Query 013423
Match_columns 443
No_of_seqs 281 out of 4445
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 03:42:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.3E-35 1.4E-39 312.8 10.4 347 66-435 165-568 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-34 2.8E-39 310.4 11.7 328 84-435 230-592 (968)
3 KOG4194 Membrane glycoprotein 100.0 8.8E-30 1.9E-34 236.8 1.5 347 63-435 76-437 (873)
4 KOG4194 Membrane glycoprotein 99.9 2.7E-29 5.8E-34 233.6 -5.2 269 66-344 103-376 (873)
5 KOG0444 Cytoskeletal regulator 99.9 6.2E-27 1.4E-31 219.6 -2.5 334 66-428 8-353 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 4.4E-27 9.6E-32 220.6 -8.1 340 56-426 24-374 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.6E-26 3.5E-31 206.2 -11.2 374 25-428 94-542 (565)
8 cd00116 LRR_RI Leucine-rich re 99.8 5.2E-20 1.1E-24 172.9 19.2 155 69-225 2-178 (319)
9 KOG0472 Leucine-rich repeat pr 99.8 1.2E-23 2.6E-28 188.0 -12.0 281 25-324 12-312 (565)
10 KOG0618 Serine/threonine phosp 99.8 2.2E-22 4.7E-27 197.2 -8.4 374 24-435 47-474 (1081)
11 cd00116 LRR_RI Leucine-rich re 99.8 2.7E-18 6E-23 161.2 18.7 259 94-357 2-301 (319)
12 PLN03210 Resistant to P. syrin 99.8 7.6E-19 1.7E-23 189.6 15.1 270 56-347 580-883 (1153)
13 KOG4237 Extracellular matrix p 99.8 5.8E-21 1.3E-25 170.6 -3.1 278 64-348 66-361 (498)
14 PLN03210 Resistant to P. syrin 99.8 3.5E-18 7.6E-23 184.5 12.8 324 65-425 558-904 (1153)
15 KOG0618 Serine/threonine phosp 99.7 3.1E-20 6.7E-25 182.3 -5.3 194 140-344 219-441 (1081)
16 PRK15387 E3 ubiquitin-protein 99.7 1.1E-16 2.3E-21 161.6 11.4 211 91-344 202-413 (788)
17 PRK15387 E3 ubiquitin-protein 99.7 1.7E-16 3.6E-21 160.2 12.7 243 65-354 222-465 (788)
18 KOG4237 Extracellular matrix p 99.6 1.6E-17 3.4E-22 148.9 -1.7 249 90-345 67-334 (498)
19 KOG4341 F-box protein containi 99.6 4.7E-16 1E-20 140.6 6.4 305 65-373 138-466 (483)
20 PRK15370 E3 ubiquitin-protein 99.6 3.8E-15 8.3E-20 151.3 11.0 253 65-354 178-435 (754)
21 KOG1909 Ran GTPase-activating 99.6 1.2E-14 2.5E-19 128.8 10.1 268 80-362 20-328 (382)
22 PRK15370 E3 ubiquitin-protein 99.6 3.3E-15 7.3E-20 151.7 6.9 229 65-326 199-432 (754)
23 KOG1909 Ran GTPase-activating 99.5 8.2E-14 1.8E-18 123.5 10.9 181 65-246 30-256 (382)
24 KOG0617 Ras suppressor protein 99.3 5.1E-15 1.1E-19 118.1 -8.7 155 141-324 34-188 (264)
25 KOG0617 Ras suppressor protein 99.3 2.3E-14 4.9E-19 114.5 -7.3 154 162-345 31-185 (264)
26 KOG4341 F-box protein containi 99.2 8.6E-12 1.9E-16 113.3 5.2 279 59-341 158-460 (483)
27 KOG2120 SCF ubiquitin ligase, 99.2 4.4E-12 9.5E-17 110.3 2.6 195 164-364 185-392 (419)
28 KOG3207 Beta-tubulin folding c 99.2 1.6E-11 3.4E-16 112.2 2.9 210 87-298 118-339 (505)
29 KOG3207 Beta-tubulin folding c 99.1 3.4E-11 7.4E-16 110.1 2.1 203 66-275 122-340 (505)
30 KOG2120 SCF ubiquitin ligase, 99.0 1.9E-10 4E-15 100.3 3.6 156 66-222 186-348 (419)
31 PF14580 LRR_9: Leucine-rich r 99.0 2.8E-10 6E-15 94.9 3.9 103 260-364 41-145 (175)
32 PF14580 LRR_9: Leucine-rich r 99.0 6.1E-10 1.3E-14 92.8 4.7 125 138-269 17-148 (175)
33 COG4886 Leucine-rich repeat (L 98.9 1.9E-09 4.2E-14 104.3 5.9 194 119-327 97-295 (394)
34 KOG1259 Nischarin, modulator o 98.9 2.2E-10 4.9E-15 99.9 -1.6 127 188-324 284-414 (490)
35 COG5238 RNA1 Ran GTPase-activa 98.8 3.2E-08 6.8E-13 85.5 9.7 251 82-345 22-315 (388)
36 KOG4658 Apoptotic ATPase [Sign 98.8 2.9E-09 6.2E-14 110.6 4.0 253 66-324 546-809 (889)
37 COG4886 Leucine-rich repeat (L 98.8 5.7E-09 1.2E-13 101.0 5.4 189 143-345 96-289 (394)
38 COG5238 RNA1 Ran GTPase-activa 98.8 9.3E-09 2E-13 88.7 5.7 243 65-324 30-318 (388)
39 KOG1259 Nischarin, modulator o 98.8 9E-10 1.9E-14 96.2 -1.2 226 56-300 174-414 (490)
40 PF13855 LRR_8: Leucine rich r 98.7 6.9E-09 1.5E-13 71.0 1.9 60 285-344 1-60 (61)
41 KOG0532 Leucine-rich repeat (L 98.7 3.8E-10 8.3E-15 106.6 -6.0 165 146-324 81-249 (722)
42 PLN03150 hypothetical protein; 98.7 4.6E-08 9.9E-13 99.4 7.9 106 233-344 420-526 (623)
43 KOG0532 Leucine-rich repeat (L 98.7 6.7E-10 1.4E-14 105.0 -5.2 172 163-347 74-248 (722)
44 PF13855 LRR_8: Leucine rich r 98.6 1.2E-08 2.6E-13 69.8 1.7 61 261-321 1-61 (61)
45 KOG4658 Apoptotic ATPase [Sign 98.5 3.7E-08 8.1E-13 102.5 3.2 244 90-348 523-785 (889)
46 PLN03150 hypothetical protein; 98.5 1.2E-07 2.6E-12 96.3 6.6 104 141-244 419-528 (623)
47 KOG0531 Protein phosphatase 1, 98.5 9.8E-09 2.1E-13 99.6 -2.7 235 89-344 71-316 (414)
48 KOG0531 Protein phosphatase 1, 98.5 8.9E-09 1.9E-13 99.9 -3.2 238 66-325 73-321 (414)
49 KOG1947 Leucine rich repeat pr 98.5 2.6E-07 5.6E-12 92.0 7.0 256 84-357 182-451 (482)
50 KOG3665 ZYG-1-like serine/thre 98.4 4.1E-07 8.9E-12 92.4 7.4 137 66-205 123-267 (699)
51 KOG2982 Uncharacterized conser 98.3 2.1E-07 4.5E-12 81.6 2.2 84 113-198 69-156 (418)
52 KOG2982 Uncharacterized conser 98.2 1E-06 2.3E-11 77.3 4.5 198 88-293 69-287 (418)
53 KOG1859 Leucine-rich repeat pr 98.2 3.4E-08 7.3E-13 96.3 -6.1 124 141-274 165-292 (1096)
54 KOG3665 ZYG-1-like serine/thre 98.2 4E-06 8.6E-11 85.4 7.1 186 36-225 28-233 (699)
55 KOG1859 Leucine-rich repeat pr 98.1 1.5E-07 3.4E-12 91.8 -4.3 196 88-298 82-292 (1096)
56 KOG1947 Leucine rich repeat pr 98.0 6.4E-06 1.4E-10 82.0 4.6 219 113-357 186-425 (482)
57 PF12799 LRR_4: Leucine Rich r 97.8 4.1E-05 8.9E-10 47.9 4.1 38 286-324 2-39 (44)
58 PF12799 LRR_4: Leucine Rich r 97.7 4.8E-05 1E-09 47.6 3.7 38 189-227 2-39 (44)
59 PRK15386 type III secretion pr 97.7 0.00024 5.2E-09 67.1 9.9 142 132-295 44-187 (426)
60 KOG1644 U2-associated snRNP A' 97.6 0.0001 2.3E-09 61.4 4.8 105 232-344 43-151 (233)
61 PRK15386 type III secretion pr 97.5 0.00024 5.3E-09 67.0 7.0 134 110-271 47-187 (426)
62 KOG4579 Leucine-rich repeat (L 97.5 2.8E-05 6.1E-10 60.6 0.3 89 136-226 49-137 (177)
63 KOG2123 Uncharacterized conser 97.3 2E-05 4.3E-10 68.8 -2.2 99 164-267 19-123 (388)
64 KOG1644 U2-associated snRNP A' 97.3 0.00027 5.8E-09 59.1 4.1 38 138-175 62-99 (233)
65 KOG4579 Leucine-rich repeat (L 97.2 6.3E-05 1.4E-09 58.7 -0.7 84 261-345 27-112 (177)
66 KOG3864 Uncharacterized conser 97.2 0.0003 6.6E-09 58.8 3.0 82 67-149 103-185 (221)
67 KOG3864 Uncharacterized conser 97.1 0.00031 6.7E-09 58.7 2.6 103 262-364 102-209 (221)
68 PF13306 LRR_5: Leucine rich r 97.1 0.0003 6.5E-09 56.1 2.3 121 86-214 8-128 (129)
69 KOG4308 LRR-containing protein 97.1 4.9E-05 1.1E-09 74.2 -3.0 210 117-344 89-329 (478)
70 KOG2123 Uncharacterized conser 97.0 0.00023 5.1E-09 62.3 0.6 79 66-151 20-99 (388)
71 KOG2739 Leucine-rich acidic nu 96.9 0.00037 8.1E-09 60.7 1.5 102 211-318 42-152 (260)
72 KOG4308 LRR-containing protein 96.8 9.4E-05 2E-09 72.2 -3.5 194 142-357 89-313 (478)
73 PF13306 LRR_5: Leucine rich r 96.8 0.0022 4.8E-08 51.0 4.9 37 184-221 8-44 (129)
74 KOG2739 Leucine-rich acidic nu 96.4 0.0011 2.4E-08 57.8 1.0 63 282-344 62-127 (260)
75 smart00367 LRR_CC Leucine-rich 95.2 0.026 5.6E-07 30.6 2.9 25 332-356 1-25 (26)
76 PF13516 LRR_6: Leucine Rich r 93.1 0.083 1.8E-06 27.9 2.0 21 333-354 2-22 (24)
77 smart00367 LRR_CC Leucine-rich 92.9 0.16 3.5E-06 27.4 3.0 22 115-136 2-23 (26)
78 PF13516 LRR_6: Leucine Rich r 91.8 0.1 2.2E-06 27.5 1.3 15 286-300 3-17 (24)
79 PF00560 LRR_1: Leucine Rich R 91.7 0.12 2.7E-06 26.6 1.5 15 310-324 1-15 (22)
80 PF13504 LRR_7: Leucine rich r 90.4 0.21 4.6E-06 23.9 1.5 12 311-322 3-14 (17)
81 smart00368 LRR_RI Leucine rich 90.0 0.63 1.4E-05 25.6 3.4 24 333-357 2-25 (28)
82 smart00370 LRR Leucine-rich re 86.1 0.68 1.5E-05 24.8 1.9 19 309-327 2-20 (26)
83 smart00369 LRR_TYP Leucine-ric 86.1 0.68 1.5E-05 24.8 1.9 19 309-327 2-20 (26)
84 smart00365 LRR_SD22 Leucine-ri 72.4 4.1 8.9E-05 22.0 2.1 17 212-228 2-18 (26)
85 KOG3763 mRNA export factor TAP 66.9 7.3 0.00016 38.5 3.9 81 283-365 216-307 (585)
86 KOG0473 Leucine-rich repeat pr 63.7 0.24 5.3E-06 42.8 -5.8 91 256-350 37-127 (326)
87 smart00364 LRR_BAC Leucine-ric 52.9 11 0.00024 20.3 1.5 16 213-228 3-18 (26)
88 KOG3763 mRNA export factor TAP 49.6 19 0.00041 35.7 3.5 38 259-298 242-283 (585)
89 KOG4242 Predicted myosin-I-bin 36.4 70 0.0015 31.3 5.0 34 261-294 354-389 (553)
90 KOG0473 Leucine-rich repeat pr 32.1 0.89 1.9E-05 39.5 -7.3 19 181-199 104-122 (326)
91 PF07723 LRR_2: Leucine Rich R 28.2 43 0.00093 17.9 1.4 10 335-344 2-11 (26)
92 TIGR00864 PCC polycystin catio 22.5 56 0.0012 39.4 2.2 29 292-320 2-30 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.3e-35 Score=312.76 Aligned_cols=347 Identities=20% Similarity=0.166 Sum_probs=167.9
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEE
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 145 (443)
+|++|++++|. +....+..++.+++|++|++++|. +....+..+.++++|++|++++| .+++..+..+..+++|++|
T Consensus 165 ~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 165 SLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLGYN-NLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred CCCEEECccCc-ccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEEECcCC-ccCCcCChhHhcCCCCCEE
Confidence 56666666653 333444555556666666666555 43334445555555666666555 3443334455555555555
Q ss_pred EcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCC
Q 013423 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT 225 (443)
Q Consensus 146 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 225 (443)
++++|.+.+..|..++++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 55555555444555555555555555555555444444555555555555555555455555555555555555555443
Q ss_pred C-----CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCC------------------------Cch
Q 013423 226 K-----LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV------------------------SDA 276 (443)
Q Consensus 226 ~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l------------------------~~~ 276 (443)
+ +..+++|+.|++++|.+.+. +| ..+..+++|+.|++++|.+ .+.
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l~~~----~p--~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~ 395 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKFSGE----IP--KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCCcCc----CC--hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc
Confidence 2 22344444444444444322 22 2333333333333333333 333
Q ss_pred hhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCC-----------
Q 013423 277 TLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL----------- 345 (443)
Q Consensus 277 ~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~----------- 345 (443)
.|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+.
T Consensus 396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~ 475 (968)
T PLN00113 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK 475 (968)
T ss_pred CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccc
Confidence 333333344444444444444433333444444444444444444433333333333344443333331
Q ss_pred -----------CCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCCCCCCchhhhhhh------hhhcCCCCCCChhhHH
Q 013423 346 -----------LTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLD 408 (443)
Q Consensus 346 -----------l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~~~~l~~L------~n~l~~~~p~~~~~ld 408 (443)
++...+..+ ..++.++.. .+.+|.+.+.+|+.+..++.| +|.+++.+|..
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L-------~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----- 542 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKL-GSLSELMQL-------KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS----- 542 (968)
T ss_pred cceEEECcCCccCCccChhh-hhhhccCEE-------ECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh-----
Confidence 111111111 111222111 133455555666655555554 55666666666
Q ss_pred hhhhhcHHHHHHhhcccccccCCCCCc
Q 013423 409 QRLKYSREELLELQYSSLSLARPDDSS 435 (443)
Q Consensus 409 ~~~~l~~L~~L~l~~n~~~~~~p~~~~ 435 (443)
+..+++|+.||+++|.++|.+|....
T Consensus 543 -~~~l~~L~~L~Ls~N~l~~~~p~~l~ 568 (968)
T PLN00113 543 -FSEMPVLSQLDLSQNQLSGEIPKNLG 568 (968)
T ss_pred -HhCcccCCEEECCCCcccccCChhHh
Confidence 55677777777777777777776543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-34 Score=310.36 Aligned_cols=328 Identities=20% Similarity=0.180 Sum_probs=180.7
Q ss_pred HHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCC
Q 013423 84 AYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSL 163 (443)
Q Consensus 84 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 163 (443)
..++.+++|++|++++|. +....+..+.++++|++|++++| .+.+..+..+..+++|++|++++|.+.+..|..+.++
T Consensus 230 ~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred hhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence 333444444444444443 22223333344444444444443 2322223333444444444444444443333444444
Q ss_pred CCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCC-----CCCCCCCCEEec
Q 013423 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNL 238 (443)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~~~~L~~L~l 238 (443)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+ +..+++|+.|++
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 444444444444444334444444444444444444444444444444444444444444331 112233333333
Q ss_pred ccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccC------------------------CCCCCEEEeeC
Q 013423 239 SFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST------------------------FKELIHLSLRN 294 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~------------------------~~~L~~L~l~~ 294 (443)
.+|.+.+ .+| ..+..+++|+.|++++|.+++..|..+.. +++|+.|++++
T Consensus 388 ~~n~l~~----~~p--~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 388 FSNSLEG----EIP--KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred cCCEecc----cCC--HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 3333222 133 33444555555555555555444444444 44555555555
Q ss_pred CCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCC
Q 013423 295 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSD 374 (443)
Q Consensus 295 n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 374 (443)
|.+.+..|..+ ..++|+.|++++|++++..+..+..+++|+.|++++|. ++...+..+ ..++.++.. .+.
T Consensus 462 n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~-~~l~~L~~L-------~Ls 531 (968)
T PLN00113 462 NKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK-LSGEIPDEL-SSCKKLVSL-------DLS 531 (968)
T ss_pred ceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCc-ceeeCChHH-cCccCCCEE-------ECC
Confidence 55444444332 34567778888888877777777788999999999998 443333333 344555544 256
Q ss_pred CCCCCCCCCCchhhhhhh------hhhcCCCCCCChhhHHhhhhhcHHHHHHhhcccccccCCCCCc
Q 013423 375 QIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARPDDSS 435 (443)
Q Consensus 375 ~~~l~~~~p~~~~~l~~L------~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~n~~~~~~p~~~~ 435 (443)
+|.+.+.+|..+..+++| +|.+.+.+|.. +..+++|+.|++++|.+.|.+|....
T Consensus 532 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~------l~~l~~L~~l~ls~N~l~~~~p~~~~ 592 (968)
T PLN00113 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN------LGNVESLVQVNISHNHLHGSLPSTGA 592 (968)
T ss_pred CCcccccCChhHhCcccCCEEECCCCcccccCChh------HhcCcccCEEeccCCcceeeCCCcch
Confidence 899999999999888877 88999999998 66899999999999999999997654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=8.8e-30 Score=236.77 Aligned_cols=347 Identities=17% Similarity=0.180 Sum_probs=251.9
Q ss_pred hCCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhcc-CCCCCcEEecCCCCCCCHHHHHHhhCCCC
Q 013423 63 FKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLLSIST 141 (443)
Q Consensus 63 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~l~~ 141 (443)
+|...++|++++|. +...-+..|.++++|+++++..|. ++. .+ .++ ...+|+.|++.+| .++......+..++.
T Consensus 76 lp~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~-Lt~-IP-~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNE-LTR-IP-RFGHESGHLEKLDLRHN-LISSVTSEELSALPA 150 (873)
T ss_pred Cccceeeeeccccc-cccCcHHHHhcCCcceeeeeccch-hhh-cc-cccccccceeEEeeecc-ccccccHHHHHhHhh
Confidence 45568889999985 444445667889999999999987 654 23 344 4456999999998 677776777888888
Q ss_pred CcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCC
Q 013423 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221 (443)
Q Consensus 142 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 221 (443)
|+.||++.|.++...-..|..-.++++|++++|.++......|..+.+|..|.++.|.++..-+..|.++++|+.|++..
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 99999998888877666777778899999999988888777888888888888888888866677788888899998888
Q ss_pred CCCCC-----CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCC
Q 013423 222 TGVTK-----LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS 296 (443)
Q Consensus 222 ~~l~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~ 296 (443)
|.++- |..+++|+.|.+..|.+...++ ..|-.+.++++|+|+.|+++...-.++.++++|+.|+++.|.
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~D------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccccC------cceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 88764 5577788888888887664322 335567788888888888877666777788888888888888
Q ss_pred CChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCC
Q 013423 297 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQI 376 (443)
Q Consensus 297 i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 376 (443)
|..+-++..+-+++|++|+|++|+|+...+..|..+..|++|.++.|.+ + ...+.....+.+++.+ . +..|
T Consensus 305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi-~-~l~e~af~~lssL~~L-d------Lr~N 375 (873)
T KOG4194|consen 305 IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI-D-HLAEGAFVGLSSLHKL-D------LRSN 375 (873)
T ss_pred hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch-H-HHHhhHHHHhhhhhhh-c------CcCC
Confidence 7766666666678888888888888888777777777888888888874 2 2222222333333332 1 2234
Q ss_pred CCCCCCCC------chhhhhhh---hhhcCCCCCCChhhHHhhhhhcHHHHHHhhcccccccCCCCCc
Q 013423 377 GSNGPSPS------RTSLRASL---VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARPDDSS 435 (443)
Q Consensus 377 ~l~~~~p~------~~~~l~~L---~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~n~~~~~~p~~~~ 435 (443)
.+...+-+ .+..+++| +|++.. +|.-. +..++.||.||+.+|.|....|++-.
T Consensus 376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~-I~krA-----fsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS-IPKRA-----FSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred eEEEEEecchhhhccchhhhheeecCceeee-cchhh-----hccCcccceecCCCCcceeecccccc
Confidence 33322211 23344444 666663 56553 77899999999999999988776643
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.7e-29 Score=233.55 Aligned_cols=269 Identities=23% Similarity=0.269 Sum_probs=147.5
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEE
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 145 (443)
+|+++++.+|. -..+|.......+|+.|+|.+|. |+......++.++.|+.||++.| .++......|..-.++++|
T Consensus 103 nLq~v~l~~N~--Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 103 NLQEVNLNKNE--LTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred cceeeeeccch--hhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEE
Confidence 56666666663 23344433444556666666665 55555555666666666666665 4444333344444566666
Q ss_pred EcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCC
Q 013423 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT 225 (443)
Q Consensus 146 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 225 (443)
++++|+|+....+.|..+.+|.+|.++.|+++......|.+++.|+.|++..|.+...-...|.++++|+.|.+..|++.
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 66666666665566666666666666666666665556666666666666666554322344555666666666666555
Q ss_pred C-----CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChH
Q 013423 226 K-----LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 300 (443)
Q Consensus 226 ~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~ 300 (443)
. |-.+.+++.|+++.|++... .. .++.++..|+.|++++|.+....+..+..+++|++|+|+.|.++..
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~~v-----n~-g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQAV-----NE-GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred cccCcceeeecccceeecccchhhhh-----hc-ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 4 23455555555555554421 10 2334455555555555555554444455555555555555555544
Q ss_pred HHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCC
Q 013423 301 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 301 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 344 (443)
.+..|..+..|++|+|+.|+++......|..+++|++||++.|.
T Consensus 333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 44555555555555555555554444444444555555555554
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=6.2e-27 Score=219.63 Aligned_cols=334 Identities=17% Similarity=0.211 Sum_probs=241.9
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEE
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 145 (443)
-++.+|+++|.+..+.+|.....+.+++-|.|.... +.. .+..++.+.+|++|.+.+| .+... ...+..++.|+.+
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~-vPeEL~~lqkLEHLs~~HN-~L~~v-hGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQ-VPEELSRLQKLEHLSMAHN-QLISV-HGELSDLPRLRSV 83 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhh-ChHHHHHHhhhhhhhhhhh-hhHhh-hhhhccchhhHHH
Confidence 577888888876667788888888888888888876 544 5677888888888888888 45432 5567778888888
Q ss_pred EcccccCCHH-HHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCC
Q 013423 146 WLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (443)
Q Consensus 146 ~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 224 (443)
.+..|++... .|..+-.+..|..|+++.|++.+. |..+..-+++-.|++++|++.......|.+++-|-.|++++|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 8888877543 355666788888888888888775 77777778888888888888744444556888888888888888
Q ss_pred CCCC----CCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCC-CCchhhhcccCCCCCCEEEeeCCCCCh
Q 013423 225 TKLP----NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ-VSDATLFPLSTFKELIHLSLRNASLTD 299 (443)
Q Consensus 225 ~~l~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~n~i~~ 299 (443)
..+| .+.+|++|.+++|++.... +..+..+++|+.|.+++.+ -.+.+|..+..+.+|+.++++.|.+.
T Consensus 163 e~LPPQ~RRL~~LqtL~Ls~NPL~hfQ------LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp- 235 (1255)
T KOG0444|consen 163 EMLPPQIRRLSMLQTLKLSNNPLNHFQ------LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP- 235 (1255)
T ss_pred hhcCHHHHHHhhhhhhhcCCChhhHHH------HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-
Confidence 8766 4678888888888765321 2334456677778888753 33346777888888888888888886
Q ss_pred HHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCC
Q 013423 300 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSN 379 (443)
Q Consensus 300 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 379 (443)
..|+.+.++++|+.|++++|+|+.... ......+|+.|+++.|++.. .+..+++ .+.++-+ + .++|+++
T Consensus 236 ~vPecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~--LP~avcK-L~kL~kL-y------~n~NkL~ 304 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTV--LPDAVCK-LTKLTKL-Y------ANNNKLT 304 (1255)
T ss_pred cchHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhcc--chHHHhh-hHHHHHH-H------hccCccc
Confidence 577888888888888888888887633 22334578888888888422 3333333 2323322 1 2345554
Q ss_pred -CCCCCchhhhhhh-----hhhcCCCCCCChhhHHhhhhhcHHHHHHhhcccccc
Q 013423 380 -GPSPSRTSLRASL-----VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL 428 (443)
Q Consensus 380 -~~~p~~~~~l~~L-----~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~n~~~~ 428 (443)
.-+|+.|+++..| .|+....+|++ ++.|.+|++|.+++|++-.
T Consensus 305 FeGiPSGIGKL~~Levf~aanN~LElVPEg------lcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 305 FEGIPSGIGKLIQLEVFHAANNKLELVPEG------LCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred ccCCccchhhhhhhHHHHhhccccccCchh------hhhhHHHHHhcccccceee
Confidence 4488888888877 55666678888 7888889999988887643
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=4.4e-27 Score=220.62 Aligned_cols=340 Identities=19% Similarity=0.181 Sum_probs=263.2
Q ss_pred chhhHhhhCCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHH
Q 013423 56 FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKH 135 (443)
Q Consensus 56 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~ 135 (443)
+|....... +++.|.|.... -..+|+.++++.+|++|.+.+|+ +.. ....+..++.|+.+++.+|..-....+..
T Consensus 24 FP~~v~qMt-~~~WLkLnrt~--L~~vPeEL~~lqkLEHLs~~HN~-L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~d 98 (1255)
T KOG0444|consen 24 FPHDVEQMT-QMTWLKLNRTK--LEQVPEELSRLQKLEHLSMAHNQ-LIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTD 98 (1255)
T ss_pred CchhHHHhh-heeEEEechhh--hhhChHHHHHHhhhhhhhhhhhh-hHh-hhhhhccchhhHHHhhhccccccCCCCch
Confidence 333343343 58888887753 46788889999999999999998 443 45567789999999999884333334667
Q ss_pred hhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCC
Q 013423 136 LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS 215 (443)
Q Consensus 136 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 215 (443)
+..+..|+.|++++|++... |..+...+++-.|++++|++..+.-..+.++..|-.|++++|.+. .+|..+..+.+|+
T Consensus 99 iF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQ 176 (1255)
T ss_pred hcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhh
Confidence 88899999999999998774 778888899999999999988875556678889999999999886 6677788899999
Q ss_pred EEEcCCCCCC-----CCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEE
Q 013423 216 FLNLAWTGVT-----KLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHL 290 (443)
Q Consensus 216 ~L~l~~~~l~-----~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 290 (443)
+|.+++|.+. .+|.+++|+.|++++.+-+- ..+| ..+..+.+|..+|++.|.+.. .|..+..+++|+.|
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl---~N~P--tsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL---DNIP--TSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRL 250 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchh---hcCC--CchhhhhhhhhccccccCCCc-chHHHhhhhhhhee
Confidence 9999999765 47888889999998865432 2366 677888999999999999886 78888899999999
Q ss_pred EeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeeccc
Q 013423 291 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVI 370 (443)
Q Consensus 291 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~ 370 (443)
++++|+|+... ...+...+|+.|+++.|+++.. |..+.+++.|+.|.+.+|+ ++-++++.-....-++++++
T Consensus 251 NLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~----- 322 (1255)
T KOG0444|consen 251 NLSGNKITELN-MTEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFH----- 322 (1255)
T ss_pred ccCcCceeeee-ccHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCc-ccccCCccchhhhhhhHHHH-----
Confidence 99999987532 2345567899999999999966 7788889999999999998 55444444334444466552
Q ss_pred CCCCCCCCCCCCCCchhhhhhh------hhhcCCCCCCChhhHHhhhhhcHHHHHHhhcccc
Q 013423 371 CPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSL 426 (443)
Q Consensus 371 ~~~~~~~l~~~~p~~~~~l~~L------~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~n~~ 426 (443)
..+|.+ .-.|+.+..|..| .|++. ++|+. |.-++.|++||+..|+=
T Consensus 323 --aanN~L-ElVPEglcRC~kL~kL~L~~NrLi-TLPea------IHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 323 --AANNKL-ELVPEGLCRCVKLQKLKLDHNRLI-TLPEA------IHLLPDLKVLDLRENPN 374 (1255)
T ss_pred --hhcccc-ccCchhhhhhHHHHHhccccccee-echhh------hhhcCCcceeeccCCcC
Confidence 234444 5689999988877 55555 47888 66678899999999973
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=1.6e-26 Score=206.24 Aligned_cols=374 Identities=16% Similarity=0.161 Sum_probs=233.5
Q ss_pred HHHhhccccccccchHHHHHHHHHHHhcccc------chhhHhhhCCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeec
Q 013423 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLI------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVA 98 (443)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~ 98 (443)
..+..+.+.+..+|..+.. +..+.++.+. .++.+... ..++.++-.+|+ ...+|+.+..+.++..+++.
T Consensus 94 ~~l~vs~n~ls~lp~~i~s--~~~l~~l~~s~n~~~el~~~i~~~-~~l~dl~~~~N~--i~slp~~~~~~~~l~~l~~~ 168 (565)
T KOG0472|consen 94 KSLNVSHNKLSELPEQIGS--LISLVKLDCSSNELKELPDSIGRL-LDLEDLDATNNQ--ISSLPEDMVNLSKLSKLDLE 168 (565)
T ss_pred HHhhcccchHhhccHHHhh--hhhhhhhhccccceeecCchHHHH-hhhhhhhccccc--cccCchHHHHHHHHHHhhcc
Confidence 3444455556666666655 5555554443 23333322 246666666664 24556666777777777777
Q ss_pred CCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCCh
Q 013423 99 DCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD 178 (443)
Q Consensus 99 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 178 (443)
+|+ +....+..+. |+.|++||...| .++. .++.++.+.+|..|++..|++... | .|..+..|..++++.|.+.-
T Consensus 169 ~n~-l~~l~~~~i~-m~~L~~ld~~~N-~L~t-lP~~lg~l~~L~~LyL~~Nki~~l-P-ef~gcs~L~Elh~g~N~i~~ 242 (565)
T KOG0472|consen 169 GNK-LKALPENHIA-MKRLKHLDCNSN-LLET-LPPELGGLESLELLYLRRNKIRFL-P-EFPGCSLLKELHVGENQIEM 242 (565)
T ss_pred ccc-hhhCCHHHHH-HHHHHhcccchh-hhhc-CChhhcchhhhHHHHhhhcccccC-C-CCCccHHHHHHHhcccHHHh
Confidence 776 5554444444 777888887776 4443 366777788888888888877653 3 67777777888877777766
Q ss_pred hhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCC----CCCCCCEEecccccccCC--------
Q 013423 179 LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSFIQQVGA-------- 246 (443)
Q Consensus 179 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~----~~~~L~~L~l~~~~~~~~-------- 246 (443)
.......+++++..|++.+|.+. ..|..++.+++|..||+++|.+++++ ++ +|+.|.+.+|++.+.
T Consensus 243 lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~g 320 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKG 320 (565)
T ss_pred hHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHccc
Confidence 54445567888888888888886 66777888888888888888888744 55 777788887773221
Q ss_pred -------------------------chhhhh--hHHHhccCCCCCEEEcCCCCCCchhhhcccCC--CCCCEEEeeCCCC
Q 013423 247 -------------------------ETDLVL--SLTALQNLNHLERLNLEQTQVSDATLFPLSTF--KELIHLSLRNASL 297 (443)
Q Consensus 247 -------------------------~~~~~~--~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~--~~L~~L~l~~n~i 297 (443)
.....+ .++......+.+.|++++-++++.....|..- .-....++++|++
T Consensus 321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL 400 (565)
T KOG0472|consen 321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQL 400 (565)
T ss_pred HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchH
Confidence 000000 00112223345555555555554222222110 1133444444433
Q ss_pred C-----------------------hHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHH
Q 013423 298 T-----------------------DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF 354 (443)
Q Consensus 298 ~-----------------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~ 354 (443)
. +.+|..++.+++|..|++++|-+.+. |..+.....|+.|+++.|+. . ..+..
T Consensus 401 ~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~NrF-r--~lP~~ 476 (565)
T KOG0472|consen 401 CELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFNRF-R--MLPEC 476 (565)
T ss_pred hhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-chhhhhhhhhheeccccccc-c--cchHH
Confidence 2 34566778889999999999999877 66677777899999999974 2 22222
Q ss_pred HHhCCCceeeeeecccCCCCCCCCCCCCCCchhhhhhh-----hhhcCCCCCCChhhHHhhhhhcHHHHHHhhcccccc
Q 013423 355 CKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL-----VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL 428 (443)
Q Consensus 355 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~~~~l~~L-----~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~n~~~~ 428 (443)
+.....++.. ....|++...-|+.+.++.+| +|+=...+|.+ ++++.+|+.|++++|+|+.
T Consensus 477 ~y~lq~lEtl-------las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~------LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 477 LYELQTLETL-------LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI------LGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred HhhHHHHHHH-------HhccccccccChHHhhhhhhcceeccCCCchhhCChh------hccccceeEEEecCCccCC
Confidence 2222223332 123577776566668888877 33333468888 8899999999999999993
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.85 E-value=5.2e-20 Score=172.94 Aligned_cols=155 Identities=28% Similarity=0.272 Sum_probs=97.1
Q ss_pred EEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHH----hccCCCCCcEEecCCCCCCC------HHHHHHhhC
Q 013423 69 AIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALW----ALTGMTCLKELDLSRCVKVT------DAGMKHLLS 138 (443)
Q Consensus 69 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~l~------~~~~~~~~~ 138 (443)
.|+|+.+......+...+..+.+|++|++.++. +++.... .+...++|++++++++ .+. ......+..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHh
Confidence 356666654445566666667778888888887 6543322 3345677888888876 444 122344566
Q ss_pred CCCCcEEEcccccCCHHHHHHhcCC---CCCCEEEecCCCCChh----hHHhccCC-CCccEEEecCCCCCch----hhH
Q 013423 139 ISTLEKLWLSETGLTADGIALLSSL---QNLSVLDLGGLPVTDL----VLRSLQVL-TKLEYLDLWGSQVSNR----GAA 206 (443)
Q Consensus 139 l~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~l~~~~l~~~----~~~ 206 (443)
+++|++|++++|.+....+..+..+ ++|++|++++|.+.+. ....+..+ ++|+.|++++|.+++. ++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 7788888888887765444444433 4488888888877632 22334555 7788888888877632 333
Q ss_pred hhcCCCCCCEEEcCCCCCC
Q 013423 207 VLKMFPRLSFLNLAWTGVT 225 (443)
Q Consensus 207 ~l~~l~~L~~L~l~~~~l~ 225 (443)
.+..+++|+.|++++|.+.
T Consensus 160 ~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 160 ALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHhCCCcCEEECcCCCCc
Confidence 4455566777776666555
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=1.2e-23 Score=187.95 Aligned_cols=281 Identities=20% Similarity=0.215 Sum_probs=196.8
Q ss_pred HHHhhccccccccchHHHHHHHHHHHhcccc-----------------chhhHhhhCCCccEEEecCCCCCCHHHHHHhc
Q 013423 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLI-----------------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLG 87 (443)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~-----------------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 87 (443)
-.+.++++.++++|..+.+.....-+.-..+ +...+..+ ..+++|++.+|. -...+++++
T Consensus 12 g~lnlsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL-~~l~vl~~~~n~--l~~lp~aig 88 (565)
T KOG0472|consen 12 GSLNLSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNL-ACLTVLNVHDNK--LSQLPAAIG 88 (565)
T ss_pred cccccccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcc-cceeEEEeccch--hhhCCHHHH
Confidence 3566777888888887776321111110000 11122222 257777777774 245667777
Q ss_pred CCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCC
Q 013423 88 AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS 167 (443)
Q Consensus 88 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 167 (443)
.+..++.+++++|+ +.. .+..++....|..+++++| .+.. .+..++.+..++.++..+|++... |+.+.++.++.
T Consensus 89 ~l~~l~~l~vs~n~-ls~-lp~~i~s~~~l~~l~~s~n-~~~e-l~~~i~~~~~l~dl~~~~N~i~sl-p~~~~~~~~l~ 163 (565)
T KOG0472|consen 89 ELEALKSLNVSHNK-LSE-LPEQIGSLISLVKLDCSSN-ELKE-LPDSIGRLLDLEDLDATNNQISSL-PEDMVNLSKLS 163 (565)
T ss_pred HHHHHHHhhcccch-Hhh-ccHHHhhhhhhhhhhcccc-ceee-cCchHHHHhhhhhhhccccccccC-chHHHHHHHHH
Confidence 77777777777776 443 5566677778888888887 4443 256677777888888888887775 55666777888
Q ss_pred EEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCC---CCCCCCCCEEeccccccc
Q 013423 168 VLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK---LPNISSLECLNLSFIQQV 244 (443)
Q Consensus 168 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~---l~~~~~L~~L~l~~~~~~ 244 (443)
.+++.+|++....+..+. ++.|++++...|.+. .+|..++.+.+|..|++..|++.. |+.|..|++++++.|++.
T Consensus 164 ~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 164 KLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE 241 (565)
T ss_pred HhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH
Confidence 888888888776555444 888888888887765 678888888888888888888775 556777888888887765
Q ss_pred CCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCch
Q 013423 245 GAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 324 (443)
Q Consensus 245 ~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~ 324 (443)
.+|. .....++++..||+.+|++.+ .|..++.+.+|++|++++|.|++ .|-.++++ .|+.|.+-+|.+..+
T Consensus 242 -----~lpa-e~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 242 -----MLPA-EHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred -----hhHH-HHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHH
Confidence 3552 445678888888888888876 77778888888888888888874 55577777 888888888876544
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=2.2e-22 Score=197.20 Aligned_cols=374 Identities=19% Similarity=0.204 Sum_probs=180.0
Q ss_pred HHHHhhccccccccchHHHHHHHHHHHhcccc------chhhHhhhCCCccEEEecCCCCCCHHHHHHhcCCCCCcEEee
Q 013423 24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLI------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNV 97 (443)
Q Consensus 24 ~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L 97 (443)
+..+.++++.+..+|..+.. +.+|+.+++. .|..... ..+++++.|.+|. ....|..+..+++|+.|++
T Consensus 47 L~~l~lsnn~~~~fp~~it~--l~~L~~ln~s~n~i~~vp~s~~~-~~~l~~lnL~~n~--l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITL--LSHLRQLNLSRNYIRSVPSSCSN-MRNLQYLNLKNNR--LQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eEEeeccccccccCCchhhh--HHHHhhcccchhhHhhCchhhhh-hhcchhheeccch--hhcCchhHHhhhccccccc
Confidence 44556677777778877777 7777776653 3332222 2467777777763 4556667777777888888
Q ss_pred cCCCCCChHHHHhccCCCCCcEEecCCCC------------------CCCHHHHHHhhCCCCCcEEEcccccCCHHHHHH
Q 013423 98 ADCRRVTSSALWALTGMTCLKELDLSRCV------------------KVTDAGMKHLLSISTLEKLWLSETGLTADGIAL 159 (443)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------------------~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 159 (443)
++|. +.. .+..+..+..++.+..++|. .+.+.....+..+.+ .|++++|.+... .
T Consensus 122 S~N~-f~~-~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---d 194 (1081)
T KOG0618|consen 122 SFNH-FGP-IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---D 194 (1081)
T ss_pred chhc-cCC-CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---h
Confidence 7776 332 22223333333333333331 122222222223333 367777766522 1
Q ss_pred hcCCCCCCEEEecCCCCChhh------------------HHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCC
Q 013423 160 LSSLQNLSVLDLGGLPVTDLV------------------LRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221 (443)
Q Consensus 160 l~~l~~L~~L~l~~~~~~~~~------------------~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 221 (443)
+.++++|+.+....|.+.... ...-....+|++++++.+.+. .+|++++.+.+|+.++..+
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANH 273 (1081)
T ss_pred hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccc
Confidence 223333333333333222110 000012245666666666665 3456666666677776666
Q ss_pred CCCCCCC----CCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCC-CCCEEEeeCCC
Q 013423 222 TGVTKLP----NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK-ELIHLSLRNAS 296 (443)
Q Consensus 222 ~~l~~l~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~L~~L~l~~n~ 296 (443)
|.+..++ ...+|+.|.+..|.+. .+| +...+...|++|++..|++.......+.-.. +|+.|+.+.|.
T Consensus 274 N~l~~lp~ri~~~~~L~~l~~~~nel~-----yip--~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 274 NRLVALPLRISRITSLVSLSAAYNELE-----YIP--PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred hhHHhhHHHHhhhhhHHHHHhhhhhhh-----hCC--CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence 6665532 4455666666555443 244 4445566667777766666553332222111 13333333333
Q ss_pred CChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCC
Q 013423 297 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQI 376 (443)
Q Consensus 297 i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 376 (443)
+....--.=...+.|+.|++.+|++++.....+....+||.|+|+.|++- ..+......++.++.+ .+++|
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~LeeL-------~LSGN 417 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEEL-------NLSGN 417 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc--cCCHHHHhchHHhHHH-------hcccc
Confidence 22111000001234555555555555555555555555555555555431 1222222222222221 13344
Q ss_pred CCCCCCCCchhhhhhh------hhhcCCCCCCChhhHHhhhhhcHHHHHHhhcccccc-cCCCCCc
Q 013423 377 GSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL-ARPDDSS 435 (443)
Q Consensus 377 ~l~~~~p~~~~~l~~L------~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~n~~~~-~~p~~~~ 435 (443)
.+. .+|.++.++..| .|++. .+| . +.++++|+++|+|.|.++. .+|++..
T Consensus 418 kL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e------~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 418 KLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E------LAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred hhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h------hhhcCcceEEecccchhhhhhhhhhCC
Confidence 443 355555555544 23333 345 3 3367777777777776665 4444444
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=2.7e-18 Score=161.23 Aligned_cols=259 Identities=24% Similarity=0.224 Sum_probs=183.9
Q ss_pred EEeecCCCCCChH-HHHhccCCCCCcEEecCCCCCCCHHHHH----HhhCCCCCcEEEcccccCC------HHHHHHhcC
Q 013423 94 SLNVADCRRVTSS-ALWALTGMTCLKELDLSRCVKVTDAGMK----HLLSISTLEKLWLSETGLT------ADGIALLSS 162 (443)
Q Consensus 94 ~L~L~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~~~~----~~~~l~~L~~L~l~~~~~~------~~~~~~l~~ 162 (443)
.|+|.++. +++. ....+..+.+|++|++++| .+++.... .+...+.+++++++++.+. ...+..+..
T Consensus 2 ~l~L~~~~-l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGEL-LKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCc-ccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 46676666 5432 3334556778999999998 67554333 3446788999999998776 223456677
Q ss_pred CCCCCEEEecCCCCChhhHHhccCC---CCccEEEecCCCCCc----hhhHhhcCC-CCCCEEEcCCCCCCC--------
Q 013423 163 LQNLSVLDLGGLPVTDLVLRSLQVL---TKLEYLDLWGSQVSN----RGAAVLKMF-PRLSFLNLAWTGVTK-------- 226 (443)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~l~~----~~~~~l~~l-~~L~~L~l~~~~l~~-------- 226 (443)
+++|+.|++++|.+....+..+..+ ++|++|++++|.+.+ .+...+..+ ++|+.|++++|.++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 8999999999998875444445444 449999999998873 233445566 899999999998883
Q ss_pred -CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhh----cccCCCCCCEEEeeCCCCChHH
Q 013423 227 -LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF----PLSTFKELIHLSLRNASLTDVS 301 (443)
Q Consensus 227 -l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~L~l~~n~i~~~~ 301 (443)
+..+++|+.|++++|.+.+.....++ ..+...++|++|++++|.+++.... .+..+++|++|++++|.+++..
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~--~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALA--EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHH--HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence 45677899999999887754333344 4566678999999999988765433 3456788999999999888754
Q ss_pred HHHhc-----CCCCCCEEEecCcccCchhh----hhcCCCCCCCEEeccCCCCCCHHHHHHHHHh
Q 013423 302 LHQLS-----SLSKLTNLSIRDAVLTNSGL----GSFKPPRSLKLLDLHGGWLLTEDAILQFCKM 357 (443)
Q Consensus 302 ~~~l~-----~l~~L~~L~l~~n~i~~~~~----~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~ 357 (443)
+..+. ..+.|++|++++|.+++.+. ..+..+++|+++++++|. +++.....+++.
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~ 301 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAES 301 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHH
Confidence 44332 23789999999999875433 233455789999999998 676655555443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=7.6e-19 Score=189.56 Aligned_cols=270 Identities=19% Similarity=0.211 Sum_probs=159.4
Q ss_pred chhhHhhhCCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHH
Q 013423 56 FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKH 135 (443)
Q Consensus 56 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~ 135 (443)
+|..+..+|.+|+.|.+.++.. ..+|..+ ...+|++|++.++. +.. .+..+..+++|++|+++++..++. .+.
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f-~~~~L~~L~L~~s~-l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~--ip~ 652 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPL--RCMPSNF-RPENLVKLQMQGSK-LEK-LWDGVHSLTGLRNIDLRGSKNLKE--IPD 652 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCC--CCCCCcC-CccCCcEEECcCcc-ccc-cccccccCCCCCEEECCCCCCcCc--CCc
Confidence 4455666666788888887742 3333333 45778888888876 543 445566778888888887644443 234
Q ss_pred hhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCC
Q 013423 136 LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS 215 (443)
Q Consensus 136 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 215 (443)
+..+++|+.|++++|......|..+..+++|+.|++++|......|..+ .+++|+.|++++|.....+|. ...+|+
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~ 728 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNIS 728 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcC
Confidence 6677888888888776555556777778888888888765333334333 567777777777754333332 234566
Q ss_pred EEEcCCCCCCCCCC---C-------------------------------CCCCEEecccccccCCchhhhhhHHHhccCC
Q 013423 216 FLNLAWTGVTKLPN---I-------------------------------SSLECLNLSFIQQVGAETDLVLSLTALQNLN 261 (443)
Q Consensus 216 ~L~l~~~~l~~l~~---~-------------------------------~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~ 261 (443)
.|+++++.+..++. + ++|+.|++++|..... +| ..+..++
T Consensus 729 ~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~----lP--~si~~L~ 802 (1153)
T PLN03210 729 WLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE----LP--SSIQNLH 802 (1153)
T ss_pred eeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc----cC--hhhhCCC
Confidence 67776666555431 2 3455555555543322 45 4566666
Q ss_pred CCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEecc
Q 013423 262 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 341 (443)
Q Consensus 262 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~ 341 (443)
+|+.|++++|...+..|..+ .+++|+.|++++|......|. ..++|+.|++++|.++.. |..+..+++|+.|+++
T Consensus 803 ~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~ 877 (1153)
T PLN03210 803 KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMN 877 (1153)
T ss_pred CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECCCCCCccC-hHHHhcCCCCCEEECC
Confidence 67777776664333334332 455666666666542222221 124566666666666544 4455556666666666
Q ss_pred CCCCCC
Q 013423 342 GGWLLT 347 (443)
Q Consensus 342 ~n~~l~ 347 (443)
+|+.+.
T Consensus 878 ~C~~L~ 883 (1153)
T PLN03210 878 GCNNLQ 883 (1153)
T ss_pred CCCCcC
Confidence 665544
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=5.8e-21 Score=170.60 Aligned_cols=278 Identities=22% Similarity=0.204 Sum_probs=208.4
Q ss_pred CCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCc
Q 013423 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (443)
Q Consensus 64 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~ 143 (443)
|+..+.++|..|. ++.--+.+|+.+++||+|+|++|. |+.+.+++|.+++.|..|-+.++.++++..-..|.++..++
T Consensus 66 P~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CCcceEEEeccCC-cccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 4479999999985 444444678899999999999998 99999999999999998888884489988778899999999
Q ss_pred EEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCc------------hhhHhhcCC
Q 013423 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN------------RGAAVLKMF 211 (443)
Q Consensus 144 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~------------~~~~~l~~l 211 (443)
.|.+.-|++.-...+.|..++++..|.+..|.+....-..+..+.+++.+.+..|.+.. ..|..++..
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 99999898888878889999999999999888777655577888888888777665321 111112222
Q ss_pred CCCCEEEcCCCCCCCCCC---CCCCCEE--ecc-cccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCC
Q 013423 212 PRLSFLNLAWTGVTKLPN---ISSLECL--NLS-FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 285 (443)
Q Consensus 212 ~~L~~L~l~~~~l~~l~~---~~~L~~L--~l~-~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 285 (443)
+-.....+.+.++..+.. .-.++.+ .+. .+.... .-|. ..|+++++|+.|++++|++++....+|....
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~----~cP~-~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDS----ICPA-KCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCC----cChH-HHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 222222222222222111 0112222 111 111111 1232 5699999999999999999998899999999
Q ss_pred CCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCH
Q 013423 286 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE 348 (443)
Q Consensus 286 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~ 348 (443)
.+++|.+..|++...--..|.++..|+.|++.+|+|+...|..|....+|.+|++-.|+...+
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 999999999999877667889999999999999999999999999999999999998875444
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=3.5e-18 Score=184.49 Aligned_cols=324 Identities=19% Similarity=0.130 Sum_probs=194.8
Q ss_pred CCccEEEecCCCC-----CCHHHHHHhcCC-CCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhC
Q 013423 65 HNAEAIELRGENS-----VDAEWMAYLGAF-RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLS 138 (443)
Q Consensus 65 ~~L~~L~L~~~~~-----~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~ 138 (443)
++|+.|.+..+.. ....++..+..+ ++|+.|.+.++. +.. .+..+ .+.+|++|++.++ .+... +..+..
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~-lP~~f-~~~~L~~L~L~~s-~l~~L-~~~~~~ 632 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRC-MPSNF-RPENLVKLQMQGS-KLEKL-WDGVHS 632 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCC-CCCcC-CccCCcEEECcCc-ccccc-cccccc
Confidence 3577776654320 112233334443 347777777665 433 22223 4567777777776 45432 344556
Q ss_pred CCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEE
Q 013423 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218 (443)
Q Consensus 139 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 218 (443)
+++|+.|+++++......| .++.+++|++|++++|......|..+..+++|+.|++++|.....+|..+ ++++|+.|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 7777777777764333323 35667777777777765544456667777777777777764333455433 567777777
Q ss_pred cCCCC-CCCCCC-CCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCc-------hhhhcccCCCCCCE
Q 013423 219 LAWTG-VTKLPN-ISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-------ATLFPLSTFKELIH 289 (443)
Q Consensus 219 l~~~~-l~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~-------~~~~~l~~~~~L~~ 289 (443)
+++|. +..++. ..+|+.|++++|.+.. +| .. ..+++|+.|.+.++.... ..+.....+++|+.
T Consensus 711 Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~-----lP--~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 711 LSGCSRLKSFPDISTNISWLDLDETAIEE-----FP--SN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CCCCCCccccccccCCcCeeecCCCcccc-----cc--cc-ccccccccccccccchhhccccccccchhhhhccccchh
Confidence 77764 333432 3567777777776542 33 22 245667777766532111 11111234578999
Q ss_pred EEeeCCCCChHHHHHhcCCCCCCEEEecCcc-cCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeec
Q 013423 290 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAV-LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELS 368 (443)
Q Consensus 290 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~ 368 (443)
|++++|.....+|..+.++++|+.|++++|. ++.. |..+ .+++|+.|++++|..+.. +... .++++.+ +
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L-P~~~-~L~sL~~L~Ls~c~~L~~--~p~~---~~nL~~L-~-- 852 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL-PTGI-NLESLESLDLSGCSRLRT--FPDI---STNISDL-N-- 852 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee-CCCC-CccccCEEECCCCCcccc--cccc---ccccCEe-E--
Confidence 9999987666778888999999999999875 5543 4433 578899999999876541 1111 1223322 1
Q ss_pred ccCCCCCCCCCCCCCCchhhhhhh------h-hhcCCCCCCChhhHHhhhhhcHHHHHHhhccc
Q 013423 369 VICPSDQIGSNGPSPSRTSLRASL------V-KQKQDPMPMSHSFLDQRLKYSREELLELQYSS 425 (443)
Q Consensus 369 ~~~~~~~~~l~~~~p~~~~~l~~L------~-n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~n~ 425 (443)
+.+|.+. .+|.++..+++| + +++. .+|.. +..+++|+.+++++|.
T Consensus 853 ----Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~------~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 853 ----LSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLN------ISKLKHLETVDFSDCG 904 (1153)
T ss_pred ----CCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcc------cccccCCCeeecCCCc
Confidence 3466665 478787777776 2 3333 35555 4477888888888775
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=3.1e-20 Score=182.25 Aligned_cols=194 Identities=21% Similarity=0.233 Sum_probs=104.2
Q ss_pred CCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEc
Q 013423 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219 (443)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 219 (443)
++|+.|+.++|.++...+ .....+|++++++.+.++.. |.++..+.+|+.+...+|.+. ..|..+...++|+.+.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeecc--ccccccceeeecchhhhhcc-hHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence 455555555555442111 11235677777777776665 466677777777777777764 55666666677777777
Q ss_pred CCCCCCCCC----CCCCCCEEecccccccCCchhhhhhHHHhcc-------------------------CCCCCEEEcCC
Q 013423 220 AWTGVTKLP----NISSLECLNLSFIQQVGAETDLVLSLTALQN-------------------------LNHLERLNLEQ 270 (443)
Q Consensus 220 ~~~~l~~l~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~-------------------------~~~L~~L~l~~ 270 (443)
..|.++.++ ..+.|+.|++..|.+... |. ..+.. .+.|+.|.+.+
T Consensus 295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~l-----p~-~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPSL-----PD-NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred hhhhhhhCCCcccccceeeeeeehhcccccc-----ch-HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence 777666533 356677777777665432 21 11111 12344444555
Q ss_pred CCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCC
Q 013423 271 TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 271 ~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 344 (443)
|.+++.....+.++++|+.|++++|++.......+.+++.|++|++++|+++.. +..+..+..|++|...+|+
T Consensus 369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred CcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCCc
Confidence 555554444444555555555555554443334444455555555555555443 3444444455555554444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=1.1e-16 Score=161.62 Aligned_cols=211 Identities=23% Similarity=0.149 Sum_probs=115.7
Q ss_pred CCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEE
Q 013423 91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLD 170 (443)
Q Consensus 91 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 170 (443)
+-..|+++.+. ++. .+..+. ++|+.|++.+| .++.. + ..+++|++|++++|+++.. |. ..++|+.|+
T Consensus 202 ~~~~LdLs~~~-Lts-LP~~l~--~~L~~L~L~~N-~Lt~L-P---~lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESG-LTT-LPDCLP--AHITTLVIPDN-NLTSL-P---ALPPELRTLEVSGNQLTSL-PV---LPPGLLELS 268 (788)
T ss_pred CCcEEEcCCCC-CCc-CCcchh--cCCCEEEccCC-cCCCC-C---CCCCCCcEEEecCCccCcc-cC---cccccceee
Confidence 35556666665 443 222222 35666666666 45432 1 1245666666666666643 21 235666666
Q ss_pred ecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCC-CCCCEEecccccccCCchh
Q 013423 171 LGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNI-SSLECLNLSFIQQVGAETD 249 (443)
Q Consensus 171 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~L~~L~l~~~~~~~~~~~ 249 (443)
+++|.+... +. ..++|+.|++++|.++ .+|. ..++|+.|++++|.++.++.. .+|+.|++++|.+..
T Consensus 269 Ls~N~L~~L-p~---lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~---- 336 (788)
T PRK15387 269 IFSNPLTHL-PA---LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS---- 336 (788)
T ss_pred ccCCchhhh-hh---chhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCCCcccccccccccCcccc----
Confidence 666665543 22 1245666666666665 2332 235567777777766665532 356666666665543
Q ss_pred hhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhc
Q 013423 250 LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 329 (443)
Q Consensus 250 ~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l 329 (443)
+|. ...+|+.|++++|++++ .|.. .++|+.|++++|+++. +|.. ..+|+.|++++|.+++.+ ..
T Consensus 337 -LP~-----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP-~l- 400 (788)
T PRK15387 337 -LPT-----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLP-VL- 400 (788)
T ss_pred -ccc-----cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCC-Cc-
Confidence 331 11356777777776665 2221 2456667777776663 3322 245677777777766542 11
Q ss_pred CCCCCCCEEeccCCC
Q 013423 330 KPPRSLKLLDLHGGW 344 (443)
Q Consensus 330 ~~~~~L~~L~l~~n~ 344 (443)
.++|+.|++++|+
T Consensus 401 --~s~L~~LdLS~N~ 413 (788)
T PRK15387 401 --PSELKELMVSGNR 413 (788)
T ss_pred --ccCCCEEEccCCc
Confidence 2467777777776
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=1.7e-16 Score=160.23 Aligned_cols=243 Identities=21% Similarity=0.125 Sum_probs=173.7
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
.+++.|++.+|... .++. ..++|++|++++|. ++.. +. ..++|++|++++| .++.. +. ...+|+.
T Consensus 222 ~~L~~L~L~~N~Lt--~LP~---lp~~Lk~LdLs~N~-LtsL-P~---lp~sL~~L~Ls~N-~L~~L-p~---lp~~L~~ 286 (788)
T PRK15387 222 AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQ-LTSL-PV---LPPGLLELSIFSN-PLTHL-PA---LPSGLCK 286 (788)
T ss_pred cCCCEEEccCCcCC--CCCC---CCCCCcEEEecCCc-cCcc-cC---cccccceeeccCC-chhhh-hh---chhhcCE
Confidence 47888999888532 2332 25788999998886 6642 21 2468888999888 55542 21 2357888
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCC
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 224 (443)
|++++|+++.. |. ..++|+.|++++|.+... +. ...+|+.|.+.+|.+++ +|. ...+|+.|++++|.+
T Consensus 287 L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~L 354 (788)
T PRK15387 287 LWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQL 354 (788)
T ss_pred EECcCCccccc-cc---cccccceeECCCCccccC-CC---CcccccccccccCcccc-ccc---cccccceEecCCCcc
Confidence 88988888764 32 346799999999888764 32 23467788888888763 443 124789999999999
Q ss_pred CCCCC-CCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHH
Q 013423 225 TKLPN-ISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLH 303 (443)
Q Consensus 225 ~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~ 303 (443)
+.++. .++|+.|++++|.+.. +|. ...+|+.|++++|.+++ .|.. .++|+.|++++|+++. +|.
T Consensus 355 s~LP~lp~~L~~L~Ls~N~L~~-----LP~-----l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~ 419 (788)
T PRK15387 355 ASLPTLPSELYKLWAYNNRLTS-----LPA-----LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPM 419 (788)
T ss_pred CCCCCCCcccceehhhcccccc-----Ccc-----cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCc
Confidence 88774 3578889998887764 442 13578999999998886 4332 3679999999999875 343
Q ss_pred HhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHH
Q 013423 304 QLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF 354 (443)
Q Consensus 304 ~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~ 354 (443)
. ..+|+.|++++|+++.. |..+..+++|+.|++++|+ +++..+..+
T Consensus 420 l---~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~-Ls~~~~~~L 465 (788)
T PRK15387 420 L---PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNP-LSERTLQAL 465 (788)
T ss_pred c---hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCCC-CCchHHHHH
Confidence 2 35788899999999865 6677788899999999999 676666655
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=1.6e-17 Score=148.88 Aligned_cols=249 Identities=17% Similarity=0.147 Sum_probs=187.2
Q ss_pred CCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEccc-ccCCHHHHHHhcCCCCCCE
Q 013423 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSE-TGLTADGIALLSSLQNLSV 168 (443)
Q Consensus 90 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~ 168 (443)
+.-.+++|..|. |+..+..+|+.+++|+.||+++| .++.+.+.+|.+++.|..|-+.+ |+|+....+.|..+..++.
T Consensus 67 ~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCC-cccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 456789999998 88888889999999999999998 78888899999998888776666 8999887788999999999
Q ss_pred EEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEec----------
Q 013423 169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNL---------- 238 (443)
Q Consensus 169 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l---------- 238 (443)
|.+.-|++.-...+.|..++++..|.+.+|.+...--.+|..+..++.+.+..|.+....+++.+.....
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 9998888888878889999999999999988764333477788889999888887555444443332211
Q ss_pred -------ccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhh-cccCCCCCCEEEeeCCCCChHHHHHhcCCCC
Q 013423 239 -------SFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF-PLSTFKELIHLSLRNASLTDVSLHQLSSLSK 310 (443)
Q Consensus 239 -------~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~-~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~ 310 (443)
.+..+......++- .. ...+.+=-.+.+...+..|. .|..+++|++|++++|+++++-+.+|.....
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~--c~---~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFL--CS---LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred ecchHHHHHHHhcccchhhhh--hh---HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 11111111111111 11 11111111122333333333 4789999999999999999999999999999
Q ss_pred CCEEEecCcccCchhhhhcCCCCCCCEEeccCCCC
Q 013423 311 LTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 345 (443)
Q Consensus 311 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~ 345 (443)
+++|.+..|++..+....|..+..|+.|++++|++
T Consensus 300 l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 300 LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred hhhhhcCcchHHHHHHHhhhccccceeeeecCCee
Confidence 99999999999888778888999999999999984
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.62 E-value=4.7e-16 Score=140.56 Aligned_cols=305 Identities=24% Similarity=0.296 Sum_probs=215.0
Q ss_pred CCccEEEecCCCCCCHHHH-HHhcCCCCCcEEeecCCCCCChHHHHhcc-CCCCCcEEecCCCCCCCHHHHHHhh-CCCC
Q 013423 65 HNAEAIELRGENSVDAEWM-AYLGAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLL-SIST 141 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~-~l~~ 141 (443)
..++.|.++++..+...-. ....+||++++|.+.+|..+++.....++ .|++|++|++..|..+++.....+. .+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3578889988865544333 34467899999999999888887777777 6889999999988888887777665 7899
Q ss_pred CcEEEccccc-CCHHHHHHh-cCCCCCCEEEecCCCCCh-hhHH-hccCCCCccEEEecCCC-CCchhhHhh-cCCCCCC
Q 013423 142 LEKLWLSETG-LTADGIALL-SSLQNLSVLDLGGLPVTD-LVLR-SLQVLTKLEYLDLWGSQ-VSNRGAAVL-KMFPRLS 215 (443)
Q Consensus 142 L~~L~l~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~~~~-~~~~-~l~~l~~L~~L~l~~~~-l~~~~~~~l-~~l~~L~ 215 (443)
|++|+++.|. +.+.+...+ ..+..++.+...||.-.+ .... .-..+.-+..+++.+|. +++...-.+ ..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 9999988873 333333333 255667777666653221 1111 11334455666666663 554332222 3678889
Q ss_pred EEEcCCCCCC-C------CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchh-hhcc-cCCCC
Q 013423 216 FLNLAWTGVT-K------LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFPL-STFKE 286 (443)
Q Consensus 216 ~L~l~~~~l~-~------l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~-~~~l-~~~~~ 286 (443)
.+..+++.-. . -.++++|+.+-+..|+..+. ..+. ..-.+++.|+.+++.++...... ...+ .+++.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd--~~ft--~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD--RGFT--MLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh--hhhh--hhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 9988876533 2 23678999999999874322 1121 22356788999999998543222 3333 37899
Q ss_pred CCEEEeeCCC-CChHHHHHhc----CCCCCCEEEecCcc-cCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCC
Q 013423 287 LIHLSLRNAS-LTDVSLHQLS----SLSKLTNLSIRDAV-LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR 360 (443)
Q Consensus 287 L~~L~l~~n~-i~~~~~~~l~----~l~~L~~L~l~~n~-i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~ 360 (443)
|+.+.+++|. +++.....+. .+..|+.+.++++. +++...+.+..+++|+.+++.+|+.++.+.+..+..++|+
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence 9999999987 6766554544 45789999999997 7777778888999999999999999999999999999999
Q ss_pred ceeeeeecccCCC
Q 013423 361 IEVWHELSVICPS 373 (443)
Q Consensus 361 l~~~~~~~~~~~~ 373 (443)
++++.+++...+.
T Consensus 454 i~v~a~~a~~t~p 466 (483)
T KOG4341|consen 454 IKVHAYFAPVTPP 466 (483)
T ss_pred ceehhhccCCCCc
Confidence 9999887766553
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=3.8e-15 Score=151.28 Aligned_cols=253 Identities=18% Similarity=0.145 Sum_probs=178.9
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
.+.+.|+++++.. + .+|..+ .++|+.|++++|. ++.. +..+ .++|++|++++| .++.. +..+ ..+|+.
T Consensus 178 ~~~~~L~L~~~~L-t-sLP~~I--p~~L~~L~Ls~N~-LtsL-P~~l--~~nL~~L~Ls~N-~LtsL-P~~l--~~~L~~ 245 (754)
T PRK15370 178 NNKTELRLKILGL-T-TIPACI--PEQITTLILDNNE-LKSL-PENL--QGNIKTLYANSN-QLTSI-PATL--PDTIQE 245 (754)
T ss_pred cCceEEEeCCCCc-C-cCCccc--ccCCcEEEecCCC-CCcC-Chhh--ccCCCEEECCCC-ccccC-Chhh--hccccE
Confidence 4678899988742 2 344333 2579999999997 6653 3222 358999999998 56643 3333 357999
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCC
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 224 (443)
|++++|.+... |..+. .+|+.|++++|.+... |..+ .++|+.|++++|.++. +|..+. ++|+.|++++|.+
T Consensus 246 L~Ls~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 246 MELSINRITEL-PERLP--SALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSL 316 (754)
T ss_pred EECcCCccCcC-ChhHh--CCCCEEECcCCccCcc-cccc--CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcc
Confidence 99999988764 44433 5799999999988764 5444 3589999999998873 444332 4788999999998
Q ss_pred CCCC--CCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHH
Q 013423 225 TKLP--NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 302 (443)
Q Consensus 225 ~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~ 302 (443)
..++ ..++|+.|++++|.+.. +| ..+ .++|+.|++++|+++. .|..+ .++|+.|++++|+++.. |
T Consensus 317 t~LP~~l~~sL~~L~Ls~N~Lt~-----LP--~~l--~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~L-P 383 (754)
T PRK15370 317 TALPETLPPGLKTLEAGENALTS-----LP--ASL--PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNL-P 383 (754)
T ss_pred ccCCccccccceeccccCCcccc-----CC--hhh--cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCC-C
Confidence 8766 34689999999998764 44 222 2689999999998875 45444 36899999999998854 4
Q ss_pred HHhcCCCCCCEEEecCcccCchhh---hhcCCCCCCCEEeccCCCCCCHHHHHHH
Q 013423 303 HQLSSLSKLTNLSIRDAVLTNSGL---GSFKPPRSLKLLDLHGGWLLTEDAILQF 354 (443)
Q Consensus 303 ~~l~~l~~L~~L~l~~n~i~~~~~---~~l~~~~~L~~L~l~~n~~l~~~~~~~~ 354 (443)
..+. .+|+.|++++|+++..+. ......+++..|++.+|+ ++...+..+
T Consensus 384 ~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np-ls~~tl~~L 435 (754)
T PRK15370 384 ENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP-FSERTIQNM 435 (754)
T ss_pred HhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC-ccHHHHHHH
Confidence 3432 368999999999886521 223345788999999999 666555554
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.57 E-value=1.2e-14 Score=128.84 Aligned_cols=268 Identities=22% Similarity=0.217 Sum_probs=164.7
Q ss_pred HHHHHHhcCCCCCcEEeecCCCCCChHHHHh----ccCCCCCcEEecCCC--CCCCHHHHHH-------hhCCCCCcEEE
Q 013423 80 AEWMAYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRC--VKVTDAGMKH-------LLSISTLEKLW 146 (443)
Q Consensus 80 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~----l~~~~~L~~L~l~~~--~~l~~~~~~~-------~~~l~~L~~L~ 146 (443)
+.+.+.+.....++.+++++|. ++...... +.+.++|++.+++.- ..+.+..+.+ +..+++|+.++
T Consensus 20 ~~v~~~~~~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 20 KDVEEELEPMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred hhHHHHhcccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 3444555666777777777776 55433333 335567777776652 1122222222 23455666666
Q ss_pred cccccCCHHHHH----HhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCC
Q 013423 147 LSETGLTADGIA----LLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT 222 (443)
Q Consensus 147 l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 222 (443)
+++|-+....+. .++.+..|++|++.+|.+.......++. .|.++. .....+.-++|+.+..+.|
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRN 167 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeecc
Confidence 666655443332 2234555555555555554433222211 011110 1112234566777777777
Q ss_pred CCCC---------CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhh----cccCCCCCCE
Q 013423 223 GVTK---------LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF----PLSTFKELIH 289 (443)
Q Consensus 223 ~l~~---------l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~ 289 (443)
.+.. +...+.|+.+.++.|.+...+...+. ..+..|++|+.||+.+|.++..... .++.+++|+.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~--eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALA--EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHH--HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 7665 34567888888888877665443444 7788999999999999988765444 3567889999
Q ss_pred EEeeCCCCChHHHHHh-----cCCCCCCEEEecCcccCchhhhhc----CCCCCCCEEeccCCCCC--CHHHHHHHHHhC
Q 013423 290 LSLRNASLTDVSLHQL-----SSLSKLTNLSIRDAVLTNSGLGSF----KPPRSLKLLDLHGGWLL--TEDAILQFCKMH 358 (443)
Q Consensus 290 L~l~~n~i~~~~~~~l-----~~l~~L~~L~l~~n~i~~~~~~~l----~~~~~L~~L~l~~n~~l--~~~~~~~~~~~~ 358 (443)
|++++|.+...+...+ ...|+|++|.+.+|.|+......+ ...+.|..|++++|+ + .+..+..++..+
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~-l~e~de~i~ei~~~~ 324 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR-LGEKDEGIDEIASKF 324 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc-ccccchhHHHHHHhc
Confidence 9999998876544333 246899999999999887655333 345899999999998 5 556677776666
Q ss_pred CCce
Q 013423 359 PRIE 362 (443)
Q Consensus 359 ~~l~ 362 (443)
+...
T Consensus 325 ~~~~ 328 (382)
T KOG1909|consen 325 DTAH 328 (382)
T ss_pred cccc
Confidence 4433
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=3.3e-15 Score=151.70 Aligned_cols=229 Identities=17% Similarity=0.172 Sum_probs=169.2
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
.+++.|++++|.. . .++..+. ++|+.|++++|. ++.. +..+ .++|+.|++++| .+... +..+. .+|+.
T Consensus 199 ~~L~~L~Ls~N~L-t-sLP~~l~--~nL~~L~Ls~N~-LtsL-P~~l--~~~L~~L~Ls~N-~L~~L-P~~l~--s~L~~ 266 (754)
T PRK15370 199 EQITTLILDNNEL-K-SLPENLQ--GNIKTLYANSNQ-LTSI-PATL--PDTIQEMELSIN-RITEL-PERLP--SALQS 266 (754)
T ss_pred cCCcEEEecCCCC-C-cCChhhc--cCCCEEECCCCc-cccC-Chhh--hccccEEECcCC-ccCcC-ChhHh--CCCCE
Confidence 4799999999963 3 3454443 689999999997 6642 3222 357999999998 56643 33333 58999
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCC
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 224 (443)
|++++|++... |..+. ++|+.|++++|.++.. +..+ .++|+.|++++|.+.. +|..+ .++|+.|++++|.+
T Consensus 267 L~Ls~N~L~~L-P~~l~--~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L 337 (754)
T PRK15370 267 LDLFHNKISCL-PENLP--EELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENAL 337 (754)
T ss_pred EECcCCccCcc-ccccC--CCCcEEECCCCccccC-cccc--hhhHHHHHhcCCcccc-CCccc--cccceeccccCCcc
Confidence 99999998864 54443 5899999999998864 3333 2478999999998874 44433 36899999999999
Q ss_pred CCCCC--CCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChH--
Q 013423 225 TKLPN--ISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV-- 300 (443)
Q Consensus 225 ~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~-- 300 (443)
+.++. +++|+.|++++|.+.. +| ..+ .++|+.|++++|.++. .|..+. .+|+.|++++|+++..
T Consensus 338 t~LP~~l~~sL~~L~Ls~N~L~~-----LP--~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~LP~ 405 (754)
T PRK15370 338 TSLPASLPPELQVLDVSKNQITV-----LP--ETL--PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVRLPE 405 (754)
T ss_pred ccCChhhcCcccEEECCCCCCCc-----CC--hhh--cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcccCch
Confidence 88763 4689999999998763 44 323 2689999999999986 454443 3699999999998742
Q ss_pred -HHHHhcCCCCCCEEEecCcccCchhh
Q 013423 301 -SLHQLSSLSKLTNLSIRDAVLTNSGL 326 (443)
Q Consensus 301 -~~~~l~~l~~L~~L~l~~n~i~~~~~ 326 (443)
++.....++++..+++.+|.++....
T Consensus 406 sl~~~~~~~~~l~~L~L~~Npls~~tl 432 (754)
T PRK15370 406 SLPHFRGEGPQPTRIIVEYNPFSERTI 432 (754)
T ss_pred hHHHHhhcCCCccEEEeeCCCccHHHH
Confidence 34455567899999999999875433
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.52 E-value=8.2e-14 Score=123.53 Aligned_cols=181 Identities=25% Similarity=0.265 Sum_probs=112.1
Q ss_pred CCccEEEecCCCCCC---HHHHHHhcCCCCCcEEeecCCC--CCChHHHH-------hccCCCCCcEEecCCCCCCCHHH
Q 013423 65 HNAEAIELRGENSVD---AEWMAYLGAFRYLRSLNVADCR--RVTSSALW-------ALTGMTCLKELDLSRCVKVTDAG 132 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~---~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~~-------~l~~~~~L~~L~l~~~~~l~~~~ 132 (443)
..++.++|++|.+-+ ..+.+.+..-++|++-+++.-- ...+..+. ++..+++|++|+|+.| -+...+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-ccCccc
Confidence 479999999995322 2344556677889998888642 12233333 3457889999999998 565444
Q ss_pred HHH----hhCCCCCcEEEcccccCCHHHHHHhc-------------CCCCCCEEEecCCCCChh----hHHhccCCCCcc
Q 013423 133 MKH----LLSISTLEKLWLSETGLTADGIALLS-------------SLQNLSVLDLGGLPVTDL----VLRSLQVLTKLE 191 (443)
Q Consensus 133 ~~~----~~~l~~L~~L~l~~~~~~~~~~~~l~-------------~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~ 191 (443)
+.. +..+..|++|.+.+|.+.......++ .-+.|+.+..+.|.+... ....+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 444 44789999999999998775444322 346677777777665433 233445566777
Q ss_pred EEEecCCCCCch----hhHhhcCCCCCCEEEcCCCCCCC---------CCCCCCCCEEecccccccCC
Q 013423 192 YLDLWGSQVSNR----GAAVLKMFPRLSFLNLAWTGVTK---------LPNISSLECLNLSFIQQVGA 246 (443)
Q Consensus 192 ~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~l~~---------l~~~~~L~~L~l~~~~~~~~ 246 (443)
.+.+..|.+... ....+..+++|+.|++..|.++. ++.+++|+.|++++|.+.+.
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~ 256 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE 256 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence 777776655422 22344566666666666665553 33444444444444444433
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=5.1e-15 Score=118.10 Aligned_cols=155 Identities=24% Similarity=0.301 Sum_probs=73.3
Q ss_pred CCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcC
Q 013423 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220 (443)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 220 (443)
+++.|-+++|.++.. |..++.+.+|+.|++++|++.+. |..++.+++|++|+++-|.+. ..|..|+.++.|+.|++.
T Consensus 34 ~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhhhc-Chhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 334444444444432 23344444444454444444443 344445555555555544443 345555555555555555
Q ss_pred CCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChH
Q 013423 221 WTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 300 (443)
Q Consensus 221 ~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~ 300 (443)
+|.+..-. +| ..|..+..|+.|.+++|.+.- .|..++++++|+.|.+..|.+- .
T Consensus 111 ynnl~e~~----------------------lp--gnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll-~ 164 (264)
T KOG0617|consen 111 YNNLNENS----------------------LP--GNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLL-S 164 (264)
T ss_pred cccccccc----------------------CC--cchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchh-h
Confidence 55433200 11 122223334444555554432 4444555555555555555543 2
Q ss_pred HHHHhcCCCCCCEEEecCcccCch
Q 013423 301 SLHQLSSLSKLTNLSIRDAVLTNS 324 (443)
Q Consensus 301 ~~~~l~~l~~L~~L~l~~n~i~~~ 324 (443)
.|..++.+..|++|.+.+|+++..
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeec
Confidence 455555555666666666665544
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=2.3e-14 Score=114.45 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=120.0
Q ss_pred CCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccc
Q 013423 162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFI 241 (443)
Q Consensus 162 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~ 241 (443)
.+.+++.|.+++|+++.. +..+..+.+|+.|++.+|++. ..|..++.+++|+.|+++.|++..
T Consensus 31 ~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~--------------- 93 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI--------------- 93 (264)
T ss_pred chhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc---------------
Confidence 455666677777776664 455667777777777777765 566667777777777776665442
Q ss_pred cccCCchhhhhhHHHhccCCCCCEEEcCCCCCCch-hhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcc
Q 013423 242 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA-TLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 320 (443)
Q Consensus 242 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 320 (443)
+| ..|+.++.|+.||+.+|++.+. .|..|..+..|+-|.++.|.+. .+|..++++++|+.|.+.+|.
T Consensus 94 ---------lp--rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 94 ---------LP--RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred ---------Cc--cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 34 6788889999999999988764 5667888899999999999986 677788999999999999999
Q ss_pred cCchhhhhcCCCCCCCEEeccCCCC
Q 013423 321 LTNSGLGSFKPPRSLKLLDLHGGWL 345 (443)
Q Consensus 321 i~~~~~~~l~~~~~L~~L~l~~n~~ 345 (443)
+-.. |..++.+..|++|.+.+|+.
T Consensus 162 ll~l-pkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 162 LLSL-PKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hhhC-cHHHHHHHHHHHHhccccee
Confidence 7755 77788889999999999984
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.23 E-value=8.6e-12 Score=113.34 Aligned_cols=279 Identities=24% Similarity=0.259 Sum_probs=197.9
Q ss_pred hHhhhCCCccEEEecCCCCCCHHHHHHh-cCCCCCcEEeecCCCCCChHHHHhcc-CCCCCcEEecCCCCCCCHHHHHHh
Q 013423 59 LLEVFKHNAEAIELRGENSVDAEWMAYL-GAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHL 136 (443)
Q Consensus 59 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~ 136 (443)
.+...|++++.|++.+|..+++.....+ ..|++|+.|++..|..+++.....++ .|++|++++++.|..+.+.....+
T Consensus 158 t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 158 TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 4566688999999999987776655555 56999999999999888988888666 799999999999987776555544
Q ss_pred -hCCCCCcEEEcccccCC-HHHHHHhc-CCCCCCEEEecCC-CCChhhHHhc-cCCCCccEEEecCCC-CCchhhHhhc-
Q 013423 137 -LSISTLEKLWLSETGLT-ADGIALLS-SLQNLSVLDLGGL-PVTDLVLRSL-QVLTKLEYLDLWGSQ-VSNRGAAVLK- 209 (443)
Q Consensus 137 -~~l~~L~~L~l~~~~~~-~~~~~~l~-~l~~L~~L~l~~~-~~~~~~~~~l-~~l~~L~~L~l~~~~-l~~~~~~~l~- 209 (443)
.++..++.+..++|.=. ......+. .+.-+.++++..| .+++.....+ ..+..|+.+..+++. +++....+++
T Consensus 238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 37777888877776322 22222222 4455666665555 3454432222 346678999888874 4444334444
Q ss_pred CCCCCCEEEcCCCC-CCC-----CC-CCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCC-CCCchhhhcc
Q 013423 210 MFPRLSFLNLAWTG-VTK-----LP-NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQT-QVSDATLFPL 281 (443)
Q Consensus 210 ~l~~L~~L~l~~~~-l~~-----l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~-~l~~~~~~~l 281 (443)
+.++|+.+.+..++ ++. ++ +++.|+.+++..+....+. .+- ..-..++.|+.+.+++| .++++....+
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~--sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLA--SLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHh--hhccCCchhccCChhhhhhhhhhhhhhh
Confidence 78999999998886 332 33 6889999999998765431 222 44567899999999998 4666544444
Q ss_pred c----CCCCCCEEEeeCCC-CChHHHHHhcCCCCCCEEEecCcc-cCchhhhhcC-CCCCCCEEecc
Q 013423 282 S----TFKELIHLSLRNAS-LTDVSLHQLSSLSKLTNLSIRDAV-LTNSGLGSFK-PPRSLKLLDLH 341 (443)
Q Consensus 282 ~----~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~l~-~~~~L~~L~l~ 341 (443)
. ....|+.+.++++. +++...+.+..+++|+.+++-.++ ++......+. .+|+++..-+.
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 3 45789999999997 667777888899999999999986 6666665555 56777665443
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=4.4e-12 Score=110.26 Aligned_cols=195 Identities=24% Similarity=0.281 Sum_probs=145.6
Q ss_pred CCCCEEEecCCCCChhhH-HhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCC-CCCC------CCCCCCCCE
Q 013423 164 QNLSVLDLGGLPVTDLVL-RSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT-GVTK------LPNISSLEC 235 (443)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~-~l~~------l~~~~~L~~ 235 (443)
..++++|++...++.... ..++.|..|+.|++.++.+.+.+...++.-.+|+.++++.+ ++++ +.+|+.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 458888888877775433 34577888888888888888888888888888999988875 4655 557889999
Q ss_pred EecccccccCCchhhhhhHHHhccCCCCCEEEcCCC--CCCchhhhcc-cCCCCCCEEEeeCCC-CChHHHHHhcCCCCC
Q 013423 236 LNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQT--QVSDATLFPL-STFKELIHLSLRNAS-LTDVSLHQLSSLSKL 311 (443)
Q Consensus 236 L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~--~l~~~~~~~l-~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L 311 (443)
|++++|....+....+ .-.--++|+.|+++|+ .+.......+ ..+++|.+|+++.|- ++......|.+++-|
T Consensus 265 LNlsWc~l~~~~Vtv~----V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVA----VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred cCchHhhccchhhhHH----HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 9999987765421111 1123367899999997 3444444443 489999999999875 777677788899999
Q ss_pred CEEEecCccc-CchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCceee
Q 013423 312 TNLSIRDAVL-TNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW 364 (443)
Q Consensus 312 ~~L~l~~n~i-~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~ 364 (443)
++|.++.|+. -....-.+...|+|.+|++.+|- +|...+-+.+.+|++++.
T Consensus 341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v--sdt~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV--SDTTMELLKEMLSHLKIN 392 (419)
T ss_pred eeeehhhhcCCChHHeeeeccCcceEEEEecccc--CchHHHHHHHhCcccccc
Confidence 9999999973 32223345567999999999994 577888888999988874
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.6e-11 Score=112.25 Aligned_cols=210 Identities=23% Similarity=0.226 Sum_probs=110.1
Q ss_pred cCCCCCcEEeecCCCCCChHHH-HhccCCCCCcEEecCCCCCCCH-HHHHHh-hCCCCCcEEEcccccCCHHHHHHh-cC
Q 013423 87 GAFRYLRSLNVADCRRVTSSAL-WALTGMTCLKELDLSRCVKVTD-AGMKHL-LSISTLEKLWLSETGLTADGIALL-SS 162 (443)
Q Consensus 87 ~~~~~L~~L~L~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~-~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l-~~ 162 (443)
.++.+|++..|.++. +...+. .....|++++.||+++| -+.. .....| ..+|+|+.|+++.|.+........ ..
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 456777777777776 554333 24456788888888876 3432 222223 367788888887776543211111 14
Q ss_pred CCCCCEEEecCCCCChhh-HHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCC------CCCCCCCE
Q 013423 163 LQNLSVLDLGGLPVTDLV-LRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL------PNISSLEC 235 (443)
Q Consensus 163 l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l------~~~~~L~~ 235 (443)
++.|+.|.++.|.++... ...+..+|+|+.|++..|............+..|+.|++++|.+-++ ..++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 566777777777766432 22335567777777777642222222333455677777777665542 34555666
Q ss_pred EecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCch-hhhcccCCCCCCEEEeeCCCCC
Q 013423 236 LNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA-TLFPLSTFKELIHLSLRNASLT 298 (443)
Q Consensus 236 L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~n~i~ 298 (443)
|.++.+.+.....-...........++|+.|++..|++.+- ....+..+++|+.|.+..|.++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 66665554321100000011233445566666666655330 1112333455555555555443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.4e-11 Score=110.06 Aligned_cols=203 Identities=24% Similarity=0.301 Sum_probs=98.9
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCCh--HHHHhccCCCCCcEEecCCCCCCCHHH-HHHhhCCCCC
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTS--SALWALTGMTCLKELDLSRCVKVTDAG-MKHLLSISTL 142 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L 142 (443)
+|+++.|.++.............|++++.|+|++|= +.. ........+|+|+.|+++.| .+.... ...-..+++|
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSHL 199 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhhh
Confidence 355555555532211111334455666666666653 221 11112225566666666655 222110 0111134566
Q ss_pred cEEEcccccCCHHHHH-HhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCc-hhhHhhcCCCCCCEEEcC
Q 013423 143 EKLWLSETGLTADGIA-LLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLA 220 (443)
Q Consensus 143 ~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~ 220 (443)
+.|.++.|+++..... ....+|+|+.|++.+|............++.|+.|++++|.+.. ......+.++.|..|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 6666666666543333 22355666666666653211111222334556666666665431 112344556666666666
Q ss_pred CCCCCCCC-----------CCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCc
Q 013423 221 WTGVTKLP-----------NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 275 (443)
Q Consensus 221 ~~~l~~l~-----------~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~ 275 (443)
.+++++++ ..++|++|++..|++.. .+++..+..+.+|+.|.+..+.++.
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-----w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-----WRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCcccc-----ccccchhhccchhhhhhcccccccc
Confidence 66655521 34567777777776642 2333455556667777766665543
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.9e-10 Score=100.30 Aligned_cols=156 Identities=21% Similarity=0.237 Sum_probs=79.5
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHH-hhCCCCCcE
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKH-LLSISTLEK 144 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~-~~~l~~L~~ 144 (443)
.++.+||+...+........+..|.+|+.|.+.++. +.|.....+++-.+|+.|++++|..++..+..- +.+|..|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 466666666533233344445566666666666665 555555555666666666666665555444333 235666666
Q ss_pred EEcccccCCHHHHHH-hc-CCCCCCEEEecCCC--CChhh-HHhccCCCCccEEEecCC-CCCchhhHhhcCCCCCCEEE
Q 013423 145 LWLSETGLTADGIAL-LS-SLQNLSVLDLGGLP--VTDLV-LRSLQVLTKLEYLDLWGS-QVSNRGAAVLKMFPRLSFLN 218 (443)
Q Consensus 145 L~l~~~~~~~~~~~~-l~-~l~~L~~L~l~~~~--~~~~~-~~~l~~l~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~ 218 (443)
|+++-|......... +. --++|..|+++|+. +...- ..-...+++|.+|++++| .++......|..++.|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 666666544322221 11 12455666665542 11111 111245666666666665 24444444455555566665
Q ss_pred cCCC
Q 013423 219 LAWT 222 (443)
Q Consensus 219 l~~~ 222 (443)
++.|
T Consensus 345 lsRC 348 (419)
T KOG2120|consen 345 LSRC 348 (419)
T ss_pred hhhh
Confidence 5554
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.8e-10 Score=94.87 Aligned_cols=103 Identities=22% Similarity=0.304 Sum_probs=41.6
Q ss_pred CCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhh-hhcCCCCCCCEE
Q 013423 260 LNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL-GSFKPPRSLKLL 338 (443)
Q Consensus 260 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L 338 (443)
+.+|+.|++++|.+.. ...+..++.|++|++++|.|++........+++|++|++++|+|.+... ..+..+++|+.|
T Consensus 41 l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 4567777777777765 2346667777777787777765433222356778888888877765432 445567778888
Q ss_pred eccCCCCCCH-HHHHHHHHhCCCceee
Q 013423 339 DLHGGWLLTE-DAILQFCKMHPRIEVW 364 (443)
Q Consensus 339 ~l~~n~~l~~-~~~~~~~~~~~~l~~~ 364 (443)
++.+|+.... ..-..+...+|+++..
T Consensus 119 ~L~~NPv~~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 119 SLEGNPVCEKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp E-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred eccCCcccchhhHHHHHHHHcChhhee
Confidence 8888873211 1244455677777766
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=6.1e-10 Score=92.84 Aligned_cols=125 Identities=26% Similarity=0.309 Sum_probs=34.3
Q ss_pred CCCCCcEEEcccccCCHHHHHHhc-CCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCE
Q 013423 138 SISTLEKLWLSETGLTADGIALLS-SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSF 216 (443)
Q Consensus 138 ~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 216 (443)
+..++++|++.+|.++.+ ..++ .+.+|+.|++++|.+... ..+..+++|++|++++|.++.........+++|+.
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 344455556655555542 2333 345566666666665553 34555666666666666665322211124566666
Q ss_pred EEcCCCCCCCC------CCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcC
Q 013423 217 LNLAWTGVTKL------PNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLE 269 (443)
Q Consensus 217 L~l~~~~l~~l------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~ 269 (443)
|++++|.+..+ ..+++|+.|++.+|++.... .+-. ..+..+|+|+.||-.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~-~YR~--~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK-NYRL--FVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST-THHH--HHHHH-TT-SEETTE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh-hHHH--HHHHHcChhheeCCE
Confidence 66666665542 24555555666655554321 1111 334556666666543
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=1.9e-09 Score=104.27 Aligned_cols=194 Identities=29% Similarity=0.373 Sum_probs=120.6
Q ss_pred EEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCC-CCCEEEecCCCCChhhHHhccCCCCccEEEecC
Q 013423 119 ELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQ-NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG 197 (443)
Q Consensus 119 ~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 197 (443)
.++...+..... ...+...+.++.|++.++.++.. +......+ +|+.|++++|.+... +..+..++.|+.|++++
T Consensus 97 ~l~~~~~~~~~~--~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSN--ISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccC--chhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhhh-hhhhhccccccccccCC
Confidence 466666522122 33344556777777777777664 33333443 777777777777664 34566777777777777
Q ss_pred CCCCchhhHhhcCCCCCCEEEcCCCCCCCCCC---C-CCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCC
Q 013423 198 SQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN---I-SSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV 273 (443)
Q Consensus 198 ~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~---~-~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l 273 (443)
|.+. .++...+..++|+.|++++|.+..++. . ..|+.+.+++|.... .+ ..+..+.++..+.+.+|++
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-----~~--~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-----LL--SSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee-----cc--hhhhhcccccccccCCcee
Confidence 7776 444444466777777777777777653 2 337777777764221 22 4455666666666777666
Q ss_pred CchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhh
Q 013423 274 SDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 327 (443)
Q Consensus 274 ~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 327 (443)
.. .+..++.+++++.|++++|.+++... ++...+++.|++++|.++...+.
T Consensus 245 ~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 245 ED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 54 24455666677777777777764432 66667777777777776655443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=2.2e-10 Score=99.92 Aligned_cols=127 Identities=23% Similarity=0.340 Sum_probs=76.8
Q ss_pred CCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCC---CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCC
Q 013423 188 TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK---LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLE 264 (443)
Q Consensus 188 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~---l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~ 264 (443)
+.|+++++++|.++ .+.+++.-.|+++.|++++|.+.. +..+++|+.|++++|.+... . .+-..+-+++
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~-----~--Gwh~KLGNIK 355 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAEC-----V--GWHLKLGNIK 355 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhh-----h--hhHhhhcCEe
Confidence 45666666666655 344555555666666666666554 44556666666666654421 1 2223455677
Q ss_pred EEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChH-HHHHhcCCCCCCEEEecCcccCch
Q 013423 265 RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTNS 324 (443)
Q Consensus 265 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~i~~~ 324 (443)
.|.+++|.+.+ ...+..+-+|..|++++|+|... -...++++|.|+.+.+.+|.+...
T Consensus 356 tL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 356 TLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 77777776553 33355666777777777776532 234567777777777777776654
No 35
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.80 E-value=3.2e-08 Score=85.53 Aligned_cols=251 Identities=17% Similarity=0.143 Sum_probs=143.3
Q ss_pred HHHHhcCCCCCcEEeecCCCCCChHHHHhcc----CCCCCcEEecCCCC--CCCHHH-------HHHhhCCCCCcEEEcc
Q 013423 82 WMAYLGAFRYLRSLNVADCRRVTSSALWALT----GMTCLKELDLSRCV--KVTDAG-------MKHLLSISTLEKLWLS 148 (443)
Q Consensus 82 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~--~l~~~~-------~~~~~~l~~L~~L~l~ 148 (443)
....+..+..+..++|++|. ++......++ +-.+|+..+++.-. ...+.. .+++..||+|+..+++
T Consensus 22 v~eel~~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LS 100 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLS 100 (388)
T ss_pred HHHHHHhhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecc
Confidence 33444556778888888887 6655554443 44667777666521 111222 2234466677777776
Q ss_pred cccCCHHHH----HHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCC
Q 013423 149 ETGLTADGI----ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (443)
Q Consensus 149 ~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 224 (443)
+|.+....| +.++....|.+|.+++|.+.......+++ .|.+| .......+-|.|+.+..+.|++
T Consensus 101 DNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l---------a~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 101 DNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL---------AYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred ccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH---------HHHhhhccCCCceEEEeccchh
Confidence 665543222 24445566666666666544322111110 01000 0011122345666666666666
Q ss_pred CC---------CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhh----cccCCCCCCEEE
Q 013423 225 TK---------LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF----PLSTFKELIHLS 291 (443)
Q Consensus 225 ~~---------l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~L~ 291 (443)
.. +..-.+|+.+.+..|.+...+...+.. ..+..+.+|+.||+.+|.++-.... .++.++.|+.|.
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~-~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAF-LGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHH-HHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 54 223356777777777776554444332 4567888999999999977654433 356778899999
Q ss_pred eeCCCCChHHHHH----hc--CCCCCCEEEecCcccCchhhhh-----cC--CCCCCCEEeccCCCC
Q 013423 292 LRNASLTDVSLHQ----LS--SLSKLTNLSIRDAVLTNSGLGS-----FK--PPRSLKLLDLHGGWL 345 (443)
Q Consensus 292 l~~n~i~~~~~~~----l~--~l~~L~~L~l~~n~i~~~~~~~-----l~--~~~~L~~L~l~~n~~ 345 (443)
+..|-++..+... +. ..++|..|-..+|.+.+..... +. ..|-|..+.+.||+.
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 9999876554333 22 3578888888888755443322 11 346677777878873
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.80 E-value=2.9e-09 Score=110.62 Aligned_cols=253 Identities=22% Similarity=0.176 Sum_probs=114.0
Q ss_pred CccEEEecCCCC-CCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 66 NAEAIELRGENS-VDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 66 ~L~~L~L~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
.+++|-+.++.. .......+|..++.|++|+|++|..+.. .|..++.+-+|++|+++++ .+. ..|..+.++..|.+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t-~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDT-GIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCC-Ccc-ccchHHHHHHhhhe
Confidence 466666666531 1122223355566666666666653333 5555666666666666665 444 23555666666666
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCC--CChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCC----EEE
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLP--VTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS----FLN 218 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~----~L~ 218 (443)
|++..+......+.....+++|++|.+.... .+......+..+.+|+.+.+..... .+...+..+++|. .+.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhh
Confidence 6666654433334444456666666665432 2222333444555555555433222 1111112222222 222
Q ss_pred cCCCCC----CCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeC
Q 013423 219 LAWTGV----TKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 294 (443)
Q Consensus 219 l~~~~l----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 294 (443)
+.++.. ..++.+.+|+.|.+.++..................++++..+...++.... .+.+....++|+.|.+.+
T Consensus 701 ~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r-~l~~~~f~~~L~~l~l~~ 779 (889)
T KOG4658|consen 701 IEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR-DLTWLLFAPHLTSLSLVS 779 (889)
T ss_pred hcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc-ccchhhccCcccEEEEec
Confidence 112221 124566677777777776542110000000000001122222222221111 112223446777777777
Q ss_pred CCCChHHHHHhcCCCCCCEEEecCcccCch
Q 013423 295 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 324 (443)
Q Consensus 295 n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~ 324 (443)
+.....++.....+..+..+.+..+.+.+.
T Consensus 780 ~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 780 CRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred ccccccCCCHHHHhhhcccEEecccccccc
Confidence 764333333333444454444544444443
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.79 E-value=5.7e-09 Score=101.01 Aligned_cols=189 Identities=30% Similarity=0.417 Sum_probs=149.3
Q ss_pred cEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCC-CccEEEecCCCCCchhhHhhcCCCCCCEEEcCC
Q 013423 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLT-KLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221 (443)
Q Consensus 143 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 221 (443)
..+....+.+... ...+...+.++.+++.++.+++. +....... +|+.|++++|.+. .++..+..+++|+.|+++.
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 3677777776332 33444568899999999998886 44455563 8999999999986 5556788999999999999
Q ss_pred CCCCCCC----CCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCC
Q 013423 222 TGVTKLP----NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 297 (443)
Q Consensus 222 ~~l~~l~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i 297 (443)
|.+..++ ..++|+.|++++|.+.. +| ........|+++.+++|.+.. .+..+..+.++..+.+.+|++
T Consensus 173 N~l~~l~~~~~~~~~L~~L~ls~N~i~~-----l~--~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 173 NDLSDLPKLLSNLSNLNNLDLSGNKISD-----LP--PEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred chhhhhhhhhhhhhhhhheeccCCcccc-----Cc--hhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCcee
Confidence 9999855 56789999999998875 44 333455679999999995332 455677888899999999987
Q ss_pred ChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCC
Q 013423 298 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 345 (443)
Q Consensus 298 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~ 345 (443)
... +..+..+++++.|++++|.++.... +....+++.|+++++..
T Consensus 245 ~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 245 EDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSL 289 (394)
T ss_pred eec-cchhccccccceecccccccccccc--ccccCccCEEeccCccc
Confidence 642 5677888999999999999998755 77788999999999874
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.78 E-value=9.3e-09 Score=88.74 Aligned_cols=243 Identities=19% Similarity=0.148 Sum_probs=129.8
Q ss_pred CCccEEEecCCCCCC---HHHHHHhcCCCCCcEEeecCCC--CCChHH-------HHhccCCCCCcEEecCCCCCCCHH-
Q 013423 65 HNAEAIELRGENSVD---AEWMAYLGAFRYLRSLNVADCR--RVTSSA-------LWALTGMTCLKELDLSRCVKVTDA- 131 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~---~~~~~~~~~~~~L~~L~L~~~~--~~~~~~-------~~~l~~~~~L~~L~l~~~~~l~~~- 131 (443)
..++.++||+|.+-+ ..+...+++-.+|++.+++.-. ...+.. ..++.+||.|+..+++.|. +...
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA-fg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA-FGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc-cCccc
Confidence 579999999995332 2233445556788888877642 122322 2345689999999999984 4432
Q ss_pred ---HHHHhhCCCCCcEEEcccccCCHHHHHHh-------------cCCCCCCEEEecCCCCChh----hHHhccCCCCcc
Q 013423 132 ---GMKHLLSISTLEKLWLSETGLTADGIALL-------------SSLQNLSVLDLGGLPVTDL----VLRSLQVLTKLE 191 (443)
Q Consensus 132 ---~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-------------~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~ 191 (443)
....+..-..|.+|.+++|.+....-.-+ +.-|.|+++.+..|++... ....+..-..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 23456678899999999998765422211 1334555555555543321 111122223444
Q ss_pred EEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCC
Q 013423 192 YLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQT 271 (443)
Q Consensus 192 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~ 271 (443)
.+.+..|.+.......+.. .++..+.+|+.|++.+|.++-..+..+. ..+...+.|+.|.+.+|
T Consensus 189 ~vki~qNgIrpegv~~L~~--------------~gl~y~~~LevLDlqDNtft~~gS~~La--~al~~W~~lrEL~lnDC 252 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAF--------------LGLFYSHSLEVLDLQDNTFTLEGSRYLA--DALCEWNLLRELRLNDC 252 (388)
T ss_pred eEEeeecCcCcchhHHHHH--------------HHHHHhCcceeeeccccchhhhhHHHHH--HHhcccchhhhccccch
Confidence 4544444443221111100 0022455556666666555544333333 44445555677777776
Q ss_pred CCCchhhhcc----c--CCCCCCEEEeeCCCCChH------HHHHh-cCCCCCCEEEecCcccCch
Q 013423 272 QVSDATLFPL----S--TFKELIHLSLRNASLTDV------SLHQL-SSLSKLTNLSIRDAVLTNS 324 (443)
Q Consensus 272 ~l~~~~~~~l----~--~~~~L~~L~l~~n~i~~~------~~~~l-~~l~~L~~L~l~~n~i~~~ 324 (443)
.++......+ . ..++|..|...+|...+. .+... ..+|-|..|.+.+|++...
T Consensus 253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 6554433332 1 346666666666643221 11111 2456666777777776644
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=9e-10 Score=96.23 Aligned_cols=226 Identities=19% Similarity=0.246 Sum_probs=147.5
Q ss_pred chhhHhhhCCCccEEEecCCCC-------CCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCC
Q 013423 56 FPSLLEVFKHNAEAIELRGENS-------VDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKV 128 (443)
Q Consensus 56 ~~~~~~~~~~~L~~L~L~~~~~-------~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 128 (443)
+...+. |+.+|..|..++... +...++-.+..+++|..+.+++|. ... .......-|.|+++.+... ..
T Consensus 174 ~~hild-f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~-i~~~~~~kptl~t~~v~~s-~~ 249 (490)
T KOG1259|consen 174 FSHVLD-FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TEN-IVDIELLKPTLQTICVHNT-TI 249 (490)
T ss_pred hHHHHH-hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhh-eeceeecCchhheeeeecc-cc
Confidence 344444 566799999987532 222333344567899999999986 222 2232335678899988764 22
Q ss_pred CHHHHHHhhCCCCCcEEEccccc---CCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhh
Q 013423 129 TDAGMKHLLSISTLEKLWLSETG---LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205 (443)
Q Consensus 129 ~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 205 (443)
.+. ..+ +|.-...|..+.. ..+.....+.....|+++++++|.++.+ ...+.-.|.++.|++++|.+.. .
T Consensus 250 ~~~--~~l--~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~--v 322 (490)
T KOG1259|consen 250 QDV--PSL--LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRT--V 322 (490)
T ss_pred ccc--ccc--cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhh-hhhhhhccceeEEeccccceee--e
Confidence 211 111 1111112222211 1111111222335688889998888775 4566778889999999988853 3
Q ss_pred HhhcCCCCCCEEEcCCCCCCCCC----CCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCch-hhhc
Q 013423 206 AVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA-TLFP 280 (443)
Q Consensus 206 ~~l~~l~~L~~L~l~~~~l~~l~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~-~~~~ 280 (443)
..++.+++|+.|++++|.++.+. .+.+++.|.+++|.+. .++.+..+-+|..||+++|++... ....
T Consensus 323 ~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE--------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~ 394 (490)
T KOG1259|consen 323 QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE--------TLSGLRKLYSLVNLDLSSNQIEELDEVNH 394 (490)
T ss_pred hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh--------hhhhhHhhhhheeccccccchhhHHHhcc
Confidence 44778889999999999888743 5678889999888654 347788888999999999988653 3456
Q ss_pred ccCCCCCCEEEeeCCCCChH
Q 013423 281 LSTFKELIHLSLRNASLTDV 300 (443)
Q Consensus 281 l~~~~~L~~L~l~~n~i~~~ 300 (443)
++++|.|+.+.+.+|.+...
T Consensus 395 IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cccccHHHHHhhcCCCcccc
Confidence 88999999999999987643
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=6.9e-09 Score=71.03 Aligned_cols=60 Identities=28% Similarity=0.385 Sum_probs=41.9
Q ss_pred CCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCC
Q 013423 285 KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 285 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 344 (443)
++|++|++++|+++...+..|..+++|++|++++|.++...+..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456677777777666555666677777777777777777666667777777777777765
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=3.8e-10 Score=106.59 Aligned_cols=165 Identities=21% Similarity=0.214 Sum_probs=78.6
Q ss_pred EcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCC
Q 013423 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT 225 (443)
Q Consensus 146 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 225 (443)
+++.|++... |..++.+..|+.+.+..|.+..+ +..+..+..|++++++.|+++ ..|..++.++ |+.|-+++|+++
T Consensus 81 DlsrNR~~el-p~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~ 156 (722)
T KOG0532|consen 81 DLSRNRFSEL-PEEACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT 156 (722)
T ss_pred hccccccccC-chHHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc
Confidence 4444444332 22333333344444444443332 344445555555555555544 3444444444 555555555555
Q ss_pred CCC----CCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHH
Q 013423 226 KLP----NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS 301 (443)
Q Consensus 226 ~l~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~ 301 (443)
.++ ..+.|..|+.+.|.+.. +| ..+.++.+|+.|.+..|.+.+ .|..++ .-.|..|++++|+++ .+
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~s-----lp--sql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQS-----LP--SQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNKIS-YL 226 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhhh-----ch--HHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCcee-ec
Confidence 422 23444444544444432 33 445555555555555555544 333343 233555566666555 34
Q ss_pred HHHhcCCCCCCEEEecCcccCch
Q 013423 302 LHQLSSLSKLTNLSIRDAVLTNS 324 (443)
Q Consensus 302 ~~~l~~l~~L~~L~l~~n~i~~~ 324 (443)
|..|.+|+.|++|.|.+|.+.+.
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred chhhhhhhhheeeeeccCCCCCC
Confidence 44555555666666665555543
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.67 E-value=4.6e-08 Score=99.42 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=50.9
Q ss_pred CCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCC
Q 013423 233 LECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT 312 (443)
Q Consensus 233 L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 312 (443)
++.|++++|.+.+. +| ..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|++++.+|..++.+++|+
T Consensus 420 v~~L~L~~n~L~g~----ip--~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQGLRGF----IP--NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEECCCCCcccc----CC--HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 34444444444332 33 3444455555555555555544444455555555555555555544555555555555
Q ss_pred EEEecCcccCchhhhhcCC-CCCCCEEeccCCC
Q 013423 313 NLSIRDAVLTNSGLGSFKP-PRSLKLLDLHGGW 344 (443)
Q Consensus 313 ~L~l~~n~i~~~~~~~l~~-~~~L~~L~l~~n~ 344 (443)
.|++++|.+++..|..+.. ..++..+++.+|.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 5555555555444444332 1233444444443
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.66 E-value=6.7e-10 Score=105.00 Aligned_cols=172 Identities=22% Similarity=0.267 Sum_probs=140.0
Q ss_pred CCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCC---CCCCCEEecc
Q 013423 163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN---ISSLECLNLS 239 (443)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~---~~~L~~L~l~ 239 (443)
+..-...+++.|++... |..+..+-.|+.+.+..|.+. .+|..++++..|+.++++.|.+..++. .--|+.|-++
T Consensus 74 ltdt~~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSEL-PEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccC-chHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEe
Confidence 34445667788887765 566666777888888888776 678899999999999999999988662 2358899999
Q ss_pred cccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCc
Q 013423 240 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA 319 (443)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 319 (443)
+|++.. +| ..++....|..|+.+.|.+.. .|..++++.+|+.|.+..|++.+. |+.+..+ .|..||+++|
T Consensus 152 NNkl~~-----lp--~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~l-p~El~~L-pLi~lDfScN 221 (722)
T KOG0532|consen 152 NNKLTS-----LP--EEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLEDL-PEELCSL-PLIRLDFSCN 221 (722)
T ss_pred cCcccc-----CC--cccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhhC-CHHHhCC-ceeeeecccC
Confidence 988774 56 667778899999999999886 677789999999999999998754 4455544 5999999999
Q ss_pred ccCchhhhhcCCCCCCCEEeccCCCCCC
Q 013423 320 VLTNSGLGSFKPPRSLKLLDLHGGWLLT 347 (443)
Q Consensus 320 ~i~~~~~~~l~~~~~L~~L~l~~n~~l~ 347 (443)
+++.+ |..|.++..|++|-|.+|++-+
T Consensus 222 kis~i-Pv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 222 KISYL-PVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred ceeec-chhhhhhhhheeeeeccCCCCC
Confidence 99976 7789999999999999999754
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.63 E-value=1.2e-08 Score=69.81 Aligned_cols=61 Identities=26% Similarity=0.396 Sum_probs=50.0
Q ss_pred CCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCccc
Q 013423 261 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 321 (443)
Q Consensus 261 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i 321 (443)
++|++|++++|+++...+..|..+++|++|++++|.++...+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888876667788888888888888888877777888888888888888864
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.55 E-value=3.7e-08 Score=102.47 Aligned_cols=244 Identities=21% Similarity=0.266 Sum_probs=123.5
Q ss_pred CCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCC-CCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCE
Q 013423 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVK-VTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSV 168 (443)
Q Consensus 90 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 168 (443)
...++..+.++. +.. .. .-..+++|++|-+.+|.. +.......|..++.|+.||+++|.-....|..++.+-+|++
T Consensus 523 ~~~rr~s~~~~~-~~~-~~-~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNK-IEH-IA-GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccc-hhh-cc-CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 445555555554 222 11 112345666666666531 33333344556666666666666554455666666666666
Q ss_pred EEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCC-------CCCCCCCCCEEecccc
Q 013423 169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT-------KLPNISSLECLNLSFI 241 (443)
Q Consensus 169 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~-------~l~~~~~L~~L~l~~~ 241 (443)
|+++++.+... |..+++++.|.+|++..+.-....+.....+++|++|.+...... .+.++.+|+.+.....
T Consensus 600 L~L~~t~I~~L-P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 600 LDLSDTGISHL-PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred ccccCCCcccc-chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 66666666643 666666666666666665432233444445666666666544311 1334455555554332
Q ss_pred cccCCchhhhhhHHHhccCCCC----CEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcC------CCCC
Q 013423 242 QQVGAETDLVLSLTALQNLNHL----ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS------LSKL 311 (443)
Q Consensus 242 ~~~~~~~~~~~~l~~~~~~~~L----~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~------l~~L 311 (443)
... +- ..+.....| +.+.+.++... ..+..+..+.+|+.|.+.++.+.+........ ++++
T Consensus 679 s~~------~~--e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 679 SVL------LL--EDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL 749 (889)
T ss_pred hhH------hH--hhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence 210 00 111111122 12222222222 23445667888889999888876543222111 2233
Q ss_pred CEEEecCcc-cCchhhhhcCCCCCCCEEeccCCCCCCH
Q 013423 312 TNLSIRDAV-LTNSGLGSFKPPRSLKLLDLHGGWLLTE 348 (443)
Q Consensus 312 ~~L~l~~n~-i~~~~~~~l~~~~~L~~L~l~~n~~l~~ 348 (443)
..+.+.++. ..+..+ ..-.++|+.|.+..|+.+.+
T Consensus 750 ~~~~~~~~~~~r~l~~--~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 750 SKVSILNCHMLRDLTW--LLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred HHHHhhccccccccch--hhccCcccEEEEeccccccc
Confidence 333344433 222212 22346899999998886553
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=1.2e-07 Score=96.34 Aligned_cols=104 Identities=23% Similarity=0.256 Sum_probs=82.9
Q ss_pred CCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcC
Q 013423 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220 (443)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 220 (443)
.++.|+++++.+.+..|..++.+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+.+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788888888887777888888889999998888887777788888889999998888888888888888889999998
Q ss_pred CCCCCC-CC----C-CCCCCEEeccccccc
Q 013423 221 WTGVTK-LP----N-ISSLECLNLSFIQQV 244 (443)
Q Consensus 221 ~~~l~~-l~----~-~~~L~~L~l~~~~~~ 244 (443)
+|.+.+ ++ . ..++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 888774 33 1 235567777777543
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.49 E-value=9.8e-09 Score=99.61 Aligned_cols=235 Identities=26% Similarity=0.279 Sum_probs=106.1
Q ss_pred CCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHH-hhCCCCCcEEEcccccCCHHHHHHhcCCCCCC
Q 013423 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKH-LLSISTLEKLWLSETGLTADGIALLSSLQNLS 167 (443)
Q Consensus 89 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 167 (443)
+..++.+.+..+. +.. ....+..+.+|+.|++.+| .+.. ... +..+++|++|++++|.|+.. ..+..++.|+
T Consensus 71 l~~l~~l~l~~n~-i~~-~~~~l~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~ 143 (414)
T KOG0531|consen 71 LTSLKELNLRQNL-IAK-ILNHLSKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLK 143 (414)
T ss_pred hHhHHhhccchhh-hhh-hhcccccccceeeeecccc-chhh--cccchhhhhcchheeccccccccc--cchhhccchh
Confidence 3444444444443 332 2223445555666666555 3433 222 44555666666666655542 2333444566
Q ss_pred EEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhh-HhhcCCCCCCEEEcCCCCCCCCCCC---CCCCEEecccccc
Q 013423 168 VLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA-AVLKMFPRLSFLNLAWTGVTKLPNI---SSLECLNLSFIQQ 243 (443)
Q Consensus 168 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~l~~~---~~L~~L~l~~~~~ 243 (443)
.|++.+|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+..+... ..+..+++..|.+
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccc
Confidence 666666655553 334445556666666655542221 1 34555566666666655543322 2222234444433
Q ss_pred cCCchhhhhhHHHhccCCC--CCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCccc
Q 013423 244 VGAETDLVLSLTALQNLNH--LERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 321 (443)
Q Consensus 244 ~~~~~~~~~~l~~~~~~~~--L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i 321 (443)
... ..+..... |+.++++++.+... +..+..+..+..|++..+++... ..+...+.+..+....+.+
T Consensus 221 ~~~--------~~l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 221 SKL--------EGLNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKL 289 (414)
T ss_pred eec--------cCcccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchh
Confidence 211 11111122 55566666555431 13344455566666666554422 1222333444444444443
Q ss_pred Cchhh---hh-cCCCCCCCEEeccCCC
Q 013423 322 TNSGL---GS-FKPPRSLKLLDLHGGW 344 (443)
Q Consensus 322 ~~~~~---~~-l~~~~~L~~L~l~~n~ 344 (443)
....- .. ....+.+..+.+.+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 290 ALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred cchhhhhccccccccccccccccccCc
Confidence 32110 11 2233455555555554
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.48 E-value=8.9e-09 Score=99.91 Aligned_cols=238 Identities=26% Similarity=0.319 Sum_probs=159.1
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHh-ccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWA-LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
.++.+++..+.. ......+..+.+|+.|++..|. +.. ... +..+++|++|++++| .++. ...+..++.|+.
T Consensus 73 ~l~~l~l~~n~i--~~~~~~l~~~~~l~~l~l~~n~-i~~--i~~~l~~~~~L~~L~ls~N-~I~~--i~~l~~l~~L~~ 144 (414)
T KOG0531|consen 73 SLKELNLRQNLI--AKILNHLSKLKSLEALDLYDNK-IEK--IENLLSSLVNLQVLDLSFN-KITK--LEGLSTLTLLKE 144 (414)
T ss_pred hHHhhccchhhh--hhhhcccccccceeeeeccccc-hhh--cccchhhhhcchheecccc-cccc--ccchhhccchhh
Confidence 466667766632 2233446778889999999987 553 333 667889999999998 6665 445667777999
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhH-HhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCC
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVL-RSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 223 (443)
|++.+|.+... ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+.. ...+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccc
Confidence 99999988773 455568888999999988887643 2 4677888888888887642 2333344455555777887
Q ss_pred CCCCCCCC---C--CCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCC
Q 013423 224 VTKLPNIS---S--LECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 298 (443)
Q Consensus 224 l~~l~~~~---~--L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~ 298 (443)
+..+..+. . |+.++++++.+.. ++ ..+..+..+..+++.++.+.. ...+...+.+..+....+.+.
T Consensus 220 i~~~~~l~~~~~~~L~~l~l~~n~i~~-----~~--~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 220 ISKLEGLNELVMLHLRELYLSGNRISR-----SP--EGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ceeccCcccchhHHHHHHhcccCcccc-----cc--ccccccccccccchhhccccc--cccccccchHHHhccCcchhc
Confidence 77654433 3 7888888887653 21 345567778888888887664 222344566666777776654
Q ss_pred hH---HHHH-hcCCCCCCEEEecCcccCchh
Q 013423 299 DV---SLHQ-LSSLSKLTNLSIRDAVLTNSG 325 (443)
Q Consensus 299 ~~---~~~~-l~~l~~L~~L~l~~n~i~~~~ 325 (443)
.. .... ....+.++.+.+..|.+....
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 291 LSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred chhhhhccccccccccccccccccCcccccc
Confidence 22 1111 445678888888888766543
No 49
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.47 E-value=2.6e-07 Score=91.99 Aligned_cols=256 Identities=29% Similarity=0.323 Sum_probs=142.5
Q ss_pred HHhcCCCCCcEEeecCCCCCChHHHHh-ccCCCCCcEEecCCC-CCCCHHH---HHHhhCCCCCcEEEccccc-CCHHHH
Q 013423 84 AYLGAFRYLRSLNVADCRRVTSSALWA-LTGMTCLKELDLSRC-VKVTDAG---MKHLLSISTLEKLWLSETG-LTADGI 157 (443)
Q Consensus 84 ~~~~~~~~L~~L~L~~~~~~~~~~~~~-l~~~~~L~~L~l~~~-~~l~~~~---~~~~~~l~~L~~L~l~~~~-~~~~~~ 157 (443)
.....+++|+.+.+..+..+++..... ...+++|+.|+++++ ...+... ......+++|+.|+++.+. +++...
T Consensus 182 ~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 182 RLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred HHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 333457888888888886666544333 346788888888762 2222111 1122356788888888876 666666
Q ss_pred HHhc-CCCCCCEEEecCCC-CChhhHHhc-cCCCCccEEEecCCCC-Cch-hhHhhcCCCCCCEEEcCCCCCCCCCCCCC
Q 013423 158 ALLS-SLQNLSVLDLGGLP-VTDLVLRSL-QVLTKLEYLDLWGSQV-SNR-GAAVLKMFPRLSFLNLAWTGVTKLPNISS 232 (443)
Q Consensus 158 ~~l~-~l~~L~~L~l~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~l-~~~-~~~~l~~l~~L~~L~l~~~~l~~l~~~~~ 232 (443)
..++ .+++|+.|.+.+|. +++.....+ ..+++|++|++++|.. ++. ......++++++.+.+.... .++.
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~-----~c~~ 336 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN-----GCPS 336 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-----CCcc
Confidence 5555 37788888877666 555544443 4577788888887743 222 22223356666665433221 1445
Q ss_pred CCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchh-hhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCC
Q 013423 233 LECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 311 (443)
Q Consensus 233 L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L 311 (443)
++.+.+.++..... ..+. ......++.++.+.+..+...+.. ...+.+++.| +...........++
T Consensus 337 l~~~~l~~~~~~~~--d~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l----------~~~l~~~~~~~~~l 403 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTS--DDLA-ELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL----------TESLELRLCRSDSL 403 (482)
T ss_pred HHHHHHHHhhccCc--hhHh-HHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc----------chHHHHHhccCCcc
Confidence 55555544332210 0011 144567777777777776544322 1223344433 11111112222337
Q ss_pred CEEEecCcc-cCchhhhhcCC-CCCCCEEeccCCCCCCHHHHHHHHHh
Q 013423 312 TNLSIRDAV-LTNSGLGSFKP-PRSLKLLDLHGGWLLTEDAILQFCKM 357 (443)
Q Consensus 312 ~~L~l~~n~-i~~~~~~~l~~-~~~L~~L~l~~n~~l~~~~~~~~~~~ 357 (443)
+.|+++.+. .+......... +..++.+++.+++.++......+...
T Consensus 404 ~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 404 RVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred ceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhhcc
Confidence 888888876 55444444433 66788888888887776666554443
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.44 E-value=4.1e-07 Score=92.40 Aligned_cols=137 Identities=20% Similarity=0.301 Sum_probs=65.8
Q ss_pred CccEEEecCCCCCCHHHHHHhcC-CCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 66 NAEAIELRGENSVDAEWMAYLGA-FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
+|+.|++++.......++..++. +|+|+.|.+.+-....+.......++|+|..||++++ .++. ...++.+++|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~n--l~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISN--LSGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccC--cHHHhccccHHH
Confidence 45666666655455555555543 5666666665544223322222335666666666664 4443 234455556665
Q ss_pred EEcccccCCH-HHHHHhcCCCCCCEEEecCCCCChhh---HH---hccCCCCccEEEecCCCCCchhh
Q 013423 145 LWLSETGLTA-DGIALLSSLQNLSVLDLGGLPVTDLV---LR---SLQVLTKLEYLDLWGSQVSNRGA 205 (443)
Q Consensus 145 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~---~~---~l~~l~~L~~L~l~~~~l~~~~~ 205 (443)
|.+.+-.+.. .....+.++++|+.||++........ .. --..+|.|+.||.+++.+.....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 5555544443 11223345566666666554322210 00 11235555555555555444333
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=2.1e-07 Score=81.62 Aligned_cols=84 Identities=33% Similarity=0.371 Sum_probs=36.4
Q ss_pred CCCCCcEEecCCCCCCCH-HHHHH-hhCCCCCcEEEcccccCCHHHHHHh-cCCCCCCEEEecCCCCChhh-HHhccCCC
Q 013423 113 GMTCLKELDLSRCVKVTD-AGMKH-LLSISTLEKLWLSETGLTADGIALL-SSLQNLSVLDLGGLPVTDLV-LRSLQVLT 188 (443)
Q Consensus 113 ~~~~L~~L~l~~~~~l~~-~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~-~~~l~~l~ 188 (443)
.+..++++|+.+| .+.+ ....+ +.++|.|+.|+++.|.+... ...+ ....+|+.|.+.+..+.-.. ...+..+|
T Consensus 69 ~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred Hhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 3455555555555 3332 11111 12455555555555554432 1122 23445555555555443221 12233445
Q ss_pred CccEEEecCC
Q 013423 189 KLEYLDLWGS 198 (443)
Q Consensus 189 ~L~~L~l~~~ 198 (443)
.++.|.++.|
T Consensus 147 ~vtelHmS~N 156 (418)
T KOG2982|consen 147 KVTELHMSDN 156 (418)
T ss_pred hhhhhhhccc
Confidence 5555555444
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1e-06 Score=77.33 Aligned_cols=198 Identities=19% Similarity=0.219 Sum_probs=99.1
Q ss_pred CCCCCcEEeecCCCCCChH--HHHhccCCCCCcEEecCCCCCCCHHHHHHh-hCCCCCcEEEcccccCCHHHHH-HhcCC
Q 013423 88 AFRYLRSLNVADCRRVTSS--ALWALTGMTCLKELDLSRCVKVTDAGMKHL-LSISTLEKLWLSETGLTADGIA-LLSSL 163 (443)
Q Consensus 88 ~~~~L~~L~L~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~-~l~~l 163 (443)
.+.++++++|..|. +++- ....+.++|.|++|++++| .+... .... ....+|+.|-+.+..+...... .+..+
T Consensus 69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N-~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCN-SLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCC-cCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 35566666666665 4431 1112335666666666665 33221 1222 1334566666666555433222 33355
Q ss_pred CCCCEEEecCCCCChhhHH--hc-cCCCCccEEEecCCCCCc--hhhHhhcCCCCCCEEEcCCCCCCC------CCCCCC
Q 013423 164 QNLSVLDLGGLPVTDLVLR--SL-QVLTKLEYLDLWGSQVSN--RGAAVLKMFPRLSFLNLAWTGVTK------LPNISS 232 (443)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~--~l-~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~~~l~~------l~~~~~ 232 (443)
|.++.|+++.|.+.....+ .. ...+.+.++.+..|...- .....-.-++++..+.+..|.+++ ....+.
T Consensus 146 P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~ 225 (418)
T KOG2982|consen 146 PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPS 225 (418)
T ss_pred hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCc
Confidence 6666666655532211000 00 112234445554443210 111111235667777777776665 234455
Q ss_pred CCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhh------cccCCCCCCEEEee
Q 013423 233 LECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF------PLSTFKELIHLSLR 293 (443)
Q Consensus 233 L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~------~l~~~~~L~~L~l~ 293 (443)
+..|.++.+++-. ...+..+.+++.|+.|.++++.+.+..-. -++.+++++.|+=+
T Consensus 226 ~~~LnL~~~~ids-----wasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 226 LSCLNLGANNIDS-----WASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred chhhhhccccccc-----HHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 6666666665532 22346778888888888888877653221 14566777776644
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=3.4e-08 Score=96.30 Aligned_cols=124 Identities=27% Similarity=0.247 Sum_probs=65.1
Q ss_pred CCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHh-hcCCCCCCEEEc
Q 013423 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAV-LKMFPRLSFLNL 219 (443)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~-l~~l~~L~~L~l 219 (443)
.|...++++|.+... ..++.-++.++.|+++.|++++. +.+..++.|++|++++|.+. .+|.. ...+ +|..|.+
T Consensus 165 ~L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeee
Confidence 344555555554432 33444556666666666666654 25566666666666666554 22211 1122 2666666
Q ss_pred CCCCCCC---CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCC
Q 013423 220 AWTGVTK---LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 274 (443)
Q Consensus 220 ~~~~l~~---l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~ 274 (443)
++|.++. +.++++|..|++++|-+.+.. .+..+..+..|+.|.|.+|.+.
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hs-----eL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHS-----ELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcch-----hhhHHHHHHHHHHHhhcCCccc
Confidence 6665544 445666666666666554421 1122333445566666666543
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.16 E-value=4e-06 Score=85.37 Aligned_cols=186 Identities=20% Similarity=0.316 Sum_probs=117.0
Q ss_pred ccchHHHHHHHHHHHhcccc-chhhHhhh--CCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHH-----
Q 013423 36 RLPAHLADSLLRHLIRRRLI-FPSLLEVF--KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSA----- 107 (443)
Q Consensus 36 ~lp~~l~~~~l~~L~~~~~~-~~~~~~~~--~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~----- 107 (443)
.+++..+.++...+-.+... .+...... .-+++..++.+.. ........+.. ..|++|.+.+...+....
T Consensus 28 ~ld~~sSn~i~~~ll~~~~~~~~~~~~~~~~~f~ltki~l~~~~-~~~~~~~~l~~-~~L~sl~LGnl~~~k~~~~~~~~ 105 (699)
T KOG3665|consen 28 ELDPKSSNKIYSELLLKKFELTPEFLERIIRKFNLTKIDLKNVT-LQHQTLEMLRK-QDLESLKLGNLDKIKQDYLDDAT 105 (699)
T ss_pred ecChhhhHHHHHHHHhccCCCchhHHHhhhhhheeEEeecccee-cchhHHHHHhh-ccccccCCcchHhhhhhhhhhhh
Confidence 35555555555555543221 11111111 1258888888764 33333344444 338888887764222111
Q ss_pred ------HHhcc---CCCCCcEEecCCCCCCCHHHHHHhh-CCCCCcEEEcccccCCHHHHH-HhcCCCCCCEEEecCCCC
Q 013423 108 ------LWALT---GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTADGIA-LLSSLQNLSVLDLGGLPV 176 (443)
Q Consensus 108 ------~~~l~---~~~~L~~L~l~~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 176 (443)
...+. .-.+|++|+++|...+....+..++ .+|+|+.|.+.+-.+...... ...+.|+|..||++++++
T Consensus 106 idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI 185 (699)
T KOG3665|consen 106 IDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI 185 (699)
T ss_pred ccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc
Confidence 11111 2368999999997666665566676 689999999988777554333 334789999999999988
Q ss_pred ChhhHHhccCCCCccEEEecCCCCCc-hhhHhhcCCCCCCEEEcCCCCCC
Q 013423 177 TDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVT 225 (443)
Q Consensus 177 ~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~ 225 (443)
+.. ..++.+++|+.|.+.+-.+.. .....+.++++|+.||++.....
T Consensus 186 ~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 186 SNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred cCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 875 567889999999887766543 33455677888888888876543
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=1.5e-07 Score=91.82 Aligned_cols=196 Identities=24% Similarity=0.339 Sum_probs=120.3
Q ss_pred CCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCH-HHHHHhhCCCCCcEEEcccccCC---HHHHH---Hh
Q 013423 88 AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTD-AGMKHLLSISTLEKLWLSETGLT---ADGIA---LL 160 (443)
Q Consensus 88 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~---~~~~~---~l 160 (443)
-+++++.|.+-....-....+-.+..+..|++|.+.+| .+.. .+...+. ..|+.|... +... +.... .+
T Consensus 82 ~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~-~L~~~~GL~~lr--~qLe~LIC~-~Sl~Al~~v~ascggd~ 157 (1096)
T KOG1859|consen 82 FLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGC-DLSTAKGLQELR--HQLEKLICH-NSLDALRHVFASCGGDI 157 (1096)
T ss_pred HHhhheeeeecccCCCCCCCCceeccccceeeEEecCc-chhhhhhhHHHH--Hhhhhhhhh-ccHHHHHHHHHHhcccc
Confidence 35666666665543111111334557788888888887 4432 1111111 133333322 1111 11111 11
Q ss_pred cC---CCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCC----CC
Q 013423 161 SS---LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS----SL 233 (443)
Q Consensus 161 ~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~----~L 233 (443)
++ .-.|.+.+.++|.+... ..++.-++.++.|++++|.++. ...+..+++|++||+++|.++.++.+. .|
T Consensus 158 ~ns~~Wn~L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L 234 (1096)
T KOG1859|consen 158 SNSPVWNKLATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKL 234 (1096)
T ss_pred ccchhhhhHhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhccccccchhhhhh
Confidence 11 12466667777776654 5567788899999999999864 347888999999999999988876432 48
Q ss_pred CEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchh-hhcccCCCCCCEEEeeCCCCC
Q 013423 234 ECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNASLT 298 (443)
Q Consensus 234 ~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~n~i~ 298 (443)
..|.+.+|.+. .+..+.++.+|+.||+++|-+.+-. ...+..+..|+.|.|.||.+-
T Consensus 235 ~~L~lrnN~l~--------tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALT--------TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHH--------hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88888887654 3466778888888999888665421 122345677888888888764
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.98 E-value=6.4e-06 Score=81.98 Aligned_cols=219 Identities=29% Similarity=0.329 Sum_probs=117.8
Q ss_pred CCCCCcEEecCCCCCCCHHHH-HHhhCCCCCcEEEcccc-c-CCHH---HHHHhcCCCCCCEEEecCCC-CChhhHHhcc
Q 013423 113 GMTCLKELDLSRCVKVTDAGM-KHLLSISTLEKLWLSET-G-LTAD---GIALLSSLQNLSVLDLGGLP-VTDLVLRSLQ 185 (443)
Q Consensus 113 ~~~~L~~L~l~~~~~l~~~~~-~~~~~l~~L~~L~l~~~-~-~~~~---~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~ 185 (443)
.++.|+.|.+.++..+++... .....++.|+.|+++++ . +... .......+++|+.++++++. +++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 578888888888776765433 33447888888888762 1 1111 11223356777788887776 6666555554
Q ss_pred C-CCCccEEEecCCC-CCchhhHhhc-CCCCCCEEEcCCCCCCC-------CCCCCCCCEEecccccccCCchhhhhhHH
Q 013423 186 V-LTKLEYLDLWGSQ-VSNRGAAVLK-MFPRLSFLNLAWTGVTK-------LPNISSLECLNLSFIQQVGAETDLVLSLT 255 (443)
Q Consensus 186 ~-l~~L~~L~l~~~~-l~~~~~~~l~-~l~~L~~L~l~~~~l~~-------l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 255 (443)
. +++|++|.+..|. +++.....+. .++.|++|+++++.... ..++++++.+.+...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~-------------- 331 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL-------------- 331 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc--------------
Confidence 3 6777777766665 5544433333 56667777777554321 112333333322211
Q ss_pred HhccCCCCCEEEcCCCCC-C--chhhhcccCCCCCCEEEeeCCCCChHH-HHHhcCCCCCCEEEecCcccCchhhhhcCC
Q 013423 256 ALQNLNHLERLNLEQTQV-S--DATLFPLSTFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNSGLGSFKP 331 (443)
Q Consensus 256 ~~~~~~~L~~L~l~~~~l-~--~~~~~~l~~~~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~ 331 (443)
..+..++.+.+.++.. . .........+++++.+.+..+..++.. ...+.+++.|+ ..+.. ....
T Consensus 332 --~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~~~ 399 (482)
T KOG1947|consen 332 --NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RLCR 399 (482)
T ss_pred --CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------Hhcc
Confidence 1122333333333211 1 111222446677777777776644333 23444455441 11111 1112
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHHh
Q 013423 332 PRSLKLLDLHGGWLLTEDAILQFCKM 357 (443)
Q Consensus 332 ~~~L~~L~l~~n~~l~~~~~~~~~~~ 357 (443)
..+++.|+++.|..+++..+......
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~ 425 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADS 425 (482)
T ss_pred CCccceEecccCccccccchHHHhhh
Confidence 22389999999998888887776543
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=4.1e-05 Score=47.91 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=20.0
Q ss_pred CCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCch
Q 013423 286 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 324 (443)
Q Consensus 286 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~ 324 (443)
+|++|++++|+|++. +..++++++|+.|++++|++++.
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCCC
Confidence 455666666666543 22455666666666666665543
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=4.8e-05 Score=47.62 Aligned_cols=38 Identities=32% Similarity=0.419 Sum_probs=21.0
Q ss_pred CccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCC
Q 013423 189 KLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL 227 (443)
Q Consensus 189 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l 227 (443)
+|++|++++|.++ .++..++++++|+.|++++|.++++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 4566666666665 3444466666666666666665543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=0.00024 Score=67.07 Aligned_cols=142 Identities=12% Similarity=0.077 Sum_probs=80.1
Q ss_pred HHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCC-CCCchhhHhhcC
Q 013423 132 GMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS-QVSNRGAAVLKM 210 (443)
Q Consensus 132 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~l~~ 210 (443)
....+..+.+++.|++++|.++.. | .-..+|++|.+++|.-....+..+ .++|++|.+.+| .+. .+|
T Consensus 44 a~~r~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP----- 111 (426)
T PRK15386 44 ITPQIEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP----- 111 (426)
T ss_pred HHHHHHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc-----
Confidence 334455678899999998877664 3 123468888888764333333333 357888888887 443 233
Q ss_pred CCCCCEEEcCCCCCCCCCCC-CCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCE
Q 013423 211 FPRLSFLNLAWTGVTKLPNI-SSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 289 (443)
Q Consensus 211 l~~L~~L~l~~~~l~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 289 (443)
.+|+.|++.++....++.+ ++|+.|.+.++..... ..++ . .-.++|+.|++++|.... .|..+ ..+|+.
T Consensus 112 -~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~--~~lp--~--~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~ 181 (426)
T PRK15386 112 -ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQ--ARID--N--LISPSLKTLSLTGCSNII-LPEKL--PESLQS 181 (426)
T ss_pred -cccceEEeCCCCCcccccCcchHhheeccccccccc--cccc--c--ccCCcccEEEecCCCccc-Ccccc--cccCcE
Confidence 3577777776665555543 3677777654321100 0011 0 011567777777765432 22222 146777
Q ss_pred EEeeCC
Q 013423 290 LSLRNA 295 (443)
Q Consensus 290 L~l~~n 295 (443)
|.++.+
T Consensus 182 L~ls~n 187 (426)
T PRK15386 182 ITLHIE 187 (426)
T ss_pred EEeccc
Confidence 777665
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.57 E-value=0.0001 Score=61.44 Aligned_cols=105 Identities=21% Similarity=0.208 Sum_probs=65.0
Q ss_pred CCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHH-HHHhcCCCC
Q 013423 232 SLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS-LHQLSSLSK 310 (443)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~-~~~l~~l~~ 310 (443)
+...+++++|.+.. +..+..++.|..|.+.+|.++...|.--.-+++|..|.+.+|++.... ..-+..||+
T Consensus 43 ~~d~iDLtdNdl~~--------l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--------LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccceecccccchhh--------cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 44555666555442 134556677777777777777755544445577888888887765331 234566778
Q ss_pred CCEEEecCcccCchhh---hhcCCCCCCCEEeccCCC
Q 013423 311 LTNLSIRDAVLTNSGL---GSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 311 L~~L~l~~n~i~~~~~---~~l~~~~~L~~L~l~~n~ 344 (443)
|++|.+-+|.++...- ..+..+++|+.||..+=.
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 8888888877765422 123356788888876643
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.52 E-value=0.00024 Score=67.01 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=80.6
Q ss_pred hccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCC-CCChhhHHhccCCC
Q 013423 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGL-PVTDLVLRSLQVLT 188 (443)
Q Consensus 110 ~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~l~~l~ 188 (443)
.+..+++++.|++++| .++.. + .-..+|++|.+++|.-....|..+ .++|++|++++| .+.. . ..
T Consensus 47 r~~~~~~l~~L~Is~c-~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-L------P~ 112 (426)
T PRK15386 47 QIEEARASGRLYIKDC-DIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-L------PE 112 (426)
T ss_pred HHHHhcCCCEEEeCCC-CCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-c------cc
Confidence 3456789999999998 66653 2 123469999998865433334433 258899999988 4332 2 24
Q ss_pred CccEEEecCCCCCchhhHhhcCC-CCCCEEEcCCCC-C--CCCC--CCCCCCEEecccccccCCchhhhhhHHHhccCCC
Q 013423 189 KLEYLDLWGSQVSNRGAAVLKMF-PRLSFLNLAWTG-V--TKLP--NISSLECLNLSFIQQVGAETDLVLSLTALQNLNH 262 (443)
Q Consensus 189 ~L~~L~l~~~~l~~~~~~~l~~l-~~L~~L~l~~~~-l--~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~ 262 (443)
+|+.|++..+.... +..+ ++|+.|.+.++. . ..++ -+++|+.|.+++|.... +| ..+ ..+
T Consensus 113 sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-----LP--~~L--P~S 178 (426)
T PRK15386 113 SVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-----LP--EKL--PES 178 (426)
T ss_pred ccceEEeCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-----Cc--ccc--ccc
Confidence 57777776554321 1222 356677664322 1 1122 23689999999887542 22 111 157
Q ss_pred CCEEEcCCC
Q 013423 263 LERLNLEQT 271 (443)
Q Consensus 263 L~~L~l~~~ 271 (443)
|+.|.++.+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 899998775
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=2.8e-05 Score=60.63 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=49.9
Q ss_pred hhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCC
Q 013423 136 LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS 215 (443)
Q Consensus 136 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 215 (443)
+.....|+..++++|.+....+..-...+.++.+++.+|.+++. |..+..++.|+.++++.|.+. ..|+.+..+.++.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 33445555556666665554333333445666666666666554 455666666666666666654 4455555555666
Q ss_pred EEEcCCCCCCC
Q 013423 216 FLNLAWTGVTK 226 (443)
Q Consensus 216 ~L~l~~~~l~~ 226 (443)
.|+..+|....
T Consensus 127 ~Lds~~na~~e 137 (177)
T KOG4579|consen 127 MLDSPENARAE 137 (177)
T ss_pred HhcCCCCcccc
Confidence 66655555443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=2e-05 Score=68.82 Aligned_cols=99 Identities=26% Similarity=0.264 Sum_probs=54.7
Q ss_pred CCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCC------CCCCCCCCEEe
Q 013423 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK------LPNISSLECLN 237 (443)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~------l~~~~~L~~L~ 237 (443)
.+.+.|++.||.++++ ....+|+.|+.|.++-|.++.. ..+..|++|+.|++..|.|.+ +.++|+|+.|+
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3455555555555553 2334566666666666655422 234556666666666666555 44667777777
Q ss_pred cccccccCCchhhhhhHHHhccCCCCCEEE
Q 013423 238 LSFIQQVGAETDLVLSLTALQNLNHLERLN 267 (443)
Q Consensus 238 l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~ 267 (443)
|..|+..+........ ..+..+++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~-~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRR-KVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHH-HHHHHcccchhcc
Confidence 7777665542221111 3456667777764
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.00027 Score=59.08 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=14.6
Q ss_pred CCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCC
Q 013423 138 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLP 175 (443)
Q Consensus 138 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 175 (443)
.++.|..|.+.+|+|+.+.|..-..+++|..|.+.+|+
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 33444444444444443333222233334444444333
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.19 E-value=6.3e-05 Score=58.73 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=55.8
Q ss_pred CCCCEEEcCCCCCCc--hhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEE
Q 013423 261 NHLERLNLEQTQVSD--ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLL 338 (443)
Q Consensus 261 ~~L~~L~l~~~~l~~--~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 338 (443)
..+..++++.|.+.. ..+..+.....|+..++++|.+.+..+......+.++.|++.+|.+++. |..+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhc
Confidence 345667777776543 1222344556677778888877765555555666778888888888876 4447777788888
Q ss_pred eccCCCC
Q 013423 339 DLHGGWL 345 (443)
Q Consensus 339 ~l~~n~~ 345 (443)
+++.|+.
T Consensus 106 Nl~~N~l 112 (177)
T KOG4579|consen 106 NLRFNPL 112 (177)
T ss_pred ccccCcc
Confidence 8888874
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.0003 Score=58.76 Aligned_cols=82 Identities=32% Similarity=0.543 Sum_probs=55.7
Q ss_pred ccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccC-CCCCcEEecCCCCCCCHHHHHHhhCCCCCcEE
Q 013423 67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (443)
Q Consensus 67 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 145 (443)
++.+|=+++. +...-...+.+++.++.|.+.+|..+.+.....+++ .++|+.|++++|..+|+.+...+..+++|+.|
T Consensus 103 IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 6666666653 445555666777777777777777677666666663 56777777777777777767667677777776
Q ss_pred Eccc
Q 013423 146 WLSE 149 (443)
Q Consensus 146 ~l~~ 149 (443)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.00031 Score=58.73 Aligned_cols=103 Identities=20% Similarity=0.293 Sum_probs=73.1
Q ss_pred CCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCC-CChHHHHHhcC-CCCCCEEEecCcc-cCchhhhhcCCCCCCCEE
Q 013423 262 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSS-LSKLTNLSIRDAV-LTNSGLGSFKPPRSLKLL 338 (443)
Q Consensus 262 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~-l~~L~~L~l~~n~-i~~~~~~~l~~~~~L~~L 338 (443)
.++.++-+++.+..+....+..+++++.|.+.+|. +.+...+.+++ .++|+.|+++.|. ||+.+...+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46777777777777777777888888888888876 66666666654 3688888888774 888888888888888888
Q ss_pred eccCCCCCC--HHHHHHHHHhCCCceee
Q 013423 339 DLHGGWLLT--EDAILQFCKMHPRIEVW 364 (443)
Q Consensus 339 ~l~~n~~l~--~~~~~~~~~~~~~l~~~ 364 (443)
.+.+=+.+. +.....+...+|..++.
T Consensus 182 ~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 182 HLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred HhcCchhhhchHHHHHHHHHhCccccee
Confidence 887654332 22344555666766654
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.10 E-value=0.0003 Score=56.14 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=44.8
Q ss_pred hcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCC
Q 013423 86 LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQN 165 (443)
Q Consensus 86 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 165 (443)
|..+.+|+.+.+... +.......|.++++|+.+.+.++ +.......|..+++++.+.+.. .+.......+..+++
T Consensus 8 F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECCC--eeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 444556666665532 34444445555656666666543 3333334455555566666643 333333334455566
Q ss_pred CCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCC
Q 013423 166 LSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL 214 (443)
Q Consensus 166 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L 214 (443)
|+.+.+..+ +.......+..+ +|+.+.+.. .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666666443 333333444554 566665544 2222233444444444
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.07 E-value=4.9e-05 Score=74.17 Aligned_cols=210 Identities=27% Similarity=0.274 Sum_probs=104.4
Q ss_pred CcEEecCCCCCCCHHHHHH----hhCCCCCcEEEcccccCCHHHHHHhc----CC-CCCCEEEecCCCCChh----hHHh
Q 013423 117 LKELDLSRCVKVTDAGMKH----LLSISTLEKLWLSETGLTADGIALLS----SL-QNLSVLDLGGLPVTDL----VLRS 183 (443)
Q Consensus 117 L~~L~l~~~~~l~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~l~----~l-~~L~~L~l~~~~~~~~----~~~~ 183 (443)
+..|.+.+| .+.+..... +...++|+.|++++|.+.+.....+. .. +.+++|.+..|.++.. ....
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 666777776 454433333 33566777777777777655444333 11 3455555555554433 2233
Q ss_pred ccCCCCccEEEecCCCCCch----hhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhcc
Q 013423 184 LQVLTKLEYLDLWGSQVSNR----GAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQN 259 (443)
Q Consensus 184 l~~l~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 259 (443)
+.....++.++++.|.+... .+..+.. .+....++++|.+.+|.........+- ..+..
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~---------------~~~~~~~le~L~L~~~~~t~~~c~~l~--~~l~~ 230 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALES---------------AASPLSSLETLKLSRCGVTSSSCALLD--EVLAS 230 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhh---------------hhcccccHHHHhhhhcCcChHHHHHHH--HHHhc
Confidence 33455555566555544211 1111111 112234555566665555433222222 33444
Q ss_pred CCC-CCEEEcCCCCCCchhhhc----ccCC-CCCCEEEeeCCCCChH----HHHHhcCCCCCCEEEecCcccCchhhhhc
Q 013423 260 LNH-LERLNLEQTQVSDATLFP----LSTF-KELIHLSLRNASLTDV----SLHQLSSLSKLTNLSIRDAVLTNSGLGSF 329 (443)
Q Consensus 260 ~~~-L~~L~l~~~~l~~~~~~~----l~~~-~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~i~~~~~~~l 329 (443)
.+. +..+++..|.+.+..... +..+ ..++.++++.|++++. ..+.+..++.++.+.+++|.+++......
T Consensus 231 ~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~ 310 (478)
T KOG4308|consen 231 GESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELL 310 (478)
T ss_pred cchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHH
Confidence 444 555666666666543332 2233 4556677777666543 33344455667777777776666544322
Q ss_pred ----CCCCCCCEEeccCCC
Q 013423 330 ----KPPRSLKLLDLHGGW 344 (443)
Q Consensus 330 ----~~~~~L~~L~l~~n~ 344 (443)
.....+..+.+.++.
T Consensus 311 ~~~l~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 311 LEALERKTPLLHLVLGGTG 329 (478)
T ss_pred HHHhhhcccchhhhccccC
Confidence 223344455555443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.00023 Score=62.35 Aligned_cols=79 Identities=25% Similarity=0.346 Sum_probs=37.4
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCH-HHHHHhhCCCCCcE
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTD-AGMKHLLSISTLEK 144 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~-~~~~~~~~l~~L~~ 144 (443)
+++.|+..+|.. ++. .....++.|++|.|+-|+ |+. ...+..|++|++|+|..| .+.+ ....++.++++|+.
T Consensus 20 ~vkKLNcwg~~L-~DI--sic~kMp~lEVLsLSvNk-Iss--L~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 20 NVKKLNCWGCGL-DDI--SICEKMPLLEVLSLSVNK-ISS--LAPLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HhhhhcccCCCc-cHH--HHHHhcccceeEEeeccc-ccc--chhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 345555555532 211 223345555555555554 332 333445555555555555 3332 12334445555555
Q ss_pred EEccccc
Q 013423 145 LWLSETG 151 (443)
Q Consensus 145 L~l~~~~ 151 (443)
|.|..|.
T Consensus 93 LWL~ENP 99 (388)
T KOG2123|consen 93 LWLDENP 99 (388)
T ss_pred HhhccCC
Confidence 5555543
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.00037 Score=60.66 Aligned_cols=102 Identities=29% Similarity=0.383 Sum_probs=58.6
Q ss_pred CCCCCEEEcCCCCCC---CCCCCCCCCEEecccc--cccCCchhhhhhHHHhccCCCCCEEEcCCCCCCc-hhhhcccCC
Q 013423 211 FPRLSFLNLAWTGVT---KLPNISSLECLNLSFI--QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-ATLFPLSTF 284 (443)
Q Consensus 211 l~~L~~L~l~~~~l~---~l~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~ 284 (443)
+..|+.+.+.+..++ .+|.+++|+.|.++.| ...+. ++ .....+++|+++++++|++.. .....+..+
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~----l~--vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGG----LE--VLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCccccccc----ce--ehhhhCCceeEEeecCCccccccccchhhhh
Confidence 344555555555444 4677778888888887 33321 22 223445788888888887764 112224456
Q ss_pred CCCCEEEeeCCCCCh---HHHHHhcCCCCCCEEEecC
Q 013423 285 KELIHLSLRNASLTD---VSLHQLSSLSKLTNLSIRD 318 (443)
Q Consensus 285 ~~L~~L~l~~n~i~~---~~~~~l~~l~~L~~L~l~~ 318 (443)
.+|..|++..|..+. .--..+.-+++|++|+-..
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 677777777776442 2223344556666666544
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.80 E-value=9.4e-05 Score=72.23 Aligned_cols=194 Identities=27% Similarity=0.304 Sum_probs=120.1
Q ss_pred CcEEEcccccCCHHHHH----HhcCCCCCCEEEecCCCCChhhHHhc----cCC-CCccEEEecCCCCCch----hhHhh
Q 013423 142 LEKLWLSETGLTADGIA----LLSSLQNLSVLDLGGLPVTDLVLRSL----QVL-TKLEYLDLWGSQVSNR----GAAVL 208 (443)
Q Consensus 142 L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l-~~L~~L~l~~~~l~~~----~~~~l 208 (443)
+..+.+.+|.+...... .+...++|..|++++|.+.+.....+ ... +.+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66777777776654333 34456777777777777765543333 222 4455566666555432 22333
Q ss_pred cCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhc----cCCCCCEEEcCCCCCCchhhhc----
Q 013423 209 KMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQ----NLNHLERLNLEQTQVSDATLFP---- 280 (443)
Q Consensus 209 ~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~----~~~~L~~L~l~~~~l~~~~~~~---- 280 (443)
.....++.++++.| .+.......++ ..+. ...+++.|++.+|.++......
T Consensus 169 ~~~~~l~~l~l~~n-------------------~l~~~g~~~l~--~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~ 227 (478)
T KOG4308|consen 169 EKNEHLTELDLSLN-------------------GLIELGLLVLS--QALESAASPLSSLETLKLSRCGVTSSSCALLDEV 227 (478)
T ss_pred hcccchhHHHHHhc-------------------ccchhhhHHHh--hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH
Confidence 33444444444444 43322112222 3333 4678999999999887643332
Q ss_pred ccCCCC-CCEEEeeCCCCChHHHH----HhcCC-CCCCEEEecCcccCchhhhhc----CCCCCCCEEeccCCCCCCHHH
Q 013423 281 LSTFKE-LIHLSLRNASLTDVSLH----QLSSL-SKLTNLSIRDAVLTNSGLGSF----KPPRSLKLLDLHGGWLLTEDA 350 (443)
Q Consensus 281 l~~~~~-L~~L~l~~n~i~~~~~~----~l~~l-~~L~~L~l~~n~i~~~~~~~l----~~~~~L~~L~l~~n~~l~~~~ 350 (443)
+...+. +..|++..|++.+.+.. .+..+ ..+++++++.|.|++.+...+ ..++.++++.++.|+ +++..
T Consensus 228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~-l~~~~ 306 (478)
T KOG4308|consen 228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP-LTDYG 306 (478)
T ss_pred HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc-cccHH
Confidence 344555 77899999998876433 34445 678999999999998877544 356899999999999 66666
Q ss_pred HHHHHHh
Q 013423 351 ILQFCKM 357 (443)
Q Consensus 351 ~~~~~~~ 357 (443)
.....+.
T Consensus 307 ~~~~~~~ 313 (478)
T KOG4308|consen 307 VELLLEA 313 (478)
T ss_pred HHHHHHH
Confidence 6555444
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.78 E-value=0.0022 Score=51.02 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=12.4
Q ss_pred ccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCC
Q 013423 184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221 (443)
Q Consensus 184 l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 221 (443)
|..+++|+.+.+.. .+.......|.++++|+.+.+..
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 34444555555442 22223333344444455444443
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.43 E-value=0.0011 Score=57.76 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=28.6
Q ss_pred cCCCCCCEEEeeCC--CCChHHHHHhcCCCCCCEEEecCcccCch-hhhhcCCCCCCCEEeccCCC
Q 013423 282 STFKELIHLSLRNA--SLTDVSLHQLSSLSKLTNLSIRDAVLTNS-GLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 282 ~~~~~L~~L~l~~n--~i~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~l~~~~~L~~L~l~~n~ 344 (443)
..+++|+.|.++.| ++....+.....+++|++++++.|+|... ....+..+.+|..|++.+|.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 34455555555555 33333222333345555555555555431 01112233455555555554
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.25 E-value=0.026 Score=30.61 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=20.9
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHH
Q 013423 332 PRSLKLLDLHGGWLLTEDAILQFCK 356 (443)
Q Consensus 332 ~~~L~~L~l~~n~~l~~~~~~~~~~ 356 (443)
+++|++|++++|+.++|..+..+++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 4689999999999999998887653
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.08 E-value=0.083 Score=27.88 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=10.5
Q ss_pred CCCCEEeccCCCCCCHHHHHHH
Q 013423 333 RSLKLLDLHGGWLLTEDAILQF 354 (443)
Q Consensus 333 ~~L~~L~l~~n~~l~~~~~~~~ 354 (443)
++|++|+|++|+ ++++.+..+
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHHh
Confidence 455666666665 555555544
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.89 E-value=0.16 Score=27.39 Aligned_cols=22 Identities=50% Similarity=0.896 Sum_probs=11.3
Q ss_pred CCCcEEecCCCCCCCHHHHHHh
Q 013423 115 TCLKELDLSRCVKVTDAGMKHL 136 (443)
Q Consensus 115 ~~L~~L~l~~~~~l~~~~~~~~ 136 (443)
++|++|++++|..+++.+...+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4555555555555555444443
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.82 E-value=0.1 Score=27.53 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=5.2
Q ss_pred CCCEEEeeCCCCChH
Q 013423 286 ELIHLSLRNASLTDV 300 (443)
Q Consensus 286 ~L~~L~l~~n~i~~~ 300 (443)
+|++|++++|+|++.
T Consensus 3 ~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 3 NLETLDLSNNQITDE 17 (24)
T ss_dssp T-SEEE-TSSBEHHH
T ss_pred CCCEEEccCCcCCHH
Confidence 334444444444333
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.69 E-value=0.12 Score=26.59 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=9.7
Q ss_pred CCCEEEecCcccCch
Q 013423 310 KLTNLSIRDAVLTNS 324 (443)
Q Consensus 310 ~L~~L~l~~n~i~~~ 324 (443)
+|++|++++|+++..
T Consensus 1 ~L~~Ldls~n~l~~i 15 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSI 15 (22)
T ss_dssp TESEEEETSSEESEE
T ss_pred CccEEECCCCcCEeC
Confidence 366777777777643
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.38 E-value=0.21 Score=23.87 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=3.9
Q ss_pred CCEEEecCcccC
Q 013423 311 LTNLSIRDAVLT 322 (443)
Q Consensus 311 L~~L~l~~n~i~ 322 (443)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444433
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.99 E-value=0.63 Score=25.62 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=16.5
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHHh
Q 013423 333 RSLKLLDLHGGWLLTEDAILQFCKM 357 (443)
Q Consensus 333 ~~L~~L~l~~n~~l~~~~~~~~~~~ 357 (443)
++|++|+|++|. ++++....+++.
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHHH
Confidence 467777777777 677776666554
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.09 E-value=0.68 Score=24.81 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=10.9
Q ss_pred CCCCEEEecCcccCchhhh
Q 013423 309 SKLTNLSIRDAVLTNSGLG 327 (443)
Q Consensus 309 ~~L~~L~l~~n~i~~~~~~ 327 (443)
++|+.|++++|+++...+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666655443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.09 E-value=0.68 Score=24.81 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=10.9
Q ss_pred CCCCEEEecCcccCchhhh
Q 013423 309 SKLTNLSIRDAVLTNSGLG 327 (443)
Q Consensus 309 ~~L~~L~l~~n~i~~~~~~ 327 (443)
++|+.|++++|+++...+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666655443
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.43 E-value=4.1 Score=21.97 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=9.7
Q ss_pred CCCCEEEcCCCCCCCCC
Q 013423 212 PRLSFLNLAWTGVTKLP 228 (443)
Q Consensus 212 ~~L~~L~l~~~~l~~l~ 228 (443)
++|+.|+++.|.++.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 45666666666655444
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.88 E-value=7.3 Score=38.45 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=48.1
Q ss_pred CCCCCCEEEeeCCCCChH--HHHHhcCCCCCCEEEecCc--ccCchhhhhcC--CCCCCCEEeccCCCCCCH-----HHH
Q 013423 283 TFKELIHLSLRNASLTDV--SLHQLSSLSKLTNLSIRDA--VLTNSGLGSFK--PPRSLKLLDLHGGWLLTE-----DAI 351 (443)
Q Consensus 283 ~~~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~l~~n--~i~~~~~~~l~--~~~~L~~L~l~~n~~l~~-----~~~ 351 (443)
+.+.+..+++++|++... .-..-...|+|+.|+|++| .+... .++. +...|++|.+.||+..+. +.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 345666666777764322 1111224578888888887 34332 1222 234688899999985432 335
Q ss_pred HHHHHhCCCceeee
Q 013423 352 LQFCKMHPRIEVWH 365 (443)
Q Consensus 352 ~~~~~~~~~l~~~~ 365 (443)
..+.+.+|.+..++
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 56777888887763
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=63.70 E-value=0.24 Score=42.84 Aligned_cols=91 Identities=11% Similarity=0.080 Sum_probs=59.2
Q ss_pred HhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCC
Q 013423 256 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 335 (443)
Q Consensus 256 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L 335 (443)
.+......+.||++.|.+.. .-..+.-++.+..|+++.|.+. ..|..++....++.++..+|..+.. |..+...+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQ-PKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhC-CccccccCCc
Confidence 34455566777777765543 2223445566777777777764 4566666667777777777777654 6667777788
Q ss_pred CEEeccCCCCCCHHH
Q 013423 336 KLLDLHGGWLLTEDA 350 (443)
Q Consensus 336 ~~L~l~~n~~l~~~~ 350 (443)
++++..+++ ++..+
T Consensus 114 k~~e~k~~~-~~~~~ 127 (326)
T KOG0473|consen 114 KKNEQKKTE-FFRKL 127 (326)
T ss_pred chhhhccCc-chHHH
Confidence 888888877 44333
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=52.95 E-value=11 Score=20.31 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=9.0
Q ss_pred CCCEEEcCCCCCCCCC
Q 013423 213 RLSFLNLAWTGVTKLP 228 (443)
Q Consensus 213 ~L~~L~l~~~~l~~l~ 228 (443)
+|+.|++++|.++++|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 4555666666555554
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.57 E-value=19 Score=35.73 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=20.5
Q ss_pred cCCCCCEEEcCCC--CCCchhhhccc--CCCCCCEEEeeCCCCC
Q 013423 259 NLNHLERLNLEQT--QVSDATLFPLS--TFKELIHLSLRNASLT 298 (443)
Q Consensus 259 ~~~~L~~L~l~~~--~l~~~~~~~l~--~~~~L~~L~l~~n~i~ 298 (443)
..++|..|+|++| .+.. ..++. ....|++|.+.||.+.
T Consensus 242 ~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 242 IAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred hcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccc
Confidence 3456677777776 3332 12222 2244667777777654
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=36.37 E-value=70 Score=31.32 Aligned_cols=34 Identities=9% Similarity=-0.124 Sum_probs=19.7
Q ss_pred CCCCEEEcCCCCCCchhhhcc--cCCCCCCEEEeeC
Q 013423 261 NHLERLNLEQTQVSDATLFPL--STFKELIHLSLRN 294 (443)
Q Consensus 261 ~~L~~L~l~~~~l~~~~~~~l--~~~~~L~~L~l~~ 294 (443)
..++++....|.+.++..... ..-++.+.+.+..
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccc
Confidence 347777777776666544332 2335566666644
No 90
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=32.12 E-value=0.89 Score=39.50 Aligned_cols=19 Identities=5% Similarity=-0.134 Sum_probs=8.0
Q ss_pred HHhccCCCCccEEEecCCC
Q 013423 181 LRSLQVLTKLEYLDLWGSQ 199 (443)
Q Consensus 181 ~~~l~~l~~L~~L~l~~~~ 199 (443)
|.++...+++++++...+.
T Consensus 104 p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred CccccccCCcchhhhccCc
Confidence 3334444444444444433
No 91
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=28.20 E-value=43 Score=17.93 Aligned_cols=10 Identities=40% Similarity=0.308 Sum_probs=4.1
Q ss_pred CCEEeccCCC
Q 013423 335 LKLLDLHGGW 344 (443)
Q Consensus 335 L~~L~l~~n~ 344 (443)
|++|.|....
T Consensus 2 LKtL~L~~v~ 11 (26)
T PF07723_consen 2 LKTLHLDSVV 11 (26)
T ss_pred CeEEEeeEEE
Confidence 3444444433
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.51 E-value=56 Score=39.36 Aligned_cols=29 Identities=10% Similarity=0.271 Sum_probs=13.6
Q ss_pred eeCCCCChHHHHHhcCCCCCCEEEecCcc
Q 013423 292 LRNASLTDVSLHQLSSLSKLTNLSIRDAV 320 (443)
Q Consensus 292 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 320 (443)
|++|+|+...+..|..+++|+.|+|++|.
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNP 30 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNP 30 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCc
Confidence 44444444444444444455555554443
Done!