Query 013415
Match_columns 443
No_of_seqs 139 out of 191
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:37:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2545 Conserved membrane pro 100.0 1.5E-96 3E-101 739.9 28.4 350 67-443 192-543 (543)
2 COG1241 MCM2 Predicted ATPase 100.0 4.1E-35 8.9E-40 317.3 26.4 330 67-434 188-591 (682)
3 KOG0482 DNA replication licens 100.0 6.3E-36 1.4E-40 308.3 17.1 329 68-435 244-638 (721)
4 KOG0480 DNA replication licens 100.0 1.2E-33 2.7E-38 297.7 20.7 341 68-437 217-645 (764)
5 PF13615 Racemase_4: Putative 100.0 7.2E-33 1.6E-37 236.1 7.8 102 170-271 1-102 (102)
6 PTZ00111 DNA replication licen 100.0 1E-28 2.2E-33 273.4 25.1 324 75-434 348-803 (915)
7 KOG0481 DNA replication licens 100.0 1.9E-28 4.1E-33 253.4 24.2 331 68-434 228-638 (729)
8 KOG0478 DNA replication licens 100.0 4.2E-28 9.2E-33 257.6 19.4 334 67-437 321-726 (804)
9 KOG0479 DNA replication licens 100.0 3.6E-27 7.7E-32 246.8 20.6 318 68-434 206-641 (818)
10 smart00350 MCM minichromosome 99.9 4.4E-25 9.5E-30 235.7 29.2 338 68-434 97-503 (509)
11 PF00493 MCM: MCM2/3/5 family 99.9 3.3E-28 7.1E-33 246.9 0.1 251 163-435 12-326 (331)
12 KOG0477 DNA replication licens 99.9 6.1E-25 1.3E-29 231.4 17.9 327 71-435 354-757 (854)
13 TIGR02442 Cob-chelat-sub cobal 98.7 1.6E-06 3.4E-11 95.8 20.0 229 177-434 6-303 (633)
14 TIGR02031 BchD-ChlD magnesium 98.5 4.5E-06 9.7E-11 91.5 17.5 210 208-434 18-257 (589)
15 PRK13407 bchI magnesium chelat 98.2 0.00028 6.1E-09 72.5 20.7 230 177-434 10-305 (334)
16 TIGR00368 Mg chelatase-related 98.1 6.4E-05 1.4E-09 81.0 16.4 229 178-434 195-498 (499)
17 TIGR02030 BchI-ChlI magnesium 98.1 0.00014 3E-09 74.8 17.1 231 177-435 6-309 (337)
18 TIGR00764 lon_rel lon-related 98.1 8E-05 1.7E-09 82.1 16.0 166 262-442 207-398 (608)
19 PRK09862 putative ATP-dependen 98.1 0.00011 2.3E-09 79.3 16.2 215 205-435 209-492 (506)
20 CHL00081 chlI Mg-protoporyphyr 97.8 0.002 4.3E-08 66.7 19.1 230 177-434 19-321 (350)
21 PRK13406 bchD magnesium chelat 97.7 0.0012 2.6E-08 72.5 17.7 203 209-434 28-249 (584)
22 PRK13531 regulatory ATPase Rav 97.7 0.012 2.6E-07 63.3 23.2 233 163-432 8-281 (498)
23 PRK13765 ATP-dependent proteas 96.9 0.007 1.5E-07 67.2 12.0 161 262-433 216-398 (637)
24 CHL00181 cbbX CbbX; Provisiona 96.5 0.094 2E-06 52.7 15.8 230 166-429 14-272 (287)
25 TIGR02902 spore_lonB ATP-depen 95.9 0.52 1.1E-05 51.5 18.3 147 263-433 166-330 (531)
26 TIGR02881 spore_V_K stage V sp 95.7 0.25 5.5E-06 48.5 13.7 190 206-429 42-254 (261)
27 COG1239 ChlI Mg-chelatase subu 95.6 0.68 1.5E-05 49.0 16.9 237 172-441 14-328 (423)
28 COG1067 LonB Predicted ATP-dep 95.2 0.29 6.4E-06 54.6 13.6 162 262-442 215-406 (647)
29 PF13654 AAA_32: AAA domain; P 94.8 0.064 1.4E-06 58.2 6.8 164 262-434 322-505 (509)
30 PF01078 Mg_chelatase: Magnesi 93.9 0.37 7.9E-06 46.5 9.1 130 177-329 5-156 (206)
31 COG0714 MoxR-like ATPases [Gen 92.7 13 0.00028 37.8 19.2 242 163-431 12-292 (329)
32 TIGR02880 cbbX_cfxQ probable R 92.0 7.9 0.00017 38.8 16.1 181 205-415 57-253 (284)
33 TIGR02640 gas_vesic_GvpN gas v 91.8 3.1 6.6E-05 41.1 12.8 148 263-432 94-254 (262)
34 COG0606 Predicted ATPase with 91.6 0.94 2E-05 48.7 9.3 229 178-435 182-485 (490)
35 PRK10787 DNA-binding ATP-depen 90.7 3.2 6.8E-05 47.7 13.0 215 170-408 317-548 (784)
36 TIGR02903 spore_lon_C ATP-depe 89.7 6 0.00013 44.1 13.9 155 263-435 256-430 (615)
37 TIGR02329 propionate_PrpR prop 89.4 14 0.0003 40.6 16.2 187 204-409 233-444 (526)
38 PF13335 Mg_chelatase_2: Magne 87.9 2.3 4.9E-05 36.0 7.1 54 376-434 42-95 (96)
39 PRK11608 pspF phage shock prot 86.8 13 0.00028 38.0 13.2 112 205-330 28-149 (326)
40 PF00158 Sigma54_activat: Sigm 86.7 1.7 3.6E-05 40.3 6.1 111 206-330 22-142 (168)
41 PRK15424 propionate catabolism 86.4 26 0.00057 38.6 16.1 192 203-409 239-459 (538)
42 TIGR02639 ClpA ATP-dependent C 84.4 11 0.00023 43.0 12.3 127 168-309 447-583 (731)
43 TIGR02915 PEP_resp_reg putativ 83.6 45 0.00098 34.9 15.9 112 205-330 161-282 (445)
44 PRK11034 clpA ATP-dependent Cl 82.4 15 0.00033 42.1 12.4 128 167-309 450-587 (758)
45 PRK05022 anaerobic nitric oxid 80.7 61 0.0013 35.2 15.9 181 205-411 209-416 (509)
46 COG2204 AtoC Response regulato 79.0 42 0.0009 36.4 13.7 185 205-419 163-376 (464)
47 TIGR02974 phageshock_pspF psp 78.4 7.1 0.00015 40.0 7.5 112 205-330 21-142 (329)
48 TIGR03420 DnaA_homol_Hda DnaA 75.9 62 0.0013 30.3 12.7 61 360-432 165-225 (226)
49 PTZ00361 26 proteosome regulat 75.6 20 0.00044 38.4 10.2 41 398-438 387-427 (438)
50 TIGR00635 ruvB Holliday juncti 75.2 90 0.0019 30.9 15.4 54 373-434 175-228 (305)
51 PRK11388 DNA-binding transcrip 74.7 42 0.00091 37.4 12.8 112 205-330 347-465 (638)
52 PRK08727 hypothetical protein; 72.2 96 0.0021 29.9 13.4 177 208-435 43-231 (233)
53 TIGR01817 nifA Nif-specific re 71.7 1.2E+02 0.0027 32.9 15.3 112 205-330 218-339 (534)
54 CHL00095 clpC Clp protease ATP 70.9 51 0.0011 38.1 12.7 136 168-319 502-650 (821)
55 TIGR01242 26Sp45 26S proteasom 70.7 33 0.00071 35.4 10.1 36 398-433 326-361 (364)
56 PTZ00454 26S protease regulato 70.5 58 0.0013 34.5 12.1 38 398-435 349-386 (398)
57 PRK08084 DNA replication initi 69.2 71 0.0015 30.9 11.6 56 370-434 180-235 (235)
58 PRK03992 proteasome-activating 69.1 59 0.0013 34.1 11.7 37 398-434 335-371 (389)
59 PRK10923 glnG nitrogen regulat 68.8 1.6E+02 0.0035 31.1 18.1 114 203-330 158-281 (469)
60 TIGR03346 chaperone_ClpB ATP-d 68.4 70 0.0015 37.2 13.2 126 169-309 559-697 (852)
61 PRK06893 DNA replication initi 67.7 1.2E+02 0.0026 29.1 15.0 175 207-433 40-228 (229)
62 PF07726 AAA_3: ATPase family 65.1 26 0.00057 31.6 7.0 102 208-330 1-109 (131)
63 PRK11361 acetoacetate metaboli 63.3 2E+02 0.0043 30.1 15.0 112 205-330 165-286 (457)
64 PRK05342 clpX ATP-dependent pr 63.0 47 0.001 35.3 9.6 136 167-309 63-217 (412)
65 PRK10865 protein disaggregatio 59.2 97 0.0021 36.1 12.0 128 169-309 562-700 (857)
66 PRK00080 ruvB Holliday junctio 58.9 2.1E+02 0.0045 29.0 13.7 55 372-434 195-249 (328)
67 PRK15115 response regulator Gl 57.1 2.5E+02 0.0054 29.3 14.2 113 204-330 155-277 (444)
68 PRK15429 formate hydrogenlyase 56.3 2.6E+02 0.0057 31.5 14.7 181 205-411 398-605 (686)
69 CHL00176 ftsH cell division pr 55.3 2.5E+02 0.0053 31.8 14.0 36 398-433 386-421 (638)
70 PF07728 AAA_5: AAA domain (dy 54.6 21 0.00045 31.0 4.5 90 208-311 1-97 (139)
71 PRK09087 hypothetical protein; 53.3 1.9E+02 0.0041 27.9 11.3 51 373-434 169-221 (226)
72 PRK00411 cdc6 cell division co 52.9 2.4E+02 0.0052 28.9 12.8 54 375-433 227-280 (394)
73 TIGR02928 orc1/cdc6 family rep 51.7 2.7E+02 0.0059 28.1 15.0 55 375-434 219-273 (365)
74 TIGR01818 ntrC nitrogen regula 49.2 3.4E+02 0.0073 28.5 14.7 112 205-330 156-277 (463)
75 PF12774 AAA_6: Hydrolytic ATP 49.0 5.3 0.00012 39.0 -0.2 178 210-412 36-224 (231)
76 CHL00195 ycf46 Ycf46; Provisio 48.7 2.2E+02 0.0048 31.1 12.0 186 208-433 261-461 (489)
77 TIGR01613 primase_Cterm phage/ 47.7 1.7E+02 0.0037 29.3 10.4 134 169-330 43-180 (304)
78 PF05496 RuvB_N: Holliday junc 47.1 2.3E+02 0.0049 28.1 10.7 169 208-412 52-226 (233)
79 TIGR00763 lon ATP-dependent pr 45.4 3.1E+02 0.0068 31.5 13.2 215 170-408 315-547 (775)
80 TIGR00382 clpX endopeptidase C 44.4 67 0.0015 34.3 7.1 132 167-305 69-221 (413)
81 PRK10820 DNA-binding transcrip 43.6 65 0.0014 35.2 7.1 112 205-330 226-347 (520)
82 PHA02244 ATPase-like protein 41.2 1.4E+02 0.003 31.7 8.7 109 206-330 119-229 (383)
83 TIGR03345 VI_ClpV1 type VI sec 38.9 2E+02 0.0044 33.6 10.5 146 168-329 559-715 (852)
84 PRK05201 hslU ATP-dependent pr 38.0 40 0.00086 36.3 4.2 139 261-409 237-400 (443)
85 TIGR00362 DnaA chromosomal rep 37.5 3.6E+02 0.0077 28.1 11.3 53 373-434 284-336 (405)
86 COG3829 RocR Transcriptional r 35.6 58 0.0012 36.0 5.0 111 205-330 267-389 (560)
87 PRK14709 hypothetical protein; 33.3 6.6E+02 0.014 27.2 14.8 139 167-329 170-309 (469)
88 PRK14086 dnaA chromosomal repl 33.0 4E+02 0.0086 30.1 11.1 54 371-433 460-513 (617)
89 PF03847 TFIID_20kDa: Transcri 32.3 2.3E+02 0.0049 22.5 6.7 52 368-433 7-63 (68)
90 smart00803 TAF TATA box bindin 30.8 1.9E+02 0.0042 22.6 6.1 51 371-432 13-64 (65)
91 PRK10365 transcriptional regul 29.8 1.9E+02 0.004 30.1 7.7 111 206-330 162-282 (441)
92 PRK13342 recombination factor 28.5 3.5E+02 0.0076 28.4 9.5 21 208-232 38-58 (413)
93 COG1224 TIP49 DNA helicase TIP 27.2 5.6E+02 0.012 27.5 10.2 128 275-434 294-431 (450)
94 PLN00158 histone H2B; Provisio 27.0 3.7E+02 0.0079 23.9 7.6 64 360-434 26-92 (116)
95 KOG3416 Predicted nucleic acid 26.9 70 0.0015 28.8 3.2 30 70-99 44-74 (134)
96 PTZ00463 histone H2B; Provisio 26.0 3.9E+02 0.0084 23.7 7.6 64 360-434 27-93 (117)
97 TIGR00390 hslU ATP-dependent p 25.8 1.5E+02 0.0033 32.0 6.1 138 262-409 236-398 (441)
98 PRK00149 dnaA chromosomal repl 25.8 4.9E+02 0.011 27.6 10.1 52 373-433 296-347 (450)
99 PRK13341 recombination factor 25.4 9.3E+02 0.02 27.7 12.6 209 173-433 27-245 (725)
100 smart00576 BTP Bromodomain tra 25.2 3.5E+02 0.0077 21.5 8.6 61 362-433 7-69 (77)
101 PF12616 DUF3775: Protein of u 24.8 94 0.002 25.3 3.4 25 411-435 19-44 (75)
102 PF00125 Histone: Core histone 24.7 2.4E+02 0.0052 21.9 5.7 49 375-434 26-74 (75)
103 PRK07003 DNA polymerase III su 23.6 5.9E+02 0.013 29.8 10.5 26 272-305 119-145 (830)
104 PRK08691 DNA polymerase III su 23.3 2.5E+02 0.0055 32.2 7.5 60 361-432 181-241 (709)
105 KOG2170 ATPase of the AAA+ sup 21.7 1.1E+02 0.0023 31.8 3.8 123 166-304 73-203 (344)
106 TIGR03015 pepcterm_ATPase puta 21.6 4.7E+02 0.01 24.9 8.3 65 361-433 195-264 (269)
107 KOG3440 Ubiquinol cytochrome c 20.5 2.2E+02 0.0047 25.3 5.0 37 405-441 61-108 (122)
108 PTZ00112 origin recognition co 20.3 1.1E+03 0.023 28.6 11.7 75 353-438 934-1010(1164)
No 1
>KOG2545 consensus Conserved membrane protein [Function unknown]
Probab=100.00 E-value=1.5e-96 Score=739.85 Aligned_cols=350 Identities=45% Similarity=0.716 Sum_probs=318.1
Q ss_pred cCCC-CCCcEEEEEEcCCCCCcccCcEEEEEEEeecCcccccccCCCCCCccccchhhhccCCCCCcceEeEEEEEeecC
Q 013415 67 NAER-NSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDV 145 (443)
Q Consensus 67 n~P~-~~~~clVKvYd~~~~~lKlNdvve~vGILs~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlH~i~~~~l~~ 145 (443)
++|+ ++.||+||||++++.++|+||+|||||||+++|.+...+.. ++....+.+..| .+.++|
T Consensus 192 Plps~ds~aClVKvYe~~et~~qvnd~vdf~Gilsvdp~la~ld~l---d~~~~ae~qa~h-------------vq~lqh 255 (543)
T KOG2545|consen 192 PLPSNDSGACLVKVYEGMETKVQVNDAVDFIGILSVDPELASLDGL---DCLHMAEFQAYH-------------VQALQH 255 (543)
T ss_pred CCCCCCCCceEEEEecCcccceehhhhhhhheeeecChhhhcCCCc---ccccHHHHHHHH-------------HhccCC
Confidence 3688 99999999999988789999999999999999988332211 111222222222 344444
Q ss_pred CCcCCCCCCCCCCcchh-HHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHH
Q 013415 146 NDFLHSSPMMEPKPQLV-KETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGN 224 (443)
Q Consensus 146 ~~~~~~~~~~~~~~~~~-~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~ 224 (443)
.++. .+.-+ .++|++|+.||+.+|+||.+|||||||||+|+||+|++++++|+|+|||+|||++ +.|+.
T Consensus 256 ~nPl--------lp~ilr~el~~~Llkylt~~Lg~d~iAAeyLllhLlStV~~R~d~l~iGkftlNL~ncpke--s~f~t 325 (543)
T KOG2545|consen 256 PNPL--------LPEILRKELRPKLLKYLTKVLGNDNIAAEYLLLHLLSTVYHRTDGLVIGKFTLNLTNCPKE--SIFVT 325 (543)
T ss_pred CCcc--------chHHHHHHhhHHHHHHHHHhhcCchHHHHHHHHHHHHHhhccccceEeeeeEEeecCCCch--hHHHH
Confidence 3221 11222 5678999999999999999999999999999999999999999999999999976 69999
Q ss_pred HHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHH
Q 013415 225 QVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLME 304 (443)
Q Consensus 225 ~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~ 304 (443)
+|+++|+.|+|+++++|||+++||+++|.|+|||++|||.+|+||||+|||||||||.|++|+|+..||+|+++|++||+
T Consensus 326 qLy~iL~~Llpas~~~pmtie~lNta~f~PkkDyetNrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~LsnLI~ 405 (543)
T KOG2545|consen 326 QLYSILRPLLPASVIQPMTIEELNTAPFYPKKDYETNRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLSNLIS 405 (543)
T ss_pred HHHHHHHHhchhhheeeeeHHhhcccCccccccccccccccceeecCCCceEEeehhhcCCCccCccchhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCeeeeeecccceeeeeccceEEeecCCCCcccCceeeeeccCCCCCCCCCChhhHHHHHHHHHHhccCCCcCChhHHHH
Q 013415 305 FQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKV 384 (443)
Q Consensus 305 ~Q~v~YdF~y~~~e~~~di~vliLS~gKS~~lp~D~~vpl~~~~~~~~~~~~~~~L~~~R~Yl~~~r~~~~~i~ee~~~~ 384 (443)
+|+|.|||+||+|++++||+|+|+|+|+| |+|+|+.++++|+....++.++++++++||.|++.+|.+.++|++|++++
T Consensus 406 ~Qkl~ydfqyyqme~~~nv~vlIlSeGrs-ilPADl~i~lqp~~v~~le~~tps~l~q~rcyltt~r~l~~nIsee~t~~ 484 (543)
T KOG2545|consen 406 QQKLTYDFQYYQMEVHSNVRVLILSEGRS-ILPADLGIRLQPDSVDTLEFPTPSDLLQFRCYLTTMRNLRANISEEMTDY 484 (543)
T ss_pred ccccceecceEEEEeccCceEEEeeCCcc-cCcccccccCCCCCCCccccCChhHHHHHHHHHHHHHhhccCccHHHHHH
Confidence 99999999999999999999999999999 99999999999998877888899999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhhcC
Q 013415 385 VESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERLK 443 (443)
Q Consensus 385 Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~LE~~R~~Rl~ 443 (443)
||+|||+|||.|+.++++|||++|++||+++.|+|++++++|+|++|++||+.|+.|||
T Consensus 485 iq~dfV~mRq~n~~snaddLs~lLv~sRlls~S~G~ttlsre~wq~a~ele~lrr~rlq 543 (543)
T KOG2545|consen 485 IQSDFVSMRQYNKESNADDLSLLLVCSRLLSKSFGRTTLSREDWQAARELENLRRVRLQ 543 (543)
T ss_pred HHHHHHHHHhhCcccchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999997
No 2
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.1e-35 Score=317.30 Aligned_cols=330 Identities=17% Similarity=0.168 Sum_probs=260.2
Q ss_pred cCCCCCCcEE--EEEEcCCCCCcccCcEEEEEEEeecCcccccccCCCCCCccccchhhhccCCCCCcceEeEEEEEeec
Q 013415 67 NAERNSLPCL--VKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLD 144 (443)
Q Consensus 67 n~P~~~~~cl--VKvYd~~~~~lKlNdvve~vGILs~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlH~i~~~~l~ 144 (443)
.+|++..|.- |-+|++..+.+++||.|+++||+...|....... . ..+-.==-+|+..+.+..
T Consensus 188 ~~p~g~~Prs~~vil~~dlv~~~~pGdrV~itGi~~~~~~~~~~~~---~------------~~~~~~~~~~a~~v~~~~ 252 (682)
T COG1241 188 LVPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIVPSRSLSGR---R------------KGPVFEIYLEANSVEKLD 252 (682)
T ss_pred cCCCCCCCceEEEEEecCcccccCCCCEEEEEEEEecccccccccc---c------------CCceEEEEEEEEEEEecc
Confidence 4687778875 6666777789999999999999988763111000 0 000011124455555544
Q ss_pred CCCcCCCCCCCCC---CcchhHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccC-c-eeeeeeeeEeecCCCcch
Q 013415 145 VNDFLHSSPMMEP---KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARID-N-VAVGKLSLNLTCLSKESV 219 (443)
Q Consensus 145 ~~~~~~~~~~~~~---~~~~~~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~d-~-~~lG~~sLnl~~~p~~~~ 219 (443)
....+..++.... ..+...++++.|+.+|++.++|++.+++.+||+|||+|..... | ..+|++++.|.|+|+
T Consensus 253 ~~~~~~~t~ed~e~i~elak~~~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPg--- 329 (682)
T COG1241 253 KREEVEITEEDEEEIKELAKRPDIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPG--- 329 (682)
T ss_pred chhhccCCHHHHHHHHHHhcCCcHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCc---
Confidence 2211111111111 1122356789999999999999999999999999999988443 4 467999999999998
Q ss_pred hhhHHHHHHHHHhhcCceEEEee---ehhhhhcCCCcccccCCCC--cccccceEeeCCcEEEEecCC-CCcCcccccch
Q 013415 220 SVFGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDETQ-LETGTLNSTGV 293 (443)
Q Consensus 220 ~~~~~~L~~~l~~L~P~s~~lpl---tl~~LN~~~l~P~kD~~~~--~L~sG~LQLa~gT~lviDEt~-L~~G~L~~~Gv 293 (443)
+.++||++++..++|+++|+.. |..+|++.. ++|..+| .|++|+|.|||||.+||||.. |..+
T Consensus 330 -taKSqlLk~v~~~aPr~vytsgkgss~~GLTAav---~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~------- 398 (682)
T COG1241 330 -TAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAV---VRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE------- 398 (682)
T ss_pred -hhHHHHHHHHHhhCCceEEEccccccccCceeEE---EEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH-------
Confidence 8999999999999999999998 577777744 8888877 699999999999999999996 6555
Q ss_pred hHHHHHHHHHHhCeee--------------------------eeecccceeeeeccceEEeecCCCCcccCceeeeeccC
Q 013415 294 ENARLLKNLMEFQKVE--------------------------YNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPS 347 (443)
Q Consensus 294 ~N~~aL~~li~~Q~v~--------------------------YdF~y~~~e~~~di~vliLS~gKS~~lp~D~~vpl~~~ 347 (443)
...|||++|+||+|+ || ++.++.-++|+|..+||+ ||+++++.++
T Consensus 399 -dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd-~~~~~~enI~l~~~lLSR-------FDLifvl~D~ 469 (682)
T COG1241 399 -DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYD-PKKTVAENINLPAPLLSR-------FDLIFVLKDD 469 (682)
T ss_pred -HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCC-CCCCHHHhcCCChhHHhh-------CCeeEEecCC
Confidence 899999999999999 66 677888999999999999 9999999977
Q ss_pred CCCCC-----------C--CCCh-------------hhHHHHHHHHHHhccC-CCcCChhHHHHHHHHHHHHhhcCC---
Q 013415 348 SAASF-----------E--VVPA-------------ETLEAWRWYLASVRSL-PHSIESDMQKVVESDLVAARQADR--- 397 (443)
Q Consensus 348 ~~~~~-----------~--~~~~-------------~~L~~~R~Yl~~~r~~-~~~i~ee~~~~Iq~dFV~~Rq~~~--- 397 (443)
.+... + ...+ .+.+.+|+||+|||+. .+.|++++.++|.+.||+||+.+.
T Consensus 470 ~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~ 549 (682)
T COG1241 470 PDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVE 549 (682)
T ss_pred CCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhcccccc
Confidence 65430 0 0001 0367899999999984 689999999999999999999642
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 398 -----SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 398 -----~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
.||.++|+++++||.++|+.+.++.++.+|.+.|.+|
T Consensus 550 ~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~l 591 (682)
T COG1241 550 EKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRL 591 (682)
T ss_pred ccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence 4999999999999999999999999999999999987
No 3
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=100.00 E-value=6.3e-36 Score=308.30 Aligned_cols=329 Identities=18% Similarity=0.178 Sum_probs=260.7
Q ss_pred CCCCCCcEE--EEEEcCCCCCcccCcEEEEEEEeecCcccccccCCCCCCccccchhhhccCCCCCcceEeEEEEEeecC
Q 013415 68 AERNSLPCL--VKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDV 145 (443)
Q Consensus 68 ~P~~~~~cl--VKvYd~~~~~lKlNdvve~vGILs~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlH~i~~~~l~~ 145 (443)
+|-+..|.- |.+|........|||+|+|-||+-.-|-.....--+ .+..|. ++-.=-+..+.|...
T Consensus 244 VPvG~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~a-----GLladt-------YLeAh~v~~~nk~~~ 311 (721)
T KOG0482|consen 244 VPVGHIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKA-----GLLADT-------YLEAHRVVQINKKYD 311 (721)
T ss_pred CCCCccCceeEEEEecccceecCCCCEEEEeeeecccchhhHHHHHh-----hhHHHH-------HHHHhhhhhhccccc
Confidence 788888875 889998777899999999999986655333211000 111110 111100111122111
Q ss_pred CCcCCCCCCCCCCcchh-----HHHHHHHHHHHHhhhcCcHHHHHHHHHHHhccccccc-Cceee-eeeeeEeecCCCcc
Q 013415 146 NDFLHSSPMMEPKPQLV-----KETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARI-DNVAV-GKLSLNLTCLSKES 218 (443)
Q Consensus 146 ~~~~~~~~~~~~~~~~~-----~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~-d~~~l-G~~sLnl~~~p~~~ 218 (443)
+ .+..... .+... ....++|..+||+.++|+..+++.|||.|+++|..+. +||.+ |++++.|+|+|+
T Consensus 312 ~--~~~~~~~--~~~~~~~~~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPG-- 385 (721)
T KOG0482|consen 312 N--IEKTGEL--EPEELELIAEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPG-- 385 (721)
T ss_pred c--ccccccc--cHHHHHHhhcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCc--
Confidence 1 1111111 11111 3357999999999999999999999999999999988 78766 999999999998
Q ss_pred hhhhHHHHHHHHHhhcCceEEEee---ehhhhhcCCCcccccCCCC--cccccceEeeCCcEEEEecCC-CCcCcccccc
Q 013415 219 VSVFGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDETQ-LETGTLNSTG 292 (443)
Q Consensus 219 ~~~~~~~L~~~l~~L~P~s~~lpl---tl~~LN~~~l~P~kD~~~~--~L~sG~LQLa~gT~lviDEt~-L~~G~L~~~G 292 (443)
++++||++++..|+||++|.+. +.-+|+++. .||..|| .|+.|+|.|||||.+||||.+ |.+.
T Consensus 386 --VAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV---mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~------ 454 (721)
T KOG0482|consen 386 --VAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV---MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES------ 454 (721)
T ss_pred --hhHHHHHHHHHhcCcccceecCCCCCccccchhh---hcCCCCCeeEeccceEEEccCceEeehhhhhhhhh------
Confidence 8999999999999999999997 456677755 7899998 799999999999999999997 6554
Q ss_pred hhHHHHHHHHHHhCeee--------------------------eeecccceeeeeccceEEeecCCCCcccCceeeeecc
Q 013415 293 VENARLLKNLMEFQKVE--------------------------YNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQP 346 (443)
Q Consensus 293 v~N~~aL~~li~~Q~v~--------------------------YdF~y~~~e~~~di~vliLS~gKS~~lp~D~~vpl~~ 346 (443)
+..|||++|+||+|+ |+ |-.+++.++++|..+||+ ||+.+.+++
T Consensus 455 --DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYn-prrs~e~NI~LPaALLSR-------FDll~Li~D 524 (721)
T KOG0482|consen 455 --DRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYN-PRRSPEQNINLPAALLSR-------FDLLWLIQD 524 (721)
T ss_pred --hhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccC-cccChhHhcCCcHHHHHh-------hhhhhhhcc
Confidence 799999999999999 66 678999999999999999 999999985
Q ss_pred CCCC--CC-------------CC----CChhhHHHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCC------CCCH
Q 013415 347 SSAA--SF-------------EV----VPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADR------SLGG 401 (443)
Q Consensus 347 ~~~~--~~-------------~~----~~~~~L~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~------~it~ 401 (443)
..+. +. +. ..+-+++.+|.||+.||..++.+++++.++|...||++||..+ -.|+
T Consensus 525 ~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttp 604 (721)
T KOG0482|consen 525 RPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTP 604 (721)
T ss_pred CCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCH
Confidence 5433 31 11 1345789999999999999999999999999999999999763 2789
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 013415 402 QDLSRLLTMGRLMSASFGETSLSLEHWQMVKELE 435 (443)
Q Consensus 402 ~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~LE 435 (443)
+.|-.+|+|+-++|+.+..+.+.++|.+.|++|=
T Consensus 605 RtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 605 RTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred HHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999999999999984
No 4
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-33 Score=297.71 Aligned_cols=341 Identities=18% Similarity=0.190 Sum_probs=268.5
Q ss_pred CCCCCCcEE--EEEEcCCCCCcccCcEEEEEEEeecCcccccccCCCCCCccccchhhhccCCC--CCcceEeEEEEEee
Q 013415 68 AERNSLPCL--VKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPP--EKVPRLHCLIHRKL 143 (443)
Q Consensus 68 ~P~~~~~cl--VKvYd~~~~~lKlNdvve~vGILs~~p~~~~~~~~~~~~~~~~~~~~~~~~p~--~~vPrlH~i~~~~l 143 (443)
+|++++|.- |-++++..+..++||.|+|+|||-+.|.........-.+ .+.+.-. ..|--+-++..+.+
T Consensus 217 ~p~GsiPRtvdviLr~dlVe~~~pGD~v~~TGiliVvpdv~~l~~pgsk~-------~n~r~~~~~~~i~~lkal~Vrdl 289 (764)
T KOG0480|consen 217 IPRGSIPRTVDVILRGDLVETAQPGDKVDITGILIVVPDVSQLGGPGSKA-------ENNRGGETGDGITGLKALGVRDL 289 (764)
T ss_pred CCCCCCCceeEEEEhhhhHhhcCCCCEEEEEEEEEEecChHHhcCCcccc-------ccccCCCcccceeeehhcccccc
Confidence 799999986 556788888999999999999999988633111000000 0000000 11444445555554
Q ss_pred cCC-CcCCC--CC--CCCC-------------------CcchhHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhccccccc
Q 013415 144 DVN-DFLHS--SP--MMEP-------------------KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARI 199 (443)
Q Consensus 144 ~~~-~~~~~--~~--~~~~-------------------~~~~~~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~ 199 (443)
... .|+.. ++ ..+. ..+..+.+...|+.+|.+.++|+++++--+||.|+++|+.+.
T Consensus 290 ~yq~aFlac~~~~~~~~ee~~~~~~~~~~s~~e~~~~~em~~~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a 369 (764)
T KOG0480|consen 290 TYQLAFLACHVQSTLAVEEDDEEDMLNSMSSEEFAEIREMSKDENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSA 369 (764)
T ss_pred hhhhhHhhhhcccccccchhhhHHHhhhccHHHHHHHHHHhcCchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccC
Confidence 421 11110 00 0000 111124467899999999999999999999999999999988
Q ss_pred C-cee-eeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEee---ehhhhhcCCCcccccCCCC--cccccceEeeC
Q 013415 200 D-NVA-VGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQTN--RLIPGVLQLAD 272 (443)
Q Consensus 200 d-~~~-lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpl---tl~~LN~~~l~P~kD~~~~--~L~sG~LQLa~ 272 (443)
+ +.+ +|++++.|+|+|+ +.++|+++....++||+.|+.+ |.++|+.+. +||.++| .+++|+|.|||
T Consensus 370 ~eg~~lRGDinv~iVGDPg----t~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaV---vkD~esgdf~iEAGALmLAD 442 (764)
T KOG0480|consen 370 GEGTSLRGDINVCIVGDPG----TGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAV---VKDEESGDFTIEAGALMLAD 442 (764)
T ss_pred CCCccccCCceEEEeCCCC----ccHHHHHHHHhccCCcceEecCcccccccceEEE---EecCCCCceeeecCcEEEcc
Confidence 7 544 5999999999997 8899999999999999999998 577888754 8999998 79999999999
Q ss_pred CcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeee--------------------------eeecccceeeeeccceE
Q 013415 273 GSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVE--------------------------YNFEYYKMEMIADVQML 326 (443)
Q Consensus 273 gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~--------------------------YdF~y~~~e~~~di~vl 326 (443)
||.++|||. ++++++.-.||+++|+||+|+ || .-.++..+++...-
T Consensus 443 nGICCIDEF-------DKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYd-R~ktl~eNi~msAp 514 (764)
T KOG0480|consen 443 NGICCIDEF-------DKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYD-RKKTLRENINMSAP 514 (764)
T ss_pred CceEEechh-------cccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccc-cccchhhhcCCCch
Confidence 999999999 577888899999999999999 66 55688999999999
Q ss_pred EeecCCCCcccCceeeeeccCCCCCC---------------CCC----ChhhHHHHHHHHHHhccCCCcCChhHHHHHHH
Q 013415 327 ILSEGKSNIVPADLVIPFQPSSAASF---------------EVV----PAETLEAWRWYLASVRSLPHSIESDMQKVVES 387 (443)
Q Consensus 327 iLS~gKS~~lp~D~~vpl~~~~~~~~---------------~~~----~~~~L~~~R~Yl~~~r~~~~~i~ee~~~~Iq~ 387 (443)
|+|+ ||+.|.|-++.+... ... ..-.++++|+||.+||...+.++.|+.++|.+
T Consensus 515 imSR-------FDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve 587 (764)
T KOG0480|consen 515 IMSR-------FDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVE 587 (764)
T ss_pred hhhh-------hcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHH
Confidence 9999 999999887754320 111 12357899999999999999999999999999
Q ss_pred HHHHHhhcCC--------CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 013415 388 DLVAARQADR--------SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERL 437 (443)
Q Consensus 388 dFV~~Rq~~~--------~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~LE~~ 437 (443)
.|+.+|+.+. .||.++|+.++||+.++|+..-.+++|+++.+.|.+|=++
T Consensus 588 ~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~ 645 (764)
T KOG0480|consen 588 KYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKK 645 (764)
T ss_pred HHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHh
Confidence 9999999872 4999999999999999999999999999999999998554
No 5
>PF13615 Racemase_4: Putative alanine racemase
Probab=99.98 E-value=7.2e-33 Score=236.11 Aligned_cols=102 Identities=50% Similarity=0.758 Sum_probs=99.5
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhc
Q 013415 170 LRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNT 249 (443)
Q Consensus 170 l~~La~~l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~ 249 (443)
++||+++|+||.+||||+||||||+||+|++++++|+|+|||+|+|.+..+.++++|+++|++|+|+++++|||+++||+
T Consensus 1 l~~L~~~L~gD~LAAEylLlhLlS~v~~r~~~~~lG~~sLNl~~~~~~~~~~~~~~l~~~l~~l~P~~~~lpltl~~LN~ 80 (102)
T PF13615_consen 1 LDYLTQALGGDELAAEYLLLHLLSRVYSRTDSLPLGKFSLNLSNCPKSSLSSFASQLYSVLSQLVPRSHYLPLTLENLNS 80 (102)
T ss_pred ChHHHHHhcCCHHHHHHHHHHHhCceEeccCCccccccceeeecCCcchhhHHHHHHHHHHHHhhhheEEEeccHHHhcc
Confidence 47899999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred CCCcccccCCCCcccccceEee
Q 013415 250 ASLAPKKDYQTNRLIPGVLQLA 271 (443)
Q Consensus 250 ~~l~P~kD~~~~~L~sG~LQLa 271 (443)
.+|+|+|||++|||++|+||||
T Consensus 81 ~~~~P~kd~~~~rL~sG~LQLa 102 (102)
T PF13615_consen 81 LRFVPKKDYETNRLVSGVLQLA 102 (102)
T ss_pred CCccccccCccCcCccccCCCC
Confidence 9999999999999999999997
No 6
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.96 E-value=1e-28 Score=273.37 Aligned_cols=324 Identities=15% Similarity=0.134 Sum_probs=240.6
Q ss_pred EEEEEEcCCCCCcccCcEEEEEEEeecCcccccccCCCCCCccccchhhhccCCCCCcceEeEEEEEeecCCC-------
Q 013415 75 CLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVND------- 147 (443)
Q Consensus 75 clVKvYd~~~~~lKlNdvve~vGILs~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlH~i~~~~l~~~~------- 147 (443)
..|.+||+..+.+||||.|.|+|||...|......... ..+-+-+-+.++..+.+....
T Consensus 348 i~v~l~dDLVD~v~PGDrV~VtGIl~~~~~~~~~~~~~--------------~~~~~~~yl~~~~i~~~~~~~~~~~~~~ 413 (915)
T PTZ00111 348 INLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRT--------------LKSLYTYFVNVIHVKVINSTNANQPEKG 413 (915)
T ss_pred EEEEEecchhccCCCCCEEEEEEEEEeccccccccccc--------------cccccceEEEEEEEEEeccccccccccc
Confidence 56888999889999999999999999876422111000 001123445555555443110
Q ss_pred c--C----CCCCCCCC---CcchhHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhccccccc------C-----ceeeeee
Q 013415 148 F--L----HSSPMMEP---KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARI------D-----NVAVGKL 207 (443)
Q Consensus 148 ~--~----~~~~~~~~---~~~~~~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~------d-----~~~lG~~ 207 (443)
+ . ..++.... ..+.-+.+.+.|+.+|++.++|++.++..+||+||+++.... + ...+|++
T Consensus 414 ~~~~~~~~~~t~ed~~~I~~ls~~p~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdi 493 (915)
T PTZ00111 414 LKYLGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGII 493 (915)
T ss_pred cccccccccCCHHHHHHHHHHhcCHHHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCc
Confidence 0 0 00000000 111225678999999999999999999999999999996421 1 3457999
Q ss_pred eeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeee---hhhhhcCCCcccccCCCC--cccccceEeeCCcEEEEecCC
Q 013415 208 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLT---VNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDETQ 282 (443)
Q Consensus 208 sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lplt---l~~LN~~~l~P~kD~~~~--~L~sG~LQLa~gT~lviDEt~ 282 (443)
++.|.|.|+ +.+++|.+++..+.|+..|.+.. ..+|.+. .-.++..+| .+++|+|.+|+||.|+|||..
T Consensus 494 hVLLvGDPG----TGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~--~~~~d~~tG~~~le~GaLvlAdgGtL~IDEid 567 (915)
T PTZ00111 494 NVLLCGDPG----TAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTAS--IKFNESDNGRAMIQPGAVVLANGGVCCIDELD 567 (915)
T ss_pred eEEEeCCCC----ccHHHHHHHHHHhCCccccCCCCCCccccccch--hhhcccccCcccccCCcEEEcCCCeEEecchh
Confidence 999999998 88999999999999999987653 3444443 222554455 689999999999999999996
Q ss_pred -CCcCcccccchhHHHHHHHHHHhCeee--------------------------eeecccceeeeeccceEEeecCCCCc
Q 013415 283 -LETGTLNSTGVENARLLKNLMEFQKVE--------------------------YNFEYYKMEMIADVQMLILSEGKSNI 335 (443)
Q Consensus 283 -L~~G~L~~~Gv~N~~aL~~li~~Q~v~--------------------------YdF~y~~~e~~~di~vliLS~gKS~~ 335 (443)
|.. .-..+|+++|++|+++ || ++.++.-++++|.-+||+
T Consensus 568 kms~--------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd-~~~s~~eni~Lp~~LLSR----- 633 (915)
T PTZ00111 568 KCHN--------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYN-KNKAVIENINISPSLFTR----- 633 (915)
T ss_pred hCCH--------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccC-cccCcccccCCChHHhhh-----
Confidence 443 3578899999999985 44 556677788888888888
Q ss_pred ccCceeeeeccCCCCC---------C------CC----------------------------CChhhHHHHHHHHHHhcc
Q 013415 336 VPADLVIPFQPSSAAS---------F------EV----------------------------VPAETLEAWRWYLASVRS 372 (443)
Q Consensus 336 lp~D~~vpl~~~~~~~---------~------~~----------------------------~~~~~L~~~R~Yl~~~r~ 372 (443)
||+++.+.+..+.. + +. ....+.+.+|+||+|||.
T Consensus 634 --FDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~ 711 (915)
T PTZ00111 634 --FDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKL 711 (915)
T ss_pred --hcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhc
Confidence 99999987664421 0 00 001246789999999996
Q ss_pred -CCCcCChhHHHHHHHHHHHHhhcC-----------------------------CCCCHHHHHHHHHHHHHHHHHcCCCC
Q 013415 373 -LPHSIESDMQKVVESDLVAARQAD-----------------------------RSLGGQDLSRLLTMGRLMSASFGETS 422 (443)
Q Consensus 373 -~~~~i~ee~~~~Iq~dFV~~Rq~~-----------------------------~~it~~~L~~~L~LaRllAlS~G~~~ 422 (443)
..+.|++|+.+.|++.||+||+.+ -+||.++|+.++|||.++|+.+.++.
T Consensus 712 ~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~ 791 (915)
T PTZ00111 712 HCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTV 791 (915)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCc
Confidence 589999999999999999999731 14899999999999999999999999
Q ss_pred CCHHHHHHHHHH
Q 013415 423 LSLEHWQMVKEL 434 (443)
Q Consensus 423 lt~e~W~~a~~L 434 (443)
++.+|.+.|++|
T Consensus 792 Vt~~Dv~~Ai~L 803 (915)
T PTZ00111 792 VTPADALQAVQI 803 (915)
T ss_pred ccHHHHHHHHHH
Confidence 999999999988
No 7
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=99.96 E-value=1.9e-28 Score=253.41 Aligned_cols=331 Identities=15% Similarity=0.168 Sum_probs=258.4
Q ss_pred CCCCCCcEEEEEEcC--CCCCcccCcEEEEEEEeecCcccccccCCCCCCccccchhhhccCCCCCcceEeEEEEEeecC
Q 013415 68 AERNSLPCLVKIYDC--PESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDV 145 (443)
Q Consensus 68 ~P~~~~~clVKvYd~--~~~~lKlNdvve~vGILs~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlH~i~~~~l~~ 145 (443)
+|-+-+|....+|-+ ..+.+-||..|.++||++.-........+.. .... ..|-+-|+..+.-..
T Consensus 228 VP~GE~PRhl~L~~dRyL~~kvvPG~RvtI~GIYsI~~~~~~~~s~k~--------~v~i-----R~PyirVvGi~~ds~ 294 (729)
T KOG0481|consen 228 VPVGEMPRHLQLFCDRYLTNKVVPGNRVTIMGIYSIKKFGSTSSSDKS--------GVGI-----RTPYIRVVGIQDDSE 294 (729)
T ss_pred CCcCcCcchhhhhhhHHHhccccCCceEEEEEEEEeeeccccCCCCcc--------ceee-----ecceEEEEEEEeccC
Confidence 456777777666654 2457899999999999997533221111000 0001 156666665554332
Q ss_pred CCcCCCC----CCCCC---CcchhHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccc-cCceee-eeeeeEeecCCC
Q 013415 146 NDFLHSS----PMMEP---KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHAR-IDNVAV-GKLSLNLTCLSK 216 (443)
Q Consensus 146 ~~~~~~~----~~~~~---~~~~~~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r-~d~~~l-G~~sLnl~~~p~ 216 (443)
..=.++. +..++ ..+..+.+.+.+-..|++.++|+...+..+.|-|+++-..+ +||+.+ |++.+.|-|+|+
T Consensus 295 ~ss~~~~~~ft~eEEEeFk~la~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPg 374 (729)
T KOG0481|consen 295 GSSRSSATMFTPEEEEEFKKLAASPDVYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPG 374 (729)
T ss_pred CccccCcccCChhHHHHHHHHhcCccHHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCc
Confidence 1101111 11111 12223567899999999999999999999999999997774 567665 999999999998
Q ss_pred cchhhhHHHHHHHHHhhcCceEEEee---ehhhhhcCCCcccccCCC-C-cccccceEeeCCcEEEEecCC-CCcCcccc
Q 013415 217 ESVSVFGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQT-N-RLIPGVLQLADGSHLIIDETQ-LETGTLNS 290 (443)
Q Consensus 217 ~~~~~~~~~L~~~l~~L~P~s~~lpl---tl~~LN~~~l~P~kD~~~-~-~L~sG~LQLa~gT~lviDEt~-L~~G~L~~ 290 (443)
++++||++|++.+.|-.+|.+. ++++|++.. .+|..+ + .|+.|++.|||||++||||.+ |.+.
T Consensus 375 ----tAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV---~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~---- 443 (729)
T KOG0481|consen 375 ----TAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASV---IRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRED---- 443 (729)
T ss_pred ----hhHHHHHHHHHhcCceEEEecCCCcccccceeeE---EecCCcceEEEecceEEEecCCEEEeehhhccCch----
Confidence 9999999999999999999998 588888754 688877 4 899999999999999999997 6655
Q ss_pred cchhHHHHHHHHHHhCeee--------------------------eeecccceeeeeccceEEeecCCCCcccCceeeee
Q 013415 291 TGVENARLLKNLMEFQKVE--------------------------YNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPF 344 (443)
Q Consensus 291 ~Gv~N~~aL~~li~~Q~v~--------------------------YdF~y~~~e~~~di~vliLS~gKS~~lp~D~~vpl 344 (443)
+.-|||++|+||+++ || .+.+-+-++|....|||+ ||+++.+
T Consensus 444 ----DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyD-d~Kt~~dNIDf~~TILSR-------FDmIFIV 511 (729)
T KOG0481|consen 444 ----DRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYD-DTKTGEDNIDFMPTILSR-------FDMIFIV 511 (729)
T ss_pred ----hhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCcccccc-ccCCcccccchhhhHhhh-------ccEEEEE
Confidence 799999999999998 77 777788999999999999 9999999
Q ss_pred ccCCCC--C---------C-----CCC--------ChhhHHHHHHHHHHhccC-CCcCChhHHHHHHHHHHHHhhcC---
Q 013415 345 QPSSAA--S---------F-----EVV--------PAETLEAWRWYLASVRSL-PHSIESDMQKVVESDLVAARQAD--- 396 (443)
Q Consensus 345 ~~~~~~--~---------~-----~~~--------~~~~L~~~R~Yl~~~r~~-~~~i~ee~~~~Iq~dFV~~Rq~~--- 396 (443)
++..+. + + +.. .+..++.|++||.|||.. .+.+++++.+.+.+.||.||+.-
T Consensus 512 KD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~ 591 (729)
T KOG0481|consen 512 KDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQH 591 (729)
T ss_pred eccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHh
Confidence 977443 1 0 011 123579999999999975 89999999999999999999831
Q ss_pred -----C----CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 397 -----R----SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 397 -----~----~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
+ +||.++|+..++++..+|.+..+...|..|.++|++|
T Consensus 592 e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RL 638 (729)
T KOG0481|consen 592 EQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRL 638 (729)
T ss_pred hhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHH
Confidence 1 5999999999999999999999999999999999987
No 8
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.96 E-value=4.2e-28 Score=257.64 Aligned_cols=334 Identities=16% Similarity=0.133 Sum_probs=255.5
Q ss_pred cCCCCCCcEE--EEEEcCCCCCcccCcEEEEEEEeecCcccccccCCCCCCccccchhhhccCCCCCcceEeEEEEEeec
Q 013415 67 NAERNSLPCL--VKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLD 144 (443)
Q Consensus 67 n~P~~~~~cl--VKvYd~~~~~lKlNdvve~vGILs~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlH~i~~~~l~ 144 (443)
++|-+++|-- |-+|++..|++++||.|+|.|||.--|.-.... .. .. .+ -+-+-|-|+++++..
T Consensus 321 ~~p~g~tPhtv~v~~~~dLVD~v~pGDrv~VTGi~ra~p~r~np~-~r-----~v----kS----vyktyldvvh~rk~s 386 (804)
T KOG0478|consen 321 DMPEGSTPHTVSVVLHNDLVDKVRPGDRVEVTGILRATPVRVNPR-MR-----MV----KS----VYKTYLDVVHIRKAS 386 (804)
T ss_pred cCcCCCCCceEEEEEehhhhhccCCCCeEEEEEEEEeEEeccCcc-hh-----hH----HH----HHHHHhHhhhhhhhh
Confidence 4678888875 666788889999999999999998766433111 00 00 00 013334444455554
Q ss_pred CCCcCCCCCCC----------CC--CcchhHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccC--ceeeeeeeeE
Q 013415 145 VNDFLHSSPMM----------EP--KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARID--NVAVGKLSLN 210 (443)
Q Consensus 145 ~~~~~~~~~~~----------~~--~~~~~~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~d--~~~lG~~sLn 210 (443)
....-...+.+ ++ ..+..+++++.|..+||+.++|.++.+.-|||+|||+...-.. +.-+|++++.
T Consensus 387 ~~rl~~~d~~d~~~~~~~~~~e~i~elskrpdiy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INIL 466 (804)
T KOG0478|consen 387 MKRLEGSDERDVDEVRRIEDLEKIQELSKRPDIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINIL 466 (804)
T ss_pred hhhccccccccccccccHHHHHHHHHHhcCccHHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEE
Confidence 21110000000 00 1122356899999999999999999999999999999877433 3578999999
Q ss_pred eecCCCcchhhhHHHHHHHHHhhcCceEEEee---ehhhhhcCCCcccccCCCC--cccccceEeeCCcEEEEecCC-CC
Q 013415 211 LTCLSKESVSVFGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDETQ-LE 284 (443)
Q Consensus 211 l~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpl---tl~~LN~~~l~P~kD~~~~--~L~sG~LQLa~gT~lviDEt~-L~ 284 (443)
|+|+|+ +.++||++++.+|+||++|+.+ +..+|++-. .||.+|. -|++|+|.|+|||++||||.+ |.
T Consensus 467 L~GDPG----tsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayV---trd~dtkqlVLesGALVLSD~GiCCIDEFDKM~ 539 (804)
T KOG0478|consen 467 LVGDPG----TSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYV---TKDPDTRQLVLESGALVLSDNGICCIDEFDKMS 539 (804)
T ss_pred EecCCC----cCHHHHHHHHHHhCCcceeecCCccchhcceeeE---EecCccceeeeecCcEEEcCCceEEchhhhhhh
Confidence 999998 7899999999999999999997 577777643 7888887 689999999999999999996 54
Q ss_pred cCcccccchhHHHHHHHHHHhCeee--------------------------eeecccceeeeeccceEEeecCCCCcccC
Q 013415 285 TGTLNSTGVENARLLKNLMEFQKVE--------------------------YNFEYYKMEMIADVQMLILSEGKSNIVPA 338 (443)
Q Consensus 285 ~G~L~~~Gv~N~~aL~~li~~Q~v~--------------------------YdF~y~~~e~~~di~vliLS~gKS~~lp~ 338 (443)
.- -..-||++|+||+|+ |+ +-..+-.++++|..+||+ |
T Consensus 540 dS--------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skyn-p~k~i~eNI~LpptLLSR-------F 603 (804)
T KOG0478|consen 540 DS--------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYN-PNKSIIENINLPPTLLSR-------F 603 (804)
T ss_pred HH--------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCC-CCCchhhccCCChhhhhh-------h
Confidence 33 477899999999999 77 445778999999999999 9
Q ss_pred ceeeeeccCCCC--C--C---------C--CCC-h--hhHHHHHHHHHHhccC-CCcCChhHHHHHHHHHHHHhhcCC--
Q 013415 339 DLVIPFQPSSAA--S--F---------E--VVP-A--ETLEAWRWYLASVRSL-PHSIESDMQKVVESDLVAARQADR-- 397 (443)
Q Consensus 339 D~~vpl~~~~~~--~--~---------~--~~~-~--~~L~~~R~Yl~~~r~~-~~~i~ee~~~~Iq~dFV~~Rq~~~-- 397 (443)
|+++.+-+..+. + + + ... + -+.+.+|.|+.|||.. .+.+++|+++.+-..||.||+.+.
T Consensus 604 DLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~ 683 (804)
T KOG0478|consen 604 DLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGA 683 (804)
T ss_pred cEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccc
Confidence 999877654432 1 0 1 111 1 2346799999999984 678999999999999999999652
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 013415 398 ---SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERL 437 (443)
Q Consensus 398 ---~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~LE~~ 437 (443)
.-+.++|+.+++++.++|..+..+.+...+.++|+.|=++
T Consensus 684 ~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~ 726 (804)
T KOG0478|consen 684 GQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLRE 726 (804)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 3568999999999999999999999999999999988543
No 9
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=99.95 E-value=3.6e-27 Score=246.77 Aligned_cols=318 Identities=19% Similarity=0.206 Sum_probs=243.0
Q ss_pred CCCCCCcEEEEEE--cCCCCCcccCcEEEEEEEeecCcccccccCCCCCCccccchhhhccCCCCCcceEeEEEEEeec-
Q 013415 68 AERNSLPCLVKIY--DCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLD- 144 (443)
Q Consensus 68 ~P~~~~~clVKvY--d~~~~~lKlNdvve~vGILs~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlH~i~~~~l~- 144 (443)
-|.++.|.-|.|. ||..|..||||.|-+|||+..-|......-. + . +|.+-
T Consensus 206 APaGQLPRSVDvilddDLVD~~KPGDRV~ivG~yr~Lp~k~~g~ts------------------g-~-------FRTvli 259 (818)
T KOG0479|consen 206 APAGQLPRSVDVILDDDLVDRVKPGDRVNIVGIYRSLPGKSNGNTS------------------G-T-------FRTVLI 259 (818)
T ss_pred CCCCCCCcceeEEecccccccCCCCCeeEEEEEEeeccCccCCccc------------------c-e-------eEEEEE
Confidence 4668888887776 4557899999999999999877653321100 0 0 11111
Q ss_pred CCCc--CCCC--CCCCC-------CcchhHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhccccc--ccCceeeeeeeeEe
Q 013415 145 VNDF--LHSS--PMMEP-------KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHA--RIDNVAVGKLSLNL 211 (443)
Q Consensus 145 ~~~~--~~~~--~~~~~-------~~~~~~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~--r~d~~~lG~~sLnl 211 (443)
.|++ ++.. |..+. ..+....+-+.|-.+||+.++|+...+..+||-|+++|-. +.++-.+|++.+.+
T Consensus 260 aNni~~l~ke~~~~~t~~Di~~i~klsk~kdiFdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLl 339 (818)
T KOG0479|consen 260 ANNIELLSKEAAPDFTDEDIRNIKKLSKKKDIFDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILL 339 (818)
T ss_pred eccHHhhcccccccCChhhHHHHHHHHhcCCHHHHHhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEE
Confidence 1111 1110 11000 1112234567788888999999999999999999999977 44456679999999
Q ss_pred ecCCCcchhhhHHHHHHHHHhhcCceEEEee---ehhhhhcCCCcccccCCCC--cccccceEeeCCcEEEEecCC-CCc
Q 013415 212 TCLSKESVSVFGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDETQ-LET 285 (443)
Q Consensus 212 ~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpl---tl~~LN~~~l~P~kD~~~~--~L~sG~LQLa~gT~lviDEt~-L~~ 285 (443)
+|+|. ++++||+.++-+.+|+....++ +.-+|+++. .-|.+|| ||++|++.|||.|++||||.. |+.
T Consensus 340 vGDPS----vAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV---TtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsD 412 (818)
T KOG0479|consen 340 VGDPS----VAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV---TTDQETGERRLEAGAMVLADRGVVCIDEFDKMSD 412 (818)
T ss_pred ecCch----HHHHHHHHHHHhcccccccccCCCCCCccceeEE---eeccccchhhhhcCceEEccCceEEehhcccccc
Confidence 99995 9999999999999999988876 355677644 5677788 999999999999999999998 777
Q ss_pred CcccccchhHHHHHHHHHHhCeee--------------------------eeecccceeeeeccceEEeecCCCCcccCc
Q 013415 286 GTLNSTGVENARLLKNLMEFQKVE--------------------------YNFEYYKMEMIADVQMLILSEGKSNIVPAD 339 (443)
Q Consensus 286 G~L~~~Gv~N~~aL~~li~~Q~v~--------------------------YdF~y~~~e~~~di~vliLS~gKS~~lp~D 339 (443)
+ +..|||++|+||+|. || +|.+=-.++-+|=-+||+ ||
T Consensus 413 i--------DRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd-~~k~P~eNIgLpDSLLSR-------FD 476 (818)
T KOG0479|consen 413 I--------DRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYD-QSKTPMENIGLPDSLLSR-------FD 476 (818)
T ss_pred h--------hHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccC-CCCChhhccCCcHHHHhh-------hc
Confidence 6 799999999999998 55 555445677788888888 99
Q ss_pred eeeeeccCCCCC----C----------------------C-----CC---C-------------hhh-------------
Q 013415 340 LVIPFQPSSAAS----F----------------------E-----VV---P-------------AET------------- 359 (443)
Q Consensus 340 ~~vpl~~~~~~~----~----------------------~-----~~---~-------------~~~------------- 359 (443)
+.|.+-++.+.+ + . .. . ...
T Consensus 477 LlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~l 556 (818)
T KOG0479|consen 477 LLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLL 556 (818)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhcccccccccee
Confidence 998775543321 0 0 00 0 001
Q ss_pred -HHHHHHHHHHhcc-CCCcCChhHHHHHHHHHHHHhhcCC--------CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 013415 360 -LEAWRWYLASVRS-LPHSIESDMQKVVESDLVAARQADR--------SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQ 429 (443)
Q Consensus 360 -L~~~R~Yl~~~r~-~~~~i~ee~~~~Iq~dFV~~Rq~~~--------~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~ 429 (443)
++-+|+||.+||+ ..+.+++|+.++|-+.|-..|+.+. +||++.|+.+|+||.++|..+.+..++++|.+
T Consensus 557 ti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe 636 (818)
T KOG0479|consen 557 TIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAE 636 (818)
T ss_pred eHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHH
Confidence 1338999999998 6899999999999999999999763 69999999999999999999999999999999
Q ss_pred HHHHH
Q 013415 430 MVKEL 434 (443)
Q Consensus 430 ~a~~L 434 (443)
.|.+|
T Consensus 637 ~A~~L 641 (818)
T KOG0479|consen 637 AAVNL 641 (818)
T ss_pred HHHHH
Confidence 99887
No 10
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.94 E-value=4.4e-25 Score=235.73 Aligned_cols=338 Identities=18% Similarity=0.131 Sum_probs=241.4
Q ss_pred CCCCCCcEE--EEEEcCCCCCcccCcEEEEEEEeecCcccccccCCCCCCccccchhhhccCCCCCcceEeEEEEEeecC
Q 013415 68 AERNSLPCL--VKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDV 145 (443)
Q Consensus 68 ~P~~~~~cl--VKvYd~~~~~lKlNdvve~vGILs~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlH~i~~~~l~~ 145 (443)
+|.+.+|.. |.++|+..+.++|||.|.++|||...|........ . .-+-+...+++.+.+++..
T Consensus 97 ~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~~~~~~--~------------~~~~~~~~l~a~~i~~~~~ 162 (509)
T smart00350 97 VPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGFKLNTV--K------------GLPVFATYIEANHVRKLDY 162 (509)
T ss_pred CCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeeccccccccC--C------------CcceeeEEEEEeEEEEccc
Confidence 577777765 66778888899999999999999876511000000 0 0001246677777777653
Q ss_pred C-CcCCC-------CCCCCC---CcchhHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccc-cCc-eeeeeeeeEee
Q 013415 146 N-DFLHS-------SPMMEP---KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHAR-IDN-VAVGKLSLNLT 212 (443)
Q Consensus 146 ~-~~~~~-------~~~~~~---~~~~~~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r-~d~-~~lG~~sLnl~ 212 (443)
. .+... ++.... ..+.-+.+.+.|+..|++.++|+..++..++|.|++++... .++ ...|+.++.|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~ 242 (509)
T smart00350 163 KRSFEDCSFSVQSLSDEEEEEIRKLSKDPDIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLL 242 (509)
T ss_pred cccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEe
Confidence 2 11100 000000 01112346789999999999999999999999999998553 333 55699999999
Q ss_pred cCCCcchhhhHHHHHHHHHhhcCceEEEeee---hhhhhcCCCcccccCCCC--cccccceEeeCCcEEEEecCC-CCcC
Q 013415 213 CLSKESVSVFGNQVRLSVQNLLPFTQCIPLT---VNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDETQ-LETG 286 (443)
Q Consensus 213 ~~p~~~~~~~~~~L~~~l~~L~P~s~~lplt---l~~LN~~~l~P~kD~~~~--~L~sG~LQLa~gT~lviDEt~-L~~G 286 (443)
|.|+ +.++++.+++..+.|+..|++.. ..+|.. .+.+|..+| .+++|.|.+|+||.++|||.. |..
T Consensus 243 G~pG----tGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~---~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~- 314 (509)
T smart00350 243 GDPG----TAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA---AVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD- 314 (509)
T ss_pred CCCC----hhHHHHHHHHHHHcCcceEcCCCCCCcCCccc---cceEccCcceEEecCccEEecCCCEEEEechhhCCH-
Confidence 9998 78999999999999999888742 333332 334665555 689999999999999999996 433
Q ss_pred cccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCC------------ccc------CceeeeeccCC
Q 013415 287 TLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN------------IVP------ADLVIPFQPSS 348 (443)
Q Consensus 287 ~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~------------~lp------~D~~vpl~~~~ 348 (443)
+...+|.++|++|++.+.-......++++..++..+.-+-- -+| ||+++.+.+..
T Consensus 315 -------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~ 387 (509)
T smart00350 315 -------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEV 387 (509)
T ss_pred -------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCC
Confidence 35899999999999876533333444444444444421100 011 99999887554
Q ss_pred CCC----C-------C----C--C----ChhhHHHHHHHHHHhcc-CCCcCChhHHHHHHHHHHHHhhcC--------CC
Q 013415 349 AAS----F-------E----V--V----PAETLEAWRWYLASVRS-LPHSIESDMQKVVESDLVAARQAD--------RS 398 (443)
Q Consensus 349 ~~~----~-------~----~--~----~~~~L~~~R~Yl~~~r~-~~~~i~ee~~~~Iq~dFV~~Rq~~--------~~ 398 (443)
+.. + . + . ..-+.+.+|+||++||. ..+.+++++.++|.+.|+++|+.. -.
T Consensus 388 ~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~ 467 (509)
T smart00350 388 DEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIP 467 (509)
T ss_pred ChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccC
Confidence 321 0 0 0 0 11246899999999998 678899999999999999999843 25
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 399 LGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 399 it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
+|.+.|..|+++|+++|+.+|++.++.+|.+.|++|
T Consensus 468 ~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l 503 (509)
T smart00350 468 ITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRL 503 (509)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 899999999999999999999999999999999987
No 11
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.94 E-value=3.3e-28 Score=246.86 Aligned_cols=251 Identities=17% Similarity=0.156 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHhhhcCcHHHHHHHHHHHhccccccc--CceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEE
Q 013415 163 KETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARI--DNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCI 240 (443)
Q Consensus 163 ~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~--d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~l 240 (443)
+.+++.|+++|++.++|+..++..+||+|+|++.... ++..+|++++.|+|+|+ +.+++|.+++.+++|++.|.
T Consensus 12 ~~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg----~gKS~ll~~~~~~~pr~v~~ 87 (331)
T PF00493_consen 12 PNIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPG----TGKSQLLKYVAKLAPRSVYT 87 (331)
T ss_dssp TTHHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCH----HCHHHHHHCCCCT-SSEEEE
T ss_pred CcHHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchh----hhHHHHHHHHHhhCCceEEE
Confidence 3679999999999999999999999999999987732 35778999999999997 88999999999999999999
Q ss_pred eee---hhhhhcCCCcccccCCCC--cccccceEeeCCcEEEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeee--
Q 013415 241 PLT---VNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNF-- 312 (443)
Q Consensus 241 plt---l~~LN~~~l~P~kD~~~~--~L~sG~LQLa~gT~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF-- 312 (443)
.++ ..+|+. +..||..++ .|++|+|.||+||+++|||.. |.. ....+|+++|++|+|+..-
T Consensus 88 ~g~~~s~~gLta---~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~--------~~~~~l~eaMEqq~isi~kag 156 (331)
T PF00493_consen 88 SGKGSSAAGLTA---SVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE--------DDRDALHEAMEQQTISIAKAG 156 (331)
T ss_dssp ECCGSTCCCCCE---EECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C--------HHHHHHHHHHHCSCEEECTSS
T ss_pred CCCCcccCCccc---eeccccccceeEEeCCchhcccCceeeecccccccc--------hHHHHHHHHHHcCeeccchhh
Confidence 874 456655 345775555 799999999999999999996 444 3699999999999999322
Q ss_pred -----------------------cccceeeeeccceEEeecCCCCcccCceeeeeccCCCCC---------C---CCC--
Q 013415 313 -----------------------EYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAAS---------F---EVV-- 355 (443)
Q Consensus 313 -----------------------~y~~~e~~~di~vliLS~gKS~~lp~D~~vpl~~~~~~~---------~---~~~-- 355 (443)
++..+..++++|.-+||+ ||+++.+.+..+.. + ...
T Consensus 157 i~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSR-------FDLif~l~D~~d~~~D~~la~~il~~~~~~~~ 229 (331)
T PF00493_consen 157 IVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSR-------FDLIFLLRDKPDEEEDERLAEHILDSHRNGKK 229 (331)
T ss_dssp SEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC--------SEEECC--TTT-HHHHHHHHHHHTTT---S-
T ss_pred hcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhh-------cCEEEEeccccccccccccceEEEeccccccc
Confidence 344555566676666777 99999998765532 0 000
Q ss_pred ----------ChhhHHHHHHHHHHhc-cCCCcCChhHHHHHHHHHHHHhhcC------CCCCHHHHHHHHHHHHHHHHHc
Q 013415 356 ----------PAETLEAWRWYLASVR-SLPHSIESDMQKVVESDLVAARQAD------RSLGGQDLSRLLTMGRLMSASF 418 (443)
Q Consensus 356 ----------~~~~L~~~R~Yl~~~r-~~~~~i~ee~~~~Iq~dFV~~Rq~~------~~it~~~L~~~L~LaRllAlS~ 418 (443)
..-..+.+|+||.+|| ...+.|++++.++|.+.||++|+.. -.+|.+.|..+++||.++|+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~ 309 (331)
T PF00493_consen 230 SKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLR 309 (331)
T ss_dssp -------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCT
T ss_pred cccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHh
Confidence 0223568999999999 6899999999999999999999966 2589999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH
Q 013415 419 GETSLSLEHWQMVKELE 435 (443)
Q Consensus 419 G~~~lt~e~W~~a~~LE 435 (443)
++++++.+|...|++|=
T Consensus 310 lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 310 LRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp TSSECSHHHHHHHHHHH
T ss_pred ccCceeHHHHHHHHHHH
Confidence 99999999999999873
No 12
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=99.93 E-value=6.1e-25 Score=231.45 Aligned_cols=327 Identities=17% Similarity=0.130 Sum_probs=248.0
Q ss_pred CCCcEE--EEEEcCCCCCcccCcEEEEEEEeecCcccccccCCCCCCccccchhhhccCCCCCcceEeEEEEEeecCCCc
Q 013415 71 NSLPCL--VKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDF 148 (443)
Q Consensus 71 ~~~~cl--VKvYd~~~~~lKlNdvve~vGILs~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlH~i~~~~l~~~~~ 148 (443)
+..|.. |-+.++..|..|+||-||+.||+...=..+-.. .+ .| |-..+.+++.+.++-... +
T Consensus 354 GrlPRsk~vILl~DLvD~~kpGdEievTGIy~nn~d~sLN~--kn----gF---------pvfatvi~ANhV~~k~~~-~ 417 (854)
T KOG0477|consen 354 GRLPRSKEVILLADLVDSCKPGDEIEVTGIYTNNFDGSLNT--KN----GF---------PVFATVIEANHVVKKDGK-F 417 (854)
T ss_pred CccccchhheehhhhhhhcCCCcceEEeeeecccccccccc--cC----Cc---------cccceeheehhhhhhccc-c
Confidence 666664 444455577999999999999997532111100 00 11 113556666555443310 0
Q ss_pred CCCCCCCCC-----CcchhHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCc--eeeeeeeeEeecCCCcchhh
Q 013415 149 LHSSPMMEP-----KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDN--VAVGKLSLNLTCLSKESVSV 221 (443)
Q Consensus 149 ~~~~~~~~~-----~~~~~~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~d~--~~lG~~sLnl~~~p~~~~~~ 221 (443)
....-..+. ..+..+.|.+.++..|++.++|+..++-.+.|.|+++|..-..+ ..+|+++|.|.|+|| +
T Consensus 418 ~~~~ltded~k~i~~lskd~~i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPG----T 493 (854)
T KOG0477|consen 418 DVDELTDEDFKEIWELSKDPPIKERIIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPG----T 493 (854)
T ss_pred chhHHhHHHHHHHHHHhcCccHHHHHHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCC----c
Confidence 000000000 11222445677999999999999999999999999999887765 667999999999998 8
Q ss_pred hHHHHHHHHHhhcCceEEEee---ehhhhhcCCCcccccCCCC--cccccceEeeCCcEEEEecCCCCcCcccccchhHH
Q 013415 222 FGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDETQLETGTLNSTGVENA 296 (443)
Q Consensus 222 ~~~~L~~~l~~L~P~s~~lpl---tl~~LN~~~l~P~kD~~~~--~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~ 296 (443)
.++|++++.+.+.||+++.++ |..+|++.. .||+.++ .|++|+|+|||+|+++|||.. ++.-++.
T Consensus 494 aKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v---~KdPvtrEWTLEaGALVLADkGvClIDEFD-------KMndqDR 563 (854)
T KOG0477|consen 494 AKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYV---RKDPVTREWTLEAGALVLADKGVCLIDEFD-------KMNDQDR 563 (854)
T ss_pred cHHHHHHHHHhcCcceeEeccCCccccceeEEE---eeCCccceeeeccCeEEEccCceEEeehhh-------hhccccc
Confidence 999999999999999999987 567777644 7888776 899999999999999999996 3334479
Q ss_pred HHHHHHHHhCeee--------------------------eeecccceeeeeccceEEeecCCCCcccCceeeeeccCCCC
Q 013415 297 RLLKNLMEFQKVE--------------------------YNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAA 350 (443)
Q Consensus 297 ~aL~~li~~Q~v~--------------------------YdF~y~~~e~~~di~vliLS~gKS~~lp~D~~vpl~~~~~~ 350 (443)
..||++|+||.++ |+ +--++..++|+.=-|||+ ||+...+++..++
T Consensus 564 tSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~-~s~tFaqNV~ltePIlSR-------FDiLcVvkD~vd~ 635 (854)
T KOG0477|consen 564 TSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYN-PSLTFAQNVDLTEPILSR-------FDILCVVKDTVDP 635 (854)
T ss_pred chHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccC-Cccchhhccccccchhhh-------cceeeeeecccCc
Confidence 9999999999999 65 556788889999999999 9998888866543
Q ss_pred C---------C------CC-----------C---C--hhhHHHHHHHHHHhccC-CCcCChhHHHHHHHHHHHHhhcCC-
Q 013415 351 S---------F------EV-----------V---P--AETLEAWRWYLASVRSL-PHSIESDMQKVVESDLVAARQADR- 397 (443)
Q Consensus 351 ~---------~------~~-----------~---~--~~~L~~~R~Yl~~~r~~-~~~i~ee~~~~Iq~dFV~~Rq~~~- 397 (443)
. + ++ . . +.--+.+|+||.|||.. -+.+.+--++.|..=|+.+||..-
T Consensus 636 ~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~ 715 (854)
T KOG0477|consen 636 VQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMA 715 (854)
T ss_pred hhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccc
Confidence 2 0 00 0 0 11227899999999975 667777667889999999999763
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 013415 398 ----SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELE 435 (443)
Q Consensus 398 ----~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~LE 435 (443)
+||.+-+..++++++++|+++.+..++.+|...|++..
T Consensus 716 tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ 757 (854)
T KOG0477|consen 716 TGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVM 757 (854)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHH
Confidence 58999999999999999999999999999999998753
No 13
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.65 E-value=1.6e-06 Score=95.80 Aligned_cols=229 Identities=16% Similarity=0.152 Sum_probs=156.8
Q ss_pred hcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceE------------------
Q 013415 177 LGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ------------------ 238 (443)
Q Consensus 177 l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~------------------ 238 (443)
+-|...+...|++.+++. + +| ++.|.|.++ +.++.|.+.|..++|...
T Consensus 6 ivGq~~~~~al~~~av~~---~-----~g--~vli~G~~G----tgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~ 71 (633)
T TIGR02442 6 IVGQEDLKLALLLNAVDP---R-----IG--GVLIRGEKG----TAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWC 71 (633)
T ss_pred hcChHHHHHHHHHHhhCC---C-----CC--eEEEEcCCC----CcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccC
Confidence 457787888888877763 1 23 389999998 789999999999997311
Q ss_pred ------------------EEeeehhhhhcCCCcccccCC----CC--cccccceEeeCCcEEEEecCC-CCcCcccccch
Q 013415 239 ------------------CIPLTVNYLNTASLAPKKDYQ----TN--RLIPGVLQLADGSHLIIDETQ-LETGTLNSTGV 293 (443)
Q Consensus 239 ------------------~lpltl~~LN~~~l~P~kD~~----~~--~L~sG~LQLa~gT~lviDEt~-L~~G~L~~~Gv 293 (443)
.+|+++. ...+.-..|.. ++ .+..|.|..|+||+|+|||.. |...
T Consensus 72 ~~~~~~~~~~~~~~~pfv~~p~~~t---~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~------- 141 (633)
T TIGR02442 72 EECRRKYRPSEQRPVPFVNLPLGAT---EDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH------- 141 (633)
T ss_pred hhhhhcccccccCCCCeeeCCCCCc---HHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH-------
Confidence 1222110 00111111111 12 467999999999999999997 4433
Q ss_pred hHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCCccc------CceeeeeccCCCCCC---------C-CCCh
Q 013415 294 ENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVP------ADLVIPFQPSSAASF---------E-VVPA 357 (443)
Q Consensus 294 ~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~~lp------~D~~vpl~~~~~~~~---------~-~~~~ 357 (443)
-..+|.++|+.+++.+.-.-....+++++.++..+.-....++ +++.|.+.+...... . ...+
T Consensus 142 -~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~ 220 (633)
T TIGR02442 142 -LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADP 220 (633)
T ss_pred -HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCc
Confidence 4788999999998888766667788888877776432211222 555665554322110 0 0001
Q ss_pred --------hhHHHHHHHHHHhccC--CCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHH
Q 013415 358 --------ETLEAWRWYLASVRSL--PHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEH 427 (443)
Q Consensus 358 --------~~L~~~R~Yl~~~r~~--~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~ 427 (443)
.+...++++|..+|.. .+.|++++.++|.+-+++.+-. +.+-...++++||++|...|++.++.+|
T Consensus 221 ~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~----s~Ra~i~~~r~Ara~AaL~gr~~V~~~D 296 (633)
T TIGR02442 221 EAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVD----GHRADIVMARAARALAALDGRRRVTAED 296 (633)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC----CccHHHHHHHHHHHHHHHcCCCcCCHHH
Confidence 1223667889999864 4689999999999988887532 3577888999999999999999999999
Q ss_pred HHHHHHH
Q 013415 428 WQMVKEL 434 (443)
Q Consensus 428 W~~a~~L 434 (443)
.+.|.+|
T Consensus 297 v~~A~~l 303 (633)
T TIGR02442 297 VREAAEL 303 (633)
T ss_pred HHHHHHH
Confidence 9999876
No 14
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.48 E-value=4.5e-06 Score=91.51 Aligned_cols=210 Identities=16% Similarity=0.159 Sum_probs=143.1
Q ss_pred eeEeecCCCcchhhhHHHHHHHHHhhcCce---EEEee--ehhhhhcCCCcccccCCCC--cccccceEeeCCcEEEEec
Q 013415 208 SLNLTCLSKESVSVFGNQVRLSVQNLLPFT---QCIPL--TVNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDE 280 (443)
Q Consensus 208 sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s---~~lpl--tl~~LN~~~l~P~kD~~~~--~L~sG~LQLa~gT~lviDE 280 (443)
+|.|.|.|+ +.++.|.+.|..+.|.. ..+|. |-+.|-... --.....++ .+..|.|..++||.|+|||
T Consensus 18 ~vLl~G~~G----tgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i-dl~~~~~~g~~~~~~G~L~~A~~GvL~lDE 92 (589)
T TIGR02031 18 GVAIRARAG----TGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI-DVEESLAGGQRVTQPGLLDEAPRGVLYVDM 92 (589)
T ss_pred eEEEEcCCC----cHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch-hhhhhhhcCcccCCCCCeeeCCCCcEeccc
Confidence 688999998 78999999999999873 33442 222211100 000001123 4789999999999999999
Q ss_pred CC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCC--Cccc------CceeeeeccCCCCC
Q 013415 281 TQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS--NIVP------ADLVIPFQPSSAAS 351 (443)
Q Consensus 281 t~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS--~~lp------~D~~vpl~~~~~~~ 351 (443)
.. |... -..+|.++|+.+.|.+.=.-.....++++.++..+.... --+| +++.|.+.......
T Consensus 93 i~rl~~~--------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~ 164 (589)
T TIGR02031 93 ANLLDDG--------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQD 164 (589)
T ss_pred hhhCCHH--------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHH
Confidence 96 4433 478899999999988774455677888888887666432 1222 33333332221110
Q ss_pred -----C----C---CCChhhHHHHHHHHHHhccC--CCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 013415 352 -----F----E---VVPAETLEAWRWYLASVRSL--PHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSAS 417 (443)
Q Consensus 352 -----~----~---~~~~~~L~~~R~Yl~~~r~~--~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS 417 (443)
+ . .....+....+.+|..+|.. .+.|++++.++|.+-.++++-. +.+-...+++.||++|+.
T Consensus 165 er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~----s~Ra~i~~~r~ArA~Aal 240 (589)
T TIGR02031 165 LRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGIS----GHRADLFAVRAAKAHAAL 240 (589)
T ss_pred HHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCC----CccHHHHHHHHHHHHHHH
Confidence 0 0 00112345678889899864 5789999999998888776543 246677899999999999
Q ss_pred cCCCCCCHHHHHHHHHH
Q 013415 418 FGETSLSLEHWQMVKEL 434 (443)
Q Consensus 418 ~G~~~lt~e~W~~a~~L 434 (443)
.|++.++.||.+.|..|
T Consensus 241 ~gr~~V~~~Dv~~a~~l 257 (589)
T TIGR02031 241 HGRTEVTEEDLKLAVEL 257 (589)
T ss_pred hCCCCCCHHHHHHHHHH
Confidence 99999999999999877
No 15
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.15 E-value=0.00028 Score=72.45 Aligned_cols=230 Identities=16% Similarity=0.158 Sum_probs=139.9
Q ss_pred hcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeee------hh---hh
Q 013415 177 LGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLT------VN---YL 247 (443)
Q Consensus 177 l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lplt------l~---~L 247 (443)
+-|...+.+.|++.++.. |--++.|.|.|| +.++.|.+.+..++|.-...... +. .+
T Consensus 10 i~Gq~~~~~~l~~~~~~~----------~~~~vLl~G~pG----~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~ 75 (334)
T PRK13407 10 IVGQEEMKQAMVLTAIDP----------GIGGVLVFGDRG----TGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEW 75 (334)
T ss_pred hCCHHHHHHHHHHHHhcc----------CCCcEEEEcCCC----CCHHHHHHHHHHHCCCcchhcccccccCcccCCccc
Confidence 347888888888877631 334699999998 78999999999999863322111 00 00
Q ss_pred ----hcC---CCcccc---------------cCC----CC--cccccceEeeCCcEEEEecCC-CCcCcccccchhHHHH
Q 013415 248 ----NTA---SLAPKK---------------DYQ----TN--RLIPGVLQLADGSHLIIDETQ-LETGTLNSTGVENARL 298 (443)
Q Consensus 248 ----N~~---~l~P~k---------------D~~----~~--~L~sG~LQLa~gT~lviDEt~-L~~G~L~~~Gv~N~~a 298 (443)
... ...|.. |++ +| .+..|.|..++||.|+|||.. +.. +-..+
T Consensus 76 ~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~--------~~q~~ 147 (334)
T PRK13407 76 AHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED--------HIVDL 147 (334)
T ss_pred ccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH--------HHHHH
Confidence 000 001111 111 22 488999999999999999997 333 24689
Q ss_pred HHHHHHhCeeeeeecccceeeeeccceEEeecCCC--Cccc------CceeeeeccCCCCC-----C-----CCCChh--
Q 013415 299 LKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS--NIVP------ADLVIPFQPSSAAS-----F-----EVVPAE-- 358 (443)
Q Consensus 299 L~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS--~~lp------~D~~vpl~~~~~~~-----~-----~~~~~~-- 358 (443)
|.++|+.+.+.+.-.-....+ ..++++++..-. .-+| |.+.+.+.+..... + ....+.
T Consensus 148 Lle~mee~~v~v~r~G~~~~~--p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~ 225 (334)
T PRK13407 148 LLDVAQSGENVVEREGLSIRH--PARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAF 225 (334)
T ss_pred HHHHHHcCCeEEEECCeEEec--CCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhh
Confidence 999999988766533334333 446666655321 1222 33444443221100 0 000000
Q ss_pred ------hHHHHHHHHHHhcc--CCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 013415 359 ------TLEAWRWYLASVRS--LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQM 430 (443)
Q Consensus 359 ------~L~~~R~Yl~~~r~--~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~ 430 (443)
+-...+.-|..+|. ..+.+++++.+||.+--.+.|... . --++. +++.||++|+..|++.++.||.+.
T Consensus 226 ~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s--~-Ra~i~-l~~aA~a~A~l~Gr~~V~~~Di~~ 301 (334)
T PRK13407 226 MAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDG--L-RGELT-LLRAARALAAFEGAEAVGRSHLRS 301 (334)
T ss_pred hccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCC--c-hHHHH-HHHHHHHHHHHcCCCeeCHHHHHH
Confidence 00122234444544 357899999999988877777642 2 23344 999999999999999999999987
Q ss_pred HHHH
Q 013415 431 VKEL 434 (443)
Q Consensus 431 a~~L 434 (443)
+..+
T Consensus 302 ~~~~ 305 (334)
T PRK13407 302 VATM 305 (334)
T ss_pred HHHH
Confidence 7643
No 16
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.14 E-value=6.4e-05 Score=80.99 Aligned_cols=229 Identities=16% Similarity=0.127 Sum_probs=140.9
Q ss_pred cCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceE---EEeee----hhh----
Q 013415 178 GNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ---CIPLT----VNY---- 246 (443)
Q Consensus 178 ~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~---~lplt----l~~---- 246 (443)
.|...+.+.+-+.+. |.-++-|.|.|+ +-++.|.+.+..++|... .+..+ +.+
T Consensus 195 ~Gq~~~~~al~~aa~------------~g~~vlliG~pG----sGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~ 258 (499)
T TIGR00368 195 KGQQHAKRALEIAAA------------GGHNLLLFGPPG----SGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLID 258 (499)
T ss_pred cCcHHHHhhhhhhcc------------CCCEEEEEecCC----CCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcc
Confidence 456666665555432 445788999998 568888888888887632 11111 111
Q ss_pred ---hhcCCCc-cc----ccC--CCC-cccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeeccc
Q 013415 247 ---LNTASLA-PK----KDY--QTN-RLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYY 315 (443)
Q Consensus 247 ---LN~~~l~-P~----kD~--~~~-~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~ 315 (443)
....+|. |. .+. ..+ ...+|.|.+|+||+|+|||.. +.+-.-...|..+|+.+.+.+.=.-.
T Consensus 259 ~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~-------e~~~~~~~~L~~~LE~~~v~i~r~g~ 331 (499)
T TIGR00368 259 RKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELP-------EFKRSVLDALREPIEDGSISISRASA 331 (499)
T ss_pred ccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChh-------hCCHHHHHHHHHHHHcCcEEEEecCc
Confidence 1112221 11 000 011 368899999999999999995 23333478899999999987664444
Q ss_pred ceeeeeccceEEeecCCC--C--------------------------cccCceeeeeccCCCCCCCC-CChhhHHHHHHH
Q 013415 316 KMEMIADVQMLILSEGKS--N--------------------------IVPADLVIPFQPSSAASFEV-VPAETLEAWRWY 366 (443)
Q Consensus 316 ~~e~~~di~vliLS~gKS--~--------------------------~lp~D~~vpl~~~~~~~~~~-~~~~~L~~~R~Y 366 (443)
...++.++.++.-+.... . +=-+|+.+.+.+.....+.. ...+.-..+|.=
T Consensus 332 ~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~r 411 (499)
T TIGR00368 332 KIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQR 411 (499)
T ss_pred ceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHH
Confidence 566788887777775321 0 01177777777553222111 111122344444
Q ss_pred HHHhccC-------------C-----------CcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCC
Q 013415 367 LASVRSL-------------P-----------HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETS 422 (443)
Q Consensus 367 l~~~r~~-------------~-----------~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~ 422 (443)
+..||.. + ..++++..+.+++.|-. ..+|.+..|++|++||.+|-..|.+.
T Consensus 412 V~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~-----~~lS~R~~~rilrvArTiAdL~g~~~ 486 (499)
T TIGR00368 412 VIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNK-----LGLSSRATHRILKVARTIADLKEEKN 486 (499)
T ss_pred HHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHh-----cCCCchHHHHHHHHHHHHHhhcCCCC
Confidence 4444311 1 13455655555554422 24899999999999999999999999
Q ss_pred CCHHHHHHHHHH
Q 013415 423 LSLEHWQMVKEL 434 (443)
Q Consensus 423 lt~e~W~~a~~L 434 (443)
++.+|...|+.+
T Consensus 487 i~~~hv~eA~~~ 498 (499)
T TIGR00368 487 ISREHLAEAIEY 498 (499)
T ss_pred CCHHHHHHHHhc
Confidence 999999999864
No 17
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.10 E-value=0.00014 Score=74.75 Aligned_cols=231 Identities=15% Similarity=0.153 Sum_probs=144.5
Q ss_pred hcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEe---ee----------
Q 013415 177 LGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIP---LT---------- 243 (443)
Q Consensus 177 l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lp---lt---------- 243 (443)
+-|.+-+...|++.+++-. +| ++-|.|.++ +.++.|.+.+..+.|....+- ..
T Consensus 6 ivgq~~~~~al~~~~~~~~--------~g--~vli~G~~G----~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (337)
T TIGR02030 6 IVGQDEMKLALLLNVIDPK--------IG--GVMVMGDRG----TGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMC 71 (337)
T ss_pred cccHHHHHHHHHHHhcCCC--------CC--eEEEEcCCC----CCHHHHHHHHHHhhcccccccCCCCCCCCCCccccC
Confidence 4578888999999998741 23 466899998 678889999988887532111 00
Q ss_pred ------------hhhhh-cCCC--ccc----------ccC----CCC--cccccceEeeCCcEEEEecCC-CCcCccccc
Q 013415 244 ------------VNYLN-TASL--APK----------KDY----QTN--RLIPGVLQLADGSHLIIDETQ-LETGTLNST 291 (443)
Q Consensus 244 ------------l~~LN-~~~l--~P~----------kD~----~~~--~L~sG~LQLa~gT~lviDEt~-L~~G~L~~~ 291 (443)
+..+- ..+| .|. -|+ .+| .+..|.|+-|+||+|+|||.. |...
T Consensus 72 ~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~----- 146 (337)
T TIGR02030 72 EEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDH----- 146 (337)
T ss_pred hHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHH-----
Confidence 00000 0000 111 011 022 468899999999999999997 4332
Q ss_pred chhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCC--Cccc------CceeeeeccCCCCC-----CC---CC
Q 013415 292 GVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS--NIVP------ADLVIPFQPSSAAS-----FE---VV 355 (443)
Q Consensus 292 Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS--~~lp------~D~~vpl~~~~~~~-----~~---~~ 355 (443)
-..+|-++|+.+.+.|.=.-.. ...+.++++++..-- .-+| +.+.+.+....... +. ..
T Consensus 147 ---~Q~~Ll~~l~~g~~~v~r~G~~--~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~ 221 (337)
T TIGR02030 147 ---LVDVLLDVAASGWNVVEREGIS--IRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEY 221 (337)
T ss_pred ---HHHHHHHHHHhCCeEEEECCEE--EEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhc
Confidence 4677889999887665422222 345567777766411 0122 33333333221100 00 00
Q ss_pred --Ch-h-------hHHHHHHHHHHhcc--CCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 013415 356 --PA-E-------TLEAWRWYLASVRS--LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSL 423 (443)
Q Consensus 356 --~~-~-------~L~~~R~Yl~~~r~--~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~l 423 (443)
.+ . +-...+.-|..+|. ....+++++.++|.+-..+.|-. +.+---.|++.||++|+..|++.+
T Consensus 222 ~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~----s~Ra~i~l~raArA~Aal~GR~~V 297 (337)
T TIGR02030 222 DADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVD----GLRGELTLNRAAKALAAFEGRTEV 297 (337)
T ss_pred ccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCC----CCcHHHHHHHHHHHHHHHcCCCCC
Confidence 00 0 11244667777775 36789999999999988777732 346777899999999999999999
Q ss_pred CHHHHHHHHHHH
Q 013415 424 SLEHWQMVKELE 435 (443)
Q Consensus 424 t~e~W~~a~~LE 435 (443)
+.+|.+.+..+=
T Consensus 298 ~~dDv~~~a~~v 309 (337)
T TIGR02030 298 TVDDIRRVAVLA 309 (337)
T ss_pred CHHHHHHHHHHH
Confidence 999999988763
No 18
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.08 E-value=8e-05 Score=82.07 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=114.9
Q ss_pred cccccceEeeCCcEEEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecc--------cceeeeeccceEEeecCC
Q 013415 262 RLIPGVLQLADGSHLIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEY--------YKMEMIADVQMLILSEGK 332 (443)
Q Consensus 262 ~L~sG~LQLa~gT~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y--------~~~e~~~di~vliLS~gK 332 (443)
++++|.|..|+||.|+|||.. |... -...|..+++.|++...-.. .+..+|+|+.++..+.-.
T Consensus 207 ~i~~G~L~~AngGtL~Ldei~~L~~~--------~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~ 278 (608)
T TIGR00764 207 RVEAGAIHRAHKGVLYIDEIKTMPLE--------VQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD 278 (608)
T ss_pred cCCCCceEECCCCEEEEEChHhCCHH--------HHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH
Confidence 679999999999999999996 4422 36799999999998765221 134567777776666532
Q ss_pred --CCccc-----Cc---eeeeeccCCCCCCCCCChhhHHHHHHHHHHh-cc--CCCcCChhHHHHHHHHHHHHhhcC-C-
Q 013415 333 --SNIVP-----AD---LVIPFQPSSAASFEVVPAETLEAWRWYLASV-RS--LPHSIESDMQKVVESDLVAARQAD-R- 397 (443)
Q Consensus 333 --S~~lp-----~D---~~vpl~~~~~~~~~~~~~~~L~~~R~Yl~~~-r~--~~~~i~ee~~~~Iq~dFV~~Rq~~-~- 397 (443)
..+-| ++ +.+.+.+.. +.+++....+..|+... +. ....+++++.+.|.+++. |.++ +
T Consensus 279 ~l~~l~~~l~~rf~~y~v~v~~~~~~-----~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~--R~ag~r~ 351 (608)
T TIGR00764 279 DLEGMHPALRSRIRGYGYEVYMKDTM-----PDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQ--RRAGRKD 351 (608)
T ss_pred HHhhcCHHHHHHhcCCeEEEEeeccC-----CCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHH--HHHhccc
Confidence 11111 23 333333222 11344556677777763 32 235789999888877653 3332 2
Q ss_pred --CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhhc
Q 013415 398 --SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERL 442 (443)
Q Consensus 398 --~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~LE~~R~~Rl 442 (443)
+++.++|..+++.|+..|...|+..++.+|.++|++.=..|..++
T Consensus 352 ~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~~~~i 398 (608)
T TIGR00764 352 HLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTLEKQL 398 (608)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999988766665543
No 19
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.07 E-value=0.00011 Score=79.30 Aligned_cols=215 Identities=17% Similarity=0.188 Sum_probs=131.9
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCceE---EEeee----hhhh-------hcCCC-cccccCC------CC-c
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ---CIPLT----VNYL-------NTASL-APKKDYQ------TN-R 262 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~---~lplt----l~~L-------N~~~l-~P~kD~~------~~-~ 262 (443)
|.-++-|.|.|+ .-++.|.+.|..++|... .+..| +.++ ...+| .|.-.-. .+ .
T Consensus 209 ~G~~llliG~~G----sGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~ 284 (506)
T PRK09862 209 GGHNLLLIGPPG----TGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAI 284 (506)
T ss_pred CCcEEEEECCCC----CcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCce
Confidence 445788999998 568888999998888532 12221 1221 11122 1221100 01 3
Q ss_pred ccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCC--------
Q 013415 263 LIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN-------- 334 (443)
Q Consensus 263 L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~-------- 334 (443)
..+|.|.+|+||.|+|||.. +..-+-+.+|.+.|+.+++...=.-....+|+++.++..+...-.
T Consensus 285 ~~pG~l~~A~gGvLfLDEi~-------e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c 357 (506)
T PRK09862 285 PGPGEISLAHNGVLFLDELP-------EFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHN 357 (506)
T ss_pred ehhhHhhhccCCEEecCCch-------hCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCC
Confidence 78899999999999999974 233345899999999999876644455667777776666542210
Q ss_pred ------------------cccCceeeeeccCCCCCCCC--CChhhHHHHHHHHHHhcc--------CC-----------C
Q 013415 335 ------------------IVPADLVIPFQPSSAASFEV--VPAETLEAWRWYLASVRS--------LP-----------H 375 (443)
Q Consensus 335 ------------------~lp~D~~vpl~~~~~~~~~~--~~~~~L~~~R~Yl~~~r~--------~~-----------~ 375 (443)
+=-+|+++.+.+.....+.. ...+.-..+|+-+..+|. .+ .
T Consensus 358 ~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~ 437 (506)
T PRK09862 358 RCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFC 437 (506)
T ss_pred CcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHh
Confidence 01277777776442111100 000111122222221111 01 2
Q ss_pred cCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 013415 376 SIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELE 435 (443)
Q Consensus 376 ~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~LE 435 (443)
.++++..+.+++.|.++ .++.+..+++|++||.+|...|++.++.+|...|+.+=
T Consensus 438 ~l~~~~~~~l~~~~~~~-----~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 438 KLESEDARWLEETLIHL-----GLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYR 492 (506)
T ss_pred CCCHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence 45666666666655443 47899999999999999999999999999999999874
No 20
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.79 E-value=0.002 Score=66.66 Aligned_cols=230 Identities=12% Similarity=0.121 Sum_probs=139.9
Q ss_pred hcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeee--------hhh--
Q 013415 177 LGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLT--------VNY-- 246 (443)
Q Consensus 177 l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lplt--------l~~-- 246 (443)
+-|.+.++..|++.+++- .+| .+.|.|.+| +-++.+.+.+..++|....++-. .+-
T Consensus 19 ivGq~~~k~al~~~~~~p--------~~~--~vli~G~~G----tGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~ 84 (350)
T CHL00081 19 IVGQEEMKLALILNVIDP--------KIG--GVMIMGDRG----TGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMS 84 (350)
T ss_pred HhChHHHHHHHHHhccCC--------CCC--eEEEEcCCC----CCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhc
Confidence 346778899999888772 234 356999998 55677777777777654433211 000
Q ss_pred --hh--------------cCCCc--c---cccC-----------CC--CcccccceEeeCCcEEEEecCC-CCcCccccc
Q 013415 247 --LN--------------TASLA--P---KKDY-----------QT--NRLIPGVLQLADGSHLIIDETQ-LETGTLNST 291 (443)
Q Consensus 247 --LN--------------~~~l~--P---~kD~-----------~~--~~L~sG~LQLa~gT~lviDEt~-L~~G~L~~~ 291 (443)
+. ..+|. | ..|. .. ..+..|.|.-|+||.|+|||.. |...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~----- 159 (350)
T CHL00081 85 DEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH----- 159 (350)
T ss_pred hhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH-----
Confidence 00 00000 0 0110 01 1457999999999999999997 4433
Q ss_pred chhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCC--Cccc------CceeeeeccCCCCC-----C---CCC
Q 013415 292 GVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS--NIVP------ADLVIPFQPSSAAS-----F---EVV 355 (443)
Q Consensus 292 Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS--~~lp------~D~~vpl~~~~~~~-----~---~~~ 355 (443)
-..+|-++|+.+++.+.-.-.. .....+++++++.-- .-+| +.+.+.+....... + ...
T Consensus 160 ---~Q~~LLeam~e~~~~ier~G~s--~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~ 234 (350)
T CHL00081 160 ---LVDILLDSAASGWNTVEREGIS--IRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSF 234 (350)
T ss_pred ---HHHHHHHHHHhCCeEEeeCCee--eecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhcc
Confidence 3566888999888877533333 455557777775321 0122 33333333221111 0 000
Q ss_pred --Chh-hHH-------HHHHHHHHhcc--CCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 013415 356 --PAE-TLE-------AWRWYLASVRS--LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSL 423 (443)
Q Consensus 356 --~~~-~L~-------~~R~Yl~~~r~--~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~l 423 (443)
.+. .+. ..+.=|..+|. ..+.+++++.++|.+--.+.|.. +.+---.+++.||++|+..|++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~----s~Ra~i~l~raArA~Aal~GR~~V 310 (350)
T CHL00081 235 DKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVD----GLRGDIVTNRAAKALAAFEGRTEV 310 (350)
T ss_pred ccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCC----CChHHHHHHHHHHHHHHHcCCCCC
Confidence 000 001 12344455554 36789999999998877777753 457777799999999999999999
Q ss_pred CHHHHHHHHHH
Q 013415 424 SLEHWQMVKEL 434 (443)
Q Consensus 424 t~e~W~~a~~L 434 (443)
+.||.+.+..+
T Consensus 311 ~pdDv~~~a~~ 321 (350)
T CHL00081 311 TPKDIFKVITL 321 (350)
T ss_pred CHHHHHHHHHH
Confidence 99999998765
No 21
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.75 E-value=0.0012 Score=72.54 Aligned_cols=203 Identities=17% Similarity=0.161 Sum_probs=137.3
Q ss_pred eEeecCCCcchhhhHHHHHHHHHhhcCc---eEEEeee--hhhhhcC-CCcccccCCCC--cccccceEeeCCcEEEEec
Q 013415 209 LNLTCLSKESVSVFGNQVRLSVQNLLPF---TQCIPLT--VNYLNTA-SLAPKKDYQTN--RLIPGVLQLADGSHLIIDE 280 (443)
Q Consensus 209 Lnl~~~p~~~~~~~~~~L~~~l~~L~P~---s~~lplt--l~~LN~~-~l~P~kD~~~~--~L~sG~LQLa~gT~lviDE 280 (443)
+.|.|..+ +.++.|...|..|+|. ..-+|++ -+.|--. .+.-. -..| .++.|.|-+|+||+|+|||
T Consensus 28 v~i~g~~G----~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~--l~~g~~~~~pGlla~Ah~GvL~lDe 101 (584)
T PRK13406 28 VVLRARAG----PVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAAT--LRAGRPVAQRGLLAEADGGVLVLAM 101 (584)
T ss_pred EEEEcCCC----cHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhH--hhcCCcCCCCCceeeccCCEEEecC
Confidence 56777776 7899999999999985 2334432 2222110 00000 0012 3789999999999999999
Q ss_pred CCCCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCC-CC-ccc------CceeeeeccCCCCCC
Q 013415 281 TQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGK-SN-IVP------ADLVIPFQPSSAASF 352 (443)
Q Consensus 281 t~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gK-S~-~lp------~D~~vpl~~~~~~~~ 352 (443)
-.+-.- +=+.+|-+.|+...|...=.-.++.+|.+.-++-+-++. .. -+| |++.|.+........
T Consensus 102 ~n~~~~-------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 102 AERLEP-------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDA 174 (584)
T ss_pred cccCCH-------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHh
Confidence 973322 248999999999999886556677778777766654443 10 122 777777765432221
Q ss_pred --CCCChhhHHHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 013415 353 --EVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSL-GGQDLSRLLTMGRLMSASFGETSLSLEHWQ 429 (443)
Q Consensus 353 --~~~~~~~L~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~i-t~~~L~~~L~LaRllAlS~G~~~lt~e~W~ 429 (443)
...+..++...|.-+ .+..+++++.++|-+-+... .+ +.+-.+.++++||.+|...|++.++.+|..
T Consensus 175 ~~~~~~~~~I~~AR~rl-----~~v~v~~~~l~~i~~~~~~~-----gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 175 REIPIDADDIAAARARL-----PAVGPPPEAIAALCAAAAAL-----GIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred cccCCCHHHHHHHHHHH-----ccCCCCHHHHHHHHHHHHHh-----CCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 112334555666533 36788999888876544321 34 778889999999999999999999999999
Q ss_pred HHHHH
Q 013415 430 MVKEL 434 (443)
Q Consensus 430 ~a~~L 434 (443)
.|..|
T Consensus 245 ~Aa~l 249 (584)
T PRK13406 245 LAARL 249 (584)
T ss_pred HHHHH
Confidence 99876
No 22
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.66 E-value=0.012 Score=63.30 Aligned_cols=233 Identities=14% Similarity=0.112 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceE----
Q 013415 163 KETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ---- 238 (443)
Q Consensus 163 ~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~---- 238 (443)
...-..|...|.+.+.|-+.+-+.+++.++++ -++-|.|.|| +.++.|.+.|...+....
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aalag------------~hVLL~GpPG----TGKT~LAraLa~~~~~~~~F~~ 71 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALSG------------ESVFLLGPPG----IAKSLIARRLKFAFQNARAFEY 71 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHccC------------CCEEEECCCC----hhHHHHHHHHHHHhcccCccee
Confidence 34457789999999999999999999999886 3588999998 778888888888776421
Q ss_pred -EEee-ehhhhhc-CCCccccc-CCCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeecc
Q 013415 239 -CIPL-TVNYLNT-ASLAPKKD-YQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEY 314 (443)
Q Consensus 239 -~lpl-tl~~LN~-~~l~P~kD-~~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y 314 (443)
...+ |.+.|-. ..+...++ ..-.+...|.|.-++ .+++||.. ..+-+=..+|-++|+...+.-+
T Consensus 72 ~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~-------rasp~~QsaLLeam~Er~~t~g--- 139 (498)
T PRK13531 72 LMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIW-------KAGPAILNTLLTAINERRFRNG--- 139 (498)
T ss_pred eeeeecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccc-------cCCHHHHHHHHHHHHhCeEecC---
Confidence 1111 2222211 00111121 111145677776666 99999994 3344448899999988877643
Q ss_pred cceeeeeccceEEeecCCCCcccC------------ceeeeeccCCCC-C---------------CC---CCChhhHHHH
Q 013415 315 YKMEMIADVQMLILSEGKSNIVPA------------DLVIPFQPSSAA-S---------------FE---VVPAETLEAW 363 (443)
Q Consensus 315 ~~~e~~~di~vliLS~gKS~~lp~------------D~~vpl~~~~~~-~---------------~~---~~~~~~L~~~ 363 (443)
.-..+++.|+++.+.. =+|- -+.+.+.+-... . .. ..+.+++..|
T Consensus 140 -~~~~~lp~rfiv~ATN---~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~l 215 (498)
T PRK13531 140 -AHEEKIPMRLLVTASN---ELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQW 215 (498)
T ss_pred -CeEEeCCCcEEEEECC---CCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHH
Confidence 6668888899998873 2332 112222221110 0 00 0234566666
Q ss_pred HHHHHHhccCCCcCChhHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 013415 364 RWYLASVRSLPHSIESDMQKVVESDLVAARQAD--RSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVK 432 (443)
Q Consensus 364 R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~--~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~ 432 (443)
+..+. .+.+++++.++|.+=--..|... ..++.+---.+++++|+.|...|++.++.+|...+.
T Consensus 216 q~~v~-----~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ll~ 281 (498)
T PRK13531 216 QKEIG-----KITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLILLK 281 (498)
T ss_pred HHHhc-----ceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHHHhH
Confidence 65553 36788998888844322223222 238999999999999999999999999999977443
No 23
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.94 E-value=0.007 Score=67.22 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=104.5
Q ss_pred cccccceEeeCCcEEEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecc---------cceeeeeccceEEeecC
Q 013415 262 RLIPGVLQLADGSHLIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEY---------YKMEMIADVQMLILSEG 331 (443)
Q Consensus 262 ~L~sG~LQLa~gT~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y---------~~~e~~~di~vliLS~g 331 (443)
++.+|.|.-|+||.|+|||.. |... -...|..+|+.+++... .+ .+-.+|+|+.++..+..
T Consensus 216 ~i~~G~L~kAnGGtL~LDei~~L~~~--------~q~~Llr~L~~~~i~i~-g~~e~~~~~~~~~~~ip~dvrvI~a~~~ 286 (637)
T PRK13765 216 RVEAGAIHKAHKGVLFIDEINTLDLE--------SQQSLLTAMQEKKFPIT-GQSERSSGAMVRTEPVPCDFIMVAAGNL 286 (637)
T ss_pred cCCCCceeECCCcEEEEeChHhCCHH--------HHHHHHHHHHhCCEEec-ccccccccccCCCcceeeeeEEEEecCc
Confidence 579999999999999999996 5433 36789999999988763 11 24567888887766653
Q ss_pred CCC-cccCceeeeeccC-CCCCCCCCChhhHHHHHHHHHHhc----c--CCCcCChhHHHHHHHHHHHHhhcC-C---CC
Q 013415 332 KSN-IVPADLVIPFQPS-SAASFEVVPAETLEAWRWYLASVR----S--LPHSIESDMQKVVESDLVAARQAD-R---SL 399 (443)
Q Consensus 332 KS~-~lp~D~~vpl~~~-~~~~~~~~~~~~L~~~R~Yl~~~r----~--~~~~i~ee~~~~Iq~dFV~~Rq~~-~---~i 399 (443)
.-. .+.-|+.-.++.- ..-.+....+...+.++.|+..+. . .-..|++++...|-+.+ .|.+. + +.
T Consensus 287 ~ll~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~--~R~ag~r~~lsl 364 (637)
T PRK13765 287 DALENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREA--KRRAGRKGHLTL 364 (637)
T ss_pred CHHHhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHH--HHHhCCcccccc
Confidence 210 0111111111100 000011112223455666665432 2 23478999988888877 34443 2 35
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 400 GGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 400 t~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
..++|..+++.|--+|+..|...++.++..+|+.
T Consensus 365 ~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 365 KLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred CHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 6899999999999999999999999999988864
No 24
>CHL00181 cbbX CbbX; Provisional
Probab=96.55 E-value=0.094 Score=52.74 Aligned_cols=230 Identities=18% Similarity=0.167 Sum_probs=122.0
Q ss_pred HHHHHHHHHhhhcCcHHHHH----HHHHHHhcccccccCceee-eeeeeEeecCCCcchhhhHHHHHHHHHhh------c
Q 013415 166 RESLLRHLTSILGNDGIAAH----LMLLHLLSRVHARIDNVAV-GKLSLNLTCLSKESVSVFGNQVRLSVQNL------L 234 (443)
Q Consensus 166 R~~Ll~~La~~l~GD~laAe----yLLL~L~S~V~~r~d~~~l-G~~sLnl~~~p~~~~~~~~~~L~~~l~~L------~ 234 (443)
.+.+...|...+.|-.-+++ ++.+..+.+...+.+..+. ..+++-|.|.|| +-++.+...+... +
T Consensus 14 ~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pG----tGKT~lAr~la~~~~~~g~~ 89 (287)
T CHL00181 14 IQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPG----TGKTTVALKMADILYKLGYI 89 (287)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCC----CCHHHHHHHHHHHHHHcCCC
Confidence 45567777776777655554 3333333333333322222 346789999998 4455555555443 3
Q ss_pred CceEEEeeehhhhhcCCCcccccCCCCcccccceEeeCCcEEEEecCC-CC-cCcccccchhHHHHHHHHHHhCeeeeee
Q 013415 235 PFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQ-LE-TGTLNSTGVENARLLKNLMEFQKVEYNF 312 (443)
Q Consensus 235 P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa~gT~lviDEt~-L~-~G~L~~~Gv~N~~aL~~li~~Q~v~YdF 312 (443)
+...++.++.+.|.... -..+..-..+.+.-+.|++|+|||.. |. .+.-+..|-+-+..|..+|+.+.
T Consensus 90 ~~~~~~~v~~~~l~~~~-----~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~----- 159 (287)
T CHL00181 90 KKGHLLTVTRDDLVGQY-----IGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR----- 159 (287)
T ss_pred CCCceEEecHHHHHHHH-----hccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-----
Confidence 44445555555553321 11122223567777889999999997 32 22223345555677777777531
Q ss_pred cccceeeeeccceEEeecCCCCc---c---c-----CceeeeeccCCCCCCCCCChhhH-HHHHHHHHHhccCCCcCChh
Q 013415 313 EYYKMEMIADVQMLILSEGKSNI---V---P-----ADLVIPFQPSSAASFEVVPAETL-EAWRWYLASVRSLPHSIESD 380 (443)
Q Consensus 313 ~y~~~e~~~di~vliLS~gKS~~---l---p-----~D~~vpl~~~~~~~~~~~~~~~L-~~~R~Yl~~~r~~~~~i~ee 380 (443)
-++ ++|++.-...+ + | ++..|.+ .+.+.+++ .-++.|+.. ..+.++++
T Consensus 160 --------~~~-~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F--------~~~t~~el~~I~~~~l~~---~~~~l~~~ 219 (287)
T CHL00181 160 --------DDL-VVIFAGYKDRMDKFYESNPGLSSRIANHVDF--------PDYTPEELLQIAKIMLEE---QQYQLTPE 219 (287)
T ss_pred --------CCE-EEEEeCCcHHHHHHHhcCHHHHHhCCceEEc--------CCcCHHHHHHHHHHHHHH---hcCCCChh
Confidence 123 34444322111 1 1 2222222 33344444 566666654 35778888
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH----HHcCCCCCCHHHHH
Q 013415 381 MQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMS----ASFGETSLSLEHWQ 429 (443)
Q Consensus 381 ~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllA----lS~G~~~lt~e~W~ 429 (443)
..+.+-+.+.+.+..+..-+.+.+..++.-+...- ...|...+++++..
T Consensus 220 ~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~~~~~~~~~~l~ 272 (287)
T CHL00181 220 AEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFESGGRVLTKADLV 272 (287)
T ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHh
Confidence 87777777665554443345788887775333221 11255667777643
No 25
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.87 E-value=0.52 Score=51.46 Aligned_cols=147 Identities=18% Similarity=0.260 Sum_probs=92.8
Q ss_pred ccccceEeeCCcEEEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccc---------------eeeeeccceE
Q 013415 263 LIPGVLQLADGSHLIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYK---------------MEMIADVQML 326 (443)
Q Consensus 263 L~sG~LQLa~gT~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~---------------~e~~~di~vl 326 (443)
...|.+..++||.|+|||.. |... -...|-.+|+..++..+=.||. ..+++|+.++
T Consensus 166 ~~~G~l~~a~gG~L~IdEI~~L~~~--------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI 237 (531)
T TIGR02902 166 PKPGAVTRAHGGVLFIDEIGELHPV--------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLI 237 (531)
T ss_pred ccCchhhccCCcEEEEechhhCCHH--------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEE
Confidence 45788889999999999997 5443 2567788888887765533432 2356777765
Q ss_pred EeecCCCCcccCceeeeeccCCCC-CCCCCChhhH-HHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHH
Q 013415 327 ILSEGKSNIVPADLVIPFQPSSAA-SFEVVPAETL-EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDL 404 (443)
Q Consensus 327 iLS~gKS~~lp~D~~vpl~~~~~~-~~~~~~~~~L-~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L 404 (443)
..+.. + |..+.=+++.-... .+.+.+++++ ..++.++ +..++.+++++.+.|.... + +.+++
T Consensus 238 ~ATt~-~---p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a---~k~~i~is~~al~~I~~y~---~------n~Rel 301 (531)
T TIGR02902 238 GATTR-N---PEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAA---EKIGINLEKHALELIVKYA---S------NGREA 301 (531)
T ss_pred EEecC-C---cccCChHHhhhhheeeCCCCCHHHHHHHHHHHH---HHcCCCcCHHHHHHHHHhh---h------hHHHH
Confidence 55442 1 11111111110000 0233344443 3444433 3456889999888775432 1 35888
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 405 SRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 405 ~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
..++..|..+|...++..++.+|.+.++.
T Consensus 302 ~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 302 VNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 88999988889989999999999998864
No 26
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.67 E-value=0.25 Score=48.50 Aligned_cols=190 Identities=17% Similarity=0.125 Sum_probs=99.8
Q ss_pred eeeeEeecCCCcchhhhHHHHHHHHHh------hcCceEEEeeehhhhhcCCCcccccCCCCcccccceEeeCCcEEEEe
Q 013415 206 KLSLNLTCLSKESVSVFGNQVRLSVQN------LLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIID 279 (443)
Q Consensus 206 ~~sLnl~~~p~~~~~~~~~~L~~~l~~------L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa~gT~lviD 279 (443)
..++-|.|.|| +-+..+.+.+.. +++...++-+....|.... -.++.....+.+.-+.|+.|+||
T Consensus 42 ~~~vll~GppG----tGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~-----~g~~~~~~~~~~~~a~~~VL~ID 112 (261)
T TIGR02881 42 VLHMIFKGNPG----TGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEY-----IGHTAQKTREVIKKALGGVLFID 112 (261)
T ss_pred cceEEEEcCCC----CCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhh-----ccchHHHHHHHHHhccCCEEEEe
Confidence 36888999998 334444444433 3355566655555544321 11223333466777789999999
Q ss_pred cCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec-CCCC--cc---c-----CceeeeeccC
Q 013415 280 ETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE-GKSN--IV---P-----ADLVIPFQPS 347 (443)
Q Consensus 280 Et~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~-gKS~--~l---p-----~D~~vpl~~~ 347 (443)
|.. |..|+-...|.+-+.+|-..|+... .++ ++|+.. .+.+ ++ | ++..+.+
T Consensus 113 E~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-------------~~~-~vila~~~~~~~~~~~~~p~L~sRf~~~i~f--- 175 (261)
T TIGR02881 113 EAYSLARGGEKDFGKEAIDTLVKGMEDNR-------------NEF-VLILAGYSDEMDYFLSLNPGLRSRFPISIDF--- 175 (261)
T ss_pred chhhhccCCccchHHHHHHHHHHHHhccC-------------CCE-EEEecCCcchhHHHHhcChHHHhccceEEEE---
Confidence 998 6554322233333444555554431 111 222221 1110 00 0 2222222
Q ss_pred CCCCCCCCChhhH-HHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHHH--HHHcCCCC
Q 013415 348 SAASFEVVPAETL-EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQ--ADRSLGGQDLSRLLTMGRLM--SASFGETS 422 (443)
Q Consensus 348 ~~~~~~~~~~~~L-~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq--~~~~it~~~L~~~L~LaRll--AlS~G~~~ 422 (443)
.+.+++++ +-++.++. ..++.+++++.++|.+.+-..++ .+..-+++.+..++-.|... .+..++..
T Consensus 176 -----~~~~~~el~~Il~~~~~---~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~~~ 247 (261)
T TIGR02881 176 -----PDYTVEELMEIAERMVK---EREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDKSD 247 (261)
T ss_pred -----CCCCHHHHHHHHHHHHH---HcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 22344444 45555543 35678999999999888776654 33334566666666654433 33345566
Q ss_pred CCHHHHH
Q 013415 423 LSLEHWQ 429 (443)
Q Consensus 423 lt~e~W~ 429 (443)
.+.++..
T Consensus 248 ~~~~~~~ 254 (261)
T TIGR02881 248 YSKEDLM 254 (261)
T ss_pred CCHHHHh
Confidence 6666543
No 27
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=95.55 E-value=0.68 Score=48.99 Aligned_cols=237 Identities=16% Similarity=0.158 Sum_probs=141.5
Q ss_pred HHHhhhcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeee--------
Q 013415 172 HLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLT-------- 243 (443)
Q Consensus 172 ~La~~l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lplt-------- 243 (443)
|+..++-|.......|+|.-+- -+- | .+.|.|..+ +.++.+...|..|+|--..+-..
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~---P~i-----g--gvLI~G~kG----taKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD---PQI-----G--GALIAGEKG----TAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc---ccc-----c--eeEEecCCC----ccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 4445677888889988886322 122 1 244557776 78999999999999875533211
Q ss_pred --------hhh---------------hhcC-----------CCcccc--cCCCCcccccceEeeCCcEEEEecCCCCcCc
Q 013415 244 --------VNY---------------LNTA-----------SLAPKK--DYQTNRLIPGVLQLADGSHLIIDETQLETGT 287 (443)
Q Consensus 244 --------l~~---------------LN~~-----------~l~P~k--D~~~~~L~sG~LQLa~gT~lviDEt~L~~G~ 287 (443)
.+. .-+. .+-|.| .+..-.++.|+|==||+|.|-|||-.+=.-+
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~ 159 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDH 159 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHH
Confidence 000 0000 111111 1122368999999999999999999744332
Q ss_pred ccccchhHHHHHHHHHHh--CeeeeeecccceeeeeccceEEeecCCCCccc------------CceeeeeccCCCCC--
Q 013415 288 LNSTGVENARLLKNLMEF--QKVEYNFEYYKMEMIADVQMLILSEGKSNIVP------------ADLVIPFQPSSAAS-- 351 (443)
Q Consensus 288 L~~~Gv~N~~aL~~li~~--Q~v~YdF~y~~~e~~~di~vliLS~gKS~~lp------------~D~~vpl~~~~~~~-- 351 (443)
=+.+|.+++.. |.|.-+ . +.+.. ...++++-. +-| |.+.|-+.+..+.+
T Consensus 160 -------lvd~LLd~aaeG~n~vere-G-isi~h--pa~fvligT----mNPEeGeLrpqLlDRfg~~v~~~~~~~~~~r 224 (423)
T COG1239 160 -------LVDALLDVAAEGVNDVERE-G-ISIRH--PARFLLIGT----MNPEEGELRPQLLDRFGLEVDTHYPLDLEER 224 (423)
T ss_pred -------HHHHHHHHHHhCCceeeeC-c-eeecc--CccEEEEee----cCccccccchhhHhhhcceeeccCCCCHHHH
Confidence 26788888888 677765 2 23333 444555544 333 34444333332221
Q ss_pred C--------CCCCh--------hhHHHHHHHHHHhccC--CCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 013415 352 F--------EVVPA--------ETLEAWRWYLASVRSL--PHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRL 413 (443)
Q Consensus 352 ~--------~~~~~--------~~L~~~R~Yl~~~r~~--~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRl 413 (443)
+ ....| .....+|.=+..+|+. .+.+++++..+|-+-= ++.. --+-+---.+.+.||.
T Consensus 225 v~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~---~~~~-v~g~radi~~~r~a~a 300 (423)
T COG1239 225 VEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELC---ARLA-VDGHRADIVVVRAAKA 300 (423)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHH---HHhc-cCCCchhhHHHHHHHH
Confidence 0 01122 1234566556666653 5778888777663321 2211 1112333468899999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHhh
Q 013415 414 MSASFGETSLSLEHWQMVKELERLRRER 441 (443)
Q Consensus 414 lAlS~G~~~lt~e~W~~a~~LE~~R~~R 441 (443)
+|.-+|+++++.|+...|..|.-..+.|
T Consensus 301 ~aa~~Gr~~v~~~Di~~a~~l~l~hR~~ 328 (423)
T COG1239 301 LAALRGRTEVEEEDIREAAELALLHRRR 328 (423)
T ss_pred HHHhcCceeeehhhHHHHHhhhhhhhhc
Confidence 9999999999999999999998665544
No 28
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.29 Score=54.61 Aligned_cols=162 Identities=25% Similarity=0.299 Sum_probs=102.1
Q ss_pred cccccceEeeCCcEEEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCCcccCce
Q 013415 262 RLIPGVLQLADGSHLIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADL 340 (443)
Q Consensus 262 ~L~sG~LQLa~gT~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~~lp~D~ 340 (443)
++++|++.=|+||+|+|||.. |.+. = =-..|+.+...|.+.+.-.-.+- +..+-.+ =.|+|+
T Consensus 215 ~i~pGaVHkAngGVLiIdei~lL~~~-----~--~w~~LKa~~~k~~~~~~~~~~s~------~~~v~~e----~vP~d~ 277 (647)
T COG1067 215 RVKPGAVHKANGGVLIIDEIGLLAQP-----L--QWKLLKALLDKEQPIWGSSEPSS------GAPVRPE----SVPLDL 277 (647)
T ss_pred cccCcccccccCcEEEEEhhhhhCcH-----H--HHHHHHHHHhccccccCcCcccc------CcccCCC----Ccccce
Confidence 899999999999999999997 3322 1 13556777777766554221111 2222222 356666
Q ss_pred eeeeccCC---------CCC----------CC---C-CChhhHHHHHHHHHHhccC--CCcCChhHHHHHHHHHHHHhhc
Q 013415 341 VIPFQPSS---------AAS----------FE---V-VPAETLEAWRWYLASVRSL--PHSIESDMQKVVESDLVAARQA 395 (443)
Q Consensus 341 ~vpl~~~~---------~~~----------~~---~-~~~~~L~~~R~Yl~~~r~~--~~~i~ee~~~~Iq~dFV~~Rq~ 395 (443)
.+.+--.. +++ ++ + ..++....|+-|...+..- -+.++.++.+.|-.. ..|.+
T Consensus 278 klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~--a~R~A 355 (647)
T COG1067 278 KLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIRE--AARRA 355 (647)
T ss_pred EEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH--HHHhc
Confidence 66553221 001 01 1 1223445677676666443 356666665555332 24554
Q ss_pred CC----CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhhc
Q 013415 396 DR----SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERL 442 (443)
Q Consensus 396 ~~----~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~LE~~R~~Rl 442 (443)
+. ++..++|-.+++.|..+|.+.|..-++.+|.+.|++.-..|..++
T Consensus 356 g~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~~e~~l 406 (647)
T COG1067 356 GDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQKRELREGQL 406 (647)
T ss_pred cccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHhhhhHHHHH
Confidence 43 578999999999999999999999999999999999855554443
No 29
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=94.76 E-value=0.064 Score=58.25 Aligned_cols=164 Identities=16% Similarity=0.190 Sum_probs=96.1
Q ss_pred cccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeecc----------cceeeeeccceEEeecC
Q 013415 262 RLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEY----------YKMEMIADVQMLILSEG 331 (443)
Q Consensus 262 ~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y----------~~~e~~~di~vliLS~g 331 (443)
.+.+|.|.=||||+||||-..|=. .-+ --..|+.++..+++.+.-+. .+-++|+|+-|+++-..
T Consensus 322 ~I~~GaLhkANGGyLIL~a~~LL~----~p~--~W~~LKr~L~~~~i~ie~~~~~~~~~~~~l~PepIpl~vKVILiG~~ 395 (509)
T PF13654_consen 322 LIKPGALHKANGGYLILDAEDLLA----NPY--AWERLKRALRTGEIEIESPEEYGLSSTVSLEPEPIPLDVKVILIGDR 395 (509)
T ss_dssp GEE--HHHHTTTSEEEETTGGGS-----HHH---HHHHHHHHHHSEE--B-S---TTSGGGG-B-S-EE---EEEEEE-T
T ss_pred eEcCceEEecCCeEEEEEHHHhhh----ChH--HHHHHHHHHHcCceeeccccccccCCCCCCCCCCcceEEEEEEEcCH
Confidence 689999999999999999887321 112 27899999999999988652 23357788888777764
Q ss_pred CCC--cccCc--e--eeeeccCCCCCCCCCChhhHHHHHHHHHHh-ccC-CCcCChhHHHHHHHHHHHHhhcCC--CCCH
Q 013415 332 KSN--IVPAD--L--VIPFQPSSAASFEVVPAETLEAWRWYLASV-RSL-PHSIESDMQKVVESDLVAARQADR--SLGG 401 (443)
Q Consensus 332 KS~--~lp~D--~--~vpl~~~~~~~~~~~~~~~L~~~R~Yl~~~-r~~-~~~i~ee~~~~Iq~dFV~~Rq~~~--~it~ 401 (443)
-.- +...| + .+++..+-+..+. .+++.+..|=.||+.. +.. -..++.++...+-+.-++ .+.. ++.-
T Consensus 396 ~~y~~L~~~D~dF~~lFkv~aef~~~~~-~~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li~~~~R--~~q~kLsl~~ 472 (509)
T PF13654_consen 396 ELYYLLYEYDPDFYKLFKVKAEFDSEMP-RTEENIRQYARFIASICQKEGLPPFDRSAVARLIEYSAR--LDQDKLSLRF 472 (509)
T ss_dssp THHHHS-HHHHHHHHHHSEEEE--SEEE---HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHHHHHHH--CC-SEEE--H
T ss_pred HHHHHHHHhCHHHHhCCCEEEEccccCC-CCHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH--HhCCEeCCCH
Confidence 431 11111 1 1233333322222 2455566666666653 332 346777777776665544 3322 4667
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 402 QDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 402 ~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
..+..+|+-|-.+|...|...++.++.++|++-
T Consensus 473 ~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 473 SWLADLLREANYWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp HHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHc
Confidence 899999999999999999999999999999863
No 30
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.86 E-value=0.37 Score=46.51 Aligned_cols=130 Identities=15% Similarity=0.044 Sum_probs=84.1
Q ss_pred hcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEee-------ehhhhhc
Q 013415 177 LGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPL-------TVNYLNT 249 (443)
Q Consensus 177 l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpl-------tl~~LN~ 249 (443)
+-|.+.|+..|++...++ =+|.|.|.|+ +-++.+.+.+..|+|....-.. ++.++..
T Consensus 5 I~GQe~aKrAL~iAAaG~------------h~lLl~GppG----tGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~ 68 (206)
T PF01078_consen 5 IVGQEEAKRALEIAAAGG------------HHLLLIGPPG----TGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGP 68 (206)
T ss_dssp SSSTHHHHHHHHHHHHCC--------------EEEES-CC----CTHHHHHHHHHHCS--CCEECCESS--S-TT---S-
T ss_pred hcCcHHHHHHHHHHHcCC------------CCeEEECCCC----CCHHHHHHHHHHhCCCCchHHHhhhccccccccCCC
Confidence 457888899998887763 2789999998 6789999999999998654432 1222111
Q ss_pred C----CCcccccC---C-------CC-cccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeecc
Q 013415 250 A----SLAPKKDY---Q-------TN-RLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEY 314 (443)
Q Consensus 250 ~----~l~P~kD~---~-------~~-~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y 314 (443)
. .-.|.+.. . .+ ....|.+=||++|+|.+||...- +.+ =+++|...++..+|...=..
T Consensus 69 ~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef-----~~~--vld~Lr~ple~g~v~i~R~~ 141 (206)
T PF01078_consen 69 DEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEF-----DRS--VLDALRQPLEDGEVTISRAG 141 (206)
T ss_dssp --EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS------HH--HHHHHHHHHHHSBEEEEETT
T ss_pred CCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc-----CHH--HHHHHHHHHHCCeEEEEECC
Confidence 0 01121110 0 01 57889999999999999999733 223 49999999999999988777
Q ss_pred cceeeeeccceEEee
Q 013415 315 YKMEMIADVQMLILS 329 (443)
Q Consensus 315 ~~~e~~~di~vliLS 329 (443)
.++.||++.-++.-.
T Consensus 142 ~~~~~Pa~f~lv~a~ 156 (206)
T PF01078_consen 142 GSVTYPARFLLVAAM 156 (206)
T ss_dssp EEEEEB--EEEEEEE
T ss_pred ceEEEecccEEEEEe
Confidence 888899887655443
No 31
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.67 E-value=13 Score=37.81 Aligned_cols=242 Identities=17% Similarity=0.106 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhc-CceEEEe
Q 013415 163 KETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLL-PFTQCIP 241 (443)
Q Consensus 163 ~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~-P~s~~lp 241 (443)
......+...+...+.|+.-++..++..++++ -++-|.|.|| +.+..|.+.++..+ .....+.
T Consensus 12 ~~~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~------------~~vll~G~PG----~gKT~la~~lA~~l~~~~~~i~ 75 (329)
T COG0714 12 AEILGKIRSELEKVVVGDEEVIELALLALLAG------------GHVLLEGPPG----VGKTLLARALARALGLPFVRIQ 75 (329)
T ss_pred hhHHHHHHhhcCCeeeccHHHHHHHHHHHHcC------------CCEEEECCCC----ccHHHHHHHHHHHhCCCeEEEe
Confidence 34456667777777888999999999988886 3578899998 55666665554443 3555566
Q ss_pred eehhhhhcC-----CCccccc-CCCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeeccc
Q 013415 242 LTVNYLNTA-----SLAPKKD-YQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYY 315 (443)
Q Consensus 242 ltl~~LN~~-----~l~P~kD-~~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~ 315 (443)
+|-+.+-+. .+.+.+. ....++..|.|=-+-++.+.+||.. ...-+...+|..+|+...+.+. ...
T Consensus 76 ~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn-------ra~p~~q~aLl~~l~e~~vtv~-~~~ 147 (329)
T COG0714 76 CTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN-------RAPPEVQNALLEALEERQVTVP-GLT 147 (329)
T ss_pred cCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc-------cCCHHHHHHHHHHHhCcEEEEC-CcC
Confidence 664433221 1222221 3334788888887777899999994 5566788999999999887766 222
Q ss_pred ceeeeeccceEEeec-------CCCCccc------Cceeeeec-cCCCCC-------CCC-C---ChhhHHH---HHHHH
Q 013415 316 KMEMIADVQMLILSE-------GKSNIVP------ADLVIPFQ-PSSAAS-------FEV-V---PAETLEA---WRWYL 367 (443)
Q Consensus 316 ~~e~~~di~vliLS~-------gKS~~lp------~D~~vpl~-~~~~~~-------~~~-~---~~~~L~~---~R~Yl 367 (443)
+ +...-+++|+-. |-+ =+| |.+.+-+. |..... ... . ....... .-.++
T Consensus 148 ~--~~~~~~f~viaT~Np~e~~g~~-~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~ 224 (329)
T COG0714 148 T--IRLPPPFIVIATQNPGEYEGTY-PLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELL 224 (329)
T ss_pred C--cCCCCCCEEEEccCccccCCCc-CCCHHHHhhEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHH
Confidence 2 444444444443 322 111 11222121 111100 000 0 0001111 11111
Q ss_pred HHhcc-CCCcCChhHHHHHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 013415 368 ASVRS-LPHSIESDMQKVVESDLVAARQADR---SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMV 431 (443)
Q Consensus 368 ~~~r~-~~~~i~ee~~~~Iq~dFV~~Rq~~~---~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a 431 (443)
..... .+..+++++..++-.-+-..|.... .++.+....++..+|++|...|+.....++....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~ 292 (329)
T COG0714 225 RLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKAL 292 (329)
T ss_pred HHHhhhccCCchHHHHHHHHHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHH
Confidence 11111 2577888888888766666665432 3578899999999999999999999998886554
No 32
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.99 E-value=7.9 Score=38.76 Aligned_cols=181 Identities=17% Similarity=0.162 Sum_probs=92.8
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhh--cCceEEEeeehhhhhcCCCcccccCCCCcccccceEeeCCcEEEEecCC
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNL--LPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQ 282 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L--~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa~gT~lviDEt~ 282 (443)
+.+++.|.|.||.-....+..+...+..+ .+...++.++.+.|-.. +.- .+..-..+.++-+.|+.|+|||..
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~-~~g----~~~~~~~~~~~~a~~gvL~iDEi~ 131 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQ-YIG----HTAPKTKEILKRAMGGVLFIDEAY 131 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHh-hcc----cchHHHHHHHHHccCcEEEEechh
Confidence 45689999999832222333333454432 22234444554444321 111 111223456777889999999997
Q ss_pred -CC-cCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCC-C--ccc--------CceeeeeccCCC
Q 013415 283 -LE-TGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS-N--IVP--------ADLVIPFQPSSA 349 (443)
Q Consensus 283 -L~-~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS-~--~lp--------~D~~vpl~~~~~ 349 (443)
|. .++-...|.+-...|-.+|+... .++. +|++.... + ++. ++..+.+
T Consensus 132 ~L~~~~~~~~~~~~~~~~Ll~~le~~~-------------~~~~-vI~a~~~~~~~~~~~~np~L~sR~~~~i~f----- 192 (284)
T TIGR02880 132 YLYRPDNERDYGQEAIEILLQVMENQR-------------DDLV-VILAGYKDRMDSFFESNPGFSSRVAHHVDF----- 192 (284)
T ss_pred hhccCCCccchHHHHHHHHHHHHhcCC-------------CCEE-EEEeCCcHHHHHHHhhCHHHHhhCCcEEEe-----
Confidence 42 11112234444566677776431 2332 33332211 0 111 1122222
Q ss_pred CCCCCCChhhH-HHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 013415 350 ASFEVVPAETL-EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMS 415 (443)
Q Consensus 350 ~~~~~~~~~~L-~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllA 415 (443)
.+++++++ ..++.|+.. ..+.+++++.+.+.+.+...|..+..=+.+.+..++.-+.+.-
T Consensus 193 ---p~l~~edl~~I~~~~l~~---~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~ 253 (284)
T TIGR02880 193 ---PDYSEAELLVIAGLMLKE---QQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQ 253 (284)
T ss_pred ---CCcCHHHHHHHHHHHHHH---hccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHH
Confidence 22344444 566666655 3567888888887775544444444556788887776665443
No 33
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.83 E-value=3.1 Score=41.07 Aligned_cols=148 Identities=14% Similarity=0.086 Sum_probs=85.1
Q ss_pred ccccceEe--eCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeee-ecc--cceeeeeccceEEeecCCCCccc
Q 013415 263 LIPGVLQL--ADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYN-FEY--YKMEMIADVQMLILSEGKSNIVP 337 (443)
Q Consensus 263 L~sG~LQL--a~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~Yd-F~y--~~~e~~~di~vliLS~gKS~~lp 337 (443)
...|.|.. ..|+.|+|||...-. -.-..+|.++++.+.+.-. -.. ..+..+-+..+++.|...-
T Consensus 94 ~~~g~l~~A~~~g~~lllDEi~r~~-------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~---- 162 (262)
T TIGR02640 94 WVDNRLTLAVREGFTLVYDEFTRSK-------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVE---- 162 (262)
T ss_pred ecCchHHHHHHcCCEEEEcchhhCC-------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcc----
Confidence 44677764 578999999997321 1236778899988765432 000 1123444666666655210
Q ss_pred CceeeeeccC-CCC----CCCCCC-hhhHHHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCC--CCCHHHHHHHHH
Q 013415 338 ADLVIPFQPS-SAA----SFEVVP-AETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADR--SLGGQDLSRLLT 409 (443)
Q Consensus 338 ~D~~vpl~~~-~~~----~~~~~~-~~~L~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~--~it~~~L~~~L~ 409 (443)
..-.-.+.+. ... .+..++ +.+..-++.. +.++++..+.|-+-|-+.|..+. ..+ .-..+.
T Consensus 163 ~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~--------~~~~~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~ 231 (262)
T TIGR02640 163 YAGVHETQDALLDRLITIFMDYPDIDTETAILRAK--------TDVAEDSAATIVRLVREFRASGDEITSG---LRASLM 231 (262)
T ss_pred ccceecccHHHHhhcEEEECCCCCHHHHHHHHHHh--------hCCCHHHHHHHHHHHHHHHhhCCccCCc---HHHHHH
Confidence 0000001000 000 011112 2333444432 24788999999999989994332 334 555677
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHH
Q 013415 410 MGRLMSASFGETSLSLEHWQMVK 432 (443)
Q Consensus 410 LaRllAlS~G~~~lt~e~W~~a~ 432 (443)
++|+++...+...++.+++..++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~ 254 (262)
T TIGR02640 232 IAEVATQQDIPVDVDDEDFVDLC 254 (262)
T ss_pred HHHHHHHcCCCCCCCcHHHHHHH
Confidence 78888888889999999998875
No 34
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=0.94 Score=48.71 Aligned_cols=229 Identities=16% Similarity=0.126 Sum_probs=130.8
Q ss_pred cCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEe---e----ehhh--hh
Q 013415 178 GNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIP---L----TVNY--LN 248 (443)
Q Consensus 178 ~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lp---l----tl~~--LN 248 (443)
-|-+-|+..|-...- |-=+|-+.|.|+ +-++.|.+-|..|+|-...-. . ++++ .+
T Consensus 182 ~GQ~~AKrAleiAAA------------GgHnLl~~GpPG----tGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~ 245 (490)
T COG0606 182 KGQEQAKRALEIAAA------------GGHNLLLVGPPG----TGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHE 245 (490)
T ss_pred cCcHHHHHHHHHHHh------------cCCcEEEecCCC----CchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccc
Confidence 478888888766544 445689999998 567788888888888632111 0 1111 11
Q ss_pred cC---CCccccc-----------CCCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeecc
Q 013415 249 TA---SLAPKKD-----------YQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEY 314 (443)
Q Consensus 249 ~~---~l~P~kD-----------~~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y 314 (443)
.. .-.|.+- ...+.-++|..-||+||+|.|||.. +....-+.+|..=+++.++..-=.-
T Consensus 246 ~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElp-------ef~~~iLe~LR~PLE~g~i~IsRa~ 318 (490)
T COG0606 246 GCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELP-------EFKRSILEALREPLENGKIIISRAG 318 (490)
T ss_pred cCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccc-------hhhHHHHHHHhCccccCcEEEEEcC
Confidence 10 1111111 1124678999999999999999984 3333457777777888888876677
Q ss_pred cceeeeeccceEEeecCCCCcccCceee--------eeccCCC---------C-----C--C--CC----------CChh
Q 013415 315 YKMEMIADVQMLILSEGKSNIVPADLVI--------PFQPSSA---------A-----S--F--EV----------VPAE 358 (443)
Q Consensus 315 ~~~e~~~di~vliLS~gKS~~lp~D~~v--------pl~~~~~---------~-----~--~--~~----------~~~~ 358 (443)
+++.||++...+ .+. -||-|.. ++.+... + + + .. ..++
T Consensus 319 ~~v~ypa~Fqlv-~Am-----NpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~e 392 (490)
T COG0606 319 SKVTYPARFQLV-AAM-----NPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGE 392 (490)
T ss_pred CeeEEeeeeEEh-hhc-----CCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCC
Confidence 788888886543 222 2222211 1111100 0 0 0 00 0111
Q ss_pred hHHHHHHHHHHhc------cCCCcCChhH-HHHHHHHHHHHhhc---------CCCCCHHHHHHHHHHHHHHHHHcCCCC
Q 013415 359 TLEAWRWYLASVR------SLPHSIESDM-QKVVESDLVAARQA---------DRSLGGQDLSRLLTMGRLMSASFGETS 422 (443)
Q Consensus 359 ~L~~~R~Yl~~~r------~~~~~i~ee~-~~~Iq~dFV~~Rq~---------~~~it~~~L~~~L~LaRllAlS~G~~~ 422 (443)
.=..+|.=++.|| .....+.-++ .+.|+..+.=.|.. .-.++.+..|+.|++||-+|=..|++.
T Consensus 393 ss~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiADL~g~~~ 472 (490)
T COG0606 393 SSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIADLEGSEQ 472 (490)
T ss_pred CcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhhcccCcch
Confidence 1133444444443 2221012222 12233311111111 114789999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 013415 423 LSLEHWQMVKELE 435 (443)
Q Consensus 423 lt~e~W~~a~~LE 435 (443)
+.+.+-.+|++.-
T Consensus 473 i~~~hl~eAi~yR 485 (490)
T COG0606 473 IERSHLAEAISYR 485 (490)
T ss_pred hhHHHHHHHHhhh
Confidence 9999999988753
No 35
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=90.69 E-value=3.2 Score=47.66 Aligned_cols=215 Identities=13% Similarity=0.165 Sum_probs=116.3
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhc
Q 013415 170 LRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNT 249 (443)
Q Consensus 170 l~~La~~l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~ 249 (443)
-..|..-.+|..-+++.++-+|-... +.+ ..-|. .+.|.|+|+ +-++.+.+.+...+.+. ++.+++.+..+
T Consensus 317 ~~~l~~~~~g~~~vK~~i~~~l~~~~--~~~-~~~g~-~i~l~GppG----~GKTtl~~~ia~~l~~~-~~~i~~~~~~d 387 (784)
T PRK10787 317 QEILDTDHYGLERVKDRILEYLAVQS--RVN-KIKGP-ILCLVGPPG----VGKTSLGQSIAKATGRK-YVRMALGGVRD 387 (784)
T ss_pred HHHhhhhccCHHHHHHHHHHHHHHHH--hcc-cCCCc-eEEEECCCC----CCHHHHHHHHHHHhCCC-EEEEEcCCCCC
Confidence 34455557888999998885444321 111 12344 488999998 56778888888766654 33344443322
Q ss_pred CC-Cccc-ccCC---CCcccccceEe-eCCcEEEEecCC-CCcCcccccchhHHHHHHHHHH-hCeeeeeecccceeeee
Q 013415 250 AS-LAPK-KDYQ---TNRLIPGVLQL-ADGSHLIIDETQ-LETGTLNSTGVENARLLKNLME-FQKVEYNFEYYKMEMIA 321 (443)
Q Consensus 250 ~~-l~P~-kD~~---~~~L~sG~LQL-a~gT~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~-~Q~v~YdF~y~~~e~~~ 321 (443)
.. +.-. +.|. .|++..+.-.. ..+..++|||.. +... ..| .=..||.+++. .|...|.-+|..++++.
T Consensus 388 ~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~---~~g-~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 388 EAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSD---MRG-DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred HHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccc---cCC-CHHHHHHHHhccccEEEEecccccccccC
Confidence 11 1111 1121 12222111111 246689999997 4322 111 11578999887 58888988898877776
Q ss_pred ccceEEeecCCCCcccCceeeeeccCCCC-CCCCCChh-hHHHHHHHHH--Hhcc-----CCCcCChhHHHHHHHHHHHH
Q 013415 322 DVQMLILSEGKSNIVPADLVIPFQPSSAA-SFEVVPAE-TLEAWRWYLA--SVRS-----LPHSIESDMQKVVESDLVAA 392 (443)
Q Consensus 322 di~vliLS~gKS~~lp~D~~vpl~~~~~~-~~~~~~~~-~L~~~R~Yl~--~~r~-----~~~~i~ee~~~~Iq~dFV~~ 392 (443)
.--++|. +..| ..+.=||..-..- .+...+++ .++-.+.||. ..+. ....+++++.+.|-+.|
T Consensus 464 s~v~~i~-TaN~----~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~y--- 535 (784)
T PRK10787 464 SDVMFVA-TSNS----MNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYY--- 535 (784)
T ss_pred CceEEEE-cCCC----CCCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhC---
Confidence 5545554 3344 1111122211110 12334444 4577888884 2221 24678999988886544
Q ss_pred hhcCCCCCHHHHHHHH
Q 013415 393 RQADRSLGGQDLSRLL 408 (443)
Q Consensus 393 Rq~~~~it~~~L~~~L 408 (443)
++...++.|.|.+
T Consensus 536 ---t~e~GaR~LeR~I 548 (784)
T PRK10787 536 ---TREAGVRSLEREI 548 (784)
T ss_pred ---CcccCCcHHHHHH
Confidence 2234456666555
No 36
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=89.65 E-value=6 Score=44.14 Aligned_cols=155 Identities=15% Similarity=0.239 Sum_probs=78.1
Q ss_pred ccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeeccccee-----------eee--ccceEEe-
Q 013415 263 LIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKME-----------MIA--DVQMLIL- 328 (443)
Q Consensus 263 L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e-----------~~~--di~vliL- 328 (443)
...|.+.-+.||.|+|||+. .|+ ......|..+|+.+++.+.-.||.-+ +.. ...++++
T Consensus 256 ~~~g~v~~asgGvL~LDEi~----~Ld---~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~ 328 (615)
T TIGR02903 256 PKTGLVTDAHGGVLFIDEIG----ELD---PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIG 328 (615)
T ss_pred hhcCchhhcCCCeEEEeccc----cCC---HHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEE
Confidence 45677778889999999974 233 33478899999999877654443221 111 1122222
Q ss_pred ecCCCCcccCceeeeeccCCCC-CCCCCChhhH-HHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 013415 329 SEGKSNIVPADLVIPFQPSSAA-SFEVVPAETL-EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSR 406 (443)
Q Consensus 329 S~gKS~~lp~D~~vpl~~~~~~-~~~~~~~~~L-~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~ 406 (443)
+.... |..+.=+++.-... .+.+.+.+++ ..+|.++.. .+..+++++.+.|.+..-..|++- +.|..
T Consensus 329 aTt~~---~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~---~~v~ls~eal~~L~~ys~~gRral-----n~L~~ 397 (615)
T TIGR02903 329 ATTRD---PEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEK---INVHLAAGVEELIARYTIEGRKAV-----NILAD 397 (615)
T ss_pred ecccc---ccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH---cCCCCCHHHHHHHHHCCCcHHHHH-----HHHHH
Confidence 22211 01110011110000 0123344443 556655442 356788999988866433334321 23333
Q ss_pred HHHHHHHHHH----HcCCCCCCHHHHHHHHHHH
Q 013415 407 LLTMGRLMSA----SFGETSLSLEHWQMVKELE 435 (443)
Q Consensus 407 ~L~LaRllAl----S~G~~~lt~e~W~~a~~LE 435 (443)
...+++.-+. ..+...++.++.+.++...
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 398 VYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 3333222111 1233478899988887654
No 37
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=89.39 E-value=14 Score=40.56 Aligned_cols=187 Identities=14% Similarity=0.091 Sum_probs=106.1
Q ss_pred eeeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhhc-----CCCcccccCCCC---cccccceEeeCC
Q 013415 204 VGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNT-----ASLAPKKDYQTN---RLIPGVLQLADG 273 (443)
Q Consensus 204 lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN~-----~~l~P~kD~~~~---~L~sG~LQLa~g 273 (443)
-.+.++.|.|-+| +-++.+.+.|....++. -++.+.-..++. .-|--.+..-|+ .-.+|.+..++|
T Consensus 233 ~~~~pVLI~GE~G----TGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g 308 (526)
T TIGR02329 233 RSDATVLILGESG----TGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHR 308 (526)
T ss_pred CCCCcEEEECCCC----cCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcCC
Confidence 3567899999998 67888888888877664 344443332221 112111222222 136899999999
Q ss_pred cEEEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCC-c-----ccCce------
Q 013415 274 SHLIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN-I-----VPADL------ 340 (443)
Q Consensus 274 T~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~-~-----lp~D~------ 340 (443)
|.|+|||.. |... -...|-.+++.+.+.-- -..-..++|++++..|...-. + +-.|+
T Consensus 309 GTLfLdeI~~Lp~~--------~Q~~Ll~~L~~~~~~r~--g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~ 378 (526)
T TIGR02329 309 GTLFLDEIGEMPLP--------LQTRLLRVLEEREVVRV--GGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSI 378 (526)
T ss_pred ceEEecChHhCCHH--------HHHHHHHHHhcCcEEec--CCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCC
Confidence 999999996 4432 35567778877765321 123357889999888752110 0 11111
Q ss_pred -eeeeccCCCCCCCCCChhhHHHHHHHHHHhc-cCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 013415 341 -VIPFQPSSAASFEVVPAETLEAWRWYLASVR-SLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLT 409 (443)
Q Consensus 341 -~vpl~~~~~~~~~~~~~~~L~~~R~Yl~~~r-~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~ 409 (443)
.|.+.|=.+. .++-...++.||.... .....+++++.+..++-+-.+++-+.+=+-++|...+.
T Consensus 379 ~~I~lPPLReR-----~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvie 444 (526)
T TIGR02329 379 LRIALPPLRER-----PGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVE 444 (526)
T ss_pred cEEeCCCchhc-----hhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHH
Confidence 1111111110 1223456788887653 23445777777665544434455555556667766655
No 38
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=87.92 E-value=2.3 Score=35.99 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=44.2
Q ss_pred cCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 376 SIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 376 ~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
.++++..+.+++-+- ...+|.+-+|++|++||-+|=..|++.++.+|...|+.+
T Consensus 42 ~l~~~~~~~l~~~~~-----~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~y 95 (96)
T PF13335_consen 42 PLSSEAKKLLEQAAE-----KLNLSARGYHRILRVARTIADLEGSERITREHIAEALSY 95 (96)
T ss_pred CCCHHHHHHHHHHHH-----HcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHhC
Confidence 466676666655442 236899999999999999999999999999999999764
No 39
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=86.79 E-value=13 Score=37.95 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=73.0
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhhcC-----CCcccccCCCC--cccccceEeeCCcE
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNTA-----SLAPKKDYQTN--RLIPGVLQLADGSH 275 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN~~-----~l~P~kD~~~~--~L~sG~LQLa~gT~ 275 (443)
-..++.|+|-+| +-++.+.++|....++. .++.+.-..++.. -|--.+...++ .-..|.++.++||.
T Consensus 28 ~~~pVlI~GE~G----tGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGt 103 (326)
T PRK11608 28 LDKPVLIIGERG----TGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGT 103 (326)
T ss_pred CCCCEEEECCCC----CcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCe
Confidence 356899999998 67888888998888853 4666655544321 11111211112 23478999999999
Q ss_pred EEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 276 LIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 276 lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
|+|||.. |... -...|-.+++.+.+.- .-..-..++|+.++..|.
T Consensus 104 L~l~~i~~L~~~--------~Q~~L~~~l~~~~~~~--~g~~~~~~~~~RiI~~s~ 149 (326)
T PRK11608 104 LFLDELATAPML--------VQEKLLRVIEYGELER--VGGSQPLQVNVRLVCATN 149 (326)
T ss_pred EEeCChhhCCHH--------HHHHHHHHHhcCcEEe--CCCCceeeccEEEEEeCc
Confidence 9999986 4422 3667788888776332 122346778888877765
No 40
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=86.72 E-value=1.7 Score=40.32 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=72.9
Q ss_pred eeeeEeecCCCcchhhhHHHHHHHHHhhcCc--eEEEeeehhhhhcC-----CCcccccCC--CCcccccceEeeCCcEE
Q 013415 206 KLSLNLTCLSKESVSVFGNQVRLSVQNLLPF--TQCIPLTVNYLNTA-----SLAPKKDYQ--TNRLIPGVLQLADGSHL 276 (443)
Q Consensus 206 ~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~--s~~lpltl~~LN~~-----~l~P~kD~~--~~~L~sG~LQLa~gT~l 276 (443)
+.|+-|.|.++ +-++.+.+.|....++ .-++.+.-..++.. -|--.+..- ...-..|.|..|+||.|
T Consensus 22 ~~pVlI~GE~G----tGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL 97 (168)
T PF00158_consen 22 DLPVLITGETG----TGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGTL 97 (168)
T ss_dssp TS-EEEECSTT----SSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEE
T ss_pred CCCEEEEcCCC----CcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccceEE
Confidence 47899999998 6788889999988886 35666655444322 121122211 12456799999999999
Q ss_pred EEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 277 IIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 277 viDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
+|||.. |.. .-..-|-.+|+.+++.-- -..-..++|++++..|.
T Consensus 98 ~Ld~I~~L~~--------~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~st~ 142 (168)
T PF00158_consen 98 FLDEIEDLPP--------ELQAKLLRVLEEGKFTRL--GSDKPVPVDVRIIASTS 142 (168)
T ss_dssp EEETGGGS-H--------HHHHHHHHHHHHSEEECC--TSSSEEE--EEEEEEES
T ss_pred eecchhhhHH--------HHHHHHHHHHhhchhccc--cccccccccceEEeecC
Confidence 999996 443 346778899999875432 12346788999888887
No 41
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=86.43 E-value=26 Score=38.58 Aligned_cols=192 Identities=11% Similarity=0.074 Sum_probs=107.8
Q ss_pred eeeeeeeEeecCCCcchhhhHHHHHHHHHhh--------cCce--EEEeeehhhhhc-----CCCcccccCCCC---ccc
Q 013415 203 AVGKLSLNLTCLSKESVSVFGNQVRLSVQNL--------LPFT--QCIPLTVNYLNT-----ASLAPKKDYQTN---RLI 264 (443)
Q Consensus 203 ~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L--------~P~s--~~lpltl~~LN~-----~~l~P~kD~~~~---~L~ 264 (443)
+-...++.|.|.+| +-++.+.+.|... .++. -++.+.-..++. .-|--.+..-+| .-.
T Consensus 239 A~s~~pVLI~GE~G----TGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~ 314 (538)
T PRK15424 239 ARSSAAVLIQGETG----TGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGR 314 (538)
T ss_pred hCCCCcEEEECCCC----CCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCcccccc
Confidence 33567899999998 5677788888776 4442 244443333322 111111111122 135
Q ss_pred ccceEeeCCcEEEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCC-c-----cc
Q 013415 265 PGVLQLADGSHLIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN-I-----VP 337 (443)
Q Consensus 265 sG~LQLa~gT~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~-~-----lp 337 (443)
.|.+..|+||.|+|||.. |... -...|-.+++.+.+.-. -..-.+++|++++..|...-. + +-
T Consensus 315 ~Gl~e~A~gGTLfLdeI~~Lp~~--------~Q~kLl~~L~e~~~~r~--G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr 384 (538)
T PRK15424 315 AGLFEIAHGGTLFLDEIGEMPLP--------LQTRLLRVLEEKEVTRV--GGHQPVPVDVRVISATHCDLEEDVRQGRFR 384 (538)
T ss_pred CCchhccCCCEEEEcChHhCCHH--------HHHHHHhhhhcCeEEec--CCCceeccceEEEEecCCCHHHHHhcccch
Confidence 799999999999999996 4322 35567778887765421 223457889988887752110 0 11
Q ss_pred CceeeeeccCCCCCCCCC---ChhhHHHHHHHHHHh-ccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 013415 338 ADLVIPFQPSSAASFEVV---PAETLEAWRWYLASV-RSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLT 409 (443)
Q Consensus 338 ~D~~vpl~~~~~~~~~~~---~~~~L~~~R~Yl~~~-r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~ 409 (443)
.|+..-+....- .+.+. .++-...++.||... +..+..+++++.....+-.=..++-+.+=+-++|...+.
T Consensus 385 ~dL~yrL~~~~I-~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvie 459 (538)
T PRK15424 385 RDLFYRLSILRL-QLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLME 459 (538)
T ss_pred HHHHHHhcCCee-cCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHH
Confidence 121111100000 01111 223346778888764 344556888777666655545566666666788877766
No 42
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=84.42 E-value=11 Score=42.96 Aligned_cols=127 Identities=13% Similarity=0.174 Sum_probs=70.8
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhcc-cccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCc-eEEEeeehh
Q 013415 168 SLLRHLTSILGNDGIAAHLMLLHLLSR-VHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPF-TQCIPLTVN 245 (443)
Q Consensus 168 ~Ll~~La~~l~GD~laAeyLLL~L~S~-V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~-s~~lpltl~ 245 (443)
.+-..|..-+.|..-|-+-+.-++... +-......++|. +.|.|++| +-+..|.+.|...+-. ...+.|+
T Consensus 447 ~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~--~lf~Gp~G----vGKT~lA~~la~~l~~~~~~~d~s-- 518 (731)
T TIGR02639 447 NLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGS--FLFTGPTG----VGKTELAKQLAEALGVHLERFDMS-- 518 (731)
T ss_pred HHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCcee--EEEECCCC----ccHHHHHHHHHHHhcCCeEEEeCc--
Confidence 455666666677777777766554421 111122234443 68999998 5566666666666533 2233332
Q ss_pred hhhc----CCCc--c--cccCCCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeee
Q 013415 246 YLNT----ASLA--P--KKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVE 309 (443)
Q Consensus 246 ~LN~----~~l~--P--~kD~~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~ 309 (443)
.... ..+. | ...|+.+..-...+.-.+.++++|||.. ...-.-..+|-.++....+.
T Consensus 519 e~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEie-------ka~~~~~~~Ll~~ld~g~~~ 583 (731)
T TIGR02639 519 EYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIE-------KAHPDIYNILLQVMDYATLT 583 (731)
T ss_pred hhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechh-------hcCHHHHHHHHHhhccCeee
Confidence 1111 1111 1 1123333334445556678999999986 22233467888999988775
No 43
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=83.59 E-value=45 Score=34.94 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=70.0
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhh-----cCCCcccccCCCC--cccccceEeeCCcE
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLN-----TASLAPKKDYQTN--RLIPGVLQLADGSH 275 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN-----~~~l~P~kD~~~~--~L~sG~LQLa~gT~ 275 (443)
...++.|.|.++ +-+..+.+.+....++. .++.+.-..+. +.-|--.+..-++ .-..|.+..++||.
T Consensus 161 ~~~~vli~Ge~G----tGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (445)
T TIGR02915 161 SDITVLLLGESG----TGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGT 236 (445)
T ss_pred CCCCEEEECCCC----cCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCE
Confidence 457788999987 56777888888777653 23433323222 1112212221122 23578999999999
Q ss_pred EEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 276 LIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 276 lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
|+|||.. |... -...|-.+++.+.+.= .-..-+.++|++++..|.
T Consensus 237 l~l~~i~~l~~~--------~q~~l~~~l~~~~~~~--~~~~~~~~~~~rii~~~~ 282 (445)
T TIGR02915 237 LFLDEIGDLPLN--------LQAKLLRFLQERVIER--LGGREEIPVDVRIVCATN 282 (445)
T ss_pred EEEechhhCCHH--------HHHHHHHHHhhCeEEe--CCCCceeeeceEEEEecC
Confidence 9999996 4432 3567778888775321 112346788999988886
No 44
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=82.35 E-value=15 Score=42.09 Aligned_cols=128 Identities=15% Similarity=0.161 Sum_probs=65.7
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhcccc-cccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehh
Q 013415 167 ESLLRHLTSILGNDGIAAHLMLLHLLSRVH-ARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVN 245 (443)
Q Consensus 167 ~~Ll~~La~~l~GD~laAeyLLL~L~S~V~-~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~ 245 (443)
..|-..|...+.|...|.+.|.-++.-... ......++| ++.|.|.|+ +-+..+.+.|+..+- ..++-+...
T Consensus 450 ~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~--~~Lf~GP~G----vGKT~lAk~LA~~l~-~~~i~id~s 522 (758)
T PRK11034 450 KNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVG--SFLFAGPTG----VGKTEVTVQLSKALG-IELLRFDMS 522 (758)
T ss_pred HHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcc--eEEEECCCC----CCHHHHHHHHHHHhC-CCcEEeech
Confidence 345556666677888877766665542110 011224445 689999998 344555555555442 222222211
Q ss_pred hhhcC----CC--cc-c-ccCCCCcccccceEeeCCcEEEEecCC-CCcCcccccchhHHHHHHHHHHhCeee
Q 013415 246 YLNTA----SL--AP-K-KDYQTNRLIPGVLQLADGSHLIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVE 309 (443)
Q Consensus 246 ~LN~~----~l--~P-~-kD~~~~~L~sG~LQLa~gT~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~ 309 (443)
..... .+ .| - ..|+.+.+-...+.-.++++++|||.. +. ..-.++|-.+++.+.+.
T Consensus 523 e~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~--------~~v~~~LLq~ld~G~lt 587 (758)
T PRK11034 523 EYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH--------PDVFNLLLQVMDNGTLT 587 (758)
T ss_pred hhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh--------HHHHHHHHHHHhcCeee
Confidence 11110 00 01 0 011112222223334468899999996 33 22367888899888775
No 45
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=80.67 E-value=61 Score=35.18 Aligned_cols=181 Identities=18% Similarity=0.199 Sum_probs=100.4
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhhc-----CCCcccccCCCCc--ccccceEeeCCcE
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNT-----ASLAPKKDYQTNR--LIPGVLQLADGSH 275 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN~-----~~l~P~kD~~~~~--L~sG~LQLa~gT~ 275 (443)
.+.++.|+|.+| +-+..+.+.|....++. .++.+.-..+.. .-|--.+..-++. =..|.+..++||.
T Consensus 209 ~~~pVlI~Ge~G----tGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGt 284 (509)
T PRK05022 209 SDLNVLILGETG----VGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGT 284 (509)
T ss_pred CCCcEEEECCCC----ccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhcCCCE
Confidence 467899999998 67888888998888764 244443333321 1111112111121 1468899999999
Q ss_pred EEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCC------CcccCce-----eee
Q 013415 276 LIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS------NIVPADL-----VIP 343 (443)
Q Consensus 276 lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS------~~lp~D~-----~vp 343 (443)
|+|||.. |.. .-...|-.+++.+.+.= .-..-..++|++++..|...- .-+..|+ .++
T Consensus 285 L~ldeI~~L~~--------~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~ 354 (509)
T PRK05022 285 LFLDEIGELPL--------ALQAKLLRVLQYGEIQR--VGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFP 354 (509)
T ss_pred EEecChhhCCH--------HHHHHHHHHHhcCCEee--CCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccE
Confidence 9999996 432 23556777787765421 112345778888888875321 0122222 111
Q ss_pred e--ccCCCCCCCCCChhhHHHHHHHHHHhc-c---CCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 013415 344 F--QPSSAASFEVVPAETLEAWRWYLASVR-S---LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMG 411 (443)
Q Consensus 344 l--~~~~~~~~~~~~~~~L~~~R~Yl~~~r-~---~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~La 411 (443)
+ .|=.+. .++....++.||.... . ....|++++.+.++. -+.+=+-++|...+.-|
T Consensus 355 i~lPpLreR-----~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~-------y~WPGNvrEL~~~i~ra 416 (509)
T PRK05022 355 LSVPPLRER-----GDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLA-------YDWPGNVRELEHVISRA 416 (509)
T ss_pred eeCCCchhc-----hhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-------CCCCCcHHHHHHHHHHH
Confidence 1 111110 1223356677776653 2 236788887776632 34444556666666533
No 46
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=79.03 E-value=42 Score=36.41 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=108.7
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCceE--EEeee-----hhhhhcCCCcccccCCCC--cccccceEeeCCcE
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ--CIPLT-----VNYLNTASLAPKKDYQTN--RLIPGVLQLADGSH 275 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~--~lplt-----l~~LN~~~l~P~kD~~~~--~L~sG~LQLa~gT~ 275 (443)
-+.++.|+|-+| +-++-+..+|....+|.. ++++. -+-+-+--|-..|-.-|| .=..|.+|.|+||.
T Consensus 163 s~a~VLI~GESG----tGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGT 238 (464)
T COG2204 163 SDASVLITGESG----TGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGT 238 (464)
T ss_pred CCCCEEEECCCC----CcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCCce
Confidence 456899999987 678888999999999843 33322 222222233334432233 45789999999999
Q ss_pred EEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCCcccCceeeeeccCCCC-C--
Q 013415 276 LIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAA-S-- 351 (443)
Q Consensus 276 lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~~lp~D~~vpl~~~~~~-~-- 351 (443)
|.|||.. |. ..=-.-|-.+++.+++. .--..-.+++|++++.-|. -|+.=.+....-. +
T Consensus 239 LfLDEI~~mp--------l~~Q~kLLRvLqe~~~~--rvG~~~~i~vdvRiIaaT~-------~dL~~~v~~G~FReDLy 301 (464)
T COG2204 239 LFLDEIGEMP--------LELQVKLLRVLQEREFE--RVGGNKPIKVDVRIIAATN-------RDLEEEVAAGRFREDLY 301 (464)
T ss_pred EEeeccccCC--------HHHHHHHHHHHHcCeeE--ecCCCcccceeeEEEeecC-------cCHHHHHHcCCcHHHHH
Confidence 9999996 43 22233455667767543 2334557888999887776 3322222111110 0
Q ss_pred ---------CCCC---ChhhHHHHHHHHHHhcc----CCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 013415 352 ---------FEVV---PAETLEAWRWYLASVRS----LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMS 415 (443)
Q Consensus 352 ---------~~~~---~~~~L~~~R~Yl~~~r~----~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllA 415 (443)
+.+. .++-...++.|+..+.. ....|++++.+.+ +.-+.+=+-++|...+. |++.
T Consensus 302 yRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L-------~~y~WPGNVREL~N~ve--r~~i 372 (464)
T COG2204 302 YRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAAL-------LAYDWPGNVRELENVVE--RAVI 372 (464)
T ss_pred hhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH-------HhCCCChHHHHHHHHHH--HHHh
Confidence 0111 23345678888877643 2457888877765 33344445566666555 3344
Q ss_pred HHcC
Q 013415 416 ASFG 419 (443)
Q Consensus 416 lS~G 419 (443)
++.|
T Consensus 373 l~~~ 376 (464)
T COG2204 373 LSEG 376 (464)
T ss_pred cCCc
Confidence 4433
No 47
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=78.41 E-value=7.1 Score=40.02 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=72.0
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhhcC-----CCcccccCCCC--cccccceEeeCCcE
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNTA-----SLAPKKDYQTN--RLIPGVLQLADGSH 275 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN~~-----~l~P~kD~~~~--~L~sG~LQLa~gT~ 275 (443)
-..++.|+|-+| +-++.+.+.|....++. .++.+....++.. -|--.+..-++ .-..|.+..++||.
T Consensus 21 ~~~pVLI~GE~G----tGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGt 96 (329)
T TIGR02974 21 LDRPVLIIGERG----TGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGT 96 (329)
T ss_pred CCCCEEEECCCC----ChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCCE
Confidence 357899999998 67888888888888763 4555543333221 12111211111 34689999999999
Q ss_pred EEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 276 LIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 276 lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
|+|||.. |... -...|-.+++.+.+.= .-..-..++|+.++..|.
T Consensus 97 L~Ldei~~L~~~--------~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiI~at~ 142 (329)
T TIGR02974 97 LFLDELATASLL--------VQEKLLRVIEYGEFER--VGGSQTLQVDVRLVCATN 142 (329)
T ss_pred EEeCChHhCCHH--------HHHHHHHHHHcCcEEe--cCCCceeccceEEEEech
Confidence 9999996 4432 3566778887775332 122345778888887775
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=75.93 E-value=62 Score=30.28 Aligned_cols=61 Identities=13% Similarity=-0.002 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 013415 360 LEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVK 432 (443)
Q Consensus 360 L~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~ 432 (443)
...++.|+. .....+++++.++|...| +=+..+|..+|.-+...|+..|. ++|.+...+++
T Consensus 165 ~~~l~~~~~---~~~~~~~~~~l~~L~~~~--------~gn~r~L~~~l~~~~~~~~~~~~-~i~~~~~~~~~ 225 (226)
T TIGR03420 165 IAALQSRAA---RRGLQLPDEVADYLLRHG--------SRDMGSLMALLDALDRASLAAKR-KITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHH---HcCCCCCHHHHHHHHHhc--------cCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHh
Confidence 345555433 345779999888886543 33579999999998888888774 69988777654
No 49
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=75.59 E-value=20 Score=38.43 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 013415 398 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLR 438 (443)
Q Consensus 398 ~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~LE~~R 438 (443)
..+..|+..+++-|-.+|+-.|+..++.+|+..|++--..|
T Consensus 387 g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 387 ELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 47889999999999999999999999999999998765443
No 50
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=75.18 E-value=90 Score=30.86 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=32.4
Q ss_pred CCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 373 LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 373 ~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
....+++++.+.|-+ ..... .+.+.+++.-+..+|...+...++.+.+..+...
T Consensus 175 ~~~~~~~~al~~ia~------~~~G~--pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 175 LNVEIEPEAALEIAR------RSRGT--PRIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred hCCCcCHHHHHHHHH------HhCCC--cchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 466788887766522 22221 2444455554444555567677888888877653
No 51
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=74.74 E-value=42 Score=37.37 Aligned_cols=112 Identities=11% Similarity=0.092 Sum_probs=69.4
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhhcC----CCcccccCCCCcccccceEeeCCcEEEE
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNTA----SLAPKKDYQTNRLIPGVLQLADGSHLII 278 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN~~----~l~P~kD~~~~~L~sG~LQLa~gT~lvi 278 (443)
...++.|.|-+| +-++.+.++|.+..++. .++.+.-..+... .|.-...+....-..|.+..|+||.|+|
T Consensus 347 ~~~pvli~Ge~G----tGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~l 422 (638)
T PRK11388 347 SSFPVLLCGEEG----VGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFL 422 (638)
T ss_pred cCCCEEEECCCC----cCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEE
Confidence 456899999998 66888888888887753 3444433322211 1111111112233578899999999999
Q ss_pred ecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 279 DETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 279 DEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
||.. |... -...|-.+++.+.+.=- ...-..++|+.++..|.
T Consensus 423 dei~~l~~~--------~Q~~Ll~~l~~~~~~~~--~~~~~~~~~~riI~~t~ 465 (638)
T PRK11388 423 EKVEYLSPE--------LQSALLQVLKTGVITRL--DSRRLIPVDVRVIATTT 465 (638)
T ss_pred cChhhCCHH--------HHHHHHHHHhcCcEEeC--CCCceEEeeEEEEEecc
Confidence 9986 4422 24567778877765311 23445778888777665
No 52
>PRK08727 hypothetical protein; Validated
Probab=72.19 E-value=96 Score=29.89 Aligned_cols=177 Identities=14% Similarity=0.100 Sum_probs=86.2
Q ss_pred eeEeecCCCcchhhhHHHHHHHH----HhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEeeCCcEEEEecCCC
Q 013415 208 SLNLTCLSKESVSVFGNQVRLSV----QNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQL 283 (443)
Q Consensus 208 sLnl~~~p~~~~~~~~~~L~~~l----~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa~gT~lviDEt~L 283 (443)
.+-|.|.+| +-++.|...+ ..--.++.|+++.- +.. . +..-.-.+.+-..|||||...
T Consensus 43 ~l~l~G~~G----~GKThL~~a~~~~~~~~~~~~~y~~~~~--~~~-----~-------~~~~~~~l~~~dlLiIDDi~~ 104 (233)
T PRK08727 43 WLYLSGPAG----TGKTHLALALCAAAEQAGRSSAYLPLQA--AAG-----R-------LRDALEALEGRSLVALDGLES 104 (233)
T ss_pred eEEEECCCC----CCHHHHHHHHHHHHHHcCCcEEEEeHHH--hhh-----h-------HHHHHHHHhcCCEEEEeCccc
Confidence 388999998 3455555543 32234677887531 110 0 000000122335799999975
Q ss_pred CcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCCcccCceeeeeccCCCC---C-CCCCChhh
Q 013415 284 ETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAA---S-FEVVPAET 359 (443)
Q Consensus 284 ~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~~lp~D~~vpl~~~~~~---~-~~~~~~~~ 359 (443)
-.|+-. ...++.++++.. .....++++.|. ..|.++..-+.+-... . .-...+.+
T Consensus 105 l~~~~~-----~~~~lf~l~n~~------------~~~~~~vI~ts~----~~p~~l~~~~~dL~SRl~~~~~~~l~~~~ 163 (233)
T PRK08727 105 IAGQRE-----DEVALFDFHNRA------------RAAGITLLYTAR----QMPDGLALVLPDLRSRLAQCIRIGLPVLD 163 (233)
T ss_pred ccCChH-----HHHHHHHHHHHH------------HHcCCeEEEECC----CChhhhhhhhHHHHHHHhcCceEEecCCC
Confidence 555211 123444444422 111345666666 2334443222211111 1 11112222
Q ss_pred HHHHHHHHHH-hccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-H--HHHHcCCCCCCHHHHHHHHHHH
Q 013415 360 LEAWRWYLAS-VRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGR-L--MSASFGETSLSLEHWQMVKELE 435 (443)
Q Consensus 360 L~~~R~Yl~~-~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaR-l--lAlS~G~~~lt~e~W~~a~~LE 435 (443)
.+..+.+|.. |+..+..+++++.++|-+.+ + .|+..++.+-. + .|...+ ..+|.+.++.+++.+
T Consensus 164 ~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~------~-----rd~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~~~ 231 (233)
T PRK08727 164 DVARAAVLRERAQRRGLALDEAAIDWLLTHG------E-----RELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLEEG 231 (233)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC------C-----CCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHhhc
Confidence 3455555554 44457899999888874432 2 33333332222 2 244445 479999999887654
No 53
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=71.69 E-value=1.2e+02 Score=32.93 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=68.6
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhhcC-----CCcccccCCCC--cccccceEeeCCcE
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNTA-----SLAPKKDYQTN--RLIPGVLQLADGSH 275 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN~~-----~l~P~kD~~~~--~L~sG~LQLa~gT~ 275 (443)
...++.|.|.+| +-++.+.+.|....++. .++.+.-..++.. -|--.+..-++ .-..|.+..++||.
T Consensus 218 ~~~pvli~Ge~G----tGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~Gt 293 (534)
T TIGR01817 218 SNSTVLLRGESG----TGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGT 293 (534)
T ss_pred cCCCEEEECCCC----ccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCe
Confidence 345899999998 66888888888887753 4555544333221 11111111111 22578899999999
Q ss_pred EEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 276 LIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 276 lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
|+|||.. |... -...|-.+++.+.+.= .-..-..++|+.++..|.
T Consensus 294 L~ldei~~L~~~--------~Q~~Ll~~l~~~~~~~--~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 294 LFLDEIGEISPA--------FQAKLLRVLQEGEFER--VGGNRTLKVDVRLVAATN 339 (534)
T ss_pred EEEechhhCCHH--------HHHHHHHHHhcCcEEE--CCCCceEeecEEEEEeCC
Confidence 9999996 4422 2456777777665321 112335677888777664
No 54
>CHL00095 clpC Clp protease ATP binding subunit
Probab=70.85 E-value=51 Score=38.10 Aligned_cols=136 Identities=10% Similarity=0.096 Sum_probs=77.9
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhc-ccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhc----CceEEEee
Q 013415 168 SLLRHLTSILGNDGIAAHLMLLHLLS-RVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLL----PFTQCIPL 242 (443)
Q Consensus 168 ~Ll~~La~~l~GD~laAeyLLL~L~S-~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~----P~s~~lpl 242 (443)
.|-..|...+.|...|-+.+.-++.. ++-.+....++|. +.|.|+++ +-+..|...|...+ .....+.|
T Consensus 502 ~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~--~lf~Gp~G----vGKt~lA~~LA~~l~~~~~~~~~~d~ 575 (821)
T CHL00095 502 HMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIAS--FLFSGPTG----VGKTELTKALASYFFGSEDAMIRLDM 575 (821)
T ss_pred HHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceE--EEEECCCC----CcHHHHHHHHHHHhcCCccceEEEEc
Confidence 46667777778899888888766642 2222333455553 56799998 56777777777665 22333333
Q ss_pred ehhhhhc----CCC--ccc--ccCCCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeecc
Q 013415 243 TVNYLNT----ASL--APK--KDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEY 314 (443)
Q Consensus 243 tl~~LN~----~~l--~P~--kD~~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y 314 (443)
+ .... ..+ .|- ..|+.+..-...+.-.+.++++|||.. +....=.++|-.+++...+.- ...
T Consensus 576 s--~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeie-------ka~~~v~~~Llq~le~g~~~d-~~g 645 (821)
T CHL00095 576 S--EYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIE-------KAHPDIFNLLLQILDDGRLTD-SKG 645 (821)
T ss_pred h--hccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChh-------hCCHHHHHHHHHHhccCceec-CCC
Confidence 2 1111 001 121 122222223344555667899999996 222223678888999888773 344
Q ss_pred cceee
Q 013415 315 YKMEM 319 (443)
Q Consensus 315 ~~~e~ 319 (443)
+.+.|
T Consensus 646 ~~v~~ 650 (821)
T CHL00095 646 RTIDF 650 (821)
T ss_pred cEEec
Confidence 45555
No 55
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=70.70 E-value=33 Score=35.38 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 398 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 398 ~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
..+..|+..+.+-|...|...|...++.+|+..|.+
T Consensus 326 g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 326 GASGADLKAICTEAGMFAIREERDYVTMDDFIKAVE 361 (364)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 478899999999999999999999999999999874
No 56
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=70.46 E-value=58 Score=34.46 Aligned_cols=38 Identities=3% Similarity=0.040 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 013415 398 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELE 435 (443)
Q Consensus 398 ~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~LE 435 (443)
..+..|+..+.+-|.+.|...++..++.+||..|++--
T Consensus 349 g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 349 KISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 47899999999999999999999999999999997754
No 57
>PRK08084 DNA replication initiation factor; Provisional
Probab=69.16 E-value=71 Score=30.87 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=32.9
Q ss_pred hccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 370 VRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 370 ~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
++..+..+++++.++|-. +.++ +.+.+...|...-..++..+ ..+|.+.++.++.|
T Consensus 180 a~~~~~~l~~~v~~~L~~------~~~~--d~r~l~~~l~~l~~~~l~~~-~~it~~~~k~~l~~ 235 (235)
T PRK08084 180 ARLRGFELPEDVGRFLLK------RLDR--EMRTLFMTLDQLDRASITAQ-RKLTIPFVKEILKL 235 (235)
T ss_pred HHHcCCCCCHHHHHHHHH------hhcC--CHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHcC
Confidence 344468999999888843 3332 23444444443222233344 56999998888753
No 58
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=69.07 E-value=59 Score=34.07 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 398 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 398 ~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
..+..|+..+.+-|-..|...+...++.+|...|.+-
T Consensus 335 g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~ 371 (389)
T PRK03992 335 GASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEK 371 (389)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 4789999999999999999999999999999998653
No 59
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=68.78 E-value=1.6e+02 Score=31.08 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=71.5
Q ss_pred eeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhhcC-----CCcccccCCC--CcccccceEeeCC
Q 013415 203 AVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNTA-----SLAPKKDYQT--NRLIPGVLQLADG 273 (443)
Q Consensus 203 ~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN~~-----~l~P~kD~~~--~~L~sG~LQLa~g 273 (443)
.....++-|+|.+| +-+..+...|....++. .++.+....+... -|--.+..-+ .....|.+..++|
T Consensus 158 ~~~~~~vli~Ge~G----tGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~ 233 (469)
T PRK10923 158 SRSSISVLINGESG----TGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADG 233 (469)
T ss_pred hccCCeEEEEeCCC----CcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCC
Confidence 34677899999998 56777888888887753 3454543333221 1111111111 2456899999999
Q ss_pred cEEEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 274 SHLIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 274 T~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
|.|+|||.. |.. .-...|-.+++.+++.=. . ......+|+++++.|.
T Consensus 234 Gtl~l~~i~~l~~--------~~q~~L~~~l~~~~~~~~-~-~~~~~~~~~rii~~~~ 281 (469)
T PRK10923 234 GTLFLDEIGDMPL--------DVQTRLLRVLADGQFYRV-G-GYAPVKVDVRIIAATH 281 (469)
T ss_pred CEEEEeccccCCH--------HHHHHHHHHHhcCcEEeC-C-CCCeEEeeEEEEEeCC
Confidence 999999995 432 235677788887754311 1 1224668899988885
No 60
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=68.41 E-value=70 Score=37.17 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=70.4
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhcccc-cccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCc----eEEEeee
Q 013415 169 LLRHLTSILGNDGIAAHLMLLHLLSRVH-ARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPF----TQCIPLT 243 (443)
Q Consensus 169 Ll~~La~~l~GD~laAeyLLL~L~S~V~-~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~----s~~lplt 243 (443)
|-..|...+.|..-|-+.+.-++...-. ......+.| ++.|.|.+| +-+..+...|...+-. ..++.|+
T Consensus 559 l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~--~~Lf~Gp~G----vGKt~lA~~La~~l~~~~~~~i~~d~s 632 (852)
T TIGR03346 559 MEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIG--SFLFLGPTG----VGKTELAKALAEFLFDDEDAMVRIDMS 632 (852)
T ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCe--EEEEEcCCC----CCHHHHHHHHHHHhcCCCCcEEEEech
Confidence 3455666778888888888777654211 111123334 456899998 6677788888776532 2333332
Q ss_pred hhhhhcC----CC--ccc--ccCCCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeee
Q 013415 244 VNYLNTA----SL--APK--KDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVE 309 (443)
Q Consensus 244 l~~LN~~----~l--~P~--kD~~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~ 309 (443)
..... .+ .|- -.|+.+..-.+.+.-.++.+++|||.. ++ --.-...|-.+++.+.+.
T Consensus 633 --~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeie----ka---~~~v~~~Ll~~l~~g~l~ 697 (852)
T TIGR03346 633 --EYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVE----KA---HPDVFNVLLQVLDDGRLT 697 (852)
T ss_pred --hhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccc----cC---CHHHHHHHHHHHhcCcee
Confidence 11111 11 111 112212222334455667899999995 22 222367888999988876
No 61
>PRK06893 DNA replication initiation factor; Validated
Probab=67.74 E-value=1.2e+02 Score=29.15 Aligned_cols=175 Identities=15% Similarity=0.115 Sum_probs=86.3
Q ss_pred eeeEeecCCCcchhhhHHHHHHHHHhh----cCceEEEeeehhhhhcCCCcccccCCCCcccccceEeeCCcEEEEecCC
Q 013415 207 LSLNLTCLSKESVSVFGNQVRLSVQNL----LPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQ 282 (443)
Q Consensus 207 ~sLnl~~~p~~~~~~~~~~L~~~l~~L----~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa~gT~lviDEt~ 282 (443)
-++-|.|.|| +-++.|...+.+- -+.+.|++++-.. .+.+ .+.. .+.+...|+|||..
T Consensus 40 ~~l~l~G~~G----~GKThL~~ai~~~~~~~~~~~~y~~~~~~~----~~~~-------~~~~---~~~~~dlLilDDi~ 101 (229)
T PRK06893 40 PFFYIWGGKS----SGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ----YFSP-------AVLE---NLEQQDLVCLDDLQ 101 (229)
T ss_pred CeEEEECCCC----CCHHHHHHHHHHHHHHcCCCeEEeeHHHhh----hhhH-------HHHh---hcccCCEEEEeChh
Confidence 3578899998 4566677666543 2677888774210 0111 1111 13456789999998
Q ss_pred CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCCcccCceeeeeccCCC-------CCCCCC
Q 013415 283 LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSA-------ASFEVV 355 (443)
Q Consensus 283 L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~~lp~D~~vpl~~~~~-------~~~~~~ 355 (443)
.-.|. . .. -.+|.++++.- | .-...++|++.... |..+...+.+-.. ..+.++
T Consensus 102 ~~~~~--~-~~--~~~l~~l~n~~---~---------~~~~~illits~~~---p~~l~~~~~~L~sRl~~g~~~~l~~p 161 (229)
T PRK06893 102 AVIGN--E-EW--ELAIFDLFNRI---K---------EQGKTLLLISADCS---PHALSIKLPDLASRLTWGEIYQLNDL 161 (229)
T ss_pred hhcCC--h-HH--HHHHHHHHHHH---H---------HcCCcEEEEeCCCC---hHHccccchhHHHHHhcCCeeeCCCC
Confidence 55441 1 11 22455555521 0 11344555554332 3333332221111 012333
Q ss_pred ChhhH-HHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH--HHHHcCCCCCCHHHHHHHH
Q 013415 356 PAETL-EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRL--MSASFGETSLSLEHWQMVK 432 (443)
Q Consensus 356 ~~~~L-~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRl--lAlS~G~~~lt~e~W~~a~ 432 (443)
++++. ..+++.. ...+..+++++.++|-..+ .+. .+.|...|. || .++..|+ .+|.+.++.++
T Consensus 162 d~e~~~~iL~~~a---~~~~l~l~~~v~~~L~~~~------~~d--~r~l~~~l~--~l~~~~~~~~~-~it~~~v~~~L 227 (229)
T PRK06893 162 TDEQKIIVLQRNA---YQRGIELSDEVANFLLKRL------DRD--MHTLFDALD--LLDKASLQAQR-KLTIPFVKEIL 227 (229)
T ss_pred CHHHHHHHHHHHH---HHcCCCCCHHHHHHHHHhc------cCC--HHHHHHHHH--HHHHHHHhcCC-CCCHHHHHHHh
Confidence 33322 2333222 2346889999998884333 221 244444333 23 2333344 69999888876
Q ss_pred H
Q 013415 433 E 433 (443)
Q Consensus 433 ~ 433 (443)
.
T Consensus 228 ~ 228 (229)
T PRK06893 228 G 228 (229)
T ss_pred c
Confidence 4
No 62
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=65.13 E-value=26 Score=31.57 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=57.0
Q ss_pred eeEeecCCCcchhhhHHHHHHHHHhhcCce-EEEeeeh----hhhhcCCCcccccCCCC--cccccceEeeCCcEEEEec
Q 013415 208 SLNLTCLSKESVSVFGNQVRLSVQNLLPFT-QCIPLTV----NYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDE 280 (443)
Q Consensus 208 sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s-~~lpltl----~~LN~~~l~P~kD~~~~--~L~sG~LQLa~gT~lviDE 280 (443)
|+.|.|.|+ ..+..+.+.+...+-.. ..+.+|. ..+.- .|..|..++ ++..|.+- ...+++||
T Consensus 1 HvLleg~PG----~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G---~~v~~~~~~~f~~~~GPif---~~ill~DE 70 (131)
T PF07726_consen 1 HVLLEGVPG----VGKTTLAKALARSLGLSFKRIQFTPDLLPSDILG---FPVYDQETGEFEFRPGPIF---TNILLADE 70 (131)
T ss_dssp -EEEES-------HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHE---EEEEETTTTEEEEEE-TT----SSEEEEET
T ss_pred CEeeECCCc----cHHHHHHHHHHHHcCCceeEEEecCCCCccccee---eeeeccCCCeeEeecChhh---hceeeecc
Confidence 577889997 56666666666655442 2244442 22322 234444444 55667665 46899999
Q ss_pred CCCCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 281 TQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 281 t~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
.. -.--+-..||-++|+..+|.++ ...++.--|+.|+-.
T Consensus 71 iN-------rappktQsAlLeam~Er~Vt~~----g~~~~lp~pf~ViAT 109 (131)
T PF07726_consen 71 IN-------RAPPKTQSALLEAMEERQVTID----GQTYPLPDPFFVIAT 109 (131)
T ss_dssp GG-------GS-HHHHHHHHHHHHHSEEEET----TEEEE--SS-EEEEE
T ss_pred cc-------cCCHHHHHHHHHHHHcCeEEeC----CEEEECCCcEEEEEe
Confidence 84 4455668999999999999987 444555666666654
No 63
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=63.27 E-value=2e+02 Score=30.14 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=64.7
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhhc-----CCCcccccCCCC--cccccceEeeCCcE
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNT-----ASLAPKKDYQTN--RLIPGVLQLADGSH 275 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN~-----~~l~P~kD~~~~--~L~sG~LQLa~gT~ 275 (443)
...++.+.|.++ +-++.+...+..-.++. .++.+....++. .-|--.+..-++ .-..|.+..++||.
T Consensus 165 ~~~~vli~Ge~G----tGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 240 (457)
T PRK11361 165 SQASVLISGESG----TGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGT 240 (457)
T ss_pred CCcEEEEEcCCC----ccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCE
Confidence 446788899887 45666777776655542 233333222221 111111111111 23578999999999
Q ss_pred EEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 276 LIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 276 lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
|+|||.. |... -...|-.+++.+.+. -.-..-.+++|+.++..|.
T Consensus 241 l~ld~i~~l~~~--------~q~~L~~~l~~~~~~--~~~~~~~~~~~~rii~~t~ 286 (457)
T PRK11361 241 LLLDEIGEMPLV--------LQAKLLRILQEREFE--RIGGHQTIKVDIRIIAATN 286 (457)
T ss_pred EEEechhhCCHH--------HHHHHHHHHhcCcEE--eCCCCceeeeceEEEEeCC
Confidence 9999986 4432 256677777776432 1122345778888877775
No 64
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=62.98 E-value=47 Score=35.35 Aligned_cols=136 Identities=16% Similarity=0.146 Sum_probs=72.5
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHh---cccccc-c--CceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEE
Q 013415 167 ESLLRHLTSILGNDGIAAHLMLLHLL---SRVHAR-I--DNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCI 240 (443)
Q Consensus 167 ~~Ll~~La~~l~GD~laAeyLLL~L~---S~V~~r-~--d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~l 240 (443)
.++..+|...+.|-..|.+.|...+. -++... . +...+.+-++.|.|.|+ +-+..|.+.|+..+..- ++
T Consensus 63 ~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~G----tGKT~lAr~lA~~l~~p-f~ 137 (412)
T PRK05342 63 KEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTG----SGKTLLAQTLARILDVP-FA 137 (412)
T ss_pred HHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCC----CCHHHHHHHHHHHhCCC-ce
Confidence 34566666667788888888866553 222111 0 13456778999999998 45666666666554321 11
Q ss_pred eeehhhhhcCCCcccccCCCCcc------cccceEeeCCcEEEEecCC-CCcC------cccccchhHHHHHHHHHHhCe
Q 013415 241 PLTVNYLNTASLAPKKDYQTNRL------IPGVLQLADGSHLIIDETQ-LETG------TLNSTGVENARLLKNLMEFQK 307 (443)
Q Consensus 241 pltl~~LN~~~l~P~kD~~~~~L------~sG~LQLa~gT~lviDEt~-L~~G------~L~~~Gv~N~~aL~~li~~Q~ 307 (443)
.+....++...++-. |. .+.| ..|.++.+.++.++|||.. |... .=+-.|..=.++|-.+|+...
T Consensus 138 ~id~~~l~~~gyvG~-d~-e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~ 215 (412)
T PRK05342 138 IADATTLTEAGYVGE-DV-ENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTV 215 (412)
T ss_pred ecchhhcccCCcccc-hH-HHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCe
Confidence 122222221111100 10 0111 1244566789999999998 4321 001112223688999998554
Q ss_pred ee
Q 013415 308 VE 309 (443)
Q Consensus 308 v~ 309 (443)
+.
T Consensus 216 ~~ 217 (412)
T PRK05342 216 AS 217 (412)
T ss_pred EE
Confidence 43
No 65
>PRK10865 protein disaggregation chaperone; Provisional
Probab=59.19 E-value=97 Score=36.14 Aligned_cols=128 Identities=11% Similarity=0.110 Sum_probs=68.6
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhccc-ccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehh
Q 013415 169 LLRHLTSILGNDGIAAHLMLLHLLSRV-HARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVN 245 (443)
Q Consensus 169 Ll~~La~~l~GD~laAeyLLL~L~S~V-~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~ 245 (443)
|-..|...+.|..-|-+-|.-++-... -......++| ++.|.|.+| +-+..+...|...+... .++.+...
T Consensus 562 l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~--~~Lf~Gp~G----~GKT~lA~aLa~~l~~~~~~~i~id~s 635 (857)
T PRK10865 562 MEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIG--SFLFLGPTG----VGKTELCKALANFMFDSDDAMVRIDMS 635 (857)
T ss_pred HHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCc--eEEEECCCC----CCHHHHHHHHHHHhhcCCCcEEEEEhH
Confidence 444555556566666555555443211 0111223444 678999998 55777777777666422 23333322
Q ss_pred hhhcC----CCc--c-cc-cCCCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeee
Q 013415 246 YLNTA----SLA--P-KK-DYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVE 309 (443)
Q Consensus 246 ~LN~~----~l~--P-~k-D~~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~ 309 (443)
.+... .+. | -. .|+.+..-.+.++..++++|+|||.. ++ ...-...|-.+++.+.+.
T Consensus 636 e~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEie----ka---~~~v~~~Ll~ile~g~l~ 700 (857)
T PRK10865 636 EFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVE----KA---HPDVFNILLQVLDDGRLT 700 (857)
T ss_pred HhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehh----hC---CHHHHHHHHHHHhhCcee
Confidence 22211 111 1 10 12222233445566678999999995 22 222477888899888765
No 66
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=58.94 E-value=2.1e+02 Score=28.95 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=37.5
Q ss_pred cCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 372 SLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 372 ~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
..+..+++++.++|- +..+. +.+.+..++.-++..|...+...++.+....+.+.
T Consensus 195 ~~~~~~~~~~~~~ia------~~~~G--~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 195 ILGVEIDEEGALEIA------RRSRG--TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred HcCCCcCHHHHHHHH------HHcCC--CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 356788998777663 22222 23677777777777777777778888888877643
No 67
>PRK15115 response regulator GlrR; Provisional
Probab=57.06 E-value=2.5e+02 Score=29.33 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=69.4
Q ss_pred eeeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhhc-----CCCcccccCCCC--cccccceEeeCCc
Q 013415 204 VGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNT-----ASLAPKKDYQTN--RLIPGVLQLADGS 274 (443)
Q Consensus 204 lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN~-----~~l~P~kD~~~~--~L~sG~LQLa~gT 274 (443)
-...++.|.|.++ +-+..+...+....++. .++.+.-..++. .-|--.+...++ ....|.+..++||
T Consensus 155 ~~~~~vli~Ge~G----tGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 155 QSDVSVLINGQSG----TGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred cCCCeEEEEcCCc----chHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 3567888999987 45677788887777753 344444333321 111111111111 3467899999999
Q ss_pred EEEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 275 HLIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 275 ~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
.|+|||.. |... -...|-.+++.+++. .--..-...+|+.++..|.
T Consensus 231 tl~l~~i~~l~~~--------~q~~L~~~l~~~~~~--~~g~~~~~~~~~rii~~~~ 277 (444)
T PRK15115 231 TLFLDEIGDMPAP--------LQVKLLRVLQERKVR--PLGSNRDIDIDVRIISATH 277 (444)
T ss_pred EEEEEccccCCHH--------HHHHHHHHHhhCCEE--eCCCCceeeeeEEEEEeCC
Confidence 99999996 4432 256677788877652 2223346777888887665
No 68
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=56.34 E-value=2.6e+02 Score=31.48 Aligned_cols=181 Identities=14% Similarity=0.161 Sum_probs=98.7
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhhc-----CCCcccccCCCC--cccccceEeeCCcE
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNT-----ASLAPKKDYQTN--RLIPGVLQLADGSH 275 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN~-----~~l~P~kD~~~~--~L~sG~LQLa~gT~ 275 (443)
...++-|.|.+| +-++.+...|....++. .++.+.-..++. ..|--.+..-++ .-..|.+..++||.
T Consensus 398 ~~~pVLI~GE~G----TGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~Gt 473 (686)
T PRK15429 398 SDSTVLILGETG----TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 473 (686)
T ss_pred CCCCEEEECCCC----cCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchhhHHHhcCCCe
Confidence 567899999998 66888888888877743 444444333322 112211111111 22457889999999
Q ss_pred EEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCC------CcccCce-------e
Q 013415 276 LIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS------NIVPADL-------V 341 (443)
Q Consensus 276 lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS------~~lp~D~-------~ 341 (443)
|+|||.. |.. .=...|..+++.+.+.-- -..-.+++|++++..|...- .-+-.|+ .
T Consensus 474 L~Ldei~~L~~--------~~Q~~L~~~l~~~~~~~~--g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~ 543 (686)
T PRK15429 474 LFLDEVGDMPL--------ELQPKLLRVLQEQEFERL--GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFP 543 (686)
T ss_pred EEEechhhCCH--------HHHHHHHHHHHhCCEEeC--CCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeE
Confidence 9999986 332 225567778877643211 12234567888777775211 0111111 1
Q ss_pred eeeccCCCCCCCCCChhhHHHHHHHHHHh-ccC--C-CcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 013415 342 IPFQPSSAASFEVVPAETLEAWRWYLASV-RSL--P-HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMG 411 (443)
Q Consensus 342 vpl~~~~~~~~~~~~~~~L~~~R~Yl~~~-r~~--~-~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~La 411 (443)
|.+.|=.+. .++-...++.|+... +.. . ..|++++.+.+ ++-+.+=+-++|...+.-|
T Consensus 544 i~lPpLreR-----~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L-------~~y~WPGNvrEL~~~i~~a 605 (686)
T PRK15429 544 IHLPPLRER-----PEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTL-------SNMEWPGNVRELENVIERA 605 (686)
T ss_pred EeCCChhhh-----HhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH-------HhCCCCCcHHHHHHHHHHH
Confidence 111111110 122335777787764 322 2 35888877665 3344455567777666533
No 69
>CHL00176 ftsH cell division protein; Validated
Probab=55.26 E-value=2.5e+02 Score=31.81 Aligned_cols=36 Identities=17% Similarity=0.389 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 398 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 398 ~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
..+..||..++.-|.+.|...|...++.++++.|++
T Consensus 386 G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~ 421 (638)
T CHL00176 386 GFSGADLANLLNEAAILTARRKKATITMKEIDTAID 421 (638)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 367899999999999999999999999999999864
No 70
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=54.63 E-value=21 Score=30.96 Aligned_cols=90 Identities=20% Similarity=0.139 Sum_probs=53.6
Q ss_pred eeEeecCCCcchhhhHHHHHHHHHhhcCceE-EEeee----hhhhhcCCCcccccCCCCcccccceEee--CCcEEEEec
Q 013415 208 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ-CIPLT----VNYLNTASLAPKKDYQTNRLIPGVLQLA--DGSHLIIDE 280 (443)
Q Consensus 208 sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~-~lplt----l~~LN~~~l~P~kD~~~~~L~sG~LQLa--~gT~lviDE 280 (443)
++-|.|.|+ +-++.|.+.+..+..... .+.++ .+.|-. .+.|. ........|.|--+ +|..++|||
T Consensus 1 ~vlL~G~~G----~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g-~~~~~--~~~~~~~~~~l~~a~~~~~il~lDE 73 (139)
T PF07728_consen 1 PVLLVGPPG----TGKTTLARELAALLGRPVIRINCSSDTTEEDLIG-SYDPS--NGQFEFKDGPLVRAMRKGGILVLDE 73 (139)
T ss_dssp EEEEEESSS----SSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHC-EEET---TTTTCEEE-CCCTTHHEEEEEEESS
T ss_pred CEEEECCCC----CCHHHHHHHHHHHhhcceEEEEecccccccccee-eeeec--ccccccccccccccccceeEEEECC
Confidence 477899998 567888888877776433 34332 222221 11221 12235666666633 799999999
Q ss_pred CCCCcCcccccchhHHHHHHHHHHhCeeeee
Q 013415 281 TQLETGTLNSTGVENARLLKNLMEFQKVEYN 311 (443)
Q Consensus 281 t~L~~G~L~~~Gv~N~~aL~~li~~Q~v~Yd 311 (443)
...- .-.=+.+|..+++...+...
T Consensus 74 in~a-------~~~v~~~L~~ll~~~~~~~~ 97 (139)
T PF07728_consen 74 INRA-------PPEVLESLLSLLEERRIQLP 97 (139)
T ss_dssp CGG---------HHHHHTTHHHHSSSEEEE-
T ss_pred cccC-------CHHHHHHHHHHHhhCccccc
Confidence 8532 22347889999998877643
No 71
>PRK09087 hypothetical protein; Validated
Probab=53.35 E-value=1.9e+02 Score=27.94 Aligned_cols=51 Identities=12% Similarity=0.021 Sum_probs=31.6
Q ss_pred CCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH--HHcCCCCCCHHHHHHHHHH
Q 013415 373 LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMS--ASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 373 ~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllA--lS~G~~~lt~e~W~~a~~L 434 (443)
.+..+++|+.++|-+.+ ++. -+.+..+ +.||.+ +..| ..+|..-++++++-
T Consensus 169 ~~~~l~~ev~~~La~~~------~r~--~~~l~~~--l~~L~~~~~~~~-~~it~~~~~~~l~~ 221 (226)
T PRK09087 169 RQLYVDPHVVYYLVSRM------ERS--LFAAQTI--VDRLDRLALERK-SRITRALAAEVLNE 221 (226)
T ss_pred cCCCCCHHHHHHHHHHh------hhh--HHHHHHH--HHHHHHHHHHhC-CCCCHHHHHHHHHh
Confidence 46889999999985544 221 2333333 244443 3344 56899999988763
No 72
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=52.87 E-value=2.4e+02 Score=28.88 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=36.8
Q ss_pred CcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 375 HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 375 ~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
-.+++++.+.|-+-.- +.. =..+....++.-|-..|...|...++.+++..|..
T Consensus 227 ~~~~~~~l~~i~~~~~--~~~---Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~ 280 (394)
T PRK00411 227 GVVDDEVLDLIADLTA--REH---GDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYE 280 (394)
T ss_pred CCCCHhHHHHHHHHHH--Hhc---CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 3678888888765331 111 12344455666666678889999999999998875
No 73
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=51.71 E-value=2.7e+02 Score=28.12 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=36.0
Q ss_pred CcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 375 HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 375 ~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
-.+++++.++|..- +. |.. . ..+....++..|-.+|...|...+|.+++..|...
T Consensus 219 ~~~~~~~l~~i~~~-~~-~~~-G--d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~ 273 (365)
T TIGR02928 219 GVLDDGVIPLCAAL-AA-QEH-G--DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEK 273 (365)
T ss_pred CCCChhHHHHHHHH-HH-Hhc-C--CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34778877776442 11 111 1 24555556766767788889999999999987643
No 74
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=49.21 E-value=3.4e+02 Score=28.49 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=65.1
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhhcC-----CCcccccCCCC--cccccceEeeCCcE
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNTA-----SLAPKKDYQTN--RLIPGVLQLADGSH 275 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN~~-----~l~P~kD~~~~--~L~sG~LQLa~gT~ 275 (443)
...++-+.|.++ +-+..+...+....++. .++.+....+... -|--.+..-++ .-..|.+..++||.
T Consensus 156 ~~~~vli~Ge~G----tGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (463)
T TIGR01818 156 SDITVLINGESG----TGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGT 231 (463)
T ss_pred cCCeEEEECCCC----CCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCe
Confidence 345677888887 56777888888877753 3343433332211 11101111111 22468899999999
Q ss_pred EEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 276 LIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 276 lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
|+|||.. |... -...|-.+++.+.+.- --..-.+++|+++++.|.
T Consensus 232 l~l~ei~~l~~~--------~q~~ll~~l~~~~~~~--~~~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 232 LFLDEIGDMPLD--------AQTRLLRVLADGEFYR--VGGRTPIKVDVRIVAATH 277 (463)
T ss_pred EEEEchhhCCHH--------HHHHHHHHHhcCcEEE--CCCCceeeeeeEEEEeCC
Confidence 9999986 3322 2556777777665431 112245677888777664
No 75
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=48.97 E-value=5.3 Score=39.03 Aligned_cols=178 Identities=18% Similarity=0.250 Sum_probs=100.7
Q ss_pred EeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCC-CCcccccceEeeCCcEEEEecCC-CCcCc
Q 013415 210 NLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQ-TNRLIPGVLQLADGSHLIIDETQ-LETGT 287 (443)
Q Consensus 210 nl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~-~~~L~sG~LQLa~gT~lviDEt~-L~~G~ 287 (443)
.+.|..+ +-+....+.|...+=+-.++ .|- .+..|+. -+++-.|+.|. |.-+++||.. |+.+.
T Consensus 36 ~~~Gpag----tGKtetik~La~~lG~~~~v------fnc---~~~~~~~~l~ril~G~~~~--GaW~cfdefnrl~~~v 100 (231)
T PF12774_consen 36 ALSGPAG----TGKTETIKDLARALGRFVVV------FNC---SEQMDYQSLSRILKGLAQS--GAWLCFDEFNRLSEEV 100 (231)
T ss_dssp EEESSTT----SSHHHHHHHHHHCTT--EEE------EET---TSSS-HHHHHHHHHHHHHH--T-EEEEETCCCSSHHH
T ss_pred CCcCCCC----CCchhHHHHHHHHhCCeEEE------ecc---cccccHHHHHHHHHHHhhc--CchhhhhhhhhhhHHH
Confidence 3566665 56777777777766665555 221 1123332 24789999994 9999999999 88888
Q ss_pred ccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec----CCCCcccCceeeeeccCCCCCCCCCChhhHHHH
Q 013415 288 LNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE----GKSNIVPADLVIPFQPSSAASFEVVPAETLEAW 363 (443)
Q Consensus 288 L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~----gKS~~lp~D~~vpl~~~~~~~~~~~~~~~L~~~ 363 (443)
|.-.+. .+++|++++..+.-.+.|.-..+.++-+..+.+.-. |++ -+|.++...+||..-. .+++..+
T Consensus 101 LS~i~~-~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~-~LP~nLk~lFRpvam~------~PD~~~I 172 (231)
T PF12774_consen 101 LSVISQ-QIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRS-ELPENLKALFRPVAMM------VPDLSLI 172 (231)
T ss_dssp HHHHHH-HHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC---S-HHHCTTEEEEE--------S--HHHH
T ss_pred HHHHHH-HHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcc-cCCHhHHHHhheeEEe------CCCHHHH
Confidence 877774 699999999998888888877777777776665543 344 6777777666665321 1122222
Q ss_pred HHHHHHhccCCCcCChhHHHHHHHHHHHHhhc--CC---CCCHHHHHHHHHHHH
Q 013415 364 RWYLASVRSLPHSIESDMQKVVESDLVAARQA--DR---SLGGQDLSRLLTMGR 412 (443)
Q Consensus 364 R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~--~~---~it~~~L~~~L~LaR 412 (443)
=.-+-. ...|.=....++.|..-|--+++. .+ ..+-+.+...|.+|-
T Consensus 173 ~ei~L~--s~GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~ 224 (231)
T PF12774_consen 173 AEILLL--SQGFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAG 224 (231)
T ss_dssp HHHHHH--CCCTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHH
T ss_pred HHHHHH--HcCchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHH
Confidence 111111 123444445666666666444442 11 245566666665553
No 76
>CHL00195 ycf46 Ycf46; Provisional
Probab=48.67 E-value=2.2e+02 Score=31.08 Aligned_cols=186 Identities=11% Similarity=0.152 Sum_probs=93.3
Q ss_pred eeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEe---eCCcEEEEecCC-C
Q 013415 208 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQL---ADGSHLIIDETQ-L 283 (443)
Q Consensus 208 sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQL---a~gT~lviDEt~-L 283 (443)
.+.|.|+|| +-++.+.+.+..-.-. .++.+....+-+.. -.++.....-+++. .....|.|||.. +
T Consensus 261 GILL~GPpG----TGKTllAkaiA~e~~~-~~~~l~~~~l~~~~-----vGese~~l~~~f~~A~~~~P~IL~IDEID~~ 330 (489)
T CHL00195 261 GLLLVGIQG----TGKSLTAKAIANDWQL-PLLRLDVGKLFGGI-----VGESESRMRQMIRIAEALSPCILWIDEIDKA 330 (489)
T ss_pred eEEEECCCC----CcHHHHHHHHHHHhCC-CEEEEEhHHhcccc-----cChHHHHHHHHHHHHHhcCCcEEEehhhhhh
Confidence 488999998 5567777777665433 23334444433211 11111112222222 235789999987 2
Q ss_pred Cc--CcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecC-CCCccc--------CceeeeeccCCCCCC
Q 013415 284 ET--GTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEG-KSNIVP--------ADLVIPFQPSSAASF 352 (443)
Q Consensus 284 ~~--G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~g-KS~~lp--------~D~~vpl~~~~~~~~ 352 (443)
-. +.-.+.|..| +.+..++.+-. + .+-+++|+... +-..+| +|..+.+..-
T Consensus 331 ~~~~~~~~d~~~~~-rvl~~lL~~l~---~---------~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP----- 392 (489)
T CHL00195 331 FSNSESKGDSGTTN-RVLATFITWLS---E---------KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLP----- 392 (489)
T ss_pred hccccCCCCchHHH-HHHHHHHHHHh---c---------CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCc-----
Confidence 21 1112334432 33444443311 0 12244443322 211222 4444443211
Q ss_pred CCCChhhHHHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 013415 353 EVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVK 432 (443)
Q Consensus 353 ~~~~~~~L~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~ 432 (443)
..++..+-|+.|+...+... ..+.-.+ .+. +.-...+..|+..++.-|...|...+ ..++.+++..|+
T Consensus 393 --~~~eR~~Il~~~l~~~~~~~--~~~~dl~-----~La--~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~~a~ 460 (489)
T CHL00195 393 --SLEEREKIFKIHLQKFRPKS--WKKYDIK-----KLS--KLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDILLAL 460 (489)
T ss_pred --CHHHHHHHHHHHHhhcCCCc--ccccCHH-----HHH--hhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHHHHH
Confidence 12345678888887754221 1110001 111 11225788999999999988888777 468999998876
Q ss_pred H
Q 013415 433 E 433 (443)
Q Consensus 433 ~ 433 (443)
+
T Consensus 461 ~ 461 (489)
T CHL00195 461 K 461 (489)
T ss_pred H
Confidence 4
No 77
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=47.75 E-value=1.7e+02 Score=29.29 Aligned_cols=134 Identities=16% Similarity=0.135 Sum_probs=77.1
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceE---EEeeehh
Q 013415 169 LLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ---CIPLTVN 245 (443)
Q Consensus 169 Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~---~lpltl~ 245 (443)
...+|..++.||....+||+-.+=.....+ ....++ +-+.|..+ .-++.+.++|+.|+.... .-.+++.
T Consensus 43 ~~~~L~~~~~~d~~~~~~l~~~lg~~L~~~---~~~~~~-~~l~G~g~----nGKStl~~~l~~l~G~~~~~~~~~~~~~ 114 (304)
T TIGR01613 43 WNGFLLETFGGDNELIEYLQRVIGYSLTGN---YTEQKL-FFLYGNGG----NGKSTFQNLLSNLLGDYATTAVASLKMN 114 (304)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhHHhcCC---CCceEE-EEEECCCC----CcHHHHHHHHHHHhChhhccCCcchhhh
Confidence 445888889999877777765543332221 223344 55566543 568889999999998654 2222334
Q ss_pred hhhcCCCcccccCCCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeeccc-ceeeeeccc
Q 013415 246 YLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYY-KMEMIADVQ 324 (443)
Q Consensus 246 ~LN~~~l~P~kD~~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~-~~e~~~di~ 324 (443)
.++..+| +.--|..--.++.||.. .| ...|...|+.++..-.|.....|. .+++.-...
T Consensus 115 ~~~~~~f-------------~~a~l~gk~l~~~~E~~--~~-----~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~ 174 (304)
T TIGR01613 115 EFQEHRF-------------GLARLEGKRAVIGDEVQ--KG-----YRDDESTFKSLTGGDTITARFKNKDPFEFTPKFT 174 (304)
T ss_pred hccCCCc-------------hhhhhcCCEEEEecCCC--CC-----ccccHHhhhhhhcCCeEEeecccCCcEEEEEeeE
Confidence 3332111 11113334456778764 22 233567899999888888777763 445544555
Q ss_pred eEEeec
Q 013415 325 MLILSE 330 (443)
Q Consensus 325 vliLS~ 330 (443)
+++.|-
T Consensus 175 ~i~~tN 180 (304)
T TIGR01613 175 LVQSTN 180 (304)
T ss_pred EEEEcC
Confidence 555554
No 78
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=47.08 E-value=2.3e+02 Score=28.09 Aligned_cols=169 Identities=20% Similarity=0.165 Sum_probs=87.7
Q ss_pred eeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEeeCCcEEEEecCCCCcCc
Q 013415 208 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGT 287 (443)
Q Consensus 208 sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa~gT~lviDEt~L~~G~ 287 (443)
|+-|.|+|| +-+..|..+|++=+-..... .+...+.. . +.|.+=.-+|..|+.|.|||.- .
T Consensus 52 h~lf~GPPG----~GKTTLA~IIA~e~~~~~~~-~sg~~i~k-----~-----~dl~~il~~l~~~~ILFIDEIH----R 112 (233)
T PF05496_consen 52 HMLFYGPPG----LGKTTLARIIANELGVNFKI-TSGPAIEK-----A-----GDLAAILTNLKEGDILFIDEIH----R 112 (233)
T ss_dssp EEEEESSTT----SSHHHHHHHHHHHCT--EEE-EECCC--S-----C-----HHHHHHHHT--TT-EEEECTCC----C
T ss_pred eEEEECCCc----cchhHHHHHHHhccCCCeEe-ccchhhhh-----H-----HHHHHHHHhcCCCcEEEEechh----h
Confidence 789999998 66888888887766654432 22111111 1 1233323356789999999995 2
Q ss_pred ccccchhHHHHHHHHHHhCeeeeee--cccceeeeeccceEEee--cCCCCcccCceeeeeccCCCC--CCCCCChhhHH
Q 013415 288 LNSTGVENARLLKNLMEFQKVEYNF--EYYKMEMIADVQMLILS--EGKSNIVPADLVIPFQPSSAA--SFEVVPAETLE 361 (443)
Q Consensus 288 L~~~Gv~N~~aL~~li~~Q~v~YdF--~y~~~e~~~di~vliLS--~gKS~~lp~D~~vpl~~~~~~--~~~~~~~~~L~ 361 (443)
|+.. --.+|-..|++.++..-- .+..-.+.+++|...|- ..++ .-+.-|+++-..- .++..+.++|.
T Consensus 113 lnk~---~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~----g~ls~pLrdRFgi~~~l~~Y~~~el~ 185 (233)
T PF05496_consen 113 LNKA---QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA----GLLSSPLRDRFGIVLRLEFYSEEELA 185 (233)
T ss_dssp --HH---HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG----CCTSHCCCTTSSEEEE----THHHHH
T ss_pred ccHH---HHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc----cccchhHHhhcceecchhcCCHHHHH
Confidence 2222 267889999998886532 33444455566654444 3355 2222344433211 12344566655
Q ss_pred HHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 013415 362 AWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGR 412 (443)
Q Consensus 362 ~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaR 412 (443)
++-+. .++..+..|+++....| .|++.. |++--.++|+=.|
T Consensus 186 ~Iv~r--~a~~l~i~i~~~~~~~I------a~rsrG--tPRiAnrll~rvr 226 (233)
T PF05496_consen 186 KIVKR--SARILNIEIDEDAAEEI------ARRSRG--TPRIANRLLRRVR 226 (233)
T ss_dssp HHHHH--CCHCTT-EE-HHHHHHH------HHCTTT--SHHHHHHHHHHHC
T ss_pred HHHHH--HHHHhCCCcCHHHHHHH------HHhcCC--ChHHHHHHHHHHH
Confidence 44322 34567899999988888 444433 4666666665443
No 79
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=45.39 E-value=3.1e+02 Score=31.52 Aligned_cols=215 Identities=16% Similarity=0.193 Sum_probs=95.7
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhc
Q 013415 170 LRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNT 249 (443)
Q Consensus 170 l~~La~~l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~ 249 (443)
-..|..-++|...+.+-++=.+-.+- .+. ..-|. ++.|.|.|| +-+..+.+.|...+-+. ++.+.+.++.+
T Consensus 315 ~~~l~~~~~G~~~~k~~i~~~~~~~~-~~~--~~~~~-~lll~GppG----~GKT~lAk~iA~~l~~~-~~~i~~~~~~~ 385 (775)
T TIGR00763 315 KEILDEDHYGLKKVKERILEYLAVQK-LRG--KMKGP-ILCLVGPPG----VGKTSLGKSIAKALNRK-FVRFSLGGVRD 385 (775)
T ss_pred HHHhhhhcCChHHHHHHHHHHHHHHH-hhc--CCCCc-eEEEECCCC----CCHHHHHHHHHHHhcCC-eEEEeCCCccc
Confidence 33445556677777776654333221 111 11233 699999998 56677777776554321 22222222211
Q ss_pred C-CCcc-cccC---CCCcccccceE-eeCCcEEEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeec
Q 013415 250 A-SLAP-KKDY---QTNRLIPGVLQ-LADGSHLIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIAD 322 (443)
Q Consensus 250 ~-~l~P-~kD~---~~~~L~sG~LQ-La~gT~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~d 322 (443)
. .+.- .+.| ..+++..+..+ -..+.+++|||.. +..+ ..| .-..+|-+++...+-. .|.-+.+..++|
T Consensus 386 ~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~---~~~-~~~~aLl~~ld~~~~~-~f~d~~~~~~~d 460 (775)
T TIGR00763 386 EAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSS---FRG-DPASALLEVLDPEQNN-AFSDHYLDVPFD 460 (775)
T ss_pred HHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCc---cCC-CHHHHHHHhcCHHhcC-ccccccCCceec
Confidence 0 0000 0111 12333322222 1245699999998 6543 112 1246777777542111 111111333444
Q ss_pred c-c-eEEeecCCCCcccCceeeeeccCCC-CCCCCCCh-hhHHHHHHHHHHh--c-----cCCCcCChhHHHHHHHHHHH
Q 013415 323 V-Q-MLILSEGKSNIVPADLVIPFQPSSA-ASFEVVPA-ETLEAWRWYLASV--R-----SLPHSIESDMQKVVESDLVA 391 (443)
Q Consensus 323 i-~-vliLS~gKS~~lp~D~~vpl~~~~~-~~~~~~~~-~~L~~~R~Yl~~~--r-----~~~~~i~ee~~~~Iq~dFV~ 391 (443)
. + ++|++.....-+|. ++..-.. -.+..++. +...-++.|+..- + .....+++++.++|-+.|
T Consensus 461 ~s~v~~I~TtN~~~~i~~----~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~-- 534 (775)
T TIGR00763 461 LSKVIFIATANSIDTIPR----PLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYY-- 534 (775)
T ss_pred cCCEEEEEecCCchhCCH----HHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhc--
Confidence 2 2 22333322211221 1111000 01223343 3456677777422 1 113578999888886655
Q ss_pred HhhcCCCCCHHHHHHHH
Q 013415 392 ARQADRSLGGQDLSRLL 408 (443)
Q Consensus 392 ~Rq~~~~it~~~L~~~L 408 (443)
.|. .+.+.|.+.+
T Consensus 535 ~~e----~g~R~l~r~i 547 (775)
T TIGR00763 535 TRE----AGVRNLERQI 547 (775)
T ss_pred Chh----cCChHHHHHH
Confidence 222 3346665544
No 80
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=44.41 E-value=67 Score=34.28 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=71.8
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHh---ccccc----c-cCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceE
Q 013415 167 ESLLRHLTSILGNDGIAAHLMLLHLL---SRVHA----R-IDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ 238 (443)
Q Consensus 167 ~~Ll~~La~~l~GD~laAeyLLL~L~---S~V~~----r-~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~ 238 (443)
..+-.+|...+.|...|.+.+...+. .++.. + .++..+++-++.|.|.|+ +-+..|.+.|+..+...
T Consensus 69 ~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~G----sGKT~lAraLA~~l~~p- 143 (413)
T TIGR00382 69 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTG----SGKTLLAQTLARILNVP- 143 (413)
T ss_pred HHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCC----cCHHHHHHHHHHhcCCC-
Confidence 34666777777889999998877653 22221 1 123456778999999998 45666666666554211
Q ss_pred EEeeehhhhhcCCCcccccCCCCcc------cccceEeeCCcEEEEecCC-CCcC------cccccchhHHHHHHHHHHh
Q 013415 239 CIPLTVNYLNTASLAPKKDYQTNRL------IPGVLQLADGSHLIIDETQ-LETG------TLNSTGVENARLLKNLMEF 305 (443)
Q Consensus 239 ~lpltl~~LN~~~l~P~kD~~~~~L------~sG~LQLa~gT~lviDEt~-L~~G------~L~~~Gv~N~~aL~~li~~ 305 (443)
+.-.....|...-+... | ..+.| ..|.+..+.++.++|||.. +... .-+..|..=.++|-.+++-
T Consensus 144 f~~~da~~L~~~gyvG~-d-~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG 221 (413)
T TIGR00382 144 FAIADATTLTEAGYVGE-D-VENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEG 221 (413)
T ss_pred eEEechhhccccccccc-c-HHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhc
Confidence 11122222221111111 1 00111 1344556678899999998 5531 1122222236678888863
No 81
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=43.57 E-value=65 Score=35.18 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=68.1
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhhc-----CCCcccccCCCC--cccccceEeeCCcE
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNT-----ASLAPKKDYQTN--RLIPGVLQLADGSH 275 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN~-----~~l~P~kD~~~~--~L~sG~LQLa~gT~ 275 (443)
.+.++.|.|-+| +-++.+.+++....++. .++.+.-..+.. .-|-.....-++ .-..|.+..|+||.
T Consensus 226 ~~~pvlI~GE~G----tGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~Gt 301 (520)
T PRK10820 226 LDAPLLITGDTG----TGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGS 301 (520)
T ss_pred CCCCEEEECCCC----ccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCE
Confidence 356799999998 66888888888777764 345554433322 112111111111 23568899999999
Q ss_pred EEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 276 LIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 276 lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
|+|||.. |... =...|-.+++.++. .-.-..-+.++|++++.-|.
T Consensus 302 L~LdeI~~L~~~--------~Q~~Ll~~l~~~~~--~~~g~~~~~~~~vRiI~st~ 347 (520)
T PRK10820 302 VLLDEIGEMSPR--------MQAKLLRFLNDGTF--RRVGEDHEVHVDVRVICATQ 347 (520)
T ss_pred EEEeChhhCCHH--------HHHHHHHHHhcCCc--ccCCCCcceeeeeEEEEecC
Confidence 9999997 4322 23566777776642 11122346778888766554
No 82
>PHA02244 ATPase-like protein
Probab=41.23 E-value=1.4e+02 Score=31.74 Aligned_cols=109 Identities=11% Similarity=0.155 Sum_probs=59.6
Q ss_pred eeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccce--EeeCCcEEEEecCCC
Q 013415 206 KLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVL--QLADGSHLIIDETQL 283 (443)
Q Consensus 206 ~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~L--QLa~gT~lviDEt~L 283 (443)
..++.|.|.|| +-+..|...|...+-+- ++.++ ..+....+.-..+ ..+.++.|.| .+.+|+.|+|||...
T Consensus 119 ~~PVLL~GppG----tGKTtLA~aLA~~lg~p-fv~In-~l~d~~~L~G~i~-~~g~~~dgpLl~A~~~GgvLiLDEId~ 191 (383)
T PHA02244 119 NIPVFLKGGAG----SGKNHIAEQIAEALDLD-FYFMN-AIMDEFELKGFID-ANGKFHETPFYEAFKKGGLFFIDEIDA 191 (383)
T ss_pred CCCEEEECCCC----CCHHHHHHHHHHHhCCC-EEEEe-cChHHHhhccccc-ccccccchHHHHHhhcCCEEEEeCcCc
Confidence 35788999998 55666776666554321 22222 1011111110001 1123343433 157899999999963
Q ss_pred CcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 284 ETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 284 ~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
-.. .-...|+.++..+ .++..-..+..+-+.++++.+.
T Consensus 192 a~p-------~vq~~L~~lLd~r--~l~l~g~~i~~h~~FRlIATsN 229 (383)
T PHA02244 192 SIP-------EALIIINSAIANK--FFDFADERVTAHEDFRVISAGN 229 (383)
T ss_pred CCH-------HHHHHHHHHhccC--eEEecCcEEecCCCEEEEEeeC
Confidence 221 1257888888876 3444444555566777777765
No 83
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=38.89 E-value=2e+02 Score=33.55 Aligned_cols=146 Identities=15% Similarity=0.175 Sum_probs=77.0
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhcc-cccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcC--ceEEEeeeh
Q 013415 168 SLLRHLTSILGNDGIAAHLMLLHLLSR-VHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLP--FTQCIPLTV 244 (443)
Q Consensus 168 ~Ll~~La~~l~GD~laAeyLLL~L~S~-V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P--~s~~lpltl 244 (443)
.|-..|..-+.|-..|-+.+.-++... .-......++| ++.|.|+++ +-+..|.+.|...+= ...++-+..
T Consensus 559 ~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~--~~lf~Gp~G----vGKT~lA~~La~~l~~~~~~~~~~dm 632 (852)
T TIGR03345 559 SLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLG--VFLLVGPSG----VGKTETALALAELLYGGEQNLITINM 632 (852)
T ss_pred HHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCce--EEEEECCCC----CCHHHHHHHHHHHHhCCCcceEEEeH
Confidence 345666666677887877777666432 11122234455 678999998 456666666655541 112222322
Q ss_pred hhhhc----CCC--ccc--ccCCCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeecccc
Q 013415 245 NYLNT----ASL--APK--KDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYK 316 (443)
Q Consensus 245 ~~LN~----~~l--~P~--kD~~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~ 316 (443)
..... ..| .|. -.|..+.+-...++-.+.++++|||.. +. .-.-...|..++....+. |..-..
T Consensus 633 se~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEie----ka---~~~v~~~Llq~ld~g~l~-d~~Gr~ 704 (852)
T TIGR03345 633 SEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVE----KA---HPDVLELFYQVFDKGVME-DGEGRE 704 (852)
T ss_pred HHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechh----hc---CHHHHHHHHHHhhcceee-cCCCcE
Confidence 22211 111 111 122222222333444678999999994 22 222367888999988875 434444
Q ss_pred eeeeeccceEEee
Q 013415 317 MEMIADVQMLILS 329 (443)
Q Consensus 317 ~e~~~di~vliLS 329 (443)
+.|. + .++|++
T Consensus 705 vd~~-n-~iiI~T 715 (852)
T TIGR03345 705 IDFK-N-TVILLT 715 (852)
T ss_pred Eecc-c-cEEEEe
Confidence 4444 3 444444
No 84
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=37.97 E-value=40 Score=36.32 Aligned_cols=139 Identities=17% Similarity=0.251 Sum_probs=86.1
Q ss_pred CcccccceEee-CCcEEEEecCC-CCcC------cccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCC
Q 013415 261 NRLIPGVLQLA-DGSHLIIDETQ-LETG------TLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGK 332 (443)
Q Consensus 261 ~~L~sG~LQLa-~gT~lviDEt~-L~~G------~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gK 332 (443)
..+...+++.+ +.|.+.|||.+ +... -....|| -++|-.+|+--.|.-. | ..++|+-=.-|.|.+=
T Consensus 237 ~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGV--Q~~LLki~EG~~v~~k--~--~~i~T~~ILFI~~GAF 310 (443)
T PRK05201 237 EEIKQEAIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGV--QRDLLPLVEGSTVSTK--Y--GMVKTDHILFIASGAF 310 (443)
T ss_pred HHHHHHHHHHHHcCCEEEEEcchhhcccCCCCCCCCCccch--hcccccccccceeeec--c--eeEECCceeEEecCCc
Confidence 35778888886 89999999998 4321 2333555 7888899998888753 3 4566665555555431
Q ss_pred CCcccCcee------eeeccCCCCCCCCCCh---------hhHHHHHHHHHHhccCC--CcCChhHHHHHHHHHHHHhhc
Q 013415 333 SNIVPADLV------IPFQPSSAASFEVVPA---------ETLEAWRWYLASVRSLP--HSIESDMQKVVESDLVAARQA 395 (443)
Q Consensus 333 S~~lp~D~~------vpl~~~~~~~~~~~~~---------~~L~~~R~Yl~~~r~~~--~~i~ee~~~~Iq~dFV~~Rq~ 395 (443)
...-|.|++ +|+... +++.+. +.=..+++|.+..+..+ ..+++++.+.|-+-=.++=..
T Consensus 311 ~~~kp~DlIPEl~GR~Pi~v~----L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~ 386 (443)
T PRK05201 311 HVSKPSDLIPELQGRFPIRVE----LDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEK 386 (443)
T ss_pred CCCChhhccHHHhCccceEEE----CCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhccc
Confidence 112234432 111100 122222 23357899999888754 467899988886654443233
Q ss_pred CCCCCHHHHHHHHH
Q 013415 396 DRSLGGQDLSRLLT 409 (443)
Q Consensus 396 ~~~it~~~L~~~L~ 409 (443)
.+.+.++-||..|-
T Consensus 387 ~~~iGAR~LrtI~E 400 (443)
T PRK05201 387 TENIGARRLHTVME 400 (443)
T ss_pred ccccchhhHHHHHH
Confidence 35789999998775
No 85
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=37.54 E-value=3.6e+02 Score=28.13 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=34.3
Q ss_pred CCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 373 LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 373 ~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
.+..+++++.++|-+.+ . -+.++|...|.-....|...| ..+|.+.++.++.-
T Consensus 284 ~~~~l~~e~l~~ia~~~------~--~~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~ 336 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNI------R--SNVRELEGALNRLLAYASLTG-KPITLELAKEALKD 336 (405)
T ss_pred cCCCCCHHHHHHHHHhc------C--CCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHH
Confidence 57889999888885443 1 135667766664444454444 55888888777653
No 86
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=35.57 E-value=58 Score=36.02 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=66.5
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCceE--EEeee----hhhhhcC-CCcccccCCCC---cccccceEeeCCc
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ--CIPLT----VNYLNTA-SLAPKKDYQTN---RLIPGVLQLADGS 274 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~--~lplt----l~~LN~~-~l~P~kD~~~~---~L~sG~LQLa~gT 274 (443)
-+.++.|.|-++ +-++.+.+.|.+..||.. ++.+. .++|=.. -|-=.+-.-|| .=.+|.+++|+||
T Consensus 267 tdstVLi~GESG----TGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG 342 (560)
T COG3829 267 TDSTVLILGESG----TGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGG 342 (560)
T ss_pred CCCcEEEecCCC----ccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCC
Confidence 356789999987 789999999999999954 22221 1111111 11111222233 2378999999999
Q ss_pred EEEEecCC-CCcCcccccchhHHHH-HHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 275 HLIIDETQ-LETGTLNSTGVENARL-LKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 275 ~lviDEt~-L~~G~L~~~Gv~N~~a-L~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
.|.+||.. |.-- +|| |-.+++.-++ .==-.+-..++|++++--+.
T Consensus 343 TLFLDEIgempl~---------LQaKLLRVLQEkei--~rvG~t~~~~vDVRIIAATN 389 (560)
T COG3829 343 TLFLDEIGEMPLP---------LQAKLLRVLQEKEI--ERVGGTKPIPVDVRIIAATN 389 (560)
T ss_pred eEEehhhccCCHH---------HHHHHHHHHhhceE--EecCCCCceeeEEEEEeccC
Confidence 99999997 4421 221 2233333322 21134667888998877664
No 87
>PRK14709 hypothetical protein; Provisional
Probab=33.31 E-value=6.6e+02 Score=27.24 Aligned_cols=139 Identities=12% Similarity=0.065 Sum_probs=76.2
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhh
Q 013415 167 ESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNY 246 (443)
Q Consensus 167 ~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~ 246 (443)
.....+|..++.||....+||.-.+-.....+.. -+.-+-+.|.-+ .-++.+..+|..|+... ....+++.
T Consensus 170 P~~~~fL~~~~~gD~e~~~~lq~~lGy~L~g~~~----~q~~~~l~G~G~----NGKSt~~~~i~~llG~~-~~~~~~~~ 240 (469)
T PRK14709 170 PRWLRFLDEATGGDDELIRFLQQWCGYCLTGDTR----EHALVFVFGGGG----NGKSVFLNVLAGILGDY-ATTAAMDT 240 (469)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhhHhhcCCCc----cceEEEEECCCC----CcHHHHHHHHHHHHhhh-cccCCHHH
Confidence 3467899999999999888876654444333222 123345556432 44778888888888752 34455555
Q ss_pred hhcCCCcccccCCCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeeccc-ceeeeeccce
Q 013415 247 LNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYY-KMEMIADVQM 325 (443)
Q Consensus 247 LN~~~l~P~kD~~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~-~~e~~~di~v 325 (443)
+.... .+ +-..++-.|..-..++.+|+. +|. ..|-..|+.+.---.|...|.|. .++|.-..-+
T Consensus 241 ~~~~~----~~----~~~~~lA~L~Gkrlv~~~E~~--~g~-----~~~~~~iK~ltGGD~i~ar~~~k~~f~f~p~~kl 305 (469)
T PRK14709 241 FTASK----HD----RHPTDLAMLRGARLVTASETE--EGR-----AWAEARIKQMTGGDTITARFMRQDFFEFVPQFKL 305 (469)
T ss_pred Hhhcc----cc----CCchhhHhhcCCeEEEeecCC--ccc-----ccCHHHHHhhhCCCcEEeecccCCceEEEeeeEE
Confidence 54321 11 101122223333345567763 331 22566788888777787776653 3344334444
Q ss_pred EEee
Q 013415 326 LILS 329 (443)
Q Consensus 326 liLS 329 (443)
++.+
T Consensus 306 ~~~~ 309 (469)
T PRK14709 306 TIVG 309 (469)
T ss_pred EEEc
Confidence 4433
No 88
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=32.98 E-value=4e+02 Score=30.15 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=30.3
Q ss_pred ccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 371 RSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 371 r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
+.....|++|+.++|-..|- + +.+.|...|.---..|+..+ ..+|.+..+.+++
T Consensus 460 ~~r~l~l~~eVi~yLa~r~~------r--nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~ 513 (617)
T PRK14086 460 VQEQLNAPPEVLEFIASRIS------R--NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLR 513 (617)
T ss_pred HhcCCCCCHHHHHHHHHhcc------C--CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHH
Confidence 33578999999998855541 1 24555554431112333334 4477766666554
No 89
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=32.26 E-value=2.3e+02 Score=22.55 Aligned_cols=52 Identities=13% Similarity=0.324 Sum_probs=32.5
Q ss_pred HHhccC--CCcCChhHHHH---HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 368 ASVRSL--PHSIESDMQKV---VESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 368 ~~~r~~--~~~i~ee~~~~---Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
..++.. ...+++++.+. |-++||+ ..+..|..+|.-+|.++++..|.+..++
T Consensus 7 ~Lv~~iDp~~~ld~~vee~Ll~laddFv~--------------~v~~~ac~lAKhR~s~tle~~Dv~~~Le 63 (68)
T PF03847_consen 7 ELVKQIDPNEKLDPDVEELLLELADDFVD--------------DVVSFACRLAKHRKSSTLEVKDVQLHLE 63 (68)
T ss_dssp HHHHCC-SS----HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 334444 35688877775 6678876 2556677788899999999998877654
No 90
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=30.84 E-value=1.9e+02 Score=22.60 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=36.5
Q ss_pred ccCCC-cCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 013415 371 RSLPH-SIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVK 432 (443)
Q Consensus 371 r~~~~-~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~ 432 (443)
++.+. .|++++.+.+.++. ..-+...+.-|-.++.-.++++|+.+|.+.|+
T Consensus 13 ~~~Gi~ris~~a~~~l~~~~-----------e~rl~~i~~~A~k~~~hakRktlt~~DI~~Al 64 (65)
T smart00803 13 ESLGIGNLSDEAAKLLAEDV-----------EYRIKEIVQEALKFMRHSKRTTLTTSDIDSAL 64 (65)
T ss_pred HHCCCccccHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhCCCeecHHHHHHHh
Confidence 34444 48888877776654 23455566777778888899999999998876
No 91
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=29.83 E-value=1.9e+02 Score=30.14 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=65.7
Q ss_pred eeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhhcCC-----CcccccCCCC--cccccceEeeCCcEE
Q 013415 206 KLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNTAS-----LAPKKDYQTN--RLIPGVLQLADGSHL 276 (443)
Q Consensus 206 ~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN~~~-----l~P~kD~~~~--~L~sG~LQLa~gT~l 276 (443)
..++.+.|.++ +-++.+...+....++. .++.+.-..++... |-=.+..-++ .-..|.+.-++||.|
T Consensus 162 ~~~vli~ge~g----~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl 237 (441)
T PRK10365 162 EATVLIHGDSG----TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 (441)
T ss_pred CCeEEEEecCC----CCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEE
Confidence 35677788776 56777888888777754 34444433332211 1001111111 235789999999999
Q ss_pred EEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 277 IIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 277 viDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
+|||.. |... -...|..+++.+.+.-. -..-..++|+.++..|.
T Consensus 238 ~ldei~~l~~~--------~q~~l~~~l~~~~~~~~--~~~~~~~~~~rii~~t~ 282 (441)
T PRK10365 238 FLDEIGDISPM--------MQVRLLRAIQEREVQRV--GSNQTISVDVRLIAATH 282 (441)
T ss_pred EEeccccCCHH--------HHHHHHHHHccCcEEeC--CCCceeeeceEEEEeCC
Confidence 999986 4432 24566777777764321 22334677888777775
No 92
>PRK13342 recombination factor protein RarA; Reviewed
Probab=28.54 E-value=3.5e+02 Score=28.42 Aligned_cols=21 Identities=10% Similarity=-0.118 Sum_probs=14.8
Q ss_pred eeEeecCCCcchhhhHHHHHHHHHh
Q 013415 208 SLNLTCLSKESVSVFGNQVRLSVQN 232 (443)
Q Consensus 208 sLnl~~~p~~~~~~~~~~L~~~l~~ 232 (443)
++-|.|.|| +-+..|...+..
T Consensus 38 ~ilL~GppG----tGKTtLA~~ia~ 58 (413)
T PRK13342 38 SMILWGPPG----TGKTTLARIIAG 58 (413)
T ss_pred eEEEECCCC----CCHHHHHHHHHH
Confidence 788899998 456666666544
No 93
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=27.22 E-value=5.6e+02 Score=27.48 Aligned_cols=128 Identities=18% Similarity=0.171 Sum_probs=74.4
Q ss_pred EEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCC--cccCceeeeeccCC---C
Q 013415 275 HLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN--IVPADLVIPFQPSS---A 349 (443)
Q Consensus 275 ~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~--~lp~D~~vpl~~~~---~ 349 (443)
+|.|||.-|- .++-+.-|+.+|+.- =.|++|+...|-+ +--+|+.-|---.. +
T Consensus 294 VLFIDEvHmL-------DIE~FsFlnrAlEse---------------~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD 351 (450)
T COG1224 294 VLFIDEVHML-------DIECFSFLNRALESE---------------LAPIIILATNRGMTKIRGTDIESPHGIPLDLLD 351 (450)
T ss_pred eEEEechhhh-------hHHHHHHHHHHhhcc---------------cCcEEEEEcCCceeeecccCCcCCCCCCHhhhh
Confidence 5689999743 344566666666532 1588999987772 33344322221000 0
Q ss_pred CC----CCCCChhhHHHHHHHHHH-hccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 013415 350 AS----FEVVPAETLEAWRWYLAS-VRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLS 424 (443)
Q Consensus 350 ~~----~~~~~~~~L~~~R~Yl~~-~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt 424 (443)
.- ..+.+. +.+|.-|.. |+..+..+++++.+++.+-=++ -+-+=--.+|.-|..+|.-+|...+.
T Consensus 352 RllII~t~py~~---~EireIi~iRa~ee~i~l~~~Ale~L~~ig~e-------tSLRYa~qLL~pa~iiA~~rg~~~V~ 421 (450)
T COG1224 352 RLLIISTRPYSR---EEIREIIRIRAKEEDIELSDDALEYLTDIGEE-------TSLRYAVQLLTPASIIAKRRGSKRVE 421 (450)
T ss_pred heeEEecCCCCH---HHHHHHHHHhhhhhccccCHHHHHHHHhhchh-------hhHHHHHHhccHHHHHHHHhCCCeee
Confidence 00 012222 234433322 2234678888887776442222 11223345788899999999999999
Q ss_pred HHHHHHHHHH
Q 013415 425 LEHWQMVKEL 434 (443)
Q Consensus 425 ~e~W~~a~~L 434 (443)
.+|.++|.+|
T Consensus 422 ~~dVe~a~~l 431 (450)
T COG1224 422 VEDVERAKEL 431 (450)
T ss_pred hhHHHHHHHH
Confidence 9999999887
No 94
>PLN00158 histone H2B; Provisional
Probab=26.99 E-value=3.7e+02 Score=23.86 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhc-cC--CCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 360 LEAWRWYLASVR-SL--PHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 360 L~~~R~Yl~~~r-~~--~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
-+.|..||-.+- +. +..|+..+. .|-+.||+ |-|.++..-|--+|....+.++|-...+-|++|
T Consensus 26 ~esy~~YI~kVLKQVhPd~gIS~kaM-~ImnSfvn----------DiferIA~EAs~La~~nkr~TltsrEIqtAvrL 92 (116)
T PLN00158 26 TETYKIYIYKVLKQVHPDTGISSKAM-SIMNSFIN----------DIFEKIATEAGKLARYNKKPTVTSREIQTAVRL 92 (116)
T ss_pred cccHHHHHHHHHHHhCCCCCccHHHH-HHHHHHHH----------HHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHH
Confidence 467888988774 33 445766544 36778876 889999999999999999999999999988887
No 95
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=26.95 E-value=70 Score=28.80 Aligned_cols=30 Identities=7% Similarity=0.277 Sum_probs=24.2
Q ss_pred CCCCcEE-EEEEcCCCCCcccCcEEEEEEEe
Q 013415 70 RNSLPCL-VKIYDCPESELKLNEVFEFVGVL 99 (443)
Q Consensus 70 ~~~~~cl-VKvYd~~~~~lKlNdvve~vGIL 99 (443)
+...+|| +-|||+.-+.|++||+|.+.|=+
T Consensus 44 aD~TgsI~isvW~e~~~~~~PGDIirLt~Gy 74 (134)
T KOG3416|consen 44 ADETGSINISVWDEEGCLIQPGDIIRLTGGY 74 (134)
T ss_pred ecccceEEEEEecCcCcccCCccEEEecccc
Confidence 3566777 88999877789999999998744
No 96
>PTZ00463 histone H2B; Provisional
Probab=26.03 E-value=3.9e+02 Score=23.73 Aligned_cols=64 Identities=13% Similarity=0.217 Sum_probs=50.6
Q ss_pred HHHHHHHHHHh-ccC--CCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 360 LEAWRWYLASV-RSL--PHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 360 L~~~R~Yl~~~-r~~--~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
-+.|..||-.+ ++. +..|+..+. .|-+.||. |-|+++..-|--+|....+.++|-.+.+-|++|
T Consensus 27 ~esy~~YI~KVLKqVhPd~gIS~kaM-~ImnSfvn----------DifErIA~EAs~La~~nkr~TltsrEIQtAvrL 93 (117)
T PTZ00463 27 YDSYGLYIFKVLKQVHPDTGISRKSM-NIMNSFLV----------DTFEKIATEASRLCKYTRRDTLSSREIQTAIRL 93 (117)
T ss_pred cchHHHHHHHHHHhhCCCCCccHHHH-HHHHHHHH----------HHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhh
Confidence 46788888876 333 456766544 46778876 889999999999999999999999999999887
No 97
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=25.82 E-value=1.5e+02 Score=31.96 Aligned_cols=138 Identities=16% Similarity=0.248 Sum_probs=86.4
Q ss_pred cccccceEe-eCCcEEEEecCC-CCcC------cccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCC
Q 013415 262 RLIPGVLQL-ADGSHLIIDETQ-LETG------TLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS 333 (443)
Q Consensus 262 ~L~sG~LQL-a~gT~lviDEt~-L~~G------~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS 333 (443)
.+..-+++. +..|.++|||.+ +... -....|| -++|-.+|+--+|... | ..++|+-=.-|.+.+=.
T Consensus 236 ~v~~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGV--Q~~LLkilEGt~v~~k--~--~~v~T~~ILFI~~GAF~ 309 (441)
T TIGR00390 236 EIKQEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGV--QRDLLPIVEGSTVNTK--Y--GMVKTDHILFIAAGAFQ 309 (441)
T ss_pred HHHHHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccch--hccccccccCceeeec--c--eeEECCceeEEecCCcC
Confidence 455566676 789999999998 4421 2445555 7889899998888753 3 35666655555554322
Q ss_pred CcccCceeeeeccCCC---C---CCCCCChhh---------HHHHHHHHHHhccCC--CcCChhHHHHHHHHHHHHhhcC
Q 013415 334 NIVPADLVIPFQPSSA---A---SFEVVPAET---------LEAWRWYLASVRSLP--HSIESDMQKVVESDLVAARQAD 396 (443)
Q Consensus 334 ~~lp~D~~vpl~~~~~---~---~~~~~~~~~---------L~~~R~Yl~~~r~~~--~~i~ee~~~~Iq~dFV~~Rq~~ 396 (443)
..-|+|++ |.-. + .+++.+.++ =..+|+|-+..+..+ ..+++++.+.|-+-=.++=+..
T Consensus 310 ~~kp~DlI----PEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~ 385 (441)
T TIGR00390 310 LAKPSDLI----PELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKT 385 (441)
T ss_pred CCChhhcc----HHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccc
Confidence 13356632 2110 0 023333322 257899998888754 5679999888866554443444
Q ss_pred CCCCHHHHHHHHH
Q 013415 397 RSLGGQDLSRLLT 409 (443)
Q Consensus 397 ~~it~~~L~~~L~ 409 (443)
+.+.++-||..|-
T Consensus 386 ~~iGAR~LrtilE 398 (441)
T TIGR00390 386 ENIGARRLHTVLE 398 (441)
T ss_pred cccchhhHHHHHH
Confidence 5789999998775
No 98
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=25.79 E-value=4.9e+02 Score=27.61 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=34.5
Q ss_pred CCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 373 LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 373 ~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
.+..+++++.++|-+.+ .+ +.+.|...|.-.-..|...| ..+|.+.++.++.
T Consensus 296 ~~~~l~~e~l~~ia~~~------~~--~~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~ 347 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNI------TS--NVRELEGALNRLIAYASLTG-KPITLELAKEALK 347 (450)
T ss_pred cCCCCCHHHHHHHHcCc------CC--CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHH
Confidence 47789999988884433 22 35677666664444555555 4588888888876
No 99
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=25.37 E-value=9.3e+02 Score=27.75 Aligned_cols=209 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHhhhcCcHHHHH-HHHHHHhcccccccCceeeeee-eeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcC
Q 013415 173 LTSILGNDGIAAH-LMLLHLLSRVHARIDNVAVGKL-SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTA 250 (443)
Q Consensus 173 La~~l~GD~laAe-yLLL~L~S~V~~r~d~~~lG~~-sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~ 250 (443)
|...++-+.+..+ -.|-.++.. |.+ ++-|.|.|| +-+..|...+..-.. ..++.+....-.-.
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~----------~~~~slLL~GPpG----tGKTTLA~aIA~~~~-~~f~~lna~~~~i~ 91 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKA----------DRVGSLILYGPPG----VGKTTLARIIANHTR-AHFSSLNAVLAGVK 91 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhc----------CCCceEEEECCCC----CCHHHHHHHHHHHhc-CcceeehhhhhhhH
Q ss_pred CCcccccCCCCcccccceEeeCCcEEEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEee
Q 013415 251 SLAPKKDYQTNRLIPGVLQLADGSHLIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILS 329 (443)
Q Consensus 251 ~l~P~kD~~~~~L~sG~LQLa~gT~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS 329 (443)
.+--..+.....+... ..++.|+|||.. |... -..+|-..++...+-+...-.. .....++--++|
T Consensus 92 dir~~i~~a~~~l~~~----~~~~IL~IDEIh~Ln~~--------qQdaLL~~lE~g~IiLI~aTTe-np~~~l~~aL~S 158 (725)
T PRK13341 92 DLRAEVDRAKERLERH----GKRTILFIDEVHRFNKA--------QQDALLPWVENGTITLIGATTE-NPYFEVNKALVS 158 (725)
T ss_pred HHHHHHHHHHHHhhhc----CCceEEEEeChhhCCHH--------HHHHHHHHhcCceEEEEEecCC-ChHhhhhhHhhc
Q ss_pred cCCCCcccCceeeeeccCCCCCCCCCChhhH-HHHHHHHHHhc----cCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHH
Q 013415 330 EGKSNIVPADLVIPFQPSSAASFEVVPAETL-EAWRWYLASVR----SLPHSIESDMQKVVESDLVAARQADRSLGGQDL 404 (443)
Q Consensus 330 ~gKS~~lp~D~~vpl~~~~~~~~~~~~~~~L-~~~R~Yl~~~r----~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L 404 (443)
++.- -.+.+++.+++ ..++.++.... .....|++++.++| .+..+. +.+.+
T Consensus 159 R~~v----------------~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~L------a~~s~G--D~R~l 214 (725)
T PRK13341 159 RSRL----------------FRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHL------VDVANG--DARSL 214 (725)
T ss_pred cccc----------------eecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHH------HHhCCC--CHHHH
Q ss_pred HHHHHHHHHHHHHcCCCC--CCHHHHHHHHH
Q 013415 405 SRLLTMGRLMSASFGETS--LSLEHWQMVKE 433 (443)
Q Consensus 405 ~~~L~LaRllAlS~G~~~--lt~e~W~~a~~ 433 (443)
...|..+-..+...+... +|.+.++.++.
T Consensus 215 ln~Le~a~~~~~~~~~~~i~It~~~~~e~l~ 245 (725)
T PRK13341 215 LNALELAVESTPPDEDGLIDITLAIAEESIQ 245 (725)
T ss_pred HHHHHHHHHhcccCCCCceeccHHHHHHHHH
No 100
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=25.23 E-value=3.5e+02 Score=21.53 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=42.2
Q ss_pred HHHHHHHHh-ccCCC-cCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 362 AWRWYLASV-RSLPH-SIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 362 ~~R~Yl~~~-r~~~~-~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
.+|..++.. +..++ .+.+++.+.+.+=+ .+=+..+..-++-+|...|+++.+.+|+..|+.
T Consensus 7 ll~~~Vaqil~~~Gf~~~~~sale~ltdi~-----------~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~ 69 (77)
T smart00576 7 LLRIAVAQILESAGFDSFQESALETLTDIL-----------QSYIQELGRTAHSYAELAGRTEPNLGDVVLALE 69 (77)
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 456555554 44554 46666655554433 344667888889999999999999999998763
No 101
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=24.77 E-value=94 Score=25.33 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=19.8
Q ss_pred HHHHHHHc-CCCCCCHHHHHHHHHHH
Q 013415 411 GRLMSASF-GETSLSLEHWQMVKELE 435 (443)
Q Consensus 411 aRllAlS~-G~~~lt~e~W~~a~~LE 435 (443)
+-|.|+++ |+...+.++|+.|++-=
T Consensus 19 aeLvALmwiGRGd~~~eew~~a~~~A 44 (75)
T PF12616_consen 19 AELVALMWIGRGDFEAEEWEEAVAEA 44 (75)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 35666666 99999999999998753
No 102
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=24.73 E-value=2.4e+02 Score=21.89 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=41.9
Q ss_pred CcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 375 HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 375 ~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
+.|+.++..+++.-. .+-+..++..|-.+|.-.++.+++.+|-+.|+.+
T Consensus 26 ~ris~~a~~~L~~~~-----------E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~ 74 (75)
T PF00125_consen 26 YRISSEALVALQSVL-----------EYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI 74 (75)
T ss_dssp SEECHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred cccccccchhhhhhh-----------hhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence 688888888876543 5778889999999999999999999999999876
No 103
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=23.57 E-value=5.9e+02 Score=29.81 Aligned_cols=26 Identities=19% Similarity=0.140 Sum_probs=16.5
Q ss_pred CCcEEEEecCC-CCcCcccccchhHHHHHHHHHHh
Q 013415 272 DGSHLIIDETQ-LETGTLNSTGVENARLLKNLMEF 305 (443)
Q Consensus 272 ~gT~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~ 305 (443)
...++||||.. |+.+ -.++|-..|+.
T Consensus 119 r~KVIIIDEah~LT~~--------A~NALLKtLEE 145 (830)
T PRK07003 119 RFKVYMIDEVHMLTNH--------AFNAMLKTLEE 145 (830)
T ss_pred CceEEEEeChhhCCHH--------HHHHHHHHHHh
Confidence 45679999997 4332 24556666665
No 104
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.27 E-value=2.5e+02 Score=32.18 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=34.4
Q ss_pred HHHHHHHHHh-ccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 013415 361 EAWRWYLASV-RSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVK 432 (443)
Q Consensus 361 ~~~R~Yl~~~-r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~ 432 (443)
+.++.||... +..+..|++++.+.| .|.++. +.+++..+|-- + .++|...++.++...++
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~I------a~~A~G--slRdAlnLLDq--a--ia~g~g~It~e~V~~lL 241 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLL------GRAAAG--SMRDALSLLDQ--A--IALGSGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHH------HHHhCC--CHHHHHHHHHH--H--HHhcCCCcCHHHHHHHH
Confidence 4555555543 335788899888877 334333 24555555532 2 23466678887665553
No 105
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=21.66 E-value=1.1e+02 Score=31.83 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhH-HHHHHHHHhhcCceEEEeeeh
Q 013415 166 RESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFG-NQVRLSVQNLLPFTQCIPLTV 244 (443)
Q Consensus 166 R~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~-~~L~~~l~~L~P~s~~lpltl 244 (443)
...|-.-|+..|+|-.+|++-++=.+-|-+++-. +--.+-|-+.|-+| .+..|+ +.|.+.+-..-=+|-|+-+-+
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~---p~KPLvLSfHG~tG-TGKN~Va~iiA~n~~~~Gl~S~~V~~fv 148 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWANPN---PRKPLVLSFHGWTG-TGKNYVAEIIAENLYRGGLRSPFVHHFV 148 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC---CCCCeEEEecCCCC-CchhHHHHHHHHHHHhccccchhHHHhh
Confidence 3456677888999999999999988888765543 34457788899987 233333 333344433333333332222
Q ss_pred hhhhcCCCcccc----cCCC--CcccccceEeeCCcEEEEecCC-CCcCcccccchhHHHHHHHHHH
Q 013415 245 NYLNTASLAPKK----DYQT--NRLIPGVLQLADGSHLIIDETQ-LETGTLNSTGVENARLLKNLME 304 (443)
Q Consensus 245 ~~LN~~~l~P~k----D~~~--~~L~sG~LQLa~gT~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~ 304 (443)
+.++ .|.+ ||.. ..=..|.+|.=..+.+|+||.+ |.+| =+++|+-++.
T Consensus 149 at~h----FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~g--------Lld~lkpfLd 203 (344)
T KOG2170|consen 149 ATLH----FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPG--------LLDVLKPFLD 203 (344)
T ss_pred hhcc----CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHh--------HHHHHhhhhc
Confidence 2211 3432 3322 1345788888899999999998 8877 3677777664
No 106
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=21.55 E-value=4.7e+02 Score=24.95 Aligned_cols=65 Identities=12% Similarity=-0.035 Sum_probs=45.8
Q ss_pred HHHHHHHHHh-cc----CCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 361 EAWRWYLASV-RS----LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 361 ~~~R~Yl~~~-r~----~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
+.++.|+... +. ....+++++.+.| .+..+.. +..+..+...+.+.|...|...++.++++.++.
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i------~~~s~G~--p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAI------HRFSRGI--PRLINILCDRLLLSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHH------HHHcCCc--ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4555565543 11 1346888887777 3444432 466888888888889999999999999999864
No 107
>KOG3440 consensus Ubiquinol cytochrome c reductase, subunit QCR7 [Energy production and conversion]
Probab=20.50 E-value=2.2e+02 Score=25.33 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHH-----------HHHHHHHHHhh
Q 013415 405 SRLLTMGRLMSASFGETSLSLEHWQM-----------VKELERLRRER 441 (443)
Q Consensus 405 ~~~L~LaRllAlS~G~~~lt~e~W~~-----------a~~LE~~R~~R 441 (443)
.|-.++.|++-+|.-+..|-++-|.. ..+.|++|++|
T Consensus 61 ~R~~Ri~RA~~Lsm~h~~LPk~ewtk~eed~~YL~pyL~ev~~ErkER 108 (122)
T KOG3440|consen 61 ARNYRIKRAMDLSMTHEILPKEEWTKYEEDVKYLEPYLAEVEAERKER 108 (122)
T ss_pred HHHHHHHHHHHHhhhcccCCHHHhhcccchhhHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999964 46778889888
No 108
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=20.29 E-value=1.1e+03 Score=28.62 Aligned_cols=75 Identities=11% Similarity=0.055 Sum_probs=41.9
Q ss_pred CCCChhhH-HHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 013415 353 EVVPAETL-EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMV 431 (443)
Q Consensus 353 ~~~~~~~L-~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a 431 (443)
.+.+.++| +-++.-+..+ ...+++++.++|-. +|.... -|.-+.|-+.|..+...+...++.++..+|
T Consensus 934 ~PYTaEQL~dILk~RAe~A---~gVLdDdAIELIAr-kVAq~S-------GDARKALDILRrAgEikegskVT~eHVrkA 1002 (1164)
T PTZ00112 934 SPYKGDEIEKIIKERLENC---KEIIDHTAIQLCAR-KVANVS-------GDIRKALQICRKAFENKRGQKIVPRDITEA 1002 (1164)
T ss_pred CCCCHHHHHHHHHHHHHhC---CCCCCHHHHHHHHH-hhhhcC-------CHHHHHHHHHHHHHhhcCCCccCHHHHHHH
Confidence 34455555 3344444433 34689999888854 332111 233334445554444556668999999988
Q ss_pred H-HHHHHH
Q 013415 432 K-ELERLR 438 (443)
Q Consensus 432 ~-~LE~~R 438 (443)
. ++|..|
T Consensus 1003 leeiE~sr 1010 (1164)
T PTZ00112 1003 TNQLFDSP 1010 (1164)
T ss_pred HHHHHhhh
Confidence 7 444433
Done!