Query 013416
Match_columns 443
No_of_seqs 96 out of 98
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 10:10:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3buu_A Uncharacterized LOLA su 98.3 3.4E-05 1.2E-09 68.7 16.1 207 108-386 7-224 (229)
2 3bk5_A Putative outer membrane 98.2 9.3E-05 3.2E-09 66.6 16.5 211 107-384 3-232 (237)
3 2yzy_A Putative uncharacterize 90.7 1.3 4.5E-05 39.8 9.5 89 192-298 64-160 (200)
4 3mh9_C Lipoprotein LPRG; mutan 79.0 4.7 0.00016 37.5 7.2 77 186-273 75-155 (218)
5 3m4w_A Sigma-E factor regulato 71.5 2.9 9.8E-05 40.4 3.8 54 232-299 95-148 (295)
6 3tu8_A Burkholderia lethal fac 33.3 23 0.00079 32.4 2.7 26 182-208 81-106 (210)
7 3d9y_A Profilin; yeast, actin- 31.7 22 0.00074 30.1 2.1 59 197-273 22-83 (127)
8 1ypr_A Profilin; actin-binding 28.3 53 0.0018 27.7 4.0 61 197-274 20-82 (125)
9 3o12_A Uncharacterized protein 26.9 1.4E+02 0.0048 27.4 6.8 32 178-212 35-66 (221)
10 3mep_A Uncharacterized protein 25.2 1.4E+02 0.0048 26.5 6.3 32 178-212 6-37 (198)
11 3nul_A Profilin I; cytoskeleto 24.4 51 0.0017 28.0 3.2 61 197-274 24-87 (130)
12 1bte_A Protein (activin recept 23.8 50 0.0017 27.6 2.9 22 171-194 33-54 (97)
No 1
>3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718}
Probab=98.26 E-value=3.4e-05 Score=68.72 Aligned_cols=207 Identities=13% Similarity=0.137 Sum_probs=117.0
Q ss_pred hhHHHHHhhhhhhcCChhhhccccEEEEeeeEEEEEEeeccCCCcccchheeccccccCCCccccccEEEEEecCCeEEE
Q 013416 108 SMAKYIVKQYVASVGGEKALNSIDSMYAMGKVKMAASEFCAGEGSLNDRLVKVRHLKKGVGGGEMGGFVLWQKRPDLWCL 187 (443)
Q Consensus 108 SsA~YIvqQY~AAtGG~k~l~svksmyA~GkVrM~~~e~~~g~~~~~~~~~~~~~~~~g~~~~e~GgFVlWQ~~Pd~W~~ 187 (443)
-+|+-||++.-++.+|. ++..++.+ |.... . ++ .. ..--+.+|.+.++..++
T Consensus 7 ~~a~eil~~~~~~~~~~------~~~~~~~~--~~~~~-~-~~-~~-----------------~~~~~~~~~~~~~~~~~ 58 (229)
T 3buu_A 7 VTAQSILEKADEIRFPQ------DSFQVNVA--IRTAA-P-DH-AE-----------------DLYRYQVLSKGNENSIV 58 (229)
T ss_dssp CCHHHHHHHHHHHHSCS------SCEEEEEE--EEEEE-T-TE-EC-----------------CCEEEEEEEETTTEEEE
T ss_pred CCHHHHHHHHHhhccCC------CCeEEEEE--EEEEc-C-CC-ce-----------------EEEEEEEEecCCceEEE
Confidence 46899999999988764 33334333 32221 1 10 00 11124558888887776
Q ss_pred EEE----eeCcEEEEccCCceeeeecCCCcCccCCCCCchhhhhhccCCCcchhhc----cc---ccceeeeeeeeCCcc
Q 013416 188 ELV----VSGRKISAGSDGKLAWRQTPWHHSHASRGPPRPLRRFLQGLDPRSTANL----FS---NSVLCVMEKTINNED 256 (443)
Q Consensus 188 ELv----V~G~KV~AGsDGkvaWRhtPw~~sHAakGppRPLRR~lQGLDPr~tA~l----F~---~A~~cvGEk~I~geD 256 (443)
.+. +.|..++. +|+-+|--.|-+.. .-+-++. -+++ | .++...+ |+ +.. ++|+++|+|.+
T Consensus 59 ~~~~P~~~~g~~~l~--~~~~~w~y~P~~~~-v~r~~~~--~~~~-g--~~~~~d~~~~~~~~~y~~~-l~g~~~v~g~~ 129 (229)
T 3buu_A 59 MITEPASERGQAILM--KGRDLWVFMPSVSQ-PIRLSLS--QRLT-G--QVANGDIARANFTGDYHPQ-LLRNESIDDED 129 (229)
T ss_dssp EEEESTTTTTCEEEE--ETTEEEEECTTCSS-CEEECTT--SEEE-T--TEEHHHHHCCCSBTTEEEE-EEEEEEETTEE
T ss_pred EEeCChhhcCeEEee--cCCceEEECCCCCc-eEEccCc--cccc-c--cccccccccCCccccCceE-EeeeeeeCCee
Confidence 665 56777774 99999999997622 1011111 0111 2 1111111 11 224 89999999999
Q ss_pred ceeEEeecchhhHhhhcCCCeeEEEeeeeeccccccceeEEeeceeeeeeecCCCCCceEEeeccccccccceeccceee
Q 013416 257 CFILKVEAEASALRARSTSNVEIIRHTVWGYFSQRTGLLVQLKDSHLLRIKTPGNNNSIFWETTMESLIQDYRFIDGINV 336 (443)
Q Consensus 257 CFiLKL~ad~~~l~ars~~~~EiIrH~~~GYFSQrTGLLv~lEDs~L~riq~~~~g~~vyWETtieS~i~DYR~VdGi~I 336 (443)
|++|++...+.. +. .=+ ..=|+++.|+|+++.+- -+...--|++-. +.+|+.++|+.+
T Consensus 130 ~~vl~~~pk~~~---~~-----y~k--~~lwiD~~t~~p~k~~~---------~d~~G~l~k~~~---~~~~~~~~g~~~ 187 (229)
T 3buu_A 130 YYVLELTGIDRS---VT-----YQK--VLLWVNQSNFRPYKAEF---------YSVSGRLLKTSR---YENFDNILGEMR 187 (229)
T ss_dssp EEEEEEEESSTT---SS-----CSE--EEEEEETTTCCEEEEEE---------ECTTSCEEEEEE---EEEEEEETTEEE
T ss_pred EEEEEEEecCCC---Cc-----eEE--EEEEEECCCCcEEEEEE---------EcCCCCEEEEEE---eeccEEECCEEE
Confidence 999999887664 10 001 12378999999998732 111223455332 567888887665
Q ss_pred ecCCcceEEEEeecCCcccccccceeeeeeeeeeeeccCCCCccccCCCc
Q 013416 337 AHTGRTSVSLFRFGENSESHTRTKMEEIWTIEEVDFNIEGLSMDCFLPPG 386 (443)
Q Consensus 337 AH~G~t~vtl~RfGe~~~~h~~TrmEE~WtIeev~FNV~GLS~DcFiPP~ 386 (443)
++ -..+-+...+-..|.|+ +.++.|| +|+-+.|-|..
T Consensus 188 ~~-------~~~~~d~~~~g~~t~~~----~~~~~~~--~l~~~~Ft~~~ 224 (229)
T 3buu_A 188 PT-------RIIMEDALKSGEVSVLD----YSDMKLR--DLPDKIFTKDY 224 (229)
T ss_dssp EE-------EEEEEESSSSCCEEEEE----EEEEEEC--CCCGGGSSTGG
T ss_pred eE-------EEEEEeCcCCCCEEEEE----EeeeEeC--CCChHhCCHHH
Confidence 53 22222212222345554 6688998 88888886543
No 2
>3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer membrane protein domain, PSI-2, protein struc initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.15 E-value=9.3e-05 Score=66.59 Aligned_cols=211 Identities=14% Similarity=0.117 Sum_probs=117.6
Q ss_pred hhhHHHHHhhhhhhcCChhhhccccEEEEeeeEEEEEEeeccCCCcccchheeccccccCCCccccccEEEEEecC----
Q 013416 107 ASMAKYIVKQYVASVGGEKALNSIDSMYAMGKVKMAASEFCAGEGSLNDRLVKVRHLKKGVGGGEMGGFVLWQKRP---- 182 (443)
Q Consensus 107 ~SsA~YIvqQY~AAtGG~k~l~svksmyA~GkVrM~~~e~~~g~~~~~~~~~~~~~~~~g~~~~e~GgFVlWQ~~P---- 182 (443)
+-+|+.||++..++..|. ++..+.++ |....- .| .....-|.+|.+.|
T Consensus 3 a~~~~eil~~~~~~~~~~------~~~~~~~~--~~~~~~-~g-------------------~~~~~~~~~~~~~~~~~~ 54 (237)
T 3bk5_A 3 AEKGLEIAQERKARDEGW------GDSIATME--MILKNA-QG-------------------ESSTRLMRLKSLEVEGDG 54 (237)
T ss_dssp HHHHHHHHHHHHHTTCCC------CEEEEEEE--EEEECC-C--------------------CCEEEEEEEEEECCTTSC
T ss_pred CCCHHHHHHHhHhhhccc------CCeEEEEE--EEEECC-CC-------------------CEEEEEEEeecccCCCCC
Confidence 457889999999987662 33344333 332111 11 11123466677776
Q ss_pred CeEEEEEE----eeCcEEEE---ccCCceeeeecCCCcCccCCCCCchhhhhhccCCCcchh-------hcccccceeee
Q 013416 183 DLWCLELV----VSGRKISA---GSDGKLAWRQTPWHHSHASRGPPRPLRRFLQGLDPRSTA-------NLFSNSVLCVM 248 (443)
Q Consensus 183 d~W~~ELv----V~G~KV~A---GsDGkvaWRhtPw~~sHAakGppRPLRR~lQGLDPr~tA-------~lF~~A~~cvG 248 (443)
+..++++. +.|..+.. -.+|+-+|-..|-+.. .-|-++.-....+-|.| ++.. .-| +.. ++|
T Consensus 55 ~~~~~~~~~P~~~~G~~~L~~~~~~~~~~~w~y~P~~~r-v~ri~~~~~~~~~~~s~-~~~~d~~~~~~~~y-~~~-l~g 130 (237)
T 3bk5_A 55 DKGLTIFDQPRDVTGTAFLNHSHTIGADDQWLYLPALKR-VKRISSRNKSGPFMGSE-FAYEDLSSFEIEKY-RFN-HLK 130 (237)
T ss_dssp CEEEEEEEESTTTTTCEEEEECCSSSCCEEEEEETTTTE-EEECCGGGTTSBSTTSS-CBGGGGSCCCGGGE-EEE-EEE
T ss_pred cEEEEEEECchHhCCcEEEEEEcCCCCccceeEccccCc-eEEcCccccCCCccccc-cChhHhhccccccc-ceE-Eee
Confidence 56666666 67888774 1299999999996621 11111100001111222 1110 111 234 899
Q ss_pred eeeeCCccceeEEeecchhhHhhhcCCCeeEEEeeeeeccccccceeEEeeceeeeeeecCCCCCceEEeeccccccccc
Q 013416 249 EKTINNEDCFILKVEAEASALRARSTSNVEIIRHTVWGYFSQRTGLLVQLKDSHLLRIKTPGNNNSIFWETTMESLIQDY 328 (443)
Q Consensus 249 Ek~I~geDCFiLKL~ad~~~l~ars~~~~EiIrH~~~GYFSQrTGLLv~lEDs~L~riq~~~~g~~vyWETtieS~i~DY 328 (443)
+++++|.+|++|++...+.. | ..-+.. =|+++.|+++++++- + . .+| --|++- .+.+|
T Consensus 131 ~~~~~g~~~~vl~~~pk~~~---~-----~y~k~~--~wiD~~t~~~~k~~~--~----d-~~G--~l~~~~---~~~~~ 188 (237)
T 3bk5_A 131 DEKFNGQDVFVLEQIPTDKN---S-----GYTKQV--VWLDKAHYRPLKVEF--Y----D-RKG--ALLKTL---TFANY 188 (237)
T ss_dssp EEEETTEEEEEEEEEESCTT---S-----SEEEEE--EEEETTTCCEEEEEE--E----E-TTS--CEEEEE---EEEEE
T ss_pred eeEECCeeEEEEEEEECCCC---C-----CceEEE--EEEECCCCeEEEEEE--E----c-CCC--CEEEEE---EEeee
Confidence 99999999999999887664 1 111122 378999999998742 1 1 122 134433 25578
Q ss_pred eeccc-eeeecCCcceEEEEeecCCcccccccceeeeeeeeeeeeccCCCCccccCC
Q 013416 329 RFIDG-INVAHTGRTSVSLFRFGENSESHTRTKMEEIWTIEEVDFNIEGLSMDCFLP 384 (443)
Q Consensus 329 R~VdG-i~IAH~G~t~vtl~RfGe~~~~h~~TrmEE~WtIeev~FNV~GLS~DcFiP 384 (443)
+.++| +.+++ ...+-+ ...-..|.|+ +.++.||. +|.-+.|=|
T Consensus 189 ~~~~g~~~~~~-------~~~~~d-l~~g~~t~~~----~~~~~~~~-~~~~~~Ft~ 232 (237)
T 3bk5_A 189 KQYLDKYWRAH-------TMAMTN-HQTGKSTELN----TSDLRFQT-GLEENDFNK 232 (237)
T ss_dssp EEETTTEEEEE-------EEEEEE-TTTCCEEEEE----EEEEEECC-CCCGGGGCG
T ss_pred EEEcceEEEEE-------EEEEEE-CCCCCEEEEE----EeeEEeCC-CCChHhCCH
Confidence 88888 65553 222222 1222345555 55899998 677666644
No 3
>2yzy_A Putative uncharacterized protein TTHA1012; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.60A {Thermus thermophilus}
Probab=90.70 E-value=1.3 Score=39.75 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=46.5
Q ss_pred eCcEEEEccCCceeeeecCCCcCccCCCCCchhhhhhc-cCCCcchhhcc-----c--ccceeeeeeeeCCccceeEEee
Q 013416 192 SGRKISAGSDGKLAWRQTPWHHSHASRGPPRPLRRFLQ-GLDPRSTANLF-----S--NSVLCVMEKTINNEDCFILKVE 263 (443)
Q Consensus 192 ~G~KV~AGsDGkvaWRhtPw~~sHAakGppRPLRR~lQ-GLDPr~tA~lF-----~--~A~~cvGEk~I~geDCFiLKL~ 263 (443)
.|+.++ +||+-.|...|-.. .+ ..+|+-+.++ ++- ..-+.|. . -.+..+||+.++|.+|++|.+.
T Consensus 64 ~g~~~l--~~g~~~W~y~p~~~-qv---~i~~~~~~~~~~mg-~~~~~l~~~~~l~~~y~~~~~~~e~~~g~~~~~le~~ 136 (200)
T 2yzy_A 64 EGNFTV--ITEKEVWNYLYLTN-QL---VISPREKAKIQGLG-FAPQGLGDLKALSEQVDLRLEGEVRLPEGMAWKLVGR 136 (200)
T ss_dssp TTCEEE--ECSSCEEEEETTTT-EE---EEEC-------------------------CCEEEEEEEEEETTEEEEEEEEE
T ss_pred cCeEEE--ecCchheeecCCcC-eE---EEeCcccccCcccC-cCHHHhhccccccccceEEEEEEEEeCCccEEEEEEE
Confidence 466665 59999999988651 11 2344433322 110 0011122 1 1123789999999999999988
Q ss_pred cchhhHhhhcCCCeeEEEeeeeeccccccceeEEe
Q 013416 264 AEASALRARSTSNVEIIRHTVWGYFSQRTGLLVQL 298 (443)
Q Consensus 264 ad~~~l~ars~~~~EiIrH~~~GYFSQrTGLLv~l 298 (443)
..... .. +-+-=|+++.+++++++
T Consensus 137 Pk~~~-------~y----~k~~~wvdk~~~~~~k~ 160 (200)
T 2yzy_A 137 SKENQ-------GF----AAMELYILKADPRPLRF 160 (200)
T ss_dssp C---C-------CC----SEEEEEEETTTTEEEEE
T ss_pred ECCCC-------ce----EEEEEEEECCCCeEEEE
Confidence 75432 11 12334678888888864
No 4
>3mh9_C Lipoprotein LPRG; mutant LPRG, glycolipid binding protein, lipid protein, structural genomics, TB structural genomics consor TBSGC; 1.79A {Mycobacterium tuberculosis} SCOP: b.125.1.0 PDB: 3mha_A* 3mh8_A*
Probab=79.01 E-value=4.7 Score=37.53 Aligned_cols=77 Identities=22% Similarity=0.246 Sum_probs=49.1
Q ss_pred EEEEEeeCcEEEEccCCceeeeecCCCcCccCCCCCchhhhhhccCCCcch-hhc---ccccceeeeeeeeCCccceeEE
Q 013416 186 CLELVVSGRKISAGSDGKLAWRQTPWHHSHASRGPPRPLRRFLQGLDPRST-ANL---FSNSVLCVMEKTINNEDCFILK 261 (443)
Q Consensus 186 ~~ELvV~G~KV~AGsDGkvaWRhtPw~~sHAakGppRPLRR~lQGLDPr~t-A~l---F~~A~~cvGEk~I~geDCFiLK 261 (443)
-+|+++-|-++-+.-.++ .|-.-+- ++. -..| ..-|||... ++| +.+.. .+|+++|||....+++
T Consensus 75 ~ve~v~vd~~lY~~~~~~-~w~~~~~----a~~-~~d~----~~~ldP~~gl~~lL~~~~dv~-~~G~EtvdGv~t~~~t 143 (218)
T 3mh9_C 75 DADFVVFDGILYATLTPN-QWSDFGP----AAD-IYDP----AQVLNPDTGLANVLANFADAK-AEGRDTINGQNTIRIS 143 (218)
T ss_dssp EEEEEEETTEEEEEEETT-EEEEEEE----GGG-TCCG----GGGTCTTTSHHHHHHTEEEEE-EEEEEEETTEEEEEEE
T ss_pred ceEEEEECCEEEEecCCC-CceEcCc----ccc-ccCh----hhhcCHHHHHHHHHHhcCCce-ecceeEECCEEEEEEE
Confidence 678887777777754443 2433221 110 0112 335899754 444 34555 9999999999999999
Q ss_pred eecchhhHhhhc
Q 013416 262 VEAEASALRARS 273 (443)
Q Consensus 262 L~ad~~~l~ars 273 (443)
-+-+++.+.+-.
T Consensus 144 Gtv~~~~~~~~~ 155 (218)
T 3mh9_C 144 GKVSAQAVNQIA 155 (218)
T ss_dssp EEECHHHHHHHC
T ss_pred EEECHHHHhhhc
Confidence 888888877543
No 5
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=71.50 E-value=2.9 Score=40.40 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=39.4
Q ss_pred CCcchhhcccccceeeeeeeeCCccceeEEeecchhhHhhhcCCCeeEEEeeeeeccccccceeEEee
Q 013416 232 DPRSTANLFSNSVLCVMEKTINNEDCFILKVEAEASALRARSTSNVEIIRHTVWGYFSQRTGLLVQLK 299 (443)
Q Consensus 232 DPr~tA~lF~~A~~cvGEk~I~geDCFiLKL~ad~~~l~ars~~~~EiIrH~~~GYFSQrTGLLv~lE 299 (443)
|+...+..|.- . .+|+++|.|-+|.+|++...... | -.|.+ |.++.|||+++.|
T Consensus 95 ~~~~l~~~Y~~-~-~~g~erVaGr~~~vv~l~PkD~~---r-------y~y~l--WiD~et~lpLk~e 148 (295)
T 3m4w_A 95 DFKRLSPYYDF-I-SVGRTRIADRLCEVIRVVARDGT---R-------YSYIV--WMDTESKLPMRVD 148 (295)
T ss_dssp CHHHHTTTEEE-E-EEEEEEETTEEEEEEEEEETTSC---S-------CEEEE--EEETTTCCEEEEE
T ss_pred ChhHHhhCceE-E-EcCceEECCeEEEEEEEEECCCC---c-------eeEEE--EEEccCCCEEEEE
Confidence 44444444432 3 79999999999999999876642 1 24454 7899999999874
No 6
>3tu8_A Burkholderia lethal factor 1 (BLF1); toxin, unknown function; 1.04A {Burkholderia pseudomallei} PDB: 3tua_A
Probab=33.28 E-value=23 Score=32.45 Aligned_cols=26 Identities=35% Similarity=0.601 Sum_probs=21.5
Q ss_pred CCeEEEEEEeeCcEEEEccCCceeeee
Q 013416 182 PDLWCLELVVSGRKISAGSDGKLAWRQ 208 (443)
Q Consensus 182 Pd~W~~ELvV~G~KV~AGsDGkvaWRh 208 (443)
-||-.+-..++||||.|| ||.++|..
T Consensus 81 vdmlfftyylsgckvfag-dggpvwhi 106 (210)
T 3tu8_A 81 VDMLFFTYYLSGCKVFAG-DGGPVWHI 106 (210)
T ss_dssp TTCEEEECCBSSCEEEEE-TTSCEEEE
T ss_pred hhhhhhhhhhccceEEec-CCCceeeE
Confidence 367788889999999998 77788865
No 7
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=31.65 E-value=22 Score=30.05 Aligned_cols=59 Identities=14% Similarity=0.430 Sum_probs=34.9
Q ss_pred EEccCCceeeeecCCCcCccCCCCCch--hhhhhccC-CCcchhhcccccceeeeeeeeCCccceeEEeecchhhHhhhc
Q 013416 197 SAGSDGKLAWRQTPWHHSHASRGPPRP--LRRFLQGL-DPRSTANLFSNSVLCVMEKTINNEDCFILKVEAEASALRARS 273 (443)
Q Consensus 197 ~AGsDGkvaWRhtPw~~sHAakGppRP--LRR~lQGL-DPr~tA~lF~~A~~cvGEk~I~geDCFiLKL~ad~~~l~ars 273 (443)
+.|-||...|-++|-. ...| ++..+..+ || ..+|.+-. .++|+.|++|+-+ +..+.+|.
T Consensus 22 I~g~dG~svwA~s~gf-------~~~p~E~~~i~~~f~d~---~~~~~~Gl------~l~G~Ky~vir~d--~~~i~~kk 83 (127)
T 3d9y_A 22 IVSRAGDSVWAASAGF-------NLSPQEIQGLAAGFQDP---PSMFGTGI------ILAGQKYITIRAE--GRSIYGKL 83 (127)
T ss_dssp EEETTSSCEEEECTTC-------CCCHHHHHHHHHHHHST---THHHHHCE------EETTEEEEEEEEC--SSEEEEEE
T ss_pred EEeCCCCeEEEeCCCC-------ccCHHHHHHHHHHhcCc---chhhcCCE------EEcCeEEEEEEeC--cceEEEEc
Confidence 3478998789999843 2344 33333322 33 33455555 5778889999964 33444444
No 8
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=28.27 E-value=53 Score=27.69 Aligned_cols=61 Identities=21% Similarity=0.413 Sum_probs=36.6
Q ss_pred EEccCCceeeeecCCCcCccCCCCCch--hhhhhccCCCcchhhcccccceeeeeeeeCCccceeEEeecchhhHhhhcC
Q 013416 197 SAGSDGKLAWRQTPWHHSHASRGPPRP--LRRFLQGLDPRSTANLFSNSVLCVMEKTINNEDCFILKVEAEASALRARST 274 (443)
Q Consensus 197 ~AGsDGkvaWRhtPw~~sHAakGppRP--LRR~lQGLDPr~tA~lF~~A~~cvGEk~I~geDCFiLKL~ad~~~l~ars~ 274 (443)
+.|-||.-.|-++|-.. ..| ++..+..++- +..++.+-. .++|+-|++|+-+ ...+.++..
T Consensus 20 I~g~DG~svwA~s~~f~-------~~~~E~~~i~~~f~~--~~~~~~~Gl------~l~G~KY~~i~~d--~~~i~~kk~ 82 (125)
T 1ypr_A 20 IYSRAGDAVWATSGGLS-------LQPNEIGEIVQGFDN--PAGLQSNGL------HIQGQKFMLLRAD--DRSIYGRHD 82 (125)
T ss_dssp EEETTSCCEEEEESCCC-------CCHHHHHHHHHHTTC--THHHHHHCE------EETTEEEEEEEEC--SSEEEEEET
T ss_pred EEeCCCCcEEEECCCCc-------cCHHHHHHHHHhccC--cchhccCCe------EECCEEEEEEecC--CcEEEEecC
Confidence 45789967799987431 234 4444444432 244555656 5788899999965 334455443
No 9
>3o12_A Uncharacterized protein YJL217W; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.50A {Saccharomyces cerevisiae}
Probab=26.88 E-value=1.4e+02 Score=27.36 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=22.7
Q ss_pred EEecCCeEEEEEEeeCcEEEEccCCceeeeecCCC
Q 013416 178 WQKRPDLWCLELVVSGRKISAGSDGKLAWRQTPWH 212 (443)
Q Consensus 178 WQ~~Pd~W~~ELvV~G~KV~AGsDGkvaWRhtPw~ 212 (443)
|.-.|..|.++ +|.=.+...-+.--||.|++.
T Consensus 35 W~n~P~~~~~~---~~~l~i~~~~~TD~w~~t~~~ 66 (221)
T 3o12_A 35 WLNKPKSVFQE---AGKVTLETDEKTDFWRETFYG 66 (221)
T ss_dssp EESCCSEEEEE---TTEEEEECCSSCCEEESTTTC
T ss_pred EecCCcceEEc---CCEEEEEcCCCCceecCCCCC
Confidence 98889999887 454444445567799997653
No 10
>3mep_A Uncharacterized protein ECA2234; all beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Pectobacterium atrosepticum}
Probab=25.18 E-value=1.4e+02 Score=26.52 Aligned_cols=32 Identities=19% Similarity=0.440 Sum_probs=23.3
Q ss_pred EEecCCeEEEEEEeeCcEEEEccCCceeeeecCCC
Q 013416 178 WQKRPDLWCLELVVSGRKISAGSDGKLAWRQTPWH 212 (443)
Q Consensus 178 WQ~~Pd~W~~ELvV~G~KV~AGsDGkvaWRhtPw~ 212 (443)
|.-.|..|.++ +|.=.+...-+..-||.|++.
T Consensus 6 W~n~p~~~~~~---~~~l~i~a~~~tD~w~~~~~~ 37 (198)
T 3mep_A 6 WINRPEYSEVS---EDRIVIVSDANTDFWENTYYD 37 (198)
T ss_dssp EESCCSEEEEC---SSEEEEECCTTCCEEESTTTC
T ss_pred EEcCCceEEEe---CCEEEEEeCCCCcEeeCCCCC
Confidence 99999999986 454444445677899998753
No 11
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=24.43 E-value=51 Score=27.98 Aligned_cols=61 Identities=18% Similarity=0.432 Sum_probs=33.9
Q ss_pred EEccCCceeeeecCCCcCccCCCCCch--hhhhhccC-CCcchhhcccccceeeeeeeeCCccceeEEeecchhhHhhhc
Q 013416 197 SAGSDGKLAWRQTPWHHSHASRGPPRP--LRRFLQGL-DPRSTANLFSNSVLCVMEKTINNEDCFILKVEAEASALRARS 273 (443)
Q Consensus 197 ~AGsDGkvaWRhtPw~~sHAakGppRP--LRR~lQGL-DPr~tA~lF~~A~~cvGEk~I~geDCFiLKL~ad~~~l~ars 273 (443)
+.|-||.+ |-++|-.. ...| ++..+..+ || ..+|.+-. .++|+.|++|+-+.+ ..+++|.
T Consensus 24 Iig~dGsv-WA~s~gf~------~~~p~E~~~i~~~f~d~---~~~~~~Gl------~l~G~Ky~~ir~d~~-~~i~~kk 86 (130)
T 3nul_A 24 ILGQDGSV-WAQSAKFP------QLKPQEIDGIKKDFEEP---GFLAPTGL------FLGGEKYMVIQGEQG-AVIRGKK 86 (130)
T ss_dssp EEETTSCE-EEECTTCC------CCCHHHHHHHHHHHHST---TSSTTTCE------EETTEEEEEEEEETT-TEEEEEE
T ss_pred EEeCCCCE-EEcCCCcc------cCCHHHHHHHHHhccCc---hhhccCCE------EECCeEEEEEEeCCC-cEEEEec
Confidence 33789985 99998430 1234 23333222 33 23455555 678889999997542 2344443
Q ss_pred C
Q 013416 274 T 274 (443)
Q Consensus 274 ~ 274 (443)
+
T Consensus 87 g 87 (130)
T 3nul_A 87 G 87 (130)
T ss_dssp T
T ss_pred C
Confidence 3
No 12
>1bte_A Protein (activin receptor type II); serine kinase, ligand binding domain, three-finger transferase; HET: NAG; 1.50A {Mus musculus} SCOP: g.7.1.3 PDB: 2goo_C* 1lx5_B*
Probab=23.85 E-value=50 Score=27.60 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=16.1
Q ss_pred ccccEEEEEecCCeEEEEEEeeCc
Q 013416 171 EMGGFVLWQKRPDLWCLELVVSGR 194 (443)
Q Consensus 171 e~GgFVlWQ~~Pd~W~~ELvV~G~ 194 (443)
-.+||+||.+..+ .++++..|+
T Consensus 33 ~~~C~~lW~~~~g--~~~i~~qGC 54 (97)
T 1bte_A 33 RRHCFATWKNISG--SIEIVKQGC 54 (97)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEE
T ss_pred CCceEEEEeeCCC--CEEEEEecc
Confidence 4799999999985 445555554
Done!