Query 013415
Match_columns 443
No_of_seqs 139 out of 191
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 10:09:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f8t_A Predicted ATPase involv 99.9 5.4E-23 1.9E-27 215.3 18.1 303 68-434 128-482 (506)
2 3f9v_A Minichromosome maintena 99.8 5.6E-19 1.9E-23 190.5 14.9 339 67-436 197-588 (595)
3 3nbx_X ATPase RAVA; AAA+ ATPas 98.2 0.00015 5E-09 76.7 22.5 230 162-429 9-280 (500)
4 2r44_A Uncharacterized protein 98.2 0.00027 9.1E-09 69.3 22.8 230 167-434 19-296 (331)
5 1g8p_A Magnesium-chelatase 38 98.1 9.8E-05 3.4E-09 72.3 16.5 161 262-434 134-321 (350)
6 3k1j_A LON protease, ATP-depen 97.9 8.3E-05 2.9E-09 79.9 13.9 159 262-434 191-374 (604)
7 3syl_A Protein CBBX; photosynt 95.4 0.6 2E-05 44.4 16.9 230 167-429 23-280 (309)
8 1ofh_A ATP-dependent HSL prote 94.9 0.6 2.1E-05 44.0 15.1 245 167-433 7-297 (310)
9 4fcw_A Chaperone protein CLPB; 93.5 0.78 2.7E-05 43.5 12.5 130 167-309 9-149 (311)
10 3pfi_A Holliday junction ATP-d 92.9 2.5 8.5E-05 40.7 15.3 184 208-433 57-252 (338)
11 3h4m_A Proteasome-activating n 91.1 1.9 6.4E-05 40.5 11.7 37 398-434 221-257 (285)
12 3uk6_A RUVB-like 2; hexameric 90.4 3.8 0.00013 39.7 13.6 56 372-434 274-329 (368)
13 2vl6_A SSO MCM N-TER, minichro 88.1 0.4 1.4E-05 46.0 4.5 38 67-104 203-242 (268)
14 1r6b_X CLPA protein; AAA+, N-t 87.7 7.2 0.00025 42.3 14.6 127 169-309 452-587 (758)
15 3pxi_A Negative regulator of g 86.9 1.8 6.1E-05 47.2 9.3 205 171-409 487-718 (758)
16 1hqc_A RUVB; extended AAA-ATPa 86.8 12 0.0004 35.4 14.0 185 207-433 39-236 (324)
17 1ltl_A DNA replication initiat 86.2 0.54 1.8E-05 45.5 4.2 36 68-103 191-228 (279)
18 2qz4_A Paraplegin; AAA+, SPG7, 86.1 4.3 0.00015 37.1 10.3 37 398-434 212-248 (262)
19 1um8_A ATP-dependent CLP prote 84.7 1.7 5.8E-05 42.9 7.1 134 168-309 14-181 (376)
20 3vfd_A Spastin; ATPase, microt 84.0 18 0.00062 35.7 14.4 55 372-433 297-363 (389)
21 1lv7_A FTSH; alpha/beta domain 83.8 12 0.00042 34.3 12.3 36 398-433 215-250 (257)
22 1g41_A Heat shock protein HSLU 80.9 32 0.0011 35.4 15.1 132 272-409 250-401 (444)
23 3co5_A Putative two-component 77.2 1 3.5E-05 38.4 2.1 75 206-306 27-102 (143)
24 3hu3_A Transitional endoplasmi 74.7 13 0.00044 38.7 10.1 186 207-433 239-457 (489)
25 2z4s_A Chromosomal replication 74.2 16 0.00055 37.1 10.6 61 361-433 270-330 (440)
26 1ny5_A Transcriptional regulat 73.6 5.5 0.00019 39.9 6.7 195 205-429 159-381 (387)
27 3eie_A Vacuolar protein sortin 70.5 31 0.0011 33.0 11.2 66 207-282 52-120 (322)
28 2bjv_A PSP operon transcriptio 70.4 9 0.00031 35.4 7.0 110 207-330 30-149 (265)
29 2zan_A Vacuolar protein sortin 68.7 68 0.0023 32.4 13.8 67 207-282 168-237 (444)
30 3pvs_A Replication-associated 68.6 5.7 0.0002 40.8 5.7 174 208-433 52-242 (447)
31 2c9o_A RUVB-like 1; hexameric 68.1 15 0.00051 37.4 8.7 67 361-434 369-436 (456)
32 2qp9_X Vacuolar protein sortin 67.8 94 0.0032 30.3 15.7 66 207-282 85-153 (355)
33 3d8b_A Fidgetin-like protein 1 66.6 48 0.0016 32.3 11.8 54 373-433 267-332 (357)
34 3n70_A Transport activator; si 64.6 6.4 0.00022 33.3 4.3 62 205-282 23-86 (145)
35 1ojl_A Transcriptional regulat 63.0 11 0.00038 36.3 6.2 111 206-330 25-145 (304)
36 1qvr_A CLPB protein; coiled co 62.4 65 0.0022 35.5 13.0 91 208-309 590-690 (854)
37 3dzd_A Transcriptional regulat 61.8 13 0.00044 37.0 6.5 181 205-411 151-357 (368)
38 4b4t_J 26S protease regulatory 60.8 78 0.0027 32.2 12.3 187 209-434 185-388 (405)
39 3bos_A Putative DNA replicatio 58.1 95 0.0032 27.1 16.9 61 361-433 181-241 (242)
40 4b4t_I 26S protease regulatory 57.6 27 0.00091 36.1 8.2 186 209-433 219-421 (437)
41 1sxj_A Activator 1 95 kDa subu 56.7 98 0.0033 31.8 12.5 178 207-433 78-272 (516)
42 3b9p_A CG5977-PA, isoform A; A 56.5 1.1E+02 0.0038 28.2 11.9 52 374-432 206-269 (297)
43 2v1u_A Cell division control p 55.8 67 0.0023 30.5 10.4 73 355-433 201-274 (387)
44 1xwi_A SKD1 protein; VPS4B, AA 55.3 1.5E+02 0.005 28.4 14.7 67 207-282 46-115 (322)
45 4b4t_H 26S protease regulatory 54.8 66 0.0023 33.4 10.6 187 208-433 245-448 (467)
46 4b4t_L 26S protease subunit RP 54.3 45 0.0015 34.2 9.3 187 208-433 217-420 (437)
47 3hws_A ATP-dependent CLP prote 50.6 6.1 0.00021 38.7 2.0 133 169-306 9-157 (363)
48 2dhr_A FTSH; AAA+ protein, hex 47.1 2.4E+02 0.008 29.3 13.5 35 399-433 235-269 (499)
49 4b4t_M 26S protease regulatory 46.5 57 0.0019 33.5 8.5 187 208-433 217-420 (434)
50 3m6a_A ATP-dependent protease 41.8 78 0.0027 33.0 8.9 200 208-432 110-338 (543)
51 2ce7_A Cell division protein F 40.8 2E+02 0.0069 29.6 11.8 36 398-433 219-254 (476)
52 1wwi_A Hypothetical protein TT 38.7 1.3E+02 0.0043 26.5 8.3 62 358-434 80-143 (148)
53 3kw6_A 26S protease regulatory 36.2 50 0.0017 24.9 4.8 38 398-435 36-73 (78)
54 1taf_B TFIID TBP associated fa 33.3 1.4E+02 0.0049 22.8 6.9 53 371-434 17-70 (70)
55 1in4_A RUVB, holliday junction 32.0 1.7E+02 0.0057 28.0 9.0 55 372-434 195-249 (334)
56 3vlf_B 26S protease regulatory 30.5 82 0.0028 24.5 5.3 36 398-433 34-69 (88)
57 1iqp_A RFCS; clamp loader, ext 27.9 1.4E+02 0.0047 27.6 7.4 27 271-305 109-136 (327)
58 2qby_B CDC6 homolog 3, cell di 26.8 4E+02 0.014 25.0 11.6 65 361-433 204-268 (384)
59 4gop_B Putative uncharacterize 26.5 74 0.0025 26.8 4.7 31 71-101 61-99 (136)
60 2krk_A 26S protease regulatory 25.7 92 0.0031 24.2 4.8 36 398-433 44-79 (86)
61 2dzn_B 26S protease regulatory 25.3 97 0.0033 23.6 4.8 36 398-433 31-66 (82)
62 1ji8_A Dissimilatory siroheme- 24.5 68 0.0023 26.9 3.9 26 409-434 33-59 (111)
63 3or1_C Sulfite reductase GAMA; 22.9 54 0.0018 27.2 3.0 26 409-434 28-53 (105)
64 1r4v_A Hypothetical protein AQ 22.2 90 0.0031 28.1 4.4 28 407-434 139-166 (171)
65 3aji_B S6C, proteasome (prosom 21.7 90 0.0031 23.6 3.9 36 398-433 34-69 (83)
66 3t15_A Ribulose bisphosphate c 20.9 1.2E+02 0.004 28.6 5.4 67 206-282 36-109 (293)
No 1
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.90 E-value=5.4e-23 Score=215.26 Aligned_cols=303 Identities=17% Similarity=0.155 Sum_probs=223.2
Q ss_pred CCCCCCcEEEEEE--cCCCC------CcccCcEEEEEEEeecCcccccccCCCCCCccccchhhhccCCCCCcceEeEEE
Q 013415 68 AERNSLPCLVKIY--DCPES------ELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLI 139 (443)
Q Consensus 68 ~P~~~~~clVKvY--d~~~~------~lKlNdvve~vGILs~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlH~i~ 139 (443)
+|.+..|..+.|+ |+..+ .+|+||.|+++||+... .|+|.+
T Consensus 128 ~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~~-------------------------------~l~a~~ 176 (506)
T 3f8t_A 128 VRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSA-------------------------------TLDALE 176 (506)
T ss_dssp EEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEETT-------------------------------EEEEEE
T ss_pred CCCCCCCceEEEEecccccCcccccccccCCCEEEEEEEEEEe-------------------------------EEEEEE
Confidence 6788888875555 66667 89999999999998542 234443
Q ss_pred EEeecCCCcCCCCCCCCCCcchhH--------HHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeeeeeeeEe
Q 013415 140 HRKLDVNDFLHSSPMMEPKPQLVK--------ETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNL 211 (443)
Q Consensus 140 ~~~l~~~~~~~~~~~~~~~~~~~~--------~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl 211 (443)
.++-.. +-.. .......+ ++.+.|...|++ +.|...++..|+|.|++++.. ..|++++.|
T Consensus 177 i~~~~~--~~~~----~~t~ed~~~i~~l~~~~~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k-----~rgdihVLL 244 (506)
T 3f8t_A 177 VHKKDP--IPEV----HPDPAELEEFRELADKDPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGK-----NSERLHVLL 244 (506)
T ss_dssp EEEECS--SCCC----CCCHHHHHHHHHHHHSCHHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS-----GGGCCCEEE
T ss_pred EEEcCc--cccC----CCCHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc-----cCCceeEEE
Confidence 333111 1000 00111111 346789999999 999999999999999999754 679999999
Q ss_pred ecCCCcchhhhHHHHHHHH-HhhcCceEEEeee---hhhhhcCCCcccccCCCC-cccccceEeeCCcEEEEecCCCCcC
Q 013415 212 TCLSKESVSVFGNQVRLSV-QNLLPFTQCIPLT---VNYLNTASLAPKKDYQTN-RLIPGVLQLADGSHLIIDETQLETG 286 (443)
Q Consensus 212 ~~~p~~~~~~~~~~L~~~l-~~L~P~s~~lplt---l~~LN~~~l~P~kD~~~~-~L~sG~LQLa~gT~lviDEt~L~~G 286 (443)
.|.|+ + +++|.+++ ..++|+..|.+.. ..+|+.. .++. +| .+++|.+.||+||.|++||..
T Consensus 245 ~G~PG----t-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s----~r~~-tG~~~~~G~l~LAdgGvl~lDEIn---- 310 (506)
T 3f8t_A 245 AGYPV----V-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV----LKED-RGWALRAGAAVLADGGILAVDHLE---- 310 (506)
T ss_dssp ESCHH----H-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE----EEES-SSEEEEECHHHHTTTSEEEEECCT----
T ss_pred ECCCC----h-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE----EEcC-CCcccCCCeeEEcCCCeeehHhhh----
Confidence 99997 8 99999999 9999999998763 2345543 3443 44 789999999999999999995
Q ss_pred cccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCC----------ccc------CceeeeeccCCCC
Q 013415 287 TLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN----------IVP------ADLVIPFQPSSAA 350 (443)
Q Consensus 287 ~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~----------~lp------~D~~vpl~~~~~~ 350 (443)
+..-+-..+|.++|++|+|... . +.+|++..++.-..-... -+| ||+.+.+.+..+.
T Consensus 311 ---~~~~~~qsaLlEaMEe~~VtI~-G---~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~ 383 (506)
T 3f8t_A 311 ---GAPEPHRWALMEAMDKGTVTVD-G---IALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRP 383 (506)
T ss_dssp ---TCCHHHHHHHHHHHHHSEEEET-T---EEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC----
T ss_pred ---hCCHHHHHHHHHHHhCCcEEEC-C---EEcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCCh
Confidence 4445568999999999999877 2 266666655554432110 111 6777766544322
Q ss_pred CC--CCC-ChhhHHHHHHHHHHhc--cCCCcCChhHHHHHHHHHHHHhhcC----------CCCCHHHHHHHHHHHHHHH
Q 013415 351 SF--EVV-PAETLEAWRWYLASVR--SLPHSIESDMQKVVESDLVAARQAD----------RSLGGQDLSRLLTMGRLMS 415 (443)
Q Consensus 351 ~~--~~~-~~~~L~~~R~Yl~~~r--~~~~~i~ee~~~~Iq~dFV~~Rq~~----------~~it~~~L~~~L~LaRllA 415 (443)
.. +.. .....+.+|+|+.+|| ...+.+++++.++|.+.|+++|+.. -.+|.+.+..|+++|+++|
T Consensus 384 e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A 463 (506)
T 3f8t_A 384 GEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHA 463 (506)
T ss_dssp ----------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred hHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHH
Confidence 21 111 1123578999999999 4589999999999999999999841 1589999999999999999
Q ss_pred HHcCCCCCCHHHHHHHHHH
Q 013415 416 ASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 416 lS~G~~~lt~e~W~~a~~L 434 (443)
+.+|++.++.||.+.|++|
T Consensus 464 ~L~gR~~V~~eDV~~Ai~L 482 (506)
T 3f8t_A 464 RMRLSDDVEPEDVDIAAEL 482 (506)
T ss_dssp HHTTCSEECHHHHHHHHHH
T ss_pred HHcCcCCCCHHHHHHHHHH
Confidence 9999999999999999988
No 2
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.79 E-value=5.6e-19 Score=190.51 Aligned_cols=339 Identities=16% Similarity=0.139 Sum_probs=231.9
Q ss_pred cCCCCCCcEE--EEEEcCCCCCcccCcEEEEEEEeecCcccccccCCCCCCccccchhhhccCCCCCcceEeEEEEEeec
Q 013415 67 NAERNSLPCL--VKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLD 144 (443)
Q Consensus 67 n~P~~~~~cl--VKvYd~~~~~lKlNdvve~vGILs~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlH~i~~~~l~ 144 (443)
++|.+.+|.- |.++|+..+.+|+||.|.|+||+...|........ . +-+-..+.+...+...
T Consensus 197 ~~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~~~~~~~--~--------------~~~~~~i~a~~i~~~~ 260 (595)
T 3f9v_A 197 EVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGS--R--------------AVFDIYMKVSSIEVSQ 260 (595)
T ss_dssp TSCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSSTTSCTT--C--------------CCCCCCCEEEEEEECC
T ss_pred cCCCCCCCceEEEEEecccccccccCCEEEEEEEEEecccccccCCC--c--------------ceEEEEEEEEeecccc
Confidence 3677777765 66667777899999999999999887643211100 0 0012223333333332
Q ss_pred CC-CcCCCCCCCCC---CcchhHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhccccc-ccCceeeeeeeeEeecCCCcch
Q 013415 145 VN-DFLHSSPMMEP---KPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHA-RIDNVAVGKLSLNLTCLSKESV 219 (443)
Q Consensus 145 ~~-~~~~~~~~~~~---~~~~~~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~-r~d~~~lG~~sLnl~~~p~~~~ 219 (443)
.. .-...++.... .......+.+.|...|++.+.|...+...+++.|++++.. ..+....|+.++.|.|.||
T Consensus 261 ~~~~~~~~t~~~~~~i~~~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppG--- 337 (595)
T 3f9v_A 261 KVLDEVIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPG--- 337 (595)
T ss_dssp CCCCCCCCTTSTHHHHHTTSSTTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSC---
T ss_pred cccccCCCCHHHHHHHHHHhhCcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCc---
Confidence 11 00000000000 0001123467788999999999999999999999998644 2335666999999999998
Q ss_pred hhhHHHHHHHHHhhcCceEEEee---ehhhhhcCCCcccccCCCC--cccccceEeeCCcEEEEecCC-CCcCcccccch
Q 013415 220 SVFGNQVRLSVQNLLPFTQCIPL---TVNYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDETQ-LETGTLNSTGV 293 (443)
Q Consensus 220 ~~~~~~L~~~l~~L~P~s~~lpl---tl~~LN~~~l~P~kD~~~~--~L~sG~LQLa~gT~lviDEt~-L~~G~L~~~Gv 293 (443)
+.+++|.+++...+|+..|... +..+|.... .++..++ .+.+|.+.+|+||.++|||.. |. -
T Consensus 338 -tGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~---~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~--------~ 405 (595)
T 3f9v_A 338 -TAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAV---VREKGTGEYYLEAGALVLADGGIAVIDEIDKMR--------D 405 (595)
T ss_dssp -CTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEEC---SSGGGTSSCSEEECHHHHHSSSEECCTTTTCCC--------S
T ss_pred -hHHHHHHHHHHHhCCCceecCCCcccccccccee---eeccccccccccCCeeEecCCCcEEeehhhhCC--------H
Confidence 7899999999999999987642 233333222 2232233 688999999999999999996 33 2
Q ss_pred hHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCC-------------Ccc-----cCceeeeeccCCCC-C---
Q 013415 294 ENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS-------------NIV-----PADLVIPFQPSSAA-S--- 351 (443)
Q Consensus 294 ~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS-------------~~l-----p~D~~vpl~~~~~~-~--- 351 (443)
.-..+|.++|++|++...-......++.++.++..+.-.. .+- -+|+.+.+.+..+. +
T Consensus 406 ~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i 485 (595)
T 3f9v_A 406 EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDREL 485 (595)
T ss_dssp HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHH
T ss_pred hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHH
Confidence 3578999999999998765555666777766666664221 011 16665555433211 0
Q ss_pred ------CCC---C-ChhhHHHHHHHHHHhccC-CCcCChhHHHHHHHHHHHHhhcCC-------CCCHHHHHHHHHHHHH
Q 013415 352 ------FEV---V-PAETLEAWRWYLASVRSL-PHSIESDMQKVVESDLVAARQADR-------SLGGQDLSRLLTMGRL 413 (443)
Q Consensus 352 ------~~~---~-~~~~L~~~R~Yl~~~r~~-~~~i~ee~~~~Iq~dFV~~Rq~~~-------~it~~~L~~~L~LaRl 413 (443)
... . ..-..+.+|+|+.+||.. .+.+++++.+.|.+.|+++|+... .+|.+.|..++++|++
T Consensus 486 ~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a 565 (595)
T 3f9v_A 486 ANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEA 565 (595)
T ss_dssp HHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHH
Confidence 000 0 011225789999999964 789999999999999999998642 5899999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHH
Q 013415 414 MSASFGETSLSLEHWQMVKELER 436 (443)
Q Consensus 414 lAlS~G~~~lt~e~W~~a~~LE~ 436 (443)
+|+.+|++.++.+|...|++|=.
T Consensus 566 ~A~l~~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 566 YAKMALKAEVTREDAERAINIMR 588 (595)
T ss_dssp HHHTTSSCCSSHHHHHHHHHHHH
T ss_pred HHHHhCcCCCCHHHHHHHHHHHH
Confidence 99999999999999999998743
No 3
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.21 E-value=0.00015 Score=76.74 Aligned_cols=230 Identities=11% Similarity=0.054 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEE-
Q 013415 162 VKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCI- 240 (443)
Q Consensus 162 ~~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~l- 240 (443)
.....+.+...|++.+.|..-+.+.+++.+.++ -++.|.|.|| +.++.|.+.|...++...++
T Consensus 9 ~~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~------------~~VLL~GpPG----tGKT~LAraLa~~l~~~~~f~ 72 (500)
T 3nbx_X 9 LAERISRLSSSLEKGLYERSHAIRLCLLAALSG------------ESVFLLGPPG----IAKSLIARRLKFAFQNARAFE 72 (500)
T ss_dssp HHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT------------CEEEEECCSS----SSHHHHHHHGGGGBSSCCEEE
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC------------CeeEeecCch----HHHHHHHHHHHHHHhhhhHHH
Confidence 445578889999999999999999999988875 2799999998 77999999999988663322
Q ss_pred --ee---ehhhhhcCCCcccccCCCCcccccceE-e-----eCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeee
Q 013415 241 --PL---TVNYLNTASLAPKKDYQTNRLIPGVLQ-L-----ADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVE 309 (443)
Q Consensus 241 --pl---tl~~LN~~~l~P~kD~~~~~L~sG~LQ-L-----a~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~ 309 (443)
.. |.+.|-... +.. .....|.+. . +.++.|+|||.. ..+-+-..+|.++|+.+.+.
T Consensus 73 ~~~~~~~t~~dL~G~~-----~~~-~~~~~g~~~~~~~g~l~~~~IL~IDEI~-------r~~~~~q~~LL~~lee~~v~ 139 (500)
T 3nbx_X 73 YLMTRFSTPEEVFGPL-----SIQ-ALKDEGRYERLTSGYLPEAEIVFLDEIW-------KAGPAILNTLLTAINERQFR 139 (500)
T ss_dssp EECCTTCCHHHHHCCB-----C-----------CBCCTTSGGGCSEEEEESGG-------GCCHHHHHHHHHHHHSSEEE
T ss_pred HHHHhcCCHHHhcCcc-----cHH-HHhhchhHHhhhccCCCcceeeeHHhHh-------hhcHHHHHHHHHHHHHHhcc
Confidence 11 222222110 000 011233333 2 234479999994 22334577899999999887
Q ss_pred eeecccceeeeeccceEEeecCCC--------Cc-ccCceeeeeccCCCC-C--------C----C------CCChhhHH
Q 013415 310 YNFEYYKMEMIADVQMLILSEGKS--------NI-VPADLVIPFQPSSAA-S--------F----E------VVPAETLE 361 (443)
Q Consensus 310 YdF~y~~~e~~~di~vliLS~gKS--------~~-lp~D~~vpl~~~~~~-~--------~----~------~~~~~~L~ 361 (443)
.+ ....+.+.+++|++...- .+ --+++.+.+.+-... . . . ..+.+++.
T Consensus 140 i~----G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~ 215 (500)
T 3nbx_X 140 NG----AHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYE 215 (500)
T ss_dssp CS----SSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHH
T ss_pred CC----CCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHH
Confidence 53 223445556656555321 00 013444444322210 0 0 0 01234455
Q ss_pred HHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 013415 362 AWRWYLASVRSLPHSIESDMQKVVESDLVAARQAD--RSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQ 429 (443)
Q Consensus 362 ~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~--~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~ 429 (443)
.+|.++. ...+++++.++|.+-.-..|... ..++.+.+..++++||++|...|++.++.+|..
T Consensus 216 ~~~~~~~-----~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 216 RWQKEIG-----EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHT-----TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHhcCC-----cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 5554442 36788999888877665444433 358999999999999999999999999999876
No 4
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.20 E-value=0.00027 Score=69.29 Aligned_cols=230 Identities=11% Similarity=0.085 Sum_probs=139.8
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCce-EEEeeeh-
Q 013415 167 ESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT-QCIPLTV- 244 (443)
Q Consensus 167 ~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s-~~lpltl- 244 (443)
+++...+...+.|..-+.+.++..+.++ -++.|.|.|| +-++.|.+.+...++.. .++..+.
T Consensus 19 ~~~~~~~~~~i~g~~~~~~~l~~~l~~~------------~~vll~G~pG----tGKT~la~~la~~~~~~~~~i~~~~~ 82 (331)
T 2r44_A 19 KEVIDEVGKVVVGQKYMINRLLIGICTG------------GHILLEGVPG----LAKTLSVNTLAKTMDLDFHRIQFTPD 82 (331)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHHHT------------CCEEEESCCC----HHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred HHHHHHhccceeCcHHHHHHHHHHHHcC------------CeEEEECCCC----CcHHHHHHHHHHHhCCCeEEEecCCC
Confidence 4455555666778888899998888763 2789999998 77888888888777654 2333321
Q ss_pred ---hhhhcCCCcccccCCCC--cccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeecccceee
Q 013415 245 ---NYLNTASLAPKKDYQTN--RLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEM 319 (443)
Q Consensus 245 ---~~LN~~~l~P~kD~~~~--~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~ 319 (443)
+.+.... ..+...+ .+..|.+ .++.++|||...- .-+-..+|.++|+.+.+..+ ...+..
T Consensus 83 ~~~~~l~g~~---~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~-------~~~~~~~Ll~~l~~~~~~~~--g~~~~~ 147 (331)
T 2r44_A 83 LLPSDLIGTM---IYNQHKGNFEVKKGPV---FSNFILADEVNRS-------PAKVQSALLECMQEKQVTIG--DTTYPL 147 (331)
T ss_dssp CCHHHHHEEE---EEETTTTEEEEEECTT---CSSEEEEETGGGS-------CHHHHHHHHHHHHHSEEEET--TEEEEC
T ss_pred CChhhcCCce---eecCCCCceEeccCcc---cccEEEEEccccC-------CHHHHHHHHHHHhcCceeeC--CEEEEC
Confidence 1121111 0011111 2333444 2589999998632 22346789999999877653 223333
Q ss_pred eeccceEEeecCCC-C-----ccc------CceeeeeccCCCCC----------------CC-CCChhhHHHHHHHHHHh
Q 013415 320 IADVQMLILSEGKS-N-----IVP------ADLVIPFQPSSAAS----------------FE-VVPAETLEAWRWYLASV 370 (443)
Q Consensus 320 ~~di~vliLS~gKS-~-----~lp------~D~~vpl~~~~~~~----------------~~-~~~~~~L~~~R~Yl~~~ 370 (443)
+. +++++..... . -++ |++.+.+.+-.... .. ..+..++..+|.+.
T Consensus 148 ~~--~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~--- 222 (331)
T 2r44_A 148 DN--PFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEI--- 222 (331)
T ss_dssp CS--SCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHH---
T ss_pred CC--CEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHh---
Confidence 43 3333332110 0 011 33334333211000 00 01223333344332
Q ss_pred ccCCCcCChhHHHHHHHHHHHHhhcCC------------CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 371 RSLPHSIESDMQKVVESDLVAARQADR------------SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 371 r~~~~~i~ee~~~~Iq~dFV~~Rq~~~------------~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
.+..+++++.++|.+-+...|.... .++.+.+..++++|+++|...|++.++.++...|+..
T Consensus 223 --~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 223 --NKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp --HTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred --ccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 2567999999999988878887542 4689999999999999999999999999999998765
No 5
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.07 E-value=9.8e-05 Score=72.27 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=104.6
Q ss_pred cccccceEeeCCcEEEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCC-Cccc--
Q 013415 262 RLIPGVLQLADGSHLIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS-NIVP-- 337 (443)
Q Consensus 262 ~L~sG~LQLa~gT~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS-~~lp-- 337 (443)
.+..|.+..++++.|+|||.. |.. .-..+|..+++.+.+.+.-.......+.++.++..+.-.. .+.|
T Consensus 134 ~~~~g~~~~a~~~vl~iDEi~~l~~--------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L 205 (350)
T 1g8p_A 134 AFEPGLLARANRGYLYIDECNLLED--------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQL 205 (350)
T ss_dssp GEECCHHHHHTTEEEEETTGGGSCH--------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHH
T ss_pred eecCceeeecCCCEEEEeChhhCCH--------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHH
Confidence 456788888999999999996 322 2356899999998877665555556666665555544211 1221
Q ss_pred ---CceeeeeccCCCCC-----CCCC-----C--------hhhHHHHHHHHHHhcc--CCCcCChhHHHHHHHHHHHHhh
Q 013415 338 ---ADLVIPFQPSSAAS-----FEVV-----P--------AETLEAWRWYLASVRS--LPHSIESDMQKVVESDLVAARQ 394 (443)
Q Consensus 338 ---~D~~vpl~~~~~~~-----~~~~-----~--------~~~L~~~R~Yl~~~r~--~~~~i~ee~~~~Iq~dFV~~Rq 394 (443)
+++.+.+.+-.... +... . ..+-..++.+|..+|. ..+.+++++.++|.+.+-..|.
T Consensus 206 ~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~ 285 (350)
T 1g8p_A 206 LDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS 285 (350)
T ss_dssp HTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS
T ss_pred HhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC
Confidence 44445444332110 0000 0 0011234567766654 3568999999988765533221
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 395 ADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 395 ~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
-+.+.+..++..|+++|...|+..++.++...|..+
T Consensus 286 ----~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 286 ----DGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp ----CSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred ----CCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 157999999999999999999999999999998876
No 6
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.92 E-value=8.3e-05 Score=79.88 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=106.6
Q ss_pred cccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeec--------ccceeeeeccceEEeecCC-
Q 013415 262 RLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFE--------YYKMEMIADVQMLILSEGK- 332 (443)
Q Consensus 262 ~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~--------y~~~e~~~di~vliLS~gK- 332 (443)
++..|.+..++|+.|+|||... |+ ..-..+|..+|+.+++...-. .....+|+|+.++..+...
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~~----l~---~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~ 263 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIAT----LS---LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDT 263 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGGG----SC---HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHH
T ss_pred cccCceeeecCCCEEEEechhh----CC---HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHH
Confidence 4688999999999999999862 21 224679999999999876521 1144677888777666532
Q ss_pred -CCccc-----Cc---eeeeeccCCCCCCCCCChhhHHHHHHHHHH-hcc--CCCcCChhHHHHHHHHHHHHhhcC-C--
Q 013415 333 -SNIVP-----AD---LVIPFQPSSAASFEVVPAETLEAWRWYLAS-VRS--LPHSIESDMQKVVESDLVAARQAD-R-- 397 (443)
Q Consensus 333 -S~~lp-----~D---~~vpl~~~~~~~~~~~~~~~L~~~R~Yl~~-~r~--~~~~i~ee~~~~Iq~dFV~~Rq~~-~-- 397 (443)
..+.| ++ +.+++++... -.++.+..|-.|+.. ++. ....+++++.+.|.+.+. |... +
T Consensus 264 ~~~l~~~l~~R~~v~~i~i~l~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~--r~~g~r~~ 336 (604)
T 3k1j_A 264 VDKMHPALRSRIRGYGYEVYMRTTMP-----DTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQ--KRAGRKGH 336 (604)
T ss_dssp HHHSCHHHHHHHHHHSEEEECCSEEE-----CCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHH--HTTCSTTE
T ss_pred HhhcCHHHHHHhhccceEeecccccc-----CCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHh--hhhccccc
Confidence 11222 22 3344432211 123334444444443 221 346899999998888773 4333 2
Q ss_pred -CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 398 -SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 398 -~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
+++.+++..+++.|+.+|...|...++.++.+.|.+.
T Consensus 337 l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 337 LTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp EECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 3689999999999999999999999999999999864
No 7
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.44 E-value=0.6 Score=44.40 Aligned_cols=230 Identities=18% Similarity=0.174 Sum_probs=119.3
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHH----HhcccccccCc-eeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcC------
Q 013415 167 ESLLRHLTSILGNDGIAAHLMLLH----LLSRVHARIDN-VAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLP------ 235 (443)
Q Consensus 167 ~~Ll~~La~~l~GD~laAeyLLL~----L~S~V~~r~d~-~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P------ 235 (443)
+++...|..-+.|..-+.+.|.-. .+...+.+.+- ...+..++-|.|.|| +-+..+...+...+.
T Consensus 23 ~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~G----tGKT~la~~la~~l~~~~~~~ 98 (309)
T 3syl_A 23 KEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPG----TGKTTVALKMAGLLHRLGYVR 98 (309)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTT----SSHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCC----CCHHHHHHHHHHHHHhcCCcC
Confidence 456666766677887777766421 12222222111 123456899999998 345555544443331
Q ss_pred ceEEEeeehhhhhcCCCcccccCCCCcccccceEeeCCcEEEEecCC-CCcC-cccccchhHHHHHHHHHHhCeeeeeec
Q 013415 236 FTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQ-LETG-TLNSTGVENARLLKNLMEFQKVEYNFE 313 (443)
Q Consensus 236 ~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa~gT~lviDEt~-L~~G-~L~~~Gv~N~~aL~~li~~Q~v~YdF~ 313 (443)
...++.++...+....+. .+..-..+.+..+.++.|+|||.. |... +=+..+.+-+..|..+|+...
T Consensus 99 ~~~~~~~~~~~l~~~~~g-----~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~------ 167 (309)
T 3syl_A 99 KGHLVSVTRDDLVGQYIG-----HTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR------ 167 (309)
T ss_dssp SCCEEEECGGGTCCSSTT-----CHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT------
T ss_pred CCcEEEEcHHHhhhhccc-----ccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC------
Confidence 223444454444322111 011123566667789999999997 4211 101223344677778887542
Q ss_pred ccceeeeeccceEEeecCCC--Ccc---c-----CceeeeeccCCCCCCCCCChhh-HHHHHHHHHHhccCCCcCChhHH
Q 013415 314 YYKMEMIADVQMLILSEGKS--NIV---P-----ADLVIPFQPSSAASFEVVPAET-LEAWRWYLASVRSLPHSIESDMQ 382 (443)
Q Consensus 314 y~~~e~~~di~vliLS~gKS--~~l---p-----~D~~vpl~~~~~~~~~~~~~~~-L~~~R~Yl~~~r~~~~~i~ee~~ 382 (443)
.++.++..+.... .++ | ++..+.+. +++.++ ...++.|+.. ....+++++.
T Consensus 168 -------~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~--------~~~~~~~~~il~~~l~~---~~~~~~~~~~ 229 (309)
T 3syl_A 168 -------DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFP--------DYSDEELFEIAGHMLDD---QNYQMTPEAE 229 (309)
T ss_dssp -------TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEEC--------CCCHHHHHHHHHHHHHH---TTCEECHHHH
T ss_pred -------CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcC--------CcCHHHHHHHHHHHHHH---cCCCCCHHHH
Confidence 2333333332111 010 1 23333332 223333 3455655544 4678999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHc----CCCCCCHHHHH
Q 013415 383 KVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASF----GETSLSLEHWQ 429 (443)
Q Consensus 383 ~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~----G~~~lt~e~W~ 429 (443)
+.+.+.+-..+.....-+.+++..++.-+.+.+..+ +...++.+++.
T Consensus 230 ~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 230 TALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 999887766655555555788888887666544333 34555555543
No 8
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.93 E-value=0.6 Score=44.04 Aligned_cols=245 Identities=14% Similarity=0.164 Sum_probs=124.0
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhcccccccC---ce--eeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEe
Q 013415 167 ESLLRHLTSILGNDGIAAHLMLLHLLSRVHARID---NV--AVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIP 241 (443)
Q Consensus 167 ~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~d---~~--~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lp 241 (443)
+.+...|...+.|..-+.+.+...+... +.+.. +. ....-++.|.|.|| +-+..+.+.+...+.. .++.
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~vll~G~~G----tGKT~la~~la~~l~~-~~~~ 80 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNR-WRRMQLQEPLRHEVTPKNILMIGPTG----VGKTEIARRLAKLANA-PFIK 80 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHH-HHTTSSCHHHHHHCCCCCEEEECCTT----SSHHHHHHHHHHHHTC-CEEE
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHH-HhhhhhcccccccCCCceEEEECCCC----CCHHHHHHHHHHHhCC-CEEE
Confidence 4577888888889999998888766542 11111 00 11235789999998 5566677666665543 2333
Q ss_pred eehhhhhcCCCcccccCCCCcc-------cccceEee-CCcEEEEecCC-CCcCcccccchhH-----HHHHHHHHHhCe
Q 013415 242 LTVNYLNTASLAPKKDYQTNRL-------IPGVLQLA-DGSHLIIDETQ-LETGTLNSTGVEN-----ARLLKNLMEFQK 307 (443)
Q Consensus 242 ltl~~LN~~~l~P~kD~~~~~L-------~sG~LQLa-~gT~lviDEt~-L~~G~L~~~Gv~N-----~~aL~~li~~Q~ 307 (443)
+....+....+... +.+.. ..|.+..+ .++.++|||.. |.... ...|-.. ..+|..+++...
T Consensus 81 i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~-~~~~~~~~~~~~~~~Ll~~le~~~ 156 (310)
T 1ofh_A 81 VEATKFTEVGYVGK---EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG-EYSGADVSREGVQRDLLPLVEGST 156 (310)
T ss_dssp EEGGGGSSCCSGGG---STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCS-SCCSSHHHHHHHHHHHHHHHHCCE
T ss_pred EcchhcccCCccCc---cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccc-cccccchhHHHHHHHHHHHhcCCe
Confidence 44444433222221 11111 12334333 47899999998 44321 1111111 456778888665
Q ss_pred eeeeecccceeeeeccceEEeec-----CCCCccc-----CceeeeeccCCCCCCCCCChhhH-HHHH--------HHHH
Q 013415 308 VEYNFEYYKMEMIADVQMLILSE-----GKSNIVP-----ADLVIPFQPSSAASFEVVPAETL-EAWR--------WYLA 368 (443)
Q Consensus 308 v~YdF~y~~~e~~~di~vliLS~-----gKS~~lp-----~D~~vpl~~~~~~~~~~~~~~~L-~~~R--------~Yl~ 368 (443)
+... +. ..+..--++|.+. ....+.| ++..+.+.+ ++.+++ ..++ .|..
T Consensus 157 ~~~~--~~--~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~--------~~~~~~~~il~~~~~~~~~~~~~ 224 (310)
T 1ofh_A 157 VSTK--HG--MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTA--------LSAADFERILTEPHASLTEQYKA 224 (310)
T ss_dssp EEET--TE--EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCC--------CCHHHHHHHHHSSTTCHHHHHHH
T ss_pred Eecc--cc--cccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCC--------cCHHHHHHHHHhhHHHHHHHHHH
Confidence 4432 21 2233322333332 1111211 333343332 222222 1222 2222
Q ss_pred Hhcc--CCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH-----HcCCC-CCCHHHHHHHHH
Q 013415 369 SVRS--LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSA-----SFGET-SLSLEHWQMVKE 433 (443)
Q Consensus 369 ~~r~--~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAl-----S~G~~-~lt~e~W~~a~~ 433 (443)
.++. ....+++++.++|.+..-..++....-+.+.+..++.-+=..+. ..|+. .+|.++.+.++.
T Consensus 225 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~ 297 (310)
T 1ofh_A 225 LMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALG 297 (310)
T ss_dssp HHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTC
T ss_pred HHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHH
Confidence 2322 23579999999987766554443333456777777664321111 11222 499998887753
No 9
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.51 E-value=0.78 Score=43.53 Aligned_cols=130 Identities=12% Similarity=0.042 Sum_probs=75.1
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhccccc-ccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeee
Q 013415 167 ESLLRHLTSILGNDGIAAHLMLLHLLSRVHA-RIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLT 243 (443)
Q Consensus 167 ~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~-r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lplt 243 (443)
..+...|...+.|..-+-+.+...+-..... .....+ .-++.|.|.|| +-++.+.+.|...+++. .++.+.
T Consensus 9 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~ll~G~~G----tGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 9 LRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRP--IGSFLFLGPTG----VGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp HTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSC--SEEEEEESCSS----SSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCC--ceEEEEECCCC----cCHHHHHHHHHHHHcCCCcceEEee
Confidence 4567777877888888888777766543211 111111 23788999998 55777777777666432 133333
Q ss_pred hhhhhcCCC------c-cc-ccCCCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeee
Q 013415 244 VNYLNTASL------A-PK-KDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVE 309 (443)
Q Consensus 244 l~~LN~~~l------~-P~-kD~~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~ 309 (443)
...+..... . |. ..+.....-.+.+.-++++.++|||.. .....-..+|..+++...+.
T Consensus 83 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~-------~l~~~~~~~Ll~~le~~~~~ 149 (311)
T 4fcw_A 83 MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIE-------KAHPDVFNILLQMLDDGRLT 149 (311)
T ss_dssp GGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGG-------GSCHHHHHHHHHHHHHSEEE
T ss_pred cccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChh-------hcCHHHHHHHHHHHhcCEEE
Confidence 333322110 0 00 011111234456666788999999985 22233577899999988765
No 10
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.93 E-value=2.5 Score=40.70 Aligned_cols=184 Identities=13% Similarity=0.074 Sum_probs=100.7
Q ss_pred eeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEeeCCcEEEEecCC-CCcC
Q 013415 208 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQ-LETG 286 (443)
Q Consensus 208 sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa~gT~lviDEt~-L~~G 286 (443)
++-|+|.|| +-++.|.+.+..-.... ++.++...+. . .+.+....-.+++++.|+|||.. |.
T Consensus 57 ~vll~G~~G----tGKT~la~~ia~~~~~~-~~~~~~~~~~------~----~~~~~~~~~~~~~~~vl~lDEi~~l~-- 119 (338)
T 3pfi_A 57 HILFSGPAG----LGKTTLANIISYEMSAN-IKTTAAPMIE------K----SGDLAAILTNLSEGDILFIDEIHRLS-- 119 (338)
T ss_dssp CEEEECSTT----SSHHHHHHHHHHHTTCC-EEEEEGGGCC------S----HHHHHHHHHTCCTTCEEEEETGGGCC--
T ss_pred eEEEECcCC----CCHHHHHHHHHHHhCCC-eEEecchhcc------c----hhHHHHHHHhccCCCEEEEechhhcC--
Confidence 588999998 56777777776655432 2223222211 1 12233333347889999999987 43
Q ss_pred cccccchhHHHHHHHHHHhCeeeeeecc--cceeeeeccc--eEEeecCCCCccc------CceeeeeccCCCCCCCCCC
Q 013415 287 TLNSTGVENARLLKNLMEFQKVEYNFEY--YKMEMIADVQ--MLILSEGKSNIVP------ADLVIPFQPSSAASFEVVP 356 (443)
Q Consensus 287 ~L~~~Gv~N~~aL~~li~~Q~v~YdF~y--~~~e~~~di~--vliLS~gKS~~lp------~D~~vpl~~~~~~~~~~~~ 356 (443)
..-..+|..+++...+..-..- ..-.+.++.| ++|.+..+...+. ++..+.+. +++
T Consensus 120 ------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~--------~~~ 185 (338)
T 3pfi_A 120 ------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLE--------FYK 185 (338)
T ss_dssp ------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECC--------CCC
T ss_pred ------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCC--------CcC
Confidence 2236678888888765432111 1112223322 2333332221111 22333332 223
Q ss_pred hhhH-HHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 357 AETL-EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 357 ~~~L-~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
.+++ ..++.++. .....+++++.+.|.+.+ .=+.+.+..++..+..+|...+...++.++...++.
T Consensus 186 ~~e~~~il~~~~~---~~~~~~~~~~~~~l~~~~--------~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~ 252 (338)
T 3pfi_A 186 DSELALILQKAAL---KLNKTCEEKAALEIAKRS--------RSTPRIALRLLKRVRDFADVNDEEIITEKRANEALN 252 (338)
T ss_dssp HHHHHHHHHHHHH---HTTCEECHHHHHHHHHTT--------TTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHH--------CcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHH
Confidence 3332 33443332 345678888877774422 224688888888888888888888899998887764
No 11
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.07 E-value=1.9 Score=40.46 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 398 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 398 ~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
..+..++..++..|.+.|...|...++.+++..|++-
T Consensus 221 g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 221 GCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 4678999999999999999999999999999998753
No 12
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.42 E-value=3.8 Score=39.70 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=44.3
Q ss_pred cCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 372 SLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 372 ~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
..+..+++++.+.|-+.. .. -+.+.+..++.-|...|...|...+|.++++.|+++
T Consensus 274 ~~~~~~~~~~l~~l~~~~------~~-G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 274 EEDVEMSEDAYTVLTRIG------LE-TSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HTTCCBCHHHHHHHHHHH------HH-SCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHh------cC-CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 356779998887774322 10 246899999999999999999999999999999876
No 13
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=88.08 E-value=0.4 Score=46.04 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=31.7
Q ss_pred cCCCCCCcEE--EEEEcCCCCCcccCcEEEEEEEeecCcc
Q 013415 67 NAERNSLPCL--VKIYDCPESELKLNEVFEFVGVLTLDSD 104 (443)
Q Consensus 67 n~P~~~~~cl--VKvYd~~~~~lKlNdvve~vGILs~~p~ 104 (443)
.+|.+.+|.- |-++|+..+..||||.|+|+||+...|.
T Consensus 203 ~vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~~~~ 242 (268)
T 2vl6_A 203 EVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQD 242 (268)
T ss_dssp GSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEEECS
T ss_pred CCCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEEeec
Confidence 3788888875 6666888889999999999999987664
No 14
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.71 E-value=7.2 Score=42.31 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=70.6
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhccc-ccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhh
Q 013415 169 LLRHLTSILGNDGIAAHLMLLHLLSRV-HARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYL 247 (443)
Q Consensus 169 Ll~~La~~l~GD~laAeyLLL~L~S~V-~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~L 247 (443)
+...|...+.|...+.+.+.-.+.... -......+.| ++.|.|.|| +-+..+.+.+...+. ..++.++...+
T Consensus 452 l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~--~~ll~G~~G----tGKT~la~~la~~l~-~~~~~i~~s~~ 524 (758)
T 1r6b_X 452 LGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVG--SFLFAGPTG----VGKTEVTVQLSKALG-IELLRFDMSEY 524 (758)
T ss_dssp HHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSE--EEEEECSTT----SSHHHHHHHHHHHHT-CEEEEEEGGGC
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCce--EEEEECCCC----CcHHHHHHHHHHHhc-CCEEEEechhh
Confidence 444555556677766665544332110 0011112223 689999998 567777777777665 33444544433
Q ss_pred hcC----CCc--ccc--cCCCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeee
Q 013415 248 NTA----SLA--PKK--DYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVE 309 (443)
Q Consensus 248 N~~----~l~--P~k--D~~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~ 309 (443)
... .+. |.. .++.+....|.+..++++.++|||.. ...-.-+..|..+|+...+.
T Consensus 525 ~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~-------~~~~~~~~~Ll~~le~~~~~ 587 (758)
T 1r6b_X 525 MERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIE-------KAHPDVFNILLQVMDNGTLT 587 (758)
T ss_dssp SSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGG-------GSCHHHHHHHHHHHHHSEEE
T ss_pred cchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcc-------ccCHHHHHHHHHHhcCcEEE
Confidence 321 110 110 11112334566777889999999986 22233477889999988765
No 15
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.88 E-value=1.8 Score=47.24 Aligned_cols=205 Identities=12% Similarity=0.092 Sum_probs=106.7
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhccccc-ccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCc--eEEEeeehhhh
Q 013415 171 RHLTSILGNDGIAAHLMLLHLLSRVHA-RIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPF--TQCIPLTVNYL 247 (443)
Q Consensus 171 ~~La~~l~GD~laAeyLLL~L~S~V~~-r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~--s~~lpltl~~L 247 (443)
..|...+.|..-+.+.+.-.+...... .....++| ++.|.|.|| +-+..+.+.|...+.. ..++.+....+
T Consensus 487 ~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~--~~Ll~Gp~G----tGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 487 NILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIG--SFIFLGPTG----VGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSE--EEEEESCTT----SSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred HHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCce--EEEEECCCC----CCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 344445566666666555444322111 11123333 789999998 6677788888777632 23344444433
Q ss_pred hcCCCcccccCCCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEE
Q 013415 248 NTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLI 327 (443)
Q Consensus 248 N~~~l~P~kD~~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vli 327 (443)
...... .+..-.+.+.-.+++.|+|||.. ...-.-...|-.+++.+.+.-. .-.. ....|+.++.
T Consensus 561 ~~~~~~------~~~~l~~~~~~~~~~vl~lDEi~-------~~~~~~~~~Ll~~le~g~~~~~-~g~~-~~~~~~~iI~ 625 (758)
T 3pxi_A 561 MEKHST------SGGQLTEKVRRKPYSVVLLDAIE-------KAHPDVFNILLQVLEDGRLTDS-KGRT-VDFRNTILIM 625 (758)
T ss_dssp CSSCCC------C---CHHHHHHCSSSEEEEECGG-------GSCHHHHHHHHHHHHHSBCC------C-CBCTTCEEEE
T ss_pred cccccc------ccchhhHHHHhCCCeEEEEeCcc-------ccCHHHHHHHHHHhccCeEEcC-CCCE-eccCCeEEEE
Confidence 322111 12233455666789999999995 2223347788999998776432 1112 1224565555
Q ss_pred eecCCCC------------ccc-----CceeeeeccCCCCCCCCCChhhH-HHHHHHHHHhc------cCCCcCChhHHH
Q 013415 328 LSEGKSN------------IVP-----ADLVIPFQPSSAASFEVVPAETL-EAWRWYLASVR------SLPHSIESDMQK 383 (443)
Q Consensus 328 LS~gKS~------------~lp-----~D~~vpl~~~~~~~~~~~~~~~L-~~~R~Yl~~~r------~~~~~i~ee~~~ 383 (443)
.|...+. |.| +|.+|++.|- +++++ ..++.++.... .....+++++.+
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l--------~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~ 697 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSL--------EKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKA 697 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC----------CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCC--------CHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHH
Confidence 5542110 112 3444444332 33333 45566655432 124578898877
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHH
Q 013415 384 VVESDLVAARQADRSLGGQDLSRLLT 409 (443)
Q Consensus 384 ~Iq~dFV~~Rq~~~~it~~~L~~~L~ 409 (443)
+|.+ +.-+...+.+.|.+++.
T Consensus 698 ~l~~-----~~~~~~~~~R~L~~~i~ 718 (758)
T 3pxi_A 698 KVAE-----EGVDLEYGARPLRRAIQ 718 (758)
T ss_dssp HHHG-----GGCCTTTTTTTHHHHHH
T ss_pred HHHH-----hCCCCCCCChHHHHHHH
Confidence 7732 22355667777777765
No 16
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.76 E-value=12 Score=35.40 Aligned_cols=185 Identities=15% Similarity=0.044 Sum_probs=92.4
Q ss_pred eeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccce-EeeCCcEEEEecCC-CC
Q 013415 207 LSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVL-QLADGSHLIIDETQ-LE 284 (443)
Q Consensus 207 ~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~L-QLa~gT~lviDEt~-L~ 284 (443)
-++-|+|.|| +-++.+...+..-.... ++.+... .+.... .+..-.- .+++++.++|||.. |.
T Consensus 39 ~~vll~G~~G----tGKT~la~~i~~~~~~~-~~~~~~~-----~~~~~~-----~l~~~l~~~~~~~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 39 EHLLLFGPPG----LGKTTLAHVIAHELGVN-LRVTSGP-----AIEKPG-----DLAAILANSLEEGDILFIDEIHRLS 103 (324)
T ss_dssp CCCEEECCTT----CCCHHHHHHHHHHHTCC-EEEECTT-----TCCSHH-----HHHHHHTTTCCTTCEEEETTTTSCC
T ss_pred CcEEEECCCC----CCHHHHHHHHHHHhCCC-EEEEecc-----ccCChH-----HHHHHHHHhccCCCEEEEECCcccc
Confidence 4688999998 44555655554433321 1111111 111111 1111111 25789999999996 33
Q ss_pred cCcccccchhHHHHHHHHHHhCeeeeeecc----cceeee-eccceEEeecCCCCccc-----CceeeeeccCCCCCCCC
Q 013415 285 TGTLNSTGVENARLLKNLMEFQKVEYNFEY----YKMEMI-ADVQMLILSEGKSNIVP-----ADLVIPFQPSSAASFEV 354 (443)
Q Consensus 285 ~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y----~~~e~~-~di~vliLS~gKS~~lp-----~D~~vpl~~~~~~~~~~ 354 (443)
-.....|..+++...+..-... ..+..+ .++.++..+.....+.+ ++..+.+ ..
T Consensus 104 --------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l--------~~ 167 (324)
T 1hqc_A 104 --------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHL--------EY 167 (324)
T ss_dssp --------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEEC--------CC
T ss_pred --------cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEec--------CC
Confidence 2246778888888765432111 111111 12333333332221111 1112222 22
Q ss_pred CChhhHHHHHHHHHHh-ccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 355 VPAETLEAWRWYLASV-RSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 355 ~~~~~L~~~R~Yl~~~-r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
++.++ ++.++... +..+..+++++.+.|.+. .. =+.+.+..++..+..+|...+...++.+++..+..
T Consensus 168 ~~~~e---~~~~l~~~~~~~~~~~~~~~~~~l~~~------~~--G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~ 236 (324)
T 1hqc_A 168 YTPEE---LAQGVMRDARLLGVRITEEAALEIGRR------SR--GTMRVAKRLFRRVRDFAQVAGEEVITRERALEALA 236 (324)
T ss_dssp CCHHH---HHHHHHHHHHTTTCCCCHHHHHHHHHH------SC--SCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHH
T ss_pred CCHHH---HHHHHHHHHHhcCCCCCHHHHHHHHHH------cc--CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 23333 33344332 234567888877766432 22 24577777777776667666777888888877654
No 17
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=86.18 E-value=0.54 Score=45.54 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=30.3
Q ss_pred CCCCCCcEE--EEEEcCCCCCcccCcEEEEEEEeecCc
Q 013415 68 AERNSLPCL--VKIYDCPESELKLNEVFEFVGVLTLDS 103 (443)
Q Consensus 68 ~P~~~~~cl--VKvYd~~~~~lKlNdvve~vGILs~~p 103 (443)
+|.+.+|.- |-++|+..+..||||.|+|+||+...+
T Consensus 191 vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~~~ 228 (279)
T 1ltl_A 191 LSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVR 228 (279)
T ss_dssp CCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEE
T ss_pred CCCCCCCeEEEEEEcccccCccCCCCEEEEEEEEEEee
Confidence 688888875 666688888999999999999998754
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.14 E-value=4.3 Score=37.15 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 398 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 398 ~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
..+..++..++.-|.+.|...|...++.+++..|++-
T Consensus 212 g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 212 GFSGADIANICNEAALHAAREGHTSVHTLNFEYAVER 248 (262)
T ss_dssp TCCHHHHHHHHHHHHTC--------CCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4678899999999999999999999999999988653
No 19
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.72 E-value=1.7 Score=42.93 Aligned_cols=134 Identities=14% Similarity=0.079 Sum_probs=73.6
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhccccccc--------------------CceeeeeeeeEeecCCCcchhhhHHHHH
Q 013415 168 SLLRHLTSILGNDGIAAHLMLLHLLSRVHARI--------------------DNVAVGKLSLNLTCLSKESVSVFGNQVR 227 (443)
Q Consensus 168 ~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~--------------------d~~~lG~~sLnl~~~p~~~~~~~~~~L~ 227 (443)
.+...|...+.|...|.+.|...+........ ++...+.-++.|.|.|| +-++.+.
T Consensus 14 ~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~G----tGKT~la 89 (376)
T 1um8_A 14 ELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTG----SGKTLMA 89 (376)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTT----SSHHHHH
T ss_pred HHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCC----CCHHHHH
Confidence 46667777778899999988877653211111 11233567899999998 5677777
Q ss_pred HHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcc-------cccceEeeCCcEEEEecCC-CCcC------cccccch
Q 013415 228 LSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRL-------IPGVLQLADGSHLIIDETQ-LETG------TLNSTGV 293 (443)
Q Consensus 228 ~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L-------~sG~LQLa~gT~lviDEt~-L~~G------~L~~~Gv 293 (443)
+.+...+.. .++.+....+....+.- +..... ..|.+..+.++.++|||.. |... ..+..|-
T Consensus 90 ~~la~~l~~-~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~ 165 (376)
T 1um8_A 90 QTLAKHLDI-PIAISDATSLTEAGYVG---EDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGE 165 (376)
T ss_dssp HHHHHHTTC-CEEEEEGGGCC-----------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CH
T ss_pred HHHHHHhCC-CEEEecchhhhhcCcCC---ccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchH
Confidence 777766643 22333333332111100 010111 1244556789999999997 4322 1122222
Q ss_pred hHHHHHHHHHHhCeee
Q 013415 294 ENARLLKNLMEFQKVE 309 (443)
Q Consensus 294 ~N~~aL~~li~~Q~v~ 309 (443)
.-..+|..+|+.+.+.
T Consensus 166 ~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 166 GVQQALLKIVEGSLVN 181 (376)
T ss_dssp HHHHHHHHHHHCCEEC
T ss_pred HHHHHHHHHhhcccee
Confidence 2478899999977553
No 20
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=84.04 E-value=18 Score=35.71 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=35.4
Q ss_pred cCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHc------------CCCCCCHHHHHHHHH
Q 013415 372 SLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASF------------GETSLSLEHWQMVKE 433 (443)
Q Consensus 372 ~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~------------G~~~lt~e~W~~a~~ 433 (443)
.....++++..+.|- +.. ...+..++..++.-|-+.+... +...++.+++..+++
T Consensus 297 ~~~~~l~~~~~~~la------~~~-~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~ 363 (389)
T 3vfd_A 297 KQGSPLTQKELAQLA------RMT-DGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLK 363 (389)
T ss_dssp TSCCCSCHHHHHHHH------HHT-TTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHH------HHc-CCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHH
Confidence 345667776544432 122 2367788888888777777655 345788888887764
No 21
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.83 E-value=12 Score=34.29 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 398 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 398 ~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
..+..+|..++.-|-+.|...|...++.++++.|++
T Consensus 215 G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 215 GFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 468999999999999999999999999999999875
No 22
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=80.90 E-value=32 Score=35.43 Aligned_cols=132 Identities=18% Similarity=0.222 Sum_probs=73.0
Q ss_pred CCcEEEEecCC-CCcC------cccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCCcccCceeeee
Q 013415 272 DGSHLIIDETQ-LETG------TLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPF 344 (443)
Q Consensus 272 ~gT~lviDEt~-L~~G------~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~~lp~D~~vpl 344 (443)
++|.+.+||.. +..+ -....|| .+||-.+++--.+.- .| ..++++-=+.|.+..-..--|.|++=++
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egv--q~aLL~~le~~~~~~--~~--~~~d~~~ilfI~~gaf~~~~~~dlipel 323 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGV--QRDLLPLVEGSTVST--KH--GMVKTDHILFIASGAFQVARPSDLIPEL 323 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHH--HHHHHHHHHCCEEEE--TT--EEEECTTCEEEEEECCSSCCGGGSCHHH
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHH--HHHHHHHhccccccc--cc--ceecCCcEEEEeccccccCChhhcchHH
Confidence 68899999997 6532 1112233 468999999877765 33 5566665444444321101124433111
Q ss_pred ccCCCC--CCCCCChhhH---------HHHHHHHHHhcc--CCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 013415 345 QPSSAA--SFEVVPAETL---------EAWRWYLASVRS--LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLT 409 (443)
Q Consensus 345 ~~~~~~--~~~~~~~~~L---------~~~R~Yl~~~r~--~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~ 409 (443)
..--.- .+.+.+++++ ..+++|...... ....+++++.+.|-+...+....-+.++++-|++.|-
T Consensus 324 ~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie 401 (444)
T 1g41_A 324 QGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVME 401 (444)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHH
T ss_pred hcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHH
Confidence 111000 1233344332 145667665543 4567999999988776655433345678888888765
No 23
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=77.22 E-value=1 Score=38.36 Aligned_cols=75 Identities=11% Similarity=-0.046 Sum_probs=49.6
Q ss_pred eeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEeeCCcEEEEecCC-CC
Q 013415 206 KLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQ-LE 284 (443)
Q Consensus 206 ~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa~gT~lviDEt~-L~ 284 (443)
..++-|.|.|| +-++.+.+.+....+ .++.+....+.. .+..|.+..++|+.++|||.. |.
T Consensus 27 ~~~vll~G~~G----tGKt~lA~~i~~~~~--~~~~~~~~~~~~------------~~~~~~~~~a~~~~l~lDei~~l~ 88 (143)
T 3co5_A 27 TSPVFLTGEAG----SPFETVARYFHKNGT--PWVSPARVEYLI------------DMPMELLQKAEGGVLYVGDIAQYS 88 (143)
T ss_dssp SSCEEEEEETT----CCHHHHHGGGCCTTS--CEECCSSTTHHH------------HCHHHHHHHTTTSEEEEEECTTCC
T ss_pred CCcEEEECCCC----ccHHHHHHHHHHhCC--CeEEechhhCCh------------HhhhhHHHhCCCCeEEEeChHHCC
Confidence 35789999998 667778888877666 333333322221 126788889999999999997 33
Q ss_pred cCcccccchhHHHHHHHHHHhC
Q 013415 285 TGTLNSTGVENARLLKNLMEFQ 306 (443)
Q Consensus 285 ~G~L~~~Gv~N~~aL~~li~~Q 306 (443)
. .-...|..+++..
T Consensus 89 ~--------~~q~~Ll~~l~~~ 102 (143)
T 3co5_A 89 R--------NIQTGITFIIGKA 102 (143)
T ss_dssp H--------HHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHHHhC
Confidence 2 2245566777754
No 24
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=74.72 E-value=13 Score=38.68 Aligned_cols=186 Identities=13% Similarity=0.100 Sum_probs=94.7
Q ss_pred eeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEeeCC---cEEEEecCC-
Q 013415 207 LSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADG---SHLIIDETQ- 282 (443)
Q Consensus 207 ~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa~g---T~lviDEt~- 282 (443)
-++.|.|.|| +-++.+.+.+..-.. ..++.++...+.+..+. +...-..|+++.+.+ +.|+|||..
T Consensus 239 ~~vLL~GppG----tGKT~lAraia~~~~-~~fv~vn~~~l~~~~~g-----~~~~~~~~~f~~A~~~~p~iLfLDEId~ 308 (489)
T 3hu3_A 239 RGILLYGPPG----TGKTLIARAVANETG-AFFFLINGPEIMSKLAG-----ESESNLRKAFEEAEKNAPAIIFIDELDA 308 (489)
T ss_dssp CEEEEECSTT----SSHHHHHHHHHHHCS-SEEEEEEHHHHHTSCTT-----HHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred CcEEEECcCC----CCHHHHHHHHHHHhC-CCEEEEEchHhhhhhcc-----hhHHHHHHHHHHHHhcCCcEEEecchhh
Confidence 3589999998 567777777776663 44555666655543210 111223455555544 389999986
Q ss_pred CCcCcc---cccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCCccc--------CceeeeeccCCCCC
Q 013415 283 LETGTL---NSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVP--------ADLVIPFQPSSAAS 351 (443)
Q Consensus 283 L~~G~L---~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~~lp--------~D~~vpl~~~~~~~ 351 (443)
|....- .+...+-...|-.+|+.. ..+.++.++..+.... .++ ++..+.+
T Consensus 309 l~~~~~~~~~~~~~~~~~~LL~~ld~~-----------~~~~~v~vIaaTn~~~-~Ld~al~r~gRf~~~i~i------- 369 (489)
T 3hu3_A 309 IAPKREKTHGEVERRIVSQLLTLMDGL-----------KQRAHVIVMAATNRPN-SIDPALRRFGRFDREVDI------- 369 (489)
T ss_dssp HCBCTTSCCCHHHHHHHHHHHHHHHHS-----------CTTSCEEEEEEESCGG-GBCGGGGSTTSSCEEEEC-------
T ss_pred hccccccccchHHHHHHHHHHHHhhcc-----------ccCCceEEEEecCCcc-ccCHHHhCCCcCceEEEe-------
Confidence 332110 111222344555555532 1122333333333221 111 2222222
Q ss_pred CCCCCh-hhHHHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCC---------
Q 013415 352 FEVVPA-ETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGET--------- 421 (443)
Q Consensus 352 ~~~~~~-~~L~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~--------- 421 (443)
..++. +..+.|+.++. ......+.++.+. .. + -...+..+|..++.-|-+.|...+..
T Consensus 370 -~~P~~~eR~~IL~~~~~---~~~l~~~~~l~~l------a~-~-t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~ 437 (489)
T 3hu3_A 370 -GIPDATGRLEILQIHTK---NMKLADDVDLEQV------AN-E-THGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437 (489)
T ss_dssp -CCCCHHHHHHHHHHHTT---TSCBCTTCCHHHH------HH-T-CTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSC
T ss_pred -CCCCHHHHHHHHHHHHh---cCCCcchhhHHHH------HH-H-ccCCcHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 12222 33455554432 2222222222221 11 1 22467899999999999999888754
Q ss_pred --------CCCHHHHHHHHH
Q 013415 422 --------SLSLEHWQMVKE 433 (443)
Q Consensus 422 --------~lt~e~W~~a~~ 433 (443)
.++.++++.|++
T Consensus 438 ~~~~~~~~~vt~edf~~Al~ 457 (489)
T 3hu3_A 438 DAEVMNSLAVTMDDFRWALS 457 (489)
T ss_dssp CHHHHHHCCBCHHHHHHHHT
T ss_pred chhhcccCcCCHHHHHHHHH
Confidence 478889988764
No 25
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=74.25 E-value=16 Score=37.11 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=43.7
Q ss_pred HHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 361 EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 361 ~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
..++.++. ..+..+++++.++|.. ..+ =+.+++..+|..+.+.|...|+ .+|.++++.++.
T Consensus 270 ~iL~~~~~---~~~~~i~~e~l~~la~------~~~--gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~ 330 (440)
T 2z4s_A 270 SIARKMLE---IEHGELPEEVLNFVAE------NVD--DNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLK 330 (440)
T ss_dssp HHHHHHHH---HHTCCCCTTHHHHHHH------HCC--SCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTS
T ss_pred HHHHHHHH---HcCCCCCHHHHHHHHH------hcC--CCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 44444443 2356789998877743 222 2579999999988888887886 699999998864
No 26
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=73.60 E-value=5.5 Score=39.90 Aligned_cols=195 Identities=18% Similarity=0.162 Sum_probs=112.4
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhhcC-----CCcccccCCCC--cccccceEeeCCcE
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNTA-----SLAPKKDYQTN--RLIPGVLQLADGSH 275 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN~~-----~l~P~kD~~~~--~L~sG~LQLa~gT~ 275 (443)
.++++-|.|.++ +-++.+.+.+..+.++. .++.+....+... -|--.|-.-|| .-..|.+..|+||.
T Consensus 159 ~~~~vli~Ge~G----tGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gt 234 (387)
T 1ny5_A 159 AECPVLITGESG----VGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGT 234 (387)
T ss_dssp CCSCEEEECSTT----SSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSE
T ss_pred CCCCeEEecCCC----cCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcE
Confidence 457888999987 56778888998888763 3554443322210 11111111122 34789999999999
Q ss_pred EEEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCC------CcccCc-------ee
Q 013415 276 LIIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS------NIVPAD-------LV 341 (443)
Q Consensus 276 lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS------~~lp~D-------~~ 341 (443)
|+|||.. |.. .-...|-.+++.+++... ...-..++|+.++.-|...- .-+-.| +.
T Consensus 235 lfldei~~l~~--------~~q~~Ll~~l~~~~~~~~--g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~ 304 (387)
T 1ny5_A 235 LFLDEIGELSL--------EAQAKLLRVIESGKFYRL--GGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIE 304 (387)
T ss_dssp EEEESGGGCCH--------HHHHHHHHHHHHSEECCB--TCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEE
T ss_pred EEEcChhhCCH--------HHHHHHHHHHhcCcEEeC--CCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCe
Confidence 9999986 432 346678888888875432 23456788888777665211 001111 11
Q ss_pred eeeccCCCCCCCCCChhhH-HHHHHHHHHh-ccC--C-CcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 013415 342 IPFQPSSAASFEVVPAETL-EAWRWYLASV-RSL--P-HSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSA 416 (443)
Q Consensus 342 vpl~~~~~~~~~~~~~~~L-~~~R~Yl~~~-r~~--~-~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAl 416 (443)
+.+.|-.+ -.+++ ..++.|+... +.. + ..+++++.+.+.. -+.+=+.++|...+.-| ...
T Consensus 305 i~lPpLre------R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~-------~~wpGNvreL~~~i~~~--~~~ 369 (387)
T 1ny5_A 305 IEIPPLRE------RKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLS-------YPWYGNVRELKNVIERA--VLF 369 (387)
T ss_dssp EECCCGGG------CHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHH-------SCCTTHHHHHHHHHHHH--HHH
T ss_pred ecCCcchh------ccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-------CCCCcHHHHHHHHHHHH--HHh
Confidence 21111111 12333 5667777654 222 2 4588887777642 34454568888887744 444
Q ss_pred HcCCCCCCHHHHH
Q 013415 417 SFGETSLSLEHWQ 429 (443)
Q Consensus 417 S~G~~~lt~e~W~ 429 (443)
+.| ..++.++..
T Consensus 370 ~~~-~~i~~~~l~ 381 (387)
T 1ny5_A 370 SEG-KFIDRGELS 381 (387)
T ss_dssp CCS-SEECHHHHH
T ss_pred CCC-CcCcHHHCc
Confidence 455 467777653
No 27
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=70.51 E-value=31 Score=33.04 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=38.3
Q ss_pred eeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEee---CCcEEEEecCC
Q 013415 207 LSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLA---DGSHLIIDETQ 282 (443)
Q Consensus 207 ~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa---~gT~lviDEt~ 282 (443)
-.+.|.|.|| +-+..|.+.+..-+.. .++.++...+.+..+ .++......+++.+ ..+.|+|||..
T Consensus 52 ~~vLl~GppG----tGKT~la~aia~~~~~-~~~~v~~~~l~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid 120 (322)
T 3eie_A 52 SGILLYGPPG----TGKSYLAKAVATEANS-TFFSVSSSDLVSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVD 120 (322)
T ss_dssp CEEEEECSSS----SCHHHHHHHHHHHHTC-EEEEEEHHHHHTTTG-----GGHHHHHHHHHHHHHHTSSEEEEEECGG
T ss_pred CeEEEECCCC----CcHHHHHHHHHHHHCC-CEEEEchHHHhhccc-----chHHHHHHHHHHHHHhcCCeEEEechhh
Confidence 4689999998 5567777777666543 344466555543221 11112223333333 34789999998
No 28
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=70.39 E-value=9 Score=35.42 Aligned_cols=110 Identities=16% Similarity=0.146 Sum_probs=62.8
Q ss_pred eeeEeecCCCcchhhhHHHHHHHHHhhcCce--EEEeeehhhhhc-----CCCcccccCCCC--cccccceEeeCCcEEE
Q 013415 207 LSLNLTCLSKESVSVFGNQVRLSVQNLLPFT--QCIPLTVNYLNT-----ASLAPKKDYQTN--RLIPGVLQLADGSHLI 277 (443)
Q Consensus 207 ~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s--~~lpltl~~LN~-----~~l~P~kD~~~~--~L~sG~LQLa~gT~lv 277 (443)
.++-|.|.|| +-++.+.+.+....++. .++.+....+.. .-|-..+..-++ .-..|.|..++|+.|+
T Consensus 30 ~~vll~G~~G----tGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~ 105 (265)
T 2bjv_A 30 KPVLIIGERG----TGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLF 105 (265)
T ss_dssp SCEEEECCTT----SCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEE
T ss_pred CCEEEECCCC----CcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEE
Confidence 5789999998 67888888888887632 233333222211 001001100011 1246788889999999
Q ss_pred EecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 278 IDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 278 iDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
|||.. |.. .-...|..+++.+.+.- .......+.++.++..|.
T Consensus 106 lDEi~~l~~--------~~q~~Ll~~l~~~~~~~--~g~~~~~~~~~~iI~atn 149 (265)
T 2bjv_A 106 LDELATAPM--------MVQEKLLRVIEYGELER--VGGSQPLQVNVRLVCATN 149 (265)
T ss_dssp EESGGGSCH--------HHHHHHHHHHHHCEECC--CCC--CEECCCEEEEEES
T ss_pred EechHhcCH--------HHHHHHHHHHHhCCeec--CCCcccccCCeEEEEecC
Confidence 99997 332 23567888888875421 112234567777766665
No 29
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=68.69 E-value=68 Score=32.41 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=38.3
Q ss_pred eeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEe---eCCcEEEEecCC
Q 013415 207 LSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQL---ADGSHLIIDETQ 282 (443)
Q Consensus 207 ~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQL---a~gT~lviDEt~ 282 (443)
-++.|.|.|| +-+..|.+.+..-+....++.++...+.... -..+......+++. ...+.|+|||..
T Consensus 168 ~~vLL~GppG----tGKT~lA~aia~~~~~~~~~~v~~~~l~~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid 237 (444)
T 2zan_A 168 RGILLFGPPG----TGKSYLAKAVATEANNSTFFSISSSDLVSKW-----LGESEKLVKNLFQLARENKPSIIFIDEID 237 (444)
T ss_dssp SEEEEECSTT----SSHHHHHHHHHHHCCSSEEEEECCC--------------CCCTHHHHHHHHHHSCSEEEEESCTT
T ss_pred ceEEEECCCC----CCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh-----cchHHHHHHHHHHHHHHcCCeEEEEechH
Confidence 4689999998 6677788888777655555555544443211 11122233333333 245799999998
No 30
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=68.64 E-value=5.7 Score=40.80 Aligned_cols=174 Identities=10% Similarity=0.066 Sum_probs=88.1
Q ss_pred eeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCccccc---ceEeeCCcEEEEecCC-C
Q 013415 208 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPG---VLQLADGSHLIIDETQ-L 283 (443)
Q Consensus 208 sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG---~LQLa~gT~lviDEt~-L 283 (443)
++-|.|.|| +-++.|.+.|...+... +..++..+ ...++.. .+..+ ....+.++.|+|||.. |
T Consensus 52 ~vLL~GppG----tGKTtlAr~ia~~~~~~-f~~l~a~~------~~~~~ir--~~~~~a~~~~~~~~~~iLfIDEI~~l 118 (447)
T 3pvs_A 52 SMILWGPPG----TGKTTLAEVIARYANAD-VERISAVT------SGVKEIR--EAIERARQNRNAGRRTILFVDEVHRF 118 (447)
T ss_dssp EEEEECSTT----SSHHHHHHHHHHHTTCE-EEEEETTT------CCHHHHH--HHHHHHHHHHHTTCCEEEEEETTTCC
T ss_pred EEEEECCCC----CcHHHHHHHHHHHhCCC-eEEEEecc------CCHHHHH--HHHHHHHHhhhcCCCcEEEEeChhhh
Confidence 789999998 66778888887776543 33333221 1111100 00011 1123568999999997 4
Q ss_pred CcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec-CCCC-ccc---Cce-eeeeccCCCCCCCCCCh
Q 013415 284 ETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE-GKSN-IVP---ADL-VIPFQPSSAASFEVVPA 357 (443)
Q Consensus 284 ~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~-gKS~-~lp---~D~-~vpl~~~~~~~~~~~~~ 357 (443)
...+ ..+|-..++...+.+ +.-+. ..+. +.+ .-+ .+.+ .+++.
T Consensus 119 ~~~~--------q~~LL~~le~~~v~l---------------I~att~n~~~~l~~aL~sR~~v~~l--------~~l~~ 167 (447)
T 3pvs_A 119 NKSQ--------QDAFLPHIEDGTITF---------------IGATTENPSFELNSALLSRARVYLL--------KSLST 167 (447)
T ss_dssp --------------CCHHHHHTTSCEE---------------EEEESSCGGGSSCHHHHTTEEEEEC--------CCCCH
T ss_pred CHHH--------HHHHHHHHhcCceEE---------------EecCCCCcccccCHHHhCceeEEee--------CCcCH
Confidence 3321 345666777644222 11111 1110 100 001 1122 23344
Q ss_pred hhH-HHHHHHHHHh-cc---CCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHc--CCCCCCHHHHHH
Q 013415 358 ETL-EAWRWYLASV-RS---LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASF--GETSLSLEHWQM 430 (443)
Q Consensus 358 ~~L-~~~R~Yl~~~-r~---~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~--G~~~lt~e~W~~ 430 (443)
+++ ..++.++... +. ....+++++.+.|.+. .+. +.+.+..+|..+-.+|... |...+|.++.+.
T Consensus 168 edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~------~~G--d~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~ 239 (447)
T 3pvs_A 168 EDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL------VNG--DARRALNTLEMMADMAEVDDSGKRVLKPELLTE 239 (447)
T ss_dssp HHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH------HCS--CHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH------CCC--CHHHHHHHHHHHHHhcccccCCCCccCHHHHHH
Confidence 443 4555555542 22 3467899988887544 222 3566666666554444323 556899999887
Q ss_pred HHH
Q 013415 431 VKE 433 (443)
Q Consensus 431 a~~ 433 (443)
++.
T Consensus 240 ~l~ 242 (447)
T 3pvs_A 240 IAG 242 (447)
T ss_dssp HHT
T ss_pred HHh
Confidence 764
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=68.12 E-value=15 Score=37.36 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=48.8
Q ss_pred HHHHHHHHHh-ccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 361 EAWRWYLASV-RSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 361 ~~~R~Yl~~~-r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
+.++.||... ....+.+++++.++|-.-.. +. +.+.-..++..|+++|...|...++.++...|..|
T Consensus 369 ~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~-----~g--~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 369 QEMKQIIKIRAQTEGINISEEALNHLGEIGT-----KT--TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHHHHHHHHH-----HS--CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcc-----CC--CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 3455555432 22357799998888744221 11 46777888999999999999999999999999888
No 32
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=67.75 E-value=94 Score=30.26 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=38.7
Q ss_pred eeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEee---CCcEEEEecCC
Q 013415 207 LSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLA---DGSHLIIDETQ 282 (443)
Q Consensus 207 ~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa---~gT~lviDEt~ 282 (443)
-.+.|.|.|| +-+..|.+.+..-+. ..++.++...+....+ .........+++.+ ..+.|+|||..
T Consensus 85 ~~iLL~GppG----tGKT~la~ala~~~~-~~~~~v~~~~l~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid 153 (355)
T 2qp9_X 85 SGILLYGPPG----TGKSYLAKAVATEAN-STFFSVSSSDLVSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVD 153 (355)
T ss_dssp CCEEEECSTT----SCHHHHHHHHHHHHT-CEEEEEEHHHHHSCC--------CHHHHHHHHHHHHHTSSEEEEEECGG
T ss_pred ceEEEECCCC----CcHHHHHHHHHHHhC-CCEEEeeHHHHhhhhc-----chHHHHHHHHHHHHHHcCCeEEEEechH
Confidence 3688999998 456666666655553 3344456555543211 11223344444444 57899999998
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=66.62 E-value=48 Score=32.33 Aligned_cols=54 Identities=9% Similarity=0.103 Sum_probs=33.7
Q ss_pred CCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcC------------CCCCCHHHHHHHHH
Q 013415 373 LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFG------------ETSLSLEHWQMVKE 433 (443)
Q Consensus 373 ~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G------------~~~lt~e~W~~a~~ 433 (443)
....++++..+.|-. +. ...+..++..++.-|-+.+.... ...++.+++..|++
T Consensus 267 ~~~~l~~~~l~~la~------~t-~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~ 332 (357)
T 3d8b_A 267 EQCCLSEEEIEQIVQ------QS-DAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFR 332 (357)
T ss_dssp SCBCCCHHHHHHHHH------HT-TTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHH
T ss_pred cCCCccHHHHHHHHH------Hc-CCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHH
Confidence 355677765554422 22 24678888888877766665432 25688888887753
No 34
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=64.64 E-value=6.4 Score=33.26 Aligned_cols=62 Identities=11% Similarity=0.060 Sum_probs=42.0
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCceE--EEeeehhhhhcCCCcccccCCCCcccccceEeeCCcEEEEecCC
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ--CIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQ 282 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~--~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa~gT~lviDEt~ 282 (443)
...++-|.|.|| +-++.+.+.|....++.. ++ +....+... .-..|.+..++|+.|+|||..
T Consensus 23 ~~~~vll~G~~G----tGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-----------~~~~~~~~~a~~g~l~ldei~ 86 (145)
T 3n70_A 23 TDIAVWLYGAPG----TGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-----------PQLNDFIALAQGGTLVLSHPE 86 (145)
T ss_dssp CCSCEEEESSTT----SSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----------SCHHHHHHHHTTSCEEEECGG
T ss_pred CCCCEEEECCCC----CCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----------hhhhcHHHHcCCcEEEEcChH
Confidence 346799999998 678888888888765421 12 222222111 235677888899999999996
No 35
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=62.97 E-value=11 Score=36.26 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=64.6
Q ss_pred eeeeEeecCCCcchhhhHHHHHHHHHhhcCceE--EEeeehhhh-----hcCCCcccccCCCC--cccccceEeeCCcEE
Q 013415 206 KLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ--CIPLTVNYL-----NTASLAPKKDYQTN--RLIPGVLQLADGSHL 276 (443)
Q Consensus 206 ~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~--~lpltl~~L-----N~~~l~P~kD~~~~--~L~sG~LQLa~gT~l 276 (443)
..++.|.|.|| +-++.+.+.|....++.. ++.+....+ .+.-|-..+-.-++ .-..|.+..++|+.|
T Consensus 25 ~~~vLi~Ge~G----tGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L 100 (304)
T 1ojl_A 25 DATVLIHGDSG----TGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 100 (304)
T ss_dssp TSCEEEESCTT----SCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEE
T ss_pred CCcEEEECCCC----chHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEE
Confidence 45789999998 668888888888776531 222221111 11111111111111 235688889999999
Q ss_pred EEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeec
Q 013415 277 IIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSE 330 (443)
Q Consensus 277 viDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~ 330 (443)
+|||.. |.. .-...|-.+++...+. --......+.|+.++..|.
T Consensus 101 ~LDEi~~l~~--------~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~riI~atn 145 (304)
T 1ojl_A 101 FLDEIGDISP--------LMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATH 145 (304)
T ss_dssp EEESCTTCCH--------HHHHHHHHHHHSSBCC--BTTBCCCCBCCCEEEEEES
T ss_pred EEeccccCCH--------HHHHHHHHHHhcCEee--ecCCcccccCCeEEEEecC
Confidence 999997 332 2345677788876532 1122345677887776665
No 36
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=62.39 E-value=65 Score=35.48 Aligned_cols=91 Identities=12% Similarity=0.132 Sum_probs=49.8
Q ss_pred eeEeecCCCcchhhhHHHHHHHHHhhcCc--eEEEeeehhhhhcC----C-C-ccc--ccCCCCcccccceEeeCCcEEE
Q 013415 208 SLNLTCLSKESVSVFGNQVRLSVQNLLPF--TQCIPLTVNYLNTA----S-L-APK--KDYQTNRLIPGVLQLADGSHLI 277 (443)
Q Consensus 208 sLnl~~~p~~~~~~~~~~L~~~l~~L~P~--s~~lpltl~~LN~~----~-l-~P~--kD~~~~~L~sG~LQLa~gT~lv 277 (443)
++.|.|.|| +-+..+.+.|...+++ ..++.+....+... . | .|. .-|+.+..-.+.+.-.+++.|+
T Consensus 590 ~vLl~Gp~G----tGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~ 665 (854)
T 1qvr_A 590 SFLFLGPTG----VGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVIL 665 (854)
T ss_dssp EEEEBSCSS----SSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEE
T ss_pred EEEEECCCC----CCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEE
Confidence 789999998 5677777777776643 22233322222111 0 1 010 0112212233445556789999
Q ss_pred EecCCCCcCcccccchhHHHHHHHHHHhCeee
Q 013415 278 IDETQLETGTLNSTGVENARLLKNLMEFQKVE 309 (443)
Q Consensus 278 iDEt~L~~G~L~~~Gv~N~~aL~~li~~Q~v~ 309 (443)
|||.. .....-...|-.+++...+.
T Consensus 666 lDEi~-------~l~~~~~~~Ll~~l~~~~~~ 690 (854)
T 1qvr_A 666 FDEIE-------KAHPDVFNILLQILDDGRLT 690 (854)
T ss_dssp ESSGG-------GSCHHHHHHHHHHHTTTEEC
T ss_pred Eeccc-------ccCHHHHHHHHHHhccCceE
Confidence 99995 22223467788899988765
No 37
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=61.76 E-value=13 Score=36.97 Aligned_cols=181 Identities=14% Similarity=0.125 Sum_probs=102.5
Q ss_pred eeeeeEeecCCCcchhhhHHHHHHHHHhhcCceE-EEeeehhhhhcCCC-----cccccCCCC--cccccceEeeCCcEE
Q 013415 205 GKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ-CIPLTVNYLNTASL-----APKKDYQTN--RLIPGVLQLADGSHL 276 (443)
Q Consensus 205 G~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~-~lpltl~~LN~~~l-----~P~kD~~~~--~L~sG~LQLa~gT~l 276 (443)
...++.+.|.++ +-++.+.+.+....++.. ++.+....++...+ --.|..-|+ +-..|.+..|+||.|
T Consensus 151 ~~~~vli~GesG----tGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtl 226 (368)
T 3dzd_A 151 SKAPVLITGESG----TGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTL 226 (368)
T ss_dssp SCSCEEEECCTT----SSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEE
T ss_pred cchhheEEeCCC----chHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCeE
Confidence 345688889887 567778888888877643 55554444332211 111211122 346899999999999
Q ss_pred EEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCC------cccCce-------ee
Q 013415 277 IIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN------IVPADL-------VI 342 (443)
Q Consensus 277 viDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~------~lp~D~-------~v 342 (443)
.|||.. |. ..-...|-.+++.+++.-- ...-.+++|++++.-|...-. -+..|+ .+
T Consensus 227 fldei~~l~--------~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i 296 (368)
T 3dzd_A 227 FLDEVGELD--------QRVQAKLLRVLETGSFTRL--GGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQI 296 (368)
T ss_dssp EEETGGGSC--------HHHHHHHHHHHHHSEECCB--TCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEE
T ss_pred EecChhhCC--------HHHHHHHHHHHHhCCcccC--CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEE
Confidence 999996 43 2346677788888765422 234457888888777763210 001111 12
Q ss_pred eeccCCCCCCCCCChhhHHHHHHHHHHhc-cC---CCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 013415 343 PFQPSSAASFEVVPAETLEAWRWYLASVR-SL---PHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMG 411 (443)
Q Consensus 343 pl~~~~~~~~~~~~~~~L~~~R~Yl~~~r-~~---~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~La 411 (443)
.+.|-... .++-...++.|+.... .. ...+++++.+.+. +-+.+=+-++|...+.-+
T Consensus 297 ~lPpLreR-----~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~-------~~~wpGNvreL~n~i~~~ 357 (368)
T 3dzd_A 297 YLPPLRER-----GKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLM-------KQEWKGNVRELKNLIERA 357 (368)
T ss_dssp ECCCGGGS-----TTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH-------TCCCTTHHHHHHHHHHHH
T ss_pred eCCChhhc-----hhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH-------hCCCCcHHHHHHHHHHHH
Confidence 22111110 1233356777776553 22 3568998877763 233344457777776633
No 38
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.76 E-value=78 Score=32.18 Aligned_cols=187 Identities=15% Similarity=0.185 Sum_probs=98.7
Q ss_pred eEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEeeC---CcEEEEecCC-CC
Q 013415 209 LNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLAD---GSHLIIDETQ-LE 284 (443)
Q Consensus 209 Lnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa~---gT~lviDEt~-L~ 284 (443)
+.|.|+|| +-+..|.+.++.-+-.. ++.++...+-+.. -.++.+...-+.+.|. -..+.|||.. +-
T Consensus 185 vLL~GPPG----TGKTllAkAiA~e~~~~-f~~v~~s~l~sk~-----vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~ 254 (405)
T 4b4t_J 185 VILYGPPG----TGKTLLARAVAHHTDCK-FIRVSGAELVQKY-----IGEGSRMVRELFVMAREHAPSIIFMDEIDSIG 254 (405)
T ss_dssp EEEESCSS----SSHHHHHHHHHHHHTCE-EEEEEGGGGSCSS-----TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCT
T ss_pred eEEeCCCC----CCHHHHHHHHHHhhCCC-ceEEEhHHhhccc-----cchHHHHHHHHHHHHHHhCCceEeeecchhhc
Confidence 78999998 66777888887765543 3446665554422 1222333333444442 4688999998 43
Q ss_pred cCccc--ccchhH-HHHHHHHHHhCeeeeeecccceeeeeccce-EEeecCCCCcc--------cCceeeeeccCCCCCC
Q 013415 285 TGTLN--STGVEN-ARLLKNLMEFQKVEYNFEYYKMEMIADVQM-LILSEGKSNIV--------PADLVIPFQPSSAASF 352 (443)
Q Consensus 285 ~G~L~--~~Gv~N-~~aL~~li~~Q~v~YdF~y~~~e~~~di~v-liLS~gKS~~l--------p~D~~vpl~~~~~~~~ 352 (443)
...-. ..|-.. ...+..++++- | .+. ..-+| +|.++.+-..+ -+|..|.+.
T Consensus 255 ~~R~~~~~~~~~~~~~~l~~lL~~l----D-g~~-----~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~------- 317 (405)
T 4b4t_J 255 STRVEGSGGGDSEVQRTMLELLNQL----D-GFE-----TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFP------- 317 (405)
T ss_dssp TSCSCSSSGGGGHHHHHHHHHHHHH----H-TTT-----CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECC-------
T ss_pred cCCCCCCCCCcHHHHHHHHHHHHhh----h-ccC-----CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcC-------
Confidence 21111 112111 22344444321 1 111 11223 33333322111 133333321
Q ss_pred CCCC-hhhHHHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 013415 353 EVVP-AETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMV 431 (443)
Q Consensus 353 ~~~~-~~~L~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a 431 (443)
.++ +...+-||.|+..... ...+ +..+ | . ++.+ ..+..||..+.+-|-+.|+..++..++.+|++.|
T Consensus 318 -lPd~~~R~~Il~~~~~~~~l-~~dv--dl~~-l-----A-~~t~-G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~A 385 (405)
T 4b4t_J 318 -PPSVAARAEILRIHSRKMNL-TRGI--NLRK-V-----A-EKMN-GCSGADVKGVCTEAGMYALRERRIHVTQEDFELA 385 (405)
T ss_dssp -CCCHHHHHHHHHHHHTTSBC-CSSC--CHHH-H-----H-HHCC-SCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHH
T ss_pred -CcCHHHHHHHHHHHhcCCCC-CccC--CHHH-H-----H-HHCC-CCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 222 2355677776543221 1111 1111 1 1 2222 4789999999999999999999999999999999
Q ss_pred HHH
Q 013415 432 KEL 434 (443)
Q Consensus 432 ~~L 434 (443)
++=
T Consensus 386 l~~ 388 (405)
T 4b4t_J 386 VGK 388 (405)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 39
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=58.12 E-value=95 Score=27.08 Aligned_cols=61 Identities=13% Similarity=0.057 Sum_probs=41.3
Q ss_pred HHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 361 EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 361 ~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
..++.++. ..+..+++++.++|.+.+ .. +.+.+..++..+-..|...| ..+|.++.+.+++
T Consensus 181 ~~l~~~~~---~~~~~~~~~~~~~l~~~~------~g--~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 181 AALQRRAA---MRGLQLPEDVGRFLLNRM------AR--DLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHH---HTTCCCCHHHHHHHHHHT------TT--CHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHH---HcCCCCCHHHHHHHHHHc------cC--CHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 44444443 345678888877775432 22 46888888887777776666 4699999988864
No 40
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.62 E-value=27 Score=36.08 Aligned_cols=186 Identities=20% Similarity=0.220 Sum_probs=97.3
Q ss_pred eEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEeeC---CcEEEEecCC-CC
Q 013415 209 LNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLAD---GSHLIIDETQ-LE 284 (443)
Q Consensus 209 Lnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa~---gT~lviDEt~-L~ 284 (443)
+.|.|+|| +-+..|.++++.-+-.. ++.++...|-+.. -.++.++..-+...|. -..+.|||.. +-
T Consensus 219 vLLyGPPG----TGKTlLAkAiA~e~~~~-fi~v~~s~l~sk~-----vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~ 288 (437)
T 4b4t_I 219 VILYGAPG----TGKTLLAKAVANQTSAT-FLRIVGSELIQKY-----LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIG 288 (437)
T ss_dssp EEEESSTT----TTHHHHHHHHHHHHTCE-EEEEESGGGCCSS-----SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSS
T ss_pred CceECCCC----chHHHHHHHHHHHhCCC-EEEEEHHHhhhcc-----CchHHHHHHHHHHHHHhcCCcEEEEehhhhhc
Confidence 88999998 66778888887765543 3446655554422 1222233333333332 4689999998 32
Q ss_pred cCc--ccccch-hHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCC-ccc-------CceeeeeccCCCCCCC
Q 013415 285 TGT--LNSTGV-ENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN-IVP-------ADLVIPFQPSSAASFE 353 (443)
Q Consensus 285 ~G~--L~~~Gv-~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~-~lp-------~D~~vpl~~~~~~~~~ 353 (443)
... -+..|- +-...+..++++- | .+ +-.-++ ++|.++.+-. +=| +|..|.+ .
T Consensus 289 ~~R~~~~~~~~~~~~~~l~~LL~~l----D-g~---~~~~~V-iVIaATNrpd~LDpALlRpGRfD~~I~v--------~ 351 (437)
T 4b4t_I 289 TKRYDSNSGGEREIQRTMLELLNQL----D-GF---DDRGDV-KVIMATNKIETLDPALIRPGRIDRKILF--------E 351 (437)
T ss_dssp CCCSCSSCSSCCHHHHHHHHHHHHH----H-HC---CCSSSE-EEEEEESCSTTCCTTSSCTTTEEEEECC--------C
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHh----h-Cc---CCCCCE-EEEEeCCChhhcCHHHhcCCceeEEEEc--------C
Confidence 211 111121 1122333444321 1 11 111112 3333443221 111 3333222 1
Q ss_pred CCC-hhhHHHHHHHHHHhccCCCcCChhH-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 013415 354 VVP-AETLEAWRWYLASVRSLPHSIESDM-QKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMV 431 (443)
Q Consensus 354 ~~~-~~~L~~~R~Yl~~~r~~~~~i~ee~-~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a 431 (443)
.++ +...+-|+.|+... .+++++ .+. +. +..+ ..+..|+..+.+-|-+.|+..++..++.+|+..|
T Consensus 352 lPd~~~R~~Il~~~l~~~-----~l~~dvdl~~-----LA-~~T~-GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~A 419 (437)
T 4b4t_I 352 NPDLSTKKKILGIHTSKM-----NLSEDVNLET-----LV-TTKD-DLSGADIQAMCTEAGLLALRERRMQVTAEDFKQA 419 (437)
T ss_dssp CCCHHHHHHHHHHHHTTS-----CBCSCCCHHH-----HH-HHCC-SCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCC-----CCCCcCCHHH-----HH-HhCC-CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 122 23456777766432 222221 111 11 2222 4789999999999999999999999999999998
Q ss_pred HH
Q 013415 432 KE 433 (443)
Q Consensus 432 ~~ 433 (443)
++
T Consensus 420 l~ 421 (437)
T 4b4t_I 420 KE 421 (437)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 41
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=56.66 E-value=98 Score=31.83 Aligned_cols=178 Identities=12% Similarity=0.140 Sum_probs=83.2
Q ss_pred eeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCc-c-cccCCCCcccccce--------EeeCCcEE
Q 013415 207 LSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLA-P-KKDYQTNRLIPGVL--------QLADGSHL 276 (443)
Q Consensus 207 ~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~-P-~kD~~~~~L~sG~L--------QLa~gT~l 276 (443)
-++-|+|.|| +-+..+...+..-+. ..++.++...+....+. . .+....+.-..|.+ .-..+..+
T Consensus 78 ~~lLL~GppG----tGKTtla~~la~~l~-~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (516)
T 1sxj_A 78 RAAMLYGPPG----IGKTTAAHLVAQELG-YDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVI 152 (516)
T ss_dssp SEEEEECSTT----SSHHHHHHHHHHHTT-CEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEE
T ss_pred cEEEEECCCC----CCHHHHHHHHHHHcC-CCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEE
Confidence 3789999998 556667666665553 23333332221110000 0 00000000011111 12457789
Q ss_pred EEecCC-CCcCcccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCC-CcccC----ceeeeeccCCCC
Q 013415 277 IIDETQ-LETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS-NIVPA----DLVIPFQPSSAA 350 (443)
Q Consensus 277 viDEt~-L~~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS-~~lp~----D~~vpl~~~~~~ 350 (443)
+|||.. |..+ ..+ .+.+|..+++.. +.++++++.... ..++. ...+.
T Consensus 153 iIDEid~l~~~---~~~--~l~~L~~~l~~~---------------~~~iIli~~~~~~~~l~~l~~r~~~i~------- 205 (516)
T 1sxj_A 153 IMDEVDGMSGG---DRG--GVGQLAQFCRKT---------------STPLILICNERNLPKMRPFDRVCLDIQ------- 205 (516)
T ss_dssp EECSGGGCCTT---STT--HHHHHHHHHHHC---------------SSCEEEEESCTTSSTTGGGTTTSEEEE-------
T ss_pred EEECCCccchh---hHH--HHHHHHHHHHhc---------------CCCEEEEEcCCCCccchhhHhceEEEE-------
Confidence 999997 5543 122 367788888752 456666665432 01111 11111
Q ss_pred CCCCCChhhHHHHHHHHHH-hccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 013415 351 SFEVVPAETLEAWRWYLAS-VRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQ 429 (443)
Q Consensus 351 ~~~~~~~~~L~~~R~Yl~~-~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~ 429 (443)
+.+++. +.++.+|.. +......+++++.+.|-+ ..+. ++..++.+.+.++. +...++.++..
T Consensus 206 -f~~~~~---~~~~~~L~~i~~~~~~~i~~~~l~~la~------~s~G-----diR~~i~~L~~~~~--~~~~It~~~v~ 268 (516)
T 1sxj_A 206 -FRRPDA---NSIKSRLMTIAIREKFKLDPNVIDRLIQ------TTRG-----DIRQVINLLSTIST--TTKTINHENIN 268 (516)
T ss_dssp -CCCCCH---HHHHHHHHHHHHHHTCCCCTTHHHHHHH------HTTT-----CHHHHHHHHTHHHH--HSSCCCTTHHH
T ss_pred -eCCCCH---HHHHHHHHHHHHHcCCCCCHHHHHHHHH------HcCC-----cHHHHHHHHHHHHh--cCCCCchHHHH
Confidence 122233 344444432 233356688887776632 2222 23333333333333 45667777766
Q ss_pred HHHH
Q 013415 430 MVKE 433 (443)
Q Consensus 430 ~a~~ 433 (443)
.+..
T Consensus 269 ~~~~ 272 (516)
T 1sxj_A 269 EISK 272 (516)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 42
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=56.49 E-value=1.1e+02 Score=28.24 Aligned_cols=52 Identities=10% Similarity=0.148 Sum_probs=33.6
Q ss_pred CCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCC------------CCCCHHHHHHHH
Q 013415 374 PHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGE------------TSLSLEHWQMVK 432 (443)
Q Consensus 374 ~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~------------~~lt~e~W~~a~ 432 (443)
...++++..+.|-. .. ...+..+|..++.-|-+.|...+. ..++.+|+..|+
T Consensus 206 ~~~~~~~~~~~la~------~~-~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~ 269 (297)
T 3b9p_A 206 GSPLDTEALRRLAK------IT-DGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSL 269 (297)
T ss_dssp SCCSCHHHHHHHHH------HT-TTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHT
T ss_pred CCCCCHHHHHHHHH------Hc-CCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHH
Confidence 44566665544422 22 246678888888877777766542 468888888774
No 43
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=55.77 E-value=67 Score=30.48 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=46.8
Q ss_pred CChhhH-HHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 355 VPAETL-EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 355 ~~~~~L-~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
++.+++ +.++.++..+ ..+..+++++.+.|.+.. ....=+.+.+..++..|-..|...|...++.+++..|..
T Consensus 201 l~~~~~~~il~~~~~~~-~~~~~~~~~~~~~l~~~~-----~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 201 YTAPQLRDILETRAEEA-FNPGVLDPDVVPLCAALA-----AREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp CCHHHHHHHHHHHHHHH-BCTTTBCSSHHHHHHHHH-----HSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh-ccCCCCCHHHHHHHHHHH-----HHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 344333 3445444422 135678888777764322 111124678888888888888888999999999998865
No 44
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=55.30 E-value=1.5e+02 Score=28.39 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=39.0
Q ss_pred eeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEe---eCCcEEEEecCC
Q 013415 207 LSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQL---ADGSHLIIDETQ 282 (443)
Q Consensus 207 ~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQL---a~gT~lviDEt~ 282 (443)
-.+.|.|.|| +-+..|.+.+..-+....++.++...+.... -.++......+++. ...+.|+|||..
T Consensus 46 ~~iLL~GppG----tGKT~la~ala~~~~~~~~~~i~~~~l~~~~-----~g~~~~~~~~lf~~a~~~~~~vl~iDEid 115 (322)
T 1xwi_A 46 RGILLFGPPG----TGKSYLAKAVATEANNSTFFSISSSDLVSKW-----LGESEKLVKNLFQLARENKPSIIFIDEID 115 (322)
T ss_dssp SEEEEESSSS----SCHHHHHHHHHHHTTSCEEEEEECCSSCCSS-----CCSCHHHHHHHHHHHHHTSSEEEEEETTT
T ss_pred ceEEEECCCC----ccHHHHHHHHHHHcCCCcEEEEEhHHHHhhh-----hhHHHHHHHHHHHHHHhcCCcEEEeecHH
Confidence 3688999998 5677777777776655555555544433211 11112222222222 245789999998
No 45
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.82 E-value=66 Score=33.42 Aligned_cols=187 Identities=13% Similarity=0.160 Sum_probs=96.9
Q ss_pred eeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEee---CCcEEEEecCC-C
Q 013415 208 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLA---DGSHLIIDETQ-L 283 (443)
Q Consensus 208 sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa---~gT~lviDEt~-L 283 (443)
-+.|.|+|| +-+..|.+.++.-+-.. ++.++...|-+.. -.++.+...-+.+.| ....++|||.. +
T Consensus 245 GILLyGPPG----TGKTlLAkAiA~e~~~~-fi~vs~s~L~sk~-----vGesek~ir~lF~~Ar~~aP~IIfiDEiDai 314 (467)
T 4b4t_H 245 GILLYGPPG----TGKTLCARAVANRTDAT-FIRVIGSELVQKY-----VGEGARMVRELFEMARTKKACIIFFDEIDAV 314 (467)
T ss_dssp EEEECSCTT----SSHHHHHHHHHHHHTCE-EEEEEGGGGCCCS-----SSHHHHHHHHHHHHHHHTCSEEEEEECCTTT
T ss_pred ceEeeCCCC----CcHHHHHHHHHhccCCC-eEEEEhHHhhccc-----CCHHHHHHHHHHHHHHhcCCceEeecccccc
Confidence 377999998 56777777777665443 4446666554422 112223333333333 25689999998 3
Q ss_pred CcCccc-ccc-hhH-HHHHHHHHHhCeeeeeecccceeeeeccceE-EeecCCCCcc-c-------CceeeeeccCCCCC
Q 013415 284 ETGTLN-STG-VEN-ARLLKNLMEFQKVEYNFEYYKMEMIADVQML-ILSEGKSNIV-P-------ADLVIPFQPSSAAS 351 (443)
Q Consensus 284 ~~G~L~-~~G-v~N-~~aL~~li~~Q~v~YdF~y~~~e~~~di~vl-iLS~gKS~~l-p-------~D~~vpl~~~~~~~ 351 (443)
-...-+ ..| ... ...+..++.+- | . +...-+|+ |.++.+-..+ | +|..|.+.
T Consensus 315 ~~~R~~~~~~~~~~~~~~l~~lL~~l----D-g-----~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~------ 378 (467)
T 4b4t_H 315 GGARFDDGAGGDNEVQRTMLELITQL----D-G-----FDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFS------ 378 (467)
T ss_dssp SBCCSSSSCGGGGHHHHHHHHHHHHH----H-S-----SCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCC------
T ss_pred cccccCcCCCccHHHHHHHHHHHHHh----h-c-----cCCCCcEEEEeCCCCcccCChhhhccccccEEEEeC------
Confidence 221111 111 111 22333333311 1 1 11122333 3344332111 1 33333331
Q ss_pred CCCCC-hhhHHHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 013415 352 FEVVP-AETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQM 430 (443)
Q Consensus 352 ~~~~~-~~~L~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~ 430 (443)
.++ +...+.||.|+..... ...++ . +. +. ++.. ..+..||..+.+-|-+.|+..++..++.+|+..
T Consensus 379 --lPd~~~R~~Ilk~~l~~~~l-~~dvd--l-~~-----LA-~~T~-GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~ 445 (467)
T 4b4t_H 379 --LPDLEGRANIFRIHSKSMSV-ERGIR--W-EL-----IS-RLCP-NSTGAELRSVCTEAGMFAIRARRKVATEKDFLK 445 (467)
T ss_dssp --CCCHHHHHHHHHHHHTTSCB-CSSCC--H-HH-----HH-HHCC-SCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHH
T ss_pred --CcCHHHHHHHHHHHhcCCCC-CCCCC--H-HH-----HH-HHCC-CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 122 2355677766543221 11221 1 11 22 2232 478999999999999999999999999999998
Q ss_pred HHH
Q 013415 431 VKE 433 (443)
Q Consensus 431 a~~ 433 (443)
|++
T Consensus 446 Al~ 448 (467)
T 4b4t_H 446 AVD 448 (467)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 46
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.27 E-value=45 Score=34.24 Aligned_cols=187 Identities=14% Similarity=0.168 Sum_probs=98.6
Q ss_pred eeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEee---CCcEEEEecCC-C
Q 013415 208 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLA---DGSHLIIDETQ-L 283 (443)
Q Consensus 208 sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa---~gT~lviDEt~-L 283 (443)
-+.|.|+|| +-+..|.+.++.-+-.. ++.++...+-+ +.-.++.++..-+...| ....+.|||.. +
T Consensus 217 GvLL~GPPG----tGKTllAkAiA~e~~~~-~~~v~~s~l~s-----k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai 286 (437)
T 4b4t_L 217 GVLLYGPPG----TGKTLLAKAVAATIGAN-FIFSPASGIVD-----KYIGESARIIREMFAYAKEHEPCIIFMDEVDAI 286 (437)
T ss_dssp EEEEESCTT----SSHHHHHHHHHHHHTCE-EEEEEGGGTCC-----SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSS
T ss_pred eEEEECCCC----CcHHHHHHHHHHHhCCC-EEEEehhhhcc-----ccchHHHHHHHHHHHHHHhcCCceeeeeccccc
Confidence 378999998 66777777777665443 34456555543 22222223333333333 35789999998 3
Q ss_pred CcC----cccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCC-----c-cc--CceeeeeccCCCCC
Q 013415 284 ETG----TLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN-----I-VP--ADLVIPFQPSSAAS 351 (443)
Q Consensus 284 ~~G----~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~-----~-lp--~D~~vpl~~~~~~~ 351 (443)
-.. .-...+ .-...+..++.+- | .+.. .+--++|.++.+-. + -| +|..|.+.
T Consensus 287 ~~~R~~~~~~~~~-~~~~~l~~lL~~l----D-g~~~----~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~------ 350 (437)
T 4b4t_L 287 GGRRFSEGTSADR-EIQRTLMELLTQM----D-GFDN----LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIP------ 350 (437)
T ss_dssp SCCCSSSCCSSTT-HHHHHHHHHHHHH----H-SSSC----TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCC------
T ss_pred ccccccCCCCcch-HHHHHHHHHHHHh----h-cccC----CCCeEEEEecCCchhhCHHHhCCCccceeeecC------
Confidence 211 111111 1122233333311 1 1111 11123444443321 1 12 44444332
Q ss_pred CCCCC-hhhHHHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 013415 352 FEVVP-AETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQM 430 (443)
Q Consensus 352 ~~~~~-~~~L~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~ 430 (443)
.++ +...+.|+.|+...... ..+ +... | . +..+ ..+..||..+.+-|-+.|+..++..++.+|+..
T Consensus 351 --lPd~~~R~~Il~~~~~~~~~~-~d~--dl~~-l-----A-~~t~-G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~ 417 (437)
T 4b4t_L 351 --LPNEAGRLEIFKIHTAKVKKT-GEF--DFEA-A-----V-KMSD-GFNGADIRNCATEAGFFAIRDDRDHINPDDLMK 417 (437)
T ss_dssp --CCCHHHHHHHHHHHHHTSCBC-SCC--CHHH-H-----H-HTCC-SCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred --CcCHHHHHHHHHHHhcCCCCC-ccc--CHHH-H-----H-HhCC-CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 112 34567788887654322 111 1111 1 1 2222 478999999999999999999999999999998
Q ss_pred HHH
Q 013415 431 VKE 433 (443)
Q Consensus 431 a~~ 433 (443)
|++
T Consensus 418 Al~ 420 (437)
T 4b4t_L 418 AVR 420 (437)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 47
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=50.59 E-value=6.1 Score=38.69 Aligned_cols=133 Identities=15% Similarity=0.126 Sum_probs=73.7
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhccccccc-----CceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeee
Q 013415 169 LLRHLTSILGNDGIAAHLMLLHLLSRVHARI-----DNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLT 243 (443)
Q Consensus 169 Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~-----d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lplt 243 (443)
+...|...+.|..-+.+.+...+........ .......-++.|.|.|| +-++.+.+.|...+. ..++.++
T Consensus 9 l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppG----tGKT~la~~ia~~~~-~~~~~~~ 83 (363)
T 3hws_A 9 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTG----SGKTLLAETLARLLD-VPFTMAD 83 (363)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTT----SSHHHHHHHHHHHTT-CCEEEEE
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCC----CCHHHHHHHHHHHcC-CCEEEec
Confidence 5556677778898888888776643322211 12233456899999998 567777777777663 3445555
Q ss_pred hhhhhcCCCccc--ccCCCC--cccccceEeeCCcEEEEecCC-CCcCcccc------cchhHHHHHHHHHHhC
Q 013415 244 VNYLNTASLAPK--KDYQTN--RLIPGVLQLADGSHLIIDETQ-LETGTLNS------TGVENARLLKNLMEFQ 306 (443)
Q Consensus 244 l~~LN~~~l~P~--kD~~~~--~L~sG~LQLa~gT~lviDEt~-L~~G~L~~------~Gv~N~~aL~~li~~Q 306 (443)
...+....+.-. ...-++ .-..|.+..++++.|+|||.. |....-+. .|-.-..+|-.+|+..
T Consensus 84 ~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 84 ATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp HHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC
T ss_pred hHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCc
Confidence 555433211100 000000 012233444678899999998 54321111 0111377888888833
No 48
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=47.11 E-value=2.4e+02 Score=29.25 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 399 LGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 399 it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
.+..||..++.-|-++|...|...++.++.+.|++
T Consensus 235 ~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~ 269 (499)
T 2dhr_A 235 FVGADLENLLNEAALLAAREGRRKITMKDLEEAAD 269 (499)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 56789999999888888888888999999988865
No 49
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.53 E-value=57 Score=33.45 Aligned_cols=187 Identities=14% Similarity=0.168 Sum_probs=100.1
Q ss_pred eeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEee---CCcEEEEecCC-C
Q 013415 208 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLA---DGSHLIIDETQ-L 283 (443)
Q Consensus 208 sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa---~gT~lviDEt~-L 283 (443)
-+.|.|+|| +-+..|.+.++.-+-. .++.++...|-+.. -.++.++..-+.+.| ....+.|||.. +
T Consensus 217 GvLLyGPPG----TGKTllAkAiA~e~~~-~f~~v~~s~l~~~~-----vGese~~ir~lF~~A~~~aP~IifiDEiDal 286 (434)
T 4b4t_M 217 GALMYGPPG----TGKTLLARACAAQTNA-TFLKLAAPQLVQMY-----IGEGAKLVRDAFALAKEKAPTIIFIDELDAI 286 (434)
T ss_dssp EEEEESCTT----SSHHHHHHHHHHHHTC-EEEEEEGGGGCSSC-----SSHHHHHHHHHHHHHHHHCSEEEEEECTHHH
T ss_pred eeEEECcCC----CCHHHHHHHHHHHhCC-CEEEEehhhhhhcc-----cchHHHHHHHHHHHHHhcCCeEEeecchhhh
Confidence 478999998 6677788888776554 34446666554422 122223333333333 25789999987 3
Q ss_pred CcC--cccccchhHH-HHHHHHHHhCeeeeeecccceeeeeccceEEe-ecCCCCcc------c--CceeeeeccCCCCC
Q 013415 284 ETG--TLNSTGVENA-RLLKNLMEFQKVEYNFEYYKMEMIADVQMLIL-SEGKSNIV------P--ADLVIPFQPSSAAS 351 (443)
Q Consensus 284 ~~G--~L~~~Gv~N~-~aL~~li~~Q~v~YdF~y~~~e~~~di~vliL-S~gKS~~l------p--~D~~vpl~~~~~~~ 351 (443)
-.. .-...|-... ..+..++++- | .+ ..+-+|+|+ +..+-..+ | +|..|.+.
T Consensus 287 ~~~R~~~~~~~~~~~~~~~~~lL~~l----d-g~-----~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~------ 350 (434)
T 4b4t_M 287 GTKRFDSEKSGDREVQRTMLELLNQL----D-GF-----SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFP------ 350 (434)
T ss_dssp HCCCSSGGGGTTHHHHHHHHHHHHHH----T-TS-----CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECC------
T ss_pred hhccCCCCCCCchHHHHHHHHHHHHh----h-cc-----CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeC------
Confidence 211 1112222222 2333344321 1 11 112233333 44332111 1 33333332
Q ss_pred CCCCC-hhhHHHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 013415 352 FEVVP-AETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQM 430 (443)
Q Consensus 352 ~~~~~-~~~L~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~ 430 (443)
.++ +...+-|+.|+...... ..++ . +.| . ++.+ ..+..||..+.+-|-+.|+..|+..++.+|+..
T Consensus 351 --lPd~~~R~~Il~~~~~~~~~~-~dvd--l-~~l-----A-~~t~-G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~ 417 (434)
T 4b4t_M 351 --LPSEDSRAQILQIHSRKMTTD-DDIN--W-QEL-----A-RSTD-EFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVE 417 (434)
T ss_dssp --CCCHHHHHHHHHHHHHHSCBC-SCCC--H-HHH-----H-HHCS-SCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHH
T ss_pred --CcCHHHHHHHHHHHhcCCCCC-CcCC--H-HHH-----H-HhCC-CCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 122 23567788777654321 1221 1 111 1 2222 478999999999999999999999999999999
Q ss_pred HHH
Q 013415 431 VKE 433 (443)
Q Consensus 431 a~~ 433 (443)
|++
T Consensus 418 Al~ 420 (434)
T 4b4t_M 418 GIS 420 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 50
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=41.85 E-value=78 Score=33.00 Aligned_cols=200 Identities=13% Similarity=0.147 Sum_probs=85.6
Q ss_pred eeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCC-Cccc-ccCCCCcccccc---eEee--CCcEEEEec
Q 013415 208 SLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTAS-LAPK-KDYQTNRLIPGV---LQLA--DGSHLIIDE 280 (443)
Q Consensus 208 sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~-l~P~-kD~~~~~L~sG~---LQLa--~gT~lviDE 280 (443)
++.|.|.|+ +-++.|.+.|...+... +..+...++.... +... +.| .+...... +..+ .++.++|||
T Consensus 110 ~vll~Gp~G----tGKTtlar~ia~~l~~~-~~~i~~~~~~~~~~~~g~~~~~-ig~~~~~~~~~~~~a~~~~~vl~lDE 183 (543)
T 3m6a_A 110 ILCLAGPPG----VGKTSLAKSIAKSLGRK-FVRISLGGVRDESEIRGHRRTY-VGAMPGRIIQGMKKAGKLNPVFLLDE 183 (543)
T ss_dssp EEEEESSSS----SSHHHHHHHHHHHHTCE-EEEECCCC---------------------CHHHHHHTTCSSSEEEEEEE
T ss_pred EEEEECCCC----CCHHHHHHHHHHhcCCC-eEEEEecccchhhhhhhHHHHH-hccCchHHHHHHHHhhccCCEEEEhh
Confidence 688999998 56778888887777543 2234433332211 1000 111 11111111 1122 567999999
Q ss_pred CC-CCcCcccccchhHHHHHHHHHHh-CeeeeeecccceeeeeccceEEeecCCCCccc------CceeeeeccCCCCCC
Q 013415 281 TQ-LETGTLNSTGVENARLLKNLMEF-QKVEYNFEYYKMEMIADVQMLILSEGKSNIVP------ADLVIPFQPSSAASF 352 (443)
Q Consensus 281 t~-L~~G~L~~~Gv~N~~aL~~li~~-Q~v~YdF~y~~~e~~~di~vliLS~gKS~~lp------~D~~vpl~~~~~~~~ 352 (443)
.. |.... . | .-..+|-.+++. |.-.|.=.|....++..--++|.+.....-++ ++ .+. +
T Consensus 184 id~l~~~~-~--~-~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~-vi~--------~ 250 (543)
T 3m6a_A 184 IDKMSSDF-R--G-DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRME-IIN--------I 250 (543)
T ss_dssp SSSCC-------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-EEE--------C
T ss_pred hhhhhhhh-c--c-CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcc-eee--------e
Confidence 87 43321 0 0 012344444432 11112112323333322234444443331222 11 111 1
Q ss_pred CCCCh-hhHHHHHHHHHHh--c---c--CCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHH----HHHHHHHHc--
Q 013415 353 EVVPA-ETLEAWRWYLASV--R---S--LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLT----MGRLMSASF-- 418 (443)
Q Consensus 353 ~~~~~-~~L~~~R~Yl~~~--r---~--~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~----LaRllAlS~-- 418 (443)
..++. +....++.|+..- + . ..+.+++++.+.|-+.| +..-+.++|.+.+. .+-..++..
T Consensus 251 ~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~------~~~~~vR~L~~~i~~~~~~aa~~~~~~~~ 324 (543)
T 3m6a_A 251 AGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY------TREAGVRSLERQLAAICRKAAKAIVAEER 324 (543)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH------CCCSSSHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC------ChhhchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 22233 4456677776331 1 1 14567888887775544 22334566654443 222222222
Q ss_pred CCCCCCHHHHHHHH
Q 013415 419 GETSLSLEHWQMVK 432 (443)
Q Consensus 419 G~~~lt~e~W~~a~ 432 (443)
+...++.++.+.++
T Consensus 325 ~~~~It~~~l~~~L 338 (543)
T 3m6a_A 325 KRITVTEKNLQDFI 338 (543)
T ss_dssp SCCEECTTTTHHHH
T ss_pred cceecCHHHHHHHh
Confidence 34467777766654
No 51
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=40.84 E-value=2e+02 Score=29.56 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 398 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 398 ~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
..+..||..++.-|.++|...|...++.+++..|+.
T Consensus 219 G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~ 254 (476)
T 2ce7_A 219 GFVGADLENLVNEAALLAAREGRDKITMKDFEEAID 254 (476)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 356799999999999999999999999999998875
No 52
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=38.71 E-value=1.3e+02 Score=26.52 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHH-HHHHHHHHHHHHcCC-CCCCHHHHHHHHHH
Q 013415 358 ETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLS-RLLTMGRLMSASFGE-TSLSLEHWQMVKEL 434 (443)
Q Consensus 358 ~~L~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~-~~L~LaRllAlS~G~-~~lt~e~W~~a~~L 434 (443)
.+++-+..|++..=-++..+++|+.+..-+ -.. ..+.+||.....+++ .....|+|++|.++
T Consensus 80 iel~pil~~la~~PPld~~~~~e~e~~lP~---------------I~GgL~v~lArv~K~l~pe~rnp~~eh~E~a~~v 143 (148)
T 1wwi_A 80 LELKPVLDALAALPPLDLEVAEDVRNLLPE---------------LAGALVVAYARVLKELDPALKNPQTEHHERAERV 143 (148)
T ss_dssp CCHHHHHHHHHTSCCCSSEECHHHHHHHHH---------------HHHHHHHHHHHHHHHHSTTCSSCCHHHHHHHHHH
T ss_pred cchHHHHHHHHhCCCCCCChhHHHHHHHHH---------------HHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHH
Confidence 467788888886444567778876555422 222 246789999999988 89999999999765
No 53
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=36.19 E-value=50 Score=24.86 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 013415 398 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELE 435 (443)
Q Consensus 398 ~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~LE 435 (443)
..|..|+..+.+-|-+.|+..|...++.+|+..|++=-
T Consensus 36 G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 36 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999997643
No 54
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=33.26 E-value=1.4e+02 Score=22.76 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=36.6
Q ss_pred ccCCC-cCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 371 RSLPH-SIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 371 r~~~~-~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
++.+. .+++++.+.+-+|- + .-++.++.=|--+++-.|+++|+.+|.+.|+++
T Consensus 17 es~Gi~~lsddaa~~LA~dv-E----------yr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 17 ESIGVGSLSDDAAKELAEDV-S----------IKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHTTCCCBCHHHHHHHHHHH-H----------HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHCCCCCCCHHHHHHHHHHH-H----------HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 34444 78899888876653 3 334445555556777889999999999998753
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=31.97 E-value=1.7e+02 Score=28.00 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=43.0
Q ss_pred cCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 372 SLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 372 ~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
.....+++++.++|- ++... +.+...++|..++..|...|...+|.++.+.|++.
T Consensus 195 ~~~~~~~~~~~~~ia------~~~~G--~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~ 249 (334)
T 1in4_A 195 LMDVEIEDAAAEMIA------KRSRG--TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEV 249 (334)
T ss_dssp HTTCCBCHHHHHHHH------HTSTT--CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HcCCCcCHHHHHHHH------HhcCC--ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 346778888877662 33333 46899999999999999999999999999988764
No 56
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=30.52 E-value=82 Score=24.47 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 398 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 398 ~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
..+..||..+.+-|-+.|+..+...++.+|+..|++
T Consensus 34 G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 34 NSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVD 69 (88)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 478999999999999999999999999999999975
No 57
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=27.90 E-value=1.4e+02 Score=27.61 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=19.0
Q ss_pred eCCcEEEEecCC-CCcCcccccchhHHHHHHHHHHh
Q 013415 271 ADGSHLIIDETQ-LETGTLNSTGVENARLLKNLMEF 305 (443)
Q Consensus 271 a~gT~lviDEt~-L~~G~L~~~Gv~N~~aL~~li~~ 305 (443)
+++..++|||.. |.. .-..+|..+++.
T Consensus 109 ~~~~vliiDe~~~l~~--------~~~~~L~~~le~ 136 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ--------DAQQALRRTMEM 136 (327)
T ss_dssp CSCEEEEEETGGGSCH--------HHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCcCCH--------HHHHHHHHHHHh
Confidence 567899999986 332 235678888875
No 58
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=26.76 E-value=4e+02 Score=25.02 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=37.9
Q ss_pred HHHHHHHHHhccCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 361 EAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 361 ~~~R~Yl~~~r~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
+.++.++... .....+++++.+.|.+.. ....=+.+.+..++..|-.+|. |...++.++|..+++
T Consensus 204 ~il~~~~~~~-~~~~~~~~~~~~~i~~~~-----~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~ 268 (384)
T 2qby_B 204 FILSKYAEYG-LIKGTYDDEILSYIAAIS-----AKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIV 268 (384)
T ss_dssp HHHHHHHHHT-SCTTSCCSHHHHHHHHHH-----HTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHH
T ss_pred HHHHHHHHhh-cccCCcCHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHH
Confidence 4455554421 124578888877765422 1111234555556665554444 778999999998864
No 59
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=26.55 E-value=74 Score=26.84 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=24.2
Q ss_pred CCCcEE-EEEEcCCC-------CCcccCcEEEEEEEeec
Q 013415 71 NSLPCL-VKIYDCPE-------SELKLNEVFEFVGVLTL 101 (443)
Q Consensus 71 ~~~~cl-VKvYd~~~-------~~lKlNdvve~vGILs~ 101 (443)
.++++| +|+|++.+ ..|++|+.|.+.|-+..
T Consensus 61 D~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~ 99 (136)
T 4gop_B 61 DGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKS 99 (136)
T ss_dssp CSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEE
T ss_pred CCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEE
Confidence 677777 89997532 36999999999999864
No 60
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=25.72 E-value=92 Score=24.22 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 398 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 398 ~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
..|..||..+.+=|-+.|+..+...++.+++..|++
T Consensus 44 G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~ 79 (86)
T 2krk_A 44 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 79 (86)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 588999999999999999999999999999999875
No 61
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=25.31 E-value=97 Score=23.56 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 398 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 398 ~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
..+..||..+.+-|-+.|+..+...++.+|+..|++
T Consensus 31 G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~ 66 (82)
T 2dzn_B 31 SLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYA 66 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 478999999999999999999999999999998865
No 62
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=24.50 E-value=68 Score=26.91 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=21.5
Q ss_pred HHHHHHH-HHcCCCCCCHHHHHHHHHH
Q 013415 409 TMGRLMS-ASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 409 ~LaRllA-lS~G~~~lt~e~W~~a~~L 434 (443)
-+|+.+| ...|=.+||.+||+.+.-|
T Consensus 33 evA~~lA~~~egI~eLTe~HW~VI~fl 59 (111)
T 1ji8_A 33 KVAEWLARELEGIQKMTEEHWKLVKYL 59 (111)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchhcCHHHHHHHHHH
Confidence 3678899 8888879999999987654
No 63
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=22.88 E-value=54 Score=27.19 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 409 TMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 409 ~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
-+|+.+|...|=.+||.+||+.+.-|
T Consensus 28 e~A~~lA~~egI~eLTe~HW~vI~fl 53 (105)
T 3or1_C 28 EWVKYAKGSEGIGAGSADHQKIIDFL 53 (105)
T ss_dssp HHHHHHGGGGTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCHHHHHHHHHH
Confidence 36788999999889999999987665
No 64
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=22.16 E-value=90 Score=28.07 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 013415 407 LLTMGRLMSASFGETSLSLEHWQMVKEL 434 (443)
Q Consensus 407 ~L~LaRllAlS~G~~~lt~e~W~~a~~L 434 (443)
.+.+||.....+++.....|+|++|.++
T Consensus 139 ~valARv~K~l~Pernp~~ehwE~a~~v 166 (171)
T 1r4v_A 139 LLMHADVIKKATGERKPSREAMEFVAQI 166 (171)
T ss_dssp HHHHHHHHHHHCCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 4678999999999999999999999765
No 65
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=21.69 E-value=90 Score=23.61 Aligned_cols=36 Identities=6% Similarity=0.183 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 013415 398 SLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKE 433 (443)
Q Consensus 398 ~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~ 433 (443)
..+..|+..+.+=|-+.|+..+...++.+|+..|++
T Consensus 34 G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 34 KISGADINSICQESGMLAVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp CCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 588999999999999999999999999999998865
No 66
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=20.91 E-value=1.2e+02 Score=28.62 Aligned_cols=67 Identities=15% Similarity=0.021 Sum_probs=37.4
Q ss_pred eeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEee-------CCcEEEE
Q 013415 206 KLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLA-------DGSHLII 278 (443)
Q Consensus 206 ~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa-------~gT~lvi 278 (443)
...+.|.|.|| +-+..|.+.+..-+- ..++.++...|.+... ..........+..+ .+..|+|
T Consensus 36 p~~lLl~GppG----tGKT~la~aiA~~l~-~~~i~v~~~~l~~~~~-----g~~~~~i~~~f~~a~~~~~~~~~~vl~i 105 (293)
T 3t15_A 36 PLILGIWGGKG----QGKSFQCELVFRKMG-INPIMMSAGELESGNA-----GEPAKLIRQRYREAAEIIRKGNMCCLFI 105 (293)
T ss_dssp CSEEEEEECTT----SCHHHHHHHHHHHHT-CCCEEEEHHHHHCC--------HHHHHHHHHHHHHHHHHTTSSCCCEEE
T ss_pred CeEEEEECCCC----CCHHHHHHHHHHHhC-CCEEEEeHHHhhhccC-----chhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 34578899998 556666666665543 3344466555544211 00111222333333 5789999
Q ss_pred ecCC
Q 013415 279 DETQ 282 (443)
Q Consensus 279 DEt~ 282 (443)
||..
T Consensus 106 DEiD 109 (293)
T 3t15_A 106 NDLD 109 (293)
T ss_dssp ECCC
T ss_pred echh
Confidence 9996
Done!