BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013415
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IFY|A Chain A, Structure Of Bacillus Anthracis Cofactor-Independent
Phosphoglucerate Mutase
Length = 508
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 147 DFLHSSPMMEPKPQLVKETRESLLRHLTSILGNDGIA 183
D + S MMEP + V+ T E L + + +IL DG+A
Sbjct: 401 DMVGHSGMMEPTIKAVEATDECLGKVVEAILAKDGVA 437
>pdb|2QS0|A Chain A, Quinolinate Synthase From Pyrococcus Furiosus
Length = 323
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 101 LDSDVMADKNDQDESSY--GFIEDELVHLPPEKVPRLHCLIHRKLDVNDF-----LHSSP 153
LDSDV+ D++ + Y ++ +PPE HC +H+K + D LH +
Sbjct: 160 LDSDVIIFGPDKNLAHYVAKVTGKTIIPIPPEG----HCYVHKKFTIEDVERAKKLHPNA 215
Query: 154 MMEPKPQLVKETRESLLRHLTSILGNDGI 182
+ P+ E +E H I+ G+
Sbjct: 216 KLMVHPECNPEVQE----HADIIVSTGGM 240
>pdb|1OGC|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGE|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGF|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
Length = 131
Score = 28.9 bits (63), Expect = 5.6, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 263 LIPGVLQLADGSHLIIDETQLE----TGTLNSTGVENARLLKNLMEFQKVEY-NFEYYKM 317
L PG+ D + ++ +E +E + ++ ENA+ L+NL Q++EY + E +K+
Sbjct: 44 LKPGLPAFQDTAAVLAEEMAVEKVIAAAEIKASNQENAKFLENLFSEQEIEYLSHEEFKL 103
>pdb|3OC3|A Chain A, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
pdb|3OC3|B Chain B, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
Length = 800
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 247 LNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLM-E 304
LNTA K Y T+ L+ + + D + I+ +T +L G + AR+L++LM +
Sbjct: 33 LNTAQSKVLKGYTTDELVSQIKEYVDFTPYILKQTYRLLCGQASEDRRNGARILRSLMFQ 92
Query: 305 FQKV-EYNFEY 314
F+ V ++ EY
Sbjct: 93 FKLVTDFKIEY 103
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 218 SVSVFGNQ-----VRLSVQNLLPFTQCIPLTVNYLNT--------ASLAPKKDYQTNRLI 264
S S+F N+ + LS ++L + I N+LNT + L P D N +
Sbjct: 70 SFSIFNNRGKYVVLELSTEDL--HSNTIVFGPNFLNTRMKLDYIVSQLVPIFDVDGNEVE 127
Query: 265 PGVLQLADGSHLIIDETQLETGTLNSTGVE 294
P + D HLIID+ T TGVE
Sbjct: 128 PFTSKQTDEKHLIIDDFLAFTFKDPETGVE 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,756,705
Number of Sequences: 62578
Number of extensions: 465971
Number of successful extensions: 1282
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1281
Number of HSP's gapped (non-prelim): 6
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)