BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013423
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 120/223 (53%), Gaps = 18/223 (8%)
Query: 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
+ L +LN + T S + AL+G+T L++L+ S +VTD +K L +++TLE+L +S
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSN-QVTD--LKPLANLTTLERLDIS 181
Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVL 208
++ I++L+ L NL L ++D+ L +LT L+ L L G+Q+ + G L
Sbjct: 182 SNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--L 235
Query: 209 KMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNL 268
L+ L+LA ++ L +S L L ++ + + +++ L L L L L
Sbjct: 236 ASLTNLTDLDLANNQISNLAPLSGLTKL-----TELKLGANQISNISPLAGLTALTNLEL 290
Query: 269 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 311
+ Q+ D + P+S K L +L+L +++D+S +SSL+KL
Sbjct: 291 NENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 329
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 102/233 (43%), Gaps = 46/233 (19%)
Query: 119 ELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD 178
+LD ++ G+K + + L L ++ + + + ++ L+NL+ L D
Sbjct: 39 DLDQVTTLQADRLGIKSIDGVEYLNNL--TQINFSNNQLTDITPLKNLTKL-------VD 89
Query: 179 LVLRSLQV--------LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNI 230
+++ + Q+ LT L L L+ +Q+++ LK L+ L L+ ++ + +
Sbjct: 90 ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL 147
Query: 231 SSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF----------- 279
S L L QQ+ ++ V L L NL LERL++ +VSD ++
Sbjct: 148 SGLTSL-----QQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 280 ---------PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 323
PL L LSL L D+ L+SL+ LT+L + + ++N
Sbjct: 203 TNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN 253
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 18/223 (8%)
Query: 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
+ L +LN + T S + AL+G+T L++L S +VTD +K L +++TLE+L +S
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSN-QVTD--LKPLANLTTLERLDIS 181
Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVL 208
++ I++L+ L NL L ++D+ L +LT L+ L L G+Q+ + G L
Sbjct: 182 SNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--L 235
Query: 209 KMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNL 268
L+ L+LA ++ L +S L L ++ + + +++ L L L L L
Sbjct: 236 ASLTNLTDLDLANNQISNLAPLSGLTKL-----TELKLGANQISNISPLAGLTALTNLEL 290
Query: 269 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 311
+ Q+ D + P+S K L +L+L +++D+S +SSL+KL
Sbjct: 291 NENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 329
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 29/157 (18%)
Query: 187 LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGA 246
LT L L L+ +Q+++ LK L+ L L+ ++ + +S L L QQ+
Sbjct: 106 LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSL-----QQLSF 158
Query: 247 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKE 286
++ V L L NL LERL++ +VSD ++ PL
Sbjct: 159 SSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 287 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 323
L LSL L D+ L+SL+ LT+L + + ++N
Sbjct: 219 LDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN 253
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 18/223 (8%)
Query: 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
+ L +LN + T S + AL+G+T L++L S +VTD +K L +++TLE+L +S
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSN-QVTD--LKPLANLTTLERLDIS 181
Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVL 208
++ I++L+ L NL L ++D+ L +LT L+ L L G+Q+ + G L
Sbjct: 182 SNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--L 235
Query: 209 KMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNL 268
L+ L+LA ++ L +S L L ++ + + +++ L L L L L
Sbjct: 236 ASLTNLTDLDLANNQISNLAPLSGLTKL-----TELKLGANQISNISPLAGLTALTNLEL 290
Query: 269 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 311
+ Q+ D + P+S K L +L+L +++D+S +SSL+KL
Sbjct: 291 NENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 329
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 29/157 (18%)
Query: 187 LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGA 246
LT L L L+ +Q+++ LK L+ L L+ ++ + +S L L QQ+
Sbjct: 106 LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSL-----QQLSF 158
Query: 247 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKE 286
++ V L L NL LERL++ +VSD ++ PL
Sbjct: 159 SSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 287 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 323
L LSL L D+ L+SL+ LT+L + + ++N
Sbjct: 219 LDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN 253
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 119/223 (53%), Gaps = 19/223 (8%)
Query: 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
+ L +LN + T S + AL+G+T L++L+ +VTD +K L +++TLE+L +S
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN--QVTD--LKPLANLTTLERLDIS 180
Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVL 208
++ I++L+ L NL L ++D+ L +LT L+ L L G+Q+ + G L
Sbjct: 181 SNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--L 234
Query: 209 KMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNL 268
L+ L+LA ++ L +S L L ++ + + +++ L L L L L
Sbjct: 235 ASLTNLTDLDLANNQISNLAPLSGLTKL-----TELKLGANQISNISPLAGLTALTNLEL 289
Query: 269 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 311
+ Q+ D + P+S K L +L+L +++D+S +SSL+KL
Sbjct: 290 NENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 328
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 157 IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA-AVLKMFPRLS 215
I L++L NL+ L L +TD+ L+ LT L L+L + +S+ A + L +L+
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLN 157
Query: 216 FLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 275
F N T + L N+++LE L++S ++ V ++ L L +LE L Q+SD
Sbjct: 158 FGN-QVTDLKPLANLTTLERLDIS--------SNKVSDISVLAKLTNLESLIATNNQISD 208
Query: 276 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 323
T PL L LSL L D+ L+SL+ LT+L + + ++N
Sbjct: 209 IT--PLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN 252
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 230 ISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 289
I +E LN + Q+ + + +T L+NL L + + Q++D T PL+ L
Sbjct: 56 IDGVEYLN--NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTG 111
Query: 290 LSLRNASLTDVS-LHQLSSLSKL 311
L+L N +TD+ L L++L++L
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRL 134
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 119/223 (53%), Gaps = 19/223 (8%)
Query: 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
+ L +LN + T S + AL+G+T L++L+ +VTD +K L +++TLE+L +S
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN--QVTD--LKPLANLTTLERLDIS 180
Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVL 208
++ I++L+ L NL L ++D+ L +LT L+ L L G+Q+ + G L
Sbjct: 181 SNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--L 234
Query: 209 KMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNL 268
L+ L+LA ++ L +S L L ++ + + +++ L L L L L
Sbjct: 235 ASLTNLTDLDLANNQISNLAPLSGLTKL-----TELKLGANQISNISPLAGLTALTNLEL 289
Query: 269 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 311
+ Q+ D + P+S K L +L+L +++D+S +SSL+KL
Sbjct: 290 NENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 328
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 157 IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA-AVLKMFPRLS 215
I L++L NL+ L L +TD+ L+ LT L L+L + +S+ A + L +L+
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLN 157
Query: 216 FLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 275
F N T + L N+++LE L++S ++ V ++ L L +LE L Q+SD
Sbjct: 158 FGN-QVTDLKPLANLTTLERLDIS--------SNKVSDISVLAKLTNLESLIATNNQISD 208
Query: 276 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 323
T PL L LSL L D+ L+SL+ LT+L + + ++N
Sbjct: 209 IT--PLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN 252
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 230 ISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 289
I +E LN + Q+ + + +T L+NL L + + Q++D T PL+ L
Sbjct: 56 IDGVEYLN--NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTG 111
Query: 290 LSLRNASLTDVS-LHQLSSLSKL 311
L+L N +TD+ L L++L++L
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRL 134
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 19/223 (8%)
Query: 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
+ L +LN + T S + AL+G+T L++L +VTD +K L +++TLE+L +S
Sbjct: 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN--QVTD--LKPLANLTTLERLDIS 185
Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVL 208
++ I++L+ L NL L ++D+ L +LT L+ L L G+Q+ + G L
Sbjct: 186 SNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--L 239
Query: 209 KMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNL 268
L+ L+LA ++ L +S L L ++ + + +++ L L L L L
Sbjct: 240 ASLTNLTDLDLANNQISNLAPLSGLTKL-----TELKLGANQISNISPLAGLTALTNLEL 294
Query: 269 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 311
+ Q+ D + P+S K L +L+L +++D+S +SSL+KL
Sbjct: 295 NENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 333
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 157 IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA-AVLKMFPRLS 215
I L++L NL+ L L +TD+ L+ LT L L+L + +S+ A + L +LS
Sbjct: 105 ITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 162
Query: 216 FLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 275
F N T + L N+++LE L++S ++ V ++ L L +LE L Q+SD
Sbjct: 163 FGN-QVTDLKPLANLTTLERLDIS--------SNKVSDISVLAKLTNLESLIATNNQISD 213
Query: 276 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 323
T PL L LSL L D+ L+SL+ LT+L + + ++N
Sbjct: 214 IT--PLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN 257
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 230 ISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 289
I +E LN + Q+ + + +T L+NL L + + Q++D T PL+ L
Sbjct: 61 IDGVEYLN--NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTG 116
Query: 290 LSLRNASLTDVS-LHQLSSLSKL 311
L+L N +TD+ L L++L++L
Sbjct: 117 LTLFNNQITDIDPLKNLTNLNRL 139
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 19/223 (8%)
Query: 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
+ L +LN + T S + AL+G+T L++L +VTD +K L +++TLE+L +S
Sbjct: 129 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN--QVTD--LKPLANLTTLERLDIS 184
Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVL 208
++ I++L+ L NL L ++D+ L +LT L+ L L G+Q+ + G L
Sbjct: 185 SNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--L 238
Query: 209 KMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNL 268
L+ L+LA ++ L +S L L ++ + + +++ L L L L L
Sbjct: 239 ASLTNLTDLDLANNQISNLAPLSGLTKL-----TELKLGANQISNISPLAGLTALTNLEL 293
Query: 269 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 311
+ Q+ D + P+S K L +L+L +++D+S +SSL+KL
Sbjct: 294 NENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 332
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 157 IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA-AVLKMFPRLS 215
I L++L NL+ L L +TD+ L+ LT L L+L + +S+ A + L +LS
Sbjct: 104 ITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 161
Query: 216 FLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 275
F N T + L N+++LE L++S ++ V ++ L L +LE L Q+SD
Sbjct: 162 FGN-QVTDLKPLANLTTLERLDIS--------SNKVSDISVLAKLTNLESLIATNNQISD 212
Query: 276 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 323
T PL L LSL L D+ L+SL+ LT+L + + ++N
Sbjct: 213 IT--PLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN 256
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 230 ISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 289
I +E LN + Q+ + + +T L+NL L + + Q++D T PL+ L
Sbjct: 60 IDGVEYLN--NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTG 115
Query: 290 LSLRNASLTDVS-LHQLSSLSKL 311
L+L N +TD+ L L++L++L
Sbjct: 116 LTLFNNQITDIDPLKNLTNLNRL 138
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 37/190 (19%)
Query: 155 DGIALLSS-------------LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS 201
DGIA LS+ L NL L+L +TDL L+ LTK+ L+L G+ +
Sbjct: 47 DGIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLT--PLKNLTKITELELSGNPLK 104
Query: 202 NRGA-AVLKMFPRLSFLNLAWTGVTKLPNISSLECL--------------NLSFIQQVGA 246
N A A L+ L + T VT L +S+L+ L L+ +Q +
Sbjct: 105 NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 164
Query: 247 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 306
+ V LT L NL+ L L + ++SD + PL++ LI + L++ ++DV S
Sbjct: 165 GNNQVNDLTPLANLSKLTTLRADDNKISD--ISPLASLPNLIEVHLKDNQISDV-----S 217
Query: 307 SLSKLTNLSI 316
L+ L+NL I
Sbjct: 218 PLANLSNLFI 227
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 27/172 (15%)
Query: 127 KVTD-AGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLV----L 181
++TD +K+L I+ LE +G ++ ++ LQ++ LDL +TD+ L
Sbjct: 80 QITDLTPLKNLTKITELEL-----SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 134
Query: 182 RSLQVLTKLEYLDLWGSQVSNRGA-AVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSF 240
+LQVL YLDL +Q++N A L LS N +T L N+S L L
Sbjct: 135 SNLQVL----YLDL--NQITNISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLR--- 185
Query: 241 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 292
A+ + + ++ L +L +L ++L+ Q+SD + PL+ L ++L
Sbjct: 186 -----ADDNKISDISPLASLPNLIEVHLKDNQISDVS--PLANLSNLFIVTL 230
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 34/197 (17%)
Query: 155 DGIALLSS-------------LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS 201
DGI LS+ L NL L+L +TDL L+ LTK+ L+L G+ +
Sbjct: 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK 98
Query: 202 NRGA-AVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSF-----IQQVGAETDL----- 250
N A A L+ L + T VT L +S+L+ L L I + T+L
Sbjct: 99 NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158
Query: 251 ----VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 306
V LT L NL+ L L + ++SD + PL++ LI + L+N ++DVS L+
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVS--PLA 214
Query: 307 SLSKLTNLSIRDAVLTN 323
+ S L +++ + +TN
Sbjct: 215 NTSNLFIVTLTNQTITN 231
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 108/216 (50%), Gaps = 36/216 (16%)
Query: 98 ADCRRVTSSALWALTGMTCLKELD-LSRCV-------KVTD-AGMKHLLSISTLEKLWLS 148
AD +T+ + + TG+T ++ + L+ + ++TD A +K+L I+ LE
Sbjct: 38 ADLDGITTLSAFG-TGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELEL---- 92
Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLV----LRSLQVLTKLEYLDLWGSQVSNRG 204
+G ++ ++ LQ++ LDL +TD+ L +LQVL YLDL +Q++N
Sbjct: 93 -SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL----YLDL--NQITNIS 145
Query: 205 A-AVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHL 263
A L LS N + +T L N+S L L A+ + + ++ L +L +L
Sbjct: 146 PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK--------ADDNKISDISPLASLPNL 197
Query: 264 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 299
++L+ Q+SD + PL+ L ++L N ++T+
Sbjct: 198 IEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 2/147 (1%)
Query: 172 GGLPVTDLVLRSLQVLTKLEYLDLWGSQV--SNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
G + DL R L+ L L+ LDL S + S+ LK L +LNL++ L +
Sbjct: 333 GNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLED 392
Query: 230 ISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 289
+ EC L + + + QNL+ L LNL + + L+ ++L H
Sbjct: 393 QAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRH 452
Query: 290 LSLRNASLTDVSLHQLSSLSKLTNLSI 316
L+L+ S D S+ + + L + +L I
Sbjct: 453 LNLQGNSFQDGSISKTNLLQMVGSLEI 479
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 96/238 (40%), Gaps = 43/238 (18%)
Query: 110 ALTGMTCLKELDLS-----RCVKVTDAGMKHLLSISTLEKLWLSETGLTAD-GIALLSSL 163
+ GM LK+L L+ + ++ A S +L L++ D G L L
Sbjct: 295 GIEGMNSLKKLVLNANSFDQLCQINAA------SFPSLRDLYIKGNMRKLDLGTRCLEKL 348
Query: 164 QNLSVLDLG--GLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221
+NL LDL + +D L+ L L+YL+L ++ K P+L L++A+
Sbjct: 349 ENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAF 408
Query: 222 TGV-TKLP-----NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 275
T + K P N+ L LNLS + L+ L L++LN L+ + + +S
Sbjct: 409 THLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLN-LQGNSFQDGSISK 467
Query: 276 ATLFPLSTFKELI----------------------HLSLRNASLTDVSLHQLSSLSKL 311
L + E++ HL L + SLT S+ LS L L
Sbjct: 468 TNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL 525
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 19/183 (10%)
Query: 156 GIALLSSLQNLSVLDLG--GLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPR 213
G L +L+NL LDL + +D L+ L+ L+ L+L ++ + K P+
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401
Query: 214 LSFLNLAWT------GVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNL----NHL 263
L L+LA+T + N+ L+ LNLS + L L ALQ+L NH
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Query: 264 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 323
+ N+++T L T L L L L+ + H +SL + ++ + LT+
Sbjct: 462 PKGNIQKTN-------SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514
Query: 324 SGL 326
S +
Sbjct: 515 SSI 517
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 38/133 (28%)
Query: 181 LRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSF 240
++ ++ LT LEYL+L G+Q+ T ++ L N+ L L
Sbjct: 59 IQGIEYLTNLEYLNLNGNQI---------------------TDISPLSNLVKLTNL---- 93
Query: 241 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 300
+G T+ + ++ALQNL +L L L + +SD + PL+ + L+L
Sbjct: 94 --YIG--TNKITDISALQNLTNLRELYLNEDNISDIS--PLANLTKXYSLNLG------- 140
Query: 301 SLHQLSSLSKLTN 313
+ H LS LS L+N
Sbjct: 141 ANHNLSDLSPLSN 153
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 120/270 (44%), Gaps = 38/270 (14%)
Query: 78 VDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLL 137
V E +A + YL +L + + + L+ + L L + K+TD + L
Sbjct: 51 VAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITD--ISALQ 107
Query: 138 SISTLEKLWLSETGLTADGIALLSSLQNLS---VLDLGG-LPVTDLVLRSLQVLTKLEYL 193
+++ L +L+L+E D I+ +S L NL+ L+LG ++DL L T L YL
Sbjct: 108 NLTNLRELYLNE-----DNISDISPLANLTKXYSLNLGANHNLSDL--SPLSNXTGLNYL 160
Query: 194 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLS 253
+ S+V + + L L+L + + + ++SL L+ F V TD+
Sbjct: 161 TVTESKV--KDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHY-FTAYVNQITDI--- 214
Query: 254 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL----------- 302
T + N L L + +++D L PL+ +L L + ++D++
Sbjct: 215 -TPVANXTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLN 271
Query: 303 ---HQLSSLSKLTNLS-IRDAVLTNSGLGS 328
+Q+S +S L NLS + L N+ LG+
Sbjct: 272 VGSNQISDISVLNNLSQLNSLFLNNNQLGN 301
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 114/270 (42%), Gaps = 35/270 (12%)
Query: 63 FKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKEL-- 120
+ N E + L G D ++ L L ++T + AL +T L+EL
Sbjct: 64 YLTNLEYLNLNGNQITDISPLSNLVKLTNLY----IGTNKITD--ISALQNLTNLRELYL 117
Query: 121 ------DLSRCVKVT-----DAGMKHLLS-ISTLEKL----WLSETGLTADGIALLSSLQ 164
D+S +T + G H LS +S L +L+ T + +++L
Sbjct: 118 NEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLT 177
Query: 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224
+L L L + D+ L LT L Y + +Q+++ + + LN G
Sbjct: 178 DLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITD-----ITPVANXTRLNSLKIGN 230
Query: 225 TKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF 284
K+ ++S L NLS + + T+ + + A+++L L+ LN+ Q+SD ++ L+
Sbjct: 231 NKITDLSPLA--NLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISV--LNNL 286
Query: 285 KELIHLSLRNASLTDVSLHQLSSLSKLTNL 314
+L L L N L + + L+ LT L
Sbjct: 287 SQLNSLFLNNNQLGNEDXEVIGGLTNLTTL 316
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 114/256 (44%), Gaps = 44/256 (17%)
Query: 112 TGMT-CLKELDLS--RCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSV 168
+G+T +K LDLS R ++++ ++ ++ L+ L L+ G+ SSL +L
Sbjct: 22 SGLTEAVKSLDLSNNRITYISNSDLQRCVN---LQALVLTSNGINTIEEDSFSSLGSLEH 78
Query: 169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTKL 227
LDL +++L + L+ L +L+L G+ G L F L+ L + G +
Sbjct: 79 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDTF 136
Query: 228 PNISSLECLNLSFIQQVGAE-TDL----VLSLTALQNLNHL------------------- 263
I + L+F++++ + +DL SL ++QN++HL
Sbjct: 137 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 196
Query: 264 --ERLNLEQTQVSDATLFPLSTFKE---LIHLSLRNASLTDVSLHQ----LSSLSKLTNL 314
E L L T + LST + + + RN +TD SL Q L+ +S L L
Sbjct: 197 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 256
Query: 315 SIRDAVLTNSGLGSFK 330
D L +G+G+F+
Sbjct: 257 EFDDCTL--NGVGNFR 270
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 93/217 (42%), Gaps = 33/217 (15%)
Query: 86 LGAFRYLRSLNVADCRR--VTSSALWALTGMTCLKELDL--SRCVKVTDAGMKHLLSIST 141
+ +F++LR L + R + + + A G+ L L+L +R + + +L S
Sbjct: 81 VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL---SK 137
Query: 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS 201
L++LWL + + + + +L LDLG L +L Y+
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL-------------KRLSYIS------- 177
Query: 202 NRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLN 261
GA + L +LNLA + ++PN++ L + L + G + + Q L
Sbjct: 178 -EGA--FEGLSNLRYLNLAMCNLREIPNLTPL--IKLDELDLSGNHLSAIRP-GSFQGLM 231
Query: 262 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 298
HL++L + Q+Q+ + L+ ++L + +LT
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNR 203
L LSE ++ D L NL L+L G + DL + L+ L L+ LDL+ +V+N
Sbjct: 74 LELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 133
Query: 204 GAA---VLKMFPRLSFLN 218
A V K+ P++ +L+
Sbjct: 134 NAYRENVFKLLPQVMYLD 151
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 110/259 (42%), Gaps = 42/259 (16%)
Query: 112 TGMTC-LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGL-TADGIALLSSLQNLSVL 169
+G+T +K LDLS K+T G L + + L+ L L + + T +G A S L +L L
Sbjct: 22 SGLTAAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS-LGSLEHL 79
Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL------NLAWTG 223
DL ++ L L+ L+YL+L G+ G V +FP L+ L N+
Sbjct: 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG--VTSLFPNLTNLQTLRIGNVETFS 137
Query: 224 VTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHL-------------------- 263
+ + + L LN I+ + SL ++++++HL
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197
Query: 264 -ERLNLEQTQVSDATLFPLSTFK---ELIHLSLRNASLTDVSLHQLSSLSK----LTNLS 315
L L T ++ PL + + L+ R + LTD S ++L L + L+ +
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257
Query: 316 IRDAVLTNSGLGSFKPPRS 334
D L +GLG F P S
Sbjct: 258 FDDCTL--NGLGDFNPSES 274
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 110/259 (42%), Gaps = 42/259 (16%)
Query: 112 TGMTC-LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGL-TADGIALLSSLQNLSVL 169
+G+T +K LDLS K+T G L + + L+ L L + + T +G A S L +L L
Sbjct: 48 SGLTAAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS-LGSLEHL 105
Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL------NLAWTG 223
DL ++ L L+ L+YL+L G+ G V +FP L+ L N+
Sbjct: 106 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG--VTSLFPNLTNLQTLRIGNVETFS 163
Query: 224 VTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHL-------------------- 263
+ + + L LN I+ + SL ++++++HL
Sbjct: 164 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 223
Query: 264 -ERLNLEQTQVSDATLFPLSTFK---ELIHLSLRNASLTDVSLHQLSSLSK----LTNLS 315
L L T ++ PL + + L+ R + LTD S ++L L + L+ +
Sbjct: 224 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 283
Query: 316 IRDAVLTNSGLGSFKPPRS 334
D L +GLG F P S
Sbjct: 284 FDDCTL--NGLGDFNPSES 300
>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
Length = 197
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 23/188 (12%)
Query: 76 NSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALT----GMTCLKELDLSRCVK---- 127
N D+ + AYL L + A+ ++L +T +T L ++ + +K
Sbjct: 16 NIPDSTFKAYLNGL--LGQSSTANITEAQXNSLTYITLANINVTDLTGIEYAHNIKDLTI 73
Query: 128 --VTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
+ + +S LE+L + +T+D I LS L +L++LD+ D +L +
Sbjct: 74 NNIHATNYNPISGLSNLERLRIXGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 186 VLTKLEYLDLWGSQVSNRGAAV----LKMFPRLSFLNLAWTGVTKLPNISSLECLN--LS 239
L K+ +DL S GA LK P L LN+ + GV I LN +
Sbjct: 134 TLPKVNSIDL-----SYNGAITDIXPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYA 188
Query: 240 FIQQVGAE 247
F Q +G +
Sbjct: 189 FSQTIGGK 196
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 107 ALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS-SL 163
+L L T L +L+L RC K+ G ++ L L LS L + + LL +L
Sbjct: 48 SLATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQS--LPLLGQTL 100
Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223
L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 101 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 160
Query: 224 VTKLPN--ISSLECLNLSFIQQ 243
+T+LP ++ LE L+ +Q+
Sbjct: 161 LTELPAGLLNGLENLDTLLLQE 182
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 107 ALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS-SL 163
+L L T L +L+L RC K+ G ++ L L LS L + + LL +L
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQS--LPLLGQTL 99
Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223
L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANND 159
Query: 224 VTKLPN--ISSLECLNLSFIQQ 243
+T+LP ++ LE L+ +Q+
Sbjct: 160 LTELPAGLLNGLENLDTLLLQE 181
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS 198
+ LE LW+++ L A I + L NL+ L L + L R LTKL YL L +
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 199 QVSNRGAAVLKMFPRLSFLNLAWTGVTKLP 228
++ + V L L L + ++P
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 107 ALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS-SL 163
+L L T L +L+L RC K+ G ++ L L LS L + + LL +L
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQS--LPLLGQTL 99
Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223
L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 224 VTKLPN--ISSLECLNLSFIQQ 243
+T+LP ++ LE L+ +Q+
Sbjct: 160 LTELPAGLLNGLENLDTLLLQE 181
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 107 ALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS-SL 163
+L L T L +L+L RC K+ G ++ L L LS L + + LL +L
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQS--LPLLGQTL 99
Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223
L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 224 VTKLPN--ISSLECLNLSFIQQ 243
+T+LP ++ LE L+ +Q+
Sbjct: 160 LTELPAGLLNGLENLDTLLLQE 181
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 107 ALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS-SL 163
+L L T L +L+L RC K+ G ++ L L LS L + + LL +L
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQS--LPLLGQTL 99
Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223
L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 224 VTKLPN--ISSLECLNLSFIQQ 243
+T+LP ++ LE L+ +Q+
Sbjct: 160 LTELPAGLLNGLENLDTLLLQE 181
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 16/136 (11%)
Query: 72 LRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDA 131
G+NS + + +A + F L+ L+++ + S L L +T L+EL ++R
Sbjct: 46 FNGDNS-NIQSLAGMQFFTNLKELHLSHNQ---ISDLSPLKDLTKLEELSVNR------N 95
Query: 132 GMKHLLSIST--LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTK 189
+K+L I + L +L+L L D +L+ L+NL +L + + +V+ L L+K
Sbjct: 96 RLKNLNGIPSACLSRLFLDNNEL-RDTDSLIH-LKNLEILSIRNNKLKSIVM--LGFLSK 151
Query: 190 LEYLDLWGSQVSNRGA 205
LE LDL G++++N G
Sbjct: 152 LEVLDLHGNEITNTGG 167
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 107 ALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS-SL 163
+L L T L +L+L RC K+ G ++ L L LS L + + LL +L
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQS--LPLLGQTL 99
Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223
L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 224 VTKLPN--ISSLECLNLSFIQQ 243
+T+LP ++ LE L+ +Q+
Sbjct: 160 LTELPAGLLNGLENLDTLLLQE 181
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 107 ALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS-SL 163
+L L T L +L+L RC K+ G ++ L L LS L + + LL +L
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQS--LPLLGQTL 99
Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223
L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 224 VTKLPN--ISSLECLNLSFIQQ 243
+T+LP ++ LE L+ +Q+
Sbjct: 160 LTELPAGLLNGLENLDTLLLQE 181
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221
+L L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 222 TGVTKLPN--ISSLECLNLSFIQQ 243
+T+LP ++ LE L+ +Q+
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQE 181
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 92 LRSLNVADC--RRVTSSALWALTGMTCLKELDL-SRCVKVTDAGMKHLLSISTLEKLWLS 148
L +L V D R+TS L AL G+ L+EL L +K G+ L LEKL L+
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLSLA 156
Query: 149 ETGLTADGIALLSSLQNLSVL 169
LT LL+ L+NL L
Sbjct: 157 NNNLTELPAGLLNGLENLDTL 177
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221
+L L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 222 TGVTKLPN--ISSLECLNLSFIQQ 243
+T+LP ++ LE L+ +Q+
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQE 181
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 92 LRSLNVADC--RRVTSSALWALTGMTCLKELDL-SRCVKVTDAGMKHLLSISTLEKLWLS 148
L +L V D R+TS L AL G+ L+EL L +K G+ L LEKL L+
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLSLA 156
Query: 149 ETGLTADGIALLSSLQNLSVL 169
LT LL+ L+NL L
Sbjct: 157 NNNLTELPAGLLNGLENLDTL 177
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRG- 204
LSE + L L NL+ L+L G + D+ L L+ L L+ LDL+ +V+N
Sbjct: 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Query: 205 --AAVLKMFPRLSFLN 218
+V K+ P+L++L+
Sbjct: 138 YRESVFKLLPQLTYLD 153
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221
+L L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 222 TGVTKLPN--ISSLECLNLSFIQQ 243
+T+LP ++ LE L+ +Q+
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQE 181
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 92 LRSLNVADC--RRVTSSALWALTGMTCLKELDL-SRCVKVTDAGMKHLLSISTLEKLWLS 148
L +L V D R+TS L AL G+ L+EL L +K G+ L LEKL L+
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLSLA 156
Query: 149 ETGLTADGIALLSSLQNLSVL 169
LT LL+ L+NL L
Sbjct: 157 NNNLTELPAGLLNGLENLDTL 177
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%)
Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
A TG+ L++LDLS ++ + L L L GL G L L L L
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN 202
L + L + + L L +L L G+++S+
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%)
Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
A TG+ L++LDLS ++ + L L L GL G L L L L
Sbjct: 74 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 133
Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN 202
L + L + + L L +L L G+++S+
Sbjct: 134 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 166
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV------SNRGAAV--LKMFPRL 214
L+NL++LDL + ++ L+ L KLE LDL + + +N G + LK L
Sbjct: 489 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 548
Query: 215 SFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQ---T 271
LNL G ++P + L I +G L + N L+ LNL++ T
Sbjct: 549 HILNLESNGFDEIPVEVFKDLFELKII-DLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 607
Query: 272 QVSDATLFPLSTFKELIHLSLR 293
V P F+ L L +R
Sbjct: 608 SVEKKVFGP--AFRNLTELDMR 627
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 91 YLRSLNVADCRRVT-----SSALW-----ALTGMTCLKELDLSRCVKVTDAGMKHLLSIS 140
Y+ + + CR +T S+AL A TG+T L++LDLS ++ +
Sbjct: 45 YVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLG 104
Query: 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV 200
L L L GL G L L L L L + L + + L L +L L G+++
Sbjct: 105 HLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV------SNRGAAV--LKMFPRL 214
L+NL++LDL + ++ L+ L KLE LDL + + +N G + LK L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538
Query: 215 SFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQ---T 271
LNL G ++P + L I +G L + N L+ LNL++ T
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKII-DLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597
Query: 272 QVSDATLFPLSTFKELIHLSLR 293
V P F+ L L +R
Sbjct: 598 SVEKKVFGP--AFRNLTELDMR 617
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 6/157 (3%)
Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL-WLSETGLTADGIALLSSLQNLSV 168
++T EL+ + ++ +K + I L + +L+ G I+ L L NL+
Sbjct: 30 SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTY 89
Query: 169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP 228
L L G + L LT L+ L L +Q+ + V L++LNLA + LP
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 229 -----NISSLECLNLSFIQQVGAETDLVLSLTALQNL 260
+++L L+LS+ Q + LT L++L
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV------SNRGAAV--LKMFPRL 214
L+NL++LDL + ++ L+ L KLE LDL + + +N G + LK L
Sbjct: 484 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 543
Query: 215 SFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQ---T 271
LNL G ++P + L I +G L + N L+ LNL++ T
Sbjct: 544 HILNLESNGFDEIPVEVFKDLFELKII-DLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 602
Query: 272 QVSDATLFPLSTFKELIHLSLR 293
V P F+ L L +R
Sbjct: 603 SVEKKVFGP--AFRNLTELDMR 622
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 38/230 (16%)
Query: 112 TGMT-CLKELDLS--RCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSV 168
+G+T +K LDLS R ++++ ++ ++ L+ L L+ G+ SSL +L
Sbjct: 48 SGLTEAVKSLDLSNNRITYISNSDLQRCVN---LQALVLTSNGINTIEEDSFSSLGSLEH 104
Query: 169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTKL 227
LDL +++L + L+ L +L+L G+ G L F L+ L + G +
Sbjct: 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDTF 162
Query: 228 PNISSLECLNLSFIQQVGAE-TDLV----LSLTALQNLNHL------------------- 263
I + L+F++++ + +DL SL ++QN++HL
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222
Query: 264 --ERLNLEQTQVSDATLFPLSTFKE---LIHLSLRNASLTDVSLHQLSSL 308
E L L T + LST + + + RN +TD SL Q+ L
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 11/153 (7%)
Query: 92 LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
LR L+++ + SA G+ L+ LD LS+ L L +S T
Sbjct: 378 LRHLDLSFNGAIIMSA--NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435
Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV-LTKLEYLDLWGSQVSNRGAAVLKM 210
D + L +L+ L + G D L ++ T L +LDL Q+ V
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495
Query: 211 FPRLSFLNLAWTGV--------TKLPNISSLEC 235
RL LN++ + +L ++S+L+C
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 11/153 (7%)
Query: 92 LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
LR L+++ + SA G+ L+ LD LS+ L L +S T
Sbjct: 373 LRHLDLSFNGAIIMSA--NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 430
Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV-LTKLEYLDLWGSQVSNRGAAVLKM 210
D + L +L+ L + G D L ++ T L +LDL Q+ V
Sbjct: 431 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 490
Query: 211 FPRLSFLNLAWTGV--------TKLPNISSLEC 235
RL LN++ + +L ++S+L+C
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 523
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 107/241 (44%), Gaps = 14/241 (5%)
Query: 92 LRSLNVADCRRVTSSALWALTGMTCLKELDLSRC-VKVTDAGMKHLLSISTLEKLWLSET 150
+ SLN+ + R + + T L+ELDL+ +K +GMK ++ L+KL LS
Sbjct: 253 VESLNLQE-HRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMK---GLNLLKKLVLSVN 308
Query: 151 GLTADGIALLSSLQNLSVLDL---GGLPVTDLVLRSLQVLTKLEYLDLWGSQV--SNRGA 205
D + +S+ S+ L G + L + L+ L L+ LDL + + S+ +
Sbjct: 309 HF--DQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCS 366
Query: 206 AVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLER 265
LK L LNL+ L + + EC L + + + QNL+ L+
Sbjct: 367 LQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQV 426
Query: 266 LNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 325
LNL + + L+ L HL+L+ D ++ + + L + +L + +L++ G
Sbjct: 427 LNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEV--LILSSCG 484
Query: 326 L 326
L
Sbjct: 485 L 485
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG 204
L+L + +T + SL NL L LG + L + LT+L LDL +Q++
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 205 AAVLKMFPRLSFLNLAWTGVTKLP 228
+AV L L + +T+LP
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTELP 128
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 96/246 (39%), Gaps = 34/246 (13%)
Query: 75 ENSVDAEWMAYLGAFRYLRSLNVADCRR--VTSSALWALTGMTCLKELDL-SRCVKVTDA 131
EN++ M FR+L L V R + + A G+ L L+L + V +
Sbjct: 84 ENNIQ---MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS 140
Query: 132 GMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLE 191
G LS L +LWL + + + + +L LDLG L KLE
Sbjct: 141 GAFEYLS--KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE-------------LKKLE 185
Query: 192 YLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLV 251
Y+ A +F L +LNL + +PN++ L + L ++ G +
Sbjct: 186 YIS---------EGAFEGLF-NLKYLNLGMCNIKDMPNLTPL--VGLEELEMSGNHFPEI 233
Query: 252 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 311
+ L+ L++L + +QVS L+ L+L + +L+ + + L L
Sbjct: 234 RP-GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292
Query: 312 TNLSIR 317
L +
Sbjct: 293 VELHLH 298
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 134 KHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 193
+HL + L++ + LT LL+ ++NLS L+L + ++ L LE +
Sbjct: 117 QHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRA-NIEEMPSHLFDDLENLESI 175
Query: 194 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
+ +++ + P+L LNLA + +P+
Sbjct: 176 EFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPD 211
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 14/156 (8%)
Query: 83 MAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTL 142
++LG R L L + + + S W G+ + E+ LS K + +L
Sbjct: 401 FSWLGQLRIL-DLGLNEIEQKLSGQEWR--GLRNIFEIYLSYN-KYLQLSTSSFALVPSL 456
Query: 143 EKLWLSETGLTADGIAL--LSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV 200
++L L L I+ L+NL++LDL + ++ L+ L LE LD + +
Sbjct: 457 QRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNL 516
Query: 201 ------SNRGAAV--LKMFPRLSFLNLAWTGVTKLP 228
+N G V LK L LNL G+ ++P
Sbjct: 517 ARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIP 552
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 13/162 (8%)
Query: 113 GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLT-ADGIALLSSLQNLSVLDL 171
G T LK LDLS +T + + L + LE L + L ++ SL+NL LD+
Sbjct: 371 GTTSLKYLDLSFNGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 172 GGLPVTDLVLRSLQVLTKLEYLDLWGSQV-SNRGAAVLKMFPRLSFLNLAWTGV-----T 225
L+ LE L + G+ N + L+FL+L+ + T
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 226 KLPNISSLECLNLSFIQQVGAETDLVLSLTALQ----NLNHL 263
++SSL+ LN+S +T L +LQ +LNH+
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,336,822
Number of Sequences: 62578
Number of extensions: 340309
Number of successful extensions: 957
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 189
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)