BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013416
         (443 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54E21|RFC2_DICDI Probable replication factor C subunit 2 OS=Dictyostelium discoideum
           GN=rfc2 PE=3 SV=1
          Length = 338

 Score = 35.0 bits (79), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 341 RTSVSLFRFGENSESHTRTKMEEIWTIEEVDFNIEGLSMDCFLPPGDLRK 390
           ++  ++ RF   S+S   T++ E+  IE+V +  +GL+   F   GD+R+
Sbjct: 166 QSRCAVLRFTRLSDSQILTRLREVVQIEKVPYTDDGLAAIIFTAEGDMRQ 215


>sp|Q18E75|RFCS_HALWD Replication factor C small subunit OS=Haloquadratum walsbyi (strain
           DSM 16790) GN=rfcS PE=3 SV=1
          Length = 649

 Score = 35.0 bits (79), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 320 TMESLIQDYRFIDGIN----VAHTGRTSVSLFRFGENSESHTRTKMEEIWTIEEVDFNIE 375
           TME    + RFI   N    +    ++  ++FRF   SE+  R + ++I   E ++   +
Sbjct: 457 TMEQFADNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSETAIRGQTKDIAAAENIELTED 516

Query: 376 GLSMDCFLPPGDLRK 390
           GL    +   GD+R+
Sbjct: 517 GLDALVYAAGGDMRR 531


>sp|P04669|FER_SILPR Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1
          Length = 146

 Score = 33.9 bits (76), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 15/110 (13%)

Query: 336 VAHTGRTSVSLFRFGENSESHTRTKMEEIWTIEEVDFNIEGLSMDCFLPPGD---LRKEE 392
           VA +  T++    FG  + S  R      + +  +      ++ DC   P D   L + E
Sbjct: 22  VASSLPTNMGQALFGLKAGSRGRVTAMATYKVTLITKESGTVTFDC---PDDVYVLDQAE 78

Query: 393 DHGCDVITSNPKLPFKIRAASFRVSASKVVAIDAEYSDDSTEYVDDDEEE 442
           + G D       LP+  RA S    A KVVA   + SD S  ++DDD+ E
Sbjct: 79  EEGID-------LPYSCRAGSCSSCAGKVVAGSVDQSDQS--FLDDDQIE 119


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.133    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,913,212
Number of Sequences: 539616
Number of extensions: 7516357
Number of successful extensions: 19686
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 19685
Number of HSP's gapped (non-prelim): 8
length of query: 443
length of database: 191,569,459
effective HSP length: 121
effective length of query: 322
effective length of database: 126,275,923
effective search space: 40660847206
effective search space used: 40660847206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)