Query 013416
Match_columns 443
No_of_seqs 96 out of 98
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 10:10:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013416.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013416hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1btea_ g.7.1.3 (A:) Type II a 46.3 5.8 0.00042 31.5 2.8 22 171-194 32-53 (96)
2 d2h62d1 g.7.1.3 (D:8-98) Type 35.0 13 0.00097 29.1 3.3 22 171-194 31-52 (91)
3 d1tdja3 d.58.18.2 (A:424-514) 26.9 9.3 0.00068 29.6 1.0 43 220-262 18-69 (91)
4 d1ypra_ d.110.1.1 (A:) Profili 24.7 22 0.0016 27.9 3.0 62 197-275 20-83 (125)
5 d2byoa1 b.125.1.3 (A:20-207) P 19.1 52 0.0038 27.5 4.4 77 186-275 63-143 (188)
6 d1fi4a1 d.14.1.5 (A:3-190) Mev 16.0 26 0.0019 29.9 1.7 16 167-182 154-169 (188)
7 d2i74a1 b.18.1.29 (A:472-651) 11.9 76 0.0055 27.1 3.5 38 173-210 104-157 (180)
8 d1v66a_ a.140.2.1 (A:) p53 bin 11.6 56 0.0041 24.2 2.1 18 64-81 12-29 (65)
9 d1acfa_ d.110.1.1 (A:) Profili 11.2 59 0.0043 25.3 2.3 58 196-272 20-80 (125)
10 d2azeb1 e.63.1.2 (B:201-301) T 10.0 29 0.0021 27.2 -0.0 11 15-25 70-80 (101)
No 1
>d1btea_ g.7.1.3 (A:) Type II activin receptor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.29 E-value=5.8 Score=31.46 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=16.5
Q ss_pred ccccEEEEEecCCeEEEEEEeeCc
Q 013416 171 EMGGFVLWQKRPDLWCLELVVSGR 194 (443)
Q Consensus 171 e~GgFVlWQ~~Pd~W~~ELvV~G~ 194 (443)
..+||+||+..++. ++++..|+
T Consensus 32 ~~~Cf~lW~~~~g~--~~i~~qGC 53 (96)
T d1btea_ 32 RRHCFATWKNISGS--IEIVKQGC 53 (96)
T ss_dssp CCEEEEEEEEETTE--EEEEEEEE
T ss_pred cCceEEecccCCCC--EEEEEecC
Confidence 37899999999987 44555555
No 2
>d2h62d1 g.7.1.3 (D:8-98) Type II activin receptor {Mouse (Mus musculus), isoform IIB [TaxId: 10090]}
Probab=34.96 E-value=13 Score=29.08 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=17.2
Q ss_pred ccccEEEEEecCCeEEEEEEeeCc
Q 013416 171 EMGGFVLWQKRPDLWCLELVVSGR 194 (443)
Q Consensus 171 e~GgFVlWQ~~Pd~W~~ELvV~G~ 194 (443)
...||+||+..++- ++++..|+
T Consensus 31 ~~~Cy~lW~~~~~~--i~i~~qGC 52 (91)
T d2h62d1 31 RLHCYASWRNSSGT--IELVKKGC 52 (91)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEE
T ss_pred CCccEEEeecCCCC--EEEEEecc
Confidence 46799999999977 55666776
No 3
>d1tdja3 d.58.18.2 (A:424-514) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.94 E-value=9.3 Score=29.56 Aligned_cols=43 Identities=26% Similarity=0.318 Sum_probs=24.6
Q ss_pred CCch--hhhhhccCCCcchhhccc-------ccceeeeeeeeCCccceeEEe
Q 013416 220 PPRP--LRRFLQGLDPRSTANLFS-------NSVLCVMEKTINNEDCFILKV 262 (443)
Q Consensus 220 ppRP--LRR~lQGLDPr~tA~lF~-------~A~~cvGEk~I~geDCFiLKL 262 (443)
|-|| |+++++-|.|+..-+.|. .|..+||-+.-+.++++.=+|
T Consensus 18 PErpGal~~Fl~~l~~~~nITeF~YR~~~~~~a~VlvGi~~~~~~~~l~~~L 69 (91)
T d1tdja3 18 PESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGDHEPDFETRL 69 (91)
T ss_dssp CCCTTHHHHHHHHHCSCCCCCEEECBCTTTCSSCEEEEEC------------
T ss_pred CCCccHHHHHHHHhCCCCcEEEEEEeecCCCeeeEEEEEecCchhHHHHHHH
Confidence 5688 999999999997667775 344488988777777655433
No 4
>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.74 E-value=22 Score=27.91 Aligned_cols=62 Identities=19% Similarity=0.403 Sum_probs=38.1
Q ss_pred EEccCCceeeeecCCCcCccCCCCCch--hhhhhccCCCcchhhcccccceeeeeeeeCCccceeEEeecchhhHhhhcC
Q 013416 197 SAGSDGKLAWRQTPWHHSHASRGPPRP--LRRFLQGLDPRSTANLFSNSVLCVMEKTINNEDCFILKVEAEASALRARST 274 (443)
Q Consensus 197 ~AGsDGkvaWRhtPw~~sHAakGppRP--LRR~lQGLDPr~tA~lF~~A~~cvGEk~I~geDCFiLKL~ad~~~l~ars~ 274 (443)
+.|-||...|..||=. ++-| ++..+..++..+ .++.+-. .++|+.|++|+- |+..+.+|..
T Consensus 20 I~g~dg~svwA~S~gf-------~~~~~E~~~i~~~f~~~~--~~~~~Gi------~i~G~KY~~~~~--d~~~i~~kk~ 82 (125)
T d1ypra_ 20 IYSRAGDAVWATSGGL-------SLQPNEIGEIVQGFDNPA--GLQSNGL------HIQGQKFMLLRA--DDRSIYGRHD 82 (125)
T ss_dssp EEETTSCCEEEEESCC-------CCCHHHHHHHHHHTTCTH--HHHHHCE------EETTEEEEEEEE--CSSEEEEEET
T ss_pred EEeCCCCeeEEECCCC-------CCCHHHHHHHHHHhcCcc--hhccCCE------EEcCeEEEEEec--CCCeEEEEeC
Confidence 6688999999999843 2344 455555543222 2333334 577889999984 4455666654
Q ss_pred C
Q 013416 275 S 275 (443)
Q Consensus 275 ~ 275 (443)
.
T Consensus 83 ~ 83 (125)
T d1ypra_ 83 A 83 (125)
T ss_dssp T
T ss_pred C
Confidence 4
No 5
>d2byoa1 b.125.1.3 (A:20-207) Putative lipoprotein LppX {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=19.11 E-value=52 Score=27.49 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=46.5
Q ss_pred EEEEEeeCcEEEEccCCceeeeecCCCcCccCCCCCchhhhhhccCCCcch-hhc---ccccceeeeeeeeCCccceeEE
Q 013416 186 CLELVVSGRKISAGSDGKLAWRQTPWHHSHASRGPPRPLRRFLQGLDPRST-ANL---FSNSVLCVMEKTINNEDCFILK 261 (443)
Q Consensus 186 ~~ELvV~G~KV~AGsDGkvaWRhtPw~~sHAakGppRPLRR~lQGLDPr~t-A~l---F~~A~~cvGEk~I~geDCFiLK 261 (443)
-+|.++-|-++-+..+++ |..-+- .+.+-|- +=|||... ++| +.+.. .+|+++|||..|.++.
T Consensus 63 ~~~~v~~d~~~Y~~~~~~--w~~~~~------~~~~d~~----~~ldP~~gl~~lLa~~~d~~-~~G~EtvdG~~t~~~t 129 (188)
T d2byoa1 63 GVPFRVQGDNISVKLFDD--WSNLGS------ISELSTS----RVLDPAAGVTQLLSGVTNLQ-AQGTEVIDGISTTKIT 129 (188)
T ss_dssp EEEEEEETTEEEEEETTE--EEEEEE------HHHHHHH----TC-----CCCCCSTTCEEEE-EEEEEEETTEEEEEEE
T ss_pred cEEEEEECCEEEEcCCCc--hhhcCc------cccCCHh----hhcChhHhHHHHhhhcCCce-eccceEECCEEEEEEE
Confidence 488888888888877653 443211 1111111 12577763 333 23555 9999999999999999
Q ss_pred eecchhhHhhhcCC
Q 013416 262 VEAEASALRARSTS 275 (443)
Q Consensus 262 L~ad~~~l~ars~~ 275 (443)
-+.+...+..=..+
T Consensus 130 gtv~~~~~~~~~~~ 143 (188)
T d2byoa1 130 GTIPASSVKMLDPG 143 (188)
T ss_dssp EEECHHHHHHHCTT
T ss_pred EEeCHHHHHhhccc
Confidence 99998887665443
No 6
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.04 E-value=26 Score=29.89 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=12.7
Q ss_pred CCccccccEEEEEecC
Q 013416 167 VGGGEMGGFVLWQKRP 182 (443)
Q Consensus 167 ~~~~e~GgFVlWQ~~P 182 (443)
..++-.||||+|++.+
T Consensus 154 AcRSi~Gg~v~W~~g~ 169 (188)
T d1fi4a1 154 ACRSLFGGYVAWEMGK 169 (188)
T ss_dssp GGGGGSSSEEEEECCS
T ss_pred hhhhhcCCeeEeccCC
Confidence 4557899999999764
No 7
>d2i74a1 b.18.1.29 (A:472-651) Peptide:N-glycanase, PNGase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.90 E-value=76 Score=27.09 Aligned_cols=38 Identities=32% Similarity=0.597 Sum_probs=22.9
Q ss_pred ccEEEEEecCCeEEEEEEe----------eC---cEE---EEccCCceeeeecC
Q 013416 173 GGFVLWQKRPDLWCLELVV----------SG---RKI---SAGSDGKLAWRQTP 210 (443)
Q Consensus 173 GgFVlWQ~~Pd~W~~ELvV----------~G---~KV---~AGsDGkvaWRhtP 210 (443)
+|=|.|+..-+.=|+++.- .| -.| ..|.||.+||-|+=
T Consensus 104 ~G~v~~~~~~~~~~~~i~~d~~~~~~~~~~ga~~~~i~a~LsGG~g~~aWQHaQ 157 (180)
T d2i74a1 104 SGSVRWKLRSETAQVNLLGDKNLRSYNDFSGATEVTLEAELSRGDGDVAWQHTQ 157 (180)
T ss_dssp TCEEEEEEECSSCEEEECCBSCCEEECTTTTCSEEEEEEEEECCCGGGGGGSEE
T ss_pred CCEEEEEEEcCCceEEecCCCceeEecCcCCCeEEEEEEEEeCCCccccchhhe
Confidence 4555666655555555432 23 223 34889999998874
No 8
>d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.57 E-value=56 Score=24.20 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=15.3
Q ss_pred cCCChhHHHHHHHhhCCC
Q 013416 64 FGGKNTEIQLLLGVVGAP 81 (443)
Q Consensus 64 ~~~~~~dl~lLLgvvGaP 81 (443)
...+-+|||.|||-.|..
T Consensus 12 ~sfRVsELQ~LLg~~gr~ 29 (65)
T d1v66a_ 12 MSLRVSELQVLLGYAGRN 29 (65)
T ss_dssp TTCCHHHHHHHHHTTCCC
T ss_pred HHHhHHHHHHHHHHcCCC
Confidence 357889999999999975
No 9
>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein) {Acanthamoeba castellanii [TaxId: 5755]}
Probab=11.15 E-value=59 Score=25.27 Aligned_cols=58 Identities=10% Similarity=0.257 Sum_probs=32.4
Q ss_pred EEEccCCceeeeecCCCcCccCCCCCch--hhhhhccC-CCcchhhcccccceeeeeeeeCCccceeEEeecchhhHhhh
Q 013416 196 ISAGSDGKLAWRQTPWHHSHASRGPPRP--LRRFLQGL-DPRSTANLFSNSVLCVMEKTINNEDCFILKVEAEASALRAR 272 (443)
Q Consensus 196 V~AGsDGkvaWRhtPw~~sHAakGppRP--LRR~lQGL-DPr~tA~lF~~A~~cvGEk~I~geDCFiLKL~ad~~~l~ar 272 (443)
.+.|-||.+ |-.||=. ++-| +...+..+ ||. .++.+-+ .++|+.|++|+- |+..+.++
T Consensus 20 aI~g~DG~v-wA~S~gf-------~~~~~E~~~i~~~f~d~~---~~~~~Gi------~i~G~KY~~~~~--d~~~i~~k 80 (125)
T d1acfa_ 20 AILGLDGNT-WATSAGF-------AVTPAQGTTLAGAFNNAD---AIRAGGF------DLAGVHYVTLRA--DDRSIYGK 80 (125)
T ss_dssp EEEETTSCE-EEECTTC-------CCCHHHHHHHHHHHHCCH---HHHHHCE------EETTEEEEEEEE--SSSEEEEE
T ss_pred EEEcCCCCE-EEECCCC-------CCCHHHHHHHHHhccChh---hhhhCCE------EECCeEEEEEec--CCCEEEEE
Confidence 355889975 9988843 2333 44444333 332 2333333 678888999984 44444444
No 10
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.97 E-value=29 Score=27.16 Aligned_cols=11 Identities=36% Similarity=0.275 Sum_probs=9.3
Q ss_pred cccccccCccc
Q 013416 15 ETVLEVPIPEE 25 (443)
Q Consensus 15 ~tvlEvPiPee 25 (443)
+|-||||+|++
T Consensus 70 gT~LeVPdp~~ 80 (101)
T d2azeb1 70 ETQLQAVDSSE 80 (101)
T ss_dssp TCEEEEEECSS
T ss_pred CCEEeecCCCc
Confidence 57899999985
Done!