Query 013417
Match_columns 443
No_of_seqs 116 out of 136
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:11:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz3_A EMSY protein; chromatin 99.9 4.3E-25 1.5E-29 188.0 9.9 74 47-121 15-88 (102)
2 2fmm_E Protein EMSY; ENT domai 99.9 8.7E-24 3E-28 186.9 9.7 73 47-120 7-79 (133)
3 2equ_A PHD finger protein 20-l 97.3 0.00043 1.5E-08 55.7 6.1 55 225-282 8-62 (74)
4 2l8d_A Lamin-B receptor; DNA b 97.0 0.00049 1.7E-08 54.8 3.9 40 229-268 12-51 (66)
5 2dig_A Lamin-B receptor; tudor 97.0 0.00049 1.7E-08 55.0 3.7 41 228-268 14-54 (68)
6 1mhn_A SurviVal motor neuron p 96.8 0.0016 5.3E-08 49.4 4.8 54 229-282 6-59 (59)
7 4a4f_A SurviVal of motor neuro 96.5 0.004 1.4E-07 48.0 5.6 54 224-277 6-59 (64)
8 1g5v_A SurviVal motor neuron p 96.2 0.005 1.7E-07 50.9 4.9 54 226-279 10-63 (88)
9 3p8d_A Medulloblastoma antigen 96.2 0.0051 1.7E-07 49.0 4.5 40 226-267 6-45 (67)
10 2ldm_A Uncharacterized protein 95.1 0.001 3.4E-08 54.8 0.0 49 228-279 8-56 (81)
11 2g3r_A Tumor suppressor P53-bi 96.0 0.0033 1.1E-07 55.4 2.7 43 225-268 3-45 (123)
12 2d9t_A Tudor domain-containing 95.9 0.016 5.6E-07 46.3 6.5 57 226-282 9-65 (78)
13 3qii_A PHD finger protein 20; 95.9 0.0074 2.5E-07 50.1 4.5 40 226-267 21-60 (85)
14 3pnw_C Tudor domain-containing 95.8 0.0082 2.8E-07 48.2 4.4 57 226-282 17-73 (77)
15 3s6w_A Tudor domain-containing 95.4 0.016 5.5E-07 42.9 4.3 39 229-267 4-43 (54)
16 2eqj_A Metal-response element- 95.1 0.013 4.6E-07 46.7 3.1 49 228-281 15-63 (66)
17 1ssf_A Transformation related 95.0 0.018 6.3E-07 52.4 4.3 42 226-268 8-49 (156)
18 2eqk_A Tudor domain-containing 93.0 0.08 2.7E-06 44.0 3.9 58 224-282 19-76 (85)
19 2eko_A Histone acetyltransfera 92.1 0.21 7.3E-06 41.3 5.3 65 226-291 9-78 (87)
20 2m0o_A PHD finger protein 1; t 91.7 0.62 2.1E-05 38.3 7.5 51 226-281 26-76 (79)
21 2diq_A Tudor and KH domain-con 91.6 0.55 1.9E-05 38.8 7.5 56 226-282 32-87 (110)
22 3fdr_A Tudor and KH domain-con 91.4 0.21 7.1E-06 40.2 4.5 54 226-281 27-81 (94)
23 4hcz_A PHD finger protein 1; p 90.1 0.23 7.8E-06 38.8 3.4 49 228-281 5-53 (58)
24 2xk0_A Polycomb protein PCL; t 88.7 0.74 2.5E-05 37.0 5.5 48 225-279 14-61 (69)
25 2wac_A CG7008-PA; unknown func 86.0 0.75 2.6E-05 41.0 4.7 55 226-282 51-105 (218)
26 2e5q_A PHD finger protein 19; 85.5 0.78 2.7E-05 36.3 3.9 51 228-283 9-59 (63)
27 3ntk_A Maternal protein tudor; 85.3 0.4 1.4E-05 42.5 2.5 53 226-282 47-100 (169)
28 2rnz_A Histone acetyltransfera 84.2 2.7 9.4E-05 35.2 6.9 58 228-288 27-87 (94)
29 2ro0_A Histone acetyltransfera 82.9 0.86 2.9E-05 38.0 3.3 58 228-288 25-85 (92)
30 4b9w_A TDRD1, tudor domain-con 79.2 2.1 7.3E-05 38.6 4.9 56 226-282 65-120 (201)
31 2e5p_A Protein PHF1, PHD finge 78.0 1.4 4.9E-05 35.3 2.9 49 227-280 10-58 (68)
32 4b9x_A TDRD1, tudor domain-con 75.1 2.4 8.2E-05 39.0 4.1 56 226-282 65-120 (226)
33 2qqr_A JMJC domain-containing 68.5 2.3 7.7E-05 37.1 2.1 48 228-285 7-54 (118)
34 2hqx_A P100 CO-activator tudor 66.9 5.4 0.00018 36.6 4.5 54 226-282 65-119 (246)
35 2xdp_A Lysine-specific demethy 63.2 2.5 8.6E-05 37.0 1.4 47 228-284 8-54 (123)
36 2eqm_A PHD finger protein 20-l 62.5 15 0.00051 30.0 5.9 48 227-277 20-68 (88)
37 1wgs_A MYST histone acetyltran 61.1 7.5 0.00026 34.0 4.1 51 227-279 13-67 (133)
38 3ask_A E3 ubiquitin-protein li 55.7 11 0.00038 35.9 4.5 61 228-288 4-75 (226)
39 4e9k_A Hypothetical protein; P 49.9 7.4 0.00025 37.7 2.3 39 240-279 167-206 (241)
40 3dlm_A Histone-lysine N-methyl 48.9 11 0.00037 35.9 3.2 49 226-278 68-120 (213)
41 3h8z_A FragIle X mental retard 48.6 11 0.00039 33.0 3.1 52 225-279 59-114 (128)
42 1qsd_A Protein (beta-tubulin b 48.4 27 0.00094 29.5 5.3 37 359-395 31-70 (106)
43 3bdl_A Staphylococcal nuclease 47.8 15 0.00053 38.2 4.5 54 226-282 411-465 (570)
44 2guz_B Mitochondrial import in 45.1 19 0.00064 27.9 3.5 31 353-383 22-59 (65)
45 2lcc_A AT-rich interactive dom 43.4 8.7 0.0003 30.7 1.4 51 228-279 7-61 (76)
46 1b34_A Protein (small nuclear 42.2 21 0.00072 30.3 3.7 33 225-258 7-39 (119)
47 3m9q_A Protein MALE-specific l 42.0 15 0.00053 31.1 2.8 46 228-275 21-77 (101)
48 3sd4_A PHD finger protein 20; 42.0 26 0.00089 26.9 3.9 46 228-276 14-60 (69)
49 2cp9_A EF-TS, EF-TSMT, elongat 41.1 17 0.00058 28.5 2.7 39 352-396 9-47 (64)
50 3mxz_A Tubulin-specific chaper 40.9 41 0.0014 28.9 5.4 36 360-395 36-73 (116)
51 2k48_A Nucleoprotein; viral pr 39.6 23 0.00078 30.6 3.5 30 370-399 34-63 (107)
52 1h7c_A Tubulin-specific chaper 38.2 19 0.00065 30.5 2.8 41 359-399 34-83 (108)
53 2ic6_A Nucleocapsid protein; h 38.2 23 0.0008 29.0 3.2 30 370-399 4-33 (78)
54 3m9p_A MALE-specific lethal 3 38.1 23 0.00078 30.6 3.3 50 224-275 17-77 (110)
55 2f5k_A MORF-related gene 15 is 37.4 20 0.00069 30.3 2.8 47 228-277 24-72 (102)
56 2l2l_A Transcriptional repress 36.6 26 0.00088 25.8 2.9 15 79-93 5-19 (43)
57 3gpv_A Transcriptional regulat 34.5 32 0.0011 29.8 3.7 46 351-396 71-116 (148)
58 1q06_A Transcriptional regulat 34.0 34 0.0012 29.1 3.8 45 352-396 56-100 (135)
59 2ic9_A Nucleocapsid protein; h 32.4 30 0.001 29.3 3.0 29 370-398 4-32 (96)
60 1y96_A Gemin6, SIP2, GEM-assoc 32.1 29 0.001 28.6 2.9 46 224-272 11-56 (86)
61 2lrq_A Protein MRG15, NUA4 com 37.6 10 0.00034 31.0 0.0 48 228-278 14-63 (85)
62 4fi5_A Nucleoprotein; structur 30.8 30 0.001 30.1 2.9 34 366-399 17-50 (113)
63 2ou3_A Tellurite resistance pr 29.6 2.1E+02 0.007 24.6 8.1 55 61-116 97-151 (161)
64 2vc8_A Enhancer of mRNA-decapp 28.4 53 0.0018 27.2 3.8 39 224-262 3-41 (84)
65 3gp4_A Transcriptional regulat 28.3 41 0.0014 29.0 3.3 46 351-396 57-102 (142)
66 3rpp_A Glutathione S-transfera 27.8 1.3E+02 0.0046 27.1 6.9 60 57-118 113-172 (234)
67 1tr8_A Conserved protein (MTH1 27.2 19 0.00066 30.3 1.0 22 373-394 80-101 (102)
68 3h8z_A FragIle X mental retard 26.9 44 0.0015 29.3 3.2 24 239-264 13-36 (128)
69 1r4w_A Glutathione S-transfera 26.6 1.4E+02 0.0049 26.4 6.7 58 60-119 116-173 (226)
70 1ub1_A MECP2, attachment regio 26.5 83 0.0028 27.9 5.0 12 316-327 119-130 (133)
71 3mea_A SAGA-associated factor 26.5 69 0.0024 29.5 4.7 41 228-268 118-159 (180)
72 3ih6_A Putative zinc protease; 26.2 82 0.0028 26.6 4.8 33 352-384 97-132 (197)
73 1q08_A Zn(II)-responsive regul 25.5 66 0.0022 25.2 3.8 43 354-396 17-60 (99)
74 3r4i_A Citrate lyase; TIM beta 24.8 49 0.0017 32.6 3.5 31 349-383 253-283 (339)
75 3uul_A Utrophin; spectrin repe 23.3 79 0.0027 24.7 3.9 31 354-384 16-46 (118)
76 1use_A VAsp, vasodilator-stimu 21.7 37 0.0013 25.3 1.5 25 80-116 13-37 (45)
77 3hh0_A Transcriptional regulat 21.5 91 0.0031 26.9 4.2 41 353-396 61-101 (146)
78 2q22_A Uncharacterized protein 21.5 57 0.0019 29.1 3.0 33 367-399 6-51 (139)
79 2bud_A Males-absent on the fir 20.2 1.8E+02 0.0062 24.2 5.6 54 224-279 12-70 (92)
No 1
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=99.92 E-value=4.3e-25 Score=187.96 Aligned_cols=74 Identities=28% Similarity=0.435 Sum_probs=70.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHHhhc
Q 013417 47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKAS 121 (443)
Q Consensus 47 ~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~r~~g 121 (443)
.++++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++.+|+.|++||++..+.
T Consensus 15 ~~e~~~~l~~LEleAY~svlrAf~AqG-~Lsweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~Ire~~~g~ 88 (102)
T 1uz3_A 15 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGP 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhcchHHHHHHHHHhcCC
Confidence 359999999999999999999999995 59999999999999999999999999999999999999999998765
No 2
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=99.90 E-value=8.7e-24 Score=186.95 Aligned_cols=73 Identities=29% Similarity=0.439 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHHhh
Q 013417 47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120 (443)
Q Consensus 47 ~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~r~~ 120 (443)
.++++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++.+|+.|++||++..+
T Consensus 7 ~~e~~~~lr~LEleAY~svl~Af~AqG-~LSweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~I~~~~~g 79 (133)
T 2fmm_E 7 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSG 79 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhHHHHHHHHHhhcC
Confidence 458999999999999999999999995 5999999999999999999999999999999999999999998743
No 3
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.28 E-value=0.00043 Score=55.69 Aligned_cols=55 Identities=20% Similarity=0.424 Sum_probs=47.7
Q ss_pred CCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013417 225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (443)
Q Consensus 225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe 282 (443)
...-||-+|..+|. |+.||+|+|+..+.. +...++|++. -.|+-...+|+-|+++
T Consensus 8 ~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dy-n~e~v~~~~lrplp~~ 62 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDG-VIRCLKRMHIKAMPED 62 (74)
T ss_dssp CCCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTS-CEEEECGGGEECCCGG
T ss_pred CCCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecC-CeEEecHHHCeeCChh
Confidence 35678999999999 999999999999875 8899999999 7788888888888653
No 4
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.02 E-value=0.00049 Score=54.82 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=37.2
Q ss_pred ccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 013417 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (443)
Q Consensus 229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ 268 (443)
||-.|+-|||-|+.||+|.||+++..+-.+.+.|-.+|.+
T Consensus 12 vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e 51 (66)
T 2l8d_A 12 DGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTEL 51 (66)
T ss_dssp SSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEE
T ss_pred cCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence 6789999999999999999999999999999999997765
No 5
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.99 E-value=0.00049 Score=55.05 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=37.4
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 013417 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (443)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ 268 (443)
-||-.|+-|||-|+.||+|.||+++..+-.+.+.|-.+|.+
T Consensus 14 ~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e 54 (68)
T 2dig_A 14 ADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTEL 54 (68)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEE
T ss_pred ecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence 36789999999999999999999999999999999997765
No 6
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=96.78 E-value=0.0016 Score=49.37 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=42.8
Q ss_pred ccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013417 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (443)
Q Consensus 229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe 282 (443)
+|-.+..+|.+|+.||.|+|+..+...+...+.|.+---.|+=..-+|+.+++|
T Consensus 6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~~ 59 (59)
T 1mhn_A 6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 59 (59)
T ss_dssp TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTCC
T ss_pred cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCCC
Confidence 677899999999999999999998878889999977444455556666666553
No 7
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=96.52 E-value=0.004 Score=47.96 Aligned_cols=54 Identities=30% Similarity=0.427 Sum_probs=42.2
Q ss_pred cCCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccc
Q 013417 224 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLK 277 (443)
Q Consensus 224 ~~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~ 277 (443)
....-+|-.+..+|.+|+.||.|+|+..+.+.+...+.|..---.|+=.+-+|+
T Consensus 6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lr 59 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLK 59 (64)
T ss_dssp SSCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEE
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcE
Confidence 346678999999999999999999999998888899999875444443333333
No 8
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.22 E-value=0.005 Score=50.93 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=43.1
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccC
Q 013417 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~ei 279 (443)
..-||-.|..+|.+|+.||.|+|+..+...+...|+|..---.|+-..-+|+-+
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~ 63 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP 63 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCC
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccC
Confidence 456788999999999999999999999887889999976555555555555544
No 9
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=96.15 E-value=0.0051 Score=48.97 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=35.3
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCc
Q 013417 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA 267 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~ 267 (443)
.=.||-+|..+| .|+.||+|.|+..+.. +.+.++|+.++.
T Consensus 6 ~~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~ 45 (67)
T 3p8d_A 6 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVV 45 (67)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCE
T ss_pred ccccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCce
Confidence 335889999999 9999999999999988 789999999665
No 10
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.06 E-value=0.001 Score=54.75 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=38.3
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccC
Q 013417 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (443)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~ei 279 (443)
-+|-+|..+|. |+.||.|+|+..+. .+...++|+++ -.|+-.+-+|+-+
T Consensus 8 kvGd~clAkws-Dg~wY~A~I~~v~~-~~~y~V~F~DG-n~E~V~~s~LrPl 56 (81)
T 2ldm_A 8 QINEQVLASWS-DSRFYPAKVTAVNK-DGTYTVKFYDG-VVQTVKHIHVKAF 56 (81)
Confidence 46889999999 99999999999985 46899999884 4455555555544
No 11
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=95.95 E-value=0.0033 Score=55.37 Aligned_cols=43 Identities=26% Similarity=0.505 Sum_probs=37.8
Q ss_pred CCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 013417 225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (443)
Q Consensus 225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ 268 (443)
..++||.+|..+|+++..||-|+|+.+ ...+++.|.+|++...
T Consensus 3 ~~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~ 45 (123)
T 2g3r_A 3 MNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC 45 (123)
T ss_dssp --CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEE
T ss_pred CccccceEEEEEeccCCcCcccEEEEe-ccCCeEEEEEcCCCee
Confidence 368999999999998889999999984 7889999999999974
No 12
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=95.93 E-value=0.016 Score=46.31 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=47.7
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013417 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe 282 (443)
..-+|..+..+|.+|+.||.|+|+..+...+...|.|-+---.|+=..-+|+.|+++
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ 65 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE 65 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHH
Confidence 467889999999999999999999998877888888877666667777788888765
No 13
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=95.91 E-value=0.0074 Score=50.14 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=36.2
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCc
Q 013417 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA 267 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~ 267 (443)
.=.||-+|..+| .|+.||.|.|+..+.. +.+.+.|+.++.
T Consensus 21 ~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~ 60 (85)
T 3qii_A 21 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVV 60 (85)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCE
T ss_pred ccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCe
Confidence 557899999999 9999999999999987 789999999665
No 14
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=95.84 E-value=0.0082 Score=48.17 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=45.0
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013417 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe 282 (443)
..-+|-.+..+|.+|+.||.|+|+..+...+...|.|-+---.|+=..-+|+.|+++
T Consensus 17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~ 73 (77)
T 3pnw_C 17 MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE 73 (77)
T ss_dssp TCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence 356788999999999999999999999877888888877555667677777877765
No 15
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=95.40 E-value=0.016 Score=42.87 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=31.1
Q ss_pred ccceeecccCCCCCceeEEEeecCCCCCceeeeecC-CCc
Q 013417 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTA 267 (443)
Q Consensus 229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~-~t~ 267 (443)
+|-.+..+|.+|+.||.|+|+..+...+...+.|.+ ++.
T Consensus 4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~ 43 (54)
T 3s6w_A 4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNY 43 (54)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCE
T ss_pred CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCe
Confidence 577888999999999999999999877778888865 443
No 16
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=95.06 E-value=0.013 Score=46.67 Aligned_cols=49 Identities=27% Similarity=0.519 Sum_probs=43.6
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCc
Q 013417 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (443)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisP 281 (443)
-||.-|..+| .|.-||+|+|+.-|..+|.-.|.|.+++.- ||..++|.+
T Consensus 15 ~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~----w~~~kdi~~ 63 (66)
T 2eqj_A 15 EEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKS----WVLWKDIQT 63 (66)
T ss_dssp CTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTEEC
T ss_pred cCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEE----EEEeecccc
Confidence 5788899999 999999999999999999999999999875 887777744
No 17
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=95.03 E-value=0.018 Score=52.42 Aligned_cols=42 Identities=26% Similarity=0.519 Sum_probs=38.4
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 013417 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ 268 (443)
+++||.+|..+|.+++.||-|+|+.+ ...+++.+.+|++...
T Consensus 8 ~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k 49 (156)
T 1ssf_A 8 NSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC 49 (156)
T ss_dssp CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEE
T ss_pred cchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCee
Confidence 67999999999999999999999996 6778899999999975
No 18
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.99 E-value=0.08 Score=43.99 Aligned_cols=58 Identities=10% Similarity=0.070 Sum_probs=48.4
Q ss_pred cCCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013417 224 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (443)
Q Consensus 224 ~~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe 282 (443)
....-+|.-|..+.+++|.||.|.|..-...+--|-+.||.|+.+ +--|-+|+.++|.
T Consensus 19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~-~V~~~~LR~L~~~ 76 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVEL-VVNVDCLRKLEEN 76 (85)
T ss_dssp CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEE-EEETTTEEECCHH
T ss_pred ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEE-EEEccccccCCHH
Confidence 446677888999999999999999999999999999999999974 4456677777544
No 19
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.08 E-value=0.21 Score=41.26 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=48.1
Q ss_pred CccccceeecccC---CCCCceeEEEeecCCCCC--ceeeeecCCCccccchhhccccCCccCccccCCCC
Q 013417 226 NPLIGRKVWTRWP---EDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEISPEDIKWEGDEP 291 (443)
Q Consensus 226 ~~LIGrkV~~~WP---dDn~wyEavItdYn~~tg--~H~LvYD~~t~~ETwEWVdL~eisPedI~W~~e~p 291 (443)
.--||-||..+++ .++.||+|.|.+-+...+ ++-|-|.--+.. --|||....|.-..++|...++
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkR-lDEWV~~~rl~~~~~~~p~~~~ 78 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNRR-LDEWVTHERLDLKKIQFPKKEA 78 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCSC-CCEEECTTTBCGGGCCCCCCSC
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCcc-cccccCHhHcccccccCCCCCC
Confidence 4568999999997 589999999999887543 566677654432 2379999998777788875433
No 20
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=91.72 E-value=0.62 Score=38.28 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=43.9
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCc
Q 013417 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisP 281 (443)
.=-+|.-|-.+| .|.-||-|+|+.-|...+...|.|++++.- ||..++|.+
T Consensus 26 ~f~eGeDVLarw-sDGlfYLGTI~kV~~~~e~ClV~F~D~S~~----W~~~kdi~~ 76 (79)
T 2m0o_A 26 RLWEGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP 76 (79)
T ss_dssp CCCTTCEEEBCC-TTSCCCEEEEEEEETTTTEEEEEETTSCEE----EEETTTBCC
T ss_pred eeccCCEEEEEe-cCCCEEeEEEEEeccCCCEEEEEEcCCCeE----EEEeecccc
Confidence 445788899999 669999999999999999999999999986 888888754
No 21
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=91.64 E-value=0.55 Score=38.84 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=39.7
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013417 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe 282 (443)
..-+|.-+-.+|.+|+.||.|+|+..... +.-.|.|-+---.|+-.+-+|+.+.++
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~~~Lr~l~~~ 87 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKDLRALRSD 87 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECGGGCEECCHH
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEehHHhhcCcHH
Confidence 45688889999999999999999999874 444455544333355556666766554
No 22
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=91.40 E-value=0.21 Score=40.24 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=38.0
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCccccchhhccccCCc
Q 013417 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISP 281 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~ETwEWVdL~eisP 281 (443)
..-+|.-+-.+|++|+.||.|.|+.... ++.-.|.| |.|+. |+-..-+|+.+.+
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~-e~v~~~~lr~l~~ 81 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDN-GDCPLKDLRALRS 81 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCE-EEECGGGCEECCG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCe-EEEEHHHhhhcCH
Confidence 4568889999999999999999999975 34455555 44443 4444555666654
No 23
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=90.11 E-value=0.23 Score=38.77 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=41.8
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCc
Q 013417 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (443)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisP 281 (443)
-+|..|-.+|-| .-||-|+|..-|...+...+.+++++.- ||-+++|.+
T Consensus 5 ~~GedVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D~s~~----W~~~kdi~~ 53 (58)
T 4hcz_A 5 WEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP 53 (58)
T ss_dssp CTTCEEEEECTT-SCEEEEEEEEEETTTTEEEEEETTSCEE----EEEGGGEEE
T ss_pred ccCCEEEEEecC-CCEEeEEEEEEecCCCEEEEEEcCCCeE----EEEhHHccc
Confidence 357789999966 9999999999999999999999999975 777776644
No 24
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=88.73 E-value=0.74 Score=37.02 Aligned_cols=48 Identities=15% Similarity=0.374 Sum_probs=36.0
Q ss_pred CCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccC
Q 013417 225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (443)
Q Consensus 225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~ei 279 (443)
..=.+|.-|-.+|-| .-||-|+|++- .++.-.|.|++++.- ||-+++|
T Consensus 14 ~~~~~geDVL~rw~D-G~fYLGtIVd~--~~~~ClV~FeD~S~~----Wv~~kdi 61 (69)
T 2xk0_A 14 VTYALQEDVFIKCND-GRFYLGTIIDQ--TSDQYLIRFDDQSEQ----WCEPDKL 61 (69)
T ss_dssp CCCCTTCEEEEECTT-SCEEEEEEEEE--CSSCEEEEETTCCEE----EECTTTE
T ss_pred cccccCCeEEEEecC-CCEEEEEEEec--CCceEEEEecCCcce----eeeHHHH
Confidence 345678899999965 99999999874 467777888999875 6654443
No 25
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=86.04 E-value=0.75 Score=41.04 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=40.5
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013417 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe 282 (443)
.+-+|..+-.+|.+|+.||.|+|+.... +.-.+.|-+---.|+..+-+|+.++++
T Consensus 51 ~~~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~~l~~l~~~ 105 (218)
T 2wac_A 51 TPKRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPTNRLAALPPA 105 (218)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGGGEEECCGG
T ss_pred cCCcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEchHHcccCChh
Confidence 3557888999999999999999999876 555555544333356667778887654
No 26
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.51 E-value=0.78 Score=36.30 Aligned_cols=51 Identities=24% Similarity=0.448 Sum_probs=41.8
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCccC
Q 013417 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPED 283 (443)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPed 283 (443)
.+|.-|-.+| .|.-||-|+|+.-|...+.-.+.|.+++.- ||..++|.+-.
T Consensus 9 ~eGqdVLarW-sDGlfYlgtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi~~~~ 59 (63)
T 2e5q_A 9 TEGQYVLCRW-TDGLYYLGKIKRVSSSKQSCLVTFEDNSKY----WVLWKDIQHAG 59 (63)
T ss_dssp CTTCEEEEEC-TTSCEEEEEECCCCSTTSEEEEEETTSCEE----EEEGGGEECCS
T ss_pred ecCCEEEEEe-cCCCEEEEEEEEEecCCCEEEEEEccCcee----EEEeecccccC
Confidence 4677888999 568999999999999888888888888875 88777775543
No 27
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=85.33 E-value=0.4 Score=42.49 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=38.0
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCccccchhhccccCCcc
Q 013417 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE 282 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~ETwEWVdL~eisPe 282 (443)
..-+|..+-.+|++|+.||.|.|+...+.. .-.+.| |.|+.+. +=+|+.+.++
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~---v~~lr~l~~~ 100 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAV---TQQFRQLPEE 100 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEE---ESCEECCCHH
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEE---hhhhhccCHH
Confidence 345677888999999999999999998854 445555 6666544 3466666543
No 28
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=84.19 E-value=2.7 Score=35.24 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=42.0
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCC--ceeeeecCCCccccchhhccccCCcc-CccccC
Q 013417 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEISPE-DIKWEG 288 (443)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg--~H~LvYD~~t~~ETwEWVdL~eisPe-dI~W~~ 288 (443)
-||-+|..++ ++.||+|.|.+-....+ ++-|-|.--+.. --|||....|.-. +++|..
T Consensus 27 ~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkR-lDEWV~~~RI~l~~~v~~p~ 87 (94)
T 2rnz_A 27 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKR-LDEWITTDRINLDKEVLYPK 87 (94)
T ss_dssp CTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCST-TCEEEETTTBCSSSCCCCCC
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcc-cccccCHHHcccccCccCCC
Confidence 5899999997 88999999988665443 566666554432 2469999888655 477764
No 29
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=82.87 E-value=0.86 Score=37.97 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=41.6
Q ss_pred cccceeecccCCCCCceeEEEeecCCCC--CceeeeecCCCccccchhhccccCCcc-CccccC
Q 013417 228 LIGRKVWTRWPEDNHFYEAVITDYNPNE--GRHALVYDINTADETWEWVNLKEISPE-DIKWEG 288 (443)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~t--g~H~LvYD~~t~~ETwEWVdL~eisPe-dI~W~~ 288 (443)
-||-+|..++ ++.||+|.|.+-+... -++.|-|.--+.. --|||....|.-. +++|..
T Consensus 25 ~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkR-lDEWV~~~rl~l~~~v~~p~ 85 (92)
T 2ro0_A 25 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKR-LDEWITTDRINLDKEVLYPK 85 (92)
T ss_dssp CTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSCTT-SCEEEEGGGEETTSCEEECC
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcc-cccccCHhHcccccCccCCC
Confidence 4888999987 8899999999866544 3566667654432 2379998888554 477764
No 30
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=79.18 E-value=2.1 Score=38.55 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=39.1
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013417 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe 282 (443)
.+-+|.-+-.++++|+.||.|.|++......-....-|.|+.+ +-.+-+|+.+.++
T Consensus 65 ~~~~G~~c~a~~~~d~~wyRa~V~~~~~~~~~~V~~vDyG~~~-~v~~~~l~~l~~~ 120 (201)
T 4b9w_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVE-EVTTDQLQAILPQ 120 (201)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTCCEE-EECGGGEEECCGG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEccCCEE-EEEHHHhccChHh
Confidence 3457888889999999999999999876544445555777653 3344455555443
No 31
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.96 E-value=1.4 Score=35.27 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=40.6
Q ss_pred ccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCC
Q 013417 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEIS 280 (443)
Q Consensus 227 ~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eis 280 (443)
=-+|.-|-.+|-| .-||-|+|+.-|...+.-.+.|.+++.- ||..++|.
T Consensus 10 f~eGqdVLarWsD-GlfYlGtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi~ 58 (68)
T 2e5p_A 10 LWEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDIS 58 (68)
T ss_dssp CCTTCEEEEECTT-SSEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTEE
T ss_pred cccCCEEEEEecC-CcEEEeEEEEEecCCcEEEEEEccCCee----eeeeeccc
Confidence 3467788899966 9999999999999888888888888875 77766663
No 32
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=75.11 E-value=2.4 Score=39.01 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=39.0
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013417 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe 282 (443)
.+-+|.-+-.++++|+.||.|.|++..+...-.....|.|+.+ +-.+-+|+.+.++
T Consensus 65 ~~~~G~~c~a~~~~d~~WyRa~V~~~~~~~~~~V~~vDyGn~~-~v~~~~l~~l~~~ 120 (226)
T 4b9x_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVE-EVTTDQLQAILPQ 120 (226)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSSSEEEEECTTTCCEE-EEEGGGEECCCGG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEecCCEE-EEEHHHhccChHH
Confidence 3457888889999999999999999876543344445777653 3344556666544
No 33
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=68.46 E-value=2.3 Score=37.12 Aligned_cols=48 Identities=23% Similarity=0.408 Sum_probs=36.2
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCccCcc
Q 013417 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIK 285 (443)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPedI~ 285 (443)
-||.+|+.+|. ++-||.|.|++=.. .--|.+.+|+|+-. .++-||||.
T Consensus 7 ~vGq~V~akh~-ngryy~~~V~~~~~-~~~y~V~F~DgS~s--------~dl~peDIv 54 (118)
T 2qqr_A 7 TAGQKVISKHK-NGRFYQCEVVRLTT-ETFYEVNFDDGSFS--------DNLYPEDIV 54 (118)
T ss_dssp CTTCEEEEECT-TSSEEEEEEEEEEE-EEEEEEEETTSCEE--------EEECGGGBC
T ss_pred ccCCEEEEECC-CCCEEeEEEEEEee-EEEEEEEcCCCCcc--------CCCCHhhcc
Confidence 47899999998 68999999999533 35577778888853 356677663
No 34
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=66.92 E-value=5.4 Score=36.63 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=38.1
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCccccchhhccccCCcc
Q 013417 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE 282 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~ETwEWVdL~eisPe 282 (443)
.+-+|.-+-.+|. |+.||.|+|+...... .-.+.| |.|+. |+-.+-+|+.++++
T Consensus 65 ~~~~G~~c~a~~~-d~~wyRa~V~~~~~~~-~~~V~~vDyGn~-~~v~~~~lr~l~~~ 119 (246)
T 2hqx_A 65 APRRGEFCIAKFV-DGEWYRARVEKVESPA-KIHVFYIDYGNR-EVLPSTRLGTLSPA 119 (246)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEETT-EEEEEETTTCCE-EEECGGGEECCCGG
T ss_pred CCCCCCEEEEEcC-CCCEEEEEEEEEcCCC-eEEEEEEeCCCe-EEEeHHHhhcCCHh
Confidence 4457888899998 8999999999997543 444444 55654 34456677777654
No 35
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=63.21 E-value=2.5 Score=37.04 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=37.1
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCccCc
Q 013417 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDI 284 (443)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPedI 284 (443)
-||.+|+.+|.+ +-||.|.|++=-. .--+.+.||+|+-. .++-||||
T Consensus 8 ~vGq~V~ak~~n-gryy~~~V~~~~~-~~~y~V~F~DgS~s--------~dl~PedI 54 (123)
T 2xdp_A 8 SVGQTVITKHRN-TRYYSCRVMAVTS-QTFYEVMFDDGSFS--------RDTFPEDI 54 (123)
T ss_dssp CTTCCCCCCCCC-CCCCCCEEEEEEE-EEEEEEEETTSCEE--------EEECGGGB
T ss_pred ccCCEEEEECCC-CcEEeEEEEEEee-EEEEEEEcCCCCcc--------CCCCHhHc
Confidence 478899999985 9999999999775 45578888988853 35667777
No 36
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=62.47 E-value=15 Score=30.00 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=36.7
Q ss_pred ccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccc-hhhccc
Q 013417 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETW-EWVNLK 277 (443)
Q Consensus 227 ~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETw-EWVdL~ 277 (443)
=-||-||...-+. +.||+|+||.=+....+-.|-||=-+ ..| |||+..
T Consensus 20 F~vGmkLEA~D~~-~~~~~a~i~~v~~~~~~v~VHfdGW~--~~yDeWv~~d 68 (88)
T 2eqm_A 20 FEIGARLEALDYL-QKWYPSRIEKIDYEEGKMLVHFERWS--HRYDEWIYWD 68 (88)
T ss_dssp CCSSCEEEEECTT-SCEEEEEEEEEETTTTEEEEEESSST--TTEEEEEETT
T ss_pred CCCCCEEEEEcCC-CCeeEEEEEEEeccCCEEEEEECCCC--CcccEEeeCC
Confidence 3588899877655 57999999988877788899998653 344 699755
No 37
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=61.09 E-value=7.5 Score=34.01 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=36.4
Q ss_pred ccccceeecccCCCCCceeEEEeecCC----CCCceeeeecCCCccccchhhccccC
Q 013417 227 PLIGRKVWTRWPEDNHFYEAVITDYNP----NEGRHALVYDINTADETWEWVNLKEI 279 (443)
Q Consensus 227 ~LIGrkV~~~WPdDn~wyEavItdYn~----~tg~H~LvYD~~t~~ETwEWVdL~ei 279 (443)
--||-+|..+|+ |+.||+|.|.+-.. ..-.+.|-|.--+.. --|||....|
T Consensus 13 ~~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR-~DEWV~~~ri 67 (133)
T 1wgs_A 13 VEIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRR-LDEWVDKNRL 67 (133)
T ss_dssp CCTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTTCSS-CCEEECTTTS
T ss_pred cCCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccCcCCC-ceeecChhhc
Confidence 458999999998 67999999988543 334567777643322 1269987776
No 38
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=55.73 E-value=11 Score=35.95 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=41.6
Q ss_pred cccceeecccCCCCCceeEEEeecCCCC---------CceeeeecCCCccccch--hhccccCCccCccccC
Q 013417 228 LIGRKVWTRWPEDNHFYEAVITDYNPNE---------GRHALVYDINTADETWE--WVNLKEISPEDIKWEG 288 (443)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~t---------g~H~LvYD~~t~~ETwE--WVdL~eisPedI~W~~ 288 (443)
-||-.|..++...+.||||.|.++-..+ -.+++.||.-..+++-+ =.+|+--+-..++|..
T Consensus 4 ki~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~irprar~~~~~~~ 75 (226)
T 3ask_A 4 KVNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARARTIIKWQD 75 (226)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEEECCCCBCCGGG
T ss_pred ccCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccccccccccccCCccc
Confidence 3788899999999999999999998743 44667888775553322 2233333445667744
No 39
>4e9k_A Hypothetical protein; PF14717 family protein, DUF4465, structural genomics, joint for structural genomics, JCSG; 2.31A {Bacteroides ovatus}
Probab=49.90 E-value=7.4 Score=37.67 Aligned_cols=39 Identities=21% Similarity=0.486 Sum_probs=29.0
Q ss_pred CCCceeEEEeecCCC-CCceeeeecCCCccccchhhccccC
Q 013417 240 DNHFYEAVITDYNPN-EGRHALVYDINTADETWEWVNLKEI 279 (443)
Q Consensus 240 Dn~wyEavItdYn~~-tg~H~LvYD~~t~~ETwEWVdL~ei 279 (443)
+..||.-+|+-||.. +-+|-|+=+ ...--+|+||||+.+
T Consensus 167 ~gD~Fklti~Gyd~~g~Ve~yLAD~-~~iV~~W~~vDLSsL 206 (241)
T 4e9k_A 167 SNDSFKLTIYNYDKTMHVDCYLAEG-TNLLDQWKWVDLTSL 206 (241)
T ss_dssp TTCEEEEEEEETTSSCEEEEEEEET-TEECCSCEEEECGGG
T ss_pred CCCEEEEEEEEECCCCcEEEEEecC-CEEecceEEEccccc
Confidence 678999999999942 234555542 445589999999988
No 40
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=48.92 E-value=11 Score=35.93 Aligned_cols=49 Identities=20% Similarity=0.437 Sum_probs=38.3
Q ss_pred CccccceeecccCCCC--CceeEEEee--cCCCCCceeeeecCCCccccchhhcccc
Q 013417 226 NPLIGRKVWTRWPEDN--HFYEAVITD--YNPNEGRHALVYDINTADETWEWVNLKE 278 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn--~wyEavItd--Yn~~tg~H~LvYD~~t~~ETwEWVdL~e 278 (443)
.-.||-||-.+|.+.+ .||-|+|.. +.-..-+++|.||++-+. ||.+.+
T Consensus 68 ~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~----Yv~~~~ 120 (213)
T 3dlm_A 68 KLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYAS----YVTQSE 120 (213)
T ss_dssp GCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCEE----EECGGG
T ss_pred EEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCcc----eecCce
Confidence 4578999999999875 899999975 222346999999999875 666665
No 41
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=48.55 E-value=11 Score=32.98 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=35.1
Q ss_pred CCccccceeecccCCCC----CceeEEEeecCCCCCceeeeecCCCccccchhhccccC
Q 013417 225 YNPLIGRKVWTRWPEDN----HFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (443)
Q Consensus 225 ~~~LIGrkV~~~WPdDn----~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~ei 279 (443)
..--+|-+|.+++-.++ .||.|+|+.... ..|.+.|+--.. .-=|||.+..|
T Consensus 59 ~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg--~f~~V~y~~~~~-~~~EiV~~~rl 114 (128)
T 3h8z_A 59 KEITEGDEVEVYSRANEQEPCGWWLARVRMMKG--DFYVIEYAACDA-TYNEIVTLERL 114 (128)
T ss_dssp -CCCTTCEEEEEECC---CCCEEEEEEEEEEET--TEEEEEETTC-----CEEECGGGE
T ss_pred cCCCCCCEEEEEecCCCCCcCccEEEEEEEeeC--CEEEEEEcCCCC-CcceEEehhhe
Confidence 34468999999999877 899999999984 688888765331 12247765544
No 42
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=48.36 E-value=27 Score=29.54 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=26.5
Q ss_pred HHHH--hhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 013417 359 VEKV--FAANHP-DPTDVEKAKRVLKEQELALVNAIAKLE 395 (443)
Q Consensus 359 Verv--f~~~~p-Dp~eiEkAKk~LkehEqaL~dAIArL~ 395 (443)
-+|| |.+.++ |+.+|-+...+|+|.+.-|-|...||.
T Consensus 31 ~~riek~k~~~~~dey~iKkq~evl~Et~~mipd~~~Rl~ 70 (106)
T 1qsd_A 31 EAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIR 70 (106)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3455 556678 999999999999988876655444444
No 43
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=47.75 E-value=15 Score=38.16 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=39.2
Q ss_pred CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCccccchhhccccCCcc
Q 013417 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE 282 (443)
Q Consensus 226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~ETwEWVdL~eisPe 282 (443)
.+-+|.-+-.+|. |+.||.|+|+.... .+.-.+.| |.++. |+-.+-+|+.++++
T Consensus 411 ~~~~G~~c~a~~~-d~~wyRa~I~~v~~-~~~~~V~fvDyGn~-e~v~~~~Lr~l~~~ 465 (570)
T 3bdl_A 411 APRRGEFCIAKFV-DGEWYRARVEKVES-PAKIHVFYIDYGNR-EVLPSTRLGTLSPA 465 (570)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEE-TTEEEEEETTTCCE-EEECGGGEECCCGG
T ss_pred CCCcCCEEEEEEC-CCCEEEEEEEEEcC-CCeEEEEEEeCCCe-EEEEHHHCccCCHH
Confidence 5668999999999 99999999999987 34444555 44554 45556677777654
No 44
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=45.05 E-value=19 Score=27.91 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhhcCCCC-------hhhHHHHHHHHHHH
Q 013417 353 ETLIKEVEKVFAANHPD-------PTDVEKAKRVLKEQ 383 (443)
Q Consensus 353 ~slikeVervf~~~~pD-------p~eiEkAKk~Lkeh 383 (443)
+.+.+=-.|+|..+||| ..+|..||..|..+
T Consensus 22 ~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 22 DKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34444456779999999 88999999999764
No 45
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=43.42 E-value=8.7 Score=30.67 Aligned_cols=51 Identities=27% Similarity=0.369 Sum_probs=36.7
Q ss_pred cccceeecccCCC--CCceeEEEeecCCCCC--ceeeeecCCCccccchhhccccC
Q 013417 228 LIGRKVWTRWPED--NHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEI 279 (443)
Q Consensus 228 LIGrkV~~~WPdD--n~wyEavItdYn~~tg--~H~LvYD~~t~~ETwEWVdL~ei 279 (443)
-||-+|..+|++. ..||+|.|.+-+...+ .+.|-|.--+.. --|||....|
T Consensus 7 ~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr-~DEWV~~~ri 61 (76)
T 2lcc_A 7 LTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVR-YDEWVKADRI 61 (76)
T ss_dssp STTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSCCS-SCEEEEGGGE
T ss_pred CCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcCCC-ceEecChhhc
Confidence 4899999999953 7899999999876555 467777644332 1269876555
No 46
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=42.20 E-value=21 Score=30.35 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=26.2
Q ss_pred CCccccceeecccCCCCCceeEEEeecCCCCCce
Q 013417 225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRH 258 (443)
Q Consensus 225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H 258 (443)
+..++|++|.+.. -++.-|++++..||.--..+
T Consensus 7 L~~~~gk~V~V~L-k~g~~~~G~L~~~D~~MNlv 39 (119)
T 1b34_A 7 LMKLSHETVTIEL-KNGTQVHGTITGVDVSMNTH 39 (119)
T ss_dssp HHTCTTCEEEEEE-TTCCEEEEEEEEECTTCCEE
T ss_pred HHHhCCCEEEEEE-cCCCEEEEEEEEEcccceEE
Confidence 3568899888755 57899999999999876644
No 47
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=41.99 E-value=15 Score=31.05 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=33.1
Q ss_pred cccceeecccCC---CCCceeEEEeecCCCC-------CceeeeecCCCccccc-hhhc
Q 013417 228 LIGRKVWTRWPE---DNHFYEAVITDYNPNE-------GRHALVYDINTADETW-EWVN 275 (443)
Q Consensus 228 LIGrkV~~~WPd---Dn~wyEavItdYn~~t-------g~H~LvYD~~t~~ETw-EWVd 275 (443)
-+|.+|-.+++| .+-+|||.|.+-...+ -.+.|-|.= =+-+| |||-
T Consensus 21 ~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~G--Wn~rwDEWV~ 77 (101)
T 3m9q_A 21 HKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQG--WRPSYDRAVR 77 (101)
T ss_dssp CTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETT--SCGGGCEEEC
T ss_pred cCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCC--CCcCceeecC
Confidence 478899999987 6789999999876532 257777742 33456 5884
No 48
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=41.96 E-value=26 Score=26.92 Aligned_cols=46 Identities=24% Similarity=0.403 Sum_probs=32.9
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccc-hhhcc
Q 013417 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETW-EWVNL 276 (443)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETw-EWVdL 276 (443)
-||-||...=+..+ ||.|+|++-+...++-.|.||--+ .+| |||+.
T Consensus 14 ~vGmkLEa~d~~~p-~~~AtV~~v~~~~~~~~VhfdGw~--~~~D~W~~~ 60 (69)
T 3sd4_A 14 EVGAQLEARDRLKN-WYPAHIEDIDYEEGKVLIHFKRWN--HRYDEWFCW 60 (69)
T ss_dssp STTCEEEEECTTSC-EEEEEEEEEETTTTEEEEEETTSC--GGGCEEEET
T ss_pred CCCCEEEEEECCCC-ccccEEEEEeccCCEEEEEeCCCC--CCCCEEEcC
Confidence 46778877655544 699999997666688899998543 334 68863
No 49
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=41.08 E-value=17 Score=28.55 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=32.2
Q ss_pred chhHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 013417 352 TETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLED 396 (443)
Q Consensus 352 T~slikeVervf~~~~pDp~eiEkAKk~LkehEqaL~dAIArL~e 396 (443)
|..+||||-...++ =|+.+|+.|.|..-.|.+||.-|.+
T Consensus 9 t~~~Vk~LRe~TGa------g~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 9 SKELLMKLRRKTGY------SFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp CCHHHHHHHHHHCC------CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC------CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45789999887663 4789999999999999999998863
No 50
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=40.90 E-value=41 Score=28.95 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=25.9
Q ss_pred HHH--hhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 013417 360 EKV--FAANHPDPTDVEKAKRVLKEQELALVNAIAKLE 395 (443)
Q Consensus 360 erv--f~~~~pDp~eiEkAKk~LkehEqaL~dAIArL~ 395 (443)
+|| |.+...|+.+|-+.+.+|+|.+.-|-|.-.||.
T Consensus 36 ~kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~ 73 (116)
T 3mxz_A 36 AKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLE 73 (116)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455 556789999999999999888766555444443
No 51
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=39.60 E-value=23 Score=30.55 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 013417 370 PTDVEKAKRVLKEQELALVNAIAKLEDASD 399 (443)
Q Consensus 370 p~eiEkAKk~LkehEqaL~dAIArL~eaSD 399 (443)
|..||+--+-|+.||+.|+-|.-+|.+|-+
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~ 63 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEK 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667789999999999999997643
No 52
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=38.20 E-value=19 Score=30.53 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=28.6
Q ss_pred HHHH--hhcCCCChhhHHHHHHHHHHHHHH-------HHHHHHHhcccCC
Q 013417 359 VEKV--FAANHPDPTDVEKAKRVLKEQELA-------LVNAIAKLEDASD 399 (443)
Q Consensus 359 Verv--f~~~~pDp~eiEkAKk~LkehEqa-------L~dAIArL~eaSD 399 (443)
-+|| |.+.++|+..|-+...+|+|.+.- |..|++.|.+.-.
T Consensus 34 ~~riek~k~e~~Dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~ 83 (108)
T 1h7c_A 34 EEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILE 83 (108)
T ss_dssp HHHHHHHHHHHCSCTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3455 556688999999999999887654 5556666655443
No 53
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=38.20 E-value=23 Score=28.97 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 013417 370 PTDVEKAKRVLKEQELALVNAIAKLEDASD 399 (443)
Q Consensus 370 p~eiEkAKk~LkehEqaL~dAIArL~eaSD 399 (443)
|..|++--+-|+.||+.|+-|.-+|.+|-.
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkdA~~ 33 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAER 33 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788899999999999999997643
No 54
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=38.08 E-value=23 Score=30.55 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=34.0
Q ss_pred cCCccccceeecccCC---CCCceeEEEeecCCCC---C----ceeeeecCCCccccc-hhhc
Q 013417 224 TYNPLIGRKVWTRWPE---DNHFYEAVITDYNPNE---G----RHALVYDINTADETW-EWVN 275 (443)
Q Consensus 224 ~~~~LIGrkV~~~WPd---Dn~wyEavItdYn~~t---g----~H~LvYD~~t~~ETw-EWVd 275 (443)
.+.=-+|-+|-.++++ .+-||||.|.+-...+ | .+.|-|.- =+.+| |||-
T Consensus 17 ~~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~G--Wn~~wDEWV~ 77 (110)
T 3m9p_A 17 KFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNG--WNRSWDRWAA 77 (110)
T ss_dssp -CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETT--SCGGGCEEEE
T ss_pred CCcccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEECC--CCcchhhccC
Confidence 3344588899999885 2689999999876532 2 57888853 33456 4884
No 55
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=37.45 E-value=20 Score=30.30 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=33.5
Q ss_pred cccceeecccCCCCCceeEEEeecCCCCC--ceeeeecCCCccccchhhccc
Q 013417 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLK 277 (443)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~tg--~H~LvYD~~t~~ETwEWVdL~ 277 (443)
-||-+|..+| ++.||+|.|.+-....+ .+.|-|.--+.. --|||...
T Consensus 24 ~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR-~DEWV~~~ 72 (102)
T 2f5k_A 24 QEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSGWNKN-WDEWVPES 72 (102)
T ss_dssp CTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETTSCGG-GCEEEEGG
T ss_pred CCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCCC-ceeeccHh
Confidence 4788999999 78999999998765433 677778754432 12688643
No 56
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=36.63 E-value=26 Score=25.75 Aligned_cols=15 Identities=47% Similarity=0.895 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhCC
Q 013417 79 EKESLITELRKELRV 93 (443)
Q Consensus 79 eKE~LLTeLR~eL~I 93 (443)
|+|.+|.+||.||++
T Consensus 5 ere~~i~~LreeLR~ 19 (43)
T 2l2l_A 5 ERERMIKQLKEELRL 19 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999999984
No 57
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=34.46 E-value=32 Score=29.80 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=31.1
Q ss_pred cchhHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 013417 351 HTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLED 396 (443)
Q Consensus 351 ~T~slikeVervf~~~~pDp~eiEkAKk~LkehEqaL~dAIArL~e 396 (443)
..+-=|+|+.+++.....+...++..+.+|.+|.+.|...|++|..
T Consensus 71 ~~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~ 116 (148)
T 3gpv_A 71 NTGMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEK 116 (148)
T ss_dssp TTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444578888887732223345677788888888888887777654
No 58
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=34.00 E-value=34 Score=29.10 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=28.4
Q ss_pred chhHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 013417 352 TETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLED 396 (443)
Q Consensus 352 T~slikeVervf~~~~pDp~eiEkAKk~LkehEqaL~dAIArL~e 396 (443)
.+-=++|+..++..........+..+.+|.+|.+.|...|++|..
T Consensus 56 ~G~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~ 100 (135)
T 1q06_A 56 VGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQS 100 (135)
T ss_dssp TTCCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344478888887632211223466778888888887777776653
No 59
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=32.39 E-value=30 Score=29.34 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 013417 370 PTDVEKAKRVLKEQELALVNAIAKLEDAS 398 (443)
Q Consensus 370 p~eiEkAKk~LkehEqaL~dAIArL~eaS 398 (443)
|..|++--+-|+.||+.|+-|.-+|.+|-
T Consensus 4 M~~i~eLq~e~~~~E~QL~~A~QKLkdA~ 32 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAE 32 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777789999999999999999764
No 60
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=32.07 E-value=29 Score=28.63 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=34.8
Q ss_pred cCCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccch
Q 013417 224 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWE 272 (443)
Q Consensus 224 ~~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwE 272 (443)
-..+||||+|++.- .|+..|+|++..|||.+--=.|+-- ..+++|-
T Consensus 11 el~~li~KeV~V~l-~dg~~y~G~l~tvDp~s~sIvL~n~--~~~~~~~ 56 (86)
T 1y96_A 11 EWQDYIYKEVRVTA-SEKNEYKGWVLTTDPVSANIVLVNF--LEDGSMS 56 (86)
T ss_dssp HHHHTTTCEEEEEE-TTTEEEEEEEEEECTTTCCEEEEEE--CTTSCEE
T ss_pred HHHhhcCCEEEEEE-cCCCEEEEEEEEECCCceEEEEeec--ccCCeEE
Confidence 45789999999987 5688999999999998776556532 4455553
No 61
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=37.62 E-value=10 Score=30.96 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=31.9
Q ss_pred cccceeecccCCCCCceeEEEeecCCCC--CceeeeecCCCccccchhhcccc
Q 013417 228 LIGRKVWTRWPEDNHFYEAVITDYNPNE--GRHALVYDINTADETWEWVNLKE 278 (443)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~t--g~H~LvYD~~t~~ETwEWVdL~e 278 (443)
-||-+|..+|. +.||+|.|.+-.... ..+.|-|.--+.. --|||....
T Consensus 14 ~~Gekv~~~~~--~~~y~AkIl~i~~~~~~~~YyVHY~GwNkR-~DEWV~~~R 63 (85)
T 2lrq_A 14 VDGERVLCFHG--PLIYEAKVLKTKPDATPVEYYIHYAGWSKN-WDEWVPENR 63 (85)
Confidence 48999999994 489999999877543 3566666543322 126886443
No 62
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=30.82 E-value=30 Score=30.07 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=26.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 013417 366 NHPDPTDVEKAKRVLKEQELALVNAIAKLEDASD 399 (443)
Q Consensus 366 ~~pDp~eiEkAKk~LkehEqaL~dAIArL~eaSD 399 (443)
.-|..+.|++--+-|+.||+.|+-|.-+|.+|-.
T Consensus 17 ~~~~~~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~ 50 (113)
T 4fi5_A 17 QGPGSMTMEELQREINAHEGQLVIARQKVRDAEK 50 (113)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999999999997643
No 63
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=29.64 E-value=2.1e+02 Score=24.60 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHH
Q 013417 61 AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIRE 116 (443)
Q Consensus 61 AY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe 116 (443)
.....++.-+| -+.++-.-+.+|.++-..|+||..+-..++.++.......+.|-
T Consensus 97 ~l~~l~~vA~A-DG~~~~~E~~~L~~iA~~Lgls~~~~~~l~~~~~~~~~~~~~r~ 151 (161)
T 2ou3_A 97 ILLSAIWVSAA-DGELHEKEKAKIRKMATILGIKEEIVDQLEQLYYYEAALRQKRL 151 (161)
T ss_dssp HHHHHHHHHHT-TSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556 36799999999999999999999999999999987766665554
No 64
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=28.35 E-value=53 Score=27.23 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=32.3
Q ss_pred cCCccccceeecccCCCCCceeEEEeecCCCCCceeeee
Q 013417 224 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY 262 (443)
Q Consensus 224 ~~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY 262 (443)
+-+.|||..|-..==++-+-|+|+|++.|+.+..=.|+-
T Consensus 3 Ma~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~ 41 (84)
T 2vc8_A 3 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTR 41 (84)
T ss_dssp --CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEE
T ss_pred ccccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEeh
Confidence 447899999999999999999999999999876655553
No 65
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.28 E-value=41 Score=29.03 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=30.9
Q ss_pred cchhHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 013417 351 HTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLED 396 (443)
Q Consensus 351 ~T~slikeVervf~~~~pDp~eiEkAKk~LkehEqaL~dAIArL~e 396 (443)
..+-=++|+.+++....-....++..+.+|++|.+.|...|++|..
T Consensus 57 ~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~ 102 (142)
T 3gp4_A 57 RAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQE 102 (142)
T ss_dssp HTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567787776622112235677788999998888888887764
No 66
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Probab=27.78 E-value=1.3e+02 Score=27.15 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHH
Q 013417 57 VEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWR 118 (443)
Q Consensus 57 LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~r 118 (443)
...+.+.++.+|+..+... ....+.|.++-.+++++.++=..++..+.+++....|++-.
T Consensus 113 ~~~~~~~al~~A~~~~g~d--i~d~~~L~~~a~~~GLd~~~~~~~l~~~~s~~~~~~l~~~~ 172 (234)
T 3rpp_A 113 MLEKASRELWMRVWSRNED--ITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETT 172 (234)
T ss_dssp GHHHHHHHHHHHHHTSCCC--CSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3456778889999997544 45678899999999999988888888888888777887754
No 67
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=27.18 E-value=19 Score=30.34 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013417 373 VEKAKRVLKEQELALVNAIAKL 394 (443)
Q Consensus 373 iEkAKk~LkehEqaL~dAIArL 394 (443)
-++|++.|+++--.|++||-.|
T Consensus 80 ~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 80 REDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHh
Confidence 4799999999999999999887
No 68
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=26.88 E-value=44 Score=29.26 Aligned_cols=24 Identities=17% Similarity=0.509 Sum_probs=19.6
Q ss_pred CCCCceeEEEeecCCCCCceeeeecC
Q 013417 239 EDNHFYEAVITDYNPNEGRHALVYDI 264 (443)
Q Consensus 239 dDn~wyEavItdYn~~tg~H~LvYD~ 264 (443)
++..||+|+|+++ .+..-.+.|+.
T Consensus 13 ~~G~~y~a~V~~v--~~d~~~V~f~n 36 (128)
T 3h8z_A 13 SNGAFYKGFVKDV--HEDSVTIFFEN 36 (128)
T ss_dssp TTSCEEEEEEEEE--CSSEEEEEETT
T ss_pred CCCCEEEEEEEEE--eCCcEEEEEcc
Confidence 5689999999998 45678888963
No 69
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13
Probab=26.62 E-value=1.4e+02 Score=26.38 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHHh
Q 013417 60 DAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRK 119 (443)
Q Consensus 60 eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~r~ 119 (443)
+.+.++.+|+..+. ..+..+..|.++-.+++++.++=..++..+++++....|++..+
T Consensus 116 ~~~~alf~a~~~~~--~~i~~~~~L~~~a~~~Gl~~~d~~~~~~~~~s~~~~~~v~~~~~ 173 (226)
T 1r4w_A 116 KVSRELWMRIWSRD--EDITESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTG 173 (226)
T ss_dssp HHHHHHHHHHHTSC--CCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CCCCCHHHHHHHHHHcCCCchhHHHHHHHcCCHHHHHHHHHHHH
Confidence 44566777777754 34556677888999999998878888888888887777877543
No 70
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=26.49 E-value=83 Score=27.95 Aligned_cols=12 Identities=58% Similarity=1.024 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q 013417 316 VSGAGRGRGTMK 327 (443)
Q Consensus 316 ~~~~grgrg~~k 327 (443)
-++.|||||.+|
T Consensus 119 ~~~~~~~~~~~~ 130 (133)
T 1ub1_A 119 SPGSGRGRGRPK 130 (133)
T ss_dssp CCCCCCCCCCCC
T ss_pred CCCCCCCCCCCC
Confidence 456789999888
No 71
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=26.46 E-value=69 Score=29.54 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=33.5
Q ss_pred cccceeecccCCCCCceeEEEeecCCC-CCceeeeecCCCcc
Q 013417 228 LIGRKVWTRWPEDNHFYEAVITDYNPN-EGRHALVYDINTAD 268 (443)
Q Consensus 228 LIGrkV~~~WPdDn~wyEavItdYn~~-tg~H~LvYD~~t~~ 268 (443)
=.|.+|...||+--.||.|+|..=... ++.+.|.+|..+..
T Consensus 118 ~~G~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~L~FEdde~~ 159 (180)
T 3mea_A 118 QKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYA 159 (180)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEECCSSTTCCEEEEEBCTTST
T ss_pred CCCCEEEEeCCCCceeeEEEEecCCCCCCCcEEEEEcCCCcc
Confidence 368999999999999999999986443 37888888877643
No 72
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=26.25 E-value=82 Score=26.57 Aligned_cols=33 Identities=6% Similarity=0.133 Sum_probs=23.4
Q ss_pred chhHHHHHHHHhh---cCCCChhhHHHHHHHHHHHH
Q 013417 352 TETLIKEVEKVFA---ANHPDPTDVEKAKRVLKEQE 384 (443)
Q Consensus 352 T~slikeVervf~---~~~pDp~eiEkAKk~LkehE 384 (443)
.+.+++.|.+.+. ....+..|+++||+.|+..-
T Consensus 97 ~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~ 132 (197)
T 3ih6_A 97 QDKALQTLTATLESLSSKPFSQEELERARSKWLTAW 132 (197)
T ss_dssp HHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 4555555555543 45789999999999887654
No 73
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=25.54 E-value=66 Score=25.19 Aligned_cols=43 Identities=14% Similarity=0.346 Sum_probs=28.8
Q ss_pred hHHHHHHHHhhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 013417 354 TLIKEVEKVFAAN-HPDPTDVEKAKRVLKEQELALVNAIAKLED 396 (443)
Q Consensus 354 slikeVervf~~~-~pDp~eiEkAKk~LkehEqaL~dAIArL~e 396 (443)
-=++|+..++... .++...++..+.+|++|-+.|...|++|..
T Consensus 17 fsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~ 60 (99)
T 1q08_A 17 FSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQS 60 (99)
T ss_dssp CCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367777777632 233224667888888888888888777654
No 74
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans}
Probab=24.79 E-value=49 Score=32.59 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=23.7
Q ss_pred eecchhHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 013417 349 ILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQ 383 (443)
Q Consensus 349 i~~T~slikeVervf~~~~pDp~eiEkAKk~Lkeh 383 (443)
.+|-.. |.-|+++|+ |++.||++|+++|..-
T Consensus 253 ~IHP~Q-I~~in~~f~---Ps~~ei~~A~~il~a~ 283 (339)
T 3r4i_A 253 SIHPAQ-IEAIVAAFA---PRDEEITTATEILLAA 283 (339)
T ss_dssp ESSHHH-HHHHHHHTS---CCTHHHHHHHHHHHHH
T ss_pred eeCHHH-HHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 345433 455888887 9999999999999763
No 75
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=23.31 E-value=79 Score=24.71 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=26.0
Q ss_pred hHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 013417 354 TLIKEVEKVFAANHPDPTDVEKAKRVLKEQE 384 (443)
Q Consensus 354 slikeVervf~~~~pDp~eiEkAKk~LkehE 384 (443)
+-|.|+|..+....|-+.+++.++..|++|+
T Consensus 16 ~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~ 46 (118)
T 3uul_A 16 TWLLSAEDTFQEQDDISDDVEDVKEQFATHE 46 (118)
T ss_dssp HHHHHHHHHHHTSCCCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 4478999998877777889999999999885
No 76
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=21.67 E-value=37 Score=25.26 Aligned_cols=25 Identities=40% Similarity=0.655 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHH
Q 013417 80 KESLITELRKELRVSDEEHRELLSKVNADDIILRIRE 116 (443)
Q Consensus 80 KE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe 116 (443)
|++||.|+|+||. ++ .++.|.+||.
T Consensus 13 KqEIL~E~RkElq-----------K~-K~EIIeAi~~ 37 (45)
T 1use_A 13 KQELLEEVKKELQ-----------KV-KEEIIEAFVQ 37 (45)
T ss_dssp HHHHHHHHHHHHH-----------HH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------HH-HHHHHHHHHH
Confidence 7889999999873 33 5566777766
No 77
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=21.50 E-value=91 Score=26.92 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=26.8
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 013417 353 ETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLED 396 (443)
Q Consensus 353 ~slikeVervf~~~~pDp~eiEkAKk~LkehEqaL~dAIArL~e 396 (443)
+-=++|+.+++... + ..++.++.+|.+|.+.|.+.|++|..
T Consensus 61 G~sl~~I~~~l~~~--~-~~~~~~~~~L~~q~~~L~~~i~~l~~ 101 (146)
T 3hh0_A 61 GFSLGEIQNIILQR--D-IETEVFLRQMHFQREVLLAEQERIAK 101 (146)
T ss_dssp TCCHHHHHHHHTSS--E-EEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcc--C-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33478888898743 2 24566777777777777666666543
No 78
>2q22_A Uncharacterized protein; YP_323524.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PG4; 2.11A {Anabaena variabilis atcc 29413} SCOP: d.365.1.1
Probab=21.47 E-value=57 Score=29.08 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=25.5
Q ss_pred CCChhhHHHHHHHHH-------------HHHHHHHHHHHHhcccCC
Q 013417 367 HPDPTDVEKAKRVLK-------------EQELALVNAIAKLEDASD 399 (443)
Q Consensus 367 ~pDp~eiEkAKk~Lk-------------ehEqaL~dAIArL~eaSD 399 (443)
|+-.++||.|+++|+ ++.+.|+.||..+...+|
T Consensus 6 ~~~~~~i~~a~~~L~d~~~l~~ap~ls~~~r~~Lr~aL~~~~~~sd 51 (139)
T 2q22_A 6 NHPNLTTADAKKILNKFNCLDIAPILKPSEKESVRRALILITKLSD 51 (139)
T ss_dssp ---CCCHHHHHHHHHTTTTCSBCCCCCHHHHHHHHHHHHHHHHTSS
T ss_pred CCCCccHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHHHhhCC
Confidence 455578888988887 478999999999998776
No 79
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=20.21 E-value=1.8e+02 Score=24.25 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=35.6
Q ss_pred cCCccccceeecccCCCCCceeEEEeecCCCC-----CceeeeecCCCccccchhhccccC
Q 013417 224 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNE-----GRHALVYDINTADETWEWVNLKEI 279 (443)
Q Consensus 224 ~~~~LIGrkV~~~WPdDn~wyEavItdYn~~t-----g~H~LvYD~~t~~ETwEWVdL~ei 279 (443)
.+++-=|.+|..+|+ ++.||+|.|.+-.... -++-+-|.--+.. --|||....|
T Consensus 12 ~i~~~~~e~vlc~~~-dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkR-lDEWV~~~RL 70 (92)
T 2bud_A 12 DISENPDKIYFIRRE-DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRR-LDGWVGRHRI 70 (92)
T ss_dssp CSTTCTTSCEEEECT-TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTT-TCEEEETTTE
T ss_pred EecCCCCCEEEEEeC-CCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccc-cccccCHHHh
Confidence 333334779999996 7899999998855433 3566667654432 2468876554
Done!