Query 013416
Match_columns 443
No_of_seqs 96 out of 98
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 03:38:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04788 DUF620: Protein of un 100.0 9E-134 2E-138 950.1 22.7 244 133-385 1-245 (245)
2 PF09865 DUF2092: Predicted pe 88.2 2.2 4.8E-05 41.2 8.0 91 177-268 45-152 (214)
3 COG2834 LolA Outer membrane li 74.4 13 0.00028 35.0 7.3 105 175-300 61-171 (211)
4 PRK09455 rseB anti-sigma E fac 61.0 8 0.00017 39.3 3.2 42 246-299 131-172 (319)
5 PF03888 MucB_RseB: MucB/RseB 35.5 47 0.001 33.1 4.0 41 246-298 99-139 (285)
6 PF14371 DUF4412: Domain of un 34.6 54 0.0012 26.2 3.5 17 247-263 4-20 (89)
7 KOG0968 DNA polymerase zeta, c 30.1 2.5 5.3E-05 50.1 -6.5 82 276-374 758-842 (1488)
8 smart00392 PROF Profilin. Bind 27.6 83 0.0018 27.6 3.8 64 196-273 21-85 (129)
9 COG5017 Uncharacterized conser 26.6 22 0.00048 33.7 0.1 22 317-342 55-76 (161)
10 PF03043 Herpes_UL87: Herpesvi 24.8 19 0.0004 39.8 -0.9 69 298-373 337-406 (538)
11 cd06911 VirB9_CagX_TrbG VirB9/ 20.8 3E+02 0.0066 22.5 5.7 43 298-340 22-67 (86)
12 PHA03374 hypothetical protein; 20.2 26 0.00055 39.8 -1.0 69 298-373 519-588 (730)
No 1
>PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins.
Probab=100.00 E-value=9.2e-134 Score=950.09 Aligned_cols=244 Identities=73% Similarity=1.254 Sum_probs=235.7
Q ss_pred EEEeeeEEEEEEeeccCCCcccchheeccccccCCCccccccEEEEEecCCeEEEEEEeeCcEEEEccCCceeeeecCCC
Q 013416 133 MYAMGKVKMAASEFCAGEGSLNDRLVKVRHLKKGVGGGEMGGFVLWQKRPDLWCLELVVSGRKISAGSDGKLAWRQTPWH 212 (443)
Q Consensus 133 myA~GkVrM~~~e~~~g~~~~~~~~~~~~~~~~g~~~~e~GgFVlWQ~~Pd~W~~ELvV~G~KV~AGsDGkvaWRhtPw~ 212 (443)
|||||||||.++||++|+..++. ..+++.+|+||||||||+|||||+||||+|+||+||||||||||||||+
T Consensus 1 mya~GkVrM~~se~~~~~~~~~~--------~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWR~Tpw~ 72 (245)
T PF04788_consen 1 MYAMGKVRMAASEFEGGSGSVTK--------VGPTGGGEKGGFVLWQMNPDMWYLELVVGGCKVSAGSDGKVAWRHTPWQ 72 (245)
T ss_pred CceeeeEEEEEEeeccCCccccc--------cccCcccccccEEEEEeCCCeEEEEEEecceEEeeccCCeeeeecCccc
Confidence 89999999999999988766541 1237789999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCchhhhhhccCCCcchhhcccccceeeeeeeeCCccceeEEeecchhhHhhhcCCCeeEEEeeeeecccccc
Q 013416 213 HSHASRGPPRPLRRFLQGLDPRSTANLFSNSVLCVMEKTINNEDCFILKVEAEASALRARSTSNVEIIRHTVWGYFSQRT 292 (443)
Q Consensus 213 ~sHAakGppRPLRR~lQGLDPr~tA~lF~~A~~cvGEk~I~geDCFiLKL~ad~~~l~ars~~~~EiIrH~~~GYFSQrT 292 (443)
++||+|||||||||+||||||++||+||++|+ |||||+|||||||||||+||+++|++||++++|||||++||||||||
T Consensus 73 g~HAakGp~RPLRR~lQGLDPr~ta~lF~~A~-cvGEk~i~gedCFvLkl~ad~~~l~ars~~~~EiirH~~~GYFSQrt 151 (245)
T PF04788_consen 73 GSHAAKGPPRPLRRFLQGLDPRSTANLFSNAV-CVGEKRINGEDCFVLKLEADPSALKARSSGNAEIIRHTLWGYFSQRT 151 (245)
T ss_pred cchhhcCCCchHHHHHhhcChhhHHHhhhhce-EeeeeccCCcccEEEEeeCCHHHHhhhcCCCcEEEEEeeeccccccc
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ceeEEeeceeeeeeecC-CCCCceEEeeccccccccceeccceeeecCCcceEEEEeecCCcccccccceeeeeeeeeee
Q 013416 293 GLLVQLKDSHLLRIKTP-GNNNSIFWETTMESLIQDYRFIDGINVAHTGRTSVSLFRFGENSESHTRTKMEEIWTIEEVD 371 (443)
Q Consensus 293 GLLv~lEDs~L~riq~~-~~g~~vyWETtieS~i~DYR~VdGi~IAH~G~t~vtl~RfGe~~~~h~~TrmEE~WtIeev~ 371 (443)
|||||||||||||||+. +++++|||||||||+|+|||+||||||||+|+|+||||||||++++|+||||||+|+|||||
T Consensus 152 GLLv~lEDS~L~ri~~~~~~~~~vyWETt~es~i~DYR~Vdgv~IAH~G~t~vtl~RfGe~~~~h~rTrmEE~W~Ieev~ 231 (245)
T PF04788_consen 152 GLLVQLEDSHLTRIQSGRPGGDAVYWETTMESSIEDYRAVDGVNIAHSGRTVVTLFRFGENSMSHSRTRMEETWTIEEVD 231 (245)
T ss_pred ceeeeeecceeEEeeecCCCCCceEEEEeecccccccccccceeeeccCCceEEEEecccccccCceeeEeeeeEeeeEE
Confidence 99999999999999993 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCccccCCC
Q 013416 372 FNIEGLSMDCFLPP 385 (443)
Q Consensus 372 FNV~GLS~DcFiPP 385 (443)
||||||||||||||
T Consensus 232 FNV~GLS~DcFiPP 245 (245)
T PF04788_consen 232 FNVPGLSMDCFIPP 245 (245)
T ss_pred eccCCcchhcccCC
Confidence 99999999999999
No 2
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=88.21 E-value=2.2 Score=41.19 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=66.4
Q ss_pred EEEecCCeEEEEEEeeCcEEEEccCCceeeeecCCCcCccCCCCCch----hhhhhccCCCcch-hhccc----------
Q 013416 177 LWQKRPDLWCLELVVSGRKISAGSDGKLAWRQTPWHHSHASRGPPRP----LRRFLQGLDPRST-ANLFS---------- 241 (443)
Q Consensus 177 lWQ~~Pd~W~~ELvV~G~KV~AGsDGkvaWRhtPw~~sHAakGppRP----LRR~lQGLDPr~t-A~lF~---------- 241 (443)
+|-.+||..++++.=++.....=+|||...-..|-...=|..--|-. |.+..+-+.-..+ |.||.
T Consensus 45 v~v~RPdklr~~~~gd~~~~~~~yDGkt~Tl~~~~~n~Ya~~~aP~tid~~i~~l~~~~gi~~P~aDll~~d~~~~l~~~ 124 (214)
T PF09865_consen 45 VTVQRPDKLRIDRRGDGADREFYYDGKTFTLYDPNQNVYAQADAPGTIDAAIDYLRDKYGIELPLADLLYSDPYDALMDG 124 (214)
T ss_pred EEEeCCCeEEEEEEcCCcceEEEECCCEEEEEcCcCCeEEeccCCCCHHHHHHHHHHhhCCCccHHHhcccCchHHHhhc
Confidence 68999999999998888999999999999999997766655544433 3333332222222 33332
Q ss_pred --ccceeeeeeeeCCccceeEEeecchhh
Q 013416 242 --NSVLCVMEKTINNEDCFILKVEAEASA 268 (443)
Q Consensus 242 --~A~~cvGEk~I~geDCFiLKL~ad~~~ 268 (443)
.+. +||...|+|..|.+|-...+.-.
T Consensus 125 v~~~~-~vG~~~V~G~~c~HlAfr~~~~D 152 (214)
T PF09865_consen 125 VTSAK-YVGQSVVGGVECDHLAFRNDDVD 152 (214)
T ss_pred ceEEE-EeeeEEECCEEeEEEEEecCCce
Confidence 456 99999999999999998866554
No 3
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=74.39 E-value=13 Score=35.00 Aligned_cols=105 Identities=22% Similarity=0.285 Sum_probs=61.5
Q ss_pred EEEEEecCCeEEEEEEeeCcEEEEccCCceeeeecCCCcC----ccCCCCC-chhhhhhccCCCcchhh-cccccceeee
Q 013416 175 FVLWQKRPDLWCLELVVSGRKISAGSDGKLAWRQTPWHHS----HASRGPP-RPLRRFLQGLDPRSTAN-LFSNSVLCVM 248 (443)
Q Consensus 175 FVlWQ~~Pd~W~~ELvV~G~KV~AGsDGkvaWRhtPw~~s----HAakGpp-RPLRR~lQGLDPr~tA~-lF~~A~~cvG 248 (443)
..+|.+.|++.++++.=-+.. +--|||+.+|-..|-... +...++- -||- |...-.+. ++...+...|
T Consensus 61 g~~~~kkP~~~R~~~~~p~~~-~ivsdG~~v~iydp~~~q~~~~~~~~~~~~tp~~-----~~~~~~~~~~~~~~v~~~g 134 (211)
T COG2834 61 GKLWIKRPNLFRWEYESPDEQ-VIVSDGKTVWIYDPDLEQVTKTWLSEATGNTPLM-----LLLSNIKDLLNEYNVSLLG 134 (211)
T ss_pred EEEEEecCCeEEEEecCCCCc-EEEECCCEEEEECCCCceEEEEecCCCCCCCchh-----hhhhhhhhhhccceeEecc
Confidence 577999999999998765554 778999999999995411 1111110 1221 11111111 1122233455
Q ss_pred eeeeCCccceeEEeecchhhHhhhcCCCeeEEEeeeeeccccccceeEEeec
Q 013416 249 EKTINNEDCFILKVEAEASALRARSTSNVEIIRHTVWGYFSQRTGLLVQLKD 300 (443)
Q Consensus 249 Ek~I~geDCFiLKL~ad~~~l~ars~~~~EiIrH~~~GYFSQrTGLLv~lED 300 (443)
++.+ |++|.|...... ++. ...=+|+.+++.+.++|.
T Consensus 135 ~~~~----~~~l~l~pk~~~------~~~-----~~~i~vd~~~~~~~~~~~ 171 (211)
T COG2834 135 TSDV----AYVLELTPKANL------GNS-----KQRIIVDKEDGTPLRFEL 171 (211)
T ss_pred ccce----eEEEEecccccC------CCC-----cEEEEEEcCCceEEEEEE
Confidence 5544 999988877611 111 133467888898888754
No 4
>PRK09455 rseB anti-sigma E factor; Provisional
Probab=61.01 E-value=8 Score=39.34 Aligned_cols=42 Identities=12% Similarity=0.293 Sum_probs=33.3
Q ss_pred eeeeeeeCCccceeEEeecchhhHhhhcCCCeeEEEeeeeeccccccceeEEee
Q 013416 246 CVMEKTINNEDCFILKVEAEASALRARSTSNVEIIRHTVWGYFSQRTGLLVQLK 299 (443)
Q Consensus 246 cvGEk~I~geDCFiLKL~ad~~~l~ars~~~~EiIrH~~~GYFSQrTGLLv~lE 299 (443)
..|+++|.|-+|++|.+...... |...-=|.++.||||++.+
T Consensus 131 ~~g~~rVaGr~~~vi~~~PkD~~------------rY~~~lwiD~et~llLk~~ 172 (319)
T PRK09455 131 SVGRTRIADRLCQVIRIVPKDGT------------RYSYIVWIDEESKLPLRVD 172 (319)
T ss_pred EccccEECCeeEEEEEEEECCCC------------CcceEEEEEcCCCCEEeEE
Confidence 78999999999999999887652 3333345799999999863
No 5
>PF03888 MucB_RseB: MucB/RseB family; InterPro: IPR005588 The members of this family are regulators of the anti-sigma E protein RseD.; PDB: 2P4B_B 2V42_B 2V43_A 3M4W_A.
Probab=35.51 E-value=47 Score=33.07 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=31.5
Q ss_pred eeeeeeeCCccceeEEeecchhhHhhhcCCCeeEEEeeeeeccccccceeEEe
Q 013416 246 CVMEKTINNEDCFILKVEAEASALRARSTSNVEIIRHTVWGYFSQRTGLLVQL 298 (443)
Q Consensus 246 cvGEk~I~geDCFiLKL~ad~~~l~ars~~~~EiIrH~~~GYFSQrTGLLv~l 298 (443)
..|..+|-|-+|-+|.|...+.- |+.-.=|.++.||||++.
T Consensus 99 ~~G~~RVAGr~a~~i~l~PkD~~------------RYgy~lWiD~etgLlLK~ 139 (285)
T PF03888_consen 99 LGGRERVAGREAQVIRLEPKDDY------------RYGYRLWIDEETGLLLKS 139 (285)
T ss_dssp EEEEEEETTEEEEEEEEEETTS-------------S-EEEEEEETTT--EEEE
T ss_pred ECCCceECCCEEEEEEEEEcCCC------------ceEEEEEEEcCCCCEEee
Confidence 78999999999999999987765 444445679999999986
No 6
>PF14371 DUF4412: Domain of unknown function (DUF4412)
Probab=34.60 E-value=54 Score=26.21 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=15.8
Q ss_pred eeeeeeCCccceeEEee
Q 013416 247 VMEKTINNEDCFILKVE 263 (443)
Q Consensus 247 vGEk~I~geDCFiLKL~ 263 (443)
.|.|+|+|-+|-+.++.
T Consensus 4 tGt~tI~G~~c~ky~v~ 20 (89)
T PF14371_consen 4 TGTKTIAGYKCEKYEVT 20 (89)
T ss_pred CCCEEECCEEeEEEEEE
Confidence 68999999999999997
No 7
>KOG0968 consensus DNA polymerase zeta, catalytic subunit [Replication, recombination and repair]
Probab=30.13 E-value=2.5 Score=50.05 Aligned_cols=82 Identities=35% Similarity=0.502 Sum_probs=51.0
Q ss_pred CeeEEEeeeeeccccccceeEEeeceeeeeeecCCCCCceEEeecccccccc---ceeccceeeecCCcceEEEEeecCC
Q 013416 276 NVEIIRHTVWGYFSQRTGLLVQLKDSHLLRIKTPGNNNSIFWETTMESLIQD---YRFIDGINVAHTGRTSVSLFRFGEN 352 (443)
Q Consensus 276 ~~EiIrH~~~GYFSQrTGLLv~lEDs~L~riq~~~~g~~vyWETtieS~i~D---YR~VdGi~IAH~G~t~vtl~RfGe~ 352 (443)
..||++|. ||||=+|..+|-.==--.|.||+.. +++.++-=+. |-..-|||| .||-++.+.|-=-+
T Consensus 758 GyEi~~~S-WGyl~eR~~~l~~di~~~lsRv~~~--------~~~n~~d~~~ewg~tt~S~i~i--~GR~~lNiWRilR~ 826 (1488)
T KOG0968|consen 758 GYEIHNLS-WGYLIERAKLLGIDISRDLSRVKCY--------EKTNESDDEREWGYTTISGINI--VGRHVLNIWRILRS 826 (1488)
T ss_pred eeeecccc-hHHHHHHHHHhcchHHHHHhcCCCh--------hhhhhhhhhhhccceeeccccc--cchhhhhHHHHHhh
Confidence 46888887 9999999777653111225666652 1222222222 445668887 58988888886333
Q ss_pred cccccccceeeeeeeeeeeecc
Q 013416 353 SESHTRTKMEEIWTIEEVDFNI 374 (443)
Q Consensus 353 ~~~h~~TrmEE~WtIeev~FNV 374 (443)
..+-+ ..|||.|.|||
T Consensus 827 eV~L~------nYtlEsv~~nV 842 (1488)
T KOG0968|consen 827 EVALT------NYTLESVVFNV 842 (1488)
T ss_pred hhhhh------hccHHHHHHHH
Confidence 22222 37899999997
No 8
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=27.64 E-value=83 Score=27.62 Aligned_cols=64 Identities=14% Similarity=0.365 Sum_probs=32.7
Q ss_pred EEEccCCceeeeecCCCcC-ccCCCCCchhhhhhccCCCcchhhcccccceeeeeeeeCCccceeEEeecchhhHhhhc
Q 013416 196 ISAGSDGKLAWRQTPWHHS-HASRGPPRPLRRFLQGLDPRSTANLFSNSVLCVMEKTINNEDCFILKVEAEASALRARS 273 (443)
Q Consensus 196 V~AGsDGkvaWRhtPw~~s-HAakGppRPLRR~lQGLDPr~tA~lF~~A~~cvGEk~I~geDCFiLKL~ad~~~l~ars 273 (443)
.+.|.||. +|-++|-... .....-...|-..+. || ..++.+-+ .++|+.||+|+-+ ...+.+|.
T Consensus 21 aI~g~dGs-vWA~s~g~~f~~~~~~E~~~i~~~f~--~~---~~~~~~Gi------~l~G~Ky~~~~~d--~~~i~~kk 85 (129)
T smart00392 21 AIGGKDGS-VWAASAGGNFQKITPEEIAAIAALFN--SL---AAVFSNGL------TLGGQKYMVIRAD--DRSIMGKK 85 (129)
T ss_pred EEEeCCCC-eeeccCCCCCCcCCHHHHHHHHHHcc--Cc---chhccCCe------EECCeEEEEEEec--CcEEEeec
Confidence 34577885 5998884111 011111122322222 22 34455555 6788889999863 44444444
No 9
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=26.56 E-value=22 Score=33.70 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=19.2
Q ss_pred EeeccccccccceeccceeeecCCcc
Q 013416 317 WETTMESLIQDYRFIDGINVAHTGRT 342 (443)
Q Consensus 317 WETtieS~i~DYR~VdGi~IAH~G~t 342 (443)
-++.|.|.|.||| |.|+|+|.-
T Consensus 55 ~~~kiQsli~dar----IVISHaG~G 76 (161)
T COG5017 55 KEEKIQSLIHDAR----IVISHAGEG 76 (161)
T ss_pred hHHHHHHHhhcce----EEEeccCcc
Confidence 4688999999999 899999863
No 10
>PF03043 Herpes_UL87: Herpesvirus UL87 family; InterPro: IPR004285 Members of this family are functionally uncharacterised.
Probab=24.82 E-value=19 Score=39.78 Aligned_cols=69 Identities=20% Similarity=0.455 Sum_probs=48.7
Q ss_pred eeceeeeeeecCCCCCceEEeeccccccccceeccceeeecCCcceEEEEe-ecCCcccccccceeeeeeeeeeeec
Q 013416 298 LKDSHLLRIKTPGNNNSIFWETTMESLIQDYRFIDGINVAHTGRTSVSLFR-FGENSESHTRTKMEEIWTIEEVDFN 373 (443)
Q Consensus 298 lEDs~L~riq~~~~g~~vyWETtieS~i~DYR~VdGi~IAH~G~t~vtl~R-fGe~~~~h~~TrmEE~WtIeev~FN 373 (443)
|||-++.| .+-..|||-|.--|.|+ .-||+||.-=--.++++.| +|..+.+|..-.+--.=++.++.+|
T Consensus 337 LENQ~vVR----s~R~~VfWTTNFPs~VS---~~~g~Nv~WFKAaTa~i~kv~G~~L~~~~~~E~~~i~~~~~~~i~ 406 (538)
T PF03043_consen 337 LENQSVVR----SGRSDVFWTTNFPSMVS---TKDGVNVSWFKAATATISKVSGRDLENQLLKELSPILTHPDARID 406 (538)
T ss_pred ccchhhhh----ccCCceEEecCCCeEEE---cCCCceeeeeeeccEeecccccHHHHHHHHHHHHHHhCCcceeec
Confidence 89999987 46679999999999987 4679999776666777777 6777776654233333344555444
No 11
>cd06911 VirB9_CagX_TrbG VirB9/CagX/TrbG, a component of the type IV secretion system. VirB9 is a component of the type IV secretion system, which is employed by pathogenic bacteria to export virulence proteins directly from the bacterial cytoplasm into the host cell. Unlike the more common type III secretion system, type IV systems evolved from the conjugative apparatus, which is used to transfer DNA between cells. VirB9 was initially identified as an essential virulence gene on the Agrobacterium tumefaciens Ti plasmid. In the pilin-like conjugative structure, VirB9 appears to form a stabilizing complex in the outer membrane, by interacting with the lipoprotein VirB7. The heterodimer has been shown to stabilize other components of the type IV system. This alignment model spans the C-terminal domain of VirB9. CagX is a component of the Helicobacter pylori cag PAI-encoded type IV secretion system. Some other members of this family are involved in conjugal transfer to T-DNA of plant cells
Probab=20.80 E-value=3e+02 Score=22.50 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=30.7
Q ss_pred eeceeeeeeecCCC--CCceEEeecc-ccccccceeccceeeecCC
Q 013416 298 LKDSHLLRIKTPGN--NNSIFWETTM-ESLIQDYRFIDGINVAHTG 340 (443)
Q Consensus 298 lEDs~L~riq~~~~--g~~vyWETti-eS~i~DYR~VdGi~IAH~G 340 (443)
+.|-..|-|+-..+ -.+||+...- ...+-+||-..+..|.|.=
T Consensus 22 ~DDG~~Tyi~f~~~~~~Pavf~~~~~g~~~lvn~~~~~~~~vV~~v 67 (86)
T cd06911 22 FDDGRFTYFQFPPNAELPAIFVVDPDGKESLVNYRVEGNYIVVDGV 67 (86)
T ss_pred EECCEEEEEECCCCCCCCcEEEECCCCCEEeceeEEECCEEEEecc
Confidence 45666676666433 3489998874 5567779999899998873
No 12
>PHA03374 hypothetical protein; Provisional
Probab=20.18 E-value=26 Score=39.83 Aligned_cols=69 Identities=22% Similarity=0.425 Sum_probs=48.9
Q ss_pred eeceeeeeeecCCCCCceEEeeccccccccceeccceeeecCCcceEEEEe-ecCCcccccccceeeeeeeeeeeec
Q 013416 298 LKDSHLLRIKTPGNNNSIFWETTMESLIQDYRFIDGINVAHTGRTSVSLFR-FGENSESHTRTKMEEIWTIEEVDFN 373 (443)
Q Consensus 298 lEDs~L~riq~~~~g~~vyWETtieS~i~DYR~VdGi~IAH~G~t~vtl~R-fGe~~~~h~~TrmEE~WtIeev~FN 373 (443)
|||-++.| .+-+.|||-|..-|.|+ .-||+||.-=--.++++.| +|....+|..-.+--.=++.++-||
T Consensus 519 LEnQ~vVR----~~R~~VfWTTNFPs~vS---~~~g~NVsWFKAATAtIskv~G~~L~~~l~~E~~~I~~~~~a~i~ 588 (730)
T PHA03374 519 LENQSLVR----TGRRDVFWTTNFPSVVS---TKDGLNVSWFKAATATISKIHGRTLVKQVIREVSPILTHRNARIN 588 (730)
T ss_pred ccchhhhh----ccCCceEEecCCCeEEE---cCCCcceeeeeecceeecccccHHHHHHHHHHHHHHhcCccceec
Confidence 88888877 46679999999999987 4579999776666777777 5666666654344444455555555
Done!