8_A Protein (spore coat pol 96.6 0.014 4.9E-07 52.4 10.6 103 187-297 1-109 (255)
5 3bcv_A Putative glycosyltransf 96.0 0.039 1.3E-06 49.0 9.9 97 185-298 3-106 (240)
6 3f1y_A Mannosyl-3-phosphoglyce 95.4 0.03 1E-06 56.4 7.8 106 186-297 93-201 (387)
7 4fix_A UDP-galactofuranosyl tr 94.6 0.11 3.7E-06 55.9 9.7 105 184-297 177-289 (657)
8 3ckj_A Putative uncharacterize 94.2 0.14 4.9E-06 49.2 8.7 103 185-297 46-153 (329)
9 1xhb_A Polypeptide N-acetylgal 93.9 0.15 5E-06 51.1 8.5 112 185-307 27-149 (472)
10 2ffu_A Ppgalnact-2, polypeptid 93.3 0.16 5.6E-06 51.4 7.7 100 185-297 64-167 (501)
11 2z86_A Chondroitin synthase; G 93.1 0.31 1.1E-05 50.5 9.4 102 185-298 91-196 (625)
12 2z86_A Chondroitin synthase; G 92.0 0.72 2.4E-05 47.7 10.5 99 184-297 372-475 (625)
13 3l7i_A Teichoic acid biosynthe 90.0 0.057 1.9E-06 57.7 0.0 96 187-298 2-105 (729)
14 2d7i_A Polypeptide N-acetylgal 89.9 0.42 1.4E-05 49.9 6.4 100 185-296 110-216 (570)
15 1fo8_A Alpha-1,3-mannosyl-glyc 88.0 2 6.7E-05 43.0 9.5 104 191-299 6-122 (343)
16 4hg6_A Cellulose synthase subu 86.5 2.6 8.8E-05 46.1 10.1 101 185-297 138-259 (802)
17 2wvl_A Mannosyl-3-phosphoglyce 82.1 2.3 8E-05 43.7 6.8 100 187-301 53-184 (391)
18 2bo4_A Mannosylglycerate synth 79.9 13 0.00045 37.6 11.5 77 218-297 28-114 (397)
19 2fy7_A Beta-1,4-galactosyltran 73.4 11 0.00036 36.3 8.3 82 185-292 63-145 (287)
20 2j48_A Two-component sensor ki 40.4 64 0.0022 23.8 5.9 77 222-312 5-82 (119)
21 3lte_A Response regulator; str 37.3 96 0.0033 23.9 6.7 81 219-313 7-88 (132)
22 3tj8_A Urease accessory protei 35.7 69 0.0024 29.0 6.3 53 188-250 79-139 (170)
23 3cg4_A Response regulator rece 33.7 85 0.0029 24.5 6.0 81 219-313 8-89 (142)
24 3i42_A Response regulator rece 33.2 93 0.0032 23.9 6.0 79 221-313 6-85 (127)
25 2pln_A HP1043, response regula 31.2 72 0.0024 25.0 5.1 71 222-313 22-94 (137)
26 3nrf_A APAG protein; structura 29.6 13 0.00043 32.0 0.3 18 276-293 80-98 (106)
27 3grc_A Sensor protein, kinase; 29.2 1.1E+02 0.0039 23.8 6.0 81 219-313 7-88 (140)
28 2nxv_A ATP synthase subunits r 28.5 69 0.0023 29.1 5.1 33 261-297 63-95 (249)
29 2zay_A Response regulator rece 28.1 1.2E+02 0.0039 24.0 5.9 78 222-313 12-90 (147)
30 1ear_A Urease accessory protei 25.6 1.4E+02 0.0048 26.1 6.4 57 187-251 76-136 (147)
31 3t6k_A Response regulator rece 25.3 1.2E+02 0.0042 23.8 5.6 81 219-313 5-86 (136)
32 3f6p_A Transcriptional regulat 24.7 1.5E+02 0.0051 22.7 5.8 65 222-300 6-71 (120)
33 3f6c_A Positive transcription 24.0 2.3E+02 0.008 21.7 6.9 68 220-300 3-71 (134)
34 3gt7_A Sensor protein; structu 23.6 98 0.0034 25.0 4.7 68 219-300 8-76 (154)
35 2gkg_A Response regulator homo 23.3 1.2E+02 0.0041 22.8 4.9 65 222-300 9-75 (127)
36 1gmu_A UREE; metallochaperone; 23.0 1.6E+02 0.0056 25.6 6.3 54 187-250 72-131 (143)
37 1olt_A Oxygen-independent copr 22.1 1.2E+02 0.0039 30.7 5.8 87 187-277 106-204 (457)
38 1k68_A Phytochrome response re 21.9 1.2E+02 0.0042 23.2 4.8 80 222-313 6-93 (140)
39 2lpm_A Two-component response 21.1 2.1E+02 0.0071 23.8 6.3 68 219-299 9-77 (123)
40 3cnb_A DNA-binding response re 20.6 2E+02 0.007 22.1 5.9 81 220-313 10-92 (143)
No 1
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*
Probab=100.00 E-value=3.6e-93 Score=689.15 Aligned_cols=234 Identities=32% Similarity=0.524 Sum_probs=211.5
Q ss_pred cceEEEEccCCCcchhhhhHHHHHhhhccCCCCceEEEEecCC-CCHHHHHHHHhcCCceeEeeecCCC---------CC
Q 013414 186 RKLIIIVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTS-QSEETADVLRRTGVMYRHLVCKKNL---------TD 255 (443)
Q Consensus 186 ~~lIivVTPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~-~s~~ta~lLrrsGl~y~HL~~~~~~---------~~ 255 (443)
.|+||||||||+|++|+||||||||||+||| |||||||||++ .+++|+++|++|||+|+||+|+++. .+
T Consensus 2 ~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp-~L~WIVVEd~~~~t~~va~lL~~sgl~y~HL~~~~p~~~~~~~~~~~~ 80 (253)
T 1v84_A 2 LPTIHVVTPTYSRPVQKAELTRMANTLLHVP-NLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDP 80 (253)
T ss_dssp CCEEEEEEEECCSTTHHHHHHHHHHHHTTSS-SEEEEEEESSSSCCHHHHHHHHHHCCEEEEEECCCCHHHHCC------
T ss_pred CCEEEEEeCCCCccchhHHHHHHhhhhccCC-ceEEEEEeCCCCCCHHHHHHHHHcCCceEEeecCCCccccccccccCc
Confidence 6899999999999999999999999999998 99999999976 6999999999999999999998531 12
Q ss_pred CCchhhhHHHHHHHHHHhh-----CCCeEEEEecCCCcccHHHHHHhhccceeeeeEeeeecCCCccceeeceeec-CCe
Q 013414 256 VKDTRVHQRNVALSHIENH-----HLDGIVYFADENNIYLTDLFEELRQIRRFGTWTVGKLSENKMDTILEGPICN-GTR 329 (443)
Q Consensus 256 ~~~rgv~QRN~AL~~Ir~h-----~l~GVVYFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~k~~vEGPvc~-~~k 329 (443)
.++||++|||+||+|||+| +++||||||||||+||++||||||+||+|||||||++|+. .+|||+|+ +||
T Consensus 81 ~~~rg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYdl~LF~emR~i~~vgvWPVglvg~~----~~EgPv~~~~gk 156 (253)
T 1v84_A 81 RIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGL----RYEAPRVNGAGK 156 (253)
T ss_dssp -CCTTHHHHHHHHHHHHHHSCSSSCCCEEEEECCTTSEECHHHHHHHHTCSSEEECCEESCTTS----SEEEEEECTTSC
T ss_pred cccchHHHHHHHHHHHHHhcccccccceeEEEecCCCcccHHHHHHHhccCeeEEEEEEeecCc----ceecCeECCCCC
Confidence 3679999999999999984 7899999999999999999999999999999999999984 68999999 899
Q ss_pred EEEEEeCCCCCCCCCCccccceeeeeeccc-cCCCCCCCCCCcccccccccCCCcchhhHHHHhccCccceeecCCCCCE
Q 013414 330 VIGWHVNEPRERFRRFHAEMSGFAFNSTIL-WDPKRWHRPTLEPIRQVVTVKDGFQASTFVEQIVEDESQMEGLLEECSR 408 (443)
Q Consensus 330 VvGW~t~~~~~~~R~fpIDMAGFAfNs~lL-wdp~~w~rP~~~~~~~~~~~k~G~qEs~FL~qLv~d~~~lEpla~~Csk 408 (443)
|+|||+.|. +.|+|||||||||||+++| |+|++|.+ .+.+++|||||+||++|+. .++|||+|+||+|
T Consensus 157 VvGw~~~w~--~~R~fpiDmAGFA~N~~lll~~p~a~~~--------~~~~~~g~~Es~fL~~l~~-~~~lEp~~~~C~~ 225 (253)
T 1v84_A 157 VVRWKTVFD--PHRPFAIDMAGFAVNLRLILQRSQAYFK--------LRGVKGGYQESSLLRELVT-LNDLEPKAANCTK 225 (253)
T ss_dssp EEEEECSSC--TTSTTCCCGGGEEEEHHHHHHSTTCCCC--------SSSSCTTCHHHHHHHHHCC-GGGEEECHHHHTS
T ss_pred EeeeecccC--CCCCccceeeeeEEEehhhhhCCCceec--------cccCCCcchhhHHHHhhhh-HhhcEecCCCCCE
Confidence 999999987 5799999999999999965 57887643 3457899999999999984 6899999999999
Q ss_pred EEEeeCCCCCCCCC-CCcccccCCCCcc
Q 013414 409 IMAWLLPLESSNAF-YPQKWFLKNNLDV 435 (443)
Q Consensus 409 VLVWHtrte~p~l~-yp~~w~~~~~ld~ 435 (443)
||||||+||+|++. .|++|..++++|+
T Consensus 226 VlvWHtrte~p~~~~e~~~~~~~~~~e~ 253 (253)
T 1v84_A 226 ILVWHTRTEKPVLVNEGKKGFTDPSVEI 253 (253)
T ss_dssp CCEECCCBCCCCCGGGTTTCSSCTTSCC
T ss_pred EEEEecccCCcccccccccccCCCCccC
Confidence 99999999999875 5666999998875
No 2
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-92 Score=683.46 Aligned_cols=230 Identities=31% Similarity=0.529 Sum_probs=207.9
Q ss_pred cceEEEEccCCCcchhhhhHHHHHhhhccCCCCceEEEEecCCC-CHHHHHHHHhcCCceeEeeecCC--CCC-CCchhh
Q 013414 186 RKLIIIVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTSQ-SEETADVLRRTGVMYRHLVCKKN--LTD-VKDTRV 261 (443)
Q Consensus 186 ~~lIivVTPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~~-s~~ta~lLrrsGl~y~HL~~~~~--~~~-~~~rgv 261 (443)
.|+||||||||+|++|+||||||||||+||| +||||||||++. +++|+++|++|||+|+||+++++ ++. ..+||+
T Consensus 2 ~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp-~l~WIVVEd~~~~~~~v~~lL~~sgl~y~HL~~~~~~~~~~~~~prg~ 80 (246)
T 2d0j_A 2 LPTIYAITPTYSRPVQKAELTRLANTFRQVA-QLHWILVEDAAARSELVSRFLARAGLPSTHLHVPTPRRYKRPGLPRAT 80 (246)
T ss_dssp CCCEEEEEEECCSTTHHHHHHHHHHHHTTST-TEEEEEEESSSSCCHHHHHHHHHSCSCEEEEECCCCCC----CCCCCH
T ss_pred CCEEEEEeCCCCccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCCCHHHHHHHHHcCCceEEEecCCccccCCCCCcchH
Confidence 6899999999999999999999999999998 699999999875 67899999999999999999863 332 237999
Q ss_pred hHHHHHHHHHHhhCC-----CeEEEEecCCCcccHHHHHHhhccceeeeeEeeeecCCCccceeeceeecCCeEEEEEeC
Q 013414 262 HQRNVALSHIENHHL-----DGIVYFADENNIYLTDLFEELRQIRRFGTWTVGKLSENKMDTILEGPICNGTRVIGWHVN 336 (443)
Q Consensus 262 ~QRN~AL~~Ir~h~l-----~GVVYFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~k~~vEGPvc~~~kVvGW~t~ 336 (443)
+|||+||+|||+|++ +||||||||||+||++||||||+||+|||||||++|+ ..+|||+|++|||+|||+.
T Consensus 81 ~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtY~l~LF~emR~i~~vgvWPVglvg~----~~~EgPv~~~gkVvGw~t~ 156 (246)
T 2d0j_A 81 EQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGG----RRYERPLVENGKVVGWYTG 156 (246)
T ss_dssp HHHHHHHHHHHHHSCSSSCCCCEEEECCTTCEECTHHHHHHTTCSSEEECCEEEETT----EEEEEEEEETTEEEEEECS
T ss_pred HHHHHHHHHHHHhcccccCccceEEEccCCCcccHHHHHHHhhhceeeEEEEEeecC----cceecceeeCCEecceecc
Confidence 999999999999985 7999999999999999999999999999999999998 5789999999999999999
Q ss_pred CCCCCCCCCccccceeeeeecc-ccCCCCCCCCCCcccccccccCCCcchhhHHHHhccCccceeecCCCCCEEEEeeCC
Q 013414 337 EPRERFRRFHAEMSGFAFNSTI-LWDPKRWHRPTLEPIRQVVTVKDGFQASTFVEQIVEDESQMEGLLEECSRIMAWLLP 415 (443)
Q Consensus 337 ~~~~~~R~fpIDMAGFAfNs~l-Lwdp~~w~rP~~~~~~~~~~~k~G~qEs~FL~qLv~d~~~lEpla~~CskVLVWHtr 415 (443)
|. ++|+|||||||||||+++ ||+|++|.. ..++++|||||+||++|+ +.++|||+|+||+|||||||+
T Consensus 157 w~--~~R~fpiDmAGFA~N~~lll~~p~a~~~--------~~~~~~g~~Es~fL~~l~-~~~~lEp~~~~c~~VlvWhtr 225 (246)
T 2d0j_A 157 WR--ADRPFAIDMAGFAVSLQVILSNPKAVFK--------RRGSQPGMQESDFLKQIT-TVEELEPKANNCTKVLVWHTR 225 (246)
T ss_dssp SC--TTSTTCCCGGGEEEEHHHHHHCTTCCCC--------TTSSSGGGHHHHHHHTTC-CGGGCEECHHHHTCCCEECCC
T ss_pred cC--CCCcCcccceeeEeehhhhhcCcccccc--------cCCCCCCchhhHHHHHhc-cHhhceeccCCCCEEEEEecc
Confidence 87 579999999999999995 569988643 235789999999999997 457999999999999999999
Q ss_pred CCCCCCCCCcccccCC
Q 013414 416 LESSNAFYPQKWFLKN 431 (443)
Q Consensus 416 te~p~l~yp~~w~~~~ 431 (443)
||+|+++++.+-..+.
T Consensus 226 te~~~l~~e~~~~~~~ 241 (246)
T 2d0j_A 226 TEKVNLANEPKYHLDT 241 (246)
T ss_dssp BCCCCCTTCCSSSCCS
T ss_pred ccCcccccccccCCCC
Confidence 9999999998755443
No 3
>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*
Probab=100.00 E-value=1.3e-92 Score=692.21 Aligned_cols=239 Identities=30% Similarity=0.479 Sum_probs=211.0
Q ss_pred CCCCcceEEEEccCCCcchhhhhHHHHHhhhccCCCCceEEEEecCC-CCHHHHHHHHhcCCceeEeeecCCCC------
Q 013414 182 DLVSRKLIIIVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTS-QSEETADVLRRTGVMYRHLVCKKNLT------ 254 (443)
Q Consensus 182 ~~~~~~lIivVTPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~-~s~~ta~lLrrsGl~y~HL~~~~~~~------ 254 (443)
+..++|+||||||||.|++|+||||||||||+||| +||||||||++ .+++|++||++|||+|+||+++++..
T Consensus 16 ~~~~~p~IivVTPTy~R~~Q~a~LtRLa~TL~~Vp-~L~WIVVEd~~~~t~~va~lL~rsGl~y~HL~~~~p~~~~~~~~ 94 (281)
T 3cu0_A 16 PRGSHMTIYVVTPTYARLVQKAELVRLSQTLSLVP-RLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREG 94 (281)
T ss_dssp -----CEEEEEEEECCSTTHHHHHHHHHHHHTTSS-SEEEEEEESSSSCCHHHHHHHHHHCSEEEEEECCCC--------
T ss_pred cCCCCCeEEEEeCCCCCcchhHHHHHHHHHHhcCC-ceEEEEEcCCCCCCHHHHHHHHHcCCceEEeccCCCcccccccc
Confidence 34578999999999999999999999999999998 99999999975 69999999999999999999986542
Q ss_pred ---CCCchhhhHHHHHHHHHH--------hhC-----CCeEEEEecCCCcccHHHHHHhhccceeeeeEeeeecCCCccc
Q 013414 255 ---DVKDTRVHQRNVALSHIE--------NHH-----LDGIVYFADENNIYLTDLFEELRQIRRFGTWTVGKLSENKMDT 318 (443)
Q Consensus 255 ---~~~~rgv~QRN~AL~~Ir--------~h~-----l~GVVYFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~k~ 318 (443)
+.++||++|||+||+||| +|. ++||||||||||+||++||||||+||+|||||||++|+ +
T Consensus 95 dp~w~~~rg~~QRN~AL~~Ir~~~~~~~~~~~~~~~~~~GVVyFADDDNtYsl~LFdemR~ik~vgvWPVGlvgg----~ 170 (281)
T 3cu0_A 95 EPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGG----L 170 (281)
T ss_dssp ---CCCCCSHHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHHTSCSSEEECCEEEETT----E
T ss_pred ccccccchhHHHHHHHHHHHHhhccccchhccccccCCceeEEEecCCCcccHHHHHHhhhcceEeEEEeecccc----c
Confidence 256899999999999999 663 78999999999999999999999999999999999997 7
Q ss_pred eeeceeecCCeEEEEEeCCCCCCCCCCccccceeeeeecccc-CCCCCCCCCCcccccccccCCCcchhhHHHHhccCcc
Q 013414 319 ILEGPICNGTRVIGWHVNEPRERFRRFHAEMSGFAFNSTILW-DPKRWHRPTLEPIRQVVTVKDGFQASTFVEQIVEDES 397 (443)
Q Consensus 319 ~vEGPvc~~~kVvGW~t~~~~~~~R~fpIDMAGFAfNs~lLw-dp~~w~rP~~~~~~~~~~~k~G~qEs~FL~qLv~d~~ 397 (443)
.||||+|++|||+|||+.|. ++|+|||||||||||+++|| +|+++. ..++++|||||+||++|++ ++
T Consensus 171 ~vEgPvc~~gkVvGw~t~w~--~~R~fpiDMAGFA~N~~lL~~~p~a~f---------~~~~~~G~qEs~fL~~lv~-~~ 238 (281)
T 3cu0_A 171 RFEGPQVQDGRVVGFHTAWE--PSRPFPVDMAGFAVALPLLLDKPNAQF---------DSTAPRGHLESSLLSHLVD-PK 238 (281)
T ss_dssp EEEEEEEETTEEEEEECCSS--TTCSSCCCGGGEEEEHHHHHHCTTCCC---------CTTSCTTCHHHHHHTTTCC-GG
T ss_pred eeEEEEEeCCEEeeeeccCC--CCCCCccccceeEeehhhhhcCCcccc---------cCCCCCcchhhHHHHHhcc-Hh
Confidence 89999999999999999997 47999999999999999999 566532 2367899999999999974 79
Q ss_pred ceeecCCCCCEEEEeeCCCCCCCCCCCcccc-cCCCCcccc
Q 013414 398 QMEGLLEECSRIMAWLLPLESSNAFYPQKWF-LKNNLDVMA 437 (443)
Q Consensus 398 ~lEpla~~CskVLVWHtrte~p~l~yp~~w~-~~~~ld~~i 437 (443)
+|||+|+||++||||||+||+|+++++++.+ .....|..|
T Consensus 239 ~lEp~~~~c~~VlVWHtrte~p~l~~e~~~~~~g~~~~~~~ 279 (281)
T 3cu0_A 239 DLEPRAANCTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAI 279 (281)
T ss_dssp GCEECHHHHTCCCEECCCBCCCCCHHHHHHHTTTCCCCTTS
T ss_pred hcEecCCCCCEEEEEecccCCCccCcHHHHHHhCCCCCCCC
Confidence 9999999999999999999999999887733 445555544
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=96.56 E-value=0.014 Score=52.40 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=63.8
Q ss_pred ceEEEEccCCCcchhhhhHHHHHhhhc-cCCCCceEEEEecCCCCHHHHHHHHhc--CCceeEeeecCCC--CCCCchh-
Q 013414 187 KLIIIVTPTDAQPFQAYYLNRLAHTLR-MVQPPLLWIVVEMTSQSEETADVLRRT--GVMYRHLVCKKNL--TDVKDTR- 260 (443)
Q Consensus 187 ~lIivVTPTy~R~~Q~a~LTRLahTL~-lVpp~L~WIVVEd~~~s~~ta~lLrrs--Gl~y~HL~~~~~~--~~~~~rg- 260 (443)
|.|-||+|||.+.. +|.+.-..|. +--+++-.|||.|++ ++.+.+++++- .-..+.+..+... ......|
T Consensus 1 p~vSViIp~yn~~~---~l~~~l~Sl~~q~~~~~eiivvDd~S-~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~ 76 (255)
T 1qg8_A 1 PKVSVIMTSYNKSD---YVAKSISSILSQTFSDFELFIMDDNS-NEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRY 76 (255)
T ss_dssp CCEEEEEEESSCTT---THHHHHHHHHTCSCCCEEEEEEECSC-CHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHH
T ss_pred CeEEEEEEcCCCHH---HHHHHHHHHHhccCCceEEEEEECCC-CchHHHHHHHHhhcCCEEEEecccccccccccccCH
Confidence 56889999999863 3333333332 223478999999975 35667777664 2223333222000 0001234
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 261 VHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 261 v~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
...||.|++.. ..-+|.|.|+|..++.+.++++
T Consensus 77 ~~a~N~gi~~a----~g~~i~~lD~Dd~~~~~~l~~~ 109 (255)
T 1qg8_A 77 AALINQAIEMA----EGEYITYATDDNIYMPDRLLKM 109 (255)
T ss_dssp HHHHHHHHHHC----CCSEEEEEETTEEECTTHHHHH
T ss_pred HHHHHHHHHHc----CCCEEEEeCCCCccChHHHHHH
Confidence 46899999875 2348999999999988887774
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=95.97 E-value=0.039 Score=48.96 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=61.6
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhhhc-cCCCCceEEEEecCCCCHHHHHHHHh-----cCCceeEeeecCCCCCCCc
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTLR-MVQPPLLWIVVEMTSQSEETADVLRR-----TGVMYRHLVCKKNLTDVKD 258 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahTL~-lVpp~L~WIVVEd~~~s~~ta~lLrr-----sGl~y~HL~~~~~~~~~~~ 258 (443)
..|.|-||.|||.+.. +|.+.-..|. +--+++-.|||.|++.. .+.+++++ .++.+.| .+|
T Consensus 3 ~~p~vsViIp~yn~~~---~l~~~l~Sl~~q~~~~~eiIvvDd~S~d-~t~~~~~~~~~~~~~i~~i~---~~n------ 69 (240)
T 3bcv_A 3 LIPKVSVIVPIYNVEK---YLDQCVQALLAQTLSDIEIILIDDESPD-NCPKICDDYAAQYPNIKVIH---KKN------ 69 (240)
T ss_dssp CCCSEEEEEEESSCTT---THHHHHHHHHTCSSSSEEEEEEECCCSS-SHHHHHHHHHHHCSSEEEEE---CCC------
T ss_pred CCCcEEEEEecCCCHH---HHHHHHHHHHhCcCCCeEEEEEECCCCc-CHHHHHHHHHhhCCCEEEEE---CCC------
Confidence 3578999999999863 3333333332 22347899999997532 23333333 2333222 222
Q ss_pred hh-hhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhh
Q 013414 259 TR-VHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELR 298 (443)
Q Consensus 259 rg-v~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR 298 (443)
.| ...||.||++.+ .-+|.|.|+|..++.+.+++|-
T Consensus 70 ~G~~~a~N~g~~~a~----g~~i~~lD~Dd~~~~~~l~~l~ 106 (240)
T 3bcv_A 70 AGLGMACNSGLDVAT----GEYVAFCDSDDYVDSDMYMTMY 106 (240)
T ss_dssp CCHHHHHHHHHHHCC----SSEEEECCTTCCCCTTHHHHHH
T ss_pred CChHHHHHHHHHHcC----CCEEEEECCCCcCCHHHHHHHH
Confidence 23 478999998752 3589999999999988888753
No 6
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=95.43 E-value=0.03 Score=56.40 Aligned_cols=106 Identities=14% Similarity=-0.004 Sum_probs=69.6
Q ss_pred cceEEEEccCCCcchhhhh-HHHHHhhhccCCCCceEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCchh-hhH
Q 013414 186 RKLIIIVTPTDAQPFQAYY-LNRLAHTLRMVQPPLLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKDTR-VHQ 263 (443)
Q Consensus 186 ~~lIivVTPTy~R~~Q~a~-LTRLahTL~lVpp~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rg-v~Q 263 (443)
.|.|-||.|||+....... |..|...|...+.+.-.|||+|+++ +.|.+++++.+..+.+-...- .......| -..
T Consensus 93 ~p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgSt-D~T~~i~~~~~~~v~~~~~~~-i~~~~n~G~g~A 170 (387)
T 3f1y_A 93 GLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSE-DGTAGVAASHGAEVYSENELM-SGYGDAHGKGDA 170 (387)
T ss_dssp TCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCS-SSHHHHHHHTTCEEEEGGGTT-GGGCSCCSHHHH
T ss_pred CCeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCC-ccHHHHHHHhCchhcccceeE-ecCCccCCHHHH
Confidence 5789999999998655443 4555554555555789999999753 456778888776543321100 00011233 367
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCc-ccHHHHHHh
Q 013414 264 RNVALSHIENHHLDGIVYFADENNI-YLTDLFEEL 297 (443)
Q Consensus 264 RN~AL~~Ir~h~l~GVVYFADDDNt-Ydl~LFdem 297 (443)
+|.|+++. ..-+|.|.|.|.. ++.+.+++|
T Consensus 171 ~n~G~~~A----~gd~i~~lDaD~~~~~p~~L~~l 201 (387)
T 3f1y_A 171 MWRALSVT----RGDLVLYIDADTRDFRPQLAYGV 201 (387)
T ss_dssp HHHHTTTC----CSSEEEECCTTCSSCCTHHHHTT
T ss_pred HHHHHHhc----CCCEEEEEcCCCCcCCHHHHHHH
Confidence 88888765 2348999999999 888877763
No 7
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=94.59 E-value=0.11 Score=55.92 Aligned_cols=105 Identities=12% Similarity=-0.028 Sum_probs=69.7
Q ss_pred CCcceEEEEccCCCcchhhhhHHHHHhhhccCC----CCceEEEEecCCC----CHHHHHHHHhcCCceeEeeecCCCCC
Q 013414 184 VSRKLIIIVTPTDAQPFQAYYLNRLAHTLRMVQ----PPLLWIVVEMTSQ----SEETADVLRRTGVMYRHLVCKKNLTD 255 (443)
Q Consensus 184 ~~~~lIivVTPTy~R~~Q~a~LTRLahTL~lVp----p~L~WIVVEd~~~----s~~ta~lLrrsGl~y~HL~~~~~~~~ 255 (443)
+..|.|-||.|||.|... |.+.-..|..-. .+.--|||+|+++ +..+.++++..+-..+.+..+ |
T Consensus 177 ~~~pkVSVVIptYN~~~~---L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~-N--- 249 (657)
T 4fix_A 177 PGTANIAVGIPTFNRPAD---CVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQP-N--- 249 (657)
T ss_dssp CSCCCEEEECCBSSCHHH---HHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECC-C---
T ss_pred CCCCeEEEEEEecCCHHH---HHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECC-C---
Confidence 346889999999999753 333333333211 2347899999764 345677776654444444321 2
Q ss_pred CCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 256 VKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 256 ~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
.-+-..||.||++.+.....-+|.|.|||...+.+.+++|
T Consensus 250 --~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~l 289 (657)
T 4fix_A 250 --LGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRV 289 (657)
T ss_dssp --CHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHH
T ss_pred --CCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHH
Confidence 1234789999999987644458999999999988888774
No 8
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=94.21 E-value=0.14 Score=49.17 Aligned_cols=103 Identities=16% Similarity=0.035 Sum_probs=65.1
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhhhcc-C-CCCceEEEEecCCCCHHHHHHHHhcCCceeEe-eecCCCCCCCchh-
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTLRM-V-QPPLLWIVVEMTSQSEETADVLRRTGVMYRHL-VCKKNLTDVKDTR- 260 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahTL~l-V-pp~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL-~~~~~~~~~~~rg- 260 (443)
..|.|-||.|||.+... |.+.-..|.. . +.+.-.|||.|+++ +.|.+++++.+..+.+. .+-. ......|
T Consensus 46 ~~~~vSViIp~yN~~~~---l~~~l~sl~~q~~~~~~eiivVDdgS~-D~t~~~~~~~~~~~~~~~~~~~--~~~~n~G~ 119 (329)
T 3ckj_A 46 AGRTISVVLPALDEEDT---IGSVIDSISPLVDGLVDELIVLDSGST-DDTEIRAVAAGARVVSREQALP--EVPIRPGK 119 (329)
T ss_dssp TTCCEEEEEEESSCTTT---HHHHHHHHGGGBTTTBSEEEEEECSCC-SSHHHHHHHTTCEEEEHHHHCT--TSCCCCSH
T ss_pred cCCcEEEEEeeCCCHHH---HHHHHHHHHHhhCCCCcEEEEEeCCCC-chHHHHHHHhhhhhccceeeec--cCCCCCCH
Confidence 46789999999997533 3333333322 1 32478899998753 45778888877654321 1100 0111233
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCc-ccHHHHHHh
Q 013414 261 VHQRNVALSHIENHHLDGIVYFADENNI-YLTDLFEEL 297 (443)
Q Consensus 261 v~QRN~AL~~Ir~h~l~GVVYFADDDNt-Ydl~LFdem 297 (443)
...+|.|+++. ..-+|.|.|+|.. ++.+.+++|
T Consensus 120 ~~a~n~g~~~a----~gd~i~~lD~D~~~~~p~~l~~l 153 (329)
T 3ckj_A 120 GEALWRSLAAS----RGDIVVFVDSDLINPHPMFVPWL 153 (329)
T ss_dssp HHHHHHHHHHC----CCSEEEECCTTEESCCTTHHHHH
T ss_pred HHHHHHHHHhC----CCCEEEEECCCCCCcChHHHHHH
Confidence 47799999764 2349999999999 888877774
No 9
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=93.95 E-value=0.15 Score=51.11 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=67.0
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhhhcc-CCCC--ceEEEEecCCCCHHHHHHHH----hcCCceeEeeecCCCCCCC
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTLRM-VQPP--LLWIVVEMTSQSEETADVLR----RTGVMYRHLVCKKNLTDVK 257 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahTL~l-Vpp~--L~WIVVEd~~~s~~ta~lLr----rsGl~y~HL~~~~~~~~~~ 257 (443)
..|.|-||.|||.+.. ..|.+.-+.|.. .+++ .--|||+|++..+.+.++|+ +.+...+.+..++|.
T Consensus 27 ~~p~vSVIIp~yN~~~--~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~---- 100 (472)
T 1xhb_A 27 NLPTTSVVIVFHNEAW--STLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRS---- 100 (472)
T ss_dssp CCCCEEEEEEESSCCH--HHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCC----
T ss_pred CCCCeEEEEEeCCCCH--HHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCC----
Confidence 5688999999999872 233344444333 3334 37889998765443444443 333234444433331
Q ss_pred chhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH----hhccceeeeeE
Q 013414 258 DTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEE----LRQIRRFGTWT 307 (443)
Q Consensus 258 ~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFde----mR~ir~vGvWP 307 (443)
--...||.|++..+ .-+|.|.|+|..++.+.+++ +.+-..+++-|
T Consensus 101 -G~~~a~N~g~~~A~----gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~ 149 (472)
T 1xhb_A 101 -GLIRARLKGAAVSR----GQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCP 149 (472)
T ss_dssp -CHHHHHHHHHHHCC----SSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEE
T ss_pred -ChHHHHHHHHHhcc----CCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEe
Confidence 13478999998753 44999999999887766655 33334444444
No 10
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=93.35 E-value=0.16 Score=51.44 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=63.3
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhh-hccCCCCc--eEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCchh-
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHT-LRMVQPPL--LWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKDTR- 260 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahT-L~lVpp~L--~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rg- 260 (443)
..|.|-||.|||.+... .|.+.-+. +.+.++++ --|||+|++.......++++.. ..+.+..++| .|
T Consensus 64 ~~p~vSVIIp~yN~~~~--~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~-~v~vi~~~~n------~G~ 134 (501)
T 2ffu_A 64 DLPATSVVITFHNEARS--ALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIE-KVRVLRNDRR------EGL 134 (501)
T ss_dssp SCCCEEEEEEESSCCHH--HHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBT-TEEEEECSSC------CHH
T ss_pred CCCCEEEEEEeCcCcHH--HHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCC-CEEEEECCCC------cCH
Confidence 56889999999998753 33333333 33344444 7899999765544455554422 2333322222 33
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 261 VHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 261 v~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
...||.|++..+ .-+|.|.|+|..++.+.+++|
T Consensus 135 ~~A~N~G~~~A~----gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 135 MRSRVRGADAAQ----AKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp HHHHHHHHHHCC----SSEEEECCSSEEECTTCHHHH
T ss_pred HHHHHHHHHhcC----CCEEEEECCCcccCccHHHHH
Confidence 477999998752 349999999999887766663
No 11
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=93.08 E-value=0.31 Score=50.46 Aligned_cols=102 Identities=17% Similarity=0.021 Sum_probs=65.3
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhhhccC-C-CCceEEEEecCCCCHHHHHHHHhcC--CceeEeeecCCCCCCCchh
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTLRMV-Q-PPLLWIVVEMTSQSEETADVLRRTG--VMYRHLVCKKNLTDVKDTR 260 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahTL~lV-p-p~L~WIVVEd~~~s~~ta~lLrrsG--l~y~HL~~~~~~~~~~~rg 260 (443)
..|.|-||.|||.++ ..|.+.-+.|..- . .++.-|||.|++. +.+.+++++.. ...+++..+. ...--
T Consensus 91 ~~p~vsviIp~~n~~---~~l~~~l~sl~~q~~~~~~eiivvDd~s~-d~t~~~~~~~~~~~~i~~i~~~~----~~~g~ 162 (625)
T 2z86_A 91 IIDGLSIVIPTYNRA---KILAITLACLCNQKTIYDYEVIVADDGSK-ENIEEIVREFESLLNIKYVRQKD----YGYQL 162 (625)
T ss_dssp CCCCEEEEEEESSCH---HHHHHHHHHHHTCCCSSCEEEEEEEESCS-SCHHHHHHTTTTTSCEEEEEECC----CSCCH
T ss_pred cCCcEEEEEecCCcH---HHHHHHHHHHHhhccCCCeEEEEEeCCCc-hhHHHHHHHhhhcCCeEEEEeCC----CCcch
Confidence 457899999999985 3455555555433 2 3688899998653 34566666532 1233332211 01112
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhh
Q 013414 261 VHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELR 298 (443)
Q Consensus 261 v~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR 298 (443)
...||.||+.. ..-+|.|.|+|..++.+.+++|-
T Consensus 163 ~~a~N~g~~~a----~g~~v~~lD~D~~~~~~~l~~~~ 196 (625)
T 2z86_A 163 CAVRNLGLRAA----KYNYVAILDCDMAPNPLWVQSYM 196 (625)
T ss_dssp HHHHHHHHHHC----CSSEEEEECTTEEECTTHHHHHH
T ss_pred hHHHHHHHHhC----CcCEEEEECCCCCCCHHHHHHHH
Confidence 47899999875 23489999999999888877743
No 12
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=92.02 E-value=0.72 Score=47.74 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=62.3
Q ss_pred CCcceEEEEccCCCcchhhhhHHHHHhhh-ccCCCCceEEEEecCCCCHHHHHHHHhc---CCceeEeeecCCCCCCCch
Q 013414 184 VSRKLIIIVTPTDAQPFQAYYLNRLAHTL-RMVQPPLLWIVVEMTSQSEETADVLRRT---GVMYRHLVCKKNLTDVKDT 259 (443)
Q Consensus 184 ~~~~lIivVTPTy~R~~Q~a~LTRLahTL-~lVpp~L~WIVVEd~~~s~~ta~lLrrs---Gl~y~HL~~~~~~~~~~~r 259 (443)
...|.|-||+|||.+.. +|.+.-..| .+.-+++-.|||.|+++. .|.+++++. .-..+.+. .+| .
T Consensus 372 ~~~~~vsiii~~yn~~~---~l~~~l~s~~~q~~~~~eiivvdd~S~d-~t~~~~~~~~~~~~~i~~~~-~~n------~ 440 (625)
T 2z86_A 372 KRVPLVSIYIPAYNCSK---YIVRCVESALNQTITDLEVCICDDGSTD-DTLRILQEHYANHPRVRFIS-QKN------K 440 (625)
T ss_dssp CSSCSEEEEEEESSCTT---THHHHHHHHHSSSCCSEEEEEEEESCSS-SHHHHHHHHHTTCTTEEEEE-ECC------C
T ss_pred ccCCeEEEEEeCCCCHH---HHHHHHHHHHhCcCCCeEEEEEECcCCh-hHHHHHHHHHhhCCcEEEEe-CCC------C
Confidence 34678999999999853 333333333 233347899999997542 344444442 11122222 222 2
Q ss_pred h-hhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 260 R-VHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 260 g-v~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
| ...||.||+.. ..-+|.|.|+|..++.+.+++|
T Consensus 441 G~~~a~n~g~~~a----~g~~i~~ld~D~~~~~~~l~~~ 475 (625)
T 2z86_A 441 GIGSASNTAVRLC----RGFYIGQLDSDDFLEPDAVELC 475 (625)
T ss_dssp CHHHHHHHHHHHC----CSSEEEECCTTCEECTTHHHHH
T ss_pred CHHHHHHHHHHhc----CCCEEEEECCCcccChhHHHHH
Confidence 3 36799999875 2348999999999998888874
No 13
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=90.05 E-value=0.057 Score=57.73 Aligned_cols=96 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred ceEEEEccCCCcchhhhhHHHHHhhh-ccCCCCceEEEEecCCCCHHHHHHHHhc------CCceeEeeecCCCCCCCch
Q 013414 187 KLIIIVTPTDAQPFQAYYLNRLAHTL-RMVQPPLLWIVVEMTSQSEETADVLRRT------GVMYRHLVCKKNLTDVKDT 259 (443)
Q Consensus 187 ~lIivVTPTy~R~~Q~a~LTRLahTL-~lVpp~L~WIVVEd~~~s~~ta~lLrrs------Gl~y~HL~~~~~~~~~~~r 259 (443)
|.|=||.|||.+.. +|.+.-..| .+.-+++-.|||+|++ ++.|.++|++. +|.+.+. ++| .
T Consensus 2 p~vSVIIp~yN~~~---~L~~~L~Sll~Qt~~~~EIIVVDDgS-tD~t~~il~~~~~~~~~~i~~i~~--~~n------~ 69 (729)
T 3l7i_A 2 NKLTIIVTYYNAEE---YITGCLESIKQQRTQDFNLIIVNDGS-TDQSKKLMDEAIKDYDKNIRFIDL--DEN------S 69 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEcCCCHH---HHHHHHHHHHhCCCCCeEEEEEECCC-CCcHHHHHHHHHHhCCCCEEEEEC--CCC------C
Confidence 56789999999863 222222222 1222367889999976 33444455442 3333332 222 2
Q ss_pred h-hhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhh
Q 013414 260 R-VHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELR 298 (443)
Q Consensus 260 g-v~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR 298 (443)
| ...||.||+..+ .-+|.|.|+|..++.+.+++|-
T Consensus 70 G~~~arN~gi~~A~----gdyI~flD~Dd~~~p~~l~~l~ 105 (729)
T 3l7i_A 70 GHAHARNIALEEVE----TPYFMFLDADDELASYAITFYL 105 (729)
T ss_dssp ----------------------------------------
T ss_pred CHHHHHHHHHHhcc----CCEEEEECCCCCCChhHHHHHH
Confidence 3 367999998763 2389999999999998888843
No 14
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=89.95 E-value=0.42 Score=49.87 Aligned_cols=100 Identities=19% Similarity=0.139 Sum_probs=59.5
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhhhc-cCCCCc--eEEEEecCCCCHHHHHHHHhc---CCceeEeeecCCCCCCCc
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTLR-MVQPPL--LWIVVEMTSQSEETADVLRRT---GVMYRHLVCKKNLTDVKD 258 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahTL~-lVpp~L--~WIVVEd~~~s~~ta~lLrrs---Gl~y~HL~~~~~~~~~~~ 258 (443)
..|.|-||.|||.+. ...|.+.-+.|. +.++++ --|||+|++....+.++|++. .-..+.+..++|
T Consensus 110 ~~P~vSVIIp~yNe~--~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~~~~n------ 181 (570)
T 2d7i_A 110 TLPNTSIIIPFHNEG--WSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILRTKKR------ 181 (570)
T ss_dssp SCCCEEEEEEESSCC--HHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEECSSC------
T ss_pred CCCCeEEEEEECCCC--HHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEECCCC------
Confidence 468899999999986 233444333332 334454 789999976543323333331 112233322222
Q ss_pred hh-hhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH
Q 013414 259 TR-VHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEE 296 (443)
Q Consensus 259 rg-v~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFde 296 (443)
.| ...||.|++..+ .-+|.|.|+|..++.+.+++
T Consensus 182 ~G~~~A~N~G~~~A~----gd~i~fLD~D~~~~p~~L~~ 216 (570)
T 2d7i_A 182 EGLIRTRMLGASVAT----GDVITFLDSHCEANVNWLPP 216 (570)
T ss_dssp CCHHHHHHHHHHHCC----SSEEEECCSSEEECTTCSHH
T ss_pred CCHHHHHHHHHHhcC----CCEEEEEcCCccccccHHHH
Confidence 23 477999998752 35999999999876654444
No 15
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=88.04 E-value=2 Score=42.98 Aligned_cols=104 Identities=18% Similarity=0.171 Sum_probs=67.9
Q ss_pred EEccCCCcchhhhhHHHHHhhhccCCC---CceEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCC---CCCchhh---
Q 013414 191 IVTPTDAQPFQAYYLNRLAHTLRMVQP---PLLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLT---DVKDTRV--- 261 (443)
Q Consensus 191 vVTPTy~R~~Q~a~LTRLahTL~lVpp---~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~---~~~~rgv--- 261 (443)
||-+||.||. |.|.-..|+...| +..-||..|+. ..+|.++++.-+...+|+-.+.... ..+.+|.
T Consensus 6 ViI~~yNRp~----l~~~L~sL~~~~p~~~~~~iivsdDgs-~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y 80 (343)
T 1fo8_A 6 ILVIACDRST----VRRCLDKLLHYRPSAELFPIIVSQDCG-HEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGY 80 (343)
T ss_dssp EEEEESSCTT----HHHHHHHHHHHCSCTTTSCEEEEECTT-CHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHH
T ss_pred EEEEECCcHH----HHHHHHHHHhcCCCcCCcEEEEEECCC-CHHHHHHHHHcCCceEEEEcCCccccccchhhcCcccc
Confidence 6667899993 5666666665532 35677888865 6788999998776666763332111 1122342
Q ss_pred ----hHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 262 ----HQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 262 ----~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
.....||.++-+....+-|.|-|||-.-+.++|+-|-+
T Consensus 81 ~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~ 122 (343)
T 1fo8_A 81 YKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHH
Confidence 34556777765544578899999999988888765443
No 16
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=86.54 E-value=2.6 Score=46.07 Aligned_cols=101 Identities=15% Similarity=0.211 Sum_probs=63.0
Q ss_pred CcceEEEEccCCCcchhhhhHHHHHhhhcc--CCC-CceEEEEecCCC--C-----H-----------HHHHHHHhcCCc
Q 013414 185 SRKLIIIVTPTDAQPFQAYYLNRLAHTLRM--VQP-PLLWIVVEMTSQ--S-----E-----------ETADVLRRTGVM 243 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~LTRLahTL~l--Vpp-~L~WIVVEd~~~--s-----~-----------~ta~lLrrsGl~ 243 (443)
..|.|-||.|||...... |.+.-..+.. -|+ .+.-|||+|+.+ + + .+.++.++.++.
T Consensus 138 ~~P~VSViIPtyNe~~~l--L~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~ 215 (802)
T 4hg6_A 138 ELPTVDILVPSYNEPADM--LSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVV 215 (802)
T ss_dssp TCCCEEEEEECTTCCHHH--HHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred CCCcEEEEEEECCCCHHH--HHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcE
Confidence 457899999999876432 1222233322 231 288999999753 2 1 233445666776
Q ss_pred eeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 244 YRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 244 y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
|.+.. +| .......+|.|++.. ..-+|.|.|+|...+.+.+++|
T Consensus 216 ~i~~~--~~----~~GKa~alN~gl~~a----~gd~Il~lDaD~~~~pd~L~~l 259 (802)
T 4hg6_A 216 YSTRE--RN----EHAKAGNMSAALERL----KGELVVVFDADHVPSRDFLART 259 (802)
T ss_dssp EEECS--SC----CSHHHHHHHHHHHHC----CCSEEEECCTTEEECTTHHHHH
T ss_pred EEEec--CC----CCcchHHHHHHHHhc----CCCEEEEECCCCCcChHHHHHH
Confidence 65532 21 112235799999875 2358999999999998887773
No 17
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=82.05 E-value=2.3 Score=43.65 Aligned_cols=100 Identities=24% Similarity=0.265 Sum_probs=66.2
Q ss_pred ceEEEEccCCCcchhhhhHHHHHhhhccCCCCceEEEEecCCC--CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHH
Q 013414 187 KLIIIVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTSQ--SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQR 264 (443)
Q Consensus 187 ~lIivVTPTy~R~~Q~a~LTRLahTL~lVpp~L~WIVVEd~~~--s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QR 264 (443)
.-+-||.|.|.=..+ | |-..|...|.+.-+|||.|++. +..-+++|++-.- .++.+-.-+||.
T Consensus 53 ~klSIVVPvYNEe~~---l--LesVl~qi~~d~eIIlVdDGS~D~s~~e~dil~~~~~----------~~~~ri~viHQk 117 (391)
T 2wvl_A 53 EQTAIVVPTRNERLK---L--LEGVLSGIPHEALILVASNSSPDRFQMERDLLEEFAH----------LTERPALIFHQK 117 (391)
T ss_dssp TTEEEEEEESSCCHH---H--HHHHHHTSCTTSEEEEEECCCHHHHHHHHHHHHHHHH----------HTTCCEEEEETT
T ss_pred hceEEEEeccCcHHH---H--HHHHHhcCCCCceEEEEECCCCCChHhHHHHHHHHHh----------hcccceEEEecc
Confidence 445688899985532 2 7778888888999999999873 2222566664220 011122335777
Q ss_pred HHHHHHHHhhC------------------------------CCeEEEEecCCCcccHHHHHHhhccc
Q 013414 265 NVALSHIENHH------------------------------LDGIVYFADENNIYLTDLFEELRQIR 301 (443)
Q Consensus 265 N~AL~~Ir~h~------------------------------l~GVVYFADDDNtYdl~LFdemR~ir 301 (443)
|.+|...|++. ..=.|-|.|-||..+....+.++...
T Consensus 118 n~gls~Ar~~~G~~~il~~~~~vR~GKGegmi~Gi~~Ak~~~geYVgFvDADdyi~~~v~Eyvk~ya 184 (391)
T 2wvl_A 118 DPALAEALRAGGYPHPIGEDGLVRSGKAEGMILALVFAALSGRRYVGFIDADNYFPGAVWEYVRAYA 184 (391)
T ss_dssp CHHHHHHHHHTTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCBSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhcCcchhhcccccccccchHHHHHHHHHHHhcCCCEEEEEcCcCCCccCHHHHHHHHH
Confidence 88887777531 12379999999999888888776543
No 18
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=79.87 E-value=13 Score=37.58 Aligned_cols=77 Identities=12% Similarity=0.020 Sum_probs=47.8
Q ss_pred CceEEEEecCCCCHHHHHHHH--------hcCCceeEeeecCCCCCCCchhh-hHHHHHHHHHHhhCCCeEEEEecCCCc
Q 013414 218 PLLWIVVEMTSQSEETADVLR--------RTGVMYRHLVCKKNLTDVKDTRV-HQRNVALSHIENHHLDGIVYFADENNI 288 (443)
Q Consensus 218 ~L~WIVVEd~~~s~~ta~lLr--------rsGl~y~HL~~~~~~~~~~~rgv-~QRN~AL~~Ir~h~l~GVVYFADDDNt 288 (443)
..--|||+|+++ +.|+++++ ..|+....+...... ...+|. .+-+.|++|..++...-+|.|.|.|..
T Consensus 28 ~~EIIVVDDGSt-D~T~eia~~la~~~~~~~g~~vi~~~~~r~~--~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq 104 (397)
T 2bo4_A 28 RVHEVLCIGYER-DQTYEAVERAAPEISRATGTPVSVRLQERLG--TLRPGKGDGMNTALRYFLEETQWERIHFYDADIT 104 (397)
T ss_dssp TCCEEEEEESSC-CHHHHHHHHHHHHHHHHHSCCEEEEECCCCS--SSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCS
T ss_pred CeEEEEEECcCC-ccHHHHHHHhhhhcccccCCeEEEEecccCC--CCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 567799999653 33444444 557776555433110 002333 678889988763333348899999996
Q ss_pred -ccHHHHHHh
Q 013414 289 -YLTDLFEEL 297 (443)
Q Consensus 289 -Ydl~LFdem 297 (443)
|+.+...+|
T Consensus 105 ~~~P~~i~~L 114 (397)
T 2bo4_A 105 SFGPDWITKA 114 (397)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 899887775
No 19
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=73.36 E-value=11 Score=36.29 Aligned_cols=82 Identities=20% Similarity=0.142 Sum_probs=51.7
Q ss_pred CcceEEEEccCCCcchhhhh-HHHHHhhhccCCCCceEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCchhhhH
Q 013414 185 SRKLIIIVTPTDAQPFQAYY-LNRLAHTLRMVQPPLLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQ 263 (443)
Q Consensus 185 ~~~lIivVTPTy~R~~Q~a~-LTRLahTL~lVpp~L~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~Q 263 (443)
+.+.|-||.|||.|...... |..|...|..-.+++--|||+|++.. .-.....
T Consensus 63 ~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds~d~--------------------------~f~~a~a 116 (287)
T 2fy7_A 63 SPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDT--------------------------IFNRAKL 116 (287)
T ss_dssp CSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSS--------------------------CCCHHHH
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeCCCC--------------------------ccchhhh
Confidence 46889999999999766443 33444222233336777899984321 0012356
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCcccHH
Q 013414 264 RNVALSHIENHHLDGIVYFADENNIYLTD 292 (443)
Q Consensus 264 RN~AL~~Ir~h~l~GVVYFADDDNtYdl~ 292 (443)
||.|+..--++...=+|.|.|+|-...-+
T Consensus 117 ~N~G~~~al~~A~gd~i~flD~D~i~~~d 145 (287)
T 2fy7_A 117 LNVGFQEALKDYDYTCFVFSDVDLIPMND 145 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEEECTTEEESBT
T ss_pred hhhHHHHHHHhCCCCEEEEECCCcccCCC
Confidence 99988433233444589999999887665
No 20
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=40.35 E-value=64 Score=23.84 Aligned_cols=77 Identities=12% Similarity=0.038 Sum_probs=46.3
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhcc
Q 013414 222 IVVEMTSQ-SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQI 300 (443)
Q Consensus 222 IVVEd~~~-s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~i 300 (443)
+|||+... .....++|++.|..... +. .-..|+..++++..+-||.=.+..+.-.+++.++||+.
T Consensus 5 liv~~~~~~~~~l~~~l~~~g~~v~~--~~------------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~ 70 (119)
T 2j48_A 5 LLLEEEDEAATVVCEMLTAAGFKVIW--LV------------DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREH 70 (119)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEE--ES------------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHT
T ss_pred EEEeCCHHHHHHHHHHHHhCCcEEEE--ec------------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 46676543 56678889988864332 21 12468888888887777655444444556777777765
Q ss_pred ceeeeeEeeeec
Q 013414 301 RRFGTWTVGKLS 312 (443)
Q Consensus 301 r~vGvWPVGlvg 312 (443)
....--||-+++
T Consensus 71 ~~~~~~~ii~~~ 82 (119)
T 2j48_A 71 QADPHPPLVLFL 82 (119)
T ss_dssp CCCSSCCCEEEE
T ss_pred cccCCCCEEEEe
Confidence 322223444443
No 21
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=37.26 E-value=96 Score=23.90 Aligned_cols=81 Identities=15% Similarity=0.020 Sum_probs=49.6
Q ss_pred ceEEEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 219 LLWIVVEMTSQ-SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 219 L~WIVVEd~~~-s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
..=+||||... ...+.++|++.|..... + ..-..|++.++++..+-||.=.+..+.--+++.++|
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~--~------------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l 72 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQVEI--A------------HNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSL 72 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEE--E------------SSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcEEEE--e------------CCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 34467787553 56678899987764332 1 123568888888887766554444455567788888
Q ss_pred hccceeeeeEeeeecC
Q 013414 298 RQIRRFGTWTVGKLSE 313 (443)
Q Consensus 298 R~ir~vGvWPVGlvg~ 313 (443)
|+......=||-++++
T Consensus 73 ~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 73 RQNKVANQPKILVVSG 88 (132)
T ss_dssp HTTTCSSCCEEEEECC
T ss_pred HhcCccCCCeEEEEeC
Confidence 8755333445554444
No 22
>3tj8_A Urease accessory protein UREE; metal binding protein; 1.59A {Helicobacter pylori} PDB: 3tj9_A 3tja_A 3l9z_A 3la0_A 3nxz_A 3ny0_A
Probab=35.71 E-value=69 Score=29.02 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=37.9
Q ss_pred eEEEEccCCCcchhhhhHHHHHhhh--ccCCCCceEEEEecC------CCCHHHHHHHHhcCCceeEeeec
Q 013414 188 LIIIVTPTDAQPFQAYYLNRLAHTL--RMVQPPLLWIVVEMT------SQSEETADVLRRTGVMYRHLVCK 250 (443)
Q Consensus 188 lIivVTPTy~R~~Q~a~LTRLahTL--~lVpp~L~WIVVEd~------~~s~~ta~lLrrsGl~y~HL~~~ 250 (443)
-+++|||.- ..+|.|+|+-| ||+| +.||+. .....+.++|++-|+.|++...+
T Consensus 79 ~vl~i~~~~-----~~~l~r~ayhLGNRH~p-----~~i~~~~~~l~i~~D~vl~~mL~~lG~~v~~~~~p 139 (170)
T 3tj8_A 79 EVIHIQAKS-----VAEVAKICYEIGNRHAA-----LYYGESQFEFKTPFEKPTLALLEKLGVQNRVLSSK 139 (170)
T ss_dssp EEEEEECSS-----HHHHHHHHHHHHHHTCC-----EEECSSTTEEEEECCHHHHHHHHHHTCEEEEEEEC
T ss_pred cEEEEeCCC-----HHHHHHHHHHHcCCcce-----EEECCCceEEEEcCcHHHHHHHHHCCCeeEEEEec
Confidence 344555532 56789999998 6776 344444 22467899999999999999875
No 23
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=33.70 E-value=85 Score=24.54 Aligned_cols=81 Identities=6% Similarity=-0.048 Sum_probs=48.9
Q ss_pred ceEEEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 219 LLWIVVEMTSQ-SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 219 L~WIVVEd~~~-s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
..=+||||... .....++|++.|.... .+ ..-..|++.++++..+-||.=.+..+.-.+++.++|
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~~v~--~~------------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l 73 (142)
T 3cg4_A 8 GDVMIVDDDAHVRIAVKTILSDAGFHII--SA------------DSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAI 73 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE--EE------------SSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCeEEE--Ee------------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 33357777553 5667889998885422 22 123468889988876655554444444557788888
Q ss_pred hccceeeeeEeeeecC
Q 013414 298 RQIRRFGTWTVGKLSE 313 (443)
Q Consensus 298 R~ir~vGvWPVGlvg~ 313 (443)
|+.....--||-++++
T Consensus 74 ~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 74 LDNSLEQGIAIVMLTA 89 (142)
T ss_dssp HHTTCCTTEEEEEEEC
T ss_pred HhhcccCCCCEEEEEC
Confidence 7633333456665554
No 24
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=33.20 E-value=93 Score=23.88 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=48.7
Q ss_pred EEEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhc
Q 013414 221 WIVVEMTSQ-SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQ 299 (443)
Q Consensus 221 WIVVEd~~~-s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~ 299 (443)
=+||||... .....++|++.|..... + ..-..|++.++++..+-|+.=.+..+.--+++.++||+
T Consensus 6 ilivdd~~~~~~~l~~~L~~~g~~v~~--~------------~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~ 71 (127)
T 3i42_A 6 ALIVEDYQAAAETFKELLEMLGFQADY--V------------MSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRA 71 (127)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTEEEEE--E------------SSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCEEE--E------------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 367787654 56678999998853221 1 12246889998888776665544445555777888876
Q ss_pred cceeeeeEeeeecC
Q 013414 300 IRRFGTWTVGKLSE 313 (443)
Q Consensus 300 ir~vGvWPVGlvg~ 313 (443)
.....--||-++++
T Consensus 72 ~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 72 LPMEKTSKFVAVSG 85 (127)
T ss_dssp SCCSSCCEEEEEEC
T ss_pred hhccCCCCEEEEEC
Confidence 53223345555544
No 25
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=31.17 E-value=72 Score=25.00 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=43.1
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhcc
Q 013414 222 IVVEMTSQ-SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQI 300 (443)
Q Consensus 222 IVVEd~~~-s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~i 300 (443)
+||||... ...+.++|++.|.... .+ ..-..|+..++++.-+-|| ..|.+ .+++.++||+.
T Consensus 22 livdd~~~~~~~l~~~L~~~g~~v~--~~------------~~~~~al~~l~~~~~dlvi-~~~~~---g~~~~~~l~~~ 83 (137)
T 2pln_A 22 LLIEKNSVLGGEIEKGLNVKGFMAD--VT------------ESLEDGEYLMDIRNYDLVM-VSDKN---ALSFVSRIKEK 83 (137)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEE--EE------------SCHHHHHHHHHHSCCSEEE-ECSTT---HHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHcCcEEE--Ee------------CCHHHHHHHHHcCCCCEEE-EcCcc---HHHHHHHHHhc
Confidence 56777543 4567888888776433 22 1224588888888777777 33333 36778888764
Q ss_pred ceee-eeEeeeecC
Q 013414 301 RRFG-TWTVGKLSE 313 (443)
Q Consensus 301 r~vG-vWPVGlvg~ 313 (443)
. --||-++++
T Consensus 84 ---~~~~~ii~ls~ 94 (137)
T 2pln_A 84 ---HSSIVVLVSSD 94 (137)
T ss_dssp ---STTSEEEEEES
T ss_pred ---CCCccEEEEeC
Confidence 2 335555544
No 26
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=29.57 E-value=13 Score=31.99 Aligned_cols=18 Identities=28% Similarity=0.648 Sum_probs=13.5
Q ss_pred CCeEEEEe-cCCCcccHHH
Q 013414 276 LDGIVYFA-DENNIYLTDL 293 (443)
Q Consensus 276 l~GVVYFA-DDDNtYdl~L 293 (443)
..|+++|| |||++|+..|
T Consensus 80 vkG~avFaS~d~sVy~a~l 98 (106)
T 3nrf_A 80 VEGDAIFASEDDAVYGASL 98 (106)
T ss_dssp EEEEEEEEESSSGGGGEEE
T ss_pred eeeEEEEeeCChhheeeeE
Confidence 57988888 5688898643
No 27
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=29.25 E-value=1.1e+02 Score=23.79 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=50.1
Q ss_pred ceEEEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 219 LLWIVVEMTSQ-SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 219 L~WIVVEd~~~-s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
..=+||||... ...+.++|++.|..... + ..-..|++.++++..+-||.=.+..+.=-+++.++|
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~v~~--~------------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l 72 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFDSDM--V------------HSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRAL 72 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEE--E------------CSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCeEEE--E------------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 45578888654 56678899998865322 1 112568899988887766554444444457777888
Q ss_pred hccceeeeeEeeeecC
Q 013414 298 RQIRRFGTWTVGKLSE 313 (443)
Q Consensus 298 R~ir~vGvWPVGlvg~ 313 (443)
|+.....-=||-++++
T Consensus 73 ~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 73 RRDSRTRDLAIVVVSA 88 (140)
T ss_dssp HTSGGGTTCEEEEECT
T ss_pred HhCcccCCCCEEEEec
Confidence 7643223335555554
No 28
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=28.47 E-value=69 Score=29.08 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 261 VHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 261 v~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
-.+||.|++.- ..-+|.|.|.|-.++-..+++|
T Consensus 63 a~a~N~Gi~~A----~g~yl~fln~D~~~~~~~l~~l 95 (249)
T 2nxv_A 63 FSWHKQMLPRC----KGRYVIFCHEDVELVDRGYDDL 95 (249)
T ss_dssp TTHHHHHGGGC----CSSEEEEEETTEECSSCCHHHH
T ss_pred HHHHHHHHHhc----CCCEEEEECCCcccCccHHHHH
Confidence 36899998753 2348999999988877666664
No 29
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=28.14 E-value=1.2e+02 Score=24.00 Aligned_cols=78 Identities=21% Similarity=0.183 Sum_probs=47.1
Q ss_pred EEEecCC-CCHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhcc
Q 013414 222 IVVEMTS-QSEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQI 300 (443)
Q Consensus 222 IVVEd~~-~s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~i 300 (443)
+||||.. ......++|++.|.... .+ ..-..|+..++++..+-||.=.+..+.-.+++.++||+.
T Consensus 12 Livd~~~~~~~~l~~~L~~~g~~v~--~~------------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 77 (147)
T 2zay_A 12 MLVDTQLPALAASISALSQEGFDII--QC------------GNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKN 77 (147)
T ss_dssp EEECTTGGGGHHHHHHHHHHTEEEE--EE------------SSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTS
T ss_pred EEEeCCHHHHHHHHHHHHHcCCeEE--Ee------------CCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcC
Confidence 5777755 45778899998875322 22 123468888888887766654444444456777777763
Q ss_pred ceeeeeEeeeecC
Q 013414 301 RRFGTWTVGKLSE 313 (443)
Q Consensus 301 r~vGvWPVGlvg~ 313 (443)
....--||-++++
T Consensus 78 ~~~~~~pii~ls~ 90 (147)
T 2zay_A 78 PQTASIPVIALSG 90 (147)
T ss_dssp TTTTTSCEEEEES
T ss_pred cccCCCCEEEEeC
Confidence 2222335555544
No 30
>1ear_A Urease accessory protein UREE; chaperone, putative NI-chaperone, urease operon; 1.7A {Bacillus pasteurii} SCOP: b.107.1.1 d.58.38.1 PDB: 1eb0_A
Probab=25.62 E-value=1.4e+02 Score=26.13 Aligned_cols=57 Identities=14% Similarity=0.243 Sum_probs=38.4
Q ss_pred ceEEEEccCCCcchhhhhHHHHHhhh--ccCCCCc--eEEEEecCCCCHHHHHHHHhcCCceeEeeecC
Q 013414 187 KLIIIVTPTDAQPFQAYYLNRLAHTL--RMVQPPL--LWIVVEMTSQSEETADVLRRTGVMYRHLVCKK 251 (443)
Q Consensus 187 ~lIivVTPTy~R~~Q~a~LTRLahTL--~lVpp~L--~WIVVEd~~~s~~ta~lLrrsGl~y~HL~~~~ 251 (443)
.-+++|||.- ..+|.|+|+-| ||+|-.+ -|+.|.. ...+.++|++.|+.|+....+-
T Consensus 76 e~vl~i~~~d-----~~~l~r~ayhlGNRH~p~~i~~~~l~v~~---D~vl~~mL~~lg~~v~~~~~~f 136 (147)
T 1ear_A 76 EKVYVIKPQT-----MQEMGKMAFEIGNRHTMCIIEDDEILVRY---DKTLEKLIDEVGVSYEQSERRF 136 (147)
T ss_dssp EEEEEEECSS-----HHHHHHHHHHHHHTTCCCEEETTEEEEEC---CHHHHHHHHHHTCEEEEEEECC
T ss_pred CcEEEEECCC-----HHHHHHHHHHHhCCCceeEEeCCEEEEcC---cHHHHHHHHHCCCeeEEEEecC
Confidence 4455666642 34689999998 7787211 2333332 4678999999999999987653
No 31
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=25.34 E-value=1.2e+02 Score=23.83 Aligned_cols=81 Identities=21% Similarity=0.121 Sum_probs=47.5
Q ss_pred ceEEEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 219 LLWIVVEMTSQ-SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 219 L~WIVVEd~~~-s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
..=+||||... ......+|++.|.... .+. .=..||+.++++..+=|+.=.+-.+.--+++.++|
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~--~~~------------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l 70 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGYEVR--RAA------------SGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRV 70 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE--EES------------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEE--EeC------------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 34467888654 4667889998885322 221 12458888988877766554333444457788888
Q ss_pred hccceeeeeEeeeecC
Q 013414 298 RQIRRFGTWTVGKLSE 313 (443)
Q Consensus 298 R~ir~vGvWPVGlvg~ 313 (443)
|+.....--||=++++
T Consensus 71 r~~~~~~~~pii~~t~ 86 (136)
T 3t6k_A 71 RQHPLTKTLPILMLTA 86 (136)
T ss_dssp HHSGGGTTCCEEEEEC
T ss_pred HcCCCcCCccEEEEec
Confidence 7642222234544444
No 32
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=24.66 E-value=1.5e+02 Score=22.74 Aligned_cols=65 Identities=20% Similarity=0.152 Sum_probs=41.4
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhhcc
Q 013414 222 IVVEMTSQ-SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQI 300 (443)
Q Consensus 222 IVVEd~~~-s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR~i 300 (443)
+||||... .....++|++.|.... .+. .=..||+.++++..+-|+.=.+..+.--+++..+||+.
T Consensus 6 livdd~~~~~~~l~~~L~~~g~~v~--~~~------------~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~ 71 (120)
T 3f6p_A 6 LVVDDEKPIADILEFNLRKEGYEVH--CAH------------DGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKK 71 (120)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEE--EES------------SHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTT
T ss_pred EEEECCHHHHHHHHHHHHhCCEEEE--EeC------------CHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 57887653 4567888988885432 221 12458888988877766554444444457788888764
No 33
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=23.96 E-value=2.3e+02 Score=21.66 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=43.6
Q ss_pred eEEEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHhh
Q 013414 220 LWIVVEMTSQ-SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELR 298 (443)
Q Consensus 220 ~WIVVEd~~~-s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdemR 298 (443)
.=++|||... ...+.++|++.| |....+..+. ..|++.++++..+=|+.=.+..+.--+++.++||
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g--~~v~~~~~~~-----------~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~ 69 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKND--IEILAELTEG-----------GSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLR 69 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTT--EEEEEEESSS-----------TTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhhCC--cEEEEEcCCH-----------HHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHH
Confidence 3467887654 567789999998 4443222211 2378888888877666555545555677888887
Q ss_pred cc
Q 013414 299 QI 300 (443)
Q Consensus 299 ~i 300 (443)
+.
T Consensus 70 ~~ 71 (134)
T 3f6c_A 70 KR 71 (134)
T ss_dssp HT
T ss_pred hc
Confidence 64
No 34
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=23.64 E-value=98 Score=25.03 Aligned_cols=68 Identities=16% Similarity=0.051 Sum_probs=44.7
Q ss_pred ceEEEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 219 LLWIVVEMTSQ-SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 219 L~WIVVEd~~~-s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
..=+||||... ...+.++|++.|.... .+ ..-..|++.++++..+-||.=.+..+.--+++.++|
T Consensus 8 ~~ILivdd~~~~~~~l~~~L~~~g~~v~--~~------------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l 73 (154)
T 3gt7_A 8 GEILIVEDSPTQAEHLKHILEETGYQTE--HV------------RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWL 73 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEE--EE------------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCEEE--Ee------------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 44567888654 5667899998885322 12 122468888888877766665554555567888888
Q ss_pred hcc
Q 013414 298 RQI 300 (443)
Q Consensus 298 R~i 300 (443)
|+.
T Consensus 74 r~~ 76 (154)
T 3gt7_A 74 KGQ 76 (154)
T ss_dssp HHS
T ss_pred HhC
Confidence 764
No 35
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=23.28 E-value=1.2e+02 Score=22.81 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=41.0
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCC-CcccHHHHHHhhc
Q 013414 222 IVVEMTSQ-SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADEN-NIYLTDLFEELRQ 299 (443)
Q Consensus 222 IVVEd~~~-s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDD-NtYdl~LFdemR~ 299 (443)
+||||... .....++|++.|..... +. .-..|++.++++..+-||.=.+.. +.-.+++.++||+
T Consensus 9 livdd~~~~~~~l~~~L~~~g~~v~~--~~------------~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~ 74 (127)
T 2gkg_A 9 LIVESDTALSATLRSALEGRGFTVDE--TT------------DGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKK 74 (127)
T ss_dssp EEECSCHHHHHHHHHHHHHHTCEEEE--EC------------CHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHhcCceEEE--ec------------CHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhc
Confidence 46777543 56678899988874432 21 124588888888877665544333 4445677888876
Q ss_pred c
Q 013414 300 I 300 (443)
Q Consensus 300 i 300 (443)
.
T Consensus 75 ~ 75 (127)
T 2gkg_A 75 D 75 (127)
T ss_dssp S
T ss_pred C
Confidence 5
No 36
>1gmu_A UREE; metallochaperone; 1.5A {Klebsiella aerogenes} SCOP: b.107.1.1 d.58.38.1 PDB: 1gmw_A 1gmw_D 1gmv_A
Probab=23.01 E-value=1.6e+02 Score=25.63 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=38.0
Q ss_pred ceEEEEccCCCcchhhhhHHHHHhhh--ccCCCCceEEEEecCC----CCHHHHHHHHhcCCceeEeeec
Q 013414 187 KLIIIVTPTDAQPFQAYYLNRLAHTL--RMVQPPLLWIVVEMTS----QSEETADVLRRTGVMYRHLVCK 250 (443)
Q Consensus 187 ~lIivVTPTy~R~~Q~a~LTRLahTL--~lVpp~L~WIVVEd~~----~s~~ta~lLrrsGl~y~HL~~~ 250 (443)
.-++.||+.- ..+|.|+|+-| ||+| +.||+.. .-..+.++|++.|+.++....+
T Consensus 72 E~vl~v~~~~-----~~~l~r~ayhLGNRH~p-----~~i~~~~l~v~~D~vl~~mL~~lG~~v~~~~~p 131 (143)
T 1gmu_A 72 EEVSVVRCDD-----PFMLAKACYALGNRHVP-----LQIMPGELRYHHDHVLDDMLRQFGLTVTFGQLP 131 (143)
T ss_dssp EEEEEEECSC-----HHHHHHHHHHHHHTTCC-----CEEETTEEEEECCHHHHHHHHTTTCCEEEEEEE
T ss_pred CcEEEEECCC-----HHHHHHHHHHHhCCcce-----eEEeCCEEEEcCcHHHHHHHHHcCCeeEEEEec
Confidence 3455666542 34699999999 6776 3445432 2467899999999999998754
No 37
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=22.12 E-value=1.2e+02 Score=30.70 Aligned_cols=87 Identities=20% Similarity=0.147 Sum_probs=55.3
Q ss_pred ceEEEE--ccCCCcchhhhhHHHHHhhhcc---CCCCceEEEEecCC--CCHHHHHHHHhcCCceeEeeecCCCCCC---
Q 013414 187 KLIIIV--TPTDAQPFQAYYLNRLAHTLRM---VQPPLLWIVVEMTS--QSEETADVLRRTGVMYRHLVCKKNLTDV--- 256 (443)
Q Consensus 187 ~lIivV--TPTy~R~~Q~a~LTRLahTL~l---Vpp~L~WIVVEd~~--~s~~ta~lLrrsGl~y~HL~~~~~~~~~--- 256 (443)
..|++- |||+-.+.+ |.+|...++. ++ ....|-||... -+++..+.|++.|+...+|++..-.+..
T Consensus 106 ~~i~fgGGtpt~l~~~~---l~~ll~~i~~~~~~~-~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~ 181 (457)
T 1olt_A 106 SQLHWGGGTPTYLNKAQ---ISRLMKLLRENFQFN-ADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRL 181 (457)
T ss_dssp EEEEEEESCGGGSCHHH---HHHHHHHHHHHSCEE-EEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHH
T ss_pred EEEEEeCCCcccCCHHH---HHHHHHHHHHhCCCC-CCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHH
Confidence 455554 788755444 4444444443 33 35678889643 3788999999999999999886422111
Q ss_pred --CchhhhHHHHHHHHHHhhCCC
Q 013414 257 --KDTRVHQRNVALSHIENHHLD 277 (443)
Q Consensus 257 --~~rgv~QRN~AL~~Ir~h~l~ 277 (443)
+.-...+--.|++.+++....
T Consensus 182 i~R~~~~~~~~~ai~~~r~~G~~ 204 (457)
T 1olt_A 182 VNREQDEEFIFALLNHAREIGFT 204 (457)
T ss_dssp HTCCCCHHHHHHHHHHHHHTTCC
T ss_pred hCCCCCHHHHHHHHHHHHHcCCC
Confidence 112246677888888887544
No 38
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.87 E-value=1.2e+02 Score=23.17 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=45.2
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHh-------hCCCeEEEEecCCCcccHHH
Q 013414 222 IVVEMTSQ-SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIEN-------HHLDGIVYFADENNIYLTDL 293 (443)
Q Consensus 222 IVVEd~~~-s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~-------h~l~GVVYFADDDNtYdl~L 293 (443)
+||||... .....++|++.|..+.-..+. .-..|++.+++ +.-+-||.=.+..+.-.+++
T Consensus 6 livdd~~~~~~~l~~~L~~~~~~~~v~~~~------------~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~ 73 (140)
T 1k68_A 6 FLVEDNKADIRLIQEALANSTVPHEVVTVR------------DGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREV 73 (140)
T ss_dssp EEECCCHHHHHHHHHHHHTCSSCCEEEEEC------------SHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHH
T ss_pred EEEeCCHHHHHHHHHHHHhcCCCceEEEEC------------CHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHH
Confidence 57777553 566788999888743322222 23568888887 45554444333333344677
Q ss_pred HHHhhccceeeeeEeeeecC
Q 013414 294 FEELRQIRRFGTWTVGKLSE 313 (443)
Q Consensus 294 FdemR~ir~vGvWPVGlvg~ 313 (443)
.++||+.....--||-++++
T Consensus 74 ~~~l~~~~~~~~~pii~ls~ 93 (140)
T 1k68_A 74 LAEIKSDPTLKRIPVVVLST 93 (140)
T ss_dssp HHHHHHSTTGGGSCEEEEES
T ss_pred HHHHHcCcccccccEEEEec
Confidence 77777643222335555544
No 39
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=21.15 E-value=2.1e+02 Score=23.82 Aligned_cols=68 Identities=18% Similarity=0.050 Sum_probs=43.2
Q ss_pred ceEEEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 219 LLWIVVEMTSQ-SEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 219 L~WIVVEd~~~-s~~ta~lLrrsGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
+.=+||||... ...+.++|++.|...++.+. .=..||+.+++++-+-|+.=..--+.=-+++.++|
T Consensus 9 ~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~-------------~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~l 75 (123)
T 2lpm_A 9 LRVLVVEDESMIAMLIEDTLCELGHEVAATAS-------------RMQEALDIARKGQFDIAIIDVNLDGEPSYPVADIL 75 (123)
T ss_dssp CCEEEESSSTTTSHHHHHHHHHHCCCCCBCSC-------------CHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEEC-------------CHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHH
Confidence 44469999764 67889999999865333221 12368999999887766542222222235677778
Q ss_pred hc
Q 013414 298 RQ 299 (443)
Q Consensus 298 R~ 299 (443)
|+
T Consensus 76 r~ 77 (123)
T 2lpm_A 76 AE 77 (123)
T ss_dssp HH
T ss_pred Hc
Confidence 76
No 40
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=20.61 E-value=2e+02 Score=22.13 Aligned_cols=81 Identities=6% Similarity=-0.047 Sum_probs=47.0
Q ss_pred eEEEEecCCC-CHHHHHHHHh-cCCceeEeeecCCCCCCCchhhhHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHh
Q 013414 220 LWIVVEMTSQ-SEETADVLRR-TGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEEL 297 (443)
Q Consensus 220 ~WIVVEd~~~-s~~ta~lLrr-sGl~y~HL~~~~~~~~~~~rgv~QRN~AL~~Ir~h~l~GVVYFADDDNtYdl~LFdem 297 (443)
.=+||||... .....++|++ .|....+.. ..-..|+..++++.-+-||.=.+..+.--+++.++|
T Consensus 10 ~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~-------------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l 76 (143)
T 3cnb_A 10 SILIIEDDKEFADMLTQFLENLFPYAKIKIA-------------YNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRI 76 (143)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCTTCEEEEE-------------CSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHhccCccEEEEE-------------CCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHH
Confidence 3357777553 4667888988 777522221 123468888888877766554444444456777777
Q ss_pred hccceeeeeEeeeecC
Q 013414 298 RQIRRFGTWTVGKLSE 313 (443)
Q Consensus 298 R~ir~vGvWPVGlvg~ 313 (443)
|+.....--||=++++
T Consensus 77 ~~~~~~~~~~ii~~s~ 92 (143)
T 3cnb_A 77 KSTPATANIIVIAMTG 92 (143)
T ss_dssp HTSTTTTTSEEEEEES
T ss_pred HhCccccCCcEEEEeC
Confidence 7632222335555544
Done!