Query 013422
Match_columns 443
No_of_seqs 342 out of 1714
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:41:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05320 rhodanese superfamily 99.9 1.2E-22 2.6E-27 199.0 8.3 203 47-268 23-233 (257)
2 PRK01415 hypothetical protein; 99.9 8.5E-23 1.8E-27 199.4 3.8 201 48-268 26-231 (247)
3 cd01518 RHOD_YceA Member of th 99.8 6.7E-20 1.5E-24 152.8 8.7 100 137-249 2-101 (101)
4 PLN02160 thiosulfate sulfurtra 99.8 4.6E-19 1E-23 158.0 11.1 113 131-257 9-129 (136)
5 COG1054 Predicted sulfurtransf 99.8 3E-20 6.4E-25 184.5 0.8 256 46-335 24-294 (308)
6 cd01533 4RHOD_Repeat_2 Member 99.8 7.6E-19 1.7E-23 148.6 9.2 100 136-251 9-109 (109)
7 PRK00162 glpE thiosulfate sulf 99.8 1.6E-18 3.5E-23 146.4 9.4 104 136-258 4-107 (108)
8 PRK00142 putative rhodanese-re 99.8 1.7E-18 3.6E-23 174.3 10.1 202 51-273 28-236 (314)
9 KOG1530 Rhodanese-related sulf 99.8 3.3E-18 7.2E-23 152.4 9.9 109 135-255 21-135 (136)
10 cd01522 RHOD_1 Member of the R 99.8 5.2E-18 1.1E-22 146.5 10.4 108 139-255 1-116 (117)
11 cd01523 RHOD_Lact_B Member of 99.8 4.6E-18 1E-22 141.3 9.7 96 139-248 1-99 (100)
12 cd01527 RHOD_YgaP Member of th 99.7 9E-18 2E-22 139.1 9.1 98 137-254 2-99 (99)
13 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 3E-17 6.5E-22 150.6 11.6 110 135-254 34-162 (162)
14 cd01534 4RHOD_Repeat_3 Member 99.7 4E-17 8.6E-22 135.0 9.6 94 139-249 1-95 (95)
15 COG0607 PspE Rhodanese-related 99.7 3.6E-17 7.9E-22 136.0 9.2 101 140-257 8-109 (110)
16 cd01526 RHOD_ThiF Member of th 99.7 6.9E-17 1.5E-21 139.9 9.0 107 136-254 7-118 (122)
17 cd01528 RHOD_2 Member of the R 99.7 9.4E-17 2E-21 133.9 8.9 96 139-249 2-98 (101)
18 cd01444 GlpE_ST GlpE sulfurtra 99.7 9.9E-17 2.2E-21 131.2 8.5 94 139-249 2-96 (96)
19 cd01519 RHOD_HSP67B2 Member of 99.7 1.8E-16 4E-21 132.0 9.8 99 140-249 2-106 (106)
20 cd01525 RHOD_Kc Member of the 99.7 1E-16 2.3E-21 133.6 7.7 100 139-248 1-104 (105)
21 cd01447 Polysulfide_ST Polysul 99.7 1.5E-16 3.3E-21 131.4 7.8 101 139-251 1-103 (103)
22 cd01530 Cdc25 Cdc25 phosphatas 99.7 1.9E-16 4.2E-21 138.1 8.8 98 137-248 2-120 (121)
23 cd01521 RHOD_PspE2 Member of t 99.7 3E-16 6.5E-21 133.4 9.1 102 135-254 6-110 (110)
24 cd01448 TST_Repeat_1 Thiosulfa 99.6 8.6E-16 1.9E-20 131.8 10.7 101 139-251 2-122 (122)
25 smart00450 RHOD Rhodanese Homo 99.6 9.5E-16 2.1E-20 122.9 9.5 93 151-253 2-100 (100)
26 cd01520 RHOD_YbbB Member of th 99.6 1.2E-15 2.7E-20 133.5 10.2 98 139-249 1-126 (128)
27 cd01449 TST_Repeat_2 Thiosulfa 99.6 7.4E-16 1.6E-20 130.9 7.8 101 139-249 1-118 (118)
28 cd01531 Acr2p Eukaryotic arsen 99.6 1.2E-15 2.6E-20 130.1 8.6 101 137-250 2-112 (113)
29 PF00581 Rhodanese: Rhodanese- 99.6 2.9E-15 6.3E-20 124.1 9.2 100 140-250 1-113 (113)
30 cd01535 4RHOD_Repeat_4 Member 99.6 3.5E-15 7.5E-20 134.6 10.3 100 144-261 2-101 (145)
31 cd01532 4RHOD_Repeat_1 Member 99.6 3.8E-15 8.2E-20 123.1 8.7 86 147-249 5-92 (92)
32 cd01524 RHOD_Pyr_redox Member 99.6 6E-15 1.3E-19 120.8 9.7 89 139-248 1-89 (90)
33 cd01529 4RHOD_Repeats Member o 99.6 3.9E-15 8.4E-20 123.1 8.3 86 151-249 10-96 (96)
34 PRK08762 molybdopterin biosynt 99.6 6.2E-15 1.3E-19 151.0 11.3 106 136-259 2-107 (376)
35 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 5E-15 1.1E-19 126.5 8.4 99 137-248 2-112 (113)
36 cd00158 RHOD Rhodanese Homolog 99.5 1.1E-14 2.3E-19 115.8 6.8 88 144-248 2-89 (89)
37 PRK07878 molybdopterin biosynt 99.5 4.8E-14 1E-18 145.6 10.6 103 136-254 286-388 (392)
38 TIGR02981 phageshock_pspE phag 99.5 5.6E-14 1.2E-18 119.9 8.2 81 152-249 17-97 (101)
39 PRK07411 hypothetical protein; 99.5 1.5E-13 3.3E-18 141.9 10.0 106 136-255 281-387 (390)
40 PRK10287 thiosulfate:cyanide s 99.5 2.9E-13 6.2E-18 116.3 9.0 82 151-249 18-99 (104)
41 PRK11493 sseA 3-mercaptopyruva 99.4 5.9E-13 1.3E-17 131.2 11.0 109 138-257 6-136 (281)
42 PRK05600 thiamine biosynthesis 99.4 2.6E-13 5.6E-18 139.6 8.2 95 138-241 272-368 (370)
43 PRK11493 sseA 3-mercaptopyruva 99.4 4.8E-13 1E-17 131.8 8.6 109 139-257 155-280 (281)
44 PRK09629 bifunctional thiosulf 99.4 9E-13 2E-17 143.4 11.4 108 138-257 10-130 (610)
45 PLN02723 3-mercaptopyruvate su 99.4 3.7E-12 8.1E-17 128.2 11.1 109 137-257 22-152 (320)
46 TIGR03167 tRNA_sel_U_synt tRNA 99.3 1.6E-12 3.5E-17 131.2 8.1 91 153-256 2-121 (311)
47 PLN02723 3-mercaptopyruvate su 99.3 3.5E-12 7.6E-17 128.4 8.9 109 139-257 192-318 (320)
48 PRK05597 molybdopterin biosynt 99.3 2.3E-12 5E-17 131.7 7.5 94 138-250 262-355 (355)
49 PRK11784 tRNA 2-selenouridine 99.3 4E-12 8.7E-17 129.9 8.8 104 140-256 4-135 (345)
50 cd01446 DSP_MapKP N-terminal r 99.3 8.2E-12 1.8E-16 109.2 9.6 101 139-249 2-126 (132)
51 PRK09629 bifunctional thiosulf 99.3 1.7E-11 3.7E-16 133.5 10.6 114 138-261 148-276 (610)
52 cd01445 TST_Repeats Thiosulfat 99.2 4.7E-11 1E-15 106.8 9.8 100 139-248 1-137 (138)
53 PRK01269 tRNA s(4)U8 sulfurtra 99.0 1.2E-09 2.6E-14 115.9 9.3 81 142-239 398-482 (482)
54 COG2897 SseA Rhodanese-related 98.9 4.5E-09 9.7E-14 105.3 9.2 109 139-257 158-283 (285)
55 KOG2017 Molybdopterin synthase 98.7 7.4E-09 1.6E-13 105.7 4.6 103 136-250 316-419 (427)
56 COG2897 SseA Rhodanese-related 98.6 2.4E-07 5.2E-12 93.0 10.3 109 137-256 11-138 (285)
57 PLN03209 translocon at the inn 98.3 4.7E-07 1E-11 98.4 5.4 40 404-443 352-391 (576)
58 PLN03209 translocon at the inn 98.3 9E-07 1.9E-11 96.3 6.9 28 416-443 431-458 (576)
59 KOG3772 M-phase inducer phosph 97.9 1.1E-05 2.4E-10 82.1 5.6 105 134-250 153-276 (325)
60 KOG1529 Mercaptopyruvate sulfu 97.6 0.00038 8.2E-09 70.1 10.1 109 138-258 6-138 (286)
61 KOG1529 Mercaptopyruvate sulfu 96.6 0.0048 1E-07 62.3 6.5 89 151-249 170-275 (286)
62 TIGR01244 conserved hypothetic 95.8 0.047 1E-06 48.8 8.1 87 136-226 12-106 (135)
63 PF04273 DUF442: Putative phos 95.4 0.053 1.2E-06 47.5 7.0 85 136-224 12-104 (110)
64 COG5105 MIH1 Mitotic inducer, 95.2 0.018 3.9E-07 59.3 3.9 102 134-250 239-358 (427)
65 PF14159 CAAD: CAAD domains of 94.6 0.096 2.1E-06 44.6 6.1 39 303-341 48-86 (90)
66 PLN02777 photosystem I P subun 90.3 0.39 8.4E-06 45.3 4.4 39 304-342 124-162 (167)
67 COG2603 Predicted ATPase [Gene 87.7 0.7 1.5E-05 47.5 4.4 82 152-241 14-123 (334)
68 cd00127 DSPc Dual specificity 87.5 1.8 3.9E-05 37.3 6.4 72 151-231 26-109 (139)
69 smart00195 DSPc Dual specifici 86.6 3 6.5E-05 36.3 7.3 74 151-231 25-106 (138)
70 PF13350 Y_phosphatase3: Tyros 81.2 6.5 0.00014 35.8 7.4 94 135-232 26-152 (164)
71 PLN02727 NAD kinase 78.1 7 0.00015 45.8 7.9 89 136-227 266-364 (986)
72 COG3453 Uncharacterized protei 63.4 16 0.00035 33.3 5.3 79 136-222 13-103 (130)
73 PF09992 DUF2233: Predicted pe 61.6 9.2 0.0002 34.8 3.5 39 204-242 98-141 (170)
74 KOG1093 Predicted protein kina 60.5 3 6.4E-05 46.5 0.1 92 137-241 622-715 (725)
75 TIGR02689 ars_reduc_gluta arse 56.7 29 0.00063 30.4 5.7 49 207-255 1-57 (126)
76 PF01451 LMWPc: Low molecular 56.7 11 0.00024 33.0 3.1 34 209-242 1-39 (138)
77 PTZ00242 protein tyrosine phos 55.9 67 0.0015 29.8 8.3 27 204-230 96-124 (166)
78 PF05706 CDKN3: Cyclin-depende 54.1 31 0.00067 32.9 5.7 78 151-230 70-159 (168)
79 TIGR00853 pts-lac PTS system, 53.2 16 0.00036 31.0 3.5 35 206-241 3-41 (95)
80 PF00782 DSPc: Dual specificit 53.2 15 0.00033 31.5 3.4 71 154-231 20-101 (133)
81 PF07462 MSP1_C: Merozoite sur 52.9 25 0.00055 39.0 5.6 17 358-374 255-271 (574)
82 PF03853 YjeF_N: YjeF-related 51.2 34 0.00074 31.6 5.5 54 203-257 22-87 (169)
83 PF03162 Y_phosphatase2: Tyros 49.5 23 0.0005 33.0 4.1 27 203-229 88-115 (164)
84 PTZ00393 protein tyrosine phos 48.2 32 0.0007 34.5 5.1 71 152-232 116-198 (241)
85 COG2453 CDC14 Predicted protei 46.7 32 0.0007 32.1 4.7 29 204-232 103-134 (180)
86 PRK09590 celB cellobiose phosp 44.0 25 0.00055 30.5 3.3 34 207-241 2-39 (104)
87 cd05565 PTS_IIB_lactose PTS_II 43.4 23 0.00049 30.7 2.8 33 208-241 2-38 (99)
88 PRK00142 putative rhodanese-re 42.0 4 8.7E-05 41.8 -2.4 84 138-235 15-105 (314)
89 PF02302 PTS_IIB: PTS system, 41.3 33 0.00072 27.6 3.4 25 208-232 1-30 (90)
90 PRK10499 PTS system N,N'-diace 41.2 31 0.00067 29.9 3.4 21 207-227 4-24 (106)
91 smart00226 LMWPc Low molecular 40.4 40 0.00088 29.6 4.1 33 209-241 1-34 (140)
92 KOG0333 U5 snRNP-like RNA heli 39.8 41 0.00088 37.7 4.6 47 194-241 505-551 (673)
93 cd05564 PTS_IIB_chitobiose_lic 39.3 30 0.00065 29.2 2.9 33 208-241 1-37 (96)
94 cd00133 PTS_IIB PTS_IIB: subun 39.2 29 0.00064 26.6 2.7 25 208-232 1-30 (84)
95 cd00927 Cyt_c_Oxidase_VIc Cyto 39.1 1.3E+02 0.0028 24.9 6.4 40 314-357 26-65 (70)
96 PRK10126 tyrosine phosphatase; 35.7 52 0.0011 29.7 4.1 34 207-241 3-37 (147)
97 PRK12361 hypothetical protein; 35.7 94 0.002 34.0 6.7 85 139-228 108-199 (547)
98 PF13344 Hydrolase_6: Haloacid 35.2 58 0.0012 27.6 4.0 37 191-232 20-57 (101)
99 PHA01399 membrane protein P6 35.0 53 0.0011 32.2 4.1 41 74-120 143-183 (242)
100 PRK10310 PTS system galactitol 34.8 49 0.0011 27.9 3.6 33 208-241 4-41 (94)
101 PRK00575 tatA twin arginine tr 34.5 1.2E+02 0.0027 26.3 5.9 49 309-363 11-60 (92)
102 PF04722 Ssu72: Ssu72-like pro 34.1 54 0.0012 32.0 4.1 29 208-237 3-32 (195)
103 COG0529 CysC Adenylylsulfate k 34.0 35 0.00076 33.2 2.8 95 205-340 22-123 (197)
104 PF02590 SPOUT_MTase: Predicte 32.9 61 0.0013 30.1 4.1 42 203-244 64-110 (155)
105 COG4822 CbiK Cobalamin biosynt 32.4 87 0.0019 31.5 5.2 98 136-237 57-173 (265)
106 cd00115 LMWPc Substituted upda 32.3 54 0.0012 28.9 3.6 34 208-241 2-37 (141)
107 KOG1717 Dual specificity phosp 31.8 58 0.0013 33.6 4.0 24 138-162 5-28 (343)
108 PF02937 COX6C: Cytochrome c o 31.5 2E+02 0.0043 23.8 6.4 32 322-357 36-67 (73)
109 PRK13530 arsenate reductase; P 31.1 86 0.0019 28.0 4.6 49 207-255 4-60 (133)
110 TIGR03167 tRNA_sel_U_synt tRNA 31.1 1.3E+02 0.0028 31.0 6.5 71 137-220 136-210 (311)
111 PF07462 MSP1_C: Merozoite sur 31.0 1.1E+02 0.0023 34.3 6.1 11 330-340 248-258 (574)
112 PRK11391 etp phosphotyrosine-p 30.8 85 0.0018 28.4 4.6 34 207-241 3-37 (144)
113 PLN03050 pyridoxine (pyridoxam 30.2 68 0.0015 31.9 4.2 27 206-232 60-89 (246)
114 PLN02918 pyridoxine (pyridoxam 29.7 94 0.002 34.7 5.6 48 206-254 135-192 (544)
115 PF14606 Lipase_GDSL_3: GDSL-l 28.8 87 0.0019 30.0 4.5 80 136-239 44-144 (178)
116 PF00156 Pribosyltran: Phospho 28.6 1E+02 0.0022 25.9 4.5 33 204-236 86-121 (125)
117 cd00079 HELICc Helicase superf 28.4 96 0.0021 25.5 4.3 36 205-241 27-62 (131)
118 COG0062 Uncharacterized conser 28.2 1.3E+02 0.0028 29.5 5.6 35 206-240 49-86 (203)
119 KOG1924 RhoA GTPase effector D 27.4 4E+02 0.0086 31.6 9.8 42 74-119 141-182 (1102)
120 PF01488 Shikimate_DH: Shikima 26.8 1.1E+02 0.0023 27.1 4.5 34 204-238 10-43 (135)
121 PF04122 CW_binding_2: Putativ 26.5 74 0.0016 26.1 3.2 34 205-241 49-82 (92)
122 cd05566 PTS_IIB_galactitol PTS 24.7 77 0.0017 25.6 3.0 25 208-232 2-31 (89)
123 KOG0559 Dihydrolipoamide succi 24.6 1.9E+02 0.0041 31.1 6.4 10 401-410 182-191 (457)
124 COG2518 Pcm Protein-L-isoaspar 24.4 80 0.0017 31.1 3.4 40 208-250 96-136 (209)
125 PRK04837 ATP-dependent RNA hel 24.4 1.4E+02 0.0031 31.1 5.5 38 204-242 253-290 (423)
126 cd05567 PTS_IIB_mannitol PTS_I 24.3 85 0.0018 25.7 3.2 26 207-232 1-31 (87)
127 PF09796 QCR10: Ubiquinol-cyto 24.3 90 0.002 25.3 3.1 47 284-348 15-61 (64)
128 PF13748 ABC_membrane_3: ABC t 24.2 1.1E+02 0.0023 30.8 4.3 57 49-117 64-124 (237)
129 PF08997 UCR_6-4kD: Ubiquinol- 23.9 58 0.0013 25.8 1.9 31 280-310 15-45 (56)
130 TIGR00640 acid_CoA_mut_C methy 23.7 1.5E+02 0.0033 26.6 4.9 48 206-253 53-107 (132)
131 smart00012 PTPc_DSPc Protein t 23.7 1.2E+02 0.0025 24.2 3.8 17 206-222 39-56 (105)
132 smart00404 PTPc_motif Protein 23.7 1.2E+02 0.0025 24.2 3.8 17 206-222 39-56 (105)
133 PF11127 DUF2892: Protein of u 23.5 69 0.0015 25.0 2.3 48 266-320 9-59 (66)
134 COG1440 CelA Phosphotransferas 23.4 81 0.0018 27.8 2.9 23 207-229 2-24 (102)
135 PRK04537 ATP-dependent RNA hel 23.0 1.3E+02 0.0027 33.4 5.1 38 203-241 254-291 (572)
136 PLN03049 pyridoxine (pyridoxam 22.7 1.5E+02 0.0033 32.3 5.4 27 206-232 59-88 (462)
137 cd05563 PTS_IIB_ascorbate PTS_ 22.6 83 0.0018 25.3 2.8 27 208-234 1-32 (86)
138 PRK07688 thiamine/molybdopteri 22.6 79 0.0017 32.8 3.2 36 136-172 276-316 (339)
139 PF13399 LytR_C: LytR cell env 22.6 1.4E+02 0.003 24.3 4.1 30 205-234 2-33 (90)
140 TIGR02691 arsC_pI258_fam arsen 22.4 1.2E+02 0.0025 27.0 3.8 47 209-255 1-55 (129)
141 PF02863 Arg_repressor_C: Argi 21.9 1.2E+02 0.0026 24.3 3.5 26 204-229 45-70 (70)
142 PF10777 YlaC: Inner membrane 21.8 37 0.00079 32.0 0.5 65 103-174 29-97 (155)
143 COG0394 Wzb Protein-tyrosine-p 21.8 1.2E+02 0.0026 27.6 3.8 35 207-241 3-38 (139)
144 PHA01794 hypothetical protein 21.6 2.4E+02 0.0052 26.0 5.6 57 294-355 22-82 (134)
145 PRK00103 rRNA large subunit me 21.6 1.5E+02 0.0033 27.6 4.6 40 204-243 65-109 (157)
146 PRK14950 DNA polymerase III su 21.5 7.3E+02 0.016 27.6 10.6 18 48-65 27-44 (585)
147 PRK11192 ATP-dependent RNA hel 21.5 2E+02 0.0043 30.1 5.9 37 204-241 243-279 (434)
148 PRK11776 ATP-dependent RNA hel 21.0 1.6E+02 0.0035 31.1 5.2 38 204-242 240-277 (460)
149 TIGR03158 cas3_cyano CRISPR-as 20.4 2E+02 0.0044 29.7 5.7 38 204-241 270-308 (357)
150 KOG1368 Threonine aldolase [Am 20.3 6E+02 0.013 27.1 8.8 199 151-365 95-339 (384)
151 TIGR00201 comF comF family pro 20.3 1.5E+02 0.0032 27.8 4.3 33 205-237 151-186 (190)
No 1
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.87 E-value=1.2e-22 Score=199.03 Aligned_cols=203 Identities=14% Similarity=0.040 Sum_probs=138.8
Q ss_pred hhHHHHHhhhhccceeeeehhhhhhhhhhhhHHHHHhhhhcCCCCCCchhHHHHHHHHhhhhCHHHHHHHHHH--HH-HH
Q 013422 47 QNFLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTI--LA-VP 123 (443)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~m~~i~~F~~~npilva~~v~~--~v-L~ 123 (443)
..+.-|-...+.|||||+.||||++++-+...++++...+.. ++.++.+..++ ++...+|+--.-.-.- ++ +.
T Consensus 23 ~~~~~~~~~~~~G~i~ia~eGiN~t~~g~~~~id~~~~~l~~---~~~~~dl~~k~-~~~~~~pF~~l~vk~k~eiv~~g 98 (257)
T PRK05320 23 LVLARCEALGLKGTILLAPEGINLFLAGTREAIDAFYAWLRA---DARFADLQVKE-SLSDSQPFRRMLVKLKREIITMK 98 (257)
T ss_pred HHHHHHHHCCCeEEEEEcCCCceEEEEeeHHHHHHHHHHHhh---CCCccCceeec-ccccCCCchhccchhhhHHhhcC
Confidence 335567788999999999999999999999999999888776 33344433222 3344555432111111 10 00
Q ss_pred HHHHHhhcCCCCCcccCHHHHHHHhcCC-----CCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHh
Q 013422 124 LVLSQVLNKPKSWGVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLS 198 (443)
Q Consensus 124 ~~l~~~~~k~~~~g~ISa~eA~~LLn~~-----~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~ 198 (443)
+.......+ ....|+++++.+++++. ++.++||||++.||+. ||++ |++|||++++ ..+.+.+.
T Consensus 99 ~~~~n~~~~--~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~-Ghi~------GAiniPl~~f--~~~~~~l~ 167 (257)
T PRK05320 99 RPAIRPELG--RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDV-GTFD------GALDYRIDKF--TEFPEALA 167 (257)
T ss_pred CcccCcccC--cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHcc-CccC------CCEeCChhHh--hhhHHHHH
Confidence 000001111 24569999999998642 3589999999999997 7775 9999998542 12222232
Q ss_pred hhcCCCCCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCCCCCcccccchh
Q 013422 199 LKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNL 268 (443)
Q Consensus 199 ~~lk~~Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~~k~~sldl~rq 268 (443)
......++++||+||++|.||.+|++.|++.||++||+|+||| .+|.+.--.-...++.|.|| +|.
T Consensus 168 ~~~~~~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi---~~w~~~~~~~~~~G~~fVFD-~R~ 233 (257)
T PRK05320 168 AHRADLAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGI---LKYFEEVGGAHYDGDCFVFD-YRT 233 (257)
T ss_pred hhhhhcCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCH---HHHHHhCCCCeeeeeeeeec-Cee
Confidence 2111237899999999999999999999999999999999999 99987532212346779999 554
No 2
>PRK01415 hypothetical protein; Validated
Probab=99.86 E-value=8.5e-23 Score=199.44 Aligned_cols=201 Identities=11% Similarity=0.074 Sum_probs=136.4
Q ss_pred hHHHHHhhhhccceeeeehhhhhhhhhhhhHHHHHhhhhcCCCCCCchhHHHHHHHHhhhhCHHHHHHHHHH-HHHHHHH
Q 013422 48 NFLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTI-LAVPLVL 126 (443)
Q Consensus 48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~m~~i~~F~~~npilva~~v~~-~vL~~~l 126 (443)
.+.-|-...+.|||||+.||||++++-+..-++++...+.+ ++.+..+--.+ .....+|+-=+-.-.- =++.+-+
T Consensus 26 l~~~~~~~~~~G~i~la~EGIN~tisg~~~~~~~~~~~l~~---~~~~~~~~~k~-s~~~~~~F~~l~vr~k~eiV~~g~ 101 (247)
T PRK01415 26 LLLIGKRKYVRGTILLANEGFNGSFSGSYENVNLVLEELIK---LTGPKDVNVKI-NYSDVHPFQKLKVRLKKEIVAMNV 101 (247)
T ss_pred HHHHHHHcCCeeEEEEccCccceEeeCCHHHHHHHHHHHHh---CcCCCCceeec-ccccCCCCCccEEEeeceEEecCC
Confidence 35567788999999999999999999998888888777766 22333322121 2233344321000000 0000000
Q ss_pred HHhhc-CCCCCcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCC-CchhHHHHhhhcCCC
Q 013422 127 SQVLN-KPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDD-KPGFLKKLSLKFKEP 204 (443)
Q Consensus 127 ~~~~~-k~~~~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~-~~~fl~eL~~~lk~~ 204 (443)
+... .......|+++++.++++ ++++++||||++.||+. ||++ ||+|+|+.... .+.+.+.. ...+
T Consensus 102 -~~~~~~~~~g~~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~-Ghi~------gAinip~~~f~e~~~~~~~~---~~~~ 169 (247)
T PRK01415 102 -DDLNVDLFKGEYIEPKDWDEFIT-KQDVIVIDTRNDYEVEV-GTFK------SAINPNTKTFKQFPAWVQQN---QELL 169 (247)
T ss_pred -CCCCccccCccccCHHHHHHHHh-CCCcEEEECCCHHHHhc-CCcC------CCCCCChHHHhhhHHHHhhh---hhhc
Confidence 0000 001245699999999997 78899999999999997 7775 99999975311 11112111 1247
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCc--cCCCCCcccccchh
Q 013422 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW--IPPKKALGLDLSNL 268 (443)
Q Consensus 205 Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPv--v~~~k~~sldl~rq 268 (443)
++++|++||++|.||.+|+..|+++||++||+|+||| .+|.+..-+- .-.++-|+|| +|.
T Consensus 170 k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi---~~w~~~~~~~~~~w~G~~fVFD-~R~ 231 (247)
T PRK01415 170 KGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGI---LQYLEDTQNKNNLWQGECFVFD-DRR 231 (247)
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHH---HHHHHhcccCCCeeeeeeeeeC-cee
Confidence 8999999999999999999999999999999999999 9999865432 2345779999 554
No 3
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.81 E-value=6.7e-20 Score=152.85 Aligned_cols=100 Identities=20% Similarity=0.191 Sum_probs=82.1
Q ss_pred cccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCCC
Q 013422 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFD 216 (443)
Q Consensus 137 g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG 216 (443)
..|+++++.++++ +++.++||||++.||+. ||++ |++|||+.+. ..+.+.+....+.+++++|||||++|
T Consensus 2 ~~is~~~l~~~~~-~~~~~iiDvR~~~e~~~-ghi~------gA~~ip~~~~--~~~~~~~~~~~~~~~~~~ivvyC~~G 71 (101)
T cd01518 2 TYLSPAEWNELLE-DPEVVLLDVRNDYEYDI-GHFK------GAVNPDVDTF--REFPFWLDENLDLLKGKKVLMYCTGG 71 (101)
T ss_pred CcCCHHHHHHHHc-CCCEEEEEcCChhhhhc-CEec------cccCCCcccH--hHhHHHHHhhhhhcCCCEEEEECCCc
Confidence 3589999999996 67899999999999997 6765 9999998652 12222332212237889999999999
Q ss_pred hhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013422 217 GNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (443)
Q Consensus 217 ~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~ 249 (443)
.||..++..|..+||++||+|.||+ .+|.+
T Consensus 72 ~rs~~a~~~L~~~G~~~v~~l~GG~---~~W~~ 101 (101)
T cd01518 72 IRCEKASAYLKERGFKNVYQLKGGI---LKYLE 101 (101)
T ss_pred hhHHHHHHHHHHhCCcceeeechhH---HHHhC
Confidence 9999999999999999999999999 99974
No 4
>PLN02160 thiosulfate sulfurtransferase
Probab=99.79 E-value=4.6e-19 Score=157.99 Aligned_cols=113 Identities=20% Similarity=0.255 Sum_probs=90.6
Q ss_pred cCCCCCcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCc--EEeccCC------CCCchhHHHHhhhcC
Q 013422 131 NKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP--VSIVYKG------DDKPGFLKKLSLKFK 202 (443)
Q Consensus 131 ~k~~~~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgA--inIPl~~------~~~~~fl~eL~~~lk 202 (443)
.+......++++++.++++ + +.+|||||++.||.. ||++ |+ +|||+.. ...+.++.++...
T Consensus 9 ~~~~~~~~i~~~e~~~~~~-~-~~~lIDVR~~~E~~~-ghIp------gA~~iniP~~~~~~~~~l~~~~~~~~~~~~-- 77 (136)
T PLN02160 9 TKAEEVVSVDVSQAKTLLQ-S-GHQYLDVRTQDEFRR-GHCE------AAKIVNIPYMLNTPQGRVKNQEFLEQVSSL-- 77 (136)
T ss_pred cCceeeeEeCHHHHHHHHh-C-CCEEEECCCHHHHhc-CCCC------CcceecccchhcCcccccCCHHHHHHHHhc--
Confidence 3433467899999999986 3 468999999999997 7775 88 8999732 1122333334321
Q ss_pred CCCCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCC
Q 013422 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (443)
Q Consensus 203 ~~Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~ 257 (443)
.+++++||+||++|.||..+++.|.++||++||++.||+ .+|.++|+|+.+.
T Consensus 78 ~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~---~~W~~~g~p~~~~ 129 (136)
T PLN02160 78 LNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGY---LAWVDHSFPINQE 129 (136)
T ss_pred cCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcH---HHHhhCCCCcccc
Confidence 367889999999999999999999999999999999999 9999999999874
No 5
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.78 E-value=3e-20 Score=184.49 Aligned_cols=256 Identities=15% Similarity=0.102 Sum_probs=173.3
Q ss_pred hhhHHHHHhhhhccceeeeehhhhhhhhhhhhHHHHHhhhhcCCCCCCchhHHHHHHHHhhhhCHHHHHHHHHHHHHHHH
Q 013422 46 QQNFLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTILAVPLV 125 (443)
Q Consensus 46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~m~~i~~F~~~npilva~~v~~~vL~~~ 125 (443)
.+.++-|-+..+.||||||.||||+++|.+...+|++...+.+ ++.+++|.-++ .....+|+.-. -..
T Consensus 24 ~~l~~~~~~~~vkGrillA~EGINgtvsG~~e~~~~~~~~l~a---~~~f~~l~~K~-s~~~~~pF~r~--------kVk 91 (308)
T COG1054 24 DPLLALCKALGVKGRILLAHEGINGTVSGSAEAIEAYMAWLRA---DPGFADLRFKI-SEADEKPFWRL--------KVK 91 (308)
T ss_pred HHHHHHHHHcCceeEEEEccCCcceeEecCHHHHHHHHHHHHh---Ccccccceeee-ccccCCCcceE--------EEe
Confidence 3447778899999999999999999999999999999999998 55666665444 23444544311 111
Q ss_pred HHHh---------hcCCCC-CcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHH
Q 013422 126 LSQV---------LNKPKS-WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLK 195 (443)
Q Consensus 126 l~~~---------~~k~~~-~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~ 195 (443)
+.+. +..... ..-|+|+|..+++. +++.++||+|+..||+- ||.. ||++.+...+ .+|.+
T Consensus 92 ~kkEIV~lg~~ddv~p~~~vG~yl~p~~wn~~l~-D~~~vviDtRN~YE~~i-G~F~------gAv~p~~~tF--refP~ 161 (308)
T COG1054 92 LKKEIVALGVEDDVDPLENVGTYLSPKDWNELLS-DPDVVVIDTRNDYEVAI-GHFE------GAVEPDIETF--REFPA 161 (308)
T ss_pred ehhhheecCCCCCcCccccccCccCHHHHHHHhc-CCCeEEEEcCcceeEee-eeec------CccCCChhhh--hhhHH
Confidence 1121 111111 23499999999996 88999999999999995 9985 9999886431 12223
Q ss_pred HHhhhcCCCCCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCCcCh-hhHHhCCCCccCCCCCcccccchhhHHhhh
Q 013422 196 KLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGP-RGWMNSGLPWIPPKKALGLDLSNLTETISG 274 (443)
Q Consensus 196 eL~~~lk~~Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGieG~-~gW~~aGLPvv~~~k~~sldl~rqvr~iag 274 (443)
.+.+.....++++|++||..|.|++++..+|+..||++||.|+|||..| ..-...|.-| .++-|+|| +|+...++.
T Consensus 162 ~v~~~~~~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~~~~~g~lw--~G~cFVFD-eRvav~~~l 238 (308)
T COG1054 162 WVEENLDLLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLEDVGTEGSLW--DGKCFVFD-ERVAVPIGL 238 (308)
T ss_pred HHHHHHHhccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhhcCccCcee--ccceeEec-ceecccCcc
Confidence 3332223456789999999999999999999999999999999999544 2222223323 25779999 776665544
Q ss_pred ccccc----CchhhHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHhhhcchhhHHHHHHH
Q 013422 275 AIGEG----SEGFSVTLAIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQ 335 (443)
Q Consensus 275 ~v~~~----s~~~P~~~~laA~vG~Gl~a~s~~e~~lq~~gt~al~~~l~~kl~~~~~rk~t~~~ 335 (443)
..... -...|... .+ ..+.-+.--++.|.|.--..-.-|+.|.+-+++....
T Consensus 239 ~~~~~~~C~~C~~p~~~--------~~-~~~~~~~~~~~~~~C~~ec~~~~~~r~~e~~r~~~~~ 294 (308)
T COG1054 239 VEGDHTPCDNCRNPLCN--------LL-FISCEYCEGKYCGCCSDECSEEPRLRYEERQRQRALA 294 (308)
T ss_pred cCCCcchhhhcCCCCCH--------HH-hhcchhhhcccCCCccHHHhhhhhhHHHHHHHHHHHH
Confidence 44321 11123211 11 2233344456778888887777777777766655443
No 6
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.78 E-value=7.6e-19 Score=148.62 Aligned_cols=100 Identities=20% Similarity=0.193 Sum_probs=83.0
Q ss_pred CcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCC
Q 013422 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (443)
Q Consensus 136 ~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~s 215 (443)
...|+++++.++++++++.++||||++.||.. ||++ |++|||+.+ +...+. .+..+++++||+||++
T Consensus 9 ~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~-ghIp------gainip~~~-----l~~~~~-~l~~~~~~~ivv~C~~ 75 (109)
T cd01533 9 TPSVSADELAALQARGAPLVVLDGRRFDEYRK-MTIP------GSVSCPGAE-----LVLRVG-ELAPDPRTPIVVNCAG 75 (109)
T ss_pred CCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhc-CcCC------CceeCCHHH-----HHHHHH-hcCCCCCCeEEEECCC
Confidence 46799999999997444689999999999997 6665 999999843 222221 2234678999999999
Q ss_pred ChhHHHHHHHHHHcCCCc-EEEcCCCCcChhhHHhCC
Q 013422 216 DGNSELVAELVTINGFKN-AYTIKDGAEGPRGWMNSG 251 (443)
Q Consensus 216 G~RS~~AAk~L~k~GFkn-Vy~L~GGieG~~gW~~aG 251 (443)
|.||..++..|+.+||+| |++|.||+ .+|+.+|
T Consensus 76 G~rs~~a~~~L~~~G~~~~v~~l~gG~---~~W~~~g 109 (109)
T cd01533 76 RTRSIIGAQSLINAGLPNPVAALRNGT---QGWTLAG 109 (109)
T ss_pred CchHHHHHHHHHHCCCCcceeEecCCH---HHHHhcC
Confidence 999999999999999998 99999999 9999876
No 7
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.76 E-value=1.6e-18 Score=146.41 Aligned_cols=104 Identities=19% Similarity=0.303 Sum_probs=88.3
Q ss_pred CcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCC
Q 013422 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (443)
Q Consensus 136 ~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~s 215 (443)
...++++++.++++ +.+.++||||++.||+. ||++ |++|+|+.. +.+.+. . .+++++|+|||.+
T Consensus 4 ~~~is~~el~~~l~-~~~~~ivDvR~~~e~~~-ghi~------gA~~ip~~~-----l~~~~~-~--~~~~~~ivv~c~~ 67 (108)
T PRK00162 4 FECINVEQAHQKLQ-EGGAVLVDIRDPQSFAM-GHAP------GAFHLTNDS-----LGAFMR-Q--ADFDTPVMVMCYH 67 (108)
T ss_pred ccccCHHHHHHHHH-cCCCEEEEcCCHHHHhc-CCCC------CCeECCHHH-----HHHHHH-h--cCCCCCEEEEeCC
Confidence 56799999999996 55689999999999997 6664 999999742 222222 1 3678999999999
Q ss_pred ChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCCC
Q 013422 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (443)
Q Consensus 216 G~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~~ 258 (443)
|.||..++..|+..||+||+++.||+ .+|++.|+|+++.+
T Consensus 68 g~~s~~a~~~L~~~G~~~v~~l~GG~---~~w~~~~~~~~~~~ 107 (108)
T PRK00162 68 GNSSQGAAQYLLQQGFDVVYSIDGGF---EAWRRTFPAEVASG 107 (108)
T ss_pred CCCHHHHHHHHHHCCchheEEecCCH---HHHHhcCCCccCCC
Confidence 99999999999999999999999999 99999999998753
No 8
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.76 E-value=1.7e-18 Score=174.30 Aligned_cols=202 Identities=12% Similarity=0.119 Sum_probs=131.1
Q ss_pred HHHhhhhccceeeeehhhhhhhhhhhhHHHHHhhhhcCCCCCCchhHHHHHHHHhhhhCHH----HHHH-HHHHHHHHHH
Q 013422 51 ECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPL----AIAG-GVTILAVPLV 125 (443)
Q Consensus 51 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~m~~i~~F~~~npi----lva~-~v~~~vL~~~ 125 (443)
.|..-.+.|+++++.+|||++++.+...+++....+-.. +....+. -+.+....+++ .=+- -+..+.+---
T Consensus 28 ~~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~~---~~~~~i~-l~~~~~~~~~f~~l~~~~~~eLv~~G~d~~ 103 (314)
T PRK00142 28 LCKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKAD---PRFADIR-FKISEDDGHAFPRLSVKVRKEIVALGLDDD 103 (314)
T ss_pred HHHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhhC---cCCCCce-EEeccccCCCcccceeeeeeeeeecCCCCC
Confidence 344667889999999999999998876666655555441 1111110 00011111222 0000 0000000000
Q ss_pred HHHhhcCCCCCcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCC
Q 013422 126 LSQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPE 205 (443)
Q Consensus 126 l~~~~~k~~~~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~K 205 (443)
+..... ....|+++++.++++ +++.+|||||++.||+. ||++ ||+|+|+... .++.+.+...+...+
T Consensus 104 v~~~~~---~~~~is~~el~~~l~-~~~~vlIDVR~~~E~~~-GhI~------GAi~ip~~~~--~~~~~~l~~~~~~~k 170 (314)
T PRK00142 104 IDPLEN---VGTYLKPKEVNELLD-DPDVVFIDMRNDYEYEI-GHFE------NAIEPDIETF--REFPPWVEENLDPLK 170 (314)
T ss_pred CCcccc---CCcccCHHHHHHHhc-CCCeEEEECCCHHHHhc-CcCC------CCEeCCHHHh--hhhHHHHHHhcCCCC
Confidence 001111 245699999999996 67899999999999996 7775 9999998642 223333333334468
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCc--cCCCCCcccccchhhHHhh
Q 013422 206 NTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW--IPPKKALGLDLSNLTETIS 273 (443)
Q Consensus 206 dk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPv--v~~~k~~sldl~rqvr~ia 273 (443)
+++||+||.+|.||..++.+|+++||++||+|.||| .+|.+.=-+- .-.++.|.|| +|+...+.
T Consensus 171 dk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi---~~w~~~~~~~~~~w~G~~fVFD-~R~~~~~~ 236 (314)
T PRK00142 171 DKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGI---ITYGEDPETQGLLWDGKLYVFD-ERMAVPIN 236 (314)
T ss_pred cCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchH---HHHHHhhccccceeecCCcccc-CcccCCCC
Confidence 899999999999999999999999999999999999 8997742111 2346779999 77775444
No 9
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3.3e-18 Score=152.38 Aligned_cols=109 Identities=24% Similarity=0.339 Sum_probs=93.7
Q ss_pred CCcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCC------CCCchhHHHHhhhcCCCCCCe
Q 013422 135 SWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKG------DDKPGFLKKLSLKFKEPENTT 208 (443)
Q Consensus 135 ~~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~------~~~~~fl~eL~~~lk~~Kdk~ 208 (443)
....++..++.++++ .++.++||||+++||.. ||++ .++||||.. ..+++|++++... +.+.|+.
T Consensus 21 ~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~-gh~~------~siNiPy~~~~~~~~l~~~eF~kqvg~~-kp~~d~e 91 (136)
T KOG1530|consen 21 NPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQ-GHIP------ASINIPYMSRPGAGALKNPEFLKQVGSS-KPPHDKE 91 (136)
T ss_pred CcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhc-cCCc------ceEeccccccccccccCCHHHHHHhccc-CCCCCCc
Confidence 466799999999996 67799999999999998 5554 899999942 4567888887532 3456779
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCcc
Q 013422 209 LFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWI 255 (443)
Q Consensus 209 IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPvv 255 (443)
||++|++|.||..|.+.|..+||+||.++.||+ .+|.+.|+|..
T Consensus 92 iIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~---~~W~~k~~~~~ 135 (136)
T KOG1530|consen 92 IIFGCASGVRSLKATKILVSAGYKNVGNYPGSY---LAWVDKGGPKK 135 (136)
T ss_pred EEEEeccCcchhHHHHHHHHcCcccccccCccH---HHHHHccCCCC
Confidence 999999999999999999999999999999999 99999998864
No 10
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.75 E-value=5.2e-18 Score=146.49 Aligned_cols=108 Identities=27% Similarity=0.427 Sum_probs=86.7
Q ss_pred cCHHHHHHHhcCCCCceEEeeCChhhhh-hcCCCCCCCCCCCcEEeccCCCC----CchhHHHHhhhcCCCCCCeEEEEe
Q 013422 139 ESARNAYAKLGDDASAQLLDIRAPVEFR-QVGSPDVRGLGKRPVSIVYKGDD----KPGFLKKLSLKFKEPENTTLFILD 213 (443)
Q Consensus 139 ISa~eA~~LLn~~~~avLIDVRt~~Efe-~~Ghp~l~~~~kgAinIPl~~~~----~~~fl~eL~~~lk~~Kdk~IVV~C 213 (443)
||++|+.++++++++.++||||++.||+ . ||++ |++|+|+.+.. ...+...+... .+++++||+||
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~-ghIp------gA~~ip~~~~~~~~~~~~~~~~l~~~--~~~~~~ivv~C 71 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFV-GGVP------DAVHVAWQVYPDMEINPNFLAELEEK--VGKDRPVLLLC 71 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcc-cCCC------CceecchhhccccccCHHHHHHHHhh--CCCCCeEEEEc
Confidence 6899999999855689999999999999 7 5654 99999986421 12344444322 26789999999
Q ss_pred CCChhHHHHHHHHHHcCCCcEEEcCCCCcCh---hhHHhCCCCcc
Q 013422 214 KFDGNSELVAELVTINGFKNAYTIKDGAEGP---RGWMNSGLPWI 255 (443)
Q Consensus 214 ~sG~RS~~AAk~L~k~GFknVy~L~GGieG~---~gW~~aGLPvv 255 (443)
++|.||..+++.|+.+||++++++.|||++. +||+...+||.
T Consensus 72 ~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~~~~~~~~~~~~ 116 (117)
T cd01522 72 RSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAAGHRGGVNGWR 116 (117)
T ss_pred CCCccHHHHHHHHHHCCCCeEEECcCceecCCCCCCcccccCCCC
Confidence 9999999999999999999999999999777 66666666663
No 11
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.75 E-value=4.6e-18 Score=141.31 Aligned_cols=96 Identities=21% Similarity=0.370 Sum_probs=78.0
Q ss_pred cCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhH---HHHhhhcCCCCCCeEEEEeCC
Q 013422 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFL---KKLSLKFKEPENTTLFILDKF 215 (443)
Q Consensus 139 ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl---~eL~~~lk~~Kdk~IVV~C~s 215 (443)
|+++++.++++++++++|||||++.||+. ||++ |++|||+.+.. ..+. ++.... .+++++||+||++
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~-ghi~------ga~~ip~~~~~-~~~~~~~~~~~~~--~~~~~~ivv~C~~ 70 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYER-WKID------GENNTPYFDPY-FDFLEIEEDILDQ--LPDDQEVTVICAK 70 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhh-cccC------CCcccccccch-HHHHHhhHHHHhh--CCCCCeEEEEcCC
Confidence 68899999997556789999999999997 6664 99999986521 1111 111111 3678999999999
Q ss_pred ChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHH
Q 013422 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (443)
Q Consensus 216 G~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~ 248 (443)
|.||..+++.|+++||+ +|+|.||+ .+|+
T Consensus 71 G~rs~~aa~~L~~~G~~-~~~l~GG~---~~W~ 99 (100)
T cd01523 71 EGSSQFVAELLAERGYD-VDYLAGGM---KAWS 99 (100)
T ss_pred CCcHHHHHHHHHHcCce-eEEeCCcH---Hhhc
Confidence 99999999999999998 99999999 9996
No 12
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.73 E-value=9e-18 Score=139.08 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=82.9
Q ss_pred cccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCCC
Q 013422 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFD 216 (443)
Q Consensus 137 g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG 216 (443)
..|+++++.++++ + +.++||||+++||.. ||++ |++|||+.+.. ... ...+++++||+||++|
T Consensus 2 ~~i~~~el~~~~~-~-~~~liDvR~~~e~~~-~hi~------ga~~ip~~~~~-----~~~---~~~~~~~~iv~~c~~g 64 (99)
T cd01527 2 TTISPNDACELLA-Q-GAVLVDIREPDEYLR-ERIP------GARLVPLSQLE-----SEG---LPLVGANAIIFHCRSG 64 (99)
T ss_pred CccCHHHHHHHHH-C-CCEEEECCCHHHHHh-CcCC------CCEECChhHhc-----ccc---cCCCCCCcEEEEeCCC
Confidence 3589999999996 3 389999999999997 6765 99999986421 111 1246789999999999
Q ss_pred hhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCc
Q 013422 217 GNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (443)
Q Consensus 217 ~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPv 254 (443)
.||..++..|.++||++|+++.||+ .+|+..|+|+
T Consensus 65 ~~s~~~~~~L~~~g~~~v~~l~gG~---~~W~~~~~~~ 99 (99)
T cd01527 65 MRTQQNAERLAAISAGEAYVLEGGL---DAWKAAGLPV 99 (99)
T ss_pred chHHHHHHHHHHcCCccEEEeeCCH---HHHHHCcCCC
Confidence 9999999999999999999999999 9999999985
No 13
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.72 E-value=3e-17 Score=150.57 Aligned_cols=110 Identities=21% Similarity=0.207 Sum_probs=85.7
Q ss_pred CCcccCHHHHHHHhcCCCCceEEeeCChh----hhhhc--------CCCCCCCCCCCcEEeccCC---CCC---chhHHH
Q 013422 135 SWGVESARNAYAKLGDDASAQLLDIRAPV----EFRQV--------GSPDVRGLGKRPVSIVYKG---DDK---PGFLKK 196 (443)
Q Consensus 135 ~~g~ISa~eA~~LLn~~~~avLIDVRt~~----Efe~~--------Ghp~l~~~~kgAinIPl~~---~~~---~~fl~e 196 (443)
+...|+++++.++++ +++.+|||||++. ||... +|++ ||+|||+.. ... +.|.+.
T Consensus 34 ~~~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIP------GAv~ip~~~~~~l~~~~~~~~~~~ 106 (162)
T TIGR03865 34 GARVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIP------GSLWLPNTGYGNLAPAWQAYFRRG 106 (162)
T ss_pred CccccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCC------CcEEecccCCCCCCCchhHHHHHH
Confidence 467899999999997 6678999999876 46542 2554 999999632 111 123333
Q ss_pred HhhhcCCCCCCeEEEEeCCCh-hHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCc
Q 013422 197 LSLKFKEPENTTLFILDKFDG-NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (443)
Q Consensus 197 L~~~lk~~Kdk~IVV~C~sG~-RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPv 254 (443)
+......++|++||+||++|. ||..++..|+++||+|||+|.||| .+|+.+|+|+
T Consensus 107 l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~---~aW~~aG~Pv 162 (162)
T TIGR03865 107 LERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGT---DGWQAAGLPL 162 (162)
T ss_pred HHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCH---HHHHHcCCCC
Confidence 322112368999999999997 899999999999999999999999 9999999996
No 14
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.71 E-value=4e-17 Score=134.97 Aligned_cols=94 Identities=13% Similarity=0.208 Sum_probs=76.0
Q ss_pred cCHHHHHHHhcCC-CCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCCCh
Q 013422 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (443)
Q Consensus 139 ISa~eA~~LLn~~-~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~ 217 (443)
||++|+.++++++ ++.++||||++.||+. ||++ |++|||+.+ +..... .+...++++||+||++|.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~-ghip------ga~~ip~~~-----l~~~~~-~~~~~~~~~iv~~c~~G~ 67 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEA-GHLP------GFRHTPGGQ-----LVQETD-HFAPVRGARIVLADDDGV 67 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHh-CCCC------CcEeCCHHH-----HHHHHH-HhcccCCCeEEEECCCCC
Confidence 6889999999744 3678999999999997 6664 999999742 222221 122345789999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013422 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (443)
Q Consensus 218 RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~ 249 (443)
||..++..|+.+||+ |+++.||+ .+|+.
T Consensus 68 rs~~aa~~L~~~G~~-v~~l~GG~---~~W~~ 95 (95)
T cd01534 68 RADMTASWLAQMGWE-VYVLEGGL---AAALA 95 (95)
T ss_pred hHHHHHHHHHHcCCE-EEEecCcH---HHhcC
Confidence 999999999999999 99999999 99963
No 15
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3.6e-17 Score=136.04 Aligned_cols=101 Identities=25% Similarity=0.408 Sum_probs=80.1
Q ss_pred CHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCC-cEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCCChh
Q 013422 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKR-PVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGN 218 (443)
Q Consensus 140 Sa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kg-AinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~R 218 (443)
.......+. ..++.++||||++.||+..|++ + ++|||+.+.. .+...+. .+++++|||||++|.|
T Consensus 8 ~~~~~~~~~-~~~~~~liDvR~~~e~~~~~i~-------~~~~~ip~~~~~--~~~~~~~----~~~~~~ivv~C~~G~r 73 (110)
T COG0607 8 SEDEAALLL-AGEDAVLLDVREPEEYERGHIP-------GAAINIPLSELK--AAENLLE----LPDDDPIVVYCASGVR 73 (110)
T ss_pred CHHHHHHhh-ccCCCEEEeccChhHhhhcCCC-------cceeeeecccch--hhhcccc----cCCCCeEEEEeCCCCC
Confidence 333333333 3678999999999999985555 7 9999997521 1111110 3679999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCC
Q 013422 219 SELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (443)
Q Consensus 219 S~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~ 257 (443)
|..|++.|+++||++++++.||| .+|...++|+...
T Consensus 74 S~~aa~~L~~~G~~~~~~l~gG~---~~w~~~~~~~~~~ 109 (110)
T COG0607 74 SAAAAAALKLAGFTNVYNLDGGI---DAWKGAGLPLVRG 109 (110)
T ss_pred hHHHHHHHHHcCCccccccCCcH---HHHHhcCCCcccC
Confidence 99999999999999999999999 9999999998764
No 16
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.69 E-value=6.9e-17 Score=139.88 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=85.5
Q ss_pred CcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhh----hcCCCCCCeEEE
Q 013422 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL----KFKEPENTTLFI 211 (443)
Q Consensus 136 ~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~----~lk~~Kdk~IVV 211 (443)
...|+++++.+++++++++++||||++.||+. ||++ |++|||+.+.. .....+.. ....+++++||+
T Consensus 7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~-~hIp------gai~ip~~~~~--~~~~~~~~~~~~~~~~~~~~~ivv 77 (122)
T cd01526 7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEI-CRLP------EAINIPLSELL--SKAAELKSLQELPLDNDKDSPIYV 77 (122)
T ss_pred ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhc-ccCC------CCeEccHHHHh--hhhhhhhhhhhcccccCCCCcEEE
Confidence 45799999999997546889999999999997 6654 99999986411 11112210 112367899999
Q ss_pred EeCCChhHHHHHHHHHHcCC-CcEEEcCCCCcChhhHHhCCCCc
Q 013422 212 LDKFDGNSELVAELVTINGF-KNAYTIKDGAEGPRGWMNSGLPW 254 (443)
Q Consensus 212 ~C~sG~RS~~AAk~L~k~GF-knVy~L~GGieG~~gW~~aGLPv 254 (443)
||++|.||..+++.|+..|| ++|+.+.||| .+|+....+.
T Consensus 78 ~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~---~~W~~~~~~~ 118 (122)
T cd01526 78 VCRRGNDSQTAVRKLKELGLERFVRDIIGGL---KAWADKVDPT 118 (122)
T ss_pred ECCCCCcHHHHHHHHHHcCCccceeeecchH---HHHHHHhCcc
Confidence 99999999999999999999 7999999999 9999887655
No 17
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.69 E-value=9.4e-17 Score=133.91 Aligned_cols=96 Identities=23% Similarity=0.357 Sum_probs=78.7
Q ss_pred cCHHHHHHHhcCC-CCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCCCh
Q 013422 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (443)
Q Consensus 139 ISa~eA~~LLn~~-~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~ 217 (443)
|+++++.++++.+ ++.++||||++.||+. +|++ |++|+|+.+ ...+.+.+. ..+++++||+||++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~-~hI~------ga~~ip~~~--~~~~~~~~~---~~~~~~~vv~~c~~g~ 69 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEI-AFLP------GFLHLPMSE--IPERSKELD---SDNPDKDIVVLCHHGG 69 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhc-CcCC------CCEecCHHH--HHHHHHHhc---ccCCCCeEEEEeCCCc
Confidence 7899999999743 4689999999999997 5664 999999853 122333332 1256899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013422 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (443)
Q Consensus 218 RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~ 249 (443)
||..++..|.+.||++|+++.||+ .+|++
T Consensus 70 rs~~~~~~l~~~G~~~v~~l~GG~---~~w~~ 98 (101)
T cd01528 70 RSMQVAQWLLRQGFENVYNLQGGI---DAWSL 98 (101)
T ss_pred hHHHHHHHHHHcCCccEEEecCCH---HHHhh
Confidence 999999999999999999999999 99975
No 18
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.68 E-value=9.9e-17 Score=131.15 Aligned_cols=94 Identities=15% Similarity=0.250 Sum_probs=77.9
Q ss_pred cCHHHHHHHhcCCCCceEEeeCChhhhhhc-CCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCCCh
Q 013422 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQV-GSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (443)
Q Consensus 139 ISa~eA~~LLn~~~~avLIDVRt~~Efe~~-Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~ 217 (443)
|+++++.++++++.+.++||||++.||+.. ||++ |++|+|+.+ +.+.+. . .+++++||+||++|.
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~------ga~~ip~~~-----~~~~~~-~--~~~~~~ivv~c~~g~ 67 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIP------GAIHLDEDS-----LDDWLG-D--LDRDRPVVVYCYHGN 67 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCC------CCeeCCHHH-----HHHHHh-h--cCCCCCEEEEeCCCC
Confidence 789999999874467999999999999862 5654 999999853 222221 1 367899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013422 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (443)
Q Consensus 218 RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~ 249 (443)
||..++..|+..||++|+++.||+ .+|++
T Consensus 68 ~s~~a~~~l~~~G~~~v~~l~gG~---~~w~~ 96 (96)
T cd01444 68 SSAQLAQALREAGFTDVRSLAGGF---EAWRR 96 (96)
T ss_pred hHHHHHHHHHHcCCceEEEcCCCH---HHhcC
Confidence 999999999999999999999999 99963
No 19
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.68 E-value=1.8e-16 Score=132.03 Aligned_cols=99 Identities=21% Similarity=0.236 Sum_probs=78.0
Q ss_pred CHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCC------chhHHHHhhhcCCCCCCeEEEEe
Q 013422 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK------PGFLKKLSLKFKEPENTTLFILD 213 (443)
Q Consensus 140 Sa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~------~~fl~eL~~~lk~~Kdk~IVV~C 213 (443)
|++++.++++.+++.+|||||++.||+. ||++ ||+|+|+.+... +.|.+.+. ....+++++||+||
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~-ghIp------gA~~ip~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~c 73 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKT-GKIP------GAINIPLSSLPDALALSEEEFEKKYG-FPKPSKDKELIFYC 73 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhc-CcCC------CcEEechHHhhhhhCCCHHHHHHHhc-ccCCCCCCeEEEEC
Confidence 6788888885256799999999999996 6665 999999865211 12222221 11346789999999
Q ss_pred CCChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013422 214 KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (443)
Q Consensus 214 ~sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~ 249 (443)
++|.||..++..|..+||+||+++.||+ .+|.+
T Consensus 74 ~~g~~s~~~~~~l~~~G~~~v~~~~Gg~---~~W~~ 106 (106)
T cd01519 74 KAGVRSKAAAELARSLGYENVGNYPGSW---LDWAA 106 (106)
T ss_pred CCcHHHHHHHHHHHHcCCccceecCCcH---HHHcC
Confidence 9999999999999999999999999999 99964
No 20
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.67 E-value=1e-16 Score=133.56 Aligned_cols=100 Identities=19% Similarity=0.307 Sum_probs=77.1
Q ss_pred cCHHHHHHHhcCC-CCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCC-CchhHHHHh--hhcCCCCCCeEEEEeC
Q 013422 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDD-KPGFLKKLS--LKFKEPENTTLFILDK 214 (443)
Q Consensus 139 ISa~eA~~LLn~~-~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~-~~~fl~eL~--~~lk~~Kdk~IVV~C~ 214 (443)
||++++.+++.++ ++.+|||||++.||.. ||++ |++|||+.+.. .......+. ..+...++++||+||.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~-ghIp------gA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~c~ 73 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRR-GHIE------GSINIPFSSVFLKEGELEQLPTVPRLENYKGKIIVIVSH 73 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhC-CccC------CCEeCCHHHhcccccccccccchHHHHhhcCCeEEEEeC
Confidence 6899999999642 3689999999999997 6664 99999985411 001111111 1122245889999999
Q ss_pred CChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHH
Q 013422 215 FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (443)
Q Consensus 215 sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~ 248 (443)
+|.||..++..|+..||++||+|.||+ .+|+
T Consensus 74 ~g~~s~~~a~~L~~~G~~~v~~l~GG~---~a~~ 104 (105)
T cd01525 74 SHKHAALFAAFLVKCGVPRVCILDGGI---NALK 104 (105)
T ss_pred CCccHHHHHHHHHHcCCCCEEEEeCcH---HHhc
Confidence 999999999999999999999999999 9996
No 21
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.67 E-value=1.5e-16 Score=131.39 Aligned_cols=101 Identities=23% Similarity=0.262 Sum_probs=79.2
Q ss_pred cCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHh--hhcCCCCCCeEEEEeCCC
Q 013422 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLS--LKFKEPENTTLFILDKFD 216 (443)
Q Consensus 139 ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~--~~lk~~Kdk~IVV~C~sG 216 (443)
|+++++.++++ +++.++||||++.||...||++ |++|+|+.... .+.+... .....+++++|||||.+|
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIp------ga~~ip~~~~~--~~~~~~~~~~~~~~~~~~~ivv~c~~g 71 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIP------GAFHAPRGMLE--FWADPDSPYHKPAFAEDKPFVFYCASG 71 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCC------CcEEcccchhh--hhcCccccccccCCCCCCeEEEEcCCC
Confidence 68899999996 5678999999999995457775 99999975311 1111000 000236789999999999
Q ss_pred hhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCC
Q 013422 217 GNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSG 251 (443)
Q Consensus 217 ~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aG 251 (443)
.||..++..|...||++|+.+.||+ .+|..+|
T Consensus 72 ~~s~~~~~~l~~~G~~~v~~l~Gg~---~~w~~~g 103 (103)
T cd01447 72 WRSALAGKTLQDMGLKPVYNIEGGF---KDWKEAG 103 (103)
T ss_pred CcHHHHHHHHHHcChHHhEeecCcH---HHHhhcC
Confidence 9999999999999999999999999 9998765
No 22
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.67 E-value=1.9e-16 Score=138.14 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=78.4
Q ss_pred cccCHHHHHHHhcCC-----CCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhh---hcCCCCCCe
Q 013422 137 GVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL---KFKEPENTT 208 (443)
Q Consensus 137 g~ISa~eA~~LLn~~-----~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~---~lk~~Kdk~ 208 (443)
..||++++.++++++ +++++||||++.||+. ||++ ||+|||+.+ .+.+.+.. .+..+++++
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~-ghI~------gA~~ip~~~----~l~~~~~~~~~~~~~~~~~~ 70 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNG-GHIK------GAVNLSTKD----ELEEFFLDKPGVASKKKRRV 70 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhC-CcCC------CCEeCCcHH----HHHHHHHHhhcccccCCCCE
Confidence 359999999999743 4789999999999997 6765 999999842 12222211 112478999
Q ss_pred EEEEeC-CChhHHHHHHHHHHc------------CCCcEEEcCCCCcChhhHH
Q 013422 209 LFILDK-FDGNSELVAELVTIN------------GFKNAYTIKDGAEGPRGWM 248 (443)
Q Consensus 209 IVV~C~-sG~RS~~AAk~L~k~------------GFknVy~L~GGieG~~gW~ 248 (443)
||+||. +|.||..++..|+++ ||++||+|+||| .+|.
T Consensus 71 vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~---~~f~ 120 (121)
T cd01530 71 LIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGY---KNFF 120 (121)
T ss_pred EEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChh---Hhhc
Confidence 999997 999999999999985 999999999999 8884
No 23
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.66 E-value=3e-16 Score=133.38 Aligned_cols=102 Identities=13% Similarity=0.128 Sum_probs=83.4
Q ss_pred CCcccCHHHHHHHhcCC-CCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEe
Q 013422 135 SWGVESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILD 213 (443)
Q Consensus 135 ~~g~ISa~eA~~LLn~~-~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C 213 (443)
....++++++.+++.++ ++.++||||++.||.. ||++ |++|||+..+. . ..+. ..+++++||+||
T Consensus 6 ~~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~-ghIp------gA~~ip~~~l~-~---~~~~---~i~~~~~vvvyc 71 (110)
T cd01521 6 LAFETDCWDVAIALKNGKPDFVLVDVRSAEAYAR-GHVP------GAINLPHREIC-E---NATA---KLDKEKLFVVYC 71 (110)
T ss_pred eeeecCHHHHHHHHHcCCCCEEEEECCCHHHHhc-CCCC------CCEeCCHHHhh-h---Hhhh---cCCCCCeEEEEE
Confidence 35679999999999644 5689999999999997 6664 99999985311 0 1111 246789999999
Q ss_pred CCCh--hHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCc
Q 013422 214 KFDG--NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (443)
Q Consensus 214 ~sG~--RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPv 254 (443)
++|. +|..++..|+.+||+ +++|.||+ .+|+.+|+|+
T Consensus 72 ~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~---~~W~~~g~~~ 110 (110)
T cd01521 72 DGPGCNGATKAALKLAELGFP-VKEMIGGL---DWWKREGYAT 110 (110)
T ss_pred CCCCCchHHHHHHHHHHcCCe-EEEecCCH---HHHHHCCCCC
Confidence 9984 899999999999995 99999999 9999999985
No 24
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.65 E-value=8.6e-16 Score=131.75 Aligned_cols=101 Identities=19% Similarity=0.181 Sum_probs=80.9
Q ss_pred cCHHHHHHHhcCCCCceEEeeCCh-------hhhhhcCCCCCCCCCCCcEEeccCCCCC------------chhHHHHhh
Q 013422 139 ESARNAYAKLGDDASAQLLDIRAP-------VEFRQVGSPDVRGLGKRPVSIVYKGDDK------------PGFLKKLSL 199 (443)
Q Consensus 139 ISa~eA~~LLn~~~~avLIDVRt~-------~Efe~~Ghp~l~~~~kgAinIPl~~~~~------------~~fl~eL~~ 199 (443)
++++++.++++ +++.+|||||++ .||+. ||++ |++|||+.+... .++.+.+ .
T Consensus 2 i~~~~l~~~l~-~~~~~ivDvR~~~~~~~~~~~~~~-ghI~------ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 72 (122)
T cd01448 2 VSPDWLAEHLD-DPDVRILDARWYLPDRDGRKEYLE-GHIP------GAVFFDLDEDLDDKSPGPHMLPSPEEFAELL-G 72 (122)
T ss_pred cCHHHHHHHhC-CCCeEEEEeecCCCCCchhhHHhh-CCCC------CCEEcChhhccccCCCCCCCCCCHHHHHHHH-H
Confidence 78999999996 567899999999 99987 6665 999999864211 1111222 2
Q ss_pred hcCCCCCCeEEEEeCC-ChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCC
Q 013422 200 KFKEPENTTLFILDKF-DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSG 251 (443)
Q Consensus 200 ~lk~~Kdk~IVV~C~s-G~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aG 251 (443)
.+..+++++||+||++ |.+|..++..|+.+||++||++.||+ .+|.++|
T Consensus 73 ~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~---~~W~~~g 122 (122)
T cd01448 73 SLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGL---QAWKAEG 122 (122)
T ss_pred HcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH---HHHHhCc
Confidence 2245789999999999 58999999999999999999999999 9999875
No 25
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.64 E-value=9.5e-16 Score=122.87 Aligned_cols=93 Identities=25% Similarity=0.377 Sum_probs=73.4
Q ss_pred CCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCch------hHHHHhhhcCCCCCCeEEEEeCCChhHHHHHH
Q 013422 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPG------FLKKLSLKFKEPENTTLFILDKFDGNSELVAE 224 (443)
Q Consensus 151 ~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~------fl~eL~~~lk~~Kdk~IVV~C~sG~RS~~AAk 224 (443)
+++.+|||||++.||.. ||++ |++|+|+....... ............++++||+||.+|.++..++.
T Consensus 2 ~~~~~ivDvR~~~e~~~-~hi~------ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~ 74 (100)
T smart00450 2 DEKVVLLDVRSPEEYEG-GHIP------GAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAW 74 (100)
T ss_pred CCCEEEEECCCHHHhcc-CCCC------CceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHH
Confidence 56789999999999997 6664 99999986421110 00111112235788999999999999999999
Q ss_pred HHHHcCCCcEEEcCCCCcChhhHHhCCCC
Q 013422 225 LVTINGFKNAYTIKDGAEGPRGWMNSGLP 253 (443)
Q Consensus 225 ~L~k~GFknVy~L~GGieG~~gW~~aGLP 253 (443)
.|++.||++||+|.||+ .+|++.|+|
T Consensus 75 ~l~~~G~~~v~~l~GG~---~~w~~~~~~ 100 (100)
T smart00450 75 LLRELGFKNVYLLDGGY---KEWSAAGPP 100 (100)
T ss_pred HHHHcCCCceEEecCCH---HHHHhcCCC
Confidence 99999999999999999 999999875
No 26
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.63 E-value=1.2e-15 Score=133.46 Aligned_cols=98 Identities=20% Similarity=0.287 Sum_probs=76.1
Q ss_pred cCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchh------------------------H
Q 013422 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGF------------------------L 194 (443)
Q Consensus 139 ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~f------------------------l 194 (443)
||++++.++++ ++.++||||++.||.. ||++ ||+|||+.......+ +
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~-ghIp------gAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFE-GHLP------GAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKL 71 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhcc-CcCC------CcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhH
Confidence 68999999995 5689999999999997 6665 999999953110000 1
Q ss_pred HHHhhh---cCCCCCCeEEEEeC-CChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013422 195 KKLSLK---FKEPENTTLFILDK-FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (443)
Q Consensus 195 ~eL~~~---lk~~Kdk~IVV~C~-sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~ 249 (443)
+++..+ ...+++++|||||+ +|.||..++..|+.+|| +|++|.||+ .+|+.
T Consensus 72 ~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~---~aw~~ 126 (128)
T cd01520 72 KRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGY---KAYRK 126 (128)
T ss_pred HHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcH---HHHHh
Confidence 111111 13578999999997 68999999999999999 699999999 99975
No 27
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.63 E-value=7.4e-16 Score=130.95 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=79.2
Q ss_pred cCHHHHHHHhcCCCCceEEeeCChhhhhh----------cCCCCCCCCCCCcEEeccCCCC-------CchhHHHHhhhc
Q 013422 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQ----------VGSPDVRGLGKRPVSIVYKGDD-------KPGFLKKLSLKF 201 (443)
Q Consensus 139 ISa~eA~~LLn~~~~avLIDVRt~~Efe~----------~Ghp~l~~~~kgAinIPl~~~~-------~~~fl~eL~~~l 201 (443)
++++++.++++ +++.+|||||++.||.. .||++ |++|+|+.+.. ++..++++...+
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIp------gA~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 73 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIP------GAVNIPWTSLLDEDGTFKSPEELRALFAAL 73 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCC------CCcccChHHhcCCCCCcCCHHHHHHHHHHc
Confidence 57899999986 56789999999999974 16664 99999986421 111222222233
Q ss_pred CCCCCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013422 202 KEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (443)
Q Consensus 202 k~~Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~ 249 (443)
..+++++||+||++|.||..++..|+.+||++|+++.||+ .+|.+
T Consensus 74 ~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~---~~W~~ 118 (118)
T cd01449 74 GITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW---SEWGS 118 (118)
T ss_pred CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH---HHhcC
Confidence 4568899999999999999999999999999999999999 99964
No 28
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.62 E-value=1.2e-15 Score=130.09 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=77.9
Q ss_pred cccCHHHHHHHhcCC-CCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeC-
Q 013422 137 GVESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDK- 214 (443)
Q Consensus 137 g~ISa~eA~~LLn~~-~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~- 214 (443)
..|+++++.++++++ ++.++||||++ ||.. ||++ |++|+|+.+. .....++......+++++||+||.
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~-~hi~------gA~~ip~~~l--~~~~~~~~~~~~~~~~~~iv~yC~~ 71 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAG-GHIK------GSWHYPSTRF--KAQLNQLVQLLSGSKKDTVVFHCAL 71 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCC-CcCC------CCEecCHHHH--hhCHHHHHHHHhcCCCCeEEEEeec
Confidence 358999999999643 56789999999 9997 6665 9999998642 112233322222356889999998
Q ss_pred CChhHHHHHHHHHH--------cCCCcEEEcCCCCcChhhHHhC
Q 013422 215 FDGNSELVAELVTI--------NGFKNAYTIKDGAEGPRGWMNS 250 (443)
Q Consensus 215 sG~RS~~AAk~L~k--------~GFknVy~L~GGieG~~gW~~a 250 (443)
+|.||..+++.|.+ .||+|||+|.||+ .+|+++
T Consensus 72 ~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~---~~w~~~ 112 (113)
T cd01531 72 SQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGF---NAWESS 112 (113)
T ss_pred CCcchHHHHHHHHHHHHHhccccCCCeEEEEcChH---HHHHhh
Confidence 77899999998765 4999999999999 999864
No 29
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.61 E-value=2.9e-15 Score=124.06 Aligned_cols=100 Identities=23% Similarity=0.310 Sum_probs=77.3
Q ss_pred CHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCC---CCchhHHH----Hhh-hcCCCCCCeEEE
Q 013422 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGD---DKPGFLKK----LSL-KFKEPENTTLFI 211 (443)
Q Consensus 140 Sa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~---~~~~fl~e----L~~-~lk~~Kdk~IVV 211 (443)
||+|+.+++ .+++.+|||||++.||.. ||++ |++|||+... ....+.+. +.. ....+++++||+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~-~hI~------ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 72 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYER-GHIP------GAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVF 72 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHH-SBET------TEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEE
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHc-CCCC------CCcccccccccccccccccccccccccccccccccccccee
Confidence 689999999 588999999999999998 6664 9999998320 01111111 111 113477889999
Q ss_pred EeCCChhHHHHHHH-----HHHcCCCcEEEcCCCCcChhhHHhC
Q 013422 212 LDKFDGNSELVAEL-----VTINGFKNAYTIKDGAEGPRGWMNS 250 (443)
Q Consensus 212 ~C~sG~RS~~AAk~-----L~k~GFknVy~L~GGieG~~gW~~a 250 (443)
||++|.++..++.. |.++||++|++|.||+ .+|.++
T Consensus 73 yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~---~~w~~~ 113 (113)
T PF00581_consen 73 YCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGF---EAWKAE 113 (113)
T ss_dssp EESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHH---HHHHHH
T ss_pred eeecccccchhHHHHHHHHHHHcCCCCEEEecChH---HHHhcC
Confidence 99999999988887 8999999999999999 999863
No 30
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.60 E-value=3.5e-15 Score=134.58 Aligned_cols=100 Identities=16% Similarity=0.247 Sum_probs=81.3
Q ss_pred HHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCCChhHHHHH
Q 013422 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVA 223 (443)
Q Consensus 144 A~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~RS~~AA 223 (443)
+.+++..+.+.+|||||++.||+. ||++ |++++|.. .+.+.+. . .+++++|||||.+|.+|..++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~-gHIp------gAi~~~~~-----~l~~~l~-~--l~~~~~vVv~c~~g~~a~~aa 66 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVK-RHIP------GAWWVLRA-----QLAQALE-K--LPAAERYVLTCGSSLLARFAA 66 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHc-CCCC------CceeCCHH-----HHHHHHH-h--cCCCCCEEEEeCCChHHHHHH
Confidence 345665455689999999999997 6664 99999853 2333332 2 245789999999999999999
Q ss_pred HHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCCCCCc
Q 013422 224 ELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKAL 261 (443)
Q Consensus 224 k~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~~k~~ 261 (443)
..|+..||++|++|.||+ .+|+.+|+|+..+.+..
T Consensus 67 ~~L~~~G~~~v~~L~GG~---~aW~~~g~pl~~~~~~~ 101 (145)
T cd01535 67 ADLAALTVKPVFVLEGGT---AAWIAAGLPVESGETRL 101 (145)
T ss_pred HHHHHcCCcCeEEecCcH---HHHHHCCCCcccCCCCC
Confidence 999999999999999999 99999999999875544
No 31
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.59 E-value=3.8e-15 Score=123.06 Aligned_cols=86 Identities=16% Similarity=0.306 Sum_probs=67.9
Q ss_pred HhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCCChh--HHHHHH
Q 013422 147 KLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGN--SELVAE 224 (443)
Q Consensus 147 LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~R--S~~AAk 224 (443)
+++ ++++++||||++.||.. +|++ |++|||+.. +.......+ .+++++|||||++|.| |..++.
T Consensus 5 ~~~-~~~~~liDvR~~~e~~~-~hi~------ga~~ip~~~-----~~~~~~~~~-~~~~~~ivl~c~~G~~~~s~~aa~ 70 (92)
T cd01532 5 LLA-REEIALIDVREEDPFAQ-SHPL------WAANLPLSR-----LELDAWVRI-PRRDTPIVVYGEGGGEDLAPRAAR 70 (92)
T ss_pred hhc-CCCeEEEECCCHHHHhh-CCcc------cCeeCCHHH-----HHhhhHhhC-CCCCCeEEEEeCCCCchHHHHHHH
Confidence 444 67899999999999998 6664 999999743 111111111 2468999999999987 689999
Q ss_pred HHHHcCCCcEEEcCCCCcChhhHHh
Q 013422 225 LVTINGFKNAYTIKDGAEGPRGWMN 249 (443)
Q Consensus 225 ~L~k~GFknVy~L~GGieG~~gW~~ 249 (443)
.|+++||++|++|+||+ .+|++
T Consensus 71 ~L~~~G~~~v~~l~GG~---~~W~~ 92 (92)
T cd01532 71 RLSELGYTDVALLEGGL---QGWRA 92 (92)
T ss_pred HHHHcCccCEEEccCCH---HHHcC
Confidence 99999999999999999 99974
No 32
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.59 E-value=6e-15 Score=120.83 Aligned_cols=89 Identities=18% Similarity=0.337 Sum_probs=74.1
Q ss_pred cCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCCChh
Q 013422 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGN 218 (443)
Q Consensus 139 ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~R 218 (443)
++++++.+++ .++.++||+|+++||.. ||++ |++|+|+.+ +.+.+. . .+++++||+||++|.+
T Consensus 1 ~~~~e~~~~~--~~~~~iiD~R~~~~~~~-~hip------gA~~ip~~~-----~~~~~~-~--~~~~~~vvl~c~~g~~ 63 (90)
T cd01524 1 VQWHELDNYR--ADGVTLIDVRTPQEFEK-GHIK------GAINIPLDE-----LRDRLN-E--LPKDKEIIVYCAVGLR 63 (90)
T ss_pred CCHHHHHHHh--cCCCEEEECCCHHHHhc-CCCC------CCEeCCHHH-----HHHHHH-h--cCCCCcEEEEcCCChh
Confidence 4688988888 35689999999999997 6665 999999742 222222 1 3567899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEcCCCCcChhhHH
Q 013422 219 SELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (443)
Q Consensus 219 S~~AAk~L~k~GFknVy~L~GGieG~~gW~ 248 (443)
+..+++.|++.|| ++++|.||+ .+|+
T Consensus 64 a~~~a~~L~~~G~-~v~~l~GG~---~~w~ 89 (90)
T cd01524 64 GYIAARILTQNGF-KVKNLDGGY---KTYS 89 (90)
T ss_pred HHHHHHHHHHCCC-CEEEecCCH---HHhc
Confidence 9999999999999 999999999 9996
No 33
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.59 E-value=3.9e-15 Score=123.09 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=68.3
Q ss_pred CCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCC-CchhHHHHhhhcCCCCCCeEEEEeCCChhHHHHHHHHHHc
Q 013422 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDD-KPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTIN 229 (443)
Q Consensus 151 ~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~-~~~fl~eL~~~lk~~Kdk~IVV~C~sG~RS~~AAk~L~k~ 229 (443)
+++.++||||++.||+. ||++ |++|+|+.+.. .....+.+. ..+++++||+||.+|.+|..++..|+..
T Consensus 10 ~~~~~iiDvR~~~~~~~-~hIp------gA~~ip~~~~~~~~~~~~~~~---~~~~~~~ivv~c~~g~~s~~~~~~l~~~ 79 (96)
T cd01529 10 EPGTALLDVRAEDEYAA-GHLP------GKRSIPGAALVLRSQELQALE---APGRATRYVLTCDGSLLARFAAQELLAL 79 (96)
T ss_pred CCCeEEEeCCCHHHHcC-CCCC------CcEeCCHHHhcCCHHHHHHhh---cCCCCCCEEEEeCChHHHHHHHHHHHHc
Confidence 56789999999999998 6664 99999975321 111111111 2367899999999999999999999999
Q ss_pred CCCcEEEcCCCCcChhhHHh
Q 013422 230 GFKNAYTIKDGAEGPRGWMN 249 (443)
Q Consensus 230 GFknVy~L~GGieG~~gW~~ 249 (443)
||++|++|.||| .+|++
T Consensus 80 G~~~v~~l~GG~---~~W~~ 96 (96)
T cd01529 80 GGKPVALLDGGT---SAWVA 96 (96)
T ss_pred CCCCEEEeCCCH---HHhcC
Confidence 999999999999 99963
No 34
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.58 E-value=6.2e-15 Score=150.98 Aligned_cols=106 Identities=18% Similarity=0.258 Sum_probs=88.1
Q ss_pred CcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCC
Q 013422 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (443)
Q Consensus 136 ~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~s 215 (443)
+..|+++++.+++. ++.++||||+++||+. ||++ |++|+|+.+ +.+.+. .+..+++++||+||++
T Consensus 2 v~~is~~el~~~l~--~~~~ivDvR~~~e~~~-ghIp------gAi~ip~~~-----l~~~~~-~~~~~~~~~IvvyC~~ 66 (376)
T PRK08762 2 IREISPAEARARAA--QGAVLIDVREAHERAS-GQAE------GALRIPRGF-----LELRIE-THLPDRDREIVLICAS 66 (376)
T ss_pred CceeCHHHHHHHHh--CCCEEEECCCHHHHhC-CcCC------CCEECCHHH-----HHHHHh-hhcCCCCCeEEEEcCC
Confidence 45799999999995 3589999999999997 6664 999999842 222222 1123678999999999
Q ss_pred ChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCCCC
Q 013422 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKK 259 (443)
Q Consensus 216 G~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~~k 259 (443)
|.||..+++.|+.+||++|+++.||+ .+|++.|+|+..+..
T Consensus 67 G~rs~~aa~~L~~~G~~~v~~l~GG~---~~W~~~g~p~~~~~~ 107 (376)
T PRK08762 67 GTRSAHAAATLRELGYTRVASVAGGF---SAWKDAGLPLERPRL 107 (376)
T ss_pred CcHHHHHHHHHHHcCCCceEeecCcH---HHHHhcCCccccccC
Confidence 99999999999999999999999999 999999999987643
No 35
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.58 E-value=5e-15 Score=126.47 Aligned_cols=99 Identities=14% Similarity=0.187 Sum_probs=74.3
Q ss_pred cccCHHHHHHHhcCC-----CCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEE
Q 013422 137 GVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFI 211 (443)
Q Consensus 137 g~ISa~eA~~LLn~~-----~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV 211 (443)
..|+++++.++++++ ++.++||||++ ||+. ||++ |++|||+... ...+.++...+...++++||+
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~-ghip------gAi~ip~~~~--~~~~~~~~~~~~~~~~~~iv~ 71 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEG-GHIK------GSINLPAQSC--YQTLPQVYALFSLAGVKLAIF 71 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCC-Cccc------CceecchhHH--HHHHHHHHHHhhhcCCCEEEE
Confidence 468999999999744 46899999999 9997 6765 9999998641 122222222222356789999
Q ss_pred EeCC-ChhHHHHHHHHHH----cCC--CcEEEcCCCCcChhhHH
Q 013422 212 LDKF-DGNSELVAELVTI----NGF--KNAYTIKDGAEGPRGWM 248 (443)
Q Consensus 212 ~C~s-G~RS~~AAk~L~k----~GF--knVy~L~GGieG~~gW~ 248 (443)
||.+ |.||..+++.|.+ .|| .++|+|.||+ .+|.
T Consensus 72 ~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~---~~w~ 112 (113)
T cd01443 72 YCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGI---KAWY 112 (113)
T ss_pred ECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChh---hhhc
Confidence 9997 5899888877654 465 7899999999 9995
No 36
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.54 E-value=1.1e-14 Score=115.80 Aligned_cols=88 Identities=22% Similarity=0.334 Sum_probs=71.3
Q ss_pred HHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCCChhHHHHH
Q 013422 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVA 223 (443)
Q Consensus 144 A~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~RS~~AA 223 (443)
+.++++ +++.++||+|++.||+. +|++ |++|+|+... .... .....+++++||+||.+|.++..++
T Consensus 2 ~~~~~~-~~~~~iiD~R~~~~~~~-~~i~------ga~~~~~~~~-----~~~~-~~~~~~~~~~vv~~c~~~~~a~~~~ 67 (89)
T cd00158 2 LKELLD-DEDAVLLDVREPEEYAA-GHIP------GAINIPLSEL-----EERA-ALLELDKDKPIVVYCRSGNRSARAA 67 (89)
T ss_pred hHHHhc-CCCeEEEECCCHHHHhc-cccC------CCEecchHHH-----hhHH-HhhccCCCCeEEEEeCCCchHHHHH
Confidence 455665 67899999999999997 6664 9999998531 1110 0113478899999999999999999
Q ss_pred HHHHHcCCCcEEEcCCCCcChhhHH
Q 013422 224 ELVTINGFKNAYTIKDGAEGPRGWM 248 (443)
Q Consensus 224 k~L~k~GFknVy~L~GGieG~~gW~ 248 (443)
..|++.||++++++.||+ .+|+
T Consensus 68 ~~l~~~G~~~v~~l~gG~---~~w~ 89 (89)
T cd00158 68 KLLRKAGGTNVYNLEGGM---LAWK 89 (89)
T ss_pred HHHHHhCcccEEEecCCh---hhcC
Confidence 999999999999999999 8884
No 37
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.51 E-value=4.8e-14 Score=145.61 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=84.9
Q ss_pred CcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCC
Q 013422 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (443)
Q Consensus 136 ~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~s 215 (443)
...|+++|+.++++++++.++||||++.||+. ||++ |++|||+.+.... ..+. +.+++++||+||++
T Consensus 286 ~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~-ghIp------GAinip~~~l~~~---~~~~---~l~~d~~iVvyC~~ 352 (392)
T PRK07878 286 GSTITPRELKEWLDSGKKIALIDVREPVEWDI-VHIP------GAQLIPKSEILSG---EALA---KLPQDRTIVLYCKT 352 (392)
T ss_pred CCccCHHHHHHHHhCCCCeEEEECCCHHHHhc-CCCC------CCEEcChHHhcch---hHHh---hCCCCCcEEEEcCC
Confidence 45699999999997555689999999999997 6664 9999998642111 1221 23678999999999
Q ss_pred ChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCc
Q 013422 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (443)
Q Consensus 216 G~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPv 254 (443)
|.||..++..|++.||++||++.||+ .+|++.+.+-
T Consensus 353 G~rS~~aa~~L~~~G~~~V~~L~GG~---~~W~~~~~~~ 388 (392)
T PRK07878 353 GVRSAEALAALKKAGFSDAVHLQGGV---VAWAKQVDPS 388 (392)
T ss_pred ChHHHHHHHHHHHcCCCcEEEecCcH---HHHHHhcCCC
Confidence 99999999999999999999999999 9999987663
No 38
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.50 E-value=5.6e-14 Score=119.91 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=65.8
Q ss_pred CCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCCChhHHHHHHHHHHcCC
Q 013422 152 ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGF 231 (443)
Q Consensus 152 ~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~RS~~AAk~L~k~GF 231 (443)
.+..+||||+++||.. ||++ |++|||+.+ +.+.+. .+..+++++||+||++|.||..++..|.++||
T Consensus 17 ~~~~lIDvR~~~ef~~-ghIp------gAinip~~~-----l~~~l~-~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~ 83 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQ-EHIQ------GAINIPLKE-----IKEHIA-TAVPDKNDTVKLYCNAGRQSGMAKDILLDMGY 83 (101)
T ss_pred cCCEEEECCCHHHHhc-CCCC------CCEECCHHH-----HHHHHH-HhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCC
Confidence 4578999999999997 6664 999999853 222232 12246788999999999999999999999999
Q ss_pred CcEEEcCCCCcChhhHHh
Q 013422 232 KNAYTIKDGAEGPRGWMN 249 (443)
Q Consensus 232 knVy~L~GGieG~~gW~~ 249 (443)
++++++ ||+ .+|.-
T Consensus 84 ~~v~~~-GG~---~~~~~ 97 (101)
T TIGR02981 84 THAENA-GGI---KDIAM 97 (101)
T ss_pred CeEEec-CCH---HHhhh
Confidence 999986 999 99964
No 39
>PRK07411 hypothetical protein; Validated
Probab=99.47 E-value=1.5e-13 Score=141.94 Aligned_cols=106 Identities=18% Similarity=0.199 Sum_probs=84.1
Q ss_pred CcccCHHHHHHHhcCCC-CceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeC
Q 013422 136 WGVESARNAYAKLGDDA-SAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDK 214 (443)
Q Consensus 136 ~g~ISa~eA~~LLn~~~-~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~ 214 (443)
...|+++|+.++++.++ +.++||||++.||+. ||++ |++|||+.+.......+++.. .+++++||+||+
T Consensus 281 ~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~-ghIp------GAiniP~~~l~~~~~~~~l~~---l~~d~~IVvyC~ 350 (390)
T PRK07411 281 IPEMTVTELKALLDSGADDFVLIDVRNPNEYEI-ARIP------GSVLVPLPDIENGPGVEKVKE---LLNGHRLIAHCK 350 (390)
T ss_pred cCccCHHHHHHHHhCCCCCeEEEECCCHHHhcc-CcCC------CCEEccHHHhhcccchHHHhh---cCCCCeEEEECC
Confidence 46799999999997443 689999999999997 6664 999999864211111223322 357899999999
Q ss_pred CChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCcc
Q 013422 215 FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWI 255 (443)
Q Consensus 215 sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPvv 255 (443)
+|.||..++..|+++||++ +++.||+ .+|.+...|-.
T Consensus 351 ~G~RS~~aa~~L~~~G~~~-~~l~GG~---~~W~~~~~p~~ 387 (390)
T PRK07411 351 MGGRSAKALGILKEAGIEG-TNVKGGI---TAWSREVDPSV 387 (390)
T ss_pred CCHHHHHHHHHHHHcCCCe-EEecchH---HHHHHhcCCCC
Confidence 9999999999999999985 6899999 99999877654
No 40
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.45 E-value=2.9e-13 Score=116.33 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=65.9
Q ss_pred CCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCCChhHHHHHHHHHHcC
Q 013422 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTING 230 (443)
Q Consensus 151 ~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~RS~~AAk~L~k~G 230 (443)
..+-++||||+++||+. ||++ |++|||+.+ +.+.+. .+..+++++||+||++|.||..++..|.++|
T Consensus 18 ~~~~~lIDvR~~~ef~~-ghIp------GAiniP~~~-----l~~~l~-~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G 84 (104)
T PRK10287 18 FAAEHWIDVRVPEQYQQ-EHVQ------GAINIPLKE-----VKERIA-TAVPDKNDTVKLYCNAGRQSGQAKEILSEMG 84 (104)
T ss_pred cCCCEEEECCCHHHHhc-CCCC------ccEECCHHH-----HHHHHH-hcCCCCCCeEEEEeCCChHHHHHHHHHHHcC
Confidence 34567999999999997 5654 999999843 323332 2234667899999999999999999999999
Q ss_pred CCcEEEcCCCCcChhhHHh
Q 013422 231 FKNAYTIKDGAEGPRGWMN 249 (443)
Q Consensus 231 FknVy~L~GGieG~~gW~~ 249 (443)
|+++++ .||+ .+|.-
T Consensus 85 ~~~v~~-~GG~---~~~~~ 99 (104)
T PRK10287 85 YTHAEN-AGGL---KDIAM 99 (104)
T ss_pred CCeEEe-cCCH---HHHhh
Confidence 999988 6999 89964
No 41
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.43 E-value=5.9e-13 Score=131.16 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=86.0
Q ss_pred ccCHHHHHHHhcCCCCceEEeeCC----------hhhhhhcCCCCCCCCCCCcEEeccCCCC-----------CchhHHH
Q 013422 138 VESARNAYAKLGDDASAQLLDIRA----------PVEFRQVGSPDVRGLGKRPVSIVYKGDD-----------KPGFLKK 196 (443)
Q Consensus 138 ~ISa~eA~~LLn~~~~avLIDVRt----------~~Efe~~Ghp~l~~~~kgAinIPl~~~~-----------~~~fl~e 196 (443)
.++++++.++++ +++.+|||+|+ +.+|.. ||++ ||+|+|+.... .++.+++
T Consensus 6 lvs~~~l~~~l~-~~~~~iiD~R~~~~~~~~~~~~~~y~~-GHIp------GA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (281)
T PRK11493 6 FVAADWLAEHID-DPEIQIIDARMAPPGQEDRDVAAEYRA-GHIP------GAVFFDIEALSDHTSPLPHMMPRPETFAV 77 (281)
T ss_pred ccCHHHHHHhcC-CCCeEEEEeeCCCCCccccchHHHHHh-CcCC------CCEEcCHHHhcCCCCCCCCCCCCHHHHHH
Confidence 489999999996 77899999997 788987 6665 99999874311 1111222
Q ss_pred HhhhcCCCCCCeEEEEeCCChh-HHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCC
Q 013422 197 LSLKFKEPENTTLFILDKFDGN-SELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (443)
Q Consensus 197 L~~~lk~~Kdk~IVV~C~sG~R-S~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~ 257 (443)
+-..+..+++++||+||.+|.+ +..+...|...||++|+++.||+ .+|+++|+|+...
T Consensus 78 ~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~---~~W~~~g~p~~~~ 136 (281)
T PRK11493 78 AMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGL---AGWQRDDLLLEEG 136 (281)
T ss_pred HHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCH---HHHHHcCCCccCC
Confidence 2233456889999999998875 56778889999999999999999 9999999998875
No 42
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.42 E-value=2.6e-13 Score=139.57 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=72.4
Q ss_pred ccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCc-hhHHHHhhhcCCCCCCeEEEEeCCC
Q 013422 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKP-GFLKKLSLKFKEPENTTLFILDKFD 216 (443)
Q Consensus 138 ~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~-~fl~eL~~~lk~~Kdk~IVV~C~sG 216 (443)
.++++|+.++++ ++++++||||+++||+. ||++- ..+++|||+.+.... .+.+.+ ...++++|||||++|
T Consensus 272 ~~~~~el~~~l~-~~~~~lIDVR~~~E~~~-ghI~~---~~gAinIPl~~l~~~~~~~~~l----~~~~~~~Ivv~C~sG 342 (370)
T PRK05600 272 RTDTTSLIDATL-NGSATLLDVREPHEVLL-KDLPE---GGASLKLPLSAITDDADILHAL----SPIDGDNVVVYCASG 342 (370)
T ss_pred ccCHHHHHHHHh-cCCeEEEECCCHHHhhh-ccCCC---CCccEeCcHHHhhcchhhhhhc----cccCCCcEEEECCCC
Confidence 478999999997 55689999999999997 66530 015999998642111 112222 122334999999999
Q ss_pred hhHHHHHHHHHHcCCCc-EEEcCCCC
Q 013422 217 GNSELVAELVTINGFKN-AYTIKDGA 241 (443)
Q Consensus 217 ~RS~~AAk~L~k~GFkn-Vy~L~GGi 241 (443)
.||..|++.|+++||++ ||+|.|||
T Consensus 343 ~RS~~Aa~~L~~~G~~~~v~~l~GG~ 368 (370)
T PRK05600 343 IRSADFIEKYSHLGHELTLHNLPGGV 368 (370)
T ss_pred hhHHHHHHHHHHcCCCCceEEecccc
Confidence 99999999999999996 99999999
No 43
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.41 E-value=4.8e-13 Score=131.76 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=83.5
Q ss_pred cCHHHHHHHhcCCCCceEEeeCChhhhh----------hcCCCCCCCCCCCcEEeccCCCCCc-hh--HHHHhhhc---C
Q 013422 139 ESARNAYAKLGDDASAQLLDIRAPVEFR----------QVGSPDVRGLGKRPVSIVYKGDDKP-GF--LKKLSLKF---K 202 (443)
Q Consensus 139 ISa~eA~~LLn~~~~avLIDVRt~~Efe----------~~Ghp~l~~~~kgAinIPl~~~~~~-~f--l~eL~~~l---k 202 (443)
.+.++....++ +++++|||+|+++||. ..|||+ ||+|+|+.+..++ .+ .++|+..+ .
T Consensus 155 ~~~~~v~~~~~-~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIp------gA~~i~~~~~~~~~~~~~~~~l~~~~~~~g 227 (281)
T PRK11493 155 VRLTDVLLASH-EKTAQIVDARPAARFNAEVDEPRPGLRRGHIP------GALNVPWTELVREGELKTTDELDAIFFGRG 227 (281)
T ss_pred ecHHHHHHhhc-CCCcEEEeCCCccceeeeccCCCCCcccccCC------CcCCCCHHHhcCCCCcCCHHHHHHHHHhcC
Confidence 34555555554 5678999999999995 136775 9999998652211 11 23343322 3
Q ss_pred CCCCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh-CCCCccCC
Q 013422 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN-SGLPWIPP 257 (443)
Q Consensus 203 ~~Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~-aGLPvv~~ 257 (443)
.+++++||+||++|.||..+...|..+||+||+++.||+ ..|.. .++|+.++
T Consensus 228 ~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~---~eW~~~~~~P~~~~ 280 (281)
T PRK11493 228 VSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAW---SEWGARADLPVEPA 280 (281)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCH---HHHccCCCCCcCCC
Confidence 467889999999999999999999999999999999999 99998 79999865
No 44
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.41 E-value=9e-13 Score=143.38 Aligned_cols=108 Identities=13% Similarity=0.191 Sum_probs=87.9
Q ss_pred ccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCC-----------CC-chhHHHHhhhcCCCC
Q 013422 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGD-----------DK-PGFLKKLSLKFKEPE 205 (443)
Q Consensus 138 ~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~-----------~~-~~fl~eL~~~lk~~K 205 (443)
.||++++.++++ +++.+|||||++.||.. ||++ ||+|++++.. .. ..+.+.+ .++..++
T Consensus 10 lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~-GHIP------GAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l-~~lGI~~ 80 (610)
T PRK09629 10 VIEPNDLLERLD-APELILVDLTSSARYEA-GHIR------GARFVDPKRTQLGKPPAPGLLPDTADLEQLF-GELGHNP 80 (610)
T ss_pred eecHHHHHHHhc-CCCEEEEECCChHHHHh-CCCC------CcEEcChhHhhccCCCCCCCCCCHHHHHHHH-HHcCCCC
Confidence 599999999997 67899999999999997 6665 9999987421 01 1222222 3445688
Q ss_pred CCeEEEEeCCC-hhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCC
Q 013422 206 NTTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (443)
Q Consensus 206 dk~IVV~C~sG-~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~ 257 (443)
+++|||||++| .++..++-.|+.+||++|++|.||+ .+|+.+|+|+...
T Consensus 81 d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~---~aW~~ag~p~~~~ 130 (610)
T PRK09629 81 DAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGV---LAWEAQALPLSTD 130 (610)
T ss_pred CCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCH---HHHHHcCCccccC
Confidence 99999999988 4788999999999999999999999 9999999998654
No 45
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.35 E-value=3.7e-12 Score=128.21 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=84.8
Q ss_pred cccCHHHHHHHhcCCCCceEEeeC--------C-hhhhhhcCCCCCCCCCCCcEEeccCCCC-----------C-chhHH
Q 013422 137 GVESARNAYAKLGDDASAQLLDIR--------A-PVEFRQVGSPDVRGLGKRPVSIVYKGDD-----------K-PGFLK 195 (443)
Q Consensus 137 g~ISa~eA~~LLn~~~~avLIDVR--------t-~~Efe~~Ghp~l~~~~kgAinIPl~~~~-----------~-~~fl~ 195 (443)
..|+++++.++++ +++.+|||+| + ..||.+ ||++ ||+|+++.+.. . ..|.+
T Consensus 22 ~lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~-gHIP------gAi~i~~~~~~~~~~~~~~~lp~~~~~~~ 93 (320)
T PLN02723 22 PVVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQV-AHIP------GALFFDLDGISDRTTDLPHMLPSEEAFAA 93 (320)
T ss_pred ceecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHh-ccCC------CCeecCHHHhcCCCCCcCCCCCCHHHHHH
Confidence 4699999999996 6789999996 3 378997 6665 99999864210 0 11222
Q ss_pred HHhhhcCCCCCCeEEEEeCCChh-HHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCC
Q 013422 196 KLSLKFKEPENTTLFILDKFDGN-SELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (443)
Q Consensus 196 eL~~~lk~~Kdk~IVV~C~sG~R-S~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~ 257 (443)
.+ ..+...++++|||||++|.+ +..+...|+.+||++|++|.||+ .+|+++|+|+.+.
T Consensus 94 ~l-~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~---~~W~~~G~pv~~~ 152 (320)
T PLN02723 94 AV-SALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGL---PKWRASGYDVESS 152 (320)
T ss_pred HH-HHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCH---HHHHHcCCCcccC
Confidence 22 23456788999999999975 46777889999999999999999 9999999999874
No 46
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.35 E-value=1.6e-12 Score=131.18 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=68.8
Q ss_pred CceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCC----------------------------chhHHHHhhhcCCC
Q 013422 153 SAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK----------------------------PGFLKKLSLKFKEP 204 (443)
Q Consensus 153 ~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~----------------------------~~fl~eL~~~lk~~ 204 (443)
+.+|||||++.||.+ ||++ ||+|||+...+. +.+++++.. ..+
T Consensus 2 ~~~liDVRsp~Ef~~-ghip------gAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~--~~~ 72 (311)
T TIGR03167 2 FDPLIDVRSPAEFAE-GHLP------GAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRA--FAD 72 (311)
T ss_pred CCEEEECCCHHHHhc-CCCc------CCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHh--hcC
Confidence 468999999999998 6664 999999953100 011111111 123
Q ss_pred CCCeEEEEe-CCChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccC
Q 013422 205 ENTTLFILD-KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIP 256 (443)
Q Consensus 205 Kdk~IVV~C-~sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~ 256 (443)
++++||+|| ++|.||..++.+|..+|| +|+++.||+ .+|+..+++...
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~---~aw~~~~~~~~~ 121 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGY---KAYRRFVIDQLE 121 (311)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChH---HHHHHhhhhhhh
Confidence 455699999 589999999999999999 699999999 999999987655
No 47
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.32 E-value=3.5e-12 Score=128.42 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=84.4
Q ss_pred cCHHHHHHHhcCCCCceEEeeCChhhhh----------hcCCCCCCCCCCCcEEeccCCCCCc--hh--HHHHhhhc---
Q 013422 139 ESARNAYAKLGDDASAQLLDIRAPVEFR----------QVGSPDVRGLGKRPVSIVYKGDDKP--GF--LKKLSLKF--- 201 (443)
Q Consensus 139 ISa~eA~~LLn~~~~avLIDVRt~~Efe----------~~Ghp~l~~~~kgAinIPl~~~~~~--~f--l~eL~~~l--- 201 (443)
++.+++.+.++ +++.+|||+|++.||. ..|||+ ||+|||+....+. .| .++|+..+
T Consensus 192 ~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIP------gAvnip~~~~~~~~~~~~~~~el~~~~~~~ 264 (320)
T PLN02723 192 WTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHIP------GSKCVPFPQMLDSSQTLLPAEELKKRFEQE 264 (320)
T ss_pred ecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcCC------CCcccCHHHhcCCCCCCCCHHHHHHHHHhc
Confidence 57888888885 5678999999999993 236775 9999998531110 01 12333222
Q ss_pred CCCCCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhC-CCCccCC
Q 013422 202 KEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNS-GLPWIPP 257 (443)
Q Consensus 202 k~~Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~a-GLPvv~~ 257 (443)
..+++++||+||.+|.||..+.-.|+.+||++|+++.||+ ..|... ++|+..+
T Consensus 265 gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~---~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 265 GISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSW---TEWGALPDTPVATS 318 (320)
T ss_pred CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCH---HHHhcCCCCCccCC
Confidence 3578999999999999999999999999999999999999 999876 6888764
No 48
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.32 E-value=2.3e-12 Score=131.67 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=74.0
Q ss_pred ccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCCCh
Q 013422 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (443)
Q Consensus 138 ~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~ 217 (443)
.++++++.++. ++.++||||+++||+. +|++ |++|||+.+. ..... ....+++++||+||++|.
T Consensus 262 ~i~~~~~~~~~---~~~~IIDVR~~~ef~~-ghIp------gAinip~~~l-----~~~~~-~~~~~~~~~IvvyC~~G~ 325 (355)
T PRK05597 262 VLDVPRVSALP---DGVTLIDVREPSEFAA-YSIP------GAHNVPLSAI-----REGAN-PPSVSAGDEVVVYCAAGV 325 (355)
T ss_pred ccCHHHHHhcc---CCCEEEECCCHHHHcc-CcCC------CCEEeCHHHh-----hhccc-cccCCCCCeEEEEcCCCH
Confidence 36677766443 4679999999999997 6664 9999998531 11111 011367899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhC
Q 013422 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMNS 250 (443)
Q Consensus 218 RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~a 250 (443)
||..++..|++.||++|+++.||+ .+|.++
T Consensus 326 rS~~Aa~~L~~~G~~nV~~L~GGi---~~W~~~ 355 (355)
T PRK05597 326 RSAQAVAILERAGYTGMSSLDGGI---EGWLDS 355 (355)
T ss_pred HHHHHHHHHHHcCCCCEEEecCcH---HHHhhC
Confidence 999999999999999999999999 999764
No 49
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.31 E-value=4e-12 Score=129.93 Aligned_cols=104 Identities=14% Similarity=0.225 Sum_probs=76.3
Q ss_pred CHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCC-------------------------chhH
Q 013422 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK-------------------------PGFL 194 (443)
Q Consensus 140 Sa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~-------------------------~~fl 194 (443)
...++.+++ .++.+|||||++.||.. ||++ ||+|+|+..... +.+.
T Consensus 4 ~~~~~~~~~--~~~~~lIDVRsp~Ef~~-ghIp------gAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~ 74 (345)
T PRK11784 4 DAQDFRALF--LNDTPLIDVRSPIEFAE-GHIP------GAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIA 74 (345)
T ss_pred cHHHHHHHH--hCCCEEEECCCHHHHhc-CCCC------CeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHH
Confidence 456666665 35789999999999998 6664 999999953100 0111
Q ss_pred HHHhhhcCC--CCCCeEEEEe-CCChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccC
Q 013422 195 KKLSLKFKE--PENTTLFILD-KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIP 256 (443)
Q Consensus 195 ~eL~~~lk~--~Kdk~IVV~C-~sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~ 256 (443)
+.+...+.. .++++||+|| ++|.||..++.+|..+|| +|++|.||+ .+|++.+++...
T Consensus 75 ~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~---~awr~~~~~~~~ 135 (345)
T PRK11784 75 AHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGY---KAYRRFVIDTLE 135 (345)
T ss_pred HHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCH---HHHHHhhHHHHh
Confidence 111111111 3789999999 588999999999999999 699999999 999998875443
No 50
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.31 E-value=8.2e-12 Score=109.23 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=75.7
Q ss_pred cCHHHHHHHhcCC-CCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCC----chhH--------HHHhhhcCCCC
Q 013422 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK----PGFL--------KKLSLKFKEPE 205 (443)
Q Consensus 139 ISa~eA~~LLn~~-~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~----~~fl--------~eL~~~lk~~K 205 (443)
|+++++.++++.+ ++.++||||++.||+. ||++ |++|+|+..... .... ++...++...+
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~-~hI~------~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSS-SHIR------GAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRGE 74 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhh-Cccc------CcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcCC
Confidence 7999999999743 5799999999999997 6664 999999863000 0000 01112222236
Q ss_pred CCeEEEEeCCChh---------HHHHHHHHHH--cCCCcEEEcCCCCcChhhHHh
Q 013422 206 NTTLFILDKFDGN---------SELVAELVTI--NGFKNAYTIKDGAEGPRGWMN 249 (443)
Q Consensus 206 dk~IVV~C~sG~R---------S~~AAk~L~k--~GFknVy~L~GGieG~~gW~~ 249 (443)
+++|||||.+|.+ +..+++.|.+ .|+.+|++|+||+ .+|++
T Consensus 75 ~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~---~~w~~ 126 (132)
T cd01446 75 SLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGF---EQFSS 126 (132)
T ss_pred CCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchH---HHHHh
Confidence 7899999999986 7888888988 5888999999999 99976
No 51
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.26 E-value=1.7e-11 Score=133.48 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=89.4
Q ss_pred ccCHHHHHHHhcCCCCceEEeeCChhhhh-------hcCCCCCCCCCCCcEEeccCCC-------CCchhHHHHhhhcCC
Q 013422 138 VESARNAYAKLGDDASAQLLDIRAPVEFR-------QVGSPDVRGLGKRPVSIVYKGD-------DKPGFLKKLSLKFKE 203 (443)
Q Consensus 138 ~ISa~eA~~LLn~~~~avLIDVRt~~Efe-------~~Ghp~l~~~~kgAinIPl~~~-------~~~~fl~eL~~~lk~ 203 (443)
.++.+++.+.++ +++.+|||+|+++||. +.|||+ ||+|||+... ..++-++++-..+..
T Consensus 148 ~v~~e~v~~~l~-~~~~~iIDaR~~~ef~G~~~~~~r~GHIP------GAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi 220 (610)
T PRK09629 148 TATREYLQSRLG-AADLAIWDARAPTEYSGEKVVAAKGGHIP------GAVNFEWTAGMDKARNLRIRQDMPEILRDLGI 220 (610)
T ss_pred cccHHHHHHhhC-CCCcEEEECCCccccCCcccccccCCCCC------CCeecCHHHhcCCCCCCCCHHHHHHHHHHcCC
Confidence 478889988886 6778999999999995 247775 9999998531 111112222223345
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhC-CCCccCCCCCc
Q 013422 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNS-GLPWIPPKKAL 261 (443)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~a-GLPvv~~~k~~ 261 (443)
+++++||+||.+|.||..+.-.|+.+||+||+++.||+ .+|.+. ++|+.+++...
T Consensus 221 ~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw---~eW~~~~~lPv~~~~~~~ 276 (610)
T PRK09629 221 TPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSW---GEWGNHPDTPVEVPTVAA 276 (610)
T ss_pred CCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCH---HHHhCCCCCccccCCCCc
Confidence 78999999999999999999999999999999999999 999885 79999876544
No 52
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.23 E-value=4.7e-11 Score=106.84 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=76.1
Q ss_pred cCHHHHHHHhcC---CCCceEEeeCCh--------hhhhhc-----------CCCCCCCCCCCcEEeccCCC---C----
Q 013422 139 ESARNAYAKLGD---DASAQLLDIRAP--------VEFRQV-----------GSPDVRGLGKRPVSIVYKGD---D---- 189 (443)
Q Consensus 139 ISa~eA~~LLn~---~~~avLIDVRt~--------~Efe~~-----------Ghp~l~~~~kgAinIPl~~~---~---- 189 (443)
+|++++.+.+++ +++.+|||+|.. .||... ||++ ||+++|+.+. .
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIP------gAv~~~~~~~~~~~~~~~ 74 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIP------GASFFDFEECLDEAGFEE 74 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCC------CCEeeCHHHhhCcCCCCC
Confidence 578899999863 467999999987 899851 5664 9999997421 0
Q ss_pred ----Cc-hhHHHHhhhcCCCCCCeEEEEeCC---ChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHH
Q 013422 190 ----KP-GFLKKLSLKFKEPENTTLFILDKF---DGNSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (443)
Q Consensus 190 ----~~-~fl~eL~~~lk~~Kdk~IVV~C~s---G~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~ 248 (443)
.. .|.+.+ ..+....+++||+||.+ |.++..+.=.|+.+|+++|+++.||+ .+|+
T Consensus 75 ~~~p~~~~~~~~~-~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~---~~W~ 137 (138)
T cd01445 75 SMEPSEAEFAAMF-EAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGF---FEWF 137 (138)
T ss_pred CCCCCHHHHHHHH-HHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCH---HHhh
Confidence 00 222222 23456789999999986 67888888889999999999999999 9995
No 53
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.99 E-value=1.2e-09 Score=115.93 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=63.7
Q ss_pred HHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCC----cEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCCCh
Q 013422 142 RNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKR----PVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (443)
Q Consensus 142 ~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kg----AinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~ 217 (443)
.+..+.+ .+++++||||+++||+. +|++ | ++|+|+.+ +...+. ..+++++||+||++|.
T Consensus 398 ~~~~~~~--~~~~~lIDVR~~~E~~~-~hI~------g~~~~a~niP~~~-----l~~~~~---~l~~~~~iivyC~~G~ 460 (482)
T PRK01269 398 VETVSEL--PPDDVIIDIRSPDEQED-KPLK------LEGVEVKSLPFYK-----LSTQFG---DLDQSKTYLLYCDRGV 460 (482)
T ss_pred hHHHHhc--CCCCEEEECCCHHHHhc-CCCC------CCCceEEECCHHH-----HHHHHh---hcCCCCeEEEECCCCH
Confidence 4444454 46789999999999997 6664 8 99999853 222222 1367889999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCC
Q 013422 218 NSELVAELVTINGFKNAYTIKD 239 (443)
Q Consensus 218 RS~~AAk~L~k~GFknVy~L~G 239 (443)
||..++..|+++||+||+++.+
T Consensus 461 rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 461 MSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred HHHHHHHHHHHcCCccEEecCC
Confidence 9999999999999999998753
No 54
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.90 E-value=4.5e-09 Score=105.33 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=83.4
Q ss_pred cCHHHHHHHhcCCCCceEEeeCChhhhhh---------cCCCCCCCCCCCcEEeccCCCCC-------chhHHHHhhhcC
Q 013422 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQ---------VGSPDVRGLGKRPVSIVYKGDDK-------PGFLKKLSLKFK 202 (443)
Q Consensus 139 ISa~eA~~LLn~~~~avLIDVRt~~Efe~---------~Ghp~l~~~~kgAinIPl~~~~~-------~~fl~eL~~~lk 202 (443)
.+..+....+. ....+|||+|+++||.. .|||+ ||+|||+.+..+ ++.++.+.+...
T Consensus 158 ~~~~~~~~~~~-~~~~~liDaR~~~rf~G~~~ep~~~~~GHIP------GAiNipw~~~~~~~~~~~~~~~~~~l~~~~g 230 (285)
T COG2897 158 VDATLVADALE-VPAVLLIDARSPERFRGKEPEPRDGKAGHIP------GAINIPWTDLVDDGGLFKSPEEIARLYADAG 230 (285)
T ss_pred CCHHHHHHHhc-CCCeEEEecCCHHHhCCCCCCCCCCCCCCCC------CCcCcCHHHHhcCCCccCcHHHHHHHHHhcC
Confidence 55666666664 67888999999999996 36775 999999864221 112222222224
Q ss_pred CCCCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhC-CCCccCC
Q 013422 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNS-GLPWIPP 257 (443)
Q Consensus 203 ~~Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~a-GLPvv~~ 257 (443)
.+.+++||+||.+|.||...--.|+..|+.++.++.|+. ..|-+. +.|+..+
T Consensus 231 i~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSW---sEWg~~~~~PV~~g 283 (285)
T COG2897 231 IDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSW---SEWGSDPDRPVETG 283 (285)
T ss_pred CCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChH---HHhhcCCCCccccC
Confidence 688999999999999999999999999999888999999 999887 4577764
No 55
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.74 E-value=7.4e-09 Score=105.74 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=79.4
Q ss_pred CcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCC
Q 013422 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (443)
Q Consensus 136 ~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~s 215 (443)
-.+||..+..+++.+++..+++|||++.||+..+.| .++|||+.+...... +++... .....++|+|+|+.
T Consensus 316 ~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP-------~avNIPL~~l~~~~~-~~~~~~-~~~~~~~I~ViCrr 386 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLP-------EAVNIPLKELRSRSG-KKLQGD-LNTESKDIFVICRR 386 (427)
T ss_pred hhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecc-------cccccchhhhhhhhh-hhhccc-ccccCCCEEEEeCC
Confidence 346999999999986789999999999999987777 799999975321111 222111 13456789999999
Q ss_pred ChhHHHHHHHHHHcCC-CcEEEcCCCCcChhhHHhC
Q 013422 216 DGNSELVAELVTINGF-KNAYTIKDGAEGPRGWMNS 250 (443)
Q Consensus 216 G~RS~~AAk~L~k~GF-knVy~L~GGieG~~gW~~a 250 (443)
|+.|..|++.|++.++ .+|..+.||+ .+|...
T Consensus 387 GNdSQ~Av~~Lre~~~~~~vrDvigGl---~~w~~~ 419 (427)
T KOG2017|consen 387 GNDSQRAVRILREKFPDSSVRDVIGGL---KAWAAK 419 (427)
T ss_pred CCchHHHHHHHHhhCCchhhhhhhhHH---HHHHHh
Confidence 9999999999997654 4677788888 999865
No 56
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.59 E-value=2.4e-07 Score=93.02 Aligned_cols=109 Identities=19% Similarity=0.214 Sum_probs=82.6
Q ss_pred cccCHHHHHHHhcCCC-----CceEEeeCCh--hhhhhcCCCCCCCCCCCcEEeccCC-----------CCCchhHHHHh
Q 013422 137 GVESARNAYAKLGDDA-----SAQLLDIRAP--VEFRQVGSPDVRGLGKRPVSIVYKG-----------DDKPGFLKKLS 198 (443)
Q Consensus 137 g~ISa~eA~~LLn~~~-----~avLIDVRt~--~Efe~~Ghp~l~~~~kgAinIPl~~-----------~~~~~fl~eL~ 198 (443)
-.|+++-+.+.+. ++ +..+++++.. .+|.+ +||+ ||+.++++. +..++...++-
T Consensus 11 ~lVs~~wl~~~l~-~~~~~~~d~~~~~~~~~~~~~Y~~-~HIP------GAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~ 82 (285)
T COG2897 11 FLVSPDWLAENLD-DPAVVIVDARIILPDPDDAEEYLE-GHIP------GAVFFDWEADLSDPVPLPHMLPSPEQFAKLL 82 (285)
T ss_pred eEEcHHHHHhhcc-ccccccCceEEEeCCcchHHHHHh-ccCC------CCEecCHHHhhcCCCCCCCCCCCHHHHHHHH
Confidence 3588888888885 44 6777777766 88887 5554 999998753 11122223333
Q ss_pred hhcCCCCCCeEEEEeCCCh-hHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccC
Q 013422 199 LKFKEPENTTLFILDKFDG-NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIP 256 (443)
Q Consensus 199 ~~lk~~Kdk~IVV~C~sG~-RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~ 256 (443)
.++....|++||+|+..|+ .+..+.=.|+-+|.+||++|.||+ .+|+++|+|+..
T Consensus 83 ~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~---~~W~~~g~p~~~ 138 (285)
T COG2897 83 GELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGL---PAWKAAGLPLET 138 (285)
T ss_pred HHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCH---HHHHHcCCCccC
Confidence 3456788999999997765 577888889999999999999999 999999999885
No 57
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=98.34 E-value=4.7e-07 Score=98.40 Aligned_cols=40 Identities=50% Similarity=0.796 Sum_probs=33.1
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013422 404 NSVPKTEVKADSLPRFQRSLSPYPAYPDLKPPTSPTPSQP 443 (443)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (443)
.+.+..+..+......+||||||++|+||||||||+|++|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (576)
T PLN03209 352 PSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPP 391 (576)
T ss_pred CCCcccccCCCCcCCCCCCCCCccccccCCCCCCCCCCCC
Confidence 4455555555666789999999999999999999999986
No 58
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=98.32 E-value=9e-07 Score=96.29 Aligned_cols=28 Identities=57% Similarity=1.046 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013422 416 LPRFQRSLSPYPAYPDLKPPTSPTPSQP 443 (443)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (443)
..+..||||||+.||||||||||+|++|
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (576)
T PLN03209 431 EAKKTRPLSPYARYEDLKPPTSPSPTAP 458 (576)
T ss_pred ccCCCCCCCcccccccCCCCCCCCCCCC
Confidence 3558999999999999999999999984
No 59
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=1.1e-05 Score=82.14 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=75.9
Q ss_pred CCCcccCHHHHHHHhcCC-----CCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcC-CCCCC
Q 013422 134 KSWGVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFK-EPENT 207 (443)
Q Consensus 134 ~~~g~ISa~eA~~LLn~~-----~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk-~~Kdk 207 (443)
..++.||++++..++.+. ..+++||+|-|.||.. |||. |++||+..++..+-|...- ... ..+..
T Consensus 153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~G-GHIk------gavnl~~~~~~~~~f~~~~--~~~~~~~~~ 223 (325)
T KOG3772|consen 153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEG-GHIK------GAVNLYSKELLQDFFLLKD--GVPSGSKRV 223 (325)
T ss_pred ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccC-cccc------cceecccHhhhhhhhcccc--ccccccCce
Confidence 357789999999999631 2377999999999995 8884 9999987542111111100 001 13456
Q ss_pred eEEEEeCCC-hhHHHHHHHHHH------------cCCCcEEEcCCCCcChhhHHhC
Q 013422 208 TLFILDKFD-GNSELVAELVTI------------NGFKNAYTIKDGAEGPRGWMNS 250 (443)
Q Consensus 208 ~IVV~C~sG-~RS~~AAk~L~k------------~GFknVy~L~GGieG~~gW~~a 250 (443)
.+|++|... .|.-++|+.|+. .-|..+|+|.||+ ..|-..
T Consensus 224 i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGY---k~ff~~ 276 (325)
T KOG3772|consen 224 ILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGY---KEFFSN 276 (325)
T ss_pred eEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccH---HHHHHh
Confidence 899999987 489999999983 4567899999999 888765
No 60
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=97.60 E-value=0.00038 Score=70.06 Aligned_cols=109 Identities=18% Similarity=0.226 Sum_probs=78.9
Q ss_pred ccCHHHHHHHhcCCCCceEEeeC---------ChhhhhhcCCCCCCCCCCCcEEeccCCCC-----------C-chhHHH
Q 013422 138 VESARNAYAKLGDDASAQLLDIR---------APVEFRQVGSPDVRGLGKRPVSIVYKGDD-----------K-PGFLKK 196 (443)
Q Consensus 138 ~ISa~eA~~LLn~~~~avLIDVR---------t~~Efe~~Ghp~l~~~~kgAinIPl~~~~-----------~-~~fl~e 196 (443)
.++++=+.+++. ++..++||-- ...||...|+| |+.++-++... . +.|.+
T Consensus 6 iv~~~~v~~~~~-~~~~~iLDaSw~~~~~~~~~~~e~~~~hip-------ga~~fdld~~~~~s~~~~~~lp~~e~Fa~- 76 (286)
T KOG1529|consen 6 IVSVKWVMENLG-NHGLRILDASWYFPPLRRIAEFEFLERHIP-------GASHFDLDIISYPSSPYRHMLPTAEHFAE- 76 (286)
T ss_pred ccChHHHHHhCc-CCCeEEEeeeeecCchhhhhhhhhhhccCC-------CceeeeccccccCCCcccccCccHHHHHH-
Confidence 466777777775 5778889853 34577765555 88888776310 1 11222
Q ss_pred HhhhcCCCCCCeEEEEeC--CCh-hHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCCC
Q 013422 197 LSLKFKEPENTTLFILDK--FDG-NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (443)
Q Consensus 197 L~~~lk~~Kdk~IVV~C~--sG~-RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~~ 258 (443)
...++..+.++.+|||++ .|+ .|.++.=.++-.|+++|+.|.||+ ++|+..|+|+....
T Consensus 77 y~~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~---~~Wk~~g~~~~s~~ 138 (286)
T KOG1529|consen 77 YASRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGF---RAWKAAGGPVDSSK 138 (286)
T ss_pred HHHhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcH---HHHHHcCCcccccc
Confidence 223456778899999999 776 456666678999999999999999 99999999988754
No 61
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=96.57 E-value=0.0048 Score=62.29 Aligned_cols=89 Identities=17% Similarity=0.211 Sum_probs=65.9
Q ss_pred CCCceEEeeCChhhhhhc----------CCCCCCCCCCCcEEeccCCC-CCchh---HHHHhhhc---CCCCCCeEEEEe
Q 013422 151 DASAQLLDIRAPVEFRQV----------GSPDVRGLGKRPVSIVYKGD-DKPGF---LKKLSLKF---KEPENTTLFILD 213 (443)
Q Consensus 151 ~~~avLIDVRt~~Efe~~----------Ghp~l~~~~kgAinIPl~~~-~~~~f---l~eL~~~l---k~~Kdk~IVV~C 213 (443)
..++..||-|+..+|... ||+ +|++|+|+.+. ..+.+ .+++...+ +...++|+|+.|
T Consensus 170 ~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHI------pGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC 243 (286)
T KOG1529|consen 170 TKNFQYLDARSKGRFDGTEPEPRSGATGGHI------PGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSC 243 (286)
T ss_pred cccceeeeccccccccccCCCCcccCcCccC------CCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEee
Confidence 356999999999999743 344 49999998741 11111 12333222 234579999999
Q ss_pred CCChhHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013422 214 KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (443)
Q Consensus 214 ~sG~RS~~AAk~L~k~GFknVy~L~GGieG~~gW~~ 249 (443)
..|..+...+-.|...| .++..+.|++ ..|..
T Consensus 244 ~~Gisa~~i~~al~r~g-~~~~lYdGS~---~Ew~~ 275 (286)
T KOG1529|consen 244 GTGISASIIALALERSG-PDAKLYDGSW---TEWAL 275 (286)
T ss_pred ccchhHHHHHHHHHhcC-CCcceecccH---HHHhh
Confidence 99999999999999999 7888899998 88875
No 62
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=95.75 E-value=0.047 Score=48.83 Aligned_cols=87 Identities=10% Similarity=0.028 Sum_probs=52.4
Q ss_pred CcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCC---C----CCCCCcEEeccCCC-CCchhHHHHhhhcCCCCCC
Q 013422 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV---R----GLGKRPVSIVYKGD-DKPGFLKKLSLKFKEPENT 207 (443)
Q Consensus 136 ~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l---~----~~~kgAinIPl~~~-~~~~fl~eL~~~lk~~Kdk 207 (443)
.+.+++++...+-. -+=-.+||.|+..|.+ +.|.. + ...-.-++||+... ..+.-+..+...+. ..++
T Consensus 12 s~qlt~~d~~~L~~-~GiktVIdlR~~~E~~--~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~-~~~~ 87 (135)
T TIGR01244 12 SPQLTKADAAQAAQ-LGFKTVINNRPDREEE--SQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAIG-AAEG 87 (135)
T ss_pred cCCCCHHHHHHHHH-CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHHH-hCCC
Confidence 35789999876653 4456799999988754 22210 0 01124678887531 12223333332232 2368
Q ss_pred eEEEEeCCChhHHHHHHHH
Q 013422 208 TLFILDKFDGNSELVAELV 226 (443)
Q Consensus 208 ~IVV~C~sG~RS~~AAk~L 226 (443)
||+++|++|.|+..+..++
T Consensus 88 pvL~HC~sG~Rt~~l~al~ 106 (135)
T TIGR01244 88 PVLAYCRSGTRSSLLWGFR 106 (135)
T ss_pred CEEEEcCCChHHHHHHHHH
Confidence 9999999999988776543
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=95.42 E-value=0.053 Score=47.49 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=41.1
Q ss_pred CcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCC-------CCCCCCcEEeccCCC-CCchhHHHHhhhcCCCCCC
Q 013422 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV-------RGLGKRPVSIVYKGD-DKPGFLKKLSLKFKEPENT 207 (443)
Q Consensus 136 ~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l-------~~~~kgAinIPl~~~-~~~~fl~eL~~~lk~~Kdk 207 (443)
.+.++++++.++-. .+=-.+|+.|+..|=. +.|.. ..++-.-+|||+... .....+..+...+. ...+
T Consensus 12 s~Q~~~~d~~~la~-~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~-~~~~ 87 (110)
T PF04273_consen 12 SGQPSPEDLAQLAA-QGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE-SLPK 87 (110)
T ss_dssp ECS--HHHHHHHHH-CT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH-TTTT
T ss_pred CCCCCHHHHHHHHH-CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH-hCCC
Confidence 45799999887775 4556799999886532 11110 011224788998641 12223333332232 2357
Q ss_pred eEEEEeCCChhHHHHHH
Q 013422 208 TLFILDKFDGNSELVAE 224 (443)
Q Consensus 208 ~IVV~C~sG~RS~~AAk 224 (443)
||+++|++|.||...-.
T Consensus 88 Pvl~hC~sG~Ra~~l~~ 104 (110)
T PF04273_consen 88 PVLAHCRSGTRASALWA 104 (110)
T ss_dssp SEEEE-SCSHHHHHHHH
T ss_pred CEEEECCCChhHHHHHH
Confidence 99999999999875543
No 64
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=95.23 E-value=0.018 Score=59.33 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=70.4
Q ss_pred CCCcccCHHHHHHHhcCC--C---CceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCe
Q 013422 134 KSWGVESARNAYAKLGDD--A---SAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTT 208 (443)
Q Consensus 134 ~~~g~ISa~eA~~LLn~~--~---~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~ 208 (443)
...+.||++.+..++... . +-++||.|=+.||.. |||. +++||--.+ +....+..+ ..---+-
T Consensus 239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~G-GHIi------naVNi~s~~----~l~~~F~hk-plThp~a 306 (427)
T COG5105 239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRG-GHII------NAVNISSTK----KLGLLFRHK-PLTHPRA 306 (427)
T ss_pred cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecC-ceee------eeeecchHH----HHHHHHHhc-cccCcee
Confidence 357789999999988531 1 356999999999995 7775 899987432 111122110 0112467
Q ss_pred EEEEeCCC-hhHHHHHHHHHHc------------CCCcEEEcCCCCcChhhHHhC
Q 013422 209 LFILDKFD-GNSELVAELVTIN------------GFKNAYTIKDGAEGPRGWMNS 250 (443)
Q Consensus 209 IVV~C~sG-~RS~~AAk~L~k~------------GFknVy~L~GGieG~~gW~~a 250 (443)
+|+.|... .|+-..|.-|+.. -|..||+|.||+ +.+-..
T Consensus 307 LifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGY---k~fy~n 358 (427)
T COG5105 307 LIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGY---KKFYSN 358 (427)
T ss_pred EEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcH---HHHhhc
Confidence 99999876 5888888888743 356899999999 776543
No 65
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=94.60 E-value=0.096 Score=44.56 Aligned_cols=39 Identities=28% Similarity=0.501 Sum_probs=35.7
Q ss_pred HHHHHHHHhHHHHHHHHHhhhcchhhHHHHHHHHHHHhh
Q 013422 303 IETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLN 341 (443)
Q Consensus 303 ~e~~lq~~gt~al~~~l~~kl~~~~~rk~t~~~~~~~~~ 341 (443)
+..++|++|..-.+.|.+|.|+++++|+...++++++-+
T Consensus 48 l~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i~~~k~ 86 (90)
T PF14159_consen 48 LPGLLELVGLGYTGWFVYRYLLFAENRQELLQKIQSLKK 86 (90)
T ss_pred hHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHHHHHHH
Confidence 566899999999999999999999999999999998743
No 66
>PLN02777 photosystem I P subunit (PSI-P)
Probab=90.33 E-value=0.39 Score=45.26 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=35.3
Q ss_pred HHHHHHHhHHHHHHHHHhhhcchhhHHHHHHHHHHHhhc
Q 013422 304 ETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNT 342 (443)
Q Consensus 304 e~~lq~~gt~al~~~l~~kl~~~~~rk~t~~~~~~~~~~ 342 (443)
-.+||++|..=.+.|.+|.|+|.++|+.-+++|+++.++
T Consensus 124 P~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~lk~~ 162 (167)
T PLN02777 124 PGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTYKE 162 (167)
T ss_pred cchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999998543
No 67
>COG2603 Predicted ATPase [General function prediction only]
Probab=87.65 E-value=0.7 Score=47.46 Aligned_cols=82 Identities=23% Similarity=0.330 Sum_probs=50.1
Q ss_pred CCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCC----------C--chhH---------HHHhh-hc----CCCC
Q 013422 152 ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDD----------K--PGFL---------KKLSL-KF----KEPE 205 (443)
Q Consensus 152 ~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~----------~--~~fl---------~eL~~-~l----k~~K 205 (443)
.+..+||||.|.||..++.| +++|.|.-..+ . .... .++.. ++ .-..
T Consensus 14 ~~~~lid~rap~ef~~g~~~-------ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~e 86 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMP-------IAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQE 86 (334)
T ss_pred cCCceeeccchHHHhcccch-------hhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 46789999999999984444 78898864200 0 0000 01110 00 1122
Q ss_pred CCeEEEEeCCC-hhHHHHHHHH-HHcCCCcEEEcCCCC
Q 013422 206 NTTLFILDKFD-GNSELVAELV-TINGFKNAYTIKDGA 241 (443)
Q Consensus 206 dk~IVV~C~sG-~RS~~AAk~L-~k~GFknVy~L~GGi 241 (443)
+.++-++|..| .||...+++| ...|+. +--+.||.
T Consensus 87 ~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGe 123 (334)
T COG2603 87 ENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGE 123 (334)
T ss_pred hCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchH
Confidence 34555557666 5999999999 778885 34567887
No 68
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=87.54 E-value=1.8 Score=37.33 Aligned_cols=72 Identities=6% Similarity=0.002 Sum_probs=40.5
Q ss_pred CCCceEEeeCChhhhhh--cCCCCCCCCCCCcEEeccCCCCCchh---H----HHHhhhcCCCCCCeEEEEeCCCh-hHH
Q 013422 151 DASAQLLDIRAPVEFRQ--VGSPDVRGLGKRPVSIVYKGDDKPGF---L----KKLSLKFKEPENTTLFILDKFDG-NSE 220 (443)
Q Consensus 151 ~~~avLIDVRt~~Efe~--~Ghp~l~~~~kgAinIPl~~~~~~~f---l----~eL~~~lk~~Kdk~IVV~C~sG~-RS~ 220 (443)
.+-..+||+|+..++.. .+.. .-.++|+.+...... + +.+... ...+++|+|+|..|. ||.
T Consensus 26 ~gi~~VI~l~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~i~~~--~~~~~~vlVHC~~G~~Rs~ 96 (139)
T cd00127 26 LGITHVLNVAKEVPNENLFLSDF-------NYLYVPILDLPSQDISKYFDEAVDFIDDA--REKGGKVLVHCLAGVSRSA 96 (139)
T ss_pred cCCCEEEEcccCCCCcccCCCCc-------eEEEEEceeCCCCChHHHHHHHHHHHHHH--HhcCCcEEEECCCCCchhH
Confidence 44568999999988611 1222 467788764221111 1 112111 234679999999996 887
Q ss_pred HH-HHHH-HHcCC
Q 013422 221 LV-AELV-TINGF 231 (443)
Q Consensus 221 ~A-Ak~L-~k~GF 231 (443)
.+ +..| ...|+
T Consensus 97 ~~~~~~l~~~~~~ 109 (139)
T cd00127 97 TLVIAYLMKTLGL 109 (139)
T ss_pred HHHHHHHHHHcCC
Confidence 44 3333 44443
No 69
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=86.62 E-value=3 Score=36.32 Aligned_cols=74 Identities=5% Similarity=0.011 Sum_probs=41.3
Q ss_pred CCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHH---HHhhhc--CCCCCCeEEEEeCCCh-hHHH-HH
Q 013422 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLK---KLSLKF--KEPENTTLFILDKFDG-NSEL-VA 223 (443)
Q Consensus 151 ~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~---eL~~~l--k~~Kdk~IVV~C~sG~-RS~~-AA 223 (443)
.+=..+||++...+....... .-+++|+.+.......+ +....+ ....+++|+|.|..|. ||.. ++
T Consensus 25 ~gi~~Vi~l~~~~~~~~~~~~-------~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 97 (138)
T smart00195 25 LGITHVINVTNEVPNLNKKGF-------TYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLII 97 (138)
T ss_pred cCCCEEEEccCCCCCCCCCCC-------EEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHH
Confidence 344679999987654221112 46788876521112222 111111 1356789999999995 8765 33
Q ss_pred H-HHHHcCC
Q 013422 224 E-LVTINGF 231 (443)
Q Consensus 224 k-~L~k~GF 231 (443)
. .+...|+
T Consensus 98 ~yl~~~~~~ 106 (138)
T smart00195 98 AYLMKYRNL 106 (138)
T ss_pred HHHHHHhCC
Confidence 3 4555665
No 70
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=81.18 E-value=6.5 Score=35.80 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=41.8
Q ss_pred CCcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCc----------------hhH----
Q 013422 135 SWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKP----------------GFL---- 194 (443)
Q Consensus 135 ~~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~----------------~fl---- 194 (443)
....+|.++...+.. -+=-.+||.|++.|.+....+... .-..+++|+...... .++
T Consensus 26 ~l~~lt~~d~~~L~~-lgI~tIiDLRs~~E~~~~p~~~~~--g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 102 (164)
T PF13350_consen 26 NLSNLTEADLERLRE-LGIRTIIDLRSPTERERAPDPLID--GVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFY 102 (164)
T ss_dssp --TT--HHHHHHHHH-TT--EEEE-S-HHHHHHHS----T--T-EEEE--SS-S-TTH----------HHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHh-CCCCEEEECCCccccccCCCCCcC--CceeeeecccccccccccccccccccccchhhHHHHHH
Confidence 456689998877763 455789999999999874222111 123566776531100 000
Q ss_pred --------HHHh---hhcCCCCCCeEEEEeCCCh-hHHHHHHHH-HHcCCC
Q 013422 195 --------KKLS---LKFKEPENTTLFILDKFDG-NSELVAELV-TINGFK 232 (443)
Q Consensus 195 --------~eL~---~~lk~~Kdk~IVV~C~sG~-RS~~AAk~L-~k~GFk 232 (443)
+.+. ..+.... .++++.|..|. |...++.+| .-+|..
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 103 REMLESYAEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHGGGSTHHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred HHHHHhhhHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 0111 1122233 69999999995 766666555 445754
No 71
>PLN02727 NAD kinase
Probab=78.08 E-value=7 Score=45.79 Aligned_cols=89 Identities=11% Similarity=0.052 Sum_probs=53.1
Q ss_pred CcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCC------CCCCCCcEEeccCC--CCCchhHHHHhhhcCCCCCC
Q 013422 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV------RGLGKRPVSIVYKG--DDKPGFLKKLSLKFKEPENT 207 (443)
Q Consensus 136 ~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l------~~~~kgAinIPl~~--~~~~~fl~eL~~~lk~~Kdk 207 (443)
.+.++++++..+.. .+=-.||+.|...|-. +.... +.++-.-+|||+.. ....+.++++.+.+...-.+
T Consensus 266 sgQpspe~la~LA~-~GfKTIINLRpd~E~~--q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpk 342 (986)
T PLN02727 266 GGQVTEEGLKWLLE-KGFKTIVDLRAEIVKD--NFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKK 342 (986)
T ss_pred eCCCCHHHHHHHHH-CCCeEEEECCCCCcCC--CchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 46799999877764 4445699999988721 11100 00122578899843 11233444444333223468
Q ss_pred eEEEEeCCChh-H-HHHHHHHH
Q 013422 208 TLFILDKFDGN-S-ELVAELVT 227 (443)
Q Consensus 208 ~IVV~C~sG~R-S-~~AAk~L~ 227 (443)
||+++|++|.| + ..+|.+|.
T Consensus 343 PVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 343 PIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred CEEEECCCCCchHHHHHHHHHH
Confidence 99999999994 3 35566665
No 72
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.42 E-value=16 Score=33.29 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=47.8
Q ss_pred CcccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCC-------CCCCCcEEeccCCC-----CCchhHHHHhhhcCC
Q 013422 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVR-------GLGKRPVSIVYKGD-----DKPGFLKKLSLKFKE 203 (443)
Q Consensus 136 ~g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~-------~~~kgAinIPl~~~-----~~~~fl~eL~~~lk~ 203 (443)
.+.|+++++.++-. ..=..+|--|+..|=. +-|... .+.-.-.+||.... +-..|.+.+.
T Consensus 13 sgQi~~~D~~~iaa-~GFksiI~nRPDgEe~--~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~----- 84 (130)
T COG3453 13 SGQISPADIASIAA-LGFKSIICNRPDGEEP--GQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALD----- 84 (130)
T ss_pred cCCCCHHHHHHHHH-hccceecccCCCCCCC--CCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHH-----
Confidence 46799999877764 3335578888776632 444210 01223567887641 1123444443
Q ss_pred CCCCeEEEEeCCChhHHHH
Q 013422 204 PENTTLFILDKFDGNSELV 222 (443)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~A 222 (443)
.-+.||+-||++|.||...
T Consensus 85 eaegPVlayCrsGtRs~~l 103 (130)
T COG3453 85 EAEGPVLAYCRSGTRSLNL 103 (130)
T ss_pred HhCCCEEeeecCCchHHHH
Confidence 2368999999999999754
No 73
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=61.56 E-value=9.2 Score=34.80 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=24.8
Q ss_pred CCCCeEEEEeCC-----ChhHHHHHHHHHHcCCCcEEEcCCCCc
Q 013422 204 PENTTLFILDKF-----DGNSELVAELVTINGFKNAYTIKDGAE 242 (443)
Q Consensus 204 ~Kdk~IVV~C~s-----G~RS~~AAk~L~k~GFknVy~L~GGie 242 (443)
.++..++++|-. |..-...++.|+++|..++.+|+||-+
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgS 141 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGS 141 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcc
Confidence 455566666644 577888999999999999999999984
No 74
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=60.54 E-value=3 Score=46.48 Aligned_cols=92 Identities=16% Similarity=0.120 Sum_probs=58.6
Q ss_pred cccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHh--hhcCCCCCCeEEEEeC
Q 013422 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLS--LKFKEPENTTLFILDK 214 (443)
Q Consensus 137 g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~--~~lk~~Kdk~IVV~C~ 214 (443)
.+|++++...+ +...++|.|...||.+ +|.. +++|||.+- .+.-++.+. ......+++.++++-.
T Consensus 622 prmsAedl~~~----~~l~v~d~r~~~ef~r-~~~s------~s~nip~~~--~ea~l~~~~~l~~~~~~~~~~~v~~~~ 688 (725)
T KOG1093|consen 622 PRISAEDLIWL----KMLYVLDTRQESEFQR-EHFS------DSINIPFNN--HEADLDWLRFLPGIVCSEGKKCVVVGK 688 (725)
T ss_pred ccccHHHHHHH----HHHHHHhHHHHHHHHH-hhcc------ccccCCccc--hHHHHHHhhcchHhHHhhCCeEEEecc
Confidence 34666665444 4578999999999998 5543 799999862 112222221 0011235666676666
Q ss_pred CChhHHHHHHHHHHcCCCcEEEcCCCC
Q 013422 215 FDGNSELVAELVTINGFKNAYTIKDGA 241 (443)
Q Consensus 215 sG~RS~~AAk~L~k~GFknVy~L~GGi 241 (443)
....+......+..+-|-+...+.+|+
T Consensus 689 ~~K~~~e~~~~~~~mk~p~~cil~~~~ 715 (725)
T KOG1093|consen 689 NDKHAAERLTELYVMKVPRICILHDGF 715 (725)
T ss_pred chHHHHHHhhHHHHhcccHHHHHHHHH
Confidence 666666666777777777777888888
No 75
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=56.66 E-value=29 Score=30.43 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=36.6
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHcCCCcEEEcCCCCcCh-------hhHHhCCCCcc
Q 013422 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGAEGP-------RGWMNSGLPWI 255 (443)
Q Consensus 207 k~IVV~C~sG-~RS~~AAk~L~k~GFknVy~L~GGieG~-------~gW~~aGLPvv 255 (443)
++|+++|... .||..|..+|++.+-.++.+...|+++. ...++.|+++.
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~~~~~p~a~~~l~e~Gid~~ 57 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEVSRVHPTAIEVMSEIGIDIS 57 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCCCCCCHHHHHHHHHhCCCcc
Confidence 3699999655 5899999999987655677788888543 45666777764
No 76
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=56.65 E-value=11 Score=32.99 Aligned_cols=34 Identities=9% Similarity=-0.020 Sum_probs=28.8
Q ss_pred EEEEeCCC-hhHHHHHHHHHHc----CCCcEEEcCCCCc
Q 013422 209 LFILDKFD-GNSELVAELVTIN----GFKNAYTIKDGAE 242 (443)
Q Consensus 209 IVV~C~sG-~RS~~AAk~L~k~----GFknVy~L~GGie 242 (443)
|+++|..+ .||..|..+|++. +-.++.+...|+.
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~ 39 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTE 39 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESS
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeec
Confidence 68999986 5899999988888 6778899999994
No 77
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=55.90 E-value=67 Score=29.82 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=19.3
Q ss_pred CCCCeEEEEeCCCh-hHHH-HHHHHHHcC
Q 013422 204 PENTTLFILDKFDG-NSEL-VAELVTING 230 (443)
Q Consensus 204 ~Kdk~IVV~C~sG~-RS~~-AAk~L~k~G 230 (443)
.++.+|+|.|..|. ||.. ++..|.+.|
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEYG 124 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhC
Confidence 45889999999994 7765 455555543
No 78
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=54.11 E-value=31 Score=32.89 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=36.5
Q ss_pred CCCceEEeeCChhhhhhcCCCCCCC----CCCCcEEeccCCCCCch------hHHHHhhhcCCCCCCeEEEEeCCC-hhH
Q 013422 151 DASAQLLDIRAPVEFRQVGSPDVRG----LGKRPVSIVYKGDDKPG------FLKKLSLKFKEPENTTLFILDKFD-GNS 219 (443)
Q Consensus 151 ~~~avLIDVRt~~Efe~~Ghp~l~~----~~kgAinIPl~~~~~~~------fl~eL~~~lk~~Kdk~IVV~C~sG-~RS 219 (443)
..-..+|=.-+..|+...+++.+.. ..-.-+|+|+.+..-++ +.++|...+ ..+++|+|.|+.| +|+
T Consensus 70 ~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L--~~g~~V~vHC~GGlGRt 147 (168)
T PF05706_consen 70 WGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARL--ENGRKVLVHCRGGLGRT 147 (168)
T ss_dssp TT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHH--HTT--EEEE-SSSSSHH
T ss_pred CCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHH--HcCCEEEEECCCCCCHH
Confidence 3334455578888888878775411 12235678876522222 223443333 3478999999999 477
Q ss_pred HH-HHHHHHHcC
Q 013422 220 EL-VAELVTING 230 (443)
Q Consensus 220 ~~-AAk~L~k~G 230 (443)
.. ||.+|...|
T Consensus 148 GlvAAcLLl~L~ 159 (168)
T PF05706_consen 148 GLVAACLLLELG 159 (168)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHc
Confidence 65 667777765
No 79
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=53.24 E-value=16 Score=30.96 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=24.2
Q ss_pred CCeEEEEeCCChhHHHHHHHHH----HcCCCcEEEcCCCC
Q 013422 206 NTTLFILDKFDGNSELVAELVT----INGFKNAYTIKDGA 241 (443)
Q Consensus 206 dk~IVV~C~sG~RS~~AAk~L~----k~GFknVy~L~GGi 241 (443)
.++|+++|.+|..|..+++.++ +.|++ +.+-..++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~ 41 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSY 41 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecH
Confidence 4689999999998777766654 56774 44444444
No 80
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=53.21 E-value=15 Score=31.46 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=38.9
Q ss_pred ceEEeeCChhhh---hhcCCCCCCCCCCCcEEeccCCCCC---chhHHHHhhhcC--CCCCCeEEEEeCCCh-hHHH-HH
Q 013422 154 AQLLDIRAPVEF---RQVGSPDVRGLGKRPVSIVYKGDDK---PGFLKKLSLKFK--EPENTTLFILDKFDG-NSEL-VA 223 (443)
Q Consensus 154 avLIDVRt~~Ef---e~~Ghp~l~~~~kgAinIPl~~~~~---~~fl~eL~~~lk--~~Kdk~IVV~C~sG~-RS~~-AA 223 (443)
..+|+++.+.+. ...... .-+++|+.+... ...++++...+. ..++.+|+|.|..|. ||.. ++
T Consensus 20 ~~Vin~~~~~~~~~~~~~~~~-------~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 92 (133)
T PF00782_consen 20 THVINLQEECPNPYFYKPEGI-------EYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAA 92 (133)
T ss_dssp EEEEECSSSSSTSHHHTTTTS-------EEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHH
T ss_pred CEEEEccCCCcCchhcccCCC-------EEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHH
Confidence 468999987654 221222 357788754111 112222221111 246789999999995 6654 44
Q ss_pred HHH-HHcCC
Q 013422 224 ELV-TINGF 231 (443)
Q Consensus 224 k~L-~k~GF 231 (443)
..| ...|+
T Consensus 93 ayLm~~~~~ 101 (133)
T PF00782_consen 93 AYLMKKNGM 101 (133)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHcCC
Confidence 444 44565
No 81
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=52.89 E-value=25 Score=38.97 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=10.9
Q ss_pred cccccCCCCCCCccCCc
Q 013422 358 KTLLPSPANGKALPAST 374 (443)
Q Consensus 358 ~~ll~~~~~~~~~~~~~ 374 (443)
|-|||..++..+.|+++
T Consensus 255 qELLPKvtTQeAasaAA 271 (574)
T PF07462_consen 255 QELLPKVTTQEAASAAA 271 (574)
T ss_pred HHhCCCCCCCCCCCCCC
Confidence 45789887655555543
No 82
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=51.17 E-value=34 Score=31.63 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=34.7
Q ss_pred CCCCCeEEEEeCCChh---HHHHHHHHHHcCCCcEEE--cCCCCcCh-------hhHHhCCCCccCC
Q 013422 203 EPENTTLFILDKFDGN---SELVAELVTINGFKNAYT--IKDGAEGP-------RGWMNSGLPWIPP 257 (443)
Q Consensus 203 ~~Kdk~IVV~C~sG~R---S~~AAk~L~k~GFknVy~--L~GGieG~-------~gW~~aGLPvv~~ 257 (443)
.++..+|+|+|-.|++ ...+|+.|...||+ |.+ +...-... +-+++.|.++...
T Consensus 22 ~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 22 SPKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 4678999999999975 67899999999996 444 32211111 4566777766653
No 83
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=49.55 E-value=23 Score=32.97 Aligned_cols=27 Identities=19% Similarity=0.221 Sum_probs=19.6
Q ss_pred CCCCCeEEEEeCCCh-hHHHHHHHHHHc
Q 013422 203 EPENTTLFILDKFDG-NSELVAELVTIN 229 (443)
Q Consensus 203 ~~Kdk~IVV~C~sG~-RS~~AAk~L~k~ 229 (443)
...+.||+|+|.+|. |...+...|++.
T Consensus 88 d~~n~PvLiHC~~G~~rTG~vvg~lRk~ 115 (164)
T PF03162_consen 88 DPRNYPVLIHCNHGKDRTGLVVGCLRKL 115 (164)
T ss_dssp -GGG-SEEEE-SSSSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCcchhhHHHHHHHH
Confidence 356789999999995 788888888763
No 84
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=48.24 E-value=32 Score=34.47 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=39.8
Q ss_pred CCceEEeeCC----hhhhhhcCCCCCCCCCCCcEEeccCCCCCc--h----hHHHHhhhcCCCCCCeEEEEeCCCh-hHH
Q 013422 152 ASAQLLDIRA----PVEFRQVGSPDVRGLGKRPVSIVYKGDDKP--G----FLKKLSLKFKEPENTTLFILDKFDG-NSE 220 (443)
Q Consensus 152 ~~avLIDVRt----~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~--~----fl~eL~~~lk~~Kdk~IVV~C~sG~-RS~ 220 (443)
+=..||++.+ .++|+..|+- -+++|+.+...+ . |++.+...+ ..+.+|+|.|..|. |+.
T Consensus 116 gV~~lVrlcE~~Yd~~~~~~~GI~--------~~~lpipDg~aPs~~~i~~~l~~i~~~l--~~g~~VaVHC~AGlGRTG 185 (241)
T PTZ00393 116 NVTDLVRTCERTYNDGEITSAGIN--------VHELIFPDGDAPTVDIVSNWLTIVNNVI--KNNRAVAVHCVAGLGRAP 185 (241)
T ss_pred CCCEEEECCCCCCCHHHHHHcCCe--------EEEeecCCCCCCCHHHHHHHHHHHHHHH--hcCCeEEEECCCCCCHHH
Confidence 3356777754 2455654443 456666542211 2 333332222 35678999999994 665
Q ss_pred -HHHHHHHHcCCC
Q 013422 221 -LVAELVTINGFK 232 (443)
Q Consensus 221 -~AAk~L~k~GFk 232 (443)
.+|.+|.+.|++
T Consensus 186 tl~AayLI~~Gms 198 (241)
T PTZ00393 186 VLASIVLIEFGMD 198 (241)
T ss_pred HHHHHHHHHcCCC
Confidence 566677666763
No 85
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=46.72 E-value=32 Score=32.11 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=19.0
Q ss_pred CCCCeEEEEeCCCh-hHHH-HHH-HHHHcCCC
Q 013422 204 PENTTLFILDKFDG-NSEL-VAE-LVTINGFK 232 (443)
Q Consensus 204 ~Kdk~IVV~C~sG~-RS~~-AAk-~L~k~GFk 232 (443)
.++++|+|.|..|. ||.. ++. .|...|..
T Consensus 103 ~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 103 SKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 45679999999994 7664 333 44543443
No 86
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=43.96 E-value=25 Score=30.55 Aligned_cols=34 Identities=18% Similarity=0.020 Sum_probs=23.1
Q ss_pred CeEEEEeCCChhHHHHHHHHH----HcCCCcEEEcCCCC
Q 013422 207 TTLFILDKFDGNSELVAELVT----INGFKNAYTIKDGA 241 (443)
Q Consensus 207 k~IVV~C~sG~RS~~AAk~L~----k~GFknVy~L~GGi 241 (443)
++|+++|.+|..|..+++.++ ++|+. +.+-..++
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~ 39 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITA 39 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecH
Confidence 369999999998887777664 45663 33333344
No 87
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=43.36 E-value=23 Score=30.67 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=23.6
Q ss_pred eEEEEeCCChhHHHHHHHHH----HcCCCcEEEcCCCC
Q 013422 208 TLFILDKFDGNSELVAELVT----INGFKNAYTIKDGA 241 (443)
Q Consensus 208 ~IVV~C~sG~RS~~AAk~L~----k~GFknVy~L~GGi 241 (443)
+|+++|.+|..|..+++.++ +.|+. +.+...++
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~ 38 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAY 38 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeH
Confidence 48999999998888777665 56773 44445555
No 88
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=41.97 E-value=4 Score=41.83 Aligned_cols=84 Identities=12% Similarity=0.068 Sum_probs=53.9
Q ss_pred ccCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEEeCC--
Q 013422 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF-- 215 (443)
Q Consensus 138 ~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~s-- 215 (443)
.-+++++.+.+. ....++|+|....|...|++ |++++|... ...+..-|.. .+..++|++.-..
T Consensus 15 i~~~~~~~~~l~--~~~~~~d~rg~i~~a~egIn-------gtis~~~~~--~~~~~~~l~~---~~~~~~i~l~~~~~~ 80 (314)
T PRK00142 15 IEDPEAFRDEHL--ALCKSLGLKGRILVAEEGIN-------GTVSGTIEQ--TEAYMAWLKA---DPRFADIRFKISEDD 80 (314)
T ss_pred CCCHHHHHHHHH--HHHHHcCCeeEEEEcCCCce-------EEEEecHHH--HHHHHHHHhh---CcCCCCceEEecccc
Confidence 346777777774 35678999999999974444 999999732 2334443321 2235666666544
Q ss_pred ChhH----HHHHHHHHHcCCC-cEE
Q 013422 216 DGNS----ELVAELVTINGFK-NAY 235 (443)
Q Consensus 216 G~RS----~~AAk~L~k~GFk-nVy 235 (443)
+..- .++.+.|...|+. ++.
T Consensus 81 ~~~f~~l~~~~~~eLv~~G~d~~v~ 105 (314)
T PRK00142 81 GHAFPRLSVKVRKEIVALGLDDDID 105 (314)
T ss_pred CCCcccceeeeeeeeeecCCCCCCC
Confidence 2222 5677788888885 553
No 89
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=41.33 E-value=33 Score=27.61 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=17.5
Q ss_pred eEEEEeCCChhHHHHH-H----HHHHcCCC
Q 013422 208 TLFILDKFDGNSELVA-E----LVTINGFK 232 (443)
Q Consensus 208 ~IVV~C~sG~RS~~AA-k----~L~k~GFk 232 (443)
+|+++|.+|..+...+ . .+.++|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 5899999997655444 4 45567864
No 90
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=41.21 E-value=31 Score=29.91 Aligned_cols=21 Identities=5% Similarity=0.187 Sum_probs=17.7
Q ss_pred CeEEEEeCCChhHHHHHHHHH
Q 013422 207 TTLFILDKFDGNSELVAELVT 227 (443)
Q Consensus 207 k~IVV~C~sG~RS~~AAk~L~ 227 (443)
++|+++|.+|..|...++.++
T Consensus 4 kkIllvC~~G~sTSll~~km~ 24 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMR 24 (106)
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 589999999999888886554
No 91
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=40.44 E-value=40 Score=29.58 Aligned_cols=33 Identities=9% Similarity=-0.019 Sum_probs=26.1
Q ss_pred EEEEeCCC-hhHHHHHHHHHHcCCCcEEEcCCCC
Q 013422 209 LFILDKFD-GNSELVAELVTINGFKNAYTIKDGA 241 (443)
Q Consensus 209 IVV~C~sG-~RS~~AAk~L~k~GFknVy~L~GGi 241 (443)
|+++|... .||..|..+|++..=.++.+...|+
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~ 34 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGT 34 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcc
Confidence 57899766 5899999999886534577888898
No 92
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=39.77 E-value=41 Score=37.68 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=38.0
Q ss_pred HHHHhhhcCCCCCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCC
Q 013422 194 LKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (443)
Q Consensus 194 l~eL~~~lk~~Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGi 241 (443)
.+.|...+..+-+.||||+.+.-..+...|+.|.++|| +|+.|-||=
T Consensus 505 ~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 505 RKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 44454444444578999999999999999999999998 699999986
No 93
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=39.26 E-value=30 Score=29.23 Aligned_cols=33 Identities=6% Similarity=0.067 Sum_probs=22.8
Q ss_pred eEEEEeCCChhHHHHHHHH----HHcCCCcEEEcCCCC
Q 013422 208 TLFILDKFDGNSELVAELV----TINGFKNAYTIKDGA 241 (443)
Q Consensus 208 ~IVV~C~sG~RS~~AAk~L----~k~GFknVy~L~GGi 241 (443)
+|+++|.+|..|..+++.+ +++|+. +.+-..++
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~ 37 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPE 37 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecH
Confidence 4899999999877766655 456774 44445455
No 94
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=39.25 E-value=29 Score=26.57 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=17.2
Q ss_pred eEEEEeCCC-hhHHHHHHHHHH----cCCC
Q 013422 208 TLFILDKFD-GNSELVAELVTI----NGFK 232 (443)
Q Consensus 208 ~IVV~C~sG-~RS~~AAk~L~k----~GFk 232 (443)
+|+++|.+| ..|..+++.|++ .|+.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~ 30 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIE 30 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCe
Confidence 489999999 566666665554 4664
No 95
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=39.06 E-value=1.3e+02 Score=24.92 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=25.4
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHhhcccCchhhHHHHHhhc
Q 013422 314 ALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIG 357 (443)
Q Consensus 314 al~~~l~~kl~~~~~rk~t~~~~~~~~~~~ia~~~~~~~~~~~~ 357 (443)
+++..++-|+.+++.||+.+. ||- ..-++.+--|++++-|
T Consensus 26 sl~~~~~~k~~~~~pRK~aYa---dFY-knYD~~kdFerM~~~G 65 (70)
T cd00927 26 SLGAAAAYKFLVNEPRKKAYA---DFY-KTYDAMKDFERMRKAG 65 (70)
T ss_pred HHHHHHHHHHHHhhHHHHHHH---HHH-HccChHHHHHHHHHcC
Confidence 344444458889999999775 342 3345555557777665
No 96
>PRK10126 tyrosine phosphatase; Provisional
Probab=35.74 E-value=52 Score=29.67 Aligned_cols=34 Identities=9% Similarity=0.023 Sum_probs=26.3
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHcCCCcEEEcCCCC
Q 013422 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGA 241 (443)
Q Consensus 207 k~IVV~C~sG-~RS~~AAk~L~k~GFknVy~L~GGi 241 (443)
++|+++|... .||..|..+|++.+ ..+.+-..|+
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~ 37 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGL 37 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeec
Confidence 5799999766 58999999998876 3455667777
No 97
>PRK12361 hypothetical protein; Provisional
Probab=35.67 E-value=94 Score=33.99 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=43.0
Q ss_pred cCHHHHHHHhcCCCCceEEeeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhh---hc--CCCCCCeEEEEe
Q 013422 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL---KF--KEPENTTLFILD 213 (443)
Q Consensus 139 ISa~eA~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~---~l--k~~Kdk~IVV~C 213 (443)
.++.+...+.+ .+=..+||+|.+.+........ ....-+++|+.+...+. .+++.+ .+ ....+.+|+|+|
T Consensus 108 ~~a~d~~~L~~-~gI~~Vldlt~E~~~~~~~~~~---~~i~yl~iPi~D~~~p~-~~~l~~a~~~i~~~~~~~~~VlVHC 182 (547)
T PRK12361 108 LFPADLEKLKS-NKITAILDVTAEFDGLDWSLTE---EDIDYLNIPILDHSVPT-LAQLNQAINWIHRQVRANKSVVVHC 182 (547)
T ss_pred CCcccHHHHHH-cCCCEEEEcccccccccccccc---cCceEEEeecCCCCCCc-HHHHHHHHHHHHHHHHCCCeEEEEC
Confidence 45566544442 4456799999543321000000 00146788876522221 122221 11 123568999999
Q ss_pred CCCh-hHH-HHHHHHHH
Q 013422 214 KFDG-NSE-LVAELVTI 228 (443)
Q Consensus 214 ~sG~-RS~-~AAk~L~k 228 (443)
..|. ||. .++.+|..
T Consensus 183 ~~G~sRSa~vv~ayLm~ 199 (547)
T PRK12361 183 ALGRGRSVLVLAAYLLC 199 (547)
T ss_pred CCCCCcHHHHHHHHHHH
Confidence 9995 665 45556654
No 98
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=35.17 E-value=58 Score=27.63 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=28.5
Q ss_pred chhHHHHhhhcCCCCCCeEEEEeCCChhH-HHHHHHHHHcCCC
Q 013422 191 PGFLKKLSLKFKEPENTTLFILDKFDGNS-ELVAELVTINGFK 232 (443)
Q Consensus 191 ~~fl~eL~~~lk~~Kdk~IVV~C~sG~RS-~~AAk~L~k~GFk 232 (443)
.++++.|.+ .+++++++-+++.++ ...++.|+++||.
T Consensus 20 ~e~l~~L~~-----~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 20 VEALDALRE-----RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHHH-----TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHHH-----cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 456666753 478999999999888 7889999999996
No 99
>PHA01399 membrane protein P6
Probab=35.00 E-value=53 Score=32.20 Aligned_cols=41 Identities=27% Similarity=0.324 Sum_probs=32.8
Q ss_pred hhhhHHHHHhhhhcCCCCCCchhHHHHHHHHhhhhCHHHHHHHHHHH
Q 013422 74 QALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTIL 120 (443)
Q Consensus 74 ~~~~~~e~~~~~~~~~~~~~~~~~~m~~i~~F~~~npilva~~v~~~ 120 (443)
.+...-|++|..-|.+++ .+..+-+|+.+||-+++++..++
T Consensus 143 ~a~a~weaakelgsaagg------v~~g~wdfik~npel~agg~a~~ 183 (242)
T PHA01399 143 AADAAWEAAKELGSAAGG------VIGGIWDFIKDNPELIAGGAAAA 183 (242)
T ss_pred hhhHHHHHHHHhhhhccc------hhhhHHHHhccCHHHHhhhHHHH
Confidence 344568999998887654 48888999999999999987664
No 100
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=34.84 E-value=49 Score=27.91 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=21.0
Q ss_pred eEEEEeCCChh-HHHHH----HHHHHcCCCcEEEcCCCC
Q 013422 208 TLFILDKFDGN-SELVA----ELVTINGFKNAYTIKDGA 241 (443)
Q Consensus 208 ~IVV~C~sG~R-S~~AA----k~L~k~GFknVy~L~GGi 241 (443)
+|+++|.+|.. |..++ +.|.++|+. +-+....+
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~ 41 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRV 41 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecH
Confidence 69999999985 44434 445667884 43334344
No 101
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=34.54 E-value=1.2e+02 Score=26.28 Aligned_cols=49 Identities=24% Similarity=0.288 Sum_probs=23.1
Q ss_pred HHhHHHHHHHHHhhhc-chhhHHHHHHHHHHHhhcccCchhhHHHHHhhccccccC
Q 013422 309 ILGSAALVQFASKKLL-FAEDRKQTLQQVDEFLNTKVAPKELADDIKQIGKTLLPS 363 (443)
Q Consensus 309 ~~gt~al~~~l~~kl~-~~~~rk~t~~~~~~~~~~~ia~~~~~~~~~~~~~~ll~~ 363 (443)
+|...++..|=.+||+ ..|+--+++++.|+ +.+|+-||.++-....-|.
T Consensus 11 iIlvi~LllFGpkKLPel~r~lGk~ir~fK~------a~~~~~~e~~~~~~~~~~~ 60 (92)
T PRK00575 11 ILAVVVILLFGAKKLPDAARSLGKSLRIFKS------EVKEMQSDNKAEASAAAAQ 60 (92)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHH------HHhhhhhcccccccccccc
Confidence 3444555555556665 34444455544444 2344455555444333333
No 102
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=34.09 E-value=54 Score=31.99 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=23.9
Q ss_pred eEEEEeCCCh-hHHHHHHHHHHcCCCcEEEc
Q 013422 208 TLFILDKFDG-NSELVAELVTINGFKNAYTI 237 (443)
Q Consensus 208 ~IVV~C~sG~-RS~~AAk~L~k~GFknVy~L 237 (443)
.+-++|.+.+ ||..|-..|+++|| +|...
T Consensus 3 ~~avVCasN~NRSMEAH~~L~~~G~-~V~Sf 32 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAHNVLKKAGF-NVRSF 32 (195)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEccCCCCcCHHHHHHHHHCCC-ceEee
Confidence 5789999984 89999999999999 56555
No 103
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=33.96 E-value=35 Score=33.23 Aligned_cols=95 Identities=17% Similarity=0.297 Sum_probs=53.2
Q ss_pred CCCeEEEEeCCCh-h---HHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCCCCCccc-ccchhhHHhhhccccc
Q 013422 205 ENTTLFILDKFDG-N---SELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGL-DLSNLTETISGAIGEG 279 (443)
Q Consensus 205 Kdk~IVV~C~sG~-R---S~~AAk~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~~k~~sl-dl~rqvr~iag~v~~~ 279 (443)
+...|.+---+|. . +....+.|.++|+ ++|.|.|- |...||--.-+ |+. |+....|+|+...-
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~-~~y~LDGD------nvR~gL~~dLg---Fs~edR~eniRRvaevAk-- 89 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGY-HVYLLDGD------NVRHGLNRDLG---FSREDRIENIRRVAEVAK-- 89 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCC-eEEEecCh------hHhhcccCCCC---CChHHHHHHHHHHHHHHH--
Confidence 3344445444553 2 4556778899998 79999873 45555532211 333 22223334443111
Q ss_pred CchhhHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHhhhcchhhHHHHHHHHHH--Hh
Q 013422 280 SEGFSVTLAIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDE--FL 340 (443)
Q Consensus 280 s~~~P~~~~laA~vG~Gl~a~s~~e~~lq~~gt~al~~~l~~kl~~~~~rk~t~~~~~~--~~ 340 (443)
-++-+|+++ +..|++ ||.++|++.-+.+.+ |+
T Consensus 90 -----------ll~daG~iv---------------iva~IS---P~r~~R~~aR~~~~~~~Fi 123 (197)
T COG0529 90 -----------LLADAGLIV---------------IVAFIS---PYREDRQMARELLGEGEFI 123 (197)
T ss_pred -----------HHHHCCeEE---------------EEEeeC---ccHHHHHHHHHHhCcCceE
Confidence 112334433 444555 999999999999986 65
No 104
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=32.88 E-value=61 Score=30.12 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=31.2
Q ss_pred CCCCCeEEEEeCCCh--hHHHHHHHHHH---cCCCcEEEcCCCCcCh
Q 013422 203 EPENTTLFILDKFDG--NSELVAELVTI---NGFKNAYTIKDGAEGP 244 (443)
Q Consensus 203 ~~Kdk~IVV~C~sG~--RS~~AAk~L~k---~GFknVy~L~GGieG~ 244 (443)
.+++..+|++|..|. .|...|++|.+ .|..++..+.||-.|-
T Consensus 64 i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 64 IPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp SHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred ccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 357888999999995 69999999877 6888999999999554
No 105
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=32.43 E-value=87 Score=31.46 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=53.5
Q ss_pred CcccCHHHHHHHhcCCCCc-----eEEeeCChhhhhhcC------CCCCCCCCCCcEEeccC--CCCCchhHHHHhhhcC
Q 013422 136 WGVESARNAYAKLGDDASA-----QLLDIRAPVEFRQVG------SPDVRGLGKRPVSIVYK--GDDKPGFLKKLSLKFK 202 (443)
Q Consensus 136 ~g~ISa~eA~~LLn~~~~a-----vLIDVRt~~Efe~~G------hp~l~~~~kgAinIPl~--~~~~~~fl~eL~~~lk 202 (443)
...=||.++...+. ++++ +-+-|=+-.||++.- ..++.+ =-+..|+- ..+-..+++.++..++
T Consensus 57 i~~dTP~~aL~klk-~~gy~eviiQ~lhiIpG~EyEklvr~V~~~~~dF~~---lkig~PlLy~k~DYe~~v~aik~~~p 132 (265)
T COG4822 57 IDFDTPIQALNKLK-DQGYEEVIIQPLHIIPGIEYEKLVREVNKYSNDFKR---LKIGRPLLYYKNDYEICVEAIKDQIP 132 (265)
T ss_pred cccCCHHHHHHHHH-HccchheeeeeeeecCchHHHHHHHHHHHHhhhhhe---eecCCceeechhhHHHHHHHHHHhcC
Confidence 34457888888876 3332 224455666776420 001111 11122331 1112235566665553
Q ss_pred -CCCCCeEEEEeCCChhHHHHH-----HHHHHcCCCcEEEc
Q 013422 203 -EPENTTLFILDKFDGNSELVA-----ELVTINGFKNAYTI 237 (443)
Q Consensus 203 -~~Kdk~IVV~C~sG~RS~~AA-----k~L~k~GFknVy~L 237 (443)
..++..+|++|........++ ..|.+.||.+|++.
T Consensus 133 pl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 133 PLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred CcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 568899999999766544333 24678899998864
No 106
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=32.29 E-value=54 Score=28.93 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=27.1
Q ss_pred eEEEEeCCC-hhHHHHHHHHHHcCCC-cEEEcCCCC
Q 013422 208 TLFILDKFD-GNSELVAELVTINGFK-NAYTIKDGA 241 (443)
Q Consensus 208 ~IVV~C~sG-~RS~~AAk~L~k~GFk-nVy~L~GGi 241 (443)
+|+++|... .||..|..+|++..-+ ++.+...|+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~ 37 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGT 37 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCC
Confidence 699999766 5899999999876543 677888888
No 107
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=31.81 E-value=58 Score=33.62 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=19.5
Q ss_pred ccCHHHHHHHhcCCCCceEEeeCCh
Q 013422 138 VESARNAYAKLGDDASAQLLDIRAP 162 (443)
Q Consensus 138 ~ISa~eA~~LLn~~~~avLIDVRt~ 162 (443)
.+|+..+.+.+. .++.+++|.|+.
T Consensus 5 ~~s~~wlnr~l~-~~nllllDCRse 28 (343)
T KOG1717|consen 5 SKSVAWLNRQLE-LGNLLLLDCRSE 28 (343)
T ss_pred HHHHHHHHhhcc-cCceEEEecCCc
Confidence 367888888885 678999999993
No 108
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=31.46 E-value=2e+02 Score=23.78 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=21.1
Q ss_pred hhcchhhHHHHHHHHHHHhhcccCchhhHHHHHhhc
Q 013422 322 KLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIG 357 (443)
Q Consensus 322 kl~~~~~rk~t~~~~~~~~~~~ia~~~~~~~~~~~~ 357 (443)
|+.+++.||+.+. ||. ..-++.+-.+|+++-|
T Consensus 36 kf~v~~pRKk~Ya---dFY-knYD~~k~fe~M~~~G 67 (73)
T PF02937_consen 36 KFGVAEPRKKAYA---DFY-KNYDPMKDFEEMRKAG 67 (73)
T ss_dssp HHHTHHHHHHHHH---HHH-HT--HHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHH---HHH-HccChHHHHHHHHhcC
Confidence 7779999999875 453 3345566667777655
No 109
>PRK13530 arsenate reductase; Provisional
Probab=31.12 E-value=86 Score=27.96 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=33.1
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHcCCCcEEEcCCCCcCh-------hhHHhCCCCcc
Q 013422 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGAEGP-------RGWMNSGLPWI 255 (443)
Q Consensus 207 k~IVV~C~sG-~RS~~AAk~L~k~GFknVy~L~GGieG~-------~gW~~aGLPvv 255 (443)
++|+++|... .||..|..++++++=.++.+...|++.. ..=++.|+++.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~~~~~~~~a~~~l~e~Gi~~~ 60 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIEAHGVNPNAIKAMKEVGIDIS 60 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCCCCCCCHHHHHHHHHcCCCcC
Confidence 5799999766 5888888888875434677778888432 23344566653
No 110
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=31.09 E-value=1.3e+02 Score=30.97 Aligned_cols=71 Identities=17% Similarity=0.196 Sum_probs=46.0
Q ss_pred cccCHHHHHHHhcCCCCceEEeeCChhhhhhc--CCCCCCCCCCCcEEeccC-CCCCchhHHHHhhhc-CCCCCCeEEEE
Q 013422 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQV--GSPDVRGLGKRPVSIVYK-GDDKPGFLKKLSLKF-KEPENTTLFIL 212 (443)
Q Consensus 137 g~ISa~eA~~LLn~~~~avLIDVRt~~Efe~~--Ghp~l~~~~kgAinIPl~-~~~~~~fl~eL~~~l-k~~Kdk~IVV~ 212 (443)
..+...++.+.+. +.+.++||+|+..+|... ||+ |+. +-....|...|...+ +.+.+++|++-
T Consensus 136 tg~gKt~Ll~~L~-~~~~~VvDlr~~a~hrGs~fG~~------------~~~~qpsq~~fe~~L~~~l~~~~~~~~i~~e 202 (311)
T TIGR03167 136 TGSGKTELLHALA-NAGAQVLDLEGLANHRGSSFGAL------------GLGPQPSQKRFENALAEALRRLDPGRPIFVE 202 (311)
T ss_pred CCcCHHHHHHHHh-cCCCeEEECCchHHhcCcccCCC------------CCCCCCchHHHHHHHHHHHHhCCCCceEEEE
Confidence 3477788888886 567899999999999841 333 221 001234544554333 34667899999
Q ss_pred eCCChhHH
Q 013422 213 DKFDGNSE 220 (443)
Q Consensus 213 C~sG~RS~ 220 (443)
|.+.....
T Consensus 203 ~es~~ig~ 210 (311)
T TIGR03167 203 DESRRIGR 210 (311)
T ss_pred eCchhhcc
Confidence 99876544
No 111
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=31.00 E-value=1.1e+02 Score=34.35 Aligned_cols=11 Identities=45% Similarity=0.649 Sum_probs=5.8
Q ss_pred HHHHHHHHHHh
Q 013422 330 KQTLQQVDEFL 340 (443)
Q Consensus 330 k~t~~~~~~~~ 340 (443)
+..||+-+|+|
T Consensus 248 k~ALq~YqELL 258 (574)
T PF07462_consen 248 KEALQAYQELL 258 (574)
T ss_pred HHHHHHHHHhC
Confidence 44555555554
No 112
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=30.80 E-value=85 Score=28.38 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=25.7
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHcCCCcEEEcCCCC
Q 013422 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGA 241 (443)
Q Consensus 207 k~IVV~C~sG-~RS~~AAk~L~k~GFknVy~L~GGi 241 (443)
++|+++|... .||..|..+|++.+ .++.+-..|.
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~ 37 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGV 37 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccc
Confidence 4799999655 58999999988764 2455677788
No 113
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=30.24 E-value=68 Score=31.88 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=22.8
Q ss_pred CCeEEEEeCCCh---hHHHHHHHHHHcCCC
Q 013422 206 NTTLFILDKFDG---NSELVAELVTINGFK 232 (443)
Q Consensus 206 dk~IVV~C~sG~---RS~~AAk~L~k~GFk 232 (443)
.++|+|+|-.|+ ....+|+.|...||+
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~~ 89 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGYE 89 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCCe
Confidence 368999998665 578999999999995
No 114
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=29.73 E-value=94 Score=34.69 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=31.9
Q ss_pred CCeEEEEeCCChh---HHHHHHHHHHcCCCcEEEc-CCCCcCh------hhHHhCCCCc
Q 013422 206 NTTLFILDKFDGN---SELVAELVTINGFKNAYTI-KDGAEGP------RGWMNSGLPW 254 (443)
Q Consensus 206 dk~IVV~C~sG~R---S~~AAk~L~k~GFknVy~L-~GGieG~------~gW~~aGLPv 254 (443)
.++|+|+|-.|++ ...+|+.|...||+ |.++ .+...+. ..|+..|.++
T Consensus 135 ~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 135 YSRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CCEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 4689999988865 67899999999996 3333 3332221 3466666554
No 115
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=28.80 E-value=87 Score=29.98 Aligned_cols=80 Identities=23% Similarity=0.238 Sum_probs=42.0
Q ss_pred CcccCHHHHHHHhcCCCCceEEeeCCh---hhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhcCCCCCCeEEEE
Q 013422 136 WGVESARNAYAKLGDDASAQLLDIRAP---VEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFIL 212 (443)
Q Consensus 136 ~g~ISa~eA~~LLn~~~~avLIDVRt~---~Efe~~Ghp~l~~~~kgAinIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~ 212 (443)
.+.+.++-+.-+-.-+.+..+||+=.. ++|.. ....|++.+.+ .++++|||++
T Consensus 44 ~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~---------------------~~~~fv~~iR~---~hP~tPIllv 99 (178)
T PF14606_consen 44 NGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRE---------------------RLDGFVKTIRE---AHPDTPILLV 99 (178)
T ss_dssp CCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHH---------------------HHHHHHHHHHT---T-SSS-EEEE
T ss_pred ccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHH---------------------HHHHHHHHHHH---hCCCCCEEEE
Confidence 345666544333222558889998654 11111 02346666654 5778999998
Q ss_pred eCCCh-----h-------------HHHHHHHHHHcCCCcEEEcCC
Q 013422 213 DKFDG-----N-------------SELVAELVTINGFKNAYTIKD 239 (443)
Q Consensus 213 C~sG~-----R-------------S~~AAk~L~k~GFknVy~L~G 239 (443)
-.... + -..+.+.|++.|.+|+|.+.|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 100 SPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDG 144 (178)
T ss_dssp E----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-H
T ss_pred ecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCc
Confidence 73221 0 335667788889999999876
No 116
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=28.59 E-value=1e+02 Score=25.89 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=27.8
Q ss_pred CCCCeEEEEe---CCChhHHHHHHHHHHcCCCcEEE
Q 013422 204 PENTTLFILD---KFDGNSELVAELVTINGFKNAYT 236 (443)
Q Consensus 204 ~Kdk~IVV~C---~sG~RS~~AAk~L~k~GFknVy~ 236 (443)
.++++|+|++ .+|..-..+.+.|++.|.+.|..
T Consensus 86 ~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 86 IKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp GTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred ccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 3578898865 89999999999999999987654
No 117
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=28.38 E-value=96 Score=25.52 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=31.2
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCC
Q 013422 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (443)
Q Consensus 205 Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGi 241 (443)
.+.+++|+|.+-.......+.|.+.++ .++.+.|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 467899999999999999999998776 588888887
No 118
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=28.17 E-value=1.3e+02 Score=29.45 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=26.4
Q ss_pred CCeEEEEeCCChh---HHHHHHHHHHcCCCcEEEcCCC
Q 013422 206 NTTLFILDKFDGN---SELVAELVTINGFKNAYTIKDG 240 (443)
Q Consensus 206 dk~IVV~C~sG~R---S~~AAk~L~k~GFknVy~L~GG 240 (443)
..+|+|+|-.|++ ...+|+.|...|+.-...+.|.
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~ 86 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGD 86 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCC
Confidence 5789999988865 7899999999997533333343
No 119
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=27.36 E-value=4e+02 Score=31.61 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=23.4
Q ss_pred hhhhHHHHHhhhhcCCCCCCchhHHHHHHHHhhhhCHHHHHHHHHH
Q 013422 74 QALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTI 119 (443)
Q Consensus 74 ~~~~~~e~~~~~~~~~~~~~~~~~~m~~i~~F~~~npilva~~v~~ 119 (443)
.+..|++-++.-+++ -.+-++++.+--=+.+||+-++.-+++
T Consensus 141 ~s~eyV~~l~~gl~t----~~l~~CleslRVsL~~npVSwvn~Fgv 182 (1102)
T KOG1924|consen 141 SSPEYVVELRSGLST----KKLLECLESLRVSLTSNPVSWVNKFGV 182 (1102)
T ss_pred CChHHHHHHHccccc----ccHHHHHHHHhhhhcCCccHHHHHhhh
Confidence 344566666555333 345566666655566777766654443
No 120
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=26.75 E-value=1.1e+02 Score=27.12 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=27.3
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcC
Q 013422 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIK 238 (443)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~ 238 (443)
-++++++|+-. |+-+..++..|.+.|+++++++.
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEE
Confidence 35677777765 88899999999999999888763
No 121
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=26.51 E-value=74 Score=26.09 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=25.6
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCC
Q 013422 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (443)
Q Consensus 205 Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGi 241 (443)
.+.||+++. +.-.....+.|++.+.+++|.+ ||.
T Consensus 49 ~~~PIll~~--~~l~~~~~~~l~~~~~~~v~ii-Gg~ 82 (92)
T PF04122_consen 49 NNAPILLVN--NSLPSSVKAFLKSLNIKKVYII-GGE 82 (92)
T ss_pred cCCeEEEEC--CCCCHHHHHHHHHcCCCEEEEE-CCC
Confidence 356766666 4445888889999999999988 665
No 122
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=24.71 E-value=77 Score=25.64 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=16.7
Q ss_pred eEEEEeCCChhHH-HHHH----HHHHcCCC
Q 013422 208 TLFILDKFDGNSE-LVAE----LVTINGFK 232 (443)
Q Consensus 208 ~IVV~C~sG~RS~-~AAk----~L~k~GFk 232 (443)
+|+++|.+|..+. ..+. .+.+.|+.
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i~ 31 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGID 31 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 6999999998543 4444 44455663
No 123
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=24.64 E-value=1.9e+02 Score=31.14 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=4.6
Q ss_pred CCCCCCCccc
Q 013422 401 PQVNSVPKTE 410 (443)
Q Consensus 401 ~~~~~~~~~~ 410 (443)
+...++|+.|
T Consensus 182 ~p~~~apv~e 191 (457)
T KOG0559|consen 182 PPKEAAPVAE 191 (457)
T ss_pred CccccCCCCC
Confidence 4444455444
No 124
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.36 E-value=80 Score=31.05 Aligned_cols=40 Identities=18% Similarity=0.449 Sum_probs=27.9
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCCcEEEcC-CCCcChhhHHhC
Q 013422 208 TLFILDKFDGNSELVAELVTINGFKNAYTIK-DGAEGPRGWMNS 250 (443)
Q Consensus 208 ~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~-GGieG~~gW~~a 250 (443)
.|+-+-+.+.-...|.+.|..+||.||.+.. +|. .||.+.
T Consensus 96 ~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~---~G~~~~ 136 (209)
T COG2518 96 RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS---KGWPEE 136 (209)
T ss_pred eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc---cCCCCC
Confidence 5555555555566777889999999876554 455 777663
No 125
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=24.35 E-value=1.4e+02 Score=31.12 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=32.6
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCCc
Q 013422 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAE 242 (443)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGie 242 (443)
....+++|+|++-.++...++.|.+.|+ ++..+.|++.
T Consensus 253 ~~~~~~lVF~~t~~~~~~l~~~L~~~g~-~v~~lhg~~~ 290 (423)
T PRK04837 253 EWPDRAIIFANTKHRCEEIWGHLAADGH-RVGLLTGDVA 290 (423)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHhCCC-cEEEecCCCC
Confidence 4457899999999999999999999998 5777888873
No 126
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=24.33 E-value=85 Score=25.69 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=16.8
Q ss_pred CeEEEEeCCChhHH-HHH----HHHHHcCCC
Q 013422 207 TTLFILDKFDGNSE-LVA----ELVTINGFK 232 (443)
Q Consensus 207 k~IVV~C~sG~RS~-~AA----k~L~k~GFk 232 (443)
++|+++|.+|..+. .++ +.+.+.|..
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~ 31 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLE 31 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 36999999997544 334 344555664
No 127
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=24.32 E-value=90 Score=25.29 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=24.8
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHhhhcchhhHHHHHHHHHHHhhcccCchh
Q 013422 284 SVTLAIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKE 348 (443)
Q Consensus 284 P~~~~laA~vG~Gl~a~s~~e~~lq~~gt~al~~~l~~kl~~~~~rk~t~~~~~~~~~~~ia~~~ 348 (443)
|.+...+++.|+|+++|.+ |+=-.=+-+.+|+|+ +..+.+++|.|+|
T Consensus 15 p~~a~wG~aa~~~v~~f~~--------~vPr~q~dil~KIP~----------~G~~~~~~ippeD 61 (64)
T PF09796_consen 15 PNLALWGGAAGAAVLFFTS--------GVPRFQRDILQKIPV----------FGSYWIKEIPPED 61 (64)
T ss_pred HHHHHHHHHHHHHHHHHhc--------CCcHHHHHHHHhCCc----------cccccccCCCccc
Confidence 4444456666666655554 121233344445555 2344577777776
No 128
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=24.21 E-value=1.1e+02 Score=30.84 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=32.0
Q ss_pred HHHHHhhhhcccee--eeehhhhhhhhhhhhHHHHHhhhhcCCCCCCc-hhHHHHHHHHhhhhC-HHHHHHHH
Q 013422 49 FLECFAKSVHGGLV--LLSSVLGTGLAQALTYEEALQQSAGSSASDVD-ASGFIDSVISFGTEN-PLAIAGGV 117 (443)
Q Consensus 49 ~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~m~~i~~F~~~n-pilva~~v 117 (443)
.+...-.++|+||| ++.+++-.|.++..+. | +++ --.|-.++.+|+..| |.++...+
T Consensus 64 aRR~~DTRvf~rIy~~la~~vi~~qr~~~~~~----------S--~i~ARv~lsRE~VdFfE~~lP~lits~v 124 (237)
T PF13748_consen 64 ARRIYDTRVFSRIYAELAVPVILSQRQQGLSV----------S--TIAARVALSREFVDFFEQHLPTLITSVV 124 (237)
T ss_pred hhHHHhhHHHHHHHHHHhHHHHHHHHHhCCCh----------h--HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35556678889988 4555555555332211 1 111 113566788889888 56655433
No 129
>PF08997 UCR_6-4kD: Ubiquinol-cytochrome C reductase complex, 6.4kD protein; InterPro: IPR015089 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4 kDa protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein-binding factor []. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0009055 electron carrier activity; PDB: 1NTM_K 1SQV_K 1SQB_K 1NU1_K 1SQQ_K 1BE3_K 1BGY_W 2YBB_k 2FYU_K 1L0N_K ....
Probab=23.89 E-value=58 Score=25.85 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=24.9
Q ss_pred CchhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 013422 280 SEGFSVTLAIAAAAGLGVLAFSEIETILQIL 310 (443)
Q Consensus 280 s~~~P~~~~laA~vG~Gl~a~s~~e~~lq~~ 310 (443)
....|.....+++.|.+|+.|++|..+||++
T Consensus 15 k~w~ps~~~~G~~~~l~lvy~TDWklIl~yv 45 (56)
T PF08997_consen 15 KNWIPSAAAWGAAGGLALVYFTDWKLILQYV 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHTTS
T ss_pred HHhchhHHHHhhhhhhheeeecchHhhhhhc
Confidence 3456777778899999999999999877764
No 130
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.71 E-value=1.5e+02 Score=26.61 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=33.3
Q ss_pred CCeEEEEeCCChh----HHHHHHHHHHcCCCcEEEcCCCCcCh---hhHHhCCCC
Q 013422 206 NTTLFILDKFDGN----SELVAELVTINGFKNAYTIKDGAEGP---RGWMNSGLP 253 (443)
Q Consensus 206 dk~IVV~C~sG~R----S~~AAk~L~k~GFknVy~L~GGieG~---~gW~~aGLP 253 (443)
+-.+|++|..-.. .....+.|++.|..++.++.||.... ..|++.|+.
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVA 107 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCC
Confidence 5668888887653 45667778888887787888886433 456666654
No 131
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=23.69 E-value=1.2e+02 Score=24.17 Aligned_cols=17 Identities=0% Similarity=-0.111 Sum_probs=13.7
Q ss_pred CCeEEEEeCCCh-hHHHH
Q 013422 206 NTTLFILDKFDG-NSELV 222 (443)
Q Consensus 206 dk~IVV~C~sG~-RS~~A 222 (443)
+.+|+|.|..|. |+...
T Consensus 39 ~~pvlVHC~~G~gRtg~~ 56 (105)
T smart00012 39 SGPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CCCEEEEeCCCCChhhHH
Confidence 679999999995 76643
No 132
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=23.69 E-value=1.2e+02 Score=24.17 Aligned_cols=17 Identities=0% Similarity=-0.111 Sum_probs=13.7
Q ss_pred CCeEEEEeCCCh-hHHHH
Q 013422 206 NTTLFILDKFDG-NSELV 222 (443)
Q Consensus 206 dk~IVV~C~sG~-RS~~A 222 (443)
+.+|+|.|..|. |+...
T Consensus 39 ~~pvlVHC~~G~gRtg~~ 56 (105)
T smart00404 39 SGPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CCCEEEEeCCCCChhhHH
Confidence 679999999995 76643
No 133
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=23.53 E-value=69 Score=25.00 Aligned_cols=48 Identities=15% Similarity=0.080 Sum_probs=31.0
Q ss_pred chhhHHhhhcccccCchh---hHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 013422 266 SNLTETISGAIGEGSEGF---SVTLAIAAAAGLGVLAFSEIETILQILGSAALVQFAS 320 (443)
Q Consensus 266 ~rqvr~iag~v~~~s~~~---P~~~~laA~vG~Gl~a~s~~e~~lq~~gt~al~~~l~ 320 (443)
||++|.+.|.+....... ....|+.+++|+.+++ +.+. |-|-+-.++-
T Consensus 9 dR~~R~~~G~~l~~~~~~~~~~~~~~~~~~~g~~ll~-~g~~------g~Cp~~~llg 59 (66)
T PF11127_consen 9 DRIVRIIIGIVLLALGLLGLFGSWGWLLGFVGAMLLV-TGIT------GFCPLYALLG 59 (66)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH-HHHH------CcCHhHHHhC
Confidence 599998887775222111 1116778888888755 6654 7888877763
No 134
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=23.42 E-value=81 Score=27.85 Aligned_cols=23 Identities=4% Similarity=0.088 Sum_probs=18.6
Q ss_pred CeEEEEeCCChhHHHHHHHHHHc
Q 013422 207 TTLFILDKFDGNSELVAELVTIN 229 (443)
Q Consensus 207 k~IVV~C~sG~RS~~AAk~L~k~ 229 (443)
++|.++|..|.++...++.+++.
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~a 24 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKA 24 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 47999999999988777777654
No 135
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=22.99 E-value=1.3e+02 Score=33.44 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=33.3
Q ss_pred CCCCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCC
Q 013422 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (443)
Q Consensus 203 ~~Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGi 241 (443)
..++.+++|+|++-..+...++.|.+.|| ++..+.|++
T Consensus 254 ~~~~~k~LVF~nt~~~ae~l~~~L~~~g~-~v~~lhg~l 291 (572)
T PRK04537 254 RSEGARTMVFVNTKAFVERVARTLERHGY-RVGVLSGDV 291 (572)
T ss_pred cccCCcEEEEeCCHHHHHHHHHHHHHcCC-CEEEEeCCC
Confidence 34567899999999999999999999998 588888887
No 136
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.65 E-value=1.5e+02 Score=32.26 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=23.1
Q ss_pred CCeEEEEeCCChh---HHHHHHHHHHcCCC
Q 013422 206 NTTLFILDKFDGN---SELVAELVTINGFK 232 (443)
Q Consensus 206 dk~IVV~C~sG~R---S~~AAk~L~k~GFk 232 (443)
+++|+|+|-.|++ ...+|+.|...||+
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~ 88 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHHFGYK 88 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCc
Confidence 3689999988865 67899999999996
No 137
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=22.63 E-value=83 Score=25.28 Aligned_cols=27 Identities=7% Similarity=-0.020 Sum_probs=17.1
Q ss_pred eEEEEeCCChh-HHHHHHH----HHHcCCCcE
Q 013422 208 TLFILDKFDGN-SELVAEL----VTINGFKNA 234 (443)
Q Consensus 208 ~IVV~C~sG~R-S~~AAk~----L~k~GFknV 234 (443)
+++++|.+|.. |....+. +.+.|+...
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~ 32 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEAE 32 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcEE
Confidence 38999999984 4444434 445566433
No 138
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=22.63 E-value=79 Score=32.76 Aligned_cols=36 Identities=17% Similarity=-0.030 Sum_probs=27.8
Q ss_pred CcccCHHHHHHHhc-C----CCCceEEeeCChhhhhhcCCCC
Q 013422 136 WGVESARNAYAKLG-D----DASAQLLDIRAPVEFRQVGSPD 172 (443)
Q Consensus 136 ~g~ISa~eA~~LLn-~----~~~avLIDVRt~~Efe~~Ghp~ 172 (443)
...+++++..+++. . +.+.++||||++. |+....++
T Consensus 276 ~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~ 316 (339)
T PRK07688 276 KEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKD 316 (339)
T ss_pred cCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcC
Confidence 45699999998883 2 3578999999988 88655554
No 139
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=22.59 E-value=1.4e+02 Score=24.33 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=23.9
Q ss_pred CCCeEEEEeCCCh--hHHHHHHHHHHcCCCcE
Q 013422 205 ENTTLFILDKFDG--NSELVAELVTINGFKNA 234 (443)
Q Consensus 205 Kdk~IVV~C~sG~--RS~~AAk~L~k~GFknV 234 (443)
++-+|-|+-.+|. .+..++..|+..||+.+
T Consensus 2 ~~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~ 33 (90)
T PF13399_consen 2 SDVRVEVLNGTGVSGLAARVADALRNRGFTVV 33 (90)
T ss_pred CceEEEEEECcCCcCHHHHHHHHHHHCCCcee
Confidence 3557778877775 58899999999999754
No 140
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=22.36 E-value=1.2e+02 Score=27.00 Aligned_cols=47 Identities=11% Similarity=0.023 Sum_probs=32.1
Q ss_pred EEEEeCCC-hhHHHHHHHHHHcCCCcEEEcCCCCcCh-------hhHHhCCCCcc
Q 013422 209 LFILDKFD-GNSELVAELVTINGFKNAYTIKDGAEGP-------RGWMNSGLPWI 255 (443)
Q Consensus 209 IVV~C~sG-~RS~~AAk~L~k~GFknVy~L~GGieG~-------~gW~~aGLPvv 255 (443)
|+++|... .||..|..++++.+=.++.+...|+++. ..-++.|+++.
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~~~~~~~~~a~~~l~e~Gid~~ 55 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGIEAHGLNPNAVKAMKEVGIDIS 55 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCHHHHHHHHHcCCCcC
Confidence 57899765 5888888888876335677788888543 34445566653
No 141
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=21.95 E-value=1.2e+02 Score=24.25 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=22.5
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHc
Q 013422 204 PENTTLFILDKFDGNSELVAELVTIN 229 (443)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~AAk~L~k~ 229 (443)
..|..|+++|+++..+....+.|+++
T Consensus 45 AgdDTilvi~~~~~~a~~l~~~l~~l 70 (70)
T PF02863_consen 45 AGDDTILVICRSEEDAEELEEKLKEL 70 (70)
T ss_dssp EESSEEEEEESTTSHHHHHHHHHHTT
T ss_pred eCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence 45789999999999999999988763
No 142
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=21.80 E-value=37 Score=31.95 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=37.3
Q ss_pred HHhhhhCHHHHHHHHHHH-HHHHHHHH--hhcCCCCCcccCHHHH-HHHhcCCCCceEEeeCChhhhhhcCCCCCC
Q 013422 103 ISFGTENPLAIAGGVTIL-AVPLVLSQ--VLNKPKSWGVESARNA-YAKLGDDASAQLLDIRAPVEFRQVGSPDVR 174 (443)
Q Consensus 103 ~~F~~~npilva~~v~~~-vL~~~l~~--~~~k~~~~g~ISa~eA-~~LLn~~~~avLIDVRt~~Efe~~Ghp~l~ 174 (443)
.+|+.+||-|+++..++. .+..+++. .++ ++.+-.-.+ .-.++ ...+.||++...|+..|.-+||
T Consensus 29 ~~Fi~~HP~L~~~M~~~y~~~~~lm~~spy~G----~~s~~~ftv~fv~m~---~~llfDI~P~YrfEDIdvLDLR 97 (155)
T PF10777_consen 29 SSFIRNHPYLCLAMYAAYLAVAALMYYSPYFG----LGSVWGFTVFFVVMA---AFLLFDIKPRYRFEDIDVLDLR 97 (155)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHhcchhh----hHHHHHHHHHHHHHH---HHHHhhccceeeecccCeeEEe
Confidence 478999999987754442 22222222 221 222222222 22333 4788999999999976766543
No 143
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=21.75 E-value=1.2e+02 Score=27.57 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=28.4
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHcCCCcEEEcCCCC
Q 013422 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGA 241 (443)
Q Consensus 207 k~IVV~C~sG-~RS~~AAk~L~k~GFknVy~L~GGi 241 (443)
.+|+++|... .||..|-.++++..=.++.+...|.
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt 38 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGT 38 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCcc
Confidence 5799999876 4899988888877446788888886
No 144
>PHA01794 hypothetical protein
Probab=21.59 E-value=2.4e+02 Score=26.01 Aligned_cols=57 Identities=25% Similarity=0.411 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHhhhcchhhHHHHHHHHHHHhhccc----CchhhHHHHHh
Q 013422 294 GLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKV----APKELADDIKQ 355 (443)
Q Consensus 294 G~Gl~a~s~~e~~lq~~gt~al~~~l~~kl~~~~~rk~t~~~~~~~~~~~i----a~~~~~~~~~~ 355 (443)
|+|.+++.-++.-=. +.+-+.++.++|-+-..+ ++..|.+||++-. .-.+|-.||++
T Consensus 22 Gag~Lf~~ile~dd~--Alvdllrl~~~~~lted~---~~~aI~d~v~~~~~Ee~~~e~lF~eleq 82 (134)
T PHA01794 22 GAGALFFNILERDES--AIVDLVRLSAKKALTEDE---ILDAIADFVETFEDEEGTTEGLFAELEK 82 (134)
T ss_pred cHHHHHHHHHhcchH--HHHHHHHHHhccccChhh---HHHHHHHHHHHhhhhcchHHHHHHHHHH
Confidence 666666555543111 445566665554454444 8899999995444 45566666653
No 145
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=21.57 E-value=1.5e+02 Score=27.61 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=31.4
Q ss_pred CCCCeEEEEeCCCh--hHHHHHHHHHHc---CCCcEEEcCCCCcC
Q 013422 204 PENTTLFILDKFDG--NSELVAELVTIN---GFKNAYTIKDGAEG 243 (443)
Q Consensus 204 ~Kdk~IVV~C~sG~--RS~~AAk~L~k~---GFknVy~L~GGieG 243 (443)
+.+.-+|++|..|. .|...|+.|.+. |..++..+.||-.|
T Consensus 65 ~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G 109 (157)
T PRK00103 65 PKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADG 109 (157)
T ss_pred CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccc
Confidence 44567899999995 699999998764 65689999999843
No 146
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.54 E-value=7.3e+02 Score=27.62 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=9.4
Q ss_pred hHHHHHhhhhccceeeee
Q 013422 48 NFLECFAKSVHGGLVLLS 65 (443)
Q Consensus 48 ~~~~~~~~~~~g~~~~~~ 65 (443)
.|+.++..+-.+..||..
T Consensus 27 ~L~~~i~~~~i~~a~Lf~ 44 (585)
T PRK14950 27 TLRNAIAEGRVAHAYLFT 44 (585)
T ss_pred HHHHHHHhCCCceEEEEE
Confidence 355555554445555554
No 147
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=21.49 E-value=2e+02 Score=30.08 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=32.4
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCC
Q 013422 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (443)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGi 241 (443)
....+++|+|++-..+...++.|.+.|+. +..+.|++
T Consensus 243 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~g~~ 279 (434)
T PRK11192 243 PEVTRSIVFVRTRERVHELAGWLRKAGIN-CCYLEGEM 279 (434)
T ss_pred CCCCeEEEEeCChHHHHHHHHHHHhCCCC-EEEecCCC
Confidence 35678999999999999999999999984 77788888
No 148
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=21.03 E-value=1.6e+02 Score=31.06 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=32.6
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCCcEEEcCCCCc
Q 013422 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAE 242 (443)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~AAk~L~k~GFknVy~L~GGie 242 (443)
....+++|+|++-..+..+++.|.+.|+ ++..+-|++.
T Consensus 240 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~-~v~~~hg~~~ 277 (460)
T PRK11776 240 HQPESCVVFCNTKKECQEVADALNAQGF-SALALHGDLE 277 (460)
T ss_pred cCCCceEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence 3456899999999999999999999998 5777888884
No 149
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=20.41 E-value=2e+02 Score=29.65 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=31.9
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCC-cEEEcCCCC
Q 013422 204 PENTTLFILDKFDGNSELVAELVTINGFK-NAYTIKDGA 241 (443)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~AAk~L~k~GFk-nVy~L~GGi 241 (443)
..+.+++|+|++-.++...++.|++.|+. .++.+.|.+
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 35678999999999999999999998753 677788877
No 150
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=20.30 E-value=6e+02 Score=27.06 Aligned_cols=199 Identities=22% Similarity=0.275 Sum_probs=108.6
Q ss_pred CCCceEEeeCChh-hhhhcCCCCCCCCCCCcEEeccCCCCCch-hHHHHhhhcCCCC------CCeEEEEeCC----Chh
Q 013422 151 DASAQLLDIRAPV-EFRQVGSPDVRGLGKRPVSIVYKGDDKPG-FLKKLSLKFKEPE------NTTLFILDKF----DGN 218 (443)
Q Consensus 151 ~~~avLIDVRt~~-Efe~~Ghp~l~~~~kgAinIPl~~~~~~~-fl~eL~~~lk~~K------dk~IVV~C~s----G~R 218 (443)
.+.-+++|=|.+- -|+..|+-.+. |..-.|+..+.+.. -++.++.++..++ -+.+|++-+. |++
T Consensus 95 rg~eii~gd~~HI~~~E~gg~s~l~----gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~ 170 (384)
T KOG1368|consen 95 RGSEIIVGDRAHIHRYEQGGISQLA----GVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGK 170 (384)
T ss_pred CCceEEeccchheeehhccChhhhc----cceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCce
Confidence 4567888888764 46765554332 55555654311111 2445655553333 3567766554 323
Q ss_pred ------HHHHHHHHHHcCCCcEEEcCCCCcChhhHH---hCCCCccCCCCCccc---ccc-hhhHHhhhcccccC-chhh
Q 013422 219 ------SELVAELVTINGFKNAYTIKDGAEGPRGWM---NSGLPWIPPKKALGL---DLS-NLTETISGAIGEGS-EGFS 284 (443)
Q Consensus 219 ------S~~AAk~L~k~GFknVy~L~GGieG~~gW~---~aGLPvv~~~k~~sl---dl~-rqvr~iag~v~~~s-~~~P 284 (443)
-.++..+.+++|.+ .++ +|. +=|. +.|.|+.+..+.|+= =|+ .+.-=+ |.|.+|+ ++.-
T Consensus 171 vlPle~~~~v~~lak~~glk--LH~-DGA---Ri~NAavasgV~vk~i~~~fDSVsiCLSKglgAPV-GSViVG~k~FI~ 243 (384)
T KOG1368|consen 171 VLPLEELDRVKALAKRHGLK--LHM-DGA---RIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPV-GSVIVGSKDFID 243 (384)
T ss_pred EeeHHHHHHHHHHHhccCCe--eec-chh---hhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCc-ccEEEccHHHHH
Confidence 33667777888984 333 355 5554 558898876554421 000 000012 2233343 5567
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHhhhcchhhHHHHHHHHHH---------------Hhh-----ccc
Q 013422 285 VTLAIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDE---------------FLN-----TKV 344 (443)
Q Consensus 285 ~~~~laA~vG~Gl~a~s~~e~~lq~~gt~al~~~l~~kl~~~~~rk~t~~~~~~---------------~~~-----~~i 344 (443)
.++|+==+.|+|+=- ...|--.|.+++-.-+. +|.+.-.|.++|.+--+ +++ .++
T Consensus 244 kA~~~RKalGGGmRQ----sGvLaaaaLval~~~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~~~ 318 (384)
T KOG1368|consen 244 KARHFRKALGGGMRQ----SGVLAAAALVALDENVP-LLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQARL 318 (384)
T ss_pred HHHHHHHHhcCchhH----HHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHhccccceeeecchhhcceeeeecccccC
Confidence 788887777777511 00011112333444444 66666666666654321 223 678
Q ss_pred CchhhHHHHHhhccccccCCC
Q 013422 345 APKELADDIKQIGKTLLPSPA 365 (443)
Q Consensus 345 a~~~~~~~~~~~~~~ll~~~~ 365 (443)
.+.+|.+++++.|-.|.+...
T Consensus 319 ~~~~l~~~~~k~gi~lm~~~s 339 (384)
T KOG1368|consen 319 TAEELCKFLEKNGILLMGGAS 339 (384)
T ss_pred CHHHHHHHHHHCCeEEeeccc
Confidence 899999999999988887643
No 151
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=20.29 E-value=1.5e+02 Score=27.80 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=28.5
Q ss_pred CCCeEEEEe---CCChhHHHHHHHHHHcCCCcEEEc
Q 013422 205 ENTTLFILD---KFDGNSELVAELVTINGFKNAYTI 237 (443)
Q Consensus 205 Kdk~IVV~C---~sG~RS~~AAk~L~k~GFknVy~L 237 (443)
++++|+++| .+|.....+++.|.++|-..|+++
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 467899987 588999999999999999988875
Done!