Query 013423
Match_columns 443
No_of_seqs 281 out of 4445
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 10:18:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.3E-38 2.5E-42 326.1 0.2 346 66-435 295-725 (768)
2 3rgz_A Protein brassinosteroid 100.0 2E-37 6.8E-42 322.8 -2.6 332 90-437 294-703 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 9.2E-34 3.1E-38 278.3 10.1 348 64-432 29-413 (455)
4 3t6q_A CD180 antigen; protein- 100.0 8.1E-34 2.8E-38 288.8 9.8 379 29-435 19-497 (606)
5 3t6q_A CD180 antigen; protein- 100.0 3.3E-33 1.1E-37 284.3 10.8 385 24-435 35-521 (606)
6 4eco_A Uncharacterized protein 100.0 3.1E-34 1E-38 292.3 2.1 228 84-322 200-470 (636)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5.1E-34 1.8E-38 290.2 2.3 145 27-179 16-168 (606)
8 4eco_A Uncharacterized protein 100.0 2.9E-33 9.9E-38 285.1 6.3 347 56-428 198-601 (636)
9 2z63_A TOLL-like receptor 4, v 100.0 2.1E-33 7.3E-38 283.6 1.6 164 255-433 367-537 (570)
10 2id5_A Lingo-1, leucine rich r 100.0 3.4E-32 1.1E-36 268.7 9.2 273 64-345 31-308 (477)
11 2z7x_B TOLL-like receptor 1, v 100.0 5.5E-32 1.9E-36 270.1 10.5 338 65-430 21-484 (520)
12 4ecn_A Leucine-rich repeat pro 100.0 4.1E-32 1.4E-36 281.8 8.1 324 82-428 481-841 (876)
13 4ecn_A Leucine-rich repeat pro 100.0 1.1E-31 3.9E-36 278.5 10.5 322 84-434 442-825 (876)
14 2z81_A CD282 antigen, TOLL-lik 100.0 6.6E-32 2.2E-36 271.4 7.4 274 66-344 27-421 (549)
15 1ziw_A TOLL-like receptor 3; i 100.0 9.2E-32 3.1E-36 277.3 5.2 374 30-430 12-446 (680)
16 3j0a_A TOLL-like receptor 5; m 100.0 2E-31 6.8E-36 280.4 7.1 272 65-344 24-373 (844)
17 1z7x_W Ribonuclease inhibitor; 100.0 4.7E-31 1.6E-35 259.4 8.6 287 66-356 29-363 (461)
18 3v47_A TOLL-like receptor 5B a 100.0 2.7E-30 9.4E-35 253.5 13.1 331 30-383 18-412 (455)
19 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-32 4.6E-37 279.8 -3.7 129 24-158 34-171 (606)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-31 8.7E-36 267.7 5.0 341 65-430 52-513 (562)
21 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-31 7.6E-36 274.4 4.7 392 24-429 27-519 (680)
22 3o6n_A APL1; leucine-rich repe 100.0 2.5E-30 8.6E-35 248.6 10.4 263 65-345 45-307 (390)
23 4fmz_A Internalin; leucine ric 100.0 1.8E-28 6E-33 231.9 20.7 300 65-427 44-346 (347)
24 2id5_A Lingo-1, leucine rich r 100.0 1E-29 3.5E-34 251.0 12.6 311 30-354 19-341 (477)
25 1o6v_A Internalin A; bacterial 100.0 5.6E-29 1.9E-33 244.7 17.0 314 64-428 67-389 (466)
26 3oja_B Anopheles plasmodium-re 100.0 1.1E-29 3.8E-34 257.2 10.4 263 65-345 51-313 (597)
27 1z7x_W Ribonuclease inhibitor; 100.0 7.3E-29 2.5E-33 243.8 14.6 277 66-348 57-384 (461)
28 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-30 5E-35 273.8 2.2 280 30-323 12-376 (844)
29 2z7x_B TOLL-like receptor 1, v 100.0 3E-30 1E-34 257.5 3.6 335 68-433 3-462 (520)
30 4fmz_A Internalin; leucine ric 100.0 9.6E-28 3.3E-32 226.9 19.9 254 65-344 66-322 (347)
31 3o6n_A APL1; leucine-rich repe 99.9 6.8E-28 2.3E-32 231.6 12.9 276 65-360 69-365 (390)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.6E-29 5.6E-34 254.5 1.1 341 65-433 31-491 (562)
33 2z81_A CD282 antigen, TOLL-lik 99.9 3.7E-28 1.3E-32 244.1 9.5 171 67-243 7-184 (549)
34 2z63_A TOLL-like receptor 4, v 99.9 4.4E-29 1.5E-33 252.0 2.7 160 63-225 26-190 (570)
35 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-27 4E-32 233.7 12.1 323 65-436 42-396 (457)
36 1o6v_A Internalin A; bacterial 99.9 1.3E-26 4.5E-31 227.8 19.1 320 25-392 49-377 (466)
37 1ogq_A PGIP-2, polygalacturona 99.9 6.8E-29 2.3E-33 230.9 1.1 245 91-346 51-304 (313)
38 3oja_B Anopheles plasmodium-re 99.9 3.3E-27 1.1E-31 239.0 12.6 276 65-360 75-371 (597)
39 4g8a_A TOLL-like receptor 4; l 99.9 1.5E-28 5.2E-33 251.1 2.7 142 64-208 51-193 (635)
40 3bz5_A Internalin-J, INLJ; leu 99.9 3.9E-26 1.3E-30 223.0 17.0 293 85-428 37-353 (457)
41 1xku_A Decorin; proteoglycan, 99.9 1.6E-26 5.5E-31 216.9 13.0 264 66-345 32-305 (330)
42 1xku_A Decorin; proteoglycan, 99.9 1.2E-26 4E-31 217.8 11.8 266 63-344 50-330 (330)
43 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-28 5.6E-33 228.4 -1.1 248 65-324 50-307 (313)
44 2ft3_A Biglycan; proteoglycan, 99.9 3.2E-27 1.1E-31 221.8 7.5 263 66-345 34-306 (332)
45 2ft3_A Biglycan; proteoglycan, 99.9 4.4E-27 1.5E-31 220.8 6.1 264 64-344 53-331 (332)
46 2z80_A TOLL-like receptor 2, v 99.9 2.5E-26 8.7E-31 217.5 8.4 270 66-347 32-315 (353)
47 1jl5_A Outer protein YOPM; leu 99.9 1.8E-25 6.3E-30 218.0 12.8 353 23-438 12-422 (454)
48 4g8a_A TOLL-like receptor 4; l 99.9 2.3E-26 8E-31 234.9 5.5 142 30-179 39-188 (635)
49 3zyj_A Leucine-rich repeat-con 99.9 8.2E-25 2.8E-29 213.4 13.5 223 115-346 64-292 (440)
50 3zyi_A Leucine-rich repeat-con 99.9 1.1E-24 3.8E-29 213.2 13.4 222 115-345 75-302 (452)
51 3ogk_B Coronatine-insensitive 99.9 2.6E-25 8.9E-30 225.4 7.4 207 205-429 286-528 (592)
52 2ca6_A RAN GTPase-activating p 99.9 9.5E-24 3.2E-28 202.3 17.8 241 82-344 24-314 (386)
53 1ozn_A Reticulon 4 receptor; N 99.9 7.6E-25 2.6E-29 201.0 9.7 207 115-347 32-239 (285)
54 2ast_B S-phase kinase-associat 99.9 1.4E-23 4.7E-28 197.3 18.4 290 32-388 7-315 (336)
55 3ogk_B Coronatine-insensitive 99.9 2E-24 6.7E-29 219.0 13.1 296 57-364 66-408 (592)
56 2z66_A Variable lymphocyte rec 99.9 5.3E-25 1.8E-29 204.2 7.7 230 90-346 28-261 (306)
57 3zyi_A Leucine-rich repeat-con 99.9 2.1E-24 7.1E-29 211.3 11.8 245 67-323 56-304 (452)
58 4fcg_A Uncharacterized protein 99.9 3.8E-25 1.3E-29 206.9 6.0 223 90-344 81-312 (328)
59 3zyj_A Leucine-rich repeat-con 99.9 2.6E-24 8.9E-29 209.9 11.9 244 67-322 45-292 (440)
60 2p1m_B Transport inhibitor res 99.9 5.3E-24 1.8E-28 215.9 13.3 131 87-218 102-241 (594)
61 2z66_A Variable lymphocyte rec 99.9 2.8E-24 9.6E-29 199.4 7.4 231 63-323 26-262 (306)
62 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-25 9.8E-30 206.9 0.4 254 67-363 12-266 (317)
63 2ca6_A RAN GTPase-activating p 99.9 2.5E-23 8.4E-28 199.5 13.4 255 111-383 28-320 (386)
64 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-23 5.6E-28 192.1 11.1 225 68-323 14-239 (285)
65 1jl5_A Outer protein YOPM; leu 99.9 1.1E-22 3.7E-27 198.5 17.4 281 91-435 132-437 (454)
66 3o53_A Protein LRIM1, AGAP0063 99.9 8.8E-24 3E-28 196.9 8.5 249 117-392 12-264 (317)
67 4fcg_A Uncharacterized protein 99.9 1.1E-23 3.8E-28 196.9 7.6 225 65-322 81-314 (328)
68 2z80_A TOLL-like receptor 2, v 99.9 8.4E-23 2.9E-27 193.3 13.5 238 141-392 53-303 (353)
69 3goz_A Leucine-rich repeat-con 99.9 5.2E-23 1.8E-27 195.3 11.8 255 70-349 3-299 (362)
70 1wwl_A Monocyte differentiatio 99.9 1.9E-24 6.5E-29 200.9 1.0 203 113-344 93-307 (312)
71 2ast_B S-phase kinase-associat 99.9 7.8E-22 2.7E-26 185.4 17.7 234 65-330 70-314 (336)
72 1wwl_A Monocyte differentiatio 99.9 1.4E-24 5E-29 201.7 -1.5 199 163-380 94-310 (312)
73 3goz_A Leucine-rich repeat-con 99.9 6.1E-22 2.1E-26 187.9 15.5 269 95-386 3-304 (362)
74 3oja_A Leucine-rich immune mol 99.9 8.4E-23 2.9E-27 201.2 8.9 237 81-359 21-262 (487)
75 3oja_A Leucine-rich immune mol 99.9 3.5E-23 1.2E-27 203.9 5.4 232 65-317 34-270 (487)
76 2p1m_B Transport inhibitor res 99.9 5.1E-21 1.7E-25 194.0 20.5 221 139-364 288-536 (594)
77 2z62_A TOLL-like receptor 4, v 99.9 3E-22 1E-26 182.8 8.8 90 255-345 143-236 (276)
78 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-21 6.7E-26 195.5 14.9 245 65-356 61-306 (622)
79 2z62_A TOLL-like receptor 4, v 99.8 1.4E-21 4.8E-26 178.3 9.9 209 90-323 28-238 (276)
80 3rfs_A Internalin B, repeat mo 99.8 7.2E-21 2.5E-25 173.1 13.8 178 139-345 40-217 (272)
81 4glp_A Monocyte differentiatio 99.8 4.2E-21 1.5E-25 178.1 11.2 223 114-345 63-306 (310)
82 3rfs_A Internalin B, repeat mo 99.8 1.9E-21 6.4E-26 177.0 8.6 206 88-331 39-244 (272)
83 2o6q_A Variable lymphocyte rec 99.8 1.5E-20 5E-25 170.9 13.7 201 116-345 17-217 (270)
84 2o6q_A Variable lymphocyte rec 99.8 7.6E-21 2.6E-25 172.8 10.2 202 91-322 17-218 (270)
85 3g06_A SSPH2 (leucine-rich rep 99.8 7E-21 2.4E-25 191.5 10.8 270 65-392 40-310 (622)
86 1p9a_G Platelet glycoprotein I 99.8 4.9E-20 1.7E-24 169.0 12.8 204 111-347 6-209 (290)
87 1h6u_A Internalin H; cell adhe 99.8 1.1E-19 3.6E-24 168.4 14.9 190 113-344 39-228 (308)
88 1h6u_A Internalin H; cell adhe 99.8 1.2E-19 4.1E-24 168.0 14.0 195 87-324 38-232 (308)
89 4glp_A Monocyte differentiatio 99.8 1.2E-20 4.1E-25 175.1 6.1 226 66-323 65-308 (310)
90 1p9a_G Platelet glycoprotein I 99.8 9.3E-20 3.2E-24 167.1 9.1 203 86-322 6-208 (290)
91 2xwt_C Thyrotropin receptor; s 99.8 6.3E-20 2.2E-24 163.6 7.2 194 141-344 32-237 (239)
92 3m19_A Variable lymphocyte rec 99.8 7.6E-19 2.6E-23 157.8 11.4 176 142-345 16-191 (251)
93 2xwt_C Thyrotropin receptor; s 99.8 1E-19 3.6E-24 162.2 3.9 197 91-319 32-236 (239)
94 3m19_A Variable lymphocyte rec 99.8 1.3E-18 4.4E-23 156.3 9.2 179 116-323 15-193 (251)
95 1h6t_A Internalin B; cell adhe 99.7 4.3E-17 1.5E-21 149.5 14.4 168 138-344 44-211 (291)
96 1h6t_A Internalin B; cell adhe 99.7 2.3E-17 7.9E-22 151.3 12.3 175 112-326 43-217 (291)
97 1m9s_A Internalin B; cell inva 99.7 7.9E-17 2.7E-21 161.8 10.7 173 112-324 40-212 (605)
98 1m9s_A Internalin B; cell inva 99.7 3E-16 1E-20 157.6 14.2 165 163-345 42-209 (605)
99 2o6s_A Variable lymphocyte rec 99.7 4E-16 1.4E-20 135.7 13.0 133 188-345 28-160 (208)
100 3cvr_A Invasion plasmid antige 99.7 5E-16 1.7E-20 154.3 12.8 186 116-356 60-252 (571)
101 4ezg_A Putative uncharacterize 99.6 3.1E-16 1.1E-20 135.1 9.0 149 163-344 43-192 (197)
102 2o6s_A Variable lymphocyte rec 99.6 2.1E-16 7.2E-21 137.5 7.7 160 141-332 29-188 (208)
103 4ezg_A Putative uncharacterize 99.6 2.5E-16 8.6E-21 135.7 7.9 148 66-224 45-193 (197)
104 2v9t_B SLIT homolog 2 protein 99.6 5.4E-16 1.8E-20 136.0 8.7 135 188-347 32-166 (220)
105 1xeu_A Internalin C; cellular 99.6 4.5E-16 1.5E-20 140.4 8.2 165 142-324 21-187 (263)
106 3cvr_A Invasion plasmid antige 99.6 4.6E-16 1.6E-20 154.6 8.6 188 89-308 58-253 (571)
107 2xot_A Amphoterin-induced prot 99.6 3.4E-16 1.2E-20 148.2 7.1 159 165-348 40-204 (361)
108 2v9t_B SLIT homolog 2 protein 99.6 7.9E-16 2.7E-20 135.0 8.7 153 143-323 14-166 (220)
109 2v70_A SLIT-2, SLIT homolog 2 99.6 9.9E-16 3.4E-20 134.3 8.2 91 256-346 76-166 (220)
110 4ay9_X Follicle-stimulating ho 99.6 2.3E-16 7.9E-21 148.7 4.1 136 90-226 30-168 (350)
111 4ay9_X Follicle-stimulating ho 99.6 3.2E-16 1.1E-20 147.8 4.6 235 93-344 12-257 (350)
112 3e6j_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 131.7 10.8 151 166-345 21-171 (229)
113 3sb4_A Hypothetical leucine ri 99.6 1.2E-15 4.1E-20 142.5 7.8 240 89-344 24-308 (329)
114 2v70_A SLIT-2, SLIT homolog 2 99.6 3.8E-15 1.3E-19 130.5 9.0 134 165-323 33-167 (220)
115 1xeu_A Internalin C; cellular 99.6 2.6E-15 8.7E-20 135.5 8.0 164 163-345 18-184 (263)
116 2xot_A Amphoterin-induced prot 99.6 2E-15 6.7E-20 142.9 7.0 160 116-298 40-202 (361)
117 3e6j_A Variable lymphocyte rec 99.6 8.7E-15 3E-19 129.1 9.7 152 143-323 22-173 (229)
118 1dce_A Protein (RAB geranylger 99.6 5E-17 1.7E-21 162.2 -5.3 206 112-340 346-567 (567)
119 3sb4_A Hypothetical leucine ri 99.5 1.5E-15 5.2E-20 141.8 4.0 259 66-340 26-328 (329)
120 1dce_A Protein (RAB geranylger 99.5 3.4E-16 1.2E-20 156.2 -4.2 201 87-316 346-567 (567)
121 3un9_A NLR family member X1; l 99.5 4.1E-14 1.4E-18 133.8 10.3 194 139-350 71-286 (372)
122 3un9_A NLR family member X1; l 99.5 5.8E-14 2E-18 132.8 10.5 110 90-201 72-196 (372)
123 2je0_A Acidic leucine-rich nuc 99.5 1E-13 3.5E-18 113.5 9.4 128 187-341 16-148 (149)
124 2ell_A Acidic leucine-rich nuc 99.5 6.7E-14 2.3E-18 117.1 8.1 131 188-324 24-162 (168)
125 4fdw_A Leucine rich hypothetic 99.5 8E-14 2.7E-18 133.1 8.9 263 65-344 113-381 (401)
126 2wfh_A SLIT homolog 2 protein 99.5 1.8E-13 6.2E-18 117.2 10.0 126 215-347 13-140 (193)
127 1w8a_A SLIT protein; signaling 99.5 1.6E-13 5.6E-18 117.4 9.3 127 215-346 11-139 (192)
128 4b8c_D Glucose-repressible alc 99.5 2.8E-14 9.7E-19 146.8 5.2 163 256-431 242-408 (727)
129 2je0_A Acidic leucine-rich nuc 99.5 4.3E-14 1.5E-18 115.8 5.1 108 66-177 18-126 (149)
130 2ell_A Acidic leucine-rich nuc 99.4 2.6E-14 8.8E-19 119.7 2.9 134 65-226 24-161 (168)
131 4b8c_D Glucose-repressible alc 99.4 1.7E-14 5.8E-19 148.5 -1.2 176 133-323 217-405 (727)
132 4fdw_A Leucine rich hypothetic 99.4 1.2E-12 4.2E-17 124.9 10.7 238 87-345 110-357 (401)
133 2o6r_A Variable lymphocyte rec 99.4 1.9E-12 6.6E-17 109.2 10.7 126 215-346 10-137 (177)
134 1w8a_A SLIT protein; signaling 99.4 1.1E-12 3.7E-17 112.3 8.2 130 167-324 11-141 (192)
135 1a9n_A U2A', U2A'; complex (nu 99.4 8.1E-13 2.8E-17 111.4 6.6 131 185-344 16-151 (176)
136 2o6r_A Variable lymphocyte rec 99.3 4.3E-12 1.5E-16 107.1 9.4 112 188-324 28-139 (177)
137 2wfh_A SLIT homolog 2 protein 99.3 4.7E-12 1.6E-16 108.3 8.8 127 167-322 13-139 (193)
138 1ds9_A Outer arm dynein; leuci 99.3 6.2E-14 2.1E-18 120.8 -3.9 110 207-325 43-156 (198)
139 1a9n_A U2A', U2A'; complex (nu 99.3 4.4E-12 1.5E-16 106.8 7.4 136 159-324 14-155 (176)
140 3e4g_A ATP synthase subunit S, 99.3 2.3E-11 7.9E-16 100.5 9.7 105 261-365 61-173 (176)
141 1ds9_A Outer arm dynein; leuci 99.3 5.6E-14 1.9E-18 121.0 -6.4 129 183-323 43-186 (198)
142 3g39_A Variable lymphocyte rec 99.2 4E-11 1.4E-15 100.2 7.9 101 261-361 30-134 (170)
143 4fs7_A Uncharacterized protein 99.2 2.1E-11 7.1E-16 116.7 5.8 266 64-343 70-376 (394)
144 2r9u_A Variable lymphocyte rec 99.1 6.6E-11 2.3E-15 99.3 6.9 85 261-345 33-117 (174)
145 2ra8_A Uncharacterized protein 99.1 1.3E-09 4.6E-14 102.0 14.8 152 204-364 164-336 (362)
146 3g39_A Variable lymphocyte rec 99.1 2.6E-10 9E-15 95.2 8.6 104 215-324 12-117 (170)
147 4gt6_A Cell surface protein; l 99.1 5.6E-10 1.9E-14 106.7 10.6 261 66-344 65-368 (394)
148 2r9u_A Variable lymphocyte rec 99.0 6.2E-10 2.1E-14 93.3 8.6 104 215-324 15-120 (174)
149 1io0_A Tropomodulin; LRR prote 99.0 1.7E-09 5.9E-14 91.5 8.5 94 255-349 59-166 (185)
150 2ra8_A Uncharacterized protein 98.9 1.9E-09 6.3E-14 101.1 9.1 85 259-344 250-341 (362)
151 4fs7_A Uncharacterized protein 98.9 7E-10 2.4E-14 106.0 5.8 238 84-341 65-328 (394)
152 2ifg_A High affinity nerve gro 98.9 1.5E-09 5.2E-14 101.8 7.9 105 235-348 12-118 (347)
153 3e4g_A ATP synthase subunit S, 98.9 2.3E-09 7.8E-14 88.5 7.1 84 66-150 62-149 (176)
154 1io0_A Tropomodulin; LRR prote 98.9 3.7E-09 1.3E-13 89.5 8.6 128 181-325 29-167 (185)
155 4gt6_A Cell surface protein; l 98.8 7.9E-09 2.7E-13 98.7 8.6 262 64-344 86-389 (394)
156 2ifg_A High affinity nerve gro 98.6 3.1E-08 1E-12 92.8 6.1 89 111-201 27-116 (347)
157 4h09_A Hypothetical leucine ri 98.6 1E-07 3.4E-12 90.5 8.4 256 65-340 46-340 (379)
158 4h09_A Hypothetical leucine ri 98.4 9.6E-07 3.3E-11 83.7 9.5 241 84-343 40-320 (379)
159 1pgv_A TMD-1, tropomodulin TMD 98.2 3.3E-06 1.1E-10 70.9 8.1 90 255-344 64-168 (197)
160 1pgv_A TMD-1, tropomodulin TMD 98.1 5.4E-05 1.9E-09 63.5 12.4 118 81-199 32-168 (197)
161 3rw6_A Nuclear RNA export fact 98.0 5.6E-06 1.9E-10 73.5 5.3 80 283-364 168-256 (267)
162 3rw6_A Nuclear RNA export fact 97.9 1.2E-05 4.2E-10 71.3 5.2 81 258-339 167-257 (267)
163 3rfe_A Platelet glycoprotein I 95.3 0.0082 2.8E-07 46.7 2.7 59 288-348 11-70 (130)
164 3rfe_A Platelet glycoprotein I 94.0 0.04 1.4E-06 42.8 3.5 36 286-321 32-67 (130)
165 2lz0_A Uncharacterized protein 59.1 4.2 0.00014 29.4 1.8 41 277-318 12-52 (100)
166 2lz0_A Uncharacterized protein 52.6 5 0.00017 29.0 1.3 37 86-124 16-52 (100)
167 4h62_V Mediator of RNA polymer 27.0 36 0.0012 17.4 1.6 15 3-17 11-25 (31)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.3e-38 Score=326.06 Aligned_cols=346 Identities=19% Similarity=0.194 Sum_probs=211.2
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCC-hHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCC-CCc
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT-SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIS-TLE 143 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~-~L~ 143 (443)
+|++|++++|. +....+..++.+++|++|++++|. +. ......+.++++|++|++++| .+++..+..+..++ +|+
T Consensus 295 ~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 295 TLTGLDLSGNH-FYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLL 371 (768)
T ss_dssp TCSEEECCSSE-EEECCCGGGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSS-EEEECCCTTHHHHTTTCS
T ss_pred cCCEEECcCCc-CCCccchHHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCC-ccCccccHHHHhhhcCCc
Confidence 44444444442 222233344444555555555444 22 212222444455555555544 23222222333333 455
Q ss_pred EEEcccccCCHHHHHHhcC--CCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCC
Q 013423 144 KLWLSETGLTADGIALLSS--LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221 (443)
Q Consensus 144 ~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 221 (443)
+|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..++.+++|+.|++++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 5555555444433333333 55666677766666655566667777777777777777666677777777777777777
Q ss_pred CCCCC-----CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCC
Q 013423 222 TGVTK-----LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS 296 (443)
Q Consensus 222 ~~l~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~ 296 (443)
|.+.+ +..+++|+.|++++|.+.+. +| ..+..+++|++|++++|.+++..|.+++.+++|+.|++++|+
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~----~p--~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGE----IP--SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSC----CC--GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred CcccCcCCHHHcCCCCceEEEecCCcccCc----CC--HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 77663 33567777777777776653 45 556677777777777777777777777777777777777777
Q ss_pred CChHHHHHhcCCCCCCEEEecCcccCchhhhhc-----------------------------------------------
Q 013423 297 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF----------------------------------------------- 329 (443)
Q Consensus 297 i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l----------------------------------------------- 329 (443)
+++.+|..+..+++|+.|++++|++++..|..+
T Consensus 526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (768)
T 3rgz_A 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605 (768)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence 776777777777777777777777664433322
Q ss_pred -----------------------CCCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCCCCCCch
Q 013423 330 -----------------------KPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRT 386 (443)
Q Consensus 330 -----------------------~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~~ 386 (443)
..+++|+.|++++|+ +++..+.. ...++.++.. . +.+|.++|.+|+.|
T Consensus 606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~-l~g~ip~~-l~~l~~L~~L-~------Ls~N~l~g~ip~~l 676 (768)
T 3rgz_A 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM-LSGYIPKE-IGSMPYLFIL-N------LGHNDISGSIPDEV 676 (768)
T ss_dssp GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC-CBSCCCGG-GGGCTTCCEE-E------CCSSCCCSCCCGGG
T ss_pred ccccccccccccceecccCchhhhccccccEEECcCCc-ccccCCHH-HhccccCCEE-e------CcCCccCCCCChHH
Confidence 123567777777776 33222222 2344444443 1 45778888888888
Q ss_pred hhhhhh------hhhcCCCCCCChhhHHhhhhhcHHHHHHhhcccccccCCCCCc
Q 013423 387 SLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARPDDSS 435 (443)
Q Consensus 387 ~~l~~L------~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~n~~~~~~p~~~~ 435 (443)
+.++.| +|+++|.+|.. +..+++|+.||+++|+++|.||+...
T Consensus 677 ~~L~~L~~LdLs~N~l~g~ip~~------l~~l~~L~~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 677 GDLRGLNILDLSSNKLDGRIPQA------MSALTMLTEIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp GGCTTCCEEECCSSCCEECCCGG------GGGCCCCSEEECCSSEEEEECCSSSS
T ss_pred hCCCCCCEEECCCCcccCcCChH------HhCCCCCCEEECcCCcccccCCCchh
Confidence 777766 77777888877 66788888888888888888887543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-37 Score=322.80 Aligned_cols=332 Identities=20% Similarity=0.183 Sum_probs=232.8
Q ss_pred CCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCC-HHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCC-CCC
Q 013423 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVT-DAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQ-NLS 167 (443)
Q Consensus 90 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~ 167 (443)
++|++|++++|. ++...+..++++++|++|++++| .++ ......+..+++|++|++++|.+.+..|..+..++ +|+
T Consensus 294 ~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 294 DTLTGLDLSGNH-FYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp TTCSEEECCSSE-EEECCCGGGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred CcCCEEECcCCc-CCCccchHHhcCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 444444444443 33233334444555555555554 232 11122244555555555555554433343444433 555
Q ss_pred EEEecCCCCChhhHHhccC--CCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCC-----CCCCCCCCEEeccc
Q 013423 168 VLDLGGLPVTDLVLRSLQV--LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNLSF 240 (443)
Q Consensus 168 ~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~~~~L~~L~l~~ 240 (443)
+|++++|.+.+..+..+.. +++|++|++++|.+.+..|..+.++++|+.|++++|.+.+ +..+++|+.|++++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 5555555544433334433 6678888888888877788888888899999999887764 45678899999999
Q ss_pred ccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcc
Q 013423 241 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 320 (443)
Q Consensus 241 ~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 320 (443)
|.+.+. +| ..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..++.+++|++|++++|+
T Consensus 452 n~l~~~----~p--~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 452 NMLEGE----IP--QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp SCCCSC----CC--GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred CcccCc----CC--HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 888764 56 677889999999999999998888889999999999999999998888899999999999999999
Q ss_pred cCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCcee-------------------------------------
Q 013423 321 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEV------------------------------------- 363 (443)
Q Consensus 321 i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~------------------------------------- 363 (443)
+++..|..+..+++|++|++++|+ ++...+..+.........
T Consensus 526 l~~~~p~~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 526 FSGNIPAELGDCRSLIWLDLNTNL-FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSE-EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred ccCcCCHHHcCCCCCCEEECCCCc-cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 998888889899999999999997 332222222111000000
Q ss_pred --------------------------eeeecccCCCCCCCCCCCCCCchhhhhhh------hhhcCCCCCCChhhHHhhh
Q 013423 364 --------------------------WHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRL 411 (443)
Q Consensus 364 --------------------------~~~~~~~~~~~~~~l~~~~p~~~~~l~~L------~n~l~~~~p~~~~~ld~~~ 411 (443)
...+..+ .+.+|.+.|.+|..|+.++.| +|.++|.+|.. +.
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L-dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~------l~ 677 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL-DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE------VG 677 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE-ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG------GG
T ss_pred hccccccccccccceecccCchhhhccccccEE-ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH------Hh
Confidence 0011111 245799999999999998887 89999999999 77
Q ss_pred hhcHHHHHHhhcccccccCCCCCccc
Q 013423 412 KYSREELLELQYSSLSLARPDDSSTQ 437 (443)
Q Consensus 412 ~l~~L~~L~l~~n~~~~~~p~~~~~~ 437 (443)
++++|+.||+++|.++|.+|......
T Consensus 678 ~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 678 DLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp GCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CCCCCCEEECCCCcccCcCChHHhCC
Confidence 99999999999999999999875543
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.2e-34 Score=278.29 Aligned_cols=348 Identities=14% Similarity=0.118 Sum_probs=253.0
Q ss_pred CCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCc
Q 013423 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (443)
Q Consensus 64 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~ 143 (443)
++++++|++++|. +....+..++++++|++|++++|..........+.++++|++|++++| .++...+..|..+++|+
T Consensus 29 ~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 29 PAHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLE 106 (455)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCC
T ss_pred CCccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCC
Confidence 3589999999986 455456778999999999999997323444567889999999999999 67766677889999999
Q ss_pred EEEcccccCCHHHHHH--hcCCCCCCEEEecCCCCChhhHHh-ccCCCCccEEEecCCCCCchhhHhhcCC--CCCCEEE
Q 013423 144 KLWLSETGLTADGIAL--LSSLQNLSVLDLGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMF--PRLSFLN 218 (443)
Q Consensus 144 ~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~l~~l--~~L~~L~ 218 (443)
+|++++|.+.+..+.. +..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+ .+|+.++
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence 9999999998765654 889999999999999998875554 7899999999999999988777777755 7899999
Q ss_pred cCCCCCCCCC-------------CCCCCCEEecccccccCCchhhhh-hHHHhccCCCCCEEEcCCCCCCchhh------
Q 013423 219 LAWTGVTKLP-------------NISSLECLNLSFIQQVGAETDLVL-SLTALQNLNHLERLNLEQTQVSDATL------ 278 (443)
Q Consensus 219 l~~~~l~~l~-------------~~~~L~~L~l~~~~~~~~~~~~~~-~l~~~~~~~~L~~L~l~~~~l~~~~~------ 278 (443)
+++|.+..++ .+++|+.|++++|.+.+. .| .+.......+|+.|++++|...+...
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES----MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH----HHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCccccc----chhhhhccccccceeeEeeccccccccccchhhhc
Confidence 9999888744 447899999999987653 22 11112223667777777664333111
Q ss_pred ----hccc--CCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHH
Q 013423 279 ----FPLS--TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAIL 352 (443)
Q Consensus 279 ----~~l~--~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~ 352 (443)
..+. ..++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.. +. ...
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~-~~~ 340 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GS-IDS 340 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CE-ECG
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-CC-cCh
Confidence 1111 235677777777777766666677777777777777777777666677777777777777763 32 112
Q ss_pred HHHHhCCCceeeeeecccCCCCCCCCCCCCCCchhhhhhh------hhhcCCCCCCChhhHHhhhhhcHHHHHHhhcccc
Q 013423 353 QFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSL 426 (443)
Q Consensus 353 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~~~~l~~L------~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~n~~ 426 (443)
.....++.++.. . +.+|.+.+..|.+|..+++| +|.+.+ +|... +..+++|+.|++++|++
T Consensus 341 ~~~~~l~~L~~L-~------Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~-----~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 341 RMFENLDKLEVL-D------LSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGI-----FDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp GGGTTCTTCCEE-E------CCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTT-----TTTCTTCCEEECCSSCB
T ss_pred hHhcCcccCCEE-E------CCCCcccccChhhccccccccEEECCCCcccc-CCHhH-----hccCCcccEEEccCCCc
Confidence 222334445443 1 34666766667777766666 666665 44442 56788999999999999
Q ss_pred cccCCC
Q 013423 427 SLARPD 432 (443)
Q Consensus 427 ~~~~p~ 432 (443)
++..|.
T Consensus 408 ~~~~~~ 413 (455)
T 3v47_A 408 DCSCPR 413 (455)
T ss_dssp CCCTTT
T ss_pred ccCCCc
Confidence 998773
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.1e-34 Score=288.76 Aligned_cols=379 Identities=19% Similarity=0.145 Sum_probs=215.8
Q ss_pred hccccccccchHHHHHHHHHHHhcccc-------chhhHhhhCCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCC
Q 013423 29 RQRRSLERLPAHLADSLLRHLIRRRLI-------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCR 101 (443)
Q Consensus 29 ~~~~~l~~lp~~l~~~~l~~L~~~~~~-------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 101 (443)
.....+..+|..++. .++.+++. .|..+..+ ++|++|++++|. +....+..|+.+++|++|++++|.
T Consensus 19 c~~~~l~~iP~~l~~----~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 19 CENLGLNEIPGTLPN----STECLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp CTTSCCSSCCTTSCT----TCCEEECTTCCCSEECTTTSTTC-TTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCCCCcccCcCCCCC----cCcEEEccCCccCcCChhHhccC-ccceEEECCCCc-cceeChhhccCccccCeeeCCCCc
Confidence 345667777776554 12222221 33344443 357777777764 333444556677777777777776
Q ss_pred CCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhH
Q 013423 102 RVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVL 181 (443)
Q Consensus 102 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 181 (443)
+....+..++++++|++|++++| .++...+..+..+++|++|++++|.+.......+..+++|++|++++|.+....+
T Consensus 93 -l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 93 -LIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp -CSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred -ccccChhhhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 55545556677777777777776 5555444556677777777777777766433344457777777777777776666
Q ss_pred HhccCCCCcc--EEEecCCCCCchhhHh----------------------------------------------------
Q 013423 182 RSLQVLTKLE--YLDLWGSQVSNRGAAV---------------------------------------------------- 207 (443)
Q Consensus 182 ~~l~~l~~L~--~L~l~~~~l~~~~~~~---------------------------------------------------- 207 (443)
..+..+++|+ .|++++|.+.+..+..
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 6666777666 6666666554332222
Q ss_pred -----------------------hcCCCCCCEEEcCCCCCCCC----CCCCCCCEEecccccccCCchhhhhhHHHhccC
Q 013423 208 -----------------------LKMFPRLSFLNLAWTGVTKL----PNISSLECLNLSFIQQVGAETDLVLSLTALQNL 260 (443)
Q Consensus 208 -----------------------l~~l~~L~~L~l~~~~l~~l----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~ 260 (443)
|..+++|+.|++++|.++.+ ..+++|+.|++++|.+.+. .| ..+..+
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~----~~--~~~~~l 324 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL----CQ--ISASNF 324 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG----GG--GCGGGC
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC----ch--hhhhcc
Confidence 33344455555555444432 2344555555555544321 12 234445
Q ss_pred CCCCEEEcCCCCCCchhhh-cccCCCCCCEEEeeCCCCChHH--HHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCE
Q 013423 261 NHLERLNLEQTQVSDATLF-PLSTFKELIHLSLRNASLTDVS--LHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKL 337 (443)
Q Consensus 261 ~~L~~L~l~~~~l~~~~~~-~l~~~~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~ 337 (443)
++|++|++++|.+.+..+. .+..+++|++|++++|.+++.. +..+..+++|++|++++|++++..+..+..+++|++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 5555555555554432222 2455556666666666555443 445556666666666666666555555666666666
Q ss_pred EeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCCCCCCchhhhhhh------hhhcCCC-CC--CChhhHH
Q 013423 338 LDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDP-MP--MSHSFLD 408 (443)
Q Consensus 338 L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~~~~l~~L------~n~l~~~-~p--~~~~~ld 408 (443)
|++++|+. +..........++.++.. . +.+|.+.+..|..+..+++| +|.+.+. +| ..
T Consensus 405 L~l~~n~l-~~~~~~~~~~~l~~L~~L-~------l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----- 471 (606)
T 3t6q_A 405 LDLAFTRL-KVKDAQSPFQNLHLLKVL-N------LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS----- 471 (606)
T ss_dssp EECTTCCE-ECCTTCCTTTTCTTCCEE-E------CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG-----
T ss_pred EECCCCcC-CCcccchhhhCcccCCEE-E------CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchh-----
Confidence 66666652 211111112233444433 1 34667777677777766666 5555431 12 23
Q ss_pred hhhhhcHHHHHHhhcccccccCCCCCc
Q 013423 409 QRLKYSREELLELQYSSLSLARPDDSS 435 (443)
Q Consensus 409 ~~~~l~~L~~L~l~~n~~~~~~p~~~~ 435 (443)
+..+++|+.|++++|.+++..|....
T Consensus 472 -~~~l~~L~~L~Ls~n~l~~~~~~~~~ 497 (606)
T 3t6q_A 472 -LQTLGRLEILVLSFCDLSSIDQHAFT 497 (606)
T ss_dssp -GGGCTTCCEEECTTSCCCEECTTTTT
T ss_pred -hccCCCccEEECCCCccCccChhhhc
Confidence 56788888888888888887766543
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=3.3e-33 Score=284.28 Aligned_cols=385 Identities=16% Similarity=0.132 Sum_probs=276.7
Q ss_pred HHHHhhccccccccch-HHHHHHHHHHHhcccc-------chhhHhhhCCCccEEEecCCCCCCHHHHHHhcCCCCCcEE
Q 013423 24 VQKWRRQRRSLERLPA-HLADSLLRHLIRRRLI-------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSL 95 (443)
Q Consensus 24 ~~~~~~~~~~l~~lp~-~l~~~~l~~L~~~~~~-------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 95 (443)
++.+.++.+.+..+++ .+.. ++.|+.+++. .|..+..+ ++|++|++++|. +....+..++.+++|++|
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSR--LINLTFLDLTRCQIYWIHEDTFQSQ-HRLDTLVLTANP-LIFMAETALSGPKALKHL 110 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTT--CTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTCC-CSEECTTTTSSCTTCCEE
T ss_pred CcEEEccCCccCcCChhHhcc--CccceEEECCCCccceeChhhccCc-cccCeeeCCCCc-ccccChhhhcccccccEe
Confidence 3556667777777744 4444 5666665553 35555543 478999999885 444445677888999999
Q ss_pred eecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCC--EEEecC
Q 013423 96 NVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS--VLDLGG 173 (443)
Q Consensus 96 ~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~ 173 (443)
++++|. ++...+..+.++++|++|++++| .++......+..+++|++|++++|.+....+..++.+++|+ .|++++
T Consensus 111 ~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 111 FFIQTG-ISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp ECTTSC-CSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred eccccC-cccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence 999887 66655667788889999999988 56543334555688899999999988887777888888888 778877
Q ss_pred CCCChhhH------------------------------------------------------------------------
Q 013423 174 LPVTDLVL------------------------------------------------------------------------ 181 (443)
Q Consensus 174 ~~~~~~~~------------------------------------------------------------------------ 181 (443)
|.+.+..+
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 76553221
Q ss_pred ---HhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCC-----CCCCCCCCEEecccccccCCchhhhhh
Q 013423 182 ---RSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNLSFIQQVGAETDLVLS 253 (443)
Q Consensus 182 ---~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~ 253 (443)
..++.+++|++|++++|.++ .+|..+..+++|+.|++++|.+.. +..+++|+.|++++|.+.+. ++.
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~ 343 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE----LGT 343 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB----CCS
T ss_pred cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc----cch
Confidence 12455678888888888877 567778888899999999888775 45678899999998876642 331
Q ss_pred HHHhccCCCCCEEEcCCCCCCchh--hhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhh-hcC
Q 013423 254 LTALQNLNHLERLNLEQTQVSDAT--LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG-SFK 330 (443)
Q Consensus 254 l~~~~~~~~L~~L~l~~~~l~~~~--~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-~l~ 330 (443)
..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+. .+.
T Consensus 344 -~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 344 -GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp -STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred -hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 34677888999999998888755 66678888999999999888877777888888999999999888776553 366
Q ss_pred CCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCC---CCCCchhhhhhh------hhhcCCCCC
Q 013423 331 PPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNG---PSPSRTSLRASL------VKQKQDPMP 401 (443)
Q Consensus 331 ~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~---~~p~~~~~l~~L------~n~l~~~~p 401 (443)
.+++|++|++++|.. +.. .......++.++.. . +.+|.+.+ ..+..+..+++| +|.+.+..|
T Consensus 423 ~l~~L~~L~l~~n~l-~~~-~~~~~~~l~~L~~L-~------L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLL-DIS-SEQLFDGLPALQHL-N------LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp TCTTCCEEECTTCCC-BTT-CTTTTTTCTTCCEE-E------CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccCCEEECCCCcc-CCc-CHHHHhCCCCCCEE-E------CCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 788899999998874 322 12222345555544 2 35666664 223556666666 666766666
Q ss_pred CChhhHHhhhhhcHHHHHHhhcccccccCCCCCc
Q 013423 402 MSHSFLDQRLKYSREELLELQYSSLSLARPDDSS 435 (443)
Q Consensus 402 ~~~~~ld~~~~l~~L~~L~l~~n~~~~~~p~~~~ 435 (443)
.. +..+++|+.|++++|.+++..|+...
T Consensus 494 ~~------~~~l~~L~~L~Ls~N~l~~~~~~~l~ 521 (606)
T 3t6q_A 494 HA------FTSLKMMNHVDLSHNRLTSSSIEALS 521 (606)
T ss_dssp TT------TTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred hh------hccccCCCEEECCCCccCcCChhHhC
Confidence 66 66888899999999998887765443
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=3.1e-34 Score=292.31 Aligned_cols=228 Identities=14% Similarity=0.192 Sum_probs=110.0
Q ss_pred HHhcCCCCCcEEeecCCCCCChH-----------------HHHhcc--CCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 84 AYLGAFRYLRSLNVADCRRVTSS-----------------ALWALT--GMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 84 ~~~~~~~~L~~L~L~~~~~~~~~-----------------~~~~l~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
..++++++|++|++++|. ++.. .+..++ ++++|++|++++| .+.+..+..++.+++|++
T Consensus 200 ~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp GGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSSCCTTTTTCSSCCE
T ss_pred HHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCccChHHHhcCCCCCE
Confidence 344555555555555554 4432 334444 5555555555555 333333444555555555
Q ss_pred EEccccc-CCH-HHHHHhcCC------CCCCEEEecCCCCChhhHH--hccCCCCccEEEecCCCCCchhhHhhcCCCCC
Q 013423 145 LWLSETG-LTA-DGIALLSSL------QNLSVLDLGGLPVTDLVLR--SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL 214 (443)
Q Consensus 145 L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L 214 (443)
|++++|+ +++ ..|..+..+ ++|++|++++|.++. .+. .++.+++|++|++++|.+.+.+| .+..+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 5555554 554 444444433 555555555555552 233 45555555555555555554444 44455555
Q ss_pred CEEEcCCCCCCCCC----CCCC-CCEEecccccccCCchhhhhhHHHhccC--CCCCEEEcCCCCCCchhhhccc-----
Q 013423 215 SFLNLAWTGVTKLP----NISS-LECLNLSFIQQVGAETDLVLSLTALQNL--NHLERLNLEQTQVSDATLFPLS----- 282 (443)
Q Consensus 215 ~~L~l~~~~l~~l~----~~~~-L~~L~l~~~~~~~~~~~~~~~l~~~~~~--~~L~~L~l~~~~l~~~~~~~l~----- 282 (443)
+.|++++|.+..++ .+++ |+.|++++|.+.. +| ..+... ++|+.|++++|.+++..|..+.
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-----lp--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-----IP--NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-----CC--SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-----cc--hhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 55555555444322 3344 5555555554432 33 222222 2455555555555544444444
Q ss_pred --CCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccC
Q 013423 283 --TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 322 (443)
Q Consensus 283 --~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~ 322 (443)
.+++|+.|++++|.++...+..+..+++|++|++++|+++
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 4445555555555554333333344455555555555554
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=5.1e-34 Score=290.21 Aligned_cols=145 Identities=17% Similarity=0.160 Sum_probs=98.6
Q ss_pred HhhccccccccchHHHHHHHHHHHhcccc-------chhhHhhhCCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecC
Q 013423 27 WRRQRRSLERLPAHLADSLLRHLIRRRLI-------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVAD 99 (443)
Q Consensus 27 ~~~~~~~l~~lp~~l~~~~l~~L~~~~~~-------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~ 99 (443)
+......+..+|..++. .++.+++. .+..+..+ ++|++|++++|. +....+..++.+++|++|++++
T Consensus 16 ~~c~~~~l~~ip~~~~~----~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 16 YQCMDQKLSKVPDDIPS----STKNIDLSFNPLKILKSYSFSNF-SELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp EECTTSCCSSCCTTSCT----TCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTT
T ss_pred eEccCCCcccCCCCCCC----CcCEEECCCCCcCEeChhhccCC-ccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCC
Confidence 33455778888876542 23333322 33344443 368888888875 3443345677788888888888
Q ss_pred CCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCH-HHHHHhcCCCCCCEEEecCCCCCh
Q 013423 100 CRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTA-DGIALLSSLQNLSVLDLGGLPVTD 178 (443)
Q Consensus 100 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~ 178 (443)
|. ++...+..++++++|++|++++| .++...+..++.+++|++|++++|.+.. ..|..++++++|++|++++|.+.+
T Consensus 90 n~-l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 90 NP-IQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CC-CCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred Cc-ccccChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 87 66655677788888888888887 5554434457788888888888888775 336678888888888888887665
Q ss_pred h
Q 013423 179 L 179 (443)
Q Consensus 179 ~ 179 (443)
.
T Consensus 168 ~ 168 (606)
T 3vq2_A 168 I 168 (606)
T ss_dssp E
T ss_pred c
Confidence 4
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.9e-33 Score=285.11 Aligned_cols=347 Identities=14% Similarity=0.115 Sum_probs=277.9
Q ss_pred chhhHhhhCCCccEEEecCCCCCCHH-----------------HHHHhc--CCCCCcEEeecCCCCCChHHHHhccCCCC
Q 013423 56 FPSLLEVFKHNAEAIELRGENSVDAE-----------------WMAYLG--AFRYLRSLNVADCRRVTSSALWALTGMTC 116 (443)
Q Consensus 56 ~~~~~~~~~~~L~~L~L~~~~~~~~~-----------------~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 116 (443)
+|..+..++ +|++|+|++|. +.+. +|..++ ++++|++|++++|. +....+..++++++
T Consensus 198 ip~~l~~l~-~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 198 VSKAVMRLT-KLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLKALPE 274 (636)
T ss_dssp ECGGGGGCT-TCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TCSSCCTTTTTCSS
T ss_pred CCHHHhccc-CCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-CCccChHHHhcCCC
Confidence 566566554 79999999996 5553 788888 99999999999998 55556778999999
Q ss_pred CcEEecCCCCCCCH-HHHHHhhCC------CCCcEEEcccccCCHHHHH--HhcCCCCCCEEEecCCCCChhhHHhccCC
Q 013423 117 LKELDLSRCVKVTD-AGMKHLLSI------STLEKLWLSETGLTADGIA--LLSSLQNLSVLDLGGLPVTDLVLRSLQVL 187 (443)
Q Consensus 117 L~~L~l~~~~~l~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 187 (443)
|++|++++|..+++ ..+..++.+ ++|++|++++|.++ ..|. .++.+++|++|++++|.+.+..+ .+..+
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 99999999943887 667777765 99999999999999 4566 89999999999999999985556 88899
Q ss_pred CCccEEEecCCCCCchhhHhhcCCCC-CCEEEcCCCCCCCCCC------CCCCCEEecccccccCCchhhhhhHHHhc--
Q 013423 188 TKLEYLDLWGSQVSNRGAAVLKMFPR-LSFLNLAWTGVTKLPN------ISSLECLNLSFIQQVGAETDLVLSLTALQ-- 258 (443)
Q Consensus 188 ~~L~~L~l~~~~l~~~~~~~l~~l~~-L~~L~l~~~~l~~l~~------~~~L~~L~l~~~~~~~~~~~~~~~l~~~~-- 258 (443)
++|++|++++|.+. .+|..+..+++ |+.|++++|.++.++. +++|+.|++++|.+.+. +| ..+.
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~----~p--~~l~~~ 425 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV----DG--KNFDPL 425 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTT----TT--CSSCTT
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCc----ch--hhhccc
Confidence 99999999999987 77888999999 9999999999987653 34899999999998764 33 3344
Q ss_pred -----cCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCC-------CCCCEEEecCcccCchhh
Q 013423 259 -----NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL-------SKLTNLSIRDAVLTNSGL 326 (443)
Q Consensus 259 -----~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l-------~~L~~L~l~~n~i~~~~~ 326 (443)
.+++|+.|++++|.+++..+..+..+++|+.|++++|+++...+..+... ++|++|++++|+++.. +
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p 504 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-S 504 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-C
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-C
Confidence 66799999999999996444456679999999999999984433333333 3999999999999965 5
Q ss_pred hhcC--CCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCCCCCCchhhhhhh------hhhcCC
Q 013423 327 GSFK--PPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQD 398 (443)
Q Consensus 327 ~~l~--~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~~~~l~~L------~n~l~~ 398 (443)
..+. .+++|++|++++|+ ++. ++.....++.++.. .+..-..+.+|.+.+.+|.++..++.| +|.+ +
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~~~l~~L~~L-~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~ 579 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNS-FSK--FPTQPLNSSTLKGF-GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-R 579 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCSSCCEE-ECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred hhhhhccCCCcCEEECCCCC-CCC--cChhhhcCCCCCEE-ECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-C
Confidence 5565 88999999999999 443 22233456777765 433323345788899999999988877 7777 7
Q ss_pred CCCCChhhHHhhhhhcHHHHHHhhcccccc
Q 013423 399 PMPMSHSFLDQRLKYSREELLELQYSSLSL 428 (443)
Q Consensus 399 ~~p~~~~~ld~~~~l~~L~~L~l~~n~~~~ 428 (443)
.+|..+ .++|+.||+++|++..
T Consensus 580 ~ip~~~--------~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 580 KVNEKI--------TPNISVLDIKDNPNIS 601 (636)
T ss_dssp BCCSCC--------CTTCCEEECCSCTTCE
T ss_pred ccCHhH--------hCcCCEEECcCCCCcc
Confidence 789883 2899999999998876
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.1e-33 Score=283.58 Aligned_cols=164 Identities=18% Similarity=0.135 Sum_probs=110.9
Q ss_pred HHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHH-HHhcCCCCCCEEEecCcccCchhhhhcCCCC
Q 013423 255 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPR 333 (443)
Q Consensus 255 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~ 333 (443)
..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..++
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred ccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence 3455566666666666666653333 6667777777777777655433 3566777888888888877777666777777
Q ss_pred CCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCCCCCCchhhhhhh------hhhcCCCCCCChhhH
Q 013423 334 SLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFL 407 (443)
Q Consensus 334 ~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~~~~l~~L------~n~l~~~~p~~~~~l 407 (443)
+|++|++++|. +++..+......++.++.. . +.+|.+.+..|.+|..+++| +|.+.+..|..
T Consensus 446 ~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L-~------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---- 513 (570)
T 2z63_A 446 SLEVLKMAGNS-FQENFLPDIFTELRNLTFL-D------LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI---- 513 (570)
T ss_dssp TCCEEECTTCE-EGGGEECSCCTTCTTCCEE-E------CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT----
T ss_pred cCcEEECcCCc-CccccchhhhhcccCCCEE-E------CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHH----
Confidence 88888888887 3321122222344545443 1 45788888778888887776 67777765555
Q ss_pred HhhhhhcHHHHHHhhcccccccCCCC
Q 013423 408 DQRLKYSREELLELQYSSLSLARPDD 433 (443)
Q Consensus 408 d~~~~l~~L~~L~l~~n~~~~~~p~~ 433 (443)
+.++++|+.|++++|++++..|..
T Consensus 514 --~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 514 --FDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp --TTTCTTCCEEECCSSCBCCCTTTT
T ss_pred --hhcccCCcEEEecCCcccCCCcch
Confidence 668899999999999999987754
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=3.4e-32 Score=268.73 Aligned_cols=273 Identities=17% Similarity=0.214 Sum_probs=230.1
Q ss_pred CCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCc
Q 013423 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (443)
Q Consensus 64 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~ 143 (443)
+.+++.|+|++|. +....+..+..+++|++|++++|. ++...+..+.++++|++|++++| .++......|..+++|+
T Consensus 31 ~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 31 PTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp CTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCC
T ss_pred CCCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCC
Confidence 3479999999986 444445678889999999999997 77766778889999999999998 67765455678899999
Q ss_pred EEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCC
Q 013423 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223 (443)
Q Consensus 144 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 223 (443)
+|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 99999999988777788899999999999999988777788999999999999999987777789999999999999998
Q ss_pred CCC-----CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCC
Q 013423 224 VTK-----LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 298 (443)
Q Consensus 224 l~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~ 298 (443)
+.. +..+++|+.|++++|...+. ++ .......+|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDT----MT--PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCE----EC--TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred CcEeChhhcccCcccceeeCCCCccccc----cC--cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 775 56788999999999876653 34 33334458999999999988766667888999999999999988
Q ss_pred hHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCC
Q 013423 299 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 345 (443)
Q Consensus 299 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~ 345 (443)
+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence 77777788899999999999999988888888889999999999974
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.5e-32 Score=270.13 Aligned_cols=338 Identities=15% Similarity=0.164 Sum_probs=229.9
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
+++++|++++|. +....+..+..+++|++|++++|. ++...+..++++++|++|++++| .++.. +.. .+++|++
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN-KLVKI-SCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSS-CCCEE-ECC--CCCCCSE
T ss_pred ccccEEECCCCc-ccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCC-ceeec-Ccc--ccCCccE
Confidence 468888888875 344344567778888888888887 66655667778888888888887 56542 111 6778888
Q ss_pred EEcccccCCHH-HHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCc--cEEEecCCCC--CchhhHhhcC---------
Q 013423 145 LWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKL--EYLDLWGSQV--SNRGAAVLKM--------- 210 (443)
Q Consensus 145 L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~l--~~~~~~~l~~--------- 210 (443)
|++++|.+... .|..++.+++|++|++++|.+.+. .+..+++| ++|++++|.+ .+..|..+..
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 88888877763 356777788888888888777663 34455555 7777777666 3333333332
Q ss_pred -----------------------------------------------CC---------------------------CCCE
Q 013423 211 -----------------------------------------------FP---------------------------RLSF 216 (443)
Q Consensus 211 -----------------------------------------------l~---------------------------~L~~ 216 (443)
++ +|+.
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 11 3444
Q ss_pred EEcCCCCCCC-----C-----CCCCCCCEEecccccccCCchhhhhhH-------------------HHhccCCCCCEEE
Q 013423 217 LNLAWTGVTK-----L-----PNISSLECLNLSFIQQVGAETDLVLSL-------------------TALQNLNHLERLN 267 (443)
Q Consensus 217 L~l~~~~l~~-----l-----~~~~~L~~L~l~~~~~~~~~~~~~~~l-------------------~~~~~~~~L~~L~ 267 (443)
|++++|.+.+ + ..+++|+.+++++|.+ ......+..+ .....+++|++|+
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 330 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence 4444443331 1 3333444444444333 1000001000 0016788999999
Q ss_pred cCCCCCCchhhhcccCCCCCCEEEeeCCCCCh--HHHHHhcCCCCCCEEEecCcccCc-hhhhhcCCCCCCCEEeccCCC
Q 013423 268 LEQTQVSDATLFPLSTFKELIHLSLRNASLTD--VSLHQLSSLSKLTNLSIRDAVLTN-SGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 268 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~l~~~~~L~~L~l~~n~ 344 (443)
+++|.+++..|..+..+++|+.|++++|++++ ..|..+..+++|++|++++|.+++ .....+..+++|++|++++|+
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 99999999888889999999999999999986 566789999999999999999998 544457788999999999999
Q ss_pred CCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCCCCCCchhhhhhh------hhhcCCCCCCChhhHHhhhhhcHHHH
Q 013423 345 LLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREEL 418 (443)
Q Consensus 345 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~~~~l~~L------~n~l~~~~p~~~~~ld~~~~l~~L~~ 418 (443)
+++..+..+. +.++.. . +.+|.+. .+|.++..++.| +|.+. .+|... +..+++|+.
T Consensus 411 -l~~~~~~~l~---~~L~~L-~------Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~-----~~~l~~L~~ 472 (520)
T 2z7x_B 411 -LTDTIFRCLP---PRIKVL-D------LHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGI-----FDRLTSLQK 472 (520)
T ss_dssp -CCGGGGGSCC---TTCCEE-E------CCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTT-----TTTCTTCCE
T ss_pred -CCcchhhhhc---ccCCEE-E------CCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHH-----hccCCcccE
Confidence 5533332221 344443 1 4578887 688888787777 77777 467663 668999999
Q ss_pred HHhhcccccccC
Q 013423 419 LELQYSSLSLAR 430 (443)
Q Consensus 419 L~l~~n~~~~~~ 430 (443)
|++++|++++..
T Consensus 473 L~l~~N~~~c~c 484 (520)
T 2z7x_B 473 IWLHTNPWDCSC 484 (520)
T ss_dssp EECCSSCBCCCH
T ss_pred EECcCCCCcccC
Confidence 999999999853
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=4.1e-32 Score=281.75 Aligned_cols=324 Identities=13% Similarity=0.100 Sum_probs=144.5
Q ss_pred HHHHhc--CCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCH-HHHHHhhCC-------CCCcEEEccccc
Q 013423 82 WMAYLG--AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTD-AGMKHLLSI-------STLEKLWLSETG 151 (443)
Q Consensus 82 ~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~-~~~~~~~~l-------~~L~~L~l~~~~ 151 (443)
+|..++ ++++|++|++++|. +....+..+.++++|++|++++|..+++ ..+..++.+ ++|++|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~-l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCP-NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCT-TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCC-CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 444443 55555555555554 2222334455555555555555521443 333333322 255555555555
Q ss_pred CCHHHHH--HhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCC-CCEEEcCCCCCCCCC
Q 013423 152 LTADGIA--LLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPR-LSFLNLAWTGVTKLP 228 (443)
Q Consensus 152 ~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~-L~~L~l~~~~l~~l~ 228 (443)
+. ..|. .+.++++|+.|++++|.+.. .+ .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.+..++
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVRH-LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCCB-CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCccc-ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCc
Confidence 55 2233 45555555555555555542 22 4455555555555555554 44444555555 555555555554433
Q ss_pred C----C--CCCCEEecccccccCCchhhhhhH-HHhc--cCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCCh
Q 013423 229 N----I--SSLECLNLSFIQQVGAETDLVLSL-TALQ--NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 299 (443)
Q Consensus 229 ~----~--~~L~~L~l~~~~~~~~~~~~~~~l-~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~ 299 (443)
. + ++|+.|++++|.+.+. +|.+ ..+. .+++|+.|++++|.++......+..+++|+.|++++|.++.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~----ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ 711 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSE----GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTT----SSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC
T ss_pred hhhhccccCCCCEEECcCCcCCCc----cccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc
Confidence 1 1 2255555555554431 1100 0011 22345555555555553222222345555555555555542
Q ss_pred HHHHHhcC-------CCCCCEEEecCcccCchhhhhcC--CCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeeccc
Q 013423 300 VSLHQLSS-------LSKLTNLSIRDAVLTNSGLGSFK--PPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVI 370 (443)
Q Consensus 300 ~~~~~l~~-------l~~L~~L~l~~n~i~~~~~~~l~--~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~ 370 (443)
.....+.. +++|+.|++++|+++.. +..+. .+++|+.|++++|+ ++. ++.....++.++.. .+...
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L-~Ls~N 786 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLKAF-GIRHQ 786 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCCEE-ECCCC
T ss_pred cChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCCEE-ECCCC
Confidence 21111111 12555555555555533 33333 45555555555555 221 11112234444433 22211
Q ss_pred CCCCCCCCCCCCCCchhhhhhh------hhhcCCCCCCChhhHHhhhhhcHHHHHHhhcccccc
Q 013423 371 CPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL 428 (443)
Q Consensus 371 ~~~~~~~l~~~~p~~~~~l~~L------~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~n~~~~ 428 (443)
..+.+|.+.+.+|.+|..++.| +|.+ +.+|..+ .++|+.||+++|++..
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l--------~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--------TPQLYILDIADNPNIS 841 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC--------CSSSCEEECCSCTTCE
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh--------cCCCCEEECCCCCCCc
Confidence 1223345555555555554444 4444 4455552 1455555555555443
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.1e-31 Score=278.48 Aligned_cols=322 Identities=14% Similarity=0.142 Sum_probs=253.2
Q ss_pred HHhcCCCCCcEEeecCCCCCCh-----------------HHHHhcc--CCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 84 AYLGAFRYLRSLNVADCRRVTS-----------------SALWALT--GMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 84 ~~~~~~~~L~~L~L~~~~~~~~-----------------~~~~~l~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
..++++++|++|+|++|. ++. ..+..++ ++++|++|++++| .+.+..+..|..+++|++
T Consensus 442 ~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-PNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp GGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-TTCCSCCGGGGGCSSCCE
T ss_pred HHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-CCCccChHHHhCCCCCCE
Confidence 458889999999999998 766 2566666 8999999999998 555555778899999999
Q ss_pred EEccccc-CCH-HHHHHhcC-------CCCCCEEEecCCCCChhhHH--hccCCCCccEEEecCCCCCchhhHhhcCCCC
Q 013423 145 LWLSETG-LTA-DGIALLSS-------LQNLSVLDLGGLPVTDLVLR--SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPR 213 (443)
Q Consensus 145 L~l~~~~-~~~-~~~~~l~~-------l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 213 (443)
|++++|+ +++ ..|..+.. +++|+.|++++|.+.. .|. .+..+++|++|++++|.+. .+| .+..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999998 887 66765554 4599999999999984 466 7899999999999999998 677 8889999
Q ss_pred CCEEEcCCCCCCCCC----CCCC-CCEEecccccccCCchhhhhhHHHhccCC--CCCEEEcCCCCCCchhhhc---cc-
Q 013423 214 LSFLNLAWTGVTKLP----NISS-LECLNLSFIQQVGAETDLVLSLTALQNLN--HLERLNLEQTQVSDATLFP---LS- 282 (443)
Q Consensus 214 L~~L~l~~~~l~~l~----~~~~-L~~L~l~~~~~~~~~~~~~~~l~~~~~~~--~L~~L~l~~~~l~~~~~~~---l~- 282 (443)
|+.|++++|.+..++ .+++ |+.|++++|.+.. +| ..+...+ +|+.|++++|.+.+..|.. +.
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-----lp--~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-----IP--NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-----CC--SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCCCCc-----Cc--hhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 999999999988654 5677 9999999998763 55 4444444 4999999999998755432 22
Q ss_pred -CCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCC-------CCCCEEeccCCCCCCHHHHHHH
Q 013423 283 -TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-------RSLKLLDLHGGWLLTEDAILQF 354 (443)
Q Consensus 283 -~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~-------~~L~~L~l~~n~~l~~~~~~~~ 354 (443)
.+++|+.|++++|.++......+..+++|+.|++++|+++......+... ++|+.|++++|+ ++ ..+..+
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~-~lp~~l 747 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LT-SLSDDF 747 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CC-CCCGGG
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-Cc-cchHHh
Confidence 34589999999999986555566689999999999999996644433322 389999999998 44 222222
Q ss_pred H-HhCCCceeeeeecccCCCCCCCCCCCCCCchhhhhhh------h------hhcCCCCCCChhhHHhhhhhcHHHHHHh
Q 013423 355 C-KMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------V------KQKQDPMPMSHSFLDQRLKYSREELLEL 421 (443)
Q Consensus 355 ~-~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~~~~l~~L------~------n~l~~~~p~~~~~ld~~~~l~~L~~L~l 421 (443)
. ..++.++.. . +.+|.+.+ +|..+..++.| + |.+.+.+|.. +.++++|+.|++
T Consensus 748 ~~~~l~~L~~L-~------Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~------l~~L~~L~~L~L 813 (876)
T 4ecn_A 748 RATTLPYLSNM-D------VSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG------ITTCPSLIQLQI 813 (876)
T ss_dssp STTTCTTCCEE-E------CCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT------GGGCSSCCEEEC
T ss_pred hhccCCCcCEE-E------eCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH------HhcCCCCCEEEC
Confidence 2 255666654 2 46788887 88888888877 3 6677888988 778999999999
Q ss_pred hcccccccCCCCC
Q 013423 422 QYSSLSLARPDDS 434 (443)
Q Consensus 422 ~~n~~~~~~p~~~ 434 (443)
++|.+ +.+|...
T Consensus 814 s~N~L-~~Ip~~l 825 (876)
T 4ecn_A 814 GSNDI-RKVDEKL 825 (876)
T ss_dssp CSSCC-CBCCSCC
T ss_pred CCCCC-CccCHhh
Confidence 99999 8888753
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=6.6e-32 Score=271.44 Aligned_cols=274 Identities=20% Similarity=0.219 Sum_probs=155.7
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEE
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 145 (443)
++++|++++|. +....+..+..+++|++|++++|. ++...+..+.++++|++|++++| .+++..+..|+.+++|++|
T Consensus 27 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 27 AMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEE
T ss_pred CccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEE
Confidence 45666666653 232223345555666666666655 44444445555566666666655 4444444445555666666
Q ss_pred EcccccCCHH-HHHHhcCCCCCCEEEecCCC-CChhhHHhccCCCCccEEEecCCCCCchhhHhh---------------
Q 013423 146 WLSETGLTAD-GIALLSSLQNLSVLDLGGLP-VTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVL--------------- 208 (443)
Q Consensus 146 ~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l--------------- 208 (443)
++++|.+... .+..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..|..+
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 6665555432 12344555555555555554 232222344555555555555555444333333
Q ss_pred ---------cCCCCCCEEEcCCCCCCCCC--------CCCCCCEEecccccccCCch-----------------------
Q 013423 209 ---------KMFPRLSFLNLAWTGVTKLP--------NISSLECLNLSFIQQVGAET----------------------- 248 (443)
Q Consensus 209 ---------~~l~~L~~L~l~~~~l~~l~--------~~~~L~~L~l~~~~~~~~~~----------------------- 248 (443)
..+++|+.|++++|.+.+++ .+++|+.|++.+|.+.+...
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 34667777777777666531 23344444444332211000
Q ss_pred -----------------------------------------------------------hhhhhHHHhccCCCCCEEEcC
Q 013423 249 -----------------------------------------------------------DLVLSLTALQNLNHLERLNLE 269 (443)
Q Consensus 249 -----------------------------------------------------------~~~~~l~~~~~~~~L~~L~l~ 269 (443)
..+|. ..+..+++|++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~-~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC-SFSQHLKSLEFLDLS 342 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCH-HHHHHCTTCCEEECC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCH-HHHhcCccccEEEcc
Confidence 01231 122467888888888
Q ss_pred CCCCCchhhh---cccCCCCCCEEEeeCCCCChHHH--HHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCC
Q 013423 270 QTQVSDATLF---PLSTFKELIHLSLRNASLTDVSL--HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 270 ~~~l~~~~~~---~l~~~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 344 (443)
+|.+++..+. .++.+++|+.|++++|++++..+ ..+..+++|++|++++|++++. |..+..+++|++|++++|+
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCC
Confidence 8888876543 35677888888888888876543 4577888888888888888854 5556666778888887777
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=9.2e-32 Score=277.26 Aligned_cols=374 Identities=16% Similarity=0.154 Sum_probs=205.9
Q ss_pred ccccccccchHHHHHHHHHHHhcccc-------chhhHhhhCCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCC
Q 013423 30 QRRSLERLPAHLADSLLRHLIRRRLI-------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRR 102 (443)
Q Consensus 30 ~~~~l~~lp~~l~~~~l~~L~~~~~~-------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 102 (443)
+...+..+|..++. .++.+++. .+..+..+ ++|++|++++|. +....+..++.+++|++|++++|.
T Consensus 12 s~~~L~~ip~~~~~----~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~- 84 (680)
T 1ziw_A 12 SHLKLTQVPDDLPT----NITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNE- 84 (680)
T ss_dssp CSSCCSSCCSCSCT----TCSEEECCSSCCCCCCGGGGGGG-TTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSC-
T ss_pred CCCCccccccccCC----CCcEEECCCCCCCCcCHHHHhCC-CcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCc-
Confidence 44567777765432 22222221 22234333 356666666664 333334455566666666666665
Q ss_pred CChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHH
Q 013423 103 VTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLR 182 (443)
Q Consensus 103 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 182 (443)
++......++++++|++|++++| .++...+..|+.+++|++|++++|.+....+..+..+++|++|++++|.+++..+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred cCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 55434445666666666666666 44443334556666666666666666655555556666666666666666655444
Q ss_pred hcc--CCCCccEEEecCCCCCchhhHhhcCC---------------------------CCCCEEEcCCCCCCC-----CC
Q 013423 183 SLQ--VLTKLEYLDLWGSQVSNRGAAVLKMF---------------------------PRLSFLNLAWTGVTK-----LP 228 (443)
Q Consensus 183 ~l~--~l~~L~~L~l~~~~l~~~~~~~l~~l---------------------------~~L~~L~l~~~~l~~-----l~ 228 (443)
.+. .+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+ +.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 332 34666666666666655444444333 334445555554443 22
Q ss_pred CC--CCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChH-----H
Q 013423 229 NI--SSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV-----S 301 (443)
Q Consensus 229 ~~--~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~-----~ 301 (443)
.+ ++|+.|++++|.+.+. .+ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+. +
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~----~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVV----GN--DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEE----CT--TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred ccCcCCCCEEECCCCCcCcc----Cc--ccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence 22 2366666666655432 12 3455566666666666666665555666666666666665533211 1
Q ss_pred H----HHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHH--HHHH-hCCCceeeeeecccCCCC
Q 013423 302 L----HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAIL--QFCK-MHPRIEVWHELSVICPSD 374 (443)
Q Consensus 302 ~----~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~--~~~~-~~~~l~~~~~~~~~~~~~ 374 (443)
| ..+..+++|++|++++|.+++..+..+..+++|++|++++|.. +...+. .+.. ..+.++.. .+.
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~-~~~~l~~~~f~~~~~~~L~~L-------~L~ 389 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT-SLRTLTNETFVSLAHSPLHIL-------NLT 389 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS-CCCEECTTTTGGGTTSCCCEE-------ECT
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch-hhhhcchhhhcccccCcCceE-------ECC
Confidence 1 1455667777777777777777666677777788888777752 100000 0000 01122221 134
Q ss_pred CCCCCCCCCCchhhhhhh------hhhcCCCCCCChhhHHhhhhhcHHHHHHhhcccccccC
Q 013423 375 QIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLAR 430 (443)
Q Consensus 375 ~~~l~~~~p~~~~~l~~L------~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~n~~~~~~ 430 (443)
+|.+.+..|..|..+++| +|.+.+.+|... +..+++|+.|++++|.+++..
T Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE-----WRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGG-----GTTCTTCCEEECCSCSEEECC
T ss_pred CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccc-----ccCcccccEEecCCCCcceeC
Confidence 666776666667666665 555555555432 556677777777777765543
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2e-31 Score=280.39 Aligned_cols=272 Identities=20% Similarity=0.187 Sum_probs=163.4
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
+++++|+|++|. +....+..+..+++|++|++++|..+....+..+.++++|++|++++| .+....+..|..+++|++
T Consensus 24 ~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 24 NTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp TTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCC
T ss_pred CCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCE
Confidence 367777777664 333334456666777777777664344433455666677777777766 555544555666667777
Q ss_pred EEcccccCCHHHHH--HhcCCCCCCEEEecCCCCChhhH-HhccCCCCccEEEecCCCCCchhhHhhcCC--CCCCEEEc
Q 013423 145 LWLSETGLTADGIA--LLSSLQNLSVLDLGGLPVTDLVL-RSLQVLTKLEYLDLWGSQVSNRGAAVLKMF--PRLSFLNL 219 (443)
Q Consensus 145 L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l--~~L~~L~l 219 (443)
|++++|.+.+..+. .+..+++|++|++++|.+.+..+ ..++.+++|++|++++|.+.+..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 77777666653333 25666677777777666655432 345666667777766666655444444333 44444444
Q ss_pred CCCCCCC-----CCCC----------------------------------------------------------------
Q 013423 220 AWTGVTK-----LPNI---------------------------------------------------------------- 230 (443)
Q Consensus 220 ~~~~l~~-----l~~~---------------------------------------------------------------- 230 (443)
++|.+.. +..+
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 4443332 1111
Q ss_pred ----CCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhc
Q 013423 231 ----SSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 306 (443)
Q Consensus 231 ----~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~ 306 (443)
++|+.|++++|.+.+. .+ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~----~~--~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSL----NS--RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEE----CS--CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ccccCCccEEECCCCccccc----Ch--hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 3445555555443321 12 3355666777777777777766666667777777777777777665566667
Q ss_pred CCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCC
Q 013423 307 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 307 ~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 344 (443)
.+++|+.|++++|.+++..+..+..+++|++|++++|.
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 77777777777777776666666667777777777776
No 17
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.7e-31 Score=259.42 Aligned_cols=287 Identities=20% Similarity=0.231 Sum_probs=153.3
Q ss_pred CccEEEecCCCCCCH---HHHHHhcCCCCCcEEeecCCCCCChHHHHhcc-CCC----CCcEEecCCCCCCCH----HHH
Q 013423 66 NAEAIELRGENSVDA---EWMAYLGAFRYLRSLNVADCRRVTSSALWALT-GMT----CLKELDLSRCVKVTD----AGM 133 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~---~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~-~~~----~L~~L~l~~~~~l~~----~~~ 133 (443)
++++|++++|..... .++..+..+++|++|++++|. +++.....+. .++ +|++|++++| .+++ ..+
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~ 106 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLS 106 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHHH
Confidence 566666666642211 334455556666666666665 5544443333 233 4666666666 4553 224
Q ss_pred HHhhCCCCCcEEEcccccCCHHHHHHhc-----CCCCCCEEEecCCCCChhh----HHhccCCCCccEEEecCCCCCchh
Q 013423 134 KHLLSISTLEKLWLSETGLTADGIALLS-----SLQNLSVLDLGGLPVTDLV----LRSLQVLTKLEYLDLWGSQVSNRG 204 (443)
Q Consensus 134 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~l~~~~ 204 (443)
..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++.. +..+..+++|++|++++|.+.+..
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 4455666666666666666554443222 2445666666666665532 334445566666666666655443
Q ss_pred hHhhc-----CCCCCCEEEcCCCCCCC---------CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCC
Q 013423 205 AAVLK-----MFPRLSFLNLAWTGVTK---------LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQ 270 (443)
Q Consensus 205 ~~~l~-----~l~~L~~L~l~~~~l~~---------l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 270 (443)
+..+. ..++|+.|++++|.++. +..+++|+.|++++|.+.+.....+.. ..+..+++|++|++++
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP-GLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH-HHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH-HHhcCCCCceEEECcC
Confidence 33332 24466666666666654 124566666666666554322222220 1122456666666666
Q ss_pred CCCCch----hhhcccCCCCCCEEEeeCCCCChHHHHHhcC-----CCCCCEEEecCcccCchhh----hhcCCCCCCCE
Q 013423 271 TQVSDA----TLFPLSTFKELIHLSLRNASLTDVSLHQLSS-----LSKLTNLSIRDAVLTNSGL----GSFKPPRSLKL 337 (443)
Q Consensus 271 ~~l~~~----~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~-----l~~L~~L~l~~n~i~~~~~----~~l~~~~~L~~ 337 (443)
|.+++. .+..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++... ..+..+++|++
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 666654 2333445666666666666665544433322 2466666666666665532 23334566666
Q ss_pred EeccCCCCCCHHHHHHHHH
Q 013423 338 LDLHGGWLLTEDAILQFCK 356 (443)
Q Consensus 338 L~l~~n~~l~~~~~~~~~~ 356 (443)
|++++|+ +++..+..+..
T Consensus 346 L~Ls~n~-i~~~~~~~l~~ 363 (461)
T 1z7x_W 346 LQISNNR-LEDAGVRELCQ 363 (461)
T ss_dssp EECCSSB-CHHHHHHHHHH
T ss_pred EEccCCc-cccccHHHHHH
Confidence 6666665 55555555444
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.7e-30 Score=253.53 Aligned_cols=331 Identities=18% Similarity=0.171 Sum_probs=232.2
Q ss_pred ccccccccchHHHHHHHHHHHhcccc-------chhhHhhhCCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCC
Q 013423 30 QRRSLERLPAHLADSLLRHLIRRRLI-------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRR 102 (443)
Q Consensus 30 ~~~~l~~lp~~l~~~~l~~L~~~~~~-------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 102 (443)
....+..+|. ++ +.++.+++. .|..+..+ ++|++|++++|.......+..+..+++|++|++++|.
T Consensus 18 ~~~~l~~lp~-l~----~~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~- 90 (455)
T 3v47_A 18 INRGLHQVPE-LP----AHVNYVDLSLNSIAELNETSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ- 90 (455)
T ss_dssp CSSCCSSCCC-CC----TTCCEEECCSSCCCEECTTTTSSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-
T ss_pred CCCCcccCCC-CC----CccCEEEecCCccCcCChhHhccC-ccccEEECcCCcccceECcccccccccCCEEeCCCCc-
Confidence 4456666766 22 233333332 34445544 4799999999854222224567889999999999998
Q ss_pred CChHHHHhccCCCCCcEEecCCCCCCCHHHHHH--hhCCCCCcEEEcccccCCHHHHHH-hcCCCCCCEEEecCCCCChh
Q 013423 103 VTSSALWALTGMTCLKELDLSRCVKVTDAGMKH--LLSISTLEKLWLSETGLTADGIAL-LSSLQNLSVLDLGGLPVTDL 179 (443)
Q Consensus 103 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~ 179 (443)
++...+..+.++++|++|++++| .+++..+.. +..+++|++|++++|.+....+.. +..+++|++|++++|.+.+.
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred cCccChhhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 77766778889999999999998 677644544 788999999999999998875654 78899999999999988765
Q ss_pred hHHhccC----------------------------------CCCccEEEecCCCCCchhhHhhcCC---CCCCEEEcCCC
Q 013423 180 VLRSLQV----------------------------------LTKLEYLDLWGSQVSNRGAAVLKMF---PRLSFLNLAWT 222 (443)
Q Consensus 180 ~~~~l~~----------------------------------l~~L~~L~l~~~~l~~~~~~~l~~l---~~L~~L~l~~~ 222 (443)
.+..+.. +++|++|++++|.+.+..+..+... ++|+.+++++|
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 5544433 3567778888777776666655432 56666666665
Q ss_pred CCCC---------------CC--CCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCC
Q 013423 223 GVTK---------------LP--NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 285 (443)
Q Consensus 223 ~l~~---------------l~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 285 (443)
.... +. ..++|+.|++++|.+.+. .| ..+..+++|++|++++|.+.+..+..+..++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 323 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL----LK--SVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE----CT--TTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCcccccc----ch--hhcccCCCCCEEECCCCcccccChhHhcCcc
Confidence 4322 00 125788888888776642 33 4567778888888888888877677777888
Q ss_pred CCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeee
Q 013423 286 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWH 365 (443)
Q Consensus 286 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~ 365 (443)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++ +. .+......++.++..
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~-~~~~~~~~l~~L~~L- 400 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KS-VPDGIFDRLTSLQKI- 400 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SC-CCTTTTTTCTTCCEE-
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc-cc-CCHhHhccCCcccEE-
Confidence 888888888888777677777888888888888888877777777788888888888874 31 222223444555543
Q ss_pred eecccCCCCCCCCCCCCC
Q 013423 366 ELSVICPSDQIGSNGPSP 383 (443)
Q Consensus 366 ~~~~~~~~~~~~l~~~~p 383 (443)
. +.+|.+.+.+|
T Consensus 401 ~------l~~N~l~~~~~ 412 (455)
T 3v47_A 401 W------LHTNPWDCSCP 412 (455)
T ss_dssp E------CCSSCBCCCTT
T ss_pred E------ccCCCcccCCC
Confidence 1 45777777666
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.3e-32 Score=279.77 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=91.5
Q ss_pred HHHHhhccccccccch-HHHHHHHHHHHhcccc-------chhhHhhhCCCccEEEecCCCCCCHHHHHHhcCCCCCcEE
Q 013423 24 VQKWRRQRRSLERLPA-HLADSLLRHLIRRRLI-------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSL 95 (443)
Q Consensus 24 ~~~~~~~~~~l~~lp~-~l~~~~l~~L~~~~~~-------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 95 (443)
++.+.++.+.+..+++ .+.. +..|+.+++. .|..+..+ ++|++|++++|. +....+..++.+++|++|
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~i~~~~~~~l-~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSN--FSELQWLDLSRCEIETIEDKAWHGL-HHLSNLILTGNP-IQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTT--CTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCC-CCCCCTTSSTTCTTCCEE
T ss_pred cCEEECCCCCcCEeChhhccC--CccCcEEeCCCCcccccCHHHhhch-hhcCEeECCCCc-ccccChhhcCCcccCCEE
Confidence 4556667777777776 3333 5566655543 34445443 479999999885 444445678889999999
Q ss_pred eecCCCCCChHHHHhccCCCCCcEEecCCCCCCCH-HHHHHhhCCCCCcEEEcccccCCHHHHH
Q 013423 96 NVADCRRVTSSALWALTGMTCLKELDLSRCVKVTD-AGMKHLLSISTLEKLWLSETGLTADGIA 158 (443)
Q Consensus 96 ~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 158 (443)
++++|. +.......++++++|++|++++| .++. ..+..++++++|++|++++|.+....+.
T Consensus 110 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 110 VAVETK-LASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp ECTTSC-CCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred EccCCc-cccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 999987 66545456888999999999998 5553 2356788899999999999887765443
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.5e-31 Score=267.68 Aligned_cols=341 Identities=18% Similarity=0.160 Sum_probs=230.9
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
+++++|++++|. +....+..++.+++|++|++++|. ++...+..+.++++|++|++++| .++.. +.. .+++|++
T Consensus 52 ~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHN-RLQNI-SCC--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTS-CCCEE-CSC--CCTTCSE
T ss_pred CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCC-cCCcc-Ccc--ccccCCE
Confidence 478999999885 343334577888999999999987 77766777888899999999988 56643 222 7888999
Q ss_pred EEcccccCCHHH-HHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCC--CchhhHhhcC-----------
Q 013423 145 LWLSETGLTADG-IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV--SNRGAAVLKM----------- 210 (443)
Q Consensus 145 L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l--~~~~~~~l~~----------- 210 (443)
|++++|.+.... |..++++++|++|++++|.+.......+..+ +|++|++++|.+ .+..+..+..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 999998887743 4678888899999999888876433333333 338888888766 4333333322
Q ss_pred ---------------CCCCCEEEcCCCC----------------------------CCC--------CCCCCCCCEEecc
Q 013423 211 ---------------FPRLSFLNLAWTG----------------------------VTK--------LPNISSLECLNLS 239 (443)
Q Consensus 211 ---------------l~~L~~L~l~~~~----------------------------l~~--------l~~~~~L~~L~l~ 239 (443)
+++|+.+++++|. +.. ....++|+.|+++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 1223333333221 000 0001133333333
Q ss_pred cccccCCchh-----------------------hhh--hHHH----------------------hccCCCCCEEEcCCCC
Q 013423 240 FIQQVGAETD-----------------------LVL--SLTA----------------------LQNLNHLERLNLEQTQ 272 (443)
Q Consensus 240 ~~~~~~~~~~-----------------------~~~--~l~~----------------------~~~~~~L~~L~l~~~~ 272 (443)
+|.+.+.-.. .+| .+.. ...+++|++|++++|.
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc
Confidence 3332211000 001 0001 1677899999999999
Q ss_pred CCchhhhcccCCCCCCEEEeeCCCCCh--HHHHHhcCCCCCCEEEecCcccCc-hhhhhcCCCCCCCEEeccCCCCCCHH
Q 013423 273 VSDATLFPLSTFKELIHLSLRNASLTD--VSLHQLSSLSKLTNLSIRDAVLTN-SGLGSFKPPRSLKLLDLHGGWLLTED 349 (443)
Q Consensus 273 l~~~~~~~l~~~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~l~~~~~L~~L~l~~n~~l~~~ 349 (443)
+++..+..+..+++|+.|++++|++++ ..|..+..+++|++|++++|++++ .....+..+++|++|++++|+ +++.
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~ 443 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGS 443 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGG
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC-CCcc
Confidence 999888889999999999999999986 456778999999999999999998 444457778999999999999 5533
Q ss_pred HHHHHHHhCCCceeeeeecccCCCCCCCCCCCCCCchhhhhhh------hhhcCCCCCCChhhHHhhhhhcHHHHHHhhc
Q 013423 350 AILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQY 423 (443)
Q Consensus 350 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~~~~l~~L------~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~ 423 (443)
.+..+. +.++.. . +.+|.+. .+|.++..++.| +|.++ .+|... +..+++|+.|++++
T Consensus 444 ~~~~l~---~~L~~L-~------L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~-----~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 444 VFRCLP---PKVKVL-D------LHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV-----FDRLTSLQYIWLHD 506 (562)
T ss_dssp GGSSCC---TTCSEE-E------CCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTS-----TTTCTTCCCEECCS
T ss_pred hhhhhc---CcCCEE-E------CCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHH-----HhcCCCCCEEEecC
Confidence 222211 344433 1 4577777 588777677766 77777 466653 66899999999999
Q ss_pred ccccccC
Q 013423 424 SSLSLAR 430 (443)
Q Consensus 424 n~~~~~~ 430 (443)
|++.+..
T Consensus 507 N~~~c~c 513 (562)
T 3a79_B 507 NPWDCTC 513 (562)
T ss_dssp CCBCCCH
T ss_pred CCcCCCc
Confidence 9998854
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=2.2e-31 Score=274.40 Aligned_cols=392 Identities=18% Similarity=0.165 Sum_probs=253.7
Q ss_pred HHHHhhccccccccchH-HHHHHHHHHHhcccc-------chhhHhhhCCCccEEEecCCCCCCHHHHHHhcCCCCCcEE
Q 013423 24 VQKWRRQRRSLERLPAH-LADSLLRHLIRRRLI-------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSL 95 (443)
Q Consensus 24 ~~~~~~~~~~l~~lp~~-l~~~~l~~L~~~~~~-------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 95 (443)
++.+.++.+.+..+|+. +.. +..|+.+++. .|..+..+ ++|++|++++|.. ...-+..++.+++|++|
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTR--YSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNEL-SQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGG--GTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSSCC-CCCCTTTTTTCTTCSEE
T ss_pred CcEEECCCCCCCCcCHHHHhC--CCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCCcc-CccChhhhccCCCCCEE
Confidence 45667778888888875 444 6666666553 45566655 4899999999863 32222358899999999
Q ss_pred eecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhc--CCCCCCEEEecC
Q 013423 96 NVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS--SLQNLSVLDLGG 173 (443)
Q Consensus 96 ~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~ 173 (443)
++++|. ++...+..++++++|++|++++| .++...+..+..+++|++|++++|.++...+..+. .+++|++|++++
T Consensus 103 ~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 103 HLMSNS-IQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp ECCSSC-CCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred ECCCCc-cCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 999998 77656667889999999999998 66655555678899999999999999887666554 568999999999
Q ss_pred CCCChhhHHhccCC---------------------------CCccEEEecCCCCCchhhHhhcCCC--CCCEEEcCCCCC
Q 013423 174 LPVTDLVLRSLQVL---------------------------TKLEYLDLWGSQVSNRGAAVLKMFP--RLSFLNLAWTGV 224 (443)
Q Consensus 174 ~~~~~~~~~~l~~l---------------------------~~L~~L~l~~~~l~~~~~~~l~~l~--~L~~L~l~~~~l 224 (443)
|.+.+..+..+..+ ++|++|++++|.+.+..+..+..++ +|+.|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 98877655544433 5678888888888877777887765 499999999988
Q ss_pred CC-----CCCCCCCCEEecccccccCCchh-------------------------hhhhH--HHhccCCCCCEEEcCCCC
Q 013423 225 TK-----LPNISSLECLNLSFIQQVGAETD-------------------------LVLSL--TALQNLNHLERLNLEQTQ 272 (443)
Q Consensus 225 ~~-----l~~~~~L~~L~l~~~~~~~~~~~-------------------------~~~~l--~~~~~~~~L~~L~l~~~~ 272 (443)
.. +..+++|+.|++++|.+.+.... .+|.+ ..+..+++|++|++++|.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 75 66789999999999987643110 11100 034556677777777777
Q ss_pred CCchhhhcccCCCCCCEEEeeCCCCCh--HHHHHhc--CCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCH
Q 013423 273 VSDATLFPLSTFKELIHLSLRNASLTD--VSLHQLS--SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE 348 (443)
Q Consensus 273 l~~~~~~~l~~~~~L~~L~l~~n~i~~--~~~~~l~--~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~ 348 (443)
+.+..+..+..+++|++|++++|.++. .....+. ..++|+.|++++|++++..+..+..+++|++|++++|+. ++
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~ 419 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI-GQ 419 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-EE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC-cc
Confidence 776656566666666666666554211 0111111 113444445555555555445555555566666665552 21
Q ss_pred HHHHHHHHhCCCceeeee------------------ecccCCCCCCCCC--CCCCCchhhhhhh------hhhcCCCCCC
Q 013423 349 DAILQFCKMHPRIEVWHE------------------LSVICPSDQIGSN--GPSPSRTSLRASL------VKQKQDPMPM 402 (443)
Q Consensus 349 ~~~~~~~~~~~~l~~~~~------------------~~~~~~~~~~~l~--~~~p~~~~~l~~L------~n~l~~~~p~ 402 (443)
.........++.++..+- +..+ .+.+|.+. +.+|..|..++.| +|.+.+..|.
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL-MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE-ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc-hhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 111111122232222200 0000 01233333 4567777776666 6666654444
Q ss_pred ChhhHHhhhhhcHHHHHHhhccccccc
Q 013423 403 SHSFLDQRLKYSREELLELQYSSLSLA 429 (443)
Q Consensus 403 ~~~~ld~~~~l~~L~~L~l~~n~~~~~ 429 (443)
. +..+++|+.|++++|.+++.
T Consensus 499 ~------~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 499 M------LEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp T------TTTCTTCCEEECCSSCCGGG
T ss_pred h------hccccccCEEeCCCCCcccc
Confidence 3 66788888888888888763
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=2.5e-30 Score=248.57 Aligned_cols=263 Identities=19% Similarity=0.230 Sum_probs=224.1
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
.+++.|+++++. +..--...+..+++|++|++++|. ++......+.++++|++|++++| .++...+..+..+++|++
T Consensus 45 ~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp CCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEecCCc-hhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 479999999985 322222446789999999999998 77766678899999999999998 677665667889999999
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCC
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 224 (443)
|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++. .+..+++|+.+++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 99999999976555678999999999999999988777789999999999999998754 256788999999999999
Q ss_pred CCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHH
Q 013423 225 TKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ 304 (443)
Q Consensus 225 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~ 304 (443)
..++..++|+.|++++|.+.. ++ . ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~-----~~--~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINV-----VR--G--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCE-----EE--C--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cccCCCCcceEEECCCCeeee-----cc--c--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 998888999999999998764 22 1 2347899999999999873 56889999999999999999888889
Q ss_pred hcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCC
Q 013423 305 LSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 345 (443)
Q Consensus 305 l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~ 345 (443)
+..+++|++|++++|++++. +..+..+++|++|++++|+.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp GTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCC
T ss_pred ccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcc
Confidence 99999999999999999986 44556789999999999984
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.8e-28 Score=231.93 Aligned_cols=300 Identities=19% Similarity=0.281 Sum_probs=237.5
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
+++++|+++++..... +.+..+++|++|++++|. +++... +.++++|++|++++| .++. ...+..+++|++
T Consensus 44 ~~L~~L~l~~~~i~~~---~~~~~~~~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~L~~n-~i~~--~~~~~~l~~L~~ 114 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI---QGIEYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTN-KITD--ISALQNLTNLRE 114 (347)
T ss_dssp TTCSEEECCSSCCCCC---TTGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-CCCC--CGGGTTCTTCSE
T ss_pred ccccEEEEeCCccccc---hhhhhcCCccEEEccCCc-cccchh--hhcCCcCCEEEccCC-cccC--chHHcCCCcCCE
Confidence 4799999999864332 347889999999999997 765433 889999999999998 6765 346889999999
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCC
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 224 (443)
|++++|.+....+ +..+++|++|++++|..... ...+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred EECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 9999999987533 88999999999999965543 3458899999999999998875443 88899999999999998
Q ss_pred CCC---CCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHH
Q 013423 225 TKL---PNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS 301 (443)
Q Consensus 225 ~~l---~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~ 301 (443)
.++ ..+++|+.+++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 190 ~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 190 EDISPLASLTSLHYFTAYVNQITDI--------TPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCC--------GGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred cccccccCCCccceeecccCCCCCC--------chhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-
Confidence 874 4688999999999988753 226788999999999999987544 88999999999999998864
Q ss_pred HHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCCC
Q 013423 302 LHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGP 381 (443)
Q Consensus 302 ~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 381 (443)
..+..+++|++|++++|.+++. ..+..+++|++|++++|+ +++..+..+ ..++.++.. . +.+|.+.+.
T Consensus 259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L-~------L~~n~l~~~ 326 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQ-LGNEDMEVI-GGLTNLTTL-F------LSQNHITDI 326 (347)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC-CCGGGHHHH-HTCTTCSEE-E------CCSSSCCCC
T ss_pred -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCc-CCCcChhHh-hccccCCEE-E------ccCCccccc
Confidence 3688899999999999999986 346778999999999998 554444333 456666654 2 346655542
Q ss_pred CCCchhhhhhhhhhcCCCCCCChhhHHhhhhhcHHHHHHhhccccc
Q 013423 382 SPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLS 427 (443)
Q Consensus 382 ~p~~~~~l~~L~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~n~~~ 427 (443)
. | +..+++|+.|++++|.|+
T Consensus 327 ~------------------~--------~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 327 R------------------P--------LASLSKMDSADFANQVIK 346 (347)
T ss_dssp G------------------G--------GGGCTTCSEESSSCC---
T ss_pred c------------------C--------hhhhhccceeehhhhccc
Confidence 2 2 126788888999999876
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1e-29 Score=250.96 Aligned_cols=311 Identities=21% Similarity=0.173 Sum_probs=258.8
Q ss_pred ccccccccchHHHHHHHHHHHhcccc-------chhhHhhhCCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCC
Q 013423 30 QRRSLERLPAHLADSLLRHLIRRRLI-------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRR 102 (443)
Q Consensus 30 ~~~~l~~lp~~l~~~~l~~L~~~~~~-------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 102 (443)
....+..+|..++. .++.+++. .+..+..+ ++|++|+|++|. +....+..+.++++|++|++++|.
T Consensus 19 ~~~~l~~ip~~~~~----~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~- 91 (477)
T 2id5_A 19 HRKRFVAVPEGIPT----ETRLLDLGKNRIKTLNQDEFASF-PHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR- 91 (477)
T ss_dssp CSCCCSSCCSCCCT----TCSEEECCSSCCCEECTTTTTTC-TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-
T ss_pred CCCCcCcCCCCCCC----CCcEEECCCCccceECHhHccCC-CCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCc-
Confidence 44667777775543 23333332 34445544 479999999985 455446778999999999999998
Q ss_pred CChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHH
Q 013423 103 VTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLR 182 (443)
Q Consensus 103 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 182 (443)
++......+.++++|++|++++| .++...+..|..+++|++|++++|.+....+..+..+++|++|++++|.++...+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred CCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 77766667889999999999999 67766566788999999999999999988788899999999999999999988777
Q ss_pred hccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCC-----CCCCCCCCEEecccccccCCchhhhhhHHHh
Q 013423 183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNLSFIQQVGAETDLVLSLTAL 257 (443)
Q Consensus 183 ~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 257 (443)
.+..+++|+.|++.+|.+.+..+..+..+++|+.|++++|.... .....+|+.|++++|.+.. +|. ..+
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~-~~~ 244 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-----VPY-LAV 244 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-----CCH-HHH
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-----cCH-HHh
Confidence 89999999999999999988777789999999999999986543 2244599999999998875 332 468
Q ss_pred ccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCE
Q 013423 258 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKL 337 (443)
Q Consensus 258 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~ 337 (443)
..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 88999999999999999888888999999999999999999888889999999999999999999988888888999999
Q ss_pred EeccCCCCCCHHHHHHH
Q 013423 338 LDLHGGWLLTEDAILQF 354 (443)
Q Consensus 338 L~l~~n~~l~~~~~~~~ 354 (443)
|++++|+...+....++
T Consensus 325 L~l~~N~l~c~c~~~~~ 341 (477)
T 2id5_A 325 LILDSNPLACDCRLLWV 341 (477)
T ss_dssp EECCSSCEECSGGGHHH
T ss_pred EEccCCCccCccchHhH
Confidence 99999986444334444
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=5.6e-29 Score=244.70 Aligned_cols=314 Identities=24% Similarity=0.284 Sum_probs=240.3
Q ss_pred CCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCc
Q 013423 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (443)
Q Consensus 64 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~ 143 (443)
.++|++|++++|..... ++ +..+++|++|++++|. +..... +.++++|++|++++| .+++.. .+..+++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n-~l~~~~--~~~~l~~L~ 137 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNN-QITDID--PLKNLTNLN 137 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-CCCCCG--GGTTCTTCS
T ss_pred hcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCc-cccChh--hcCCCCCCEEECCCC-CCCCCh--HHcCCCCCC
Confidence 35799999999864322 23 7888999999999987 655333 788999999999998 666542 378899999
Q ss_pred EEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCC
Q 013423 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223 (443)
Q Consensus 144 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 223 (443)
+|++++|.+... ..+..+++|+.|++++ .+... ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.
T Consensus 138 ~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 138 RLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQ 210 (466)
T ss_dssp EEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCCC--hhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCc
Confidence 999999988764 2577888999998864 44443 2378889999999999988643 347888999999999998
Q ss_pred CCCC---CCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChH
Q 013423 224 VTKL---PNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 300 (443)
Q Consensus 224 l~~l---~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~ 300 (443)
+.++ ..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++.
T Consensus 211 l~~~~~~~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 280 (466)
T 1o6v_A 211 ISDITPLGILTNLDELSLNGNQLKDI--------GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280 (466)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC
T ss_pred ccccccccccCCCCEEECCCCCcccc--------hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc
Confidence 8774 4678999999999887653 356778999999999999887544 78889999999999998865
Q ss_pred HHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCC
Q 013423 301 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNG 380 (443)
Q Consensus 301 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 380 (443)
.+ +..+++|+.|++++|++++..+ +..+++|++|++++|+. ++... ...++.++.. . +.+|.+.+
T Consensus 281 ~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l-~~~~~---~~~l~~L~~L-~------l~~n~l~~ 345 (466)
T 1o6v_A 281 SP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI-SDISP---VSSLTKLQRL-F------FYNNKVSD 345 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCC-SCCGG---GGGCTTCCEE-E------CCSSCCCC
T ss_pred cc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcC-CCchh---hccCccCCEe-E------CCCCccCC
Confidence 54 7888999999999999988654 66788999999999984 43222 3456666654 2 34677765
Q ss_pred CCCCchhhhhhh------hhhcCCCCCCChhhHHhhhhhcHHHHHHhhcccccc
Q 013423 381 PSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL 428 (443)
Q Consensus 381 ~~p~~~~~l~~L------~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~n~~~~ 428 (443)
. ..+..+++| +|.+.+..|.. ++++|+.|++++|.+++
T Consensus 346 ~--~~l~~l~~L~~L~l~~n~l~~~~~~~--------~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 346 V--SSLANLTNINWLSAGHNQISDLTPLA--------NLTRITQLGLNDQAWTN 389 (466)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCBCGGGT--------TCTTCCEEECCCEEEEC
T ss_pred c--hhhccCCCCCEEeCCCCccCccchhh--------cCCCCCEEeccCCcccC
Confidence 3 356666665 67777665533 78999999999999988
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-29 Score=257.19 Aligned_cols=263 Identities=19% Similarity=0.227 Sum_probs=225.4
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
.+++.++++++. +..--+..+..+++|++|++++|. ++...+..+..+++|++|++++| .++...+..|+.+++|++
T Consensus 51 ~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 51 NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp CCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence 478999999985 332223456789999999999998 87766678899999999999998 677766667889999999
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCC
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 224 (443)
|++++|.++...+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.. +..+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 999999999876666789999999999999999887778999999999999999987642 55688999999999999
Q ss_pred CCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHH
Q 013423 225 TKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ 304 (443)
Q Consensus 225 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~ 304 (443)
.+++..++|+.|++++|.+... + . ...++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..
T Consensus 205 ~~l~~~~~L~~L~ls~n~l~~~-----~--~--~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 205 STLAIPIAVEELDASHNSINVV-----R--G--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp SEEECCTTCSEEECCSSCCCEE-----E--C--SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccccCCchhheeeccCCccccc-----c--c--ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence 9988889999999999987642 2 1 123689999999999987 467889999999999999999888889
Q ss_pred hcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCC
Q 013423 305 LSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 345 (443)
Q Consensus 305 l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~ 345 (443)
+..+++|+.|++++|.+++. +..+..+++|+.|++++|.+
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp GTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCC
T ss_pred hcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCC
Confidence 99999999999999999986 44556789999999999984
No 27
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=7.3e-29 Score=243.78 Aligned_cols=277 Identities=21% Similarity=0.213 Sum_probs=142.3
Q ss_pred CccEEEecCCCCCCHHHH-HHhcCCC----CCcEEeecCCCCCCh----HHHHhccCCCCCcEEecCCCCCCCHHHHHHh
Q 013423 66 NAEAIELRGENSVDAEWM-AYLGAFR----YLRSLNVADCRRVTS----SALWALTGMTCLKELDLSRCVKVTDAGMKHL 136 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~-~~~~~~~----~L~~L~L~~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~ 136 (443)
+|++|++++|. +....+ .....++ +|++|++++|. +++ ..+..+.++++|++|++++| .+++..+..+
T Consensus 57 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l 133 (461)
T 1z7x_W 57 ALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLL 133 (461)
T ss_dssp TCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHH
T ss_pred CcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHH
Confidence 56666666654 222222 2222233 46666666665 443 22444555666666666665 3544433333
Q ss_pred h-----CCCCCcEEEcccccCCHHH----HHHhcCCCCCCEEEecCCCCChhhHHhcc-----CCCCccEEEecCCCCCc
Q 013423 137 L-----SISTLEKLWLSETGLTADG----IALLSSLQNLSVLDLGGLPVTDLVLRSLQ-----VLTKLEYLDLWGSQVSN 202 (443)
Q Consensus 137 ~-----~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~l~~ 202 (443)
. ..++|++|++++|.++... +..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 2 1345666666666555432 33344456666666666665544333332 24456666666665554
Q ss_pred h----hhHhhcCCCCCCEEEcCCCCCCC----------CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEc
Q 013423 203 R----GAAVLKMFPRLSFLNLAWTGVTK----------LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNL 268 (443)
Q Consensus 203 ~----~~~~l~~l~~L~~L~l~~~~l~~----------l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l 268 (443)
. ++..+..+++|+.|++++|.+.. ...+++|+.|++++|.+.......++ ..+..+++|++|++
T Consensus 214 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC--RVLRAKESLKELSL 291 (461)
T ss_dssp THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH--HHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH--HHHhhCCCcceEEC
Confidence 2 34445555666666666665543 12355666666666655433233344 44555566666666
Q ss_pred CCCCCCchhhhcccC-----CCCCCEEEeeCCCCChH----HHHHhcCCCCCCEEEecCcccCchhhhhcCC-----CCC
Q 013423 269 EQTQVSDATLFPLST-----FKELIHLSLRNASLTDV----SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP-----PRS 334 (443)
Q Consensus 269 ~~~~l~~~~~~~l~~-----~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~-----~~~ 334 (443)
++|.+++..+..+.. .++|++|++++|.+++. .+..+..+++|++|++++|.+++.++..+.. .++
T Consensus 292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence 666655544433322 24566666666665543 3344445566666666666665554433321 446
Q ss_pred CCEEeccCCCCCCH
Q 013423 335 LKLLDLHGGWLLTE 348 (443)
Q Consensus 335 L~~L~l~~n~~l~~ 348 (443)
|++|++++|+ +++
T Consensus 372 L~~L~L~~n~-i~~ 384 (461)
T 1z7x_W 372 LRVLWLADCD-VSD 384 (461)
T ss_dssp CCEEECTTSC-CCH
T ss_pred eEEEECCCCC-CCh
Confidence 6666666665 454
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.5e-30 Score=273.82 Aligned_cols=280 Identities=20% Similarity=0.215 Sum_probs=180.8
Q ss_pred ccccccccchHHHHHHHHHHHhcccc-------chhhHhhhCCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCC
Q 013423 30 QRRSLERLPAHLADSLLRHLIRRRLI-------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRR 102 (443)
Q Consensus 30 ~~~~l~~lp~~l~~~~l~~L~~~~~~-------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 102 (443)
+...+..+|. ++ ..++.+++. .+..+..+ .+|++|++++|.....--+..++++++|++|+|++|.
T Consensus 12 s~~~L~~vP~-lp----~~l~~LdLs~N~i~~i~~~~~~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~- 84 (844)
T 3j0a_A 12 RFCNLTQVPQ-VL----NTTERLLLSFNYIRTVTASSFPFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK- 84 (844)
T ss_dssp SCCCSSCCCS-SC----TTCCEEEEESCCCCEECSSSCSSC-CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-
T ss_pred cCCCCCCCCC-CC----CCcCEEECCCCcCCccChhHCccc-ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-
Confidence 3456666776 32 233333332 33344443 4788999988854332224667888889999998887
Q ss_pred CChHHHHhccCCCCCcEEecCCCCCCCHHHHHH--hhCCCCCcEEEcccccCCHHHH-HHhcCCCCCCEEEecCCCCChh
Q 013423 103 VTSSALWALTGMTCLKELDLSRCVKVTDAGMKH--LLSISTLEKLWLSETGLTADGI-ALLSSLQNLSVLDLGGLPVTDL 179 (443)
Q Consensus 103 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~ 179 (443)
+....+..+.++++|++|++++| .+++..+.. +..+++|++|++++|.+....+ ..++++++|++|++++|.+...
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 77666777888888999998888 565432333 6788888888888888876543 4677888888888888877553
Q ss_pred hHHhccC--------------------------CC------CccEEEecCCCCCchhhHhhc------------------
Q 013423 180 VLRSLQV--------------------------LT------KLEYLDLWGSQVSNRGAAVLK------------------ 209 (443)
Q Consensus 180 ~~~~l~~--------------------------l~------~L~~L~l~~~~l~~~~~~~l~------------------ 209 (443)
.+..+.. ++ +|++|++++|.+.+..+..+.
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 3322221 11 266666666654433222221
Q ss_pred ------------------C--CCCCCEEEcCCCCCCC-----CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCC
Q 013423 210 ------------------M--FPRLSFLNLAWTGVTK-----LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLE 264 (443)
Q Consensus 210 ------------------~--l~~L~~L~l~~~~l~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~ 264 (443)
. .++|+.|++++|.+.+ +..+++|+.|++++|.+.+. .+ ..+..+++|+
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~----~~--~~~~~l~~L~ 317 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI----AD--EAFYGLDNLQ 317 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE----CT--TTTTTCSSCC
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC----Ch--HHhcCCCCCC
Confidence 1 2567777777776654 45677788888877776542 22 4556677777
Q ss_pred EEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCc
Q 013423 265 RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 323 (443)
Q Consensus 265 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~ 323 (443)
+|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+++
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred EEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 77777777766666667777777777777777665555556666677777776666554
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3e-30 Score=257.53 Aligned_cols=335 Identities=16% Similarity=0.130 Sum_probs=217.8
Q ss_pred cEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEc
Q 013423 68 EAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWL 147 (443)
Q Consensus 68 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l 147 (443)
++|+++++.. + .++..+. ++|++|++++|. ++...+..+.++++|++|++++| .+++..+..|..+++|++|++
T Consensus 3 ~~l~ls~n~l-~-~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGL-I-HVPKDLS--QKTTILNISQNY-ISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCC-S-SCCCSCC--TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCc-c-ccccccc--ccccEEECCCCc-ccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEec
Confidence 5799999863 3 3454443 899999999998 77767788999999999999999 788766778999999999999
Q ss_pred ccccCCHHHHHHhcCCCCCCEEEecCCCCChh-hHHhccCCCCccEEEecCCCCCchhhHhhcCCCCC--CEEEcCCCCC
Q 013423 148 SETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL--SFLNLAWTGV 224 (443)
Q Consensus 148 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L--~~L~l~~~~l 224 (443)
++|+++.. |.. .+++|++|++++|.+.+. .+..++.+++|++|++++|.+.+ ..+..+++| +.|++++|.+
T Consensus 77 s~N~l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 77 SHNKLVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSCCCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred CCCceeec-Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 99999864 333 799999999999999873 46789999999999999999975 346667777 9999998877
Q ss_pred --C-----CCCC--------------------------CCCCCEEeccccc-----------------------------
Q 013423 225 --T-----KLPN--------------------------ISSLECLNLSFIQ----------------------------- 242 (443)
Q Consensus 225 --~-----~l~~--------------------------~~~L~~L~l~~~~----------------------------- 242 (443)
. .++. +++|+.+++++|.
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccc
Confidence 2 1222 3344444444432
Q ss_pred -ccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcc----------------------------------------
Q 013423 243 -QVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL---------------------------------------- 281 (443)
Q Consensus 243 -~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l---------------------------------------- 281 (443)
+.+.....++ .....++|++|++++|.+++..|..+
T Consensus 231 ~l~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 231 ETTWNSFIRIL---QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEHHHHHHHH---HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEE
T ss_pred ccCHHHHHHHH---HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEE
Confidence 1110000010 01112355566665555543333333
Q ss_pred -------------cCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCch--hhhhcCCCCCCCEEeccCCCCC
Q 013423 282 -------------STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS--GLGSFKPPRSLKLLDLHGGWLL 346 (443)
Q Consensus 282 -------------~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~--~~~~l~~~~~L~~L~l~~n~~l 346 (443)
..+++|++|++++|.+++..|..+..+++|++|++++|++++. .+..+..+++|++|++++|+ +
T Consensus 308 ~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l 386 (520)
T 2z7x_B 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-V 386 (520)
T ss_dssp EEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-C
T ss_pred EcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-C
Confidence 3455566666666666655555556666666666666666652 23445555666666666665 2
Q ss_pred CHHHHHHHHHhCCCceeeeeecccCCCCCCCCCCCCCCchh-hhhhh---hhhcCCCCCCChhhHHhhhhhcHHHHHHhh
Q 013423 347 TEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTS-LRASL---VKQKQDPMPMSHSFLDQRLKYSREELLELQ 422 (443)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~~~-~l~~L---~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~ 422 (443)
++..+.......+.++.. .+.+|.+.+.+|..+. ++..| +|.+. .+|.. +..+++|+.|+++
T Consensus 387 ~~~l~~~~~~~l~~L~~L-------~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~------~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 387 SYDEKKGDCSWTKSLLSL-------NMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQ------VVKLEALQELNVA 452 (520)
T ss_dssp BCCGGGCSCCCCTTCCEE-------ECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGG------GGGCTTCCEEECC
T ss_pred CcccccchhccCccCCEE-------ECcCCCCCcchhhhhcccCCEEECCCCccc-ccchh------hhcCCCCCEEECC
Confidence 211111111222333322 1345666666665553 44444 66666 67877 4489999999999
Q ss_pred cccccccCCCC
Q 013423 423 YSSLSLARPDD 433 (443)
Q Consensus 423 ~n~~~~~~p~~ 433 (443)
+|.++ .+|..
T Consensus 453 ~N~l~-~l~~~ 462 (520)
T 2z7x_B 453 SNQLK-SVPDG 462 (520)
T ss_dssp SSCCC-CCCTT
T ss_pred CCcCC-ccCHH
Confidence 99998 46654
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=9.6e-28 Score=226.86 Aligned_cols=254 Identities=24% Similarity=0.314 Sum_probs=146.0
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
++|++|++++|..... +. +..+++|++|++++|. +++. ..+.++++|++|++++| .+++.. .+..+++|++
T Consensus 66 ~~L~~L~l~~n~i~~~--~~-~~~l~~L~~L~L~~n~-i~~~--~~~~~l~~L~~L~l~~n-~i~~~~--~~~~l~~L~~ 136 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDI--SP-LSNLVKLTNLYIGTNK-ITDI--SALQNLTNLRELYLNED-NISDIS--PLANLTKMYS 136 (347)
T ss_dssp TTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCCC--GGGTTCTTCSEEECTTS-CCCCCG--GGTTCTTCCE
T ss_pred CCccEEEccCCccccc--hh-hhcCCcCCEEEccCCc-ccCc--hHHcCCCcCCEEECcCC-cccCch--hhccCCceeE
Confidence 3566666666643221 12 5666666666666665 4432 34566666666666666 444321 2556666666
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCC
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 224 (443)
|++++|..... +..+..+++|++|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+
T Consensus 137 L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 137 LNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI 211 (347)
T ss_dssp EECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred EECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCC
Confidence 66666643332 2235566666666666666555422 5566666666666666553322 55566666666666665
Q ss_pred CC---CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHH
Q 013423 225 TK---LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS 301 (443)
Q Consensus 225 ~~---l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~ 301 (443)
.. +..+++|+.|++++|.+.+. + .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 212 ~~~~~~~~~~~L~~L~l~~n~l~~~-----~---~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~- 280 (347)
T 4fmz_A 212 TDITPVANMTRLNSLKIGNNKITDL-----S---PLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI- 280 (347)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCC-----G---GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-
T ss_pred CCCchhhcCCcCCEEEccCCccCCC-----c---chhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-
Confidence 55 33456666666666655532 2 145556666666666665542 3455566666666666665543
Q ss_pred HHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCC
Q 013423 302 LHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 302 ~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 344 (443)
..+..+++|+.|++++|.+++..+..+..+++|++|++++|+
T Consensus 281 -~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 281 -SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp -GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred -hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 245556666666666666666555555556666666666666
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=6.8e-28 Score=231.57 Aligned_cols=276 Identities=16% Similarity=0.142 Sum_probs=180.6
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
++|++|++++|. +....+..+..+++|++|++++|. ++...+..+.++++|++|++++| .++......|..+++|++
T Consensus 69 ~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 69 RQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp CCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcE
Confidence 479999999885 343333467888999999999987 77666667888999999999998 666543444678899999
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCch------------------hhH
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR------------------GAA 206 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~------------------~~~ 206 (443)
|++++|.+....+..+..+++|++|++++|.++... +..+++|+++++++|.+.+. .+.
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~ 222 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 222 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence 999999888876777888899999999998887652 34556666666666555421 111
Q ss_pred hhcCCCCCCEEEcCCCCCCC---CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccC
Q 013423 207 VLKMFPRLSFLNLAWTGVTK---LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST 283 (443)
Q Consensus 207 ~l~~l~~L~~L~l~~~~l~~---l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 283 (443)
...++|+.|++++|.+++ +..+++|+.|++++|.+.+. .| ..+..+++|+.|++++|.+++ .+..+..
T Consensus 223 --~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~----~~--~~~~~l~~L~~L~L~~n~l~~-~~~~~~~ 293 (390)
T 3o6n_A 223 --PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI----MY--HPFVKMQRLERLYISNNRLVA-LNLYGQP 293 (390)
T ss_dssp --CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE----ES--GGGTTCSSCCEEECCSSCCCE-EECSSSC
T ss_pred --cccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc----Ch--hHccccccCCEEECCCCcCcc-cCcccCC
Confidence 123455566666655554 33456666666666655432 23 445566666666666666665 3334455
Q ss_pred CCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCC
Q 013423 284 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR 360 (443)
Q Consensus 284 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~ 360 (443)
+++|++|++++|++++ +|..+..+++|+.|++++|.+++.. +..+++|++|++++|+ ++......+....+.
T Consensus 294 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~-~~~~~~~~~~~~~~~ 365 (390)
T 3o6n_A 294 IPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHND-WDCNSLRALFRNVAR 365 (390)
T ss_dssp CTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSC-EEHHHHHHHTTTCCT
T ss_pred CCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCC-ccchhHHHHHHHHHh
Confidence 6666666666666653 3334455666777777776666542 4455677777777777 555555555444443
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.6e-29 Score=254.47 Aligned_cols=341 Identities=18% Similarity=0.136 Sum_probs=238.5
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
...++++++++.. + .+|..+ .++|++|++++|. ++...+..+.++++|++|++++| .+++..+..|..+++|++
T Consensus 31 ~~~~~l~ls~~~L-~-~ip~~~--~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 31 ELESMVDYSNRNL-T-HVPKDL--PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp --CCEEECTTSCC-C-SCCTTS--CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCCC-c-cCCCCC--CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCE
Confidence 3568999999863 3 244433 3899999999998 77766778999999999999999 788766778899999999
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChh-hHHhccCCCCccEEEecCCCCCchhhHhhcCCCCC--CEEEcCC
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL--SFLNLAW 221 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L--~~L~l~~ 221 (443)
|++++|.++.. |.. .+++|++|++++|.+... .+..++.+++|++|++++|.+.+. .+..+++| +.|++++
T Consensus 105 L~Ls~N~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred EECCCCcCCcc-Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 99999999864 333 799999999999999874 347889999999999999998753 34445555 9999999
Q ss_pred CCC--CC-----CC--------------------------CCCCCCEEecccccccCC----------------------
Q 013423 222 TGV--TK-----LP--------------------------NISSLECLNLSFIQQVGA---------------------- 246 (443)
Q Consensus 222 ~~l--~~-----l~--------------------------~~~~L~~L~l~~~~~~~~---------------------- 246 (443)
|.+ .. ++ .+++|+.+++++|.....
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 887 32 11 234566666665521000
Q ss_pred ---chhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcc------------------------------------------
Q 013423 247 ---ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL------------------------------------------ 281 (443)
Q Consensus 247 ---~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l------------------------------------------ 281 (443)
....+..+......++|++|++++|.+++..|..+
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 00011111112223477788888777665444433
Q ss_pred -----------cCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchh--hhhcCCCCCCCEEeccCCCCCCH
Q 013423 282 -----------STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG--LGSFKPPRSLKLLDLHGGWLLTE 348 (443)
Q Consensus 282 -----------~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~--~~~l~~~~~L~~L~l~~n~~l~~ 348 (443)
..+++|++|++++|.+++..|..+..+++|++|++++|++++.. +..+..+++|++|++++|+ ++.
T Consensus 339 ~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~ 417 (562)
T 3a79_B 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNS 417 (562)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBS
T ss_pred cCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCC
Confidence 45677888888888888777777788888888888888888643 4556777888888888887 332
Q ss_pred HHHHHHHHhCCCceeeeeecccCCCCCCCCCCCCCCchh-hhhhh---hhhcCCCCCCChhhHHhhhhhcHHHHHHhhcc
Q 013423 349 DAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTS-LRASL---VKQKQDPMPMSHSFLDQRLKYSREELLELQYS 424 (443)
Q Consensus 349 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~~~-~l~~L---~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~n 424 (443)
..+.......+.++.. . +.+|.+.+.+|..+. ++..| +|.+. .+|.+ +..+++|+.|++++|
T Consensus 418 ~~~~~~~~~l~~L~~L-~------l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~------~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 418 HAYDRTCAWAESILVL-N------LSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKD------VTHLQALQELNVASN 483 (562)
T ss_dssp CCSSCCCCCCTTCCEE-E------CCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTT------TTSSCCCSEEECCSS
T ss_pred ccChhhhcCcccCCEE-E------CCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChh------hcCCCCCCEEECCCC
Confidence 1111122223444433 1 457777777777663 55555 66666 67887 348999999999999
Q ss_pred cccccCCCC
Q 013423 425 SLSLARPDD 433 (443)
Q Consensus 425 ~~~~~~p~~ 433 (443)
.++ .+|..
T Consensus 484 ~l~-~l~~~ 491 (562)
T 3a79_B 484 QLK-SVPDG 491 (562)
T ss_dssp CCC-CCCTT
T ss_pred CCC-CCCHH
Confidence 999 46654
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=3.7e-28 Score=244.09 Aligned_cols=171 Identities=20% Similarity=0.201 Sum_probs=136.0
Q ss_pred ccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEE
Q 013423 67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLW 146 (443)
Q Consensus 67 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~ 146 (443)
.-..+.+++.. ..+|..+ .++|++|++++|. ++...+..+.++++|++|++++| .+++..+..|..+++|++|+
T Consensus 7 ~~~c~~~~~~l--~~ip~~~--~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 7 SGVCDGRSRSF--TSIPSGL--TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp TSEEECTTSCC--SSCCSCC--CTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred CceEECCCCcc--ccccccC--CCCccEEECcCCc-cCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEE
Confidence 34466666532 2233322 3799999999998 87766778899999999999999 78776667789999999999
Q ss_pred cccccCCHHHHHHhcCCCCCCEEEecCCCCChh-hHHhccCCCCccEEEecCCCCCchh-hHhhcCCCCCCEEEcCCCCC
Q 013423 147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRG-AAVLKMFPRLSFLNLAWTGV 224 (443)
Q Consensus 147 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l 224 (443)
+++|.+.+..+..++.+++|++|++++|.+... .+..+..+++|++|++++|.+.+.+ +..+.++++|+.|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 999999998888899999999999999998863 3457889999999999999844444 46789999999999999987
Q ss_pred CC-----CCCCCCCCEEecccccc
Q 013423 225 TK-----LPNISSLECLNLSFIQQ 243 (443)
Q Consensus 225 ~~-----l~~~~~L~~L~l~~~~~ 243 (443)
.+ +..+++|+.|++++|..
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBS
T ss_pred cccChhhhhccccCceEecccCcc
Confidence 75 44555566666655543
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=4.4e-29 Score=251.98 Aligned_cols=160 Identities=18% Similarity=0.223 Sum_probs=132.6
Q ss_pred hCCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCC
Q 013423 63 FKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTL 142 (443)
Q Consensus 63 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L 142 (443)
+++++++|++++|. +....+..+..+++|++|++++|. ++...+..++++++|++|++++| .++...+..|..+++|
T Consensus 26 l~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 26 LPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSL 102 (570)
T ss_dssp SCSSCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTC
T ss_pred ccccccEEEccCCc-cCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCcccc
Confidence 45689999999996 444334578899999999999998 87766778899999999999999 6776656788999999
Q ss_pred cEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChh-hHHhccCCCCccEEEecCCCCCchhhHhhcCCCCC----CEE
Q 013423 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL----SFL 217 (443)
Q Consensus 143 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L----~~L 217 (443)
++|++++|.+....+..++.+++|++|++++|.+... .+..++.+++|++|++++|.+.+..+..++.+++| ..+
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence 9999999999886555688999999999999998863 47789999999999999999887666666666666 667
Q ss_pred EcCCCCCC
Q 013423 218 NLAWTGVT 225 (443)
Q Consensus 218 ~l~~~~l~ 225 (443)
++++|.+.
T Consensus 183 ~l~~n~l~ 190 (570)
T 2z63_A 183 DLSLNPMN 190 (570)
T ss_dssp ECTTCCCC
T ss_pred ccCCCCce
Confidence 77766554
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.2e-27 Score=233.74 Aligned_cols=323 Identities=17% Similarity=0.114 Sum_probs=200.5
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
++|++|++++|.... + +.++.+++|++|++++|. ++.. .++.+++|++|++++| .+++. .++.+++|++
T Consensus 42 ~~L~~L~Ls~n~l~~--~-~~l~~l~~L~~L~Ls~n~-l~~~---~~~~l~~L~~L~Ls~N-~l~~~---~~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD--M-TGIEKLTGLTKLICTSNN-ITTL---DLSQNTNLTYLACDSN-KLTNL---DVTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCC--C-TTGGGCTTCSEEECCSSC-CSCC---CCTTCTTCSEEECCSS-CCSCC---CCTTCTTCCE
T ss_pred CCCCEEEccCCCccc--C-hhhcccCCCCEEEccCCc-CCeE---ccccCCCCCEEECcCC-CCcee---ecCCCCcCCE
Confidence 368888888875332 2 257788888888888887 6553 2677888888888887 56653 2677888888
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCC
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 224 (443)
|++++|.++.. .++.+++|++|++++|.+++. .+..+++|++|++++|...+.+ .+..+++|+.|++++|.+
T Consensus 111 L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 111 LNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp EECCSSCCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence 88888887764 267788888888888887774 3677788888888887543333 366778888888888877
Q ss_pred CC--CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHH
Q 013423 225 TK--LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 302 (443)
Q Consensus 225 ~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~ 302 (443)
++ +..+++|+.|++++|.+.+. .+..+++|+.|++++|.+++ .| +..+++|+.|++++|++++..+
T Consensus 183 ~~l~l~~l~~L~~L~l~~N~l~~~---------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 183 TELDVSQNKLLNRLNCDTNNITKL---------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CCCCCTTCTTCCEEECCSSCCSCC---------CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred ceeccccCCCCCEEECcCCcCCee---------ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence 76 34667788888888777652 25567778888888887776 33 6677788888888887776532
Q ss_pred HHhcCCCCCCE----------EEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHH-------HHhCCCceeee
Q 013423 303 HQLSSLSKLTN----------LSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF-------CKMHPRIEVWH 365 (443)
Q Consensus 303 ~~l~~l~~L~~----------L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~-------~~~~~~l~~~~ 365 (443)
..+++|+. |++++|.+.+..+ +..+++|+.|++++|+.+.. .+... ...++.++..
T Consensus 251 ---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~-l~~~~~~L~~L~l~~~~~L~~L- 323 (457)
T 3bz5_A 251 ---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL-LDCQAAGITELDLSQNPKLVYL- 323 (457)
T ss_dssp ---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE-EECTTCCCSCCCCTTCTTCCEE-
T ss_pred ---HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccce-eccCCCcceEechhhcccCCEE-
Confidence 33344433 3333333222222 23456666666666653220 00000 0011122211
Q ss_pred eecccCCCCCCCCCCCCCCchhhhhhh------hhhcCCCCCCChhhHHh-------hhhhcHHHHHHhhcccccccCCC
Q 013423 366 ELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQ-------RLKYSREELLELQYSSLSLARPD 432 (443)
Q Consensus 366 ~~~~~~~~~~~~l~~~~p~~~~~l~~L------~n~l~~~~p~~~~~ld~-------~~~l~~L~~L~l~~n~~~~~~p~ 432 (443)
.+.+|.+++ ++ +..++.| +|.+++ +|. +..++. ..++..|+.+++++|.++|.||.
T Consensus 324 ------~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~-l~~-L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 324 ------YLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp ------ECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB-CTT-GGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCT
T ss_pred ------ECCCCcccc-cc--cccCCcCcEEECCCCCCCC-ccc-cccccccCCcEEecceeeecCccccccCcEEEEcCh
Confidence 123455555 22 4444443 444443 111 011110 01345678899999999999997
Q ss_pred CCcc
Q 013423 433 DSST 436 (443)
Q Consensus 433 ~~~~ 436 (443)
....
T Consensus 393 ~~~~ 396 (457)
T 3bz5_A 393 DLLD 396 (457)
T ss_dssp TCBC
T ss_pred hHhc
Confidence 6443
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.3e-26 Score=227.83 Aligned_cols=320 Identities=21% Similarity=0.265 Sum_probs=224.3
Q ss_pred HHHhhccccccccchHHHHHHHHHHHhcccc------chhhHhhhCCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeec
Q 013423 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLI------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVA 98 (443)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~ 98 (443)
+.+.+....+..+|. +.. ++.|+.+++. .+. +..+ ++|++|++++|..... +. +..+++|++|+++
T Consensus 49 ~~L~l~~~~i~~l~~-~~~--l~~L~~L~Ls~n~l~~~~~-~~~l-~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 49 TTLQADRLGIKSIDG-VEY--LNNLTQINFSNNQLTDITP-LKNL-TKLVDILMNNNQIADI--TP-LANLTNLTGLTLF 120 (466)
T ss_dssp CEEECCSSCCCCCTT-GGG--CTTCCEEECCSSCCCCCGG-GTTC-TTCCEEECCSSCCCCC--GG-GTTCTTCCEEECC
T ss_pred cEEecCCCCCccCcc-hhh--hcCCCEEECCCCccCCchh-hhcc-ccCCEEECCCCccccC--hh-hcCCCCCCEEECC
Confidence 344445666777764 333 5555555543 333 4433 5899999999964332 22 8899999999999
Q ss_pred CCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCCh
Q 013423 99 DCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD 178 (443)
Q Consensus 99 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 178 (443)
+|. ++... .+.++++|++|++++| .+.+. ..+..+++|++|+++ +.+... ..+..+++|+.|++++|.+..
T Consensus 121 ~n~-l~~~~--~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 121 NNQ-ITDID--PLKNLTNLNRLELSSN-TISDI--SALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp SSC-CCCCG--GGTTCTTCSEEEEEEE-EECCC--GGGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred CCC-CCCCh--HHcCCCCCCEEECCCC-ccCCC--hhhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCC
Confidence 997 66543 3889999999999998 56653 357788888888886 344433 237788888888888888776
Q ss_pred hhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCC---CCCCCCCCEEecccccccCCchhhhhhHH
Q 013423 179 LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK---LPNISSLECLNLSFIQQVGAETDLVLSLT 255 (443)
Q Consensus 179 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~---l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 255 (443)
. ..+..+++|++|++++|.+.+..+ ++.+++|+.|++++|.++. +..+++|+.|++++|.+.+. +
T Consensus 192 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-----~--- 259 (466)
T 1o6v_A 192 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-----A--- 259 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC-----G---
T ss_pred C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc-----h---
Confidence 4 347788888888888888775544 6678888888888888776 44677888888888877653 2
Q ss_pred HhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCC
Q 013423 256 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 335 (443)
Q Consensus 256 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L 335 (443)
.+..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 333 (466)
T 1o6v_A 260 PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 333 (466)
T ss_dssp GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccC
Confidence 26677888888888888876443 6778888888888888776543 6777888888888888877654 5567788
Q ss_pred CEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCCCCCCchhhhhhh
Q 013423 336 KLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL 392 (443)
Q Consensus 336 ~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~~~~l~~L 392 (443)
++|++++|+. ++. . ....++.++.. . +.+|.+.+..| +..++.|
T Consensus 334 ~~L~l~~n~l-~~~--~-~l~~l~~L~~L-~------l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 334 QRLFFYNNKV-SDV--S-SLANLTNINWL-S------AGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp CEEECCSSCC-CCC--G-GGTTCTTCCEE-E------CCSSCCCBCGG--GTTCTTC
T ss_pred CEeECCCCcc-CCc--h-hhccCCCCCEE-e------CCCCccCccch--hhcCCCC
Confidence 8888888873 321 1 22344545443 1 34667766555 5555554
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=6.8e-29 Score=230.94 Aligned_cols=245 Identities=15% Similarity=0.164 Sum_probs=144.3
Q ss_pred CCcEEeecCCCCCCh--HHHHhccCCCCCcEEecCC-CCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCC
Q 013423 91 YLRSLNVADCRRVTS--SALWALTGMTCLKELDLSR-CVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS 167 (443)
Q Consensus 91 ~L~~L~L~~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 167 (443)
++++|+++++. ++. ..+..+.++++|++|++++ | .+++..+..|..+++|++|++++|.+++..|..+..+++|+
T Consensus 51 ~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 44444444444 332 2333444444555555542 3 23322233444455555555555554443444445555555
Q ss_pred EEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCC-CCCEEEcCCCCCCC-----CCCCCCCCEEecccc
Q 013423 168 VLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFP-RLSFLNLAWTGVTK-----LPNISSLECLNLSFI 241 (443)
Q Consensus 168 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~~~l~~-----l~~~~~L~~L~l~~~ 241 (443)
+|++++|.+.+..+..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+.+ +..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 555555554443344455555555555555555545555555554 55555555554442 22333 666666666
Q ss_pred cccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCccc
Q 013423 242 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 321 (443)
Q Consensus 242 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i 321 (443)
.+.+. .| ..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+++..|..+..+++|++|++++|++
T Consensus 208 ~l~~~----~~--~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 208 MLEGD----AS--VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EEEEC----CG--GGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred cccCc----CC--HHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 55532 33 5566778888888888888765544 67778888888888888877777888888888888888888
Q ss_pred CchhhhhcCCCCCCCEEeccCCCCC
Q 013423 322 TNSGLGSFKPPRSLKLLDLHGGWLL 346 (443)
Q Consensus 322 ~~~~~~~l~~~~~L~~L~l~~n~~l 346 (443)
++..|.. ..+++|+.+++++|+.+
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred cccCCCC-ccccccChHHhcCCCCc
Confidence 8775654 66778888888888743
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.3e-27 Score=239.02 Aligned_cols=276 Identities=16% Similarity=0.142 Sum_probs=197.4
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
++|++|+|++|. +....+..++.+++|++|++++|. ++...+..++++++|++|++++| .++......|..+++|++
T Consensus 75 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 75 RQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp CCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCE
Confidence 479999999985 444444577889999999999997 77766667888999999999998 677554445678999999
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCch------------------hhH
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR------------------GAA 206 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~------------------~~~ 206 (443)
|++++|.+....+..+..+++|++|++++|.+++.. +..+++|++|++++|.+.+. ++.
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~ 228 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 228 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc
Confidence 999999998877778888999999999999887753 34456666666666555421 111
Q ss_pred hhcCCCCCCEEEcCCCCCCC---CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccC
Q 013423 207 VLKMFPRLSFLNLAWTGVTK---LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST 283 (443)
Q Consensus 207 ~l~~l~~L~~L~l~~~~l~~---l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 283 (443)
...++|+.|++++|.+++ +..+++|+.|++++|.+.+. .| ..+..+++|+.|++++|.+++ .+..+..
T Consensus 229 --~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~----~~--~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~ 299 (597)
T 3oja_B 229 --PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI----MY--HPFVKMQRLERLYISNNRLVA-LNLYGQP 299 (597)
T ss_dssp --SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE----ES--GGGTTCSSCCEEECTTSCCCE-EECSSSC
T ss_pred --ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC----CH--HHhcCccCCCEEECCCCCCCC-CCccccc
Confidence 112456666666666665 34567777777777776542 34 556677778888888877776 4455566
Q ss_pred CCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCC
Q 013423 284 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR 360 (443)
Q Consensus 284 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~ 360 (443)
+++|+.|++++|.++. +|..+..+++|+.|++++|.+++.. +..+++|+.|++++|+ ++......+....+.
T Consensus 300 l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~-~~~~~~~~~~~~~~~ 371 (597)
T 3oja_B 300 IPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHND-WDCNSLRALFRNVAR 371 (597)
T ss_dssp CTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSC-EEHHHHHHHTTTCCT
T ss_pred CCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCC-CCChhHHHHHHHHhh
Confidence 7788888888887773 4445666778888888888877653 4556788888888888 666666666554443
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1.5e-28 Score=251.10 Aligned_cols=142 Identities=19% Similarity=0.208 Sum_probs=112.8
Q ss_pred CCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCc
Q 013423 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (443)
Q Consensus 64 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~ 143 (443)
|.++++|+|++|. ++.--+..|.++++|++|+|++|. ++...+.+|.++++|++|++++| .++......|.++++|+
T Consensus 51 p~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 51 PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCC
T ss_pred CcCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCC
Confidence 4479999999985 443333568889999999999997 77766777889999999999998 67766566788899999
Q ss_pred EEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChh-hHHhccCCCCccEEEecCCCCCchhhHhh
Q 013423 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGAAVL 208 (443)
Q Consensus 144 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~l 208 (443)
+|++++|+++...+..|+++++|++|++++|.+... .+..+..+++|++|++++|.+++..+..+
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 999999998887666788899999999999987653 35667788899999999888775544443
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3.9e-26 Score=223.03 Aligned_cols=293 Identities=17% Similarity=0.147 Sum_probs=223.8
Q ss_pred HhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCC
Q 013423 85 YLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQ 164 (443)
Q Consensus 85 ~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 164 (443)
.++.+++|++|++++|. +++. ..+..+++|++|++++| .+++. .++.+++|++|++++|.+++. .++.++
T Consensus 37 ~~~~l~~L~~L~Ls~n~-l~~~--~~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l~~~---~~~~l~ 106 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS-ITDM--TGIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLT 106 (457)
T ss_dssp EHHHHTTCCEEECCSSC-CCCC--TTGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSCC---CCTTCT
T ss_pred ChhHcCCCCEEEccCCC-cccC--hhhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCCcee---ecCCCC
Confidence 45668999999999997 7653 26889999999999999 67764 278999999999999999885 278999
Q ss_pred CCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCC-CCC--CCCCCCCCEEecccc
Q 013423 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTK--LPNISSLECLNLSFI 241 (443)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-l~~--l~~~~~L~~L~l~~~ 241 (443)
+|++|++++|.+++. .++.+++|++|++++|.+++. .++.+++|+.|++++|. +.. +..+++|+.|++++|
T Consensus 107 ~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180 (457)
T ss_dssp TCCEEECCSSCCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred cCCEEECCCCcCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence 999999999999885 288999999999999999864 37889999999999994 443 668899999999999
Q ss_pred cccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCccc
Q 013423 242 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 321 (443)
Q Consensus 242 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i 321 (443)
.+.+ +| +..+++|+.|++++|.+++. .+..+++|+.|++++|++++. | +..+++|+.|++++|++
T Consensus 181 ~l~~-----l~----l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 181 KITE-----LD----VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp CCCC-----CC----CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCC
T ss_pred ccce-----ec----cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcC
Confidence 8876 22 66789999999999999874 478899999999999999874 4 78899999999999999
Q ss_pred CchhhhhcCCCC-------CCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCCCCCCc--------h
Q 013423 322 TNSGLGSFKPPR-------SLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSR--------T 386 (443)
Q Consensus 322 ~~~~~~~l~~~~-------~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~--------~ 386 (443)
++..+..+..+. +|+.|++++|+.+.. .+ ...++.++.. . +.+|...+.+|.. +
T Consensus 246 ~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~-~~---~~~l~~L~~L-~------Ls~n~~l~~l~~~~~~L~~L~l 314 (457)
T 3bz5_A 246 TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY-FQ---AEGCRKIKEL-D------VTHNTQLYLLDCQAAGITELDL 314 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE-EE---CTTCTTCCCC-C------CTTCTTCCEEECTTCCCSCCCC
T ss_pred CCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc-cc---ccccccCCEE-E------CCCCcccceeccCCCcceEech
Confidence 987544433322 445555666653221 11 1233444433 1 2344444444432 2
Q ss_pred hhhhhh------hhhcCCCCCCChhhHHhhhhhcHHHHHHhhcccccc
Q 013423 387 SLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL 428 (443)
Q Consensus 387 ~~l~~L------~n~l~~~~p~~~~~ld~~~~l~~L~~L~l~~n~~~~ 428 (443)
..++.| +|.+++ ++ +.++++|+.|++++|.+++
T Consensus 315 ~~~~~L~~L~L~~N~l~~-l~--------l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 315 SQNPKLVYLYLNNTELTE-LD--------VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TTCTTCCEEECTTCCCSC-CC--------CTTCTTCSEEECCSSCCCB
T ss_pred hhcccCCEEECCCCcccc-cc--------cccCCcCcEEECCCCCCCC
Confidence 333333 666666 33 3378899999999999987
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.6e-26 Score=216.85 Aligned_cols=264 Identities=18% Similarity=0.181 Sum_probs=215.0
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEE
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 145 (443)
+++.++++++... .++..+ .+++++|++++|. ++......+.++++|++|++++| .++...+..|..+++|++|
T Consensus 32 ~l~~l~~~~~~l~--~lp~~~--~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLE--KVPKDL--PPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCC--SCCCSC--CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCcc--ccCccC--CCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEE
Confidence 6889999887532 233222 3789999999998 77766667889999999999998 6776656778899999999
Q ss_pred EcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCc--hhhHhhcCCCCCCEEEcCCCC
Q 013423 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN--RGAAVLKMFPRLSFLNLAWTG 223 (443)
Q Consensus 146 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~~~ 223 (443)
++++|.++.. +..+ .++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.
T Consensus 106 ~Ls~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCCcc-Chhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 9999988754 3222 2789999999999998877888999999999999998853 556778889999999999999
Q ss_pred CCCCCC--CCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHH
Q 013423 224 VTKLPN--ISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS 301 (443)
Q Consensus 224 l~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~ 301 (443)
++.++. .++|+.|++++|.+.+. .+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+
T Consensus 183 l~~l~~~~~~~L~~L~l~~n~l~~~----~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 183 ITTIPQGLPPSLTELHLDGNKITKV----DA--ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp CCSCCSSCCTTCSEEECTTSCCCEE----CT--GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred cccCCccccccCCEEECCCCcCCcc----CH--HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 888652 47899999999987652 23 56778899999999999999877778889999999999999988 45
Q ss_pred HHHhcCCCCCCEEEecCcccCchhhhhcCC------CCCCCEEeccCCCC
Q 013423 302 LHQLSSLSKLTNLSIRDAVLTNSGLGSFKP------PRSLKLLDLHGGWL 345 (443)
Q Consensus 302 ~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~------~~~L~~L~l~~n~~ 345 (443)
|..+..+++|++|++++|++++.++..+.. .++++.|++++|+.
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 667888899999999999999887766643 36788999999884
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.2e-26 Score=217.77 Aligned_cols=266 Identities=18% Similarity=0.242 Sum_probs=215.9
Q ss_pred hCCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCC
Q 013423 63 FKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTL 142 (443)
Q Consensus 63 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L 142 (443)
++++++.|++++|. +....+..++.+++|++|++++|. ++...+..+.++++|++|++++| .++.. +.. ..++|
T Consensus 50 ~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l-~~~--~~~~L 123 (330)
T 1xku_A 50 LPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKN-QLKEL-PEK--MPKTL 123 (330)
T ss_dssp CCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-CCSBC-CSS--CCTTC
T ss_pred CCCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCC-cCCcc-Chh--hcccc
Confidence 34589999999996 343333468899999999999998 77766778899999999999998 56632 211 23799
Q ss_pred cEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCCh--hhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcC
Q 013423 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD--LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220 (443)
Q Consensus 143 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 220 (443)
++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+.. +|..+. ++|+.|+++
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~ 200 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLD 200 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECT
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECC
Confidence 999999999998888889999999999999999864 445678899999999999999874 444333 799999999
Q ss_pred CCCCCC-----CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCC
Q 013423 221 WTGVTK-----LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 295 (443)
Q Consensus 221 ~~~l~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 295 (443)
+|.++. +..+++|+.|++++|.+.+. .+ ..+..+++|++|++++|.++. .|..+..+++|++|++++|
T Consensus 201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~--~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAV----DN--GSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp TSCCCEECTGGGTTCTTCCEEECCSSCCCEE----CT--TTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCcee----Ch--hhccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCC
Confidence 999875 56789999999999988753 22 457788999999999999985 7777889999999999999
Q ss_pred CCChHHHHHhcC------CCCCCEEEecCcccCc--hhhhhcCCCCCCCEEeccCCC
Q 013423 296 SLTDVSLHQLSS------LSKLTNLSIRDAVLTN--SGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 296 ~i~~~~~~~l~~------l~~L~~L~l~~n~i~~--~~~~~l~~~~~L~~L~l~~n~ 344 (443)
.+++..+..+.. .++++.+++++|.+.. ..+..+..+.+++.+++++|+
T Consensus 274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 998776666643 3789999999999764 445678888999999999885
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.6e-28 Score=228.35 Aligned_cols=248 Identities=17% Similarity=0.167 Sum_probs=217.3
Q ss_pred CCccEEEecCCCCCCH--HHHHHhcCCCCCcEEeecC-CCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCC
Q 013423 65 HNAEAIELRGENSVDA--EWMAYLGAFRYLRSLNVAD-CRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIST 141 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~--~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~ 141 (443)
.++++|+++++. +.+ .++..++.+++|++|++++ |. +....+..+.++++|++|++++| .+++..+..+..+++
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~-l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINN-LVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETT-EESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCc-ccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCC
Confidence 479999999986 444 6778899999999999995 65 66556778899999999999998 676555677899999
Q ss_pred CcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCC-CccEEEecCCCCCchhhHhhcCCCCCCEEEcC
Q 013423 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLT-KLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220 (443)
Q Consensus 142 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 220 (443)
|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..++ +|++|++++|.+.+..|..+..++ |+.|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999999999877788899999999999999999877788888888 999999999999888899999887 9999999
Q ss_pred CCCCCC-----CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCC
Q 013423 221 WTGVTK-----LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 295 (443)
Q Consensus 221 ~~~l~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 295 (443)
+|.+.+ +..+++|+.|++++|.+.+. ++ .+..+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFD----LG---KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCB----GG---GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeee----cC---cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 998774 66899999999999998753 33 3678899999999999999889999999999999999999
Q ss_pred CCChHHHHHhcCCCCCCEEEecCcc-cCch
Q 013423 296 SLTDVSLHQLSSLSKLTNLSIRDAV-LTNS 324 (443)
Q Consensus 296 ~i~~~~~~~l~~l~~L~~L~l~~n~-i~~~ 324 (443)
.+++.+|.. ..+++|+.+++++|. +.+.
T Consensus 279 ~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 279 NLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp EEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred cccccCCCC-ccccccChHHhcCCCCccCC
Confidence 998877755 788999999999997 6553
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=3.2e-27 Score=221.83 Aligned_cols=263 Identities=18% Similarity=0.200 Sum_probs=195.0
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEE
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 145 (443)
+++.++++++... .++..+ .+++++|++++|. ++...+..+.++++|++|++++| .++...+..|..+++|++|
T Consensus 34 ~l~~l~~~~~~l~--~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--AVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCS--SCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCcc--ccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEE
Confidence 5788888877432 233322 3688888888887 66655667788888888888887 6776556677788888888
Q ss_pred EcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCc--hhhHhhcCCCCCCEEEcCCCC
Q 013423 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN--RGAAVLKMFPRLSFLNLAWTG 223 (443)
Q Consensus 146 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~~~ 223 (443)
++++|.+... |..+. ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|.
T Consensus 108 ~L~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 108 YISKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp ECCSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred ECCCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 8888887753 22222 788888888888877655667888888888888887752 455666666 88888888888
Q ss_pred CCCCCC--CCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHH
Q 013423 224 VTKLPN--ISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS 301 (443)
Q Consensus 224 l~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~ 301 (443)
++.++. .++|+.|++++|.+.+. .+ ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+
T Consensus 184 l~~l~~~~~~~L~~L~l~~n~i~~~----~~--~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 184 LTGIPKDLPETLNELHLDHNKIQAI----EL--EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp CSSCCSSSCSSCSCCBCCSSCCCCC----CT--TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred CCccCccccCCCCEEECCCCcCCcc----CH--HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 887652 36788888888877653 22 45667788888888888888766667888888888888888887 45
Q ss_pred HHHhcCCCCCCEEEecCcccCchhhhhcCC------CCCCCEEeccCCCC
Q 013423 302 LHQLSSLSKLTNLSIRDAVLTNSGLGSFKP------PRSLKLLDLHGGWL 345 (443)
Q Consensus 302 ~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~------~~~L~~L~l~~n~~ 345 (443)
|..+..+++|++|++++|++++.++..+.. ..+|+.|++++|+.
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 556778888888888888888876666553 35688888888874
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=4.4e-27 Score=220.84 Aligned_cols=264 Identities=17% Similarity=0.228 Sum_probs=188.7
Q ss_pred CCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCc
Q 013423 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (443)
Q Consensus 64 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~ 143 (443)
++++++|++++|. +....+..+..+++|++|++++|. ++...+..+.++++|++|++++| .++.. +..+ .++|+
T Consensus 53 ~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l-~~~~--~~~L~ 126 (332)
T 2ft3_A 53 SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEI-PPNL--PSSLV 126 (332)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSS-CCCSC-CSSC--CTTCC
T ss_pred CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCC-cCCcc-Cccc--cccCC
Confidence 3578888888875 333334467788888888888887 77656677888888888888887 55532 1112 27888
Q ss_pred EEEcccccCCHHHHHHhcCCCCCCEEEecCCCCCh--hhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCC
Q 013423 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD--LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221 (443)
Q Consensus 144 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 221 (443)
+|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+++ +|..+. ++|+.|++++
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~ 202 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDH 202 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCS
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCC
Confidence 88888888877666667788888888888888753 334555666 78888888887764 443332 6788888888
Q ss_pred CCCCC-----CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCC
Q 013423 222 TGVTK-----LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS 296 (443)
Q Consensus 222 ~~l~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~ 296 (443)
|.++. +..+++|+.|++++|.+.+. .+ ..+..+++|+.|++++|.++. .|..+..+++|+.|++++|.
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~----~~--~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMI----EN--GSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCC----CT--TGGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcC----Ch--hHhhCCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCC
Confidence 87765 44677888888888877653 22 356777888888888888874 66667888888888888888
Q ss_pred CChHHHHHhcC------CCCCCEEEecCcccC--chhhhhcCCCCCCCEEeccCCC
Q 013423 297 LTDVSLHQLSS------LSKLTNLSIRDAVLT--NSGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 297 i~~~~~~~l~~------l~~L~~L~l~~n~i~--~~~~~~l~~~~~L~~L~l~~n~ 344 (443)
+++..+..+.. .++|+.|++++|.++ +..+..+..+++|+.+++++|+
T Consensus 276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 87766555543 356888888888876 4556667777888888888775
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.5e-26 Score=217.54 Aligned_cols=270 Identities=21% Similarity=0.192 Sum_probs=187.8
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEE
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 145 (443)
.....+.+++.. ..+|..+ .++|++|++++|. ++......+.++++|++|++++| .+++..+..|..+++|++|
T Consensus 32 ~~~~c~~~~~~l--~~iP~~~--~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 32 RNGICKGSSGSL--NSIPSGL--TEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp TTSEEECCSTTC--SSCCTTC--CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred CCeEeeCCCCCc--ccccccc--cccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEE
Confidence 344466665532 1223222 2467777777776 66544445667777777777776 5665444556677777777
Q ss_pred EcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhH-HhccCCCCccEEEecCC-CCCchhhHhhcCCCCCCEEEcCCCC
Q 013423 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVL-RSLQVLTKLEYLDLWGS-QVSNRGAAVLKMFPRLSFLNLAWTG 223 (443)
Q Consensus 146 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~~ 223 (443)
++++|.++...+..+..+++|++|++++|.+..... ..+..+++|++|++++| .+....+..+..+++|+.|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 777777776655556777777777777777665432 35667777777777777 3554445667777777777777776
Q ss_pred CCC-----CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhccc---CCCCCCEEEeeCC
Q 013423 224 VTK-----LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS---TFKELIHLSLRNA 295 (443)
Q Consensus 224 l~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~---~~~~L~~L~l~~n 295 (443)
+.+ +..+++|+.|++++|.+.. ++. ..+..+++|+.|++++|.+++..+..+. ..+.++.++++++
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~-----~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHIL-----LLE-IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTT-----HHH-HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred cCccCHHHHhccccCCeecCCCCcccc-----chh-hhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 654 4566778888888777643 331 3455688999999999988875544433 4678999999999
Q ss_pred CCChH----HHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCC
Q 013423 296 SLTDV----SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 347 (443)
Q Consensus 296 ~i~~~----~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~ 347 (443)
.+++. +|..+..+++|++|++++|+++......+..+++|++|++++|+...
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 98874 67778899999999999999997755556789999999999999544
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.8e-25 Score=218.04 Aligned_cols=353 Identities=19% Similarity=0.143 Sum_probs=147.3
Q ss_pred HHHHHhhccccccccchHHHHHHHHHHHhcccc-------chhhHhhh------------CCCccEEEecCCCCCCHHHH
Q 013423 23 SVQKWRRQRRSLERLPAHLADSLLRHLIRRRLI-------FPSLLEVF------------KHNAEAIELRGENSVDAEWM 83 (443)
Q Consensus 23 ~~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~-------~~~~~~~~------------~~~L~~L~L~~~~~~~~~~~ 83 (443)
.++.+.++.+.++.+|..+.. +..|+.+++. .|..+..+ ..++++|++++|.... ++
T Consensus 12 ~L~~L~l~~n~l~~iP~~i~~--L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~--lp 87 (454)
T 1jl5_A 12 FLQEPLRHSSNLTEMPVEAEN--VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS--LP 87 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC--CC
T ss_pred cchhhhcccCchhhCChhHhc--ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc--CC
Confidence 355666666777777777666 5555554442 22211110 0135777777764221 11
Q ss_pred HHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCC-CCCcEEEcccccCCHHHHHHhcC
Q 013423 84 AYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI-STLEKLWLSETGLTADGIALLSS 162 (443)
Q Consensus 84 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~ 162 (443)
. ..++|++|++++|. ++. .+ ..+++|++|++++| .+++ +... ++|++|++++|.+.+. | .++.
T Consensus 88 ~---~~~~L~~L~l~~n~-l~~-lp---~~~~~L~~L~l~~n-~l~~-----l~~~~~~L~~L~L~~n~l~~l-p-~~~~ 151 (454)
T 1jl5_A 88 E---LPPHLESLVASCNS-LTE-LP---ELPQSLKSLLVDNN-NLKA-----LSDLPPLLEYLGVSNNQLEKL-P-ELQN 151 (454)
T ss_dssp S---CCTTCSEEECCSSC-CSS-CC---CCCTTCCEEECCSS-CCSC-----CCSCCTTCCEEECCSSCCSSC-C-CCTT
T ss_pred C---CcCCCCEEEccCCc-CCc-cc---cccCCCcEEECCCC-ccCc-----ccCCCCCCCEEECcCCCCCCC-c-ccCC
Confidence 1 13567777777765 443 11 12356666666666 4442 1112 4666666666666652 3 4666
Q ss_pred CCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCC-CCCCCEEecccc
Q 013423 163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNLSFI 241 (443)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~L~~L~l~~~ 241 (443)
+++|++|++++|.+++. +. ..++|++|++++|.+++ +| .++.+++|+.|++++|.+++++. .++|+.|++++|
T Consensus 152 l~~L~~L~l~~N~l~~l-p~---~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n 225 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN 225 (454)
T ss_dssp CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS
T ss_pred CCCCCEEECCCCcCccc-CC---CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCC
Confidence 66666666666665542 21 12466666666666654 33 45666666666666666665442 235666666666
Q ss_pred cccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHh----------------
Q 013423 242 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL---------------- 305 (443)
Q Consensus 242 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l---------------- 305 (443)
.+.. +| .+..+++|++|++++|.+++ .|. .+++|+.|++++|++++. |...
T Consensus 226 ~l~~-----lp---~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l-~~~~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 226 ILEE-----LP---ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PELPQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CCSS-----CC---CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSEE
T ss_pred cCCc-----cc---ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccccc-CcccCcCCEEECcCCccCcc
Confidence 5542 33 24455556666666655554 221 124444444444444321 1100
Q ss_pred -cCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCCCCCC
Q 013423 306 -SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPS 384 (443)
Q Consensus 306 -~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~ 384 (443)
.-.++|+.|++++|++++.. . -.++|++|++++|+. ++ +. ...+.++.. . +.+|.+.+ +|.
T Consensus 293 ~~~~~~L~~L~l~~N~l~~i~--~--~~~~L~~L~Ls~N~l-~~--lp---~~~~~L~~L-~------L~~N~l~~-lp~ 354 (454)
T 1jl5_A 293 SELPPNLYYLNASSNEIRSLC--D--LPPSLEELNVSNNKL-IE--LP---ALPPRLERL-I------ASFNHLAE-VPE 354 (454)
T ss_dssp SCCCTTCCEEECCSSCCSEEC--C--CCTTCCEEECCSSCC-SC--CC---CCCTTCCEE-E------CCSSCCSC-CCC
T ss_pred cCcCCcCCEEECcCCcCCccc--C--CcCcCCEEECCCCcc-cc--cc---ccCCcCCEE-E------CCCCcccc-ccc
Confidence 00134444444444444321 0 013666666666653 21 11 112333322 1 23555553 454
Q ss_pred chhhhhhh---hhhcCC--CCCCChhhHHhhhhh-------------cHHHHHHhhcccccc--cCCCCCcccc
Q 013423 385 RTSLRASL---VKQKQD--PMPMSHSFLDQRLKY-------------SREELLELQYSSLSL--ARPDDSSTQD 438 (443)
Q Consensus 385 ~~~~l~~L---~n~l~~--~~p~~~~~ld~~~~l-------------~~L~~L~l~~n~~~~--~~p~~~~~~~ 438 (443)
.+.++..| +|.+.+ .+|.+ +..+ ++|+.||+++|.+++ .+|.......
T Consensus 355 ~l~~L~~L~L~~N~l~~l~~ip~~------l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~ 422 (454)
T 1jl5_A 355 LPQNLKQLHVEYNPLREFPDIPES------VEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLR 422 (454)
T ss_dssp CCTTCCEEECCSSCCSSCCCCCTT------CCEEECCC------------------------------------
T ss_pred hhhhccEEECCCCCCCcCCCChHH------HHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhee
Confidence 33344444 666666 56665 3344 789999999999998 7886654443
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=2.3e-26 Score=234.92 Aligned_cols=142 Identities=17% Similarity=0.156 Sum_probs=105.2
Q ss_pred ccccccccchHHHHHHHHHHHhcccc-------chhhHhhhCCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCC
Q 013423 30 QRRSLERLPAHLADSLLRHLIRRRLI-------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRR 102 (443)
Q Consensus 30 ~~~~l~~lp~~l~~~~l~~L~~~~~~-------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 102 (443)
+...+..+|..++. .++.+++. .+..|..++ +|++|+|++|. +..--+.+|..+++|++|+|++|+
T Consensus 39 ~~~~l~~vP~~lp~----~~~~LdLs~N~i~~l~~~~f~~l~-~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~- 111 (635)
T 4g8a_A 39 MELNFYKIPDNLPF----STKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP- 111 (635)
T ss_dssp TTSCCSSCCSSSCT----TCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-
T ss_pred CCCCcCccCCCCCc----CCCEEEeeCCCCCCCCHHHHhCCC-CCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-
Confidence 44678888877654 23334332 334455544 79999999985 333333568889999999999998
Q ss_pred CChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHH-HHHHhcCCCCCCEEEecCCCCChh
Q 013423 103 VTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDL 179 (443)
Q Consensus 103 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~ 179 (443)
++......|.++++|++|++++| .++......|+.+++|++|++++|.+... .+..++.+++|++|++++|.+.+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 77766677889999999999998 67765455688899999999999988653 356777889999999988877543
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=8.2e-25 Score=213.40 Aligned_cols=223 Identities=21% Similarity=0.233 Sum_probs=147.6
Q ss_pred CCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEE
Q 013423 115 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 194 (443)
Q Consensus 115 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 194 (443)
+++++|++++| .++......|..+++|++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|+
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 34555555554 34433334445555555555555555554444555555555555555555544334455555555555
Q ss_pred ecCCCCCchhhHhhcCCCCCCEEEcCCCC-CCC-----CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEc
Q 013423 195 LWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTK-----LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNL 268 (443)
Q Consensus 195 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-l~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l 268 (443)
+++|.+....+..|..+++|+.|++++|. +.. +..+++|+.|++++|.+.. +| .+..+++|+.|++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-----~~---~~~~l~~L~~L~L 214 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-----IP---NLTPLIKLDELDL 214 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-----CC---CCTTCSSCCEEEC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-----cc---ccCCCcccCEEEC
Confidence 55555554444445555555555555532 221 4445566666666665543 22 3566788999999
Q ss_pred CCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCC
Q 013423 269 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 346 (443)
Q Consensus 269 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l 346 (443)
++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|+..
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 999999887888999999999999999998888888889999999999999999887777888899999999998753
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1.1e-24 Score=213.24 Aligned_cols=222 Identities=19% Similarity=0.216 Sum_probs=158.5
Q ss_pred CCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEE
Q 013423 115 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 194 (443)
Q Consensus 115 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 194 (443)
+++++|++++| .++...+..|..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 45666666665 45544444555666666666666666655555566666666666666666655444556666666666
Q ss_pred ecCCCCCchhhHhhcCCCCCCEEEcCCC-CCCC-----CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEc
Q 013423 195 LWGSQVSNRGAAVLKMFPRLSFLNLAWT-GVTK-----LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNL 268 (443)
Q Consensus 195 l~~~~l~~~~~~~l~~l~~L~~L~l~~~-~l~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l 268 (443)
+++|.+....+..|..+++|+.|++++| .+.. +..+++|+.|++++|.+.+ + +.+..+++|+.|++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-----~---~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-----M---PNLTPLVGLEELEM 225 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-----C---CCCTTCTTCCEEEC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-----c---ccccccccccEEEC
Confidence 6666665444445666666666666653 2222 4456667777777766654 2 23567789999999
Q ss_pred CCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCC
Q 013423 269 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 345 (443)
Q Consensus 269 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~ 345 (443)
++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|+.
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 99999998888899999999999999999988888889999999999999999988777788889999999999874
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=2.6e-25 Score=225.42 Aligned_cols=207 Identities=15% Similarity=0.107 Sum_probs=125.8
Q ss_pred hHhhcCCCCCCEEEcCCCCCCC------CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCC--------
Q 013423 205 AAVLKMFPRLSFLNLAWTGVTK------LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-------- 270 (443)
Q Consensus 205 ~~~l~~l~~L~~L~l~~~~l~~------l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~-------- 270 (443)
+..+..+++|+.|++++|.+.. +..+++|+.|++.++ +. ...++ .....+++|++|++++
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~---~~~l~--~~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IG---DRGLE--VLAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH---HHHHH--HHHHHCTTCCEEEEECCCCSSTTS
T ss_pred HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cC---HHHHH--HHHHhCCCCCEEEeecCccccccc
Confidence 3334445556666666655432 345566666666522 11 11233 3345677788888883
Q ss_pred ---CCCCchhhhc-ccCCCCCCEEEeeCCCCChHHHHHhcC-CCCCCEEEec----CcccCch-----hhhhcCCCCCCC
Q 013423 271 ---TQVSDATLFP-LSTFKELIHLSLRNASLTDVSLHQLSS-LSKLTNLSIR----DAVLTNS-----GLGSFKPPRSLK 336 (443)
Q Consensus 271 ---~~l~~~~~~~-l~~~~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~L~l~----~n~i~~~-----~~~~l~~~~~L~ 336 (443)
+.+++..... ...+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++. .+..+..+++|+
T Consensus 360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 4666554444 345788888888888888777777665 7888888886 5667763 122344577888
Q ss_pred EEeccCCC-CCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCC-CCCCchhhhhhh------hhhcCCCCCCChhhHH
Q 013423 337 LLDLHGGW-LLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNG-PSPSRTSLRASL------VKQKQDPMPMSHSFLD 408 (443)
Q Consensus 337 ~L~l~~n~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~-~~p~~~~~l~~L------~n~l~~~~p~~~~~ld 408 (443)
+|+++.|. .+++..+..+...+++++.. . +.+|.+++ .++..+..+++| +|.+++... ..
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L-~------L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~ 507 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWM-L------LGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI-----AA 507 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEE-E------ECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH-----HH
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEe-e------ccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH-----HH
Confidence 88887655 37788888887777877765 2 23555553 233333444444 333322111 11
Q ss_pred hhhhhcHHHHHHhhccccccc
Q 013423 409 QRLKYSREELLELQYSSLSLA 429 (443)
Q Consensus 409 ~~~~l~~L~~L~l~~n~~~~~ 429 (443)
....+++|+.|++++|+++..
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhcCccCeeECcCCcCCHH
Confidence 244689999999999998874
No 52
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=9.5e-24 Score=202.35 Aligned_cols=241 Identities=17% Similarity=0.164 Sum_probs=132.9
Q ss_pred HHHHhcCCCCCcEEeecCCCCCChHHHHh----ccCCCCCcEEecCCCC--CCCHHHHH-------HhhCCCCCcEEEcc
Q 013423 82 WMAYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRCV--KVTDAGMK-------HLLSISTLEKLWLS 148 (443)
Q Consensus 82 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~--~l~~~~~~-------~~~~l~~L~~L~l~ 148 (443)
+...+..+++|++|++++|. ++...... +.++++|++|++++|. .+++..+. .+..+++|++|+++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 33455667778888888776 66655444 4467778888777752 22222122 23567777777777
Q ss_pred cccCCH----HHHHHhcCCCCCCEEEecCCCCChhhHHhcc----CC---------CCccEEEecCCCCCc-hhh---Hh
Q 013423 149 ETGLTA----DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ----VL---------TKLEYLDLWGSQVSN-RGA---AV 207 (443)
Q Consensus 149 ~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~----~l---------~~L~~L~l~~~~l~~-~~~---~~ 207 (443)
+|.+.. ..+..+..+++|++|++++|.++...+..+. .+ ++|++|++++|.++. ..+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 777766 3455666777777777777777644333332 22 677777777777652 233 34
Q ss_pred hcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHH-HhccCCCCCEEEcCCCCCC----chhhhccc
Q 013423 208 LKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLT-ALQNLNHLERLNLEQTQVS----DATLFPLS 282 (443)
Q Consensus 208 l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~~~~~~L~~L~l~~~~l~----~~~~~~l~ 282 (443)
+..+++|+.|++++|.+.. .+...+. + .+..+++|+.|++++|.++ ...+..+.
T Consensus 183 l~~~~~L~~L~L~~n~l~~-------------------~g~~~l~--~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRP-------------------EGIEHLL--LEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp HHHCTTCCEEECCSSCCCH-------------------HHHHHHH--HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred HHhCCCcCEEECcCCCCCH-------------------hHHHHHH--HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 5566666666666665541 0000011 2 3444555555555555553 22334445
Q ss_pred CCCCCCEEEeeCCCCChH----HHHHhc--CCCCCCEEEecCcccCch----hhhhc-CCCCCCCEEeccCCC
Q 013423 283 TFKELIHLSLRNASLTDV----SLHQLS--SLSKLTNLSIRDAVLTNS----GLGSF-KPPRSLKLLDLHGGW 344 (443)
Q Consensus 283 ~~~~L~~L~l~~n~i~~~----~~~~l~--~l~~L~~L~l~~n~i~~~----~~~~l-~~~~~L~~L~l~~n~ 344 (443)
.+++|+.|++++|.+++. ++..+. .+++|++|++++|.+++. .+..+ ..+++|++|++++|+
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 555555555555555544 233332 255555555555555552 23333 234556666666655
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=7.6e-25 Score=201.00 Aligned_cols=207 Identities=20% Similarity=0.270 Sum_probs=125.5
Q ss_pred CCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCC-CChhhHHhccCCCCccEE
Q 013423 115 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLP-VTDLVLRSLQVLTKLEYL 193 (443)
Q Consensus 115 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L 193 (443)
++|++|++++| .++......|..+++|++|++++|.++...+..+..+++|++|++++|. +....+..+..+++|++|
T Consensus 32 ~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 34444444444 3333322334444444444444444444333444444445555554443 333333344444555555
Q ss_pred EecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCC
Q 013423 194 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV 273 (443)
Q Consensus 194 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l 273 (443)
++++|.+.+..+..+..+++|+.|++++|.+..++ + ..+..+++|++|++++|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------------~--~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-----------------------D--DTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------------------T--TTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-----------------------H--hHhccCCCccEEECCCCcc
Confidence 55555444433444444444444444444433221 1 3356677888888888888
Q ss_pred CchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCC
Q 013423 274 SDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 347 (443)
Q Consensus 274 ~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~ 347 (443)
++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+...
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 87666667888888888888888887777788888889999999988888877778888889999999887543
No 54
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1.4e-23 Score=197.34 Aligned_cols=290 Identities=17% Similarity=0.195 Sum_probs=156.9
Q ss_pred ccccccchHHHHHHHHHHHhcccc----chhhHhhh---CCCccEEEecCCCCCCHHHHHHhcCC--CCCcEEeecCCCC
Q 013423 32 RSLERLPAHLADSLLRHLIRRRLI----FPSLLEVF---KHNAEAIELRGENSVDAEWMAYLGAF--RYLRSLNVADCRR 102 (443)
Q Consensus 32 ~~l~~lp~~l~~~~l~~L~~~~~~----~~~~~~~~---~~~L~~L~L~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~ 102 (443)
..+..+|..+-..++..|...+.. ....+... +..++.++++++.. .. ..+..+ ++++.|++.+|.
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~-~~---~~~~~~~~~~l~~L~l~~n~- 81 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL-HP---DVTGRLLSQGVIAFRCPRSF- 81 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC-CH---HHHHHHHHTTCSEEECTTCE-
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC-CH---HHHHhhhhccceEEEcCCcc-
Confidence 557778887776555544333221 11111111 23356666666542 22 223333 566666666654
Q ss_pred CChHHHHhccCCCCCcEEecCCCCCCCHH-HHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCC-CCChh-
Q 013423 103 VTSSALWALTGMTCLKELDLSRCVKVTDA-GMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGL-PVTDL- 179 (443)
Q Consensus 103 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~- 179 (443)
++... ..+.++++|++|++++| .+++. .+..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++.
T Consensus 82 l~~~~-~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~ 159 (336)
T 2ast_B 82 MDQPL-AEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159 (336)
T ss_dssp ECSCC-CSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH
T ss_pred ccccc-hhhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHH
Confidence 33321 12334555666666555 34433 2333445555555555555555544444555555555555554 34432
Q ss_pred hHHhccCCCCccEEEecCC-CCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhc
Q 013423 180 VLRSLQVLTKLEYLDLWGS-QVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQ 258 (443)
Q Consensus 180 ~~~~l~~l~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 258 (443)
.+..+..+++|++|++++| .+++. .++ ..+.
T Consensus 160 l~~~~~~~~~L~~L~l~~~~~l~~~----------------------------------------------~~~--~~~~ 191 (336)
T 2ast_B 160 LQTLLSSCSRLDELNLSWCFDFTEK----------------------------------------------HVQ--VAVA 191 (336)
T ss_dssp HHHHHHHCTTCCEEECCCCTTCCHH----------------------------------------------HHH--HHHH
T ss_pred HHHHHhcCCCCCEEcCCCCCCcChH----------------------------------------------HHH--HHHH
Confidence 2222344444444444444 33322 122 3344
Q ss_pred cCC-CCCEEEcCCC--CCC-chhhhcccCCCCCCEEEeeCCC-CChHHHHHhcCCCCCCEEEecCc-ccCchhhhhcCCC
Q 013423 259 NLN-HLERLNLEQT--QVS-DATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSLSKLTNLSIRDA-VLTNSGLGSFKPP 332 (443)
Q Consensus 259 ~~~-~L~~L~l~~~--~l~-~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~l~~~ 332 (443)
.++ +|++|++++| .++ +..+..+..+++|+.|++++|. +++..+..+..+++|++|++++| .+++.....+..+
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 455 5666666655 344 2233444556666666666666 55555556666777777777777 3555544556677
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCCCCCCchhh
Q 013423 333 RSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSL 388 (443)
Q Consensus 333 ~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~~~~ 388 (443)
++|++|++++| +++..+..+...+|.+++ .+|.+++..|.+++.
T Consensus 272 ~~L~~L~l~~~--i~~~~~~~l~~~l~~L~l----------~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 272 PTLKTLQVFGI--VPDGTLQLLKEALPHLQI----------NCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCEEECTTS--SCTTCHHHHHHHSTTSEE----------SCCCSCCTTCSSCSS
T ss_pred CCCCEEeccCc--cCHHHHHHHHhhCcceEE----------ecccCccccCCcccc
Confidence 88888888888 777777777777888774 377787777776654
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=2e-24 Score=218.96 Aligned_cols=296 Identities=15% Similarity=0.128 Sum_probs=210.1
Q ss_pred hhhHhhhCCCccEEEecCCCCC-------------CH-HHHHHhcCCCCCcEEeecCCCCCChHHHHhccC-CCC-CcEE
Q 013423 57 PSLLEVFKHNAEAIELRGENSV-------------DA-EWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTC-LKEL 120 (443)
Q Consensus 57 ~~~~~~~~~~L~~L~L~~~~~~-------------~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~-~~~-L~~L 120 (443)
+..+..++ +++.|+++++... .. .+......+++|++|++++|. +++.....+.. ++. |++|
T Consensus 66 ~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 66 DRLSRRFP-NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHHHHCT-TCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEE
T ss_pred HHHHHhCC-CCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEE
Confidence 33445555 6999999886421 11 233344479999999999997 88877777765 455 9999
Q ss_pred ecCCCCCCCHHHHHHh-hCCCCCcEEEcccccCCHH----HHHHhcCCCCCCEEEecCCCCC----hhhHHhccCCCCcc
Q 013423 121 DLSRCVKVTDAGMKHL-LSISTLEKLWLSETGLTAD----GIALLSSLQNLSVLDLGGLPVT----DLVLRSLQVLTKLE 191 (443)
Q Consensus 121 ~l~~~~~l~~~~~~~~-~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~ 191 (443)
++++|..++......+ ..+++|++|++++|.+++. .+.....+++|++|+++++.++ ...+..+..+++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 9999865555545444 3899999999999987543 3334557899999999999886 33455567899999
Q ss_pred EEEecCCCCCchhhHhhcCCCCCCEEEcCCCCC--------CCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCC
Q 013423 192 YLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV--------TKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHL 263 (443)
Q Consensus 192 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l--------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L 263 (443)
+|++++|.+.+ ++..+..+++|+.|+++.... ..+..+++|+.+.++++... .+| ..+..+++|
T Consensus 224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~l~--~~~~~~~~L 295 (592)
T 3ogk_B 224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-----EMP--ILFPFAAQI 295 (592)
T ss_dssp EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-----TGG--GGGGGGGGC
T ss_pred EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-----HHH--HHHhhcCCC
Confidence 99999998874 678888899999999974321 23667788888888775322 245 456677888
Q ss_pred CEEEcCCCCCCchhhh-cccCCCCCCEEEeeCCCCChH-HHHHhcCCCCCCEEEec-----------CcccCchhhhhcC
Q 013423 264 ERLNLEQTQVSDATLF-PLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIR-----------DAVLTNSGLGSFK 330 (443)
Q Consensus 264 ~~L~l~~~~l~~~~~~-~l~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~-----------~n~i~~~~~~~l~ 330 (443)
++|++++|.+++.... .+..+++|+.|+++ +.+++. .+.....+++|++|+++ .+.+++.+...+.
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 8888888887765543 35678888888888 444443 33344567888888888 3567766554433
Q ss_pred -CCCCCCEEeccCCCCCCHHHHHHHHHhCCCceee
Q 013423 331 -PPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW 364 (443)
Q Consensus 331 -~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~ 364 (443)
.+++|++|+++.+. +++..+..+...+++++..
T Consensus 375 ~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~L~~L 408 (592)
T 3ogk_B 375 QGCQELEYMAVYVSD-ITNESLESIGTYLKNLCDF 408 (592)
T ss_dssp HHCTTCSEEEEEESC-CCHHHHHHHHHHCCSCCEE
T ss_pred hhCccCeEEEeecCC-ccHHHHHHHHhhCCCCcEE
Confidence 46788888885555 7777777777777776655
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=5.3e-25 Score=204.23 Aligned_cols=230 Identities=19% Similarity=0.195 Sum_probs=149.0
Q ss_pred CCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHH--HHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCC
Q 013423 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAG--MKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS 167 (443)
Q Consensus 90 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 167 (443)
++|++|++++|. ++......+.++++|++|++++| .++... +..+..+++|++|++++|.+... +..+..+++|+
T Consensus 28 ~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCC
T ss_pred CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccC-hhhcCCCCCCC
Confidence 466666666665 54433334556666666666665 444211 22334455566666655555432 22344455555
Q ss_pred EEEecCCCCChhhH-HhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCC
Q 013423 168 VLDLGGLPVTDLVL-RSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGA 246 (443)
Q Consensus 168 ~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~ 246 (443)
+|++++|.+..... ..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.+.
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------------------~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-------------------GLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-------------------TCTTCCEEECTTCEEGGG
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-------------------cCcCCCEEECCCCccccc
Confidence 55555554443321 2344444455555444444433333333 455566666666554421
Q ss_pred chhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhh
Q 013423 247 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 326 (443)
Q Consensus 247 ~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 326 (443)
.+| ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus 166 ---~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 166 ---FLP--DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp ---EEC--SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred ---cch--hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 133 456778899999999999998778889999999999999999987766678899999999999999999888
Q ss_pred hhcCCC-CCCCEEeccCCCCC
Q 013423 327 GSFKPP-RSLKLLDLHGGWLL 346 (443)
Q Consensus 327 ~~l~~~-~~L~~L~l~~n~~l 346 (443)
..+..+ ++|++|++++|+..
T Consensus 241 ~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SSCCCCCTTCCEEECTTCCEE
T ss_pred HHHHhhhccCCEEEccCCCee
Confidence 888877 49999999999853
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=2.1e-24 Score=211.31 Aligned_cols=245 Identities=18% Similarity=0.174 Sum_probs=205.9
Q ss_pred ccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEE
Q 013423 67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLW 146 (443)
Q Consensus 67 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~ 146 (443)
.+.++.++... ..+|..+ .+++++|++++|. ++...+..|.++++|++|++++| .++...+..|..+++|++|+
T Consensus 56 ~~~v~c~~~~l--~~iP~~~--~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 56 FSKVVCTRRGL--SEVPQGI--PSNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SCEEECCSSCC--SSCCSCC--CTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred CcEEEECCCCc--CccCCCC--CCCccEEECcCCc-CceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEE
Confidence 46677766532 2233222 3689999999998 87767778899999999999998 77776667788999999999
Q ss_pred cccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCC-CCCchhhHhhcCCCCCCEEEcCCCCCC
Q 013423 147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS-QVSNRGAAVLKMFPRLSFLNLAWTGVT 225 (443)
Q Consensus 147 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~~l~ 225 (443)
+++|.++...+..+..+++|++|++++|.+.......+..+++|++|++++| .+....+..|.++++|+.|++++|.++
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 9999999877777889999999999999999876678899999999999996 454444456889999999999999988
Q ss_pred CC---CCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHH
Q 013423 226 KL---PNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 302 (443)
Q Consensus 226 ~l---~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~ 302 (443)
.+ ..+++|+.|++++|.+.+. .| ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus 210 ~~~~~~~l~~L~~L~Ls~N~l~~~----~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 210 DMPNLTPLVGLEELEMSGNHFPEI----RP--GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp SCCCCTTCTTCCEEECTTSCCSEE----CG--GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccccccccccccEEECcCCcCccc----Cc--ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 75 4678999999999988753 34 678899999999999999999888889999999999999999998777
Q ss_pred HHhcCCCCCCEEEecCcccCc
Q 013423 303 HQLSSLSKLTNLSIRDAVLTN 323 (443)
Q Consensus 303 ~~l~~l~~L~~L~l~~n~i~~ 323 (443)
..+..+++|+.|++++|.+.-
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEEC
T ss_pred HHhccccCCCEEEccCCCcCC
Confidence 778899999999999997653
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=3.8e-25 Score=206.85 Aligned_cols=223 Identities=17% Similarity=0.108 Sum_probs=117.4
Q ss_pred CCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEE
Q 013423 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169 (443)
Q Consensus 90 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 169 (443)
+++++|++++|. ++. .+..+.++++|++|++++| .++ ..+..++.+++|++|++++|.+.. .|..+..+++|++|
T Consensus 81 ~~l~~L~L~~n~-l~~-lp~~l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVP-LPQ-FPDQAFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSC-CSS-CCSCGGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCCCC-CCGGGGGCTTCCEE
T ss_pred cceeEEEccCCC-chh-cChhhhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCcccc-CcHHHhcCcCCCEE
Confidence 444444444443 331 2222333444444444444 233 112233344444444444444442 23334444444444
Q ss_pred EecCCCCChhhHHh---------ccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEeccc
Q 013423 170 DLGGLPVTDLVLRS---------LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSF 240 (443)
Q Consensus 170 ~l~~~~~~~~~~~~---------l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~ 240 (443)
++++|...+..+.. +..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~------------ 222 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALG------------ 222 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCC------------
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCc------------
Confidence 44444333322222 233666666666666665 45555666666666666665554322
Q ss_pred ccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcc
Q 013423 241 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 320 (443)
Q Consensus 241 ~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 320 (443)
..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.
T Consensus 223 --------------~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 223 --------------PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp --------------GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred --------------hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 234555666666666666666566666666666666666666655566566666666666666666
Q ss_pred cCchhhhhcCCCCCCCEEeccCCC
Q 013423 321 LTNSGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 321 i~~~~~~~l~~~~~L~~L~l~~n~ 344 (443)
+.+..|..+..+++|+.+++..+.
T Consensus 289 ~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 289 NLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TCCCCCGGGGGSCTTCEEECCGGG
T ss_pred chhhccHHHhhccCceEEeCCHHH
Confidence 666666666666666666666543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=2.6e-24 Score=209.87 Aligned_cols=244 Identities=20% Similarity=0.226 Sum_probs=202.4
Q ss_pred ccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEE
Q 013423 67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLW 146 (443)
Q Consensus 67 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~ 146 (443)
.+.++.++... ..+|..+ .++++.|++++|. ++......+.++++|++|++++| .++......|..+++|++|+
T Consensus 45 ~~~v~c~~~~l--~~iP~~~--~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 45 FSKVICVRKNL--REVPDGI--STNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp SCEEECCSCCC--SSCCSCC--CTTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEE
T ss_pred CCEEEeCCCCc--CcCCCCC--CCCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEE
Confidence 45677666532 2233322 3789999999998 77766778889999999999998 67766667788999999999
Q ss_pred cccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCC-CCchhhHhhcCCCCCCEEEcCCCCCC
Q 013423 147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-VSNRGAAVLKMFPRLSFLNLAWTGVT 225 (443)
Q Consensus 147 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~l~ 225 (443)
+++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..|.++++|+.|++++|.++
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 99999988766678899999999999999988766778899999999999864 54444557889999999999999988
Q ss_pred CCC---CCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHH
Q 013423 226 KLP---NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 302 (443)
Q Consensus 226 ~l~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~ 302 (443)
.++ .+++|+.|++++|.+.+. .+ ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus 199 ~~~~~~~l~~L~~L~Ls~N~l~~~----~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 199 EIPNLTPLIKLDELDLSGNHLSAI----RP--GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp SCCCCTTCSSCCEEECTTSCCCEE----CT--TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred cccccCCCcccCEEECCCCccCcc----Ch--hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 754 678899999999987753 23 567889999999999999999888889999999999999999998777
Q ss_pred HHhcCCCCCCEEEecCcccC
Q 013423 303 HQLSSLSKLTNLSIRDAVLT 322 (443)
Q Consensus 303 ~~l~~l~~L~~L~l~~n~i~ 322 (443)
..+..+++|+.|++++|.+.
T Consensus 273 ~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTSSCTTCCEEECCSSCEE
T ss_pred hHhccccCCCEEEcCCCCcc
Confidence 78889999999999999865
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=5.3e-24 Score=215.86 Aligned_cols=131 Identities=22% Similarity=0.282 Sum_probs=68.2
Q ss_pred cCCCCCcEEeecCCCCCChHHHHhcc-CCCCCcEEecCCCCCCCHHHHHHhh-CCCCCcEEEcccccCCHHHHHHhc---
Q 013423 87 GAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTADGIALLS--- 161 (443)
Q Consensus 87 ~~~~~L~~L~L~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~--- 161 (443)
..+++|++|++++|. +++..+..+. .+++|++|++++|..+++.....+. .+++|++|++++|.+++..+..+.
T Consensus 102 ~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 456666677776665 6655555554 5666677766666445544343333 566666666666655443222222
Q ss_pred -CCCCCCEEEecCCC--CChhhHHh-ccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEE
Q 013423 162 -SLQNLSVLDLGGLP--VTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218 (443)
Q Consensus 162 -~l~~L~~L~l~~~~--~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 218 (443)
.+++|++|+++++. +....... +..+++|++|++++|...+.++..+..+++|+.|+
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 45566666666654 33222222 23456666666665521112333344444444444
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=2.8e-24 Score=199.36 Aligned_cols=231 Identities=21% Similarity=0.255 Sum_probs=170.3
Q ss_pred hCCCccEEEecCCCCCCHHHH-HHhcCCCCCcEEeecCCCCCChHH--HHhccCCCCCcEEecCCCCCCCHHHHHHhhCC
Q 013423 63 FKHNAEAIELRGENSVDAEWM-AYLGAFRYLRSLNVADCRRVTSSA--LWALTGMTCLKELDLSRCVKVTDAGMKHLLSI 139 (443)
Q Consensus 63 ~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l 139 (443)
+++++++|++++|.. . .++ ..+..+++|++|++++|. ++... +..+..+++|++|++++| .++.. +..+..+
T Consensus 26 ~~~~l~~L~L~~n~l-~-~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l-~~~~~~l 100 (306)
T 2z66_A 26 IPSSATRLELESNKL-Q-SLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITM-SSNFLGL 100 (306)
T ss_dssp CCTTCCEEECCSSCC-C-CCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEE-EEEEETC
T ss_pred CCCCCCEEECCCCcc-C-ccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccC-hhhcCCC
Confidence 346899999999964 3 233 346889999999999998 66432 344567999999999998 55542 3347789
Q ss_pred CCCcEEEcccccCCHHHH-HHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCc-hhhHhhcCCCCCCEE
Q 013423 140 STLEKLWLSETGLTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFL 217 (443)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L 217 (443)
++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..+++|+.|
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 999999999999887644 578899999999999999988777778899999999999998875 467778888888888
Q ss_pred EcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCC
Q 013423 218 NLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 297 (443)
Q Consensus 218 ~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i 297 (443)
++++|.++++. | ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 181 ~Ls~n~l~~~~-----------------------~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 181 DLSQCQLEQLS-----------------------P--TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECTTSCCCEEC-----------------------T--TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ECCCCCcCCcC-----------------------H--HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 88888766421 1 2334455666666666666654444556666666666666666
Q ss_pred ChHHHHHhcCCC-CCCEEEecCcccCc
Q 013423 298 TDVSLHQLSSLS-KLTNLSIRDAVLTN 323 (443)
Q Consensus 298 ~~~~~~~l~~l~-~L~~L~l~~n~i~~ 323 (443)
++..+..+..++ +|++|++++|.++.
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cccCHHHHHhhhccCCEEEccCCCeec
Confidence 655555555553 66666666666554
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=2.9e-25 Score=206.94 Aligned_cols=254 Identities=16% Similarity=0.164 Sum_probs=142.6
Q ss_pred ccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEE
Q 013423 67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLW 146 (443)
Q Consensus 67 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~ 146 (443)
++..+++.+. +.......+..+++|++|++++|. ++...+..+.++++|++|++++| .+++.. .+..+++|++|+
T Consensus 12 l~i~~ls~~~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~--~~~~l~~L~~L~ 86 (317)
T 3o53_A 12 YKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLYETL--DLESLSTLRTLD 86 (317)
T ss_dssp EEEESCCTTT-HHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTS-CCEEEE--EETTCTTCCEEE
T ss_pred eeEeeccccc-hhhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCC-cCCcch--hhhhcCCCCEEE
Confidence 4444444442 222233334455566666666665 55545555666666666666666 444321 155666666666
Q ss_pred cccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCC
Q 013423 147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK 226 (443)
Q Consensus 147 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~ 226 (443)
+++|.++... ..++|++|++++|.+.+..+ ..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 87 Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 87 LNNNYVQELL-----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp CCSSEEEEEE-----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred CcCCcccccc-----CCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 6666554321 23556666666665555422 234555666666655554444444455555555555554432
Q ss_pred CCCCCCCCEEecccccccCCchhhhhhHHH-hccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHh
Q 013423 227 LPNISSLECLNLSFIQQVGAETDLVLSLTA-LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL 305 (443)
Q Consensus 227 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l 305 (443)
+. + .. ...+++|++|++++|.+++. .....+++|++|++++|++++..+ .+
T Consensus 159 ~~-----------------------~--~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~-~~ 210 (317)
T 3o53_A 159 VN-----------------------F--AELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGP-EF 210 (317)
T ss_dssp EE-----------------------G--GGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECG-GG
T ss_pred cc-----------------------H--HHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchh-hh
Confidence 11 1 11 23456777777777777653 223346777777777777765433 36
Q ss_pred cCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCcee
Q 013423 306 SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEV 363 (443)
Q Consensus 306 ~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~ 363 (443)
..+++|++|++++|++++. +..+..+++|+.|++++|+ ++...+..+...++.++.
T Consensus 211 ~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp GGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHH
T ss_pred cccCcccEEECcCCcccch-hhHhhcCCCCCEEEccCCC-ccCcCHHHHHhccccceE
Confidence 6677777777777777754 4456666777777777777 443444455555554443
No 63
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.5e-23 Score=199.47 Aligned_cols=255 Identities=18% Similarity=0.134 Sum_probs=167.7
Q ss_pred ccCCCCCcEEecCCCCCCCHHHHHH----hhCCCCCcEEEcccccCC---HHHHH-------HhcCCCCCCEEEecCCCC
Q 013423 111 LTGMTCLKELDLSRCVKVTDAGMKH----LLSISTLEKLWLSETGLT---ADGIA-------LLSSLQNLSVLDLGGLPV 176 (443)
Q Consensus 111 l~~~~~L~~L~l~~~~~l~~~~~~~----~~~l~~L~~L~l~~~~~~---~~~~~-------~l~~l~~L~~L~l~~~~~ 176 (443)
+..+++|++|++++| .++...+.. +..+++|++|++++|.+. +..|. .+..+++|++|++++|.+
T Consensus 28 l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 346778888888887 677665554 446788888888876432 22222 235677777777777777
Q ss_pred Ch----hhHHhccCCCCccEEEecCCCCCchhhHhhcCC-CCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhh
Q 013423 177 TD----LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF-PRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLV 251 (443)
Q Consensus 177 ~~----~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l-~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 251 (443)
.. ..+..+..+++|++|++++|.+.+..+..+... ..+....+. ...++|+.|++++|.+.......+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~-------~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA-------KNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHH-------HTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhc-------ccCCCCcEEECCCCCCCcHHHHHH
Confidence 66 345566677777777777777654433333321 000000000 000344455555554432211222
Q ss_pred hhHHHhccCCCCCEEEcCCCCCCch-----hhhcccCCCCCCEEEeeCCCCC----hHHHHHhcCCCCCCEEEecCcccC
Q 013423 252 LSLTALQNLNHLERLNLEQTQVSDA-----TLFPLSTFKELIHLSLRNASLT----DVSLHQLSSLSKLTNLSIRDAVLT 322 (443)
Q Consensus 252 ~~l~~~~~~~~L~~L~l~~~~l~~~-----~~~~l~~~~~L~~L~l~~n~i~----~~~~~~l~~l~~L~~L~l~~n~i~ 322 (443)
. ..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.++ ..++..+..+++|++|++++|.++
T Consensus 180 ~--~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 180 A--KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp H--HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred H--HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 2 4677889999999999999853 2336788999999999999997 456778889999999999999999
Q ss_pred chhh----hhc--CCCCCCCEEeccCCCCCCHH----HHHHHHHhCCCceeeeeecccCCCCCCCCCCCCC
Q 013423 323 NSGL----GSF--KPPRSLKLLDLHGGWLLTED----AILQFCKMHPRIEVWHELSVICPSDQIGSNGPSP 383 (443)
Q Consensus 323 ~~~~----~~l--~~~~~L~~L~l~~n~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p 383 (443)
+.+. ..+ ..+++|++|++++|. +++. .+..+...+|.++.. . +.+|.+++..+
T Consensus 258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L-~------l~~N~l~~~~~ 320 (386)
T 2ca6_A 258 ARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFL-E------LNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEE-E------CTTSBSCTTSH
T ss_pred hhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEE-E------ccCCcCCcchh
Confidence 8743 344 237899999999999 7774 444454667887765 2 46788876553
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=1.6e-23 Score=192.10 Aligned_cols=225 Identities=19% Similarity=0.207 Sum_probs=176.4
Q ss_pred cEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEc
Q 013423 68 EAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWL 147 (443)
Q Consensus 68 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l 147 (443)
++++.+++... .++. ...++|++|++++|. ++......+.++++|++|++++| .++...+..|..+++|++|++
T Consensus 14 ~~~~c~~~~l~--~ip~--~~~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQ--AVPV--GIPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCS--SCCT--TCCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCcc--cCCc--CCCCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeC
Confidence 56777765421 2222 234789999999987 77766667888999999999998 677665667888999999999
Q ss_pred cccc-CCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCC
Q 013423 148 SETG-LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK 226 (443)
Q Consensus 148 ~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~ 226 (443)
++|. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 9997 777667788889999999999999888767778889999999999999886666667788888888888877663
Q ss_pred CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhc
Q 013423 227 LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 306 (443)
Q Consensus 227 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~ 306 (443)
++. ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+.
T Consensus 168 ~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 222 (285)
T 1ozn_A 168 VPE-------------------------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222 (285)
T ss_dssp ECT-------------------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred cCH-------------------------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcc
Confidence 321 2355677888888888888877777788888888888888888877777788
Q ss_pred CCCCCCEEEecCcccCc
Q 013423 307 SLSKLTNLSIRDAVLTN 323 (443)
Q Consensus 307 ~l~~L~~L~l~~n~i~~ 323 (443)
.+++|+.|++++|.+..
T Consensus 223 ~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 223 PLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TCTTCCEEECCSSCEEC
T ss_pred cCcccCEEeccCCCccC
Confidence 88888888888887754
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=1.1e-22 Score=198.49 Aligned_cols=281 Identities=16% Similarity=0.111 Sum_probs=133.7
Q ss_pred CCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEE
Q 013423 91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLD 170 (443)
Q Consensus 91 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 170 (443)
+|++|++++|. ++.. + .++++++|++|++++| .++.. + ....+|++|++++|.+... + .++.+++|++|+
T Consensus 132 ~L~~L~L~~n~-l~~l-p-~~~~l~~L~~L~l~~N-~l~~l-p---~~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 132 LLEYLGVSNNQ-LEKL-P-ELQNSSFLKIIDVDNN-SLKKL-P---DLPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIY 201 (454)
T ss_dssp TCCEEECCSSC-CSSC-C-CCTTCTTCCEEECCSS-CCSCC-C---CCCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEE
T ss_pred CCCEEECcCCC-CCCC-c-ccCCCCCCCEEECCCC-cCccc-C---CCcccccEEECcCCcCCcC-c-cccCCCCCCEEE
Confidence 44444444444 3321 1 3444555555555554 33321 0 0123555555555555442 2 345555555555
Q ss_pred ecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCC-CCCCCEEecccccccCCchh
Q 013423 171 LGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNLSFIQQVGAETD 249 (443)
Q Consensus 171 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~L~~L~l~~~~~~~~~~~ 249 (443)
+++|.+.+. +. ..++|++|++++|.+. .+| .++.+++|+.|++++|.+++++. +++|+.|++++|.+.+
T Consensus 202 l~~N~l~~l-~~---~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~---- 271 (454)
T 1jl5_A 202 ADNNSLKKL-PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD---- 271 (454)
T ss_dssp CCSSCCSSC-CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC----
T ss_pred CCCCcCCcC-CC---CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc----
Confidence 555555442 11 1235666666666555 334 35666777777777776666542 3567777777766553
Q ss_pred hhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCC-CCCCEEEecCcccCchhhhh
Q 013423 250 LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL-SKLTNLSIRDAVLTNSGLGS 328 (443)
Q Consensus 250 ~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~l~~n~i~~~~~~~ 328 (443)
+|. ..++|+.|++++|.+++. +. ..++|+.|++++|.+++. ..+ ++|+.|++++|++++. +..
T Consensus 272 -l~~-----~~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~l-p~~ 335 (454)
T 1jl5_A 272 -LPE-----LPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIEL-PAL 335 (454)
T ss_dssp -CCC-----CCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCC-CCC
T ss_pred -cCc-----ccCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccccc-ccc
Confidence 331 235677777777777651 11 125677777777776642 233 4788888888888764 222
Q ss_pred cCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCC--CCCCchhhh----------------h
Q 013423 329 FKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNG--PSPSRTSLR----------------A 390 (443)
Q Consensus 329 l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~--~~p~~~~~l----------------~ 390 (443)
+++|++|++++|.. +. ++. ..+.++.. . +.+|.+.+ .+|.++..+ +
T Consensus 336 ---~~~L~~L~L~~N~l-~~--lp~---~l~~L~~L-~------L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~ 399 (454)
T 1jl5_A 336 ---PPRLERLIASFNHL-AE--VPE---LPQNLKQL-H------VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLK 399 (454)
T ss_dssp ---CTTCCEEECCSSCC-SC--CCC---CCTTCCEE-E------CCSSCCSSCCCCCTTCCEEECCC-------------
T ss_pred ---CCcCCEEECCCCcc-cc--ccc---hhhhccEE-E------CCCCCCCcCCCChHHHHhhhhcccccccccccCcCC
Confidence 46788888888873 31 111 23334433 1 34666666 566666544 3
Q ss_pred hh---hhhcCC--CCCCChhhHHhhhhhcHHHHHHhhcccccccCCCCCc
Q 013423 391 SL---VKQKQD--PMPMSHSFLDQRLKYSREELLELQYSSLSLARPDDSS 435 (443)
Q Consensus 391 ~L---~n~l~~--~~p~~~~~ld~~~~l~~L~~L~l~~n~~~~~~p~~~~ 435 (443)
.| +|.+++ .+|.+ ++.|++++|.+.+.+|....
T Consensus 400 ~L~ls~N~l~~~~~iP~s------------l~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 400 QLHVETNPLREFPDIPES------------VEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp --------------------------------------------------
T ss_pred EEECCCCcCCccccchhh------------HhheeCcCcccCCccccCHH
Confidence 33 666665 55544 67788899999998765443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=8.8e-24 Score=196.87 Aligned_cols=249 Identities=18% Similarity=0.163 Sum_probs=165.8
Q ss_pred CcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEec
Q 013423 117 LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196 (443)
Q Consensus 117 L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 196 (443)
++..+++.+ .+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 334444444 3333323333445566666666666665555566666666666666666654322 5666666666666
Q ss_pred CCCCCchhhHhhcCCCCCCEEEcCCCCCCCC--CCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCC
Q 013423 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL--PNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 274 (443)
Q Consensus 197 ~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~ 274 (443)
+|.+++.. ..++|+.|++++|.+.++ ..+++|+.|++++|.+.+. .+ ..+..+++|++|++++|.++
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~----~~--~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML----RD--LDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSG----GG--BCTGGGSSEEEEECTTSCCC
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCc----cc--hhhhccCCCCEEECCCCCCC
Confidence 66654321 236677777777766652 2456777888887777642 12 34667899999999999999
Q ss_pred chhhhccc-CCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHH
Q 013423 275 DATLFPLS-TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQ 353 (443)
Q Consensus 275 ~~~~~~l~-~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~ 353 (443)
+..+..+. .+++|++|++++|.+++.. ....+++|++|++++|++++..+ .+..+++|++|++++|+ ++. +..
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~-l~~--l~~ 231 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNK-LVL--IEK 231 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSC-CCE--ECT
T ss_pred cccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCc-ccc--hhh
Confidence 87777764 7899999999999998652 33458999999999999998755 47788999999999998 441 222
Q ss_pred HHHhCCCceeeeeecccCCCCCCCCC-CCCCCchhhhhhh
Q 013423 354 FCKMHPRIEVWHELSVICPSDQIGSN-GPSPSRTSLRASL 392 (443)
Q Consensus 354 ~~~~~~~l~~~~~~~~~~~~~~~~l~-~~~p~~~~~l~~L 392 (443)
....++.++.. .+.+|.+. +.+|.++..++.+
T Consensus 232 ~~~~l~~L~~L-------~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 232 ALRFSQNLEHF-------DLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp TCCCCTTCCEE-------ECTTCCCBHHHHHHHHHTCHHH
T ss_pred HhhcCCCCCEE-------EccCCCccCcCHHHHHhccccc
Confidence 22334444433 14578887 6677777777766
No 67
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.1e-23 Score=196.89 Aligned_cols=225 Identities=16% Similarity=0.136 Sum_probs=173.4
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
.+++.|++++|.. . .++..++.+++|++|++++|. ++ ..+..+.++++|++|++++| .++. .+..+..+++|++
T Consensus 81 ~~l~~L~L~~n~l-~-~lp~~l~~l~~L~~L~L~~n~-l~-~lp~~~~~l~~L~~L~Ls~n-~l~~-lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELRSVPL-P-QFPDQAFRLSHLQHMTIDAAG-LM-ELPDTMQQFAGLETLTLARN-PLRA-LPASIASLNRLRE 154 (328)
T ss_dssp TTCCEEEEESSCC-S-SCCSCGGGGTTCSEEEEESSC-CC-CCCSCGGGGTTCSEEEEESC-CCCC-CCGGGGGCTTCCE
T ss_pred cceeEEEccCCCc-h-hcChhhhhCCCCCEEECCCCC-cc-chhHHHhccCCCCEEECCCC-cccc-CcHHHhcCcCCCE
Confidence 5799999999964 3 566778889999999999998 66 45667889999999999999 6763 3667889999999
Q ss_pred EEcccccCCHHHHHHhc---------CCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCC
Q 013423 145 LWLSETGLTADGIALLS---------SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS 215 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 215 (443)
|++++|.+.+..|..+. .+++|++|++++|.++. .+..+..+++|++|++++|.+.+ ++..+..+++|+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~ 232 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCC
Confidence 99999887766666554 49999999999999985 47789999999999999999984 566788888888
Q ss_pred EEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCC
Q 013423 216 FLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 295 (443)
Q Consensus 216 ~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 295 (443)
.|++++|.+.+. +| ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus 233 ~L~Ls~n~~~~~-----------------------~p--~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 233 ELDLRGCTALRN-----------------------YP--PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp EEECTTCTTCCB-----------------------CC--CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred EEECcCCcchhh-----------------------hH--HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 888888765431 22 33445566666666666666666666666677777777776
Q ss_pred CCChHHHHHhcCCCCCCEEEecCcccC
Q 013423 296 SLTDVSLHQLSSLSKLTNLSIRDAVLT 322 (443)
Q Consensus 296 ~i~~~~~~~l~~l~~L~~L~l~~n~i~ 322 (443)
.+.+.+|..+..+++|+.+++..+.+.
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CchhhccHHHhhccCceEEeCCHHHHH
Confidence 666666666667777777776655444
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=8.4e-23 Score=193.30 Aligned_cols=238 Identities=19% Similarity=0.200 Sum_probs=134.0
Q ss_pred CCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcC
Q 013423 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220 (443)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 220 (443)
+|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 34444444444443333334444444444444444444333344444555555555554443333334455555555555
Q ss_pred CCCCCC------CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeC
Q 013423 221 WTGVTK------LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 294 (443)
Q Consensus 221 ~~~l~~------l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 294 (443)
+|.++. +..+++|+.|++++|...+. ++. ..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~----~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTK----IQR-KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE----ECT-TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccc----cCH-HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 554443 22355666666666532211 211 3466777888888888888877677788888888888888
Q ss_pred CCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcC---CCCCCCEEeccCCCCCCHHHHHHH---HHhCCCceeeeeec
Q 013423 295 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK---PPRSLKLLDLHGGWLLTEDAILQF---CKMHPRIEVWHELS 368 (443)
Q Consensus 295 n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~---~~~~L~~L~l~~n~~l~~~~~~~~---~~~~~~l~~~~~~~ 368 (443)
|.++......+..+++|+.|++++|.+++..+..+. ....++.++++++. +++..+..+ ...++.++.. .
T Consensus 208 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L-~-- 283 (353)
T 2z80_A 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLEL-E-- 283 (353)
T ss_dssp SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEE-E--
T ss_pred CccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEE-E--
Confidence 888765555556678888888888888776544332 35678888888887 666543332 3445555544 1
Q ss_pred ccCCCCCCCCCCCCCCc-hhhhhhh
Q 013423 369 VICPSDQIGSNGPSPSR-TSLRASL 392 (443)
Q Consensus 369 ~~~~~~~~~l~~~~p~~-~~~l~~L 392 (443)
+.+|.+. .+|.. |..+++|
T Consensus 284 ----Ls~N~l~-~i~~~~~~~l~~L 303 (353)
T 2z80_A 284 ----FSRNQLK-SVPDGIFDRLTSL 303 (353)
T ss_dssp ----CCSSCCC-CCCTTTTTTCTTC
T ss_pred ----CCCCCCC-ccCHHHHhcCCCC
Confidence 3466666 35544 3455544
No 69
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=5.2e-23 Score=195.32 Aligned_cols=255 Identities=18% Similarity=0.191 Sum_probs=158.3
Q ss_pred EEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHH----HhccCCC-CCcEEecCCCCCCCHHHHHHhhCC-----
Q 013423 70 IELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSAL----WALTGMT-CLKELDLSRCVKVTDAGMKHLLSI----- 139 (443)
Q Consensus 70 L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~l~~~~~~~~~~l----- 139 (443)
.+++++. +++.++..+...++|++|++++|. +++... ..+.+++ +|++|++++| .+++..+..+..+
T Consensus 3 ~~ls~n~-~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHP-GSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCT-TCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSC
T ss_pred ccccccc-chHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccC
Confidence 5667764 555666666666668888888887 666555 5666777 7888888887 6665545555432
Q ss_pred CCCcEEEcccccCCHHHHHH----hcCC-CCCCEEEecCCCCChhhHHhc----cC-CCCccEEEecCCCCCch----hh
Q 013423 140 STLEKLWLSETGLTADGIAL----LSSL-QNLSVLDLGGLPVTDLVLRSL----QV-LTKLEYLDLWGSQVSNR----GA 205 (443)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~l~~~----~~ 205 (443)
++|++|++++|.++...+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++. ++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 78888888888776654443 3344 677777777777765544333 23 35777777777776642 23
Q ss_pred HhhcCCC-CCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccC-CCCCEEEcCCCCCCchh----hh
Q 013423 206 AVLKMFP-RLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNL-NHLERLNLEQTQVSDAT----LF 279 (443)
Q Consensus 206 ~~l~~l~-~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~-~~L~~L~l~~~~l~~~~----~~ 279 (443)
..+...+ +|+.|++++|.++ +.....+. ..+..+ ++|++|++++|.+++.. +.
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~-------------------~~~~~~l~--~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLA-------------------SKNCAELA--KFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGG-------------------GSCHHHHH--HHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred HHHhcCCccccEeeecCCCCc-------------------hhhHHHHH--HHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 3334443 5555555555444 32222233 345555 37777777777776632 22
Q ss_pred cccC-CCCCCEEEeeCCCCChHHH----HHhcCCCCCCEEEecCcccCchhh-------hhcCCCCCCCEEeccCCCCCC
Q 013423 280 PLST-FKELIHLSLRNASLTDVSL----HQLSSLSKLTNLSIRDAVLTNSGL-------GSFKPPRSLKLLDLHGGWLLT 347 (443)
Q Consensus 280 ~l~~-~~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~l~~n~i~~~~~-------~~l~~~~~L~~L~l~~n~~l~ 347 (443)
.+.. .++|++|++++|.+++..+ ..+..+++|++|++++|.+.+... ..+..+++|++|++++|+ +.
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~ 297 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IH 297 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CC
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc-CC
Confidence 3333 3577888888877766433 334566778888888887433322 234456778888888888 44
Q ss_pred HH
Q 013423 348 ED 349 (443)
Q Consensus 348 ~~ 349 (443)
+.
T Consensus 298 ~~ 299 (362)
T 3goz_A 298 PS 299 (362)
T ss_dssp GG
T ss_pred Cc
Confidence 43
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=1.9e-24 Score=200.93 Aligned_cols=203 Identities=24% Similarity=0.219 Sum_probs=101.9
Q ss_pred CCCCCcEEecCCCCCCCHHHHHHh--hCCCCCcEEEcccccCCHHHHHHhcCC-----CCCCEEEecCCCCChhhHHhcc
Q 013423 113 GMTCLKELDLSRCVKVTDAGMKHL--LSISTLEKLWLSETGLTADGIALLSSL-----QNLSVLDLGGLPVTDLVLRSLQ 185 (443)
Q Consensus 113 ~~~~L~~L~l~~~~~l~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~l~ 185 (443)
++++|++|++++| .+++..+..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..++
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 3455555555554 3332222222 4455555555555555443 3333222 5566666666655555445555
Q ss_pred CCCCccEEEecCCCCCch--hhHhh--cCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCC
Q 013423 186 VLTKLEYLDLWGSQVSNR--GAAVL--KMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLN 261 (443)
Q Consensus 186 ~l~~L~~L~l~~~~l~~~--~~~~l--~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~ 261 (443)
.+++|++|++++|.+.+. .+..+ ..+++|+.|++++|.++.++ .++. ..+..++
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------~~~~-~~~~~l~ 228 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS---------------------GVCS-ALAAARV 228 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH---------------------HHHH-HHHHTTC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH---------------------HHHH-HHHhcCC
Confidence 666666666666655433 23333 45666666666666544211 0110 2233455
Q ss_pred CCCEEEcCCCCCCchhh-hcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEec
Q 013423 262 HLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 340 (443)
Q Consensus 262 ~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l 340 (443)
+|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. +. +..+++|++|++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 55555555555555332 22334555666666666555 2333332 5566666666666555 32 455566666666
Q ss_pred cCCC
Q 013423 341 HGGW 344 (443)
Q Consensus 341 ~~n~ 344 (443)
++|+
T Consensus 304 ~~N~ 307 (312)
T 1wwl_A 304 KGNP 307 (312)
T ss_dssp TTCT
T ss_pred cCCC
Confidence 6665
No 71
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=7.8e-22 Score=185.38 Aligned_cols=234 Identities=21% Similarity=0.213 Sum_probs=179.6
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChH-HHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCc
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSS-ALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~ 143 (443)
++++.|+++++.. .... ..+..+++|++|++++|. +++. .+..+.++++|++|++++| .+++..+..+..+++|+
T Consensus 70 ~~l~~L~l~~n~l-~~~~-~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCPRSFM-DQPL-AEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp TTCSEEECTTCEE-CSCC-CSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCS
T ss_pred ccceEEEcCCccc-cccc-hhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCC
Confidence 5799999999853 3222 235678999999999998 7765 5567789999999999999 78888888999999999
Q ss_pred EEEcccc-cCCHH-HHHHhcCCCCCCEEEecCC-CCChh-hHHhccCCC-CccEEEecCC--CCC-chhhHhhcCCCCCC
Q 013423 144 KLWLSET-GLTAD-GIALLSSLQNLSVLDLGGL-PVTDL-VLRSLQVLT-KLEYLDLWGS--QVS-NRGAAVLKMFPRLS 215 (443)
Q Consensus 144 ~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~--~l~-~~~~~~l~~l~~L~ 215 (443)
+|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++++| .++ +.++..+..+++|+
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 9999999 78874 4556788999999999999 88875 466678899 9999999999 555 45566667777777
Q ss_pred EEEcCCCC-CCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCC-CCCchhhhcccCCCCCCEEEee
Q 013423 216 FLNLAWTG-VTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQT-QVSDATLFPLSTFKELIHLSLR 293 (443)
Q Consensus 216 ~L~l~~~~-l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l~ 293 (443)
.|++++|. ++ + ..+ ..+..+++|++|++++| .+.+.....++.+++|+.|+++
T Consensus 226 ~L~l~~~~~l~-------------------~----~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 226 HLDLSDSVMLK-------------------N----DCF--QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp EEECTTCTTCC-------------------G----GGG--GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred EEeCCCCCcCC-------------------H----HHH--HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 77777665 22 1 122 35567789999999998 5665555567888999999999
Q ss_pred CCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcC
Q 013423 294 NASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK 330 (443)
Q Consensus 294 ~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~ 330 (443)
+| +++.....+. .+++.|++++|++++..+..+.
T Consensus 281 ~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 281 GI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred Cc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 98 7665444443 2355566888888887766544
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=1.4e-24 Score=201.71 Aligned_cols=199 Identities=22% Similarity=0.195 Sum_probs=120.1
Q ss_pred CCCCCEEEecCCCCChhhHHhc--cCCCCccEEEecCCCCCchhhHhhcCC-----CCCCEEEcCCCCCCC-----CCCC
Q 013423 163 LQNLSVLDLGGLPVTDLVLRSL--QVLTKLEYLDLWGSQVSNRGAAVLKMF-----PRLSFLNLAWTGVTK-----LPNI 230 (443)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~~~l~~-----l~~~ 230 (443)
+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+ +..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4444444444444443323322 4444444444444444433 3333322 445555555554443 2345
Q ss_pred CCCCEEecccccccCCchhhhhhHHHh--ccCCCCCEEEcCCCCCCch--hh-hcccCCCCCCEEEeeCCCCChHHH-HH
Q 013423 231 SSLECLNLSFIQQVGAETDLVLSLTAL--QNLNHLERLNLEQTQVSDA--TL-FPLSTFKELIHLSLRNASLTDVSL-HQ 304 (443)
Q Consensus 231 ~~L~~L~l~~~~~~~~~~~~~~~l~~~--~~~~~L~~L~l~~~~l~~~--~~-~~l~~~~~L~~L~l~~n~i~~~~~-~~ 304 (443)
++|+.|++++|.+.+. ..++ ..+ ..+++|++|++++|.+++. .+ ..+..+++|+.|++++|++++..| ..
T Consensus 173 ~~L~~L~Ls~N~l~~~--~~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 173 PALSTLDLSDNPELGE--RGLI--SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp SSCCEEECCSCTTCHH--HHHH--HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred CCCCEEECCCCCcCcc--hHHH--HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 5666666666654421 1122 334 7889999999999999842 22 335688999999999999987653 35
Q ss_pred hcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCC
Q 013423 305 LSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNG 380 (443)
Q Consensus 305 l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 380 (443)
+..+++|++|++++|+++.. |..+. ++|++|++++|+ +++. +. ...++.++.. . +.+|.+.+
T Consensus 249 ~~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N~-l~~~--p~-~~~l~~L~~L-~------L~~N~l~~ 310 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLKQV-PKGLP--AKLSVLDLSYNR-LDRN--PS-PDELPQVGNL-S------LKGNPFLD 310 (312)
T ss_dssp CCCCTTCCEEECTTSCCSSC-CSSCC--SEEEEEECCSSC-CCSC--CC-TTTSCEEEEE-E------CTTCTTTC
T ss_pred hhhcCCCCEEECCCCccChh-hhhcc--CCceEEECCCCC-CCCC--hh-HhhCCCCCEE-e------ccCCCCCC
Confidence 56789999999999999955 54444 799999999999 4422 22 3344555543 1 45777654
No 73
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=6.1e-22 Score=187.93 Aligned_cols=269 Identities=16% Similarity=0.113 Sum_probs=165.1
Q ss_pred EeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHH----HHhhCCC-CCcEEEcccccCCHHHHHHhcCC-----C
Q 013423 95 LNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGM----KHLLSIS-TLEKLWLSETGLTADGIALLSSL-----Q 164 (443)
Q Consensus 95 L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~ 164 (443)
+.++.+. ++...+..+...++|++|++++| .+++... ..+..++ +|++|++++|.++...+..+..+ +
T Consensus 3 ~~ls~n~-~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHP-GSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCT-TCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccc-chHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4455555 55444444444455666666666 4554433 4455555 66666666666655444433322 5
Q ss_pred CCCEEEecCCCCChhhHHh----ccCC-CCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCC-CCCCCEEec
Q 013423 165 NLSVLDLGGLPVTDLVLRS----LQVL-TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNL 238 (443)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~----l~~l-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~L~~L~l 238 (443)
+|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+... +.. +++|+.|++
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~---------------l~~~~~~L~~L~L 145 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA---------------FSNLPASITSLNL 145 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH---------------HTTSCTTCCEEEC
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH---------------HHhCCCceeEEEc
Confidence 5666666655554433332 2222 455555555555544333222210 111 245666666
Q ss_pred ccccccCCchhhhhhHHHhccCC-CCCEEEcCCCCCCchhhhccc----CC-CCCCEEEeeCCCCChH----HHHHhcC-
Q 013423 239 SFIQQVGAETDLVLSLTALQNLN-HLERLNLEQTQVSDATLFPLS----TF-KELIHLSLRNASLTDV----SLHQLSS- 307 (443)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~~~~~~-~L~~L~l~~~~l~~~~~~~l~----~~-~~L~~L~l~~n~i~~~----~~~~l~~- 307 (443)
++|.+.+.....++ ..+...+ +|++|++++|.+++..+..++ .+ ++|++|++++|.+++. ++..+..
T Consensus 146 s~N~l~~~~~~~l~--~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~ 223 (362)
T 3goz_A 146 RGNDLGIKSSDELI--QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223 (362)
T ss_dssp TTSCGGGSCHHHHH--HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS
T ss_pred cCCcCCHHHHHHHH--HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC
Confidence 66666554444555 5666666 999999999999887765544 45 5999999999999873 4445555
Q ss_pred CCCCCEEEecCcccCchhhh----hcCCCCCCCEEeccCCC--CCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCCC
Q 013423 308 LSKLTNLSIRDAVLTNSGLG----SFKPPRSLKLLDLHGGW--LLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGP 381 (443)
Q Consensus 308 l~~L~~L~l~~n~i~~~~~~----~l~~~~~L~~L~l~~n~--~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 381 (443)
.++|++|++++|.+++.++. .+..+++|++|++++|. .+++.....+...++.+.-... +. +.+|.+.+.
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~---Ld-L~~N~l~~~ 299 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL---VD-KNGKEIHPS 299 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEE---EC-TTSCBCCGG
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEE---Ee-cCCCcCCCc
Confidence 46999999999999987663 34567899999999996 4677778888777776553322 22 467777665
Q ss_pred CCCch
Q 013423 382 SPSRT 386 (443)
Q Consensus 382 ~p~~~ 386 (443)
.+..+
T Consensus 300 ~~~~~ 304 (362)
T 3goz_A 300 HSIPI 304 (362)
T ss_dssp GCHHH
T ss_pred chHHH
Confidence 44433
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=8.4e-23 Score=201.16 Aligned_cols=237 Identities=18% Similarity=0.172 Sum_probs=152.8
Q ss_pred HHHHHhcCC----CCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHH
Q 013423 81 EWMAYLGAF----RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADG 156 (443)
Q Consensus 81 ~~~~~~~~~----~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 156 (443)
.++..+..+ ++|++|++++|. ++...+..+..+++|++|++++| .+++..+ +..+++|++|++++|.++...
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~ 96 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELL 96 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSSEEEEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCCcCCCCC
Confidence 344444443 378888888887 66655667778888888888887 5554322 677788888888887766532
Q ss_pred HHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEE
Q 013423 157 IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECL 236 (443)
Q Consensus 157 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L 236 (443)
..++|++|++++|.+++..+ ..+++|++|++++|.+++..+..++.+++|+.|++++|.+.+.
T Consensus 97 -----~~~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------- 159 (487)
T 3oja_A 97 -----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV--------- 159 (487)
T ss_dssp -----ECTTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE---------
T ss_pred -----CCCCcCEEECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc---------
Confidence 23677777777777766532 2456777777777777766666666666666666666655531
Q ss_pred ecccccccCCchhhhhhHHHh-ccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEE
Q 013423 237 NLSFIQQVGAETDLVLSLTAL-QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLS 315 (443)
Q Consensus 237 ~l~~~~~~~~~~~~~~~l~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 315 (443)
.| ..+ ..+++|+.|++++|.+++. .....+++|+.|++++|.+++..+ .+..+++|+.|+
T Consensus 160 --------------~~--~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~ 220 (487)
T 3oja_A 160 --------------NF--AELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWIS 220 (487)
T ss_dssp --------------EG--GGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEE
T ss_pred --------------Ch--HHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEE
Confidence 11 222 2566777777777777664 223356777777777777776444 366777777777
Q ss_pred ecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCC
Q 013423 316 IRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 359 (443)
Q Consensus 316 l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~ 359 (443)
+++|.+++. |..+..+++|+.|++++|+ ++...+..+...++
T Consensus 221 Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~-l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 221 LRNNKLVLI-EKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQ 262 (487)
T ss_dssp CTTSCCCEE-CTTCCCCTTCCEEECTTCC-BCHHHHHHHHTTCH
T ss_pred ecCCcCccc-chhhccCCCCCEEEcCCCC-CcCcchHHHHHhCC
Confidence 777777764 4456666777777777777 44334444434333
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.5e-23 Score=203.86 Aligned_cols=232 Identities=20% Similarity=0.197 Sum_probs=193.8
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
++|++|+|++|. +....+..+..+++|++|+|++|. ++...+ +..+++|++|++++| .+++ +...++|++
T Consensus 34 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N-~l~~-----l~~~~~L~~ 103 (487)
T 3oja_A 34 WNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNN-YVQE-----LLVGPSIET 103 (487)
T ss_dssp GGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTTCTTCCEEECCSS-EEEE-----EEECTTCCE
T ss_pred CCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--cccCCCCCEEEecCC-cCCC-----CCCCCCcCE
Confidence 379999999996 444445678999999999999998 664332 889999999999999 5654 334589999
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhc-CCCCCCEEEcCCCC
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLK-MFPRLSFLNLAWTG 223 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~~~ 223 (443)
|++++|.+....+ ..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 9999999987643 3568999999999999998777888999999999999999988888876 79999999999999
Q ss_pred CCC---CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCC-h
Q 013423 224 VTK---LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT-D 299 (443)
Q Consensus 224 l~~---l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~-~ 299 (443)
+++ ...+++|+.|++++|.+.+ +| +.+..+++|+.|++++|.+++ .|..+..+++|+.|++++|.+. +
T Consensus 181 l~~~~~~~~l~~L~~L~Ls~N~l~~-----~~--~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 181 IYDVKGQVVFAKLKTLDLSSNKLAF-----MG--PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp CCEEECCCCCTTCCEEECCSSCCCE-----EC--GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred cccccccccCCCCCEEECCCCCCCC-----CC--HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 886 3457889999999998875 44 457788899999999999887 6667888899999999999987 5
Q ss_pred HHHHHhcCCCCCCEEEec
Q 013423 300 VSLHQLSSLSKLTNLSIR 317 (443)
Q Consensus 300 ~~~~~l~~l~~L~~L~l~ 317 (443)
..|..+..++.|+.++++
T Consensus 253 ~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHhCCCCcEEecc
Confidence 677778888888877775
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=5.1e-21 Score=193.96 Aligned_cols=221 Identities=19% Similarity=0.186 Sum_probs=147.9
Q ss_pred CCCCcEEEcccccCCHHHHH-HhcCCCCCCEEEecCCCCChhhHHhc-cCCCCccEEEecC---------CCCCchhhHh
Q 013423 139 ISTLEKLWLSETGLTADGIA-LLSSLQNLSVLDLGGLPVTDLVLRSL-QVLTKLEYLDLWG---------SQVSNRGAAV 207 (443)
Q Consensus 139 l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~---------~~l~~~~~~~ 207 (443)
+++|++|++++|.++..... .+..+++|++|++++| +.+.....+ ..+++|++|++.+ +.+++.....
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 34555555655555543332 2345566666666655 332222222 2356666666622 2344433333
Q ss_pred hc-CCCCCCEEEcCCCCCCC-----C-CCCCCCCEEecc--c---c-cccCCc-hhhhhhHHHhccCCCCCEEEcCCCCC
Q 013423 208 LK-MFPRLSFLNLAWTGVTK-----L-PNISSLECLNLS--F---I-QQVGAE-TDLVLSLTALQNLNHLERLNLEQTQV 273 (443)
Q Consensus 208 l~-~l~~L~~L~l~~~~l~~-----l-~~~~~L~~L~l~--~---~-~~~~~~-~~~~~~l~~~~~~~~L~~L~l~~~~l 273 (443)
+. .+++|+.|.+.++.++. + ..+++|+.|+++ + | .+.... ...++ ..+..+++|+.|++++ .+
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~--~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG--AIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH--HHHHHCTTCCEEECCS-SC
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHH--HHHhhCCCccEEeecC-cc
Confidence 33 36677777666666654 2 247888888888 2 2 222110 12344 4467788999999988 78
Q ss_pred CchhhhcccC-CCCCCEEEeeCCCCChHHHHHh-cCCCCCCEEEecCcccCchhhhhcC-CCCCCCEEeccCCCCCCHHH
Q 013423 274 SDATLFPLST-FKELIHLSLRNASLTDVSLHQL-SSLSKLTNLSIRDAVLTNSGLGSFK-PPRSLKLLDLHGGWLLTEDA 350 (443)
Q Consensus 274 ~~~~~~~l~~-~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~~n~~l~~~~ 350 (443)
++..+..++. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++.++..+. .+++|++|++++|+ +++..
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~ 522 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS-VSFGA 522 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC-CBHHH
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC-CCHHH
Confidence 8877777765 8999999999999988777666 6799999999999999877665444 57899999999999 58899
Q ss_pred HHHHHHhCCCceee
Q 013423 351 ILQFCKMHPRIEVW 364 (443)
Q Consensus 351 ~~~~~~~~~~l~~~ 364 (443)
+..++..+|.+++.
T Consensus 523 ~~~l~~~lp~l~i~ 536 (594)
T 2p1m_B 523 CKLLGQKMPKLNVE 536 (594)
T ss_dssp HHHHHHHCTTEEEE
T ss_pred HHHHHHhCCCCEEE
Confidence 99998999998774
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=3e-22 Score=182.82 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=61.4
Q ss_pred HHhccCCCCCEEEcCCCCCCchhhhcccCCCCCC----EEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcC
Q 013423 255 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELI----HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK 330 (443)
Q Consensus 255 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~----~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~ 330 (443)
..+..+++|++|++++|.+++..+..+..+++|+ .|++++|.+++..+..+ ...+|+.|++++|++++..+..+.
T Consensus 143 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTT
T ss_pred hhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhc
Confidence 4566677777777777777765555555555554 77777777775544333 334788888888887777666666
Q ss_pred CCCCCCEEeccCCCC
Q 013423 331 PPRSLKLLDLHGGWL 345 (443)
Q Consensus 331 ~~~~L~~L~l~~n~~ 345 (443)
.+++|++|++++|+.
T Consensus 222 ~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 222 RLTSLQKIWLHTNPW 236 (276)
T ss_dssp TCCSCCEEECCSSCB
T ss_pred ccccccEEEccCCcc
Confidence 777888888887764
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=1.9e-21 Score=195.49 Aligned_cols=245 Identities=21% Similarity=0.128 Sum_probs=190.8
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
++|++|++++|... .++. .+++|++|++++|. ++.... .+++|++|++++| .++.... .+++|+.
T Consensus 61 ~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N-~l~~l~~----~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSN-PLTHLPA----LPSGLCK 125 (622)
T ss_dssp TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEECSC-CCCCCCC----CCTTCCE
T ss_pred CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEECcCC-cCCCCCC----CCCCcCE
Confidence 47999999998632 2222 57889999999997 654221 6788999999998 5654211 5788999
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCC
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 224 (443)
|++++|.++.. |. .+++|++|++++|.++.. + ..+++|+.|++++|.+++ +| ..+++|+.|++++|.+
T Consensus 126 L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-~---~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 126 LWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-P---ALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQL 193 (622)
T ss_dssp EECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC
T ss_pred EECCCCCCCcC-CC---CCCCCCEEECcCCcCCCc-C---CccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCC
Confidence 99999988764 22 358899999999988764 2 245789999999998874 44 5678999999999999
Q ss_pred CCCC-CCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHH
Q 013423 225 TKLP-NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLH 303 (443)
Q Consensus 225 ~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~ 303 (443)
++++ .+++|+.|++++|.+.. +| ..+++|+.|++++|.+++ .| ..+++|+.|++++|.++.. |.
T Consensus 194 ~~l~~~~~~L~~L~L~~N~l~~-----l~-----~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~ 258 (622)
T 3g06_A 194 ASLPTLPSELYKLWAYNNRLTS-----LP-----ALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM 258 (622)
T ss_dssp SCCCCCCTTCCEEECCSSCCSS-----CC-----CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC
T ss_pred CCCCCccchhhEEECcCCcccc-----cC-----CCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc
Confidence 9876 46789999999998774 33 134789999999999987 44 4668999999999999853 32
Q ss_pred HhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHH
Q 013423 304 QLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCK 356 (443)
Q Consensus 304 ~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~ 356 (443)
.+++|+.|++++|.++.. |..+..+++|+.|++++|+ +++..+..+..
T Consensus 259 ---~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~ 306 (622)
T 3g06_A 259 ---LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNP-LSERTLQALRE 306 (622)
T ss_dssp ---CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSCC-CCHHHHHHHHH
T ss_pred ---ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCCC-CCCcCHHHHHh
Confidence 678999999999999965 6678889999999999999 77766665543
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=1.4e-21 Score=178.31 Aligned_cols=209 Identities=17% Similarity=0.179 Sum_probs=134.9
Q ss_pred CCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEE
Q 013423 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169 (443)
Q Consensus 90 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 169 (443)
++|++|++++|. ++......+.++++|++|++++| .++......|..+++|++|++++|.+....+..+..+++|++|
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCc-ccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 356666666665 55444445566666666666666 4554434445566666666666666665555556666666666
Q ss_pred EecCCCCChhhHHhccCCCCccEEEecCCCCCch-hhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCch
Q 013423 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR-GAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAET 248 (443)
Q Consensus 170 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 248 (443)
++++|.+....+..+..+++|++|++++|.+.+. +|..+..+++|+.|++++|.+++++ .
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-------------------~ 166 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-------------------C 166 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-------------------G
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC-------------------H
Confidence 6666666655444466666677777776666542 3556666666666666666554322 0
Q ss_pred hhhhhHHHhccCCCCC-EEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCc
Q 013423 249 DLVLSLTALQNLNHLE-RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 323 (443)
Q Consensus 249 ~~~~~l~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~ 323 (443)
. .+..+..++.+. .|++++|.+++..+..+ ...+|+.|++++|++++..+..+..+++|+.|++++|.++.
T Consensus 167 ~---~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 167 T---DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp G---GGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred H---HhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 0 113334445554 89999999987554444 44589999999999987766677889999999999998874
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=7.2e-21 Score=173.11 Aligned_cols=178 Identities=24% Similarity=0.325 Sum_probs=112.8
Q ss_pred CCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEE
Q 013423 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218 (443)
Q Consensus 139 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 218 (443)
+++|+.|+++++.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 34444444444444331 1234445555555555554442 2445555555555555555544444445555555555
Q ss_pred cCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCC
Q 013423 219 LAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 298 (443)
Q Consensus 219 l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~ 298 (443)
+++|.+++++ + ..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 116 L~~n~l~~~~-----------------------~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 116 LVENQLQSLP-----------------------D--GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp CTTSCCCCCC-----------------------T--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCccC-----------------------H--HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 5555444322 1 23556777888888888887766666778888888888888888
Q ss_pred hHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCC
Q 013423 299 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 345 (443)
Q Consensus 299 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~ 345 (443)
+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+.
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 76666677888888888888888887776677788888888888873
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=4.2e-21 Score=178.15 Aligned_cols=223 Identities=17% Similarity=0.109 Sum_probs=169.4
Q ss_pred CCCCcEEecCCCCCCCHHHHHH---hhCCCCCcEEEcccccCCHHHHHHh--cCCCCCCEEEecCCCCChhh----HHhc
Q 013423 114 MTCLKELDLSRCVKVTDAGMKH---LLSISTLEKLWLSETGLTADGIALL--SSLQNLSVLDLGGLPVTDLV----LRSL 184 (443)
Q Consensus 114 ~~~L~~L~l~~~~~l~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~----~~~l 184 (443)
...++.+.+.++ .+++..... +..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+.. ...+
T Consensus 63 ~~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 345777788776 555443332 2245678888888888877666666 77888889999888877531 2345
Q ss_pred cCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCC---------CCCCCCCCEEecccccccCCchhhhhhHH
Q 013423 185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK---------LPNISSLECLNLSFIQQVGAETDLVLSLT 255 (443)
Q Consensus 185 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~---------l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 255 (443)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ +..+++|+.|++++|.+... ...+. .
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~-~ 218 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP--TGVCA-A 218 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH--HHHHH-H
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch--HHHHH-H
Confidence 578889999999998887777788888999999999988642 35788999999999987631 11110 2
Q ss_pred HhccCCCCCEEEcCCCCCCchhhhcccCC---CCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCC
Q 013423 256 ALQNLNHLERLNLEQTQVSDATLFPLSTF---KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 332 (443)
Q Consensus 256 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~ 332 (443)
.+..+++|++|++++|.+++..|..+..+ ++|++|++++|+++. +|..+ .++|++|++++|++++... +..+
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~--~~~L~~L~Ls~N~l~~~~~--~~~l 293 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGL--PAKLRVLDLSSNRLNRAPQ--PDEL 293 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCC--CSCCSCEECCSCCCCSCCC--TTSC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhh--cCCCCEEECCCCcCCCCch--hhhC
Confidence 35788999999999999998767777665 799999999999984 45444 3799999999999998622 5678
Q ss_pred CCCCEEeccCCCC
Q 013423 333 RSLKLLDLHGGWL 345 (443)
Q Consensus 333 ~~L~~L~l~~n~~ 345 (443)
++|+.|++++|+.
T Consensus 294 ~~L~~L~L~~N~l 306 (310)
T 4glp_A 294 PEVDNLTLDGNPF 306 (310)
T ss_dssp CCCSCEECSSTTT
T ss_pred CCccEEECcCCCC
Confidence 9999999999993
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=1.9e-21 Score=176.99 Aligned_cols=206 Identities=19% Similarity=0.207 Sum_probs=123.7
Q ss_pred CCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCC
Q 013423 88 AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS 167 (443)
Q Consensus 88 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 167 (443)
.+++|++|++.+|. ++. ...+..+++|++|++++| .+++ ...+..+++|++|++++|.++...+..+..+++|+
T Consensus 39 ~l~~L~~L~l~~~~-i~~--~~~l~~l~~L~~L~l~~n-~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKS--VQGIQYLPNVRYLALGGN-KLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHTTCCEEECTTSC-CCC--CTTGGGCTTCCEEECTTS-CCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccceeeeeeCCCC-ccc--ccccccCCCCcEEECCCC-CCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34566666666665 432 223555666666666666 4443 23455566666666666666554444455666666
Q ss_pred EEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCc
Q 013423 168 VLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAE 247 (443)
Q Consensus 168 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~ 247 (443)
+|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------- 173 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP------------------- 173 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------------------
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-------------------
Confidence 6666666665554444556666666666666665444444555555555555555544322
Q ss_pred hhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhh
Q 013423 248 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 327 (443)
Q Consensus 248 ~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 327 (443)
+ ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+ .+++|+.++++.|.+++..|.
T Consensus 174 ----~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 174 ----E--GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp ----T--TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBC
T ss_pred ----H--HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccC
Confidence 1 234556777777777777777666566777778888887777652 356777777777777777665
Q ss_pred hcCC
Q 013423 328 SFKP 331 (443)
Q Consensus 328 ~l~~ 331 (443)
.+..
T Consensus 241 ~~~~ 244 (272)
T 3rfs_A 241 SAGS 244 (272)
T ss_dssp TTSC
T ss_pred cccc
Confidence 5543
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.5e-20 Score=170.93 Aligned_cols=201 Identities=21% Similarity=0.223 Sum_probs=132.3
Q ss_pred CCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEe
Q 013423 116 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 195 (443)
Q Consensus 116 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 195 (443)
..++++++++ .++.. +.. -.+++++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 17 ~~~~l~~~~~-~l~~i-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAI-PSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTS-CCSSC-CSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCC-CCCcc-CCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 3556666665 44431 111 1245666666666655544445555556666666555555443334455555555555
Q ss_pred cCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCc
Q 013423 196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 275 (443)
Q Consensus 196 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~ 275 (443)
++|.+.+..+..+..+++|+.|++++|.++.++ + ..+..+++|++|++++|.+++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------------~--~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP-----------------------P--RVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC-----------------------T--TTTTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeC-----------------------H--HHhCcCcCCCEEECCCCcCCc
Confidence 555554433344444555555555544443321 1 345678889999999998888
Q ss_pred hhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCC
Q 013423 276 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 345 (443)
Q Consensus 276 ~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~ 345 (443)
..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+.
T Consensus 148 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 6666688899999999999998877776788899999999999999988777788889999999999874
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=7.6e-21 Score=172.80 Aligned_cols=202 Identities=22% Similarity=0.300 Sum_probs=129.9
Q ss_pred CCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEE
Q 013423 91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLD 170 (443)
Q Consensus 91 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 170 (443)
+.+.++++++. ++.. +..+ .+++++|++++| .++......|..+++|++|++++|.++...+..+..+++|++|+
T Consensus 17 ~~~~l~~~~~~-l~~i-p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAI-PSNI--PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSC-CSSC-CSCC--CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCC-CCcc-CCCC--CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 34556665554 4331 1111 245666666665 44443333455666666666666666655444556677777777
Q ss_pred ecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhh
Q 013423 171 LGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDL 250 (443)
Q Consensus 171 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 250 (443)
+++|.+....+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.++.++.
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------------- 150 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--------------------- 150 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------------
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH---------------------
Confidence 77777776655566777888888888887776666667777777777777776664331
Q ss_pred hhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccC
Q 013423 251 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 322 (443)
Q Consensus 251 ~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~ 322 (443)
..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 151 ----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 151 ----GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ----TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 22445666777777777776655555667777777777777776655555667777777777777654
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=7e-21 Score=191.48 Aligned_cols=270 Identities=18% Similarity=0.056 Sum_probs=207.9
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
.+++.|+++++.. . .++..+. ++|++|++++|. ++... . .+++|++|++++| .++... . .+++|++
T Consensus 40 ~~l~~L~ls~n~L-~-~lp~~l~--~~L~~L~L~~N~-l~~lp-~---~l~~L~~L~Ls~N-~l~~lp-~---~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESGL-T-TLPDCLP--AHITTLVIPDNN-LTSLP-A---LPPELRTLEVSGN-QLTSLP-V---LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSCC-S-CCCSCCC--TTCSEEEECSCC-CSCCC-C---CCTTCCEEEECSC-CCSCCC-C---CCTTCCE
T ss_pred CCCcEEEecCCCc-C-ccChhhC--CCCcEEEecCCC-CCCCC-C---cCCCCCEEEcCCC-cCCcCC-C---CCCCCCE
Confidence 3699999999864 2 4444333 899999999998 66422 1 6899999999999 566432 1 7899999
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCC
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 224 (443)
|++++|.++.... .+++|+.|++++|.++.. +. .+++|++|++++|.+++ ++. .+++|+.|++++|.+
T Consensus 106 L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 106 LSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQL 173 (622)
T ss_dssp EEECSCCCCCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred EECcCCcCCCCCC----CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCC
Confidence 9999999887422 678999999999998874 32 35899999999999874 332 457899999999999
Q ss_pred CCCC-CCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHH
Q 013423 225 TKLP-NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLH 303 (443)
Q Consensus 225 ~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~ 303 (443)
+.++ .+++|+.|++++|.+.+ +| ...++|+.|++++|.++. .+. .+++|+.|++++|.+++. |
T Consensus 174 ~~l~~~~~~L~~L~Ls~N~l~~-----l~-----~~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~l-p- 237 (622)
T 3g06_A 174 TSLPMLPSGLQELSVSDNQLAS-----LP-----TLPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL-P- 237 (622)
T ss_dssp SCCCCCCTTCCEEECCSSCCSC-----CC-----CCCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-C-
T ss_pred CCCcccCCCCcEEECCCCCCCC-----CC-----CccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcC-C-
Confidence 9877 45789999999998875 33 134789999999999886 332 358899999999999863 3
Q ss_pred HhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCCCCC
Q 013423 304 QLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSP 383 (443)
Q Consensus 304 ~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p 383 (443)
..+++|+.|++++|.++.... .+++|+.|++++|. ++ .++.....++.++.. . +.+|.+.+..|
T Consensus 238 --~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~-L~--~lp~~l~~l~~L~~L-~------L~~N~l~~~~~ 301 (622)
T 3g06_A 238 --VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQ-LT--RLPESLIHLSSETTV-N------LEGNPLSERTL 301 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSC-CC--SCCGGGGGSCTTCEE-E------CCSCCCCHHHH
T ss_pred --CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCC-CC--cCCHHHhhccccCEE-E------ecCCCCCCcCH
Confidence 567899999999999997643 46799999999998 44 222233456666654 2 46888888777
Q ss_pred Cchhhhhhh
Q 013423 384 SRTSLRASL 392 (443)
Q Consensus 384 ~~~~~l~~L 392 (443)
..+..++..
T Consensus 302 ~~l~~L~~~ 310 (622)
T 3g06_A 302 QALREITSA 310 (622)
T ss_dssp HHHHHHHHS
T ss_pred HHHHhcccc
Confidence 777776654
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=4.9e-20 Score=169.01 Aligned_cols=204 Identities=25% Similarity=0.251 Sum_probs=132.1
Q ss_pred ccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCc
Q 013423 111 LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKL 190 (443)
Q Consensus 111 l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 190 (443)
+.+++++++++++++ .++.. +.. -.++++.|++++|.++...+..+..+++|++|++++|.++.... ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~i-p~~--~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTAL-PPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSC-CSC--CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCC-CCCcC-CCC--CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 345566666666665 44432 111 12455666666665555544555555555555555555554311 2445555
Q ss_pred cEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCC
Q 013423 191 EYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQ 270 (443)
Q Consensus 191 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 270 (443)
++|++++|.+. .+|..+..++ +|+.|++++|.+.+. .+ ..+..+++|+.|++++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~-------------------~L~~L~l~~N~l~~l----~~--~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLP-------------------ALTVLDVSFNRLTSL----PL--GALRGLGELQELYLKG 133 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCT-------------------TCCEEECCSSCCCCC----CS--STTTTCTTCCEEECTT
T ss_pred CEEECCCCcCC-cCchhhccCC-------------------CCCEEECCCCcCccc----CH--HHHcCCCCCCEEECCC
Confidence 55555555544 3333344444 455555555544431 11 3466788999999999
Q ss_pred CCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCC
Q 013423 271 TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 347 (443)
Q Consensus 271 ~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~ 347 (443)
|.+++..+..+..+++|+.|++++|+++...+..+..+++|+.|++++|+++.. +..+...++|+.|++++|+...
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccC
Confidence 999887777788899999999999999876666778899999999999999966 5556667799999999998543
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.1e-19 Score=168.40 Aligned_cols=190 Identities=23% Similarity=0.348 Sum_probs=112.9
Q ss_pred CCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccE
Q 013423 113 GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY 192 (443)
Q Consensus 113 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 192 (443)
.+++|++|++++| .++.. ..+..+++|++|++++|.+....+ +..+++|++|++++|.+.+. ..+..+++|++
T Consensus 39 ~l~~L~~L~l~~~-~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTS-CCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HcCCcCEEEeeCC-CccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 4677888888887 55542 356677888888888887776533 67777788888887777664 35677777777
Q ss_pred EEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCC
Q 013423 193 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ 272 (443)
Q Consensus 193 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 272 (443)
|++++|.+.+. + .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~---------------------------~l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNIS---------------------------PLAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG---------------------------GGGGCTTCCEEECCSSC
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCc---------------------------cccCCCCccEEEccCCc
Confidence 77777777643 2 2666777777777776665432 13344445555555555
Q ss_pred CCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCC
Q 013423 273 VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 273 l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 344 (443)
+++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|+
T Consensus 163 l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 163 VSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEE
T ss_pred CCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCe
Confidence 444222 4445555555555555443322 4445555555555555554432 4444555555555554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=1.2e-19 Score=168.04 Aligned_cols=195 Identities=27% Similarity=0.380 Sum_probs=154.9
Q ss_pred cCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCC
Q 013423 87 GAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNL 166 (443)
Q Consensus 87 ~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 166 (443)
..+++|++|++++|. ++.. ..+..+++|++|++++| .+++... +..+++|++|++++|.+... ..+..+++|
T Consensus 38 ~~l~~L~~L~l~~~~-i~~l--~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG-VTTI--EGVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSI 109 (308)
T ss_dssp HHHHTCCEEECTTSC-CCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred HHcCCcCEEEeeCCC-ccCc--hhhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence 356899999999997 6653 35788999999999999 6776433 88999999999999999874 468899999
Q ss_pred CEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCC
Q 013423 167 SVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGA 246 (443)
Q Consensus 167 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~ 246 (443)
++|++++|.+.+.. .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++++
T Consensus 110 ~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~------------------ 167 (308)
T 1h6u_A 110 KTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT------------------ 167 (308)
T ss_dssp CEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG------------------
T ss_pred CEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh------------------
Confidence 99999999998853 48899999999999999875433 777888888888887766432
Q ss_pred chhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCch
Q 013423 247 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 324 (443)
Q Consensus 247 ~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~ 324 (443)
.+..+++|+.|++++|.+++..+ +..+++|+.|++++|++++.. .+..+++|+.|++++|.+++.
T Consensus 168 ---------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 168 ---------PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp ---------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred ---------hhcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 14556777888888877776433 677788888888888877654 367788888888888887764
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=175.07 Aligned_cols=226 Identities=15% Similarity=0.128 Sum_probs=127.6
Q ss_pred CccEEEecCCCCCCHHHHHH--hcCCCCCcEEeecCCCCCChHHHHhc--cCCCCCcEEecCCCCCCCHH----HHHHhh
Q 013423 66 NAEAIELRGENSVDAEWMAY--LGAFRYLRSLNVADCRRVTSSALWAL--TGMTCLKELDLSRCVKVTDA----GMKHLL 137 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~l~~~----~~~~~~ 137 (443)
.++.+.+.++......+... +..+++|++|++++|. +....+..+ ..+++|++|++++| .+++. ....+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhh
Confidence 35666666654322222111 1223556777776665 444344444 56666667777666 44431 123344
Q ss_pred CCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhh--HHh--ccCCCCccEEEecCCCCCch--hhH-hhcC
Q 013423 138 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLV--LRS--LQVLTKLEYLDLWGSQVSNR--GAA-VLKM 210 (443)
Q Consensus 138 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~--l~~l~~L~~L~l~~~~l~~~--~~~-~l~~ 210 (443)
.+++|++|++++|.+....+..+..+++|++|++++|.+.+.. +.. +..+++|++|++++|.++.. .+. .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 5666666666666666555555666666666666666655421 111 24556666666666666421 111 2345
Q ss_pred CCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhcc---CCCCCEEEcCCCCCCchhhhcccCCCCC
Q 013423 211 FPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQN---LNHLERLNLEQTQVSDATLFPLSTFKEL 287 (443)
Q Consensus 211 l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~---~~~L~~L~l~~~~l~~~~~~~l~~~~~L 287 (443)
+++|++|++++|.+.+. .| ..+.. +++|++|++++|.++. .|..+. ++|
T Consensus 223 l~~L~~L~Ls~N~l~~~-----------------------~p--~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L 274 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRAT-----------------------VN--PSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKL 274 (310)
T ss_dssp TCCCSSEECTTSCCCCC-----------------------CC--SCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCC
T ss_pred CCCCCEEECCCCCCCcc-----------------------ch--hhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCC
Confidence 56666666666655543 11 11222 3577888888887774 455443 678
Q ss_pred CEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCc
Q 013423 288 IHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 323 (443)
Q Consensus 288 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~ 323 (443)
+.|++++|++++. | .+..+++|+.|++++|++++
T Consensus 275 ~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 275 RVLDLSSNRLNRA-P-QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCEECCSCCCCSC-C-CTTSCCCCSCEECSSTTTSC
T ss_pred CEEECCCCcCCCC-c-hhhhCCCccEEECcCCCCCC
Confidence 8888888887753 2 25667888888888888775
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=9.3e-20 Score=167.13 Aligned_cols=203 Identities=20% Similarity=0.138 Sum_probs=128.4
Q ss_pred hcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCC
Q 013423 86 LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQN 165 (443)
Q Consensus 86 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 165 (443)
+..++++++++++++. ++.. +..+ .+++++|++++| .++...+..|..+++|++|++++|.++...+ ...+++
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~i-p~~~--~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTAL-PPDL--PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSC-CSCC--CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTT
T ss_pred ccccCCccEEECCCCC-CCcC-CCCC--CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCc
Confidence 3456677777777765 5432 1112 356777777776 5655545566777777777777777766422 256778
Q ss_pred CCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccC
Q 013423 166 LSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVG 245 (443)
Q Consensus 166 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~ 245 (443)
|++|++++|.+... +..+..+++|++|++++|.+++..+..|..+++|+.|++++|.++.++.
T Consensus 79 L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~---------------- 141 (290)
T 1p9a_G 79 LGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP---------------- 141 (290)
T ss_dssp CCEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT----------------
T ss_pred CCEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh----------------
Confidence 88888888877754 4556778888888888888876656677778888888888877765431
Q ss_pred CchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccC
Q 013423 246 AETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 322 (443)
Q Consensus 246 ~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~ 322 (443)
..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++. +|..+...++|+.+++++|.+.
T Consensus 142 ---------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 142 ---------GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ---------TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred ---------hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCcc
Confidence 123344556666666666555444445556666666666666552 3334445556666666666543
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=6.3e-20 Score=163.58 Aligned_cols=194 Identities=21% Similarity=0.226 Sum_probs=131.6
Q ss_pred CCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCC-CChhhHHhccCCCCccEEEecC-CCCCchhhHhhcCCCCCCEEE
Q 013423 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLP-VTDLVLRSLQVLTKLEYLDLWG-SQVSNRGAAVLKMFPRLSFLN 218 (443)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~ 218 (443)
++++|++++|+++...+..+..+++|++|++++|. ++...+..+..+++|++|++++ |.+++..+..|.++++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666655544455566666666666664 5555444566666666666666 566544445566666666666
Q ss_pred cCCCCCCCCC---CCCCCC---EEecccc-cccCCchhhhhhHHHhccCCCCC-EEEcCCCCCCchhhhcccCCCCCCEE
Q 013423 219 LAWTGVTKLP---NISSLE---CLNLSFI-QQVGAETDLVLSLTALQNLNHLE-RLNLEQTQVSDATLFPLSTFKELIHL 290 (443)
Q Consensus 219 l~~~~l~~l~---~~~~L~---~L~l~~~-~~~~~~~~~~~~l~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~L 290 (443)
+++|.+++++ .+++|+ .|++++| .+.. ++. ..+..+++|+ .|++++|.++...+..+.. ++|+.|
T Consensus 112 l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~-----i~~-~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L 184 (239)
T 2xwt_C 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS-----IPV-NAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAV 184 (239)
T ss_dssp EEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCE-----ECT-TTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEE
T ss_pred CCCCCCccccccccccccccccEEECCCCcchhh-----cCc-ccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEE
Confidence 6666655533 445555 7777777 5543 221 3467788999 9999999888644434444 889999
Q ss_pred EeeCCC-CChHHHHHhcCC-CCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCC
Q 013423 291 SLRNAS-LTDVSLHQLSSL-SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 291 ~l~~n~-i~~~~~~~l~~l-~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 344 (443)
++++|+ +++..+..+..+ ++|+.|++++|++++..+. .+++|+.|+++++.
T Consensus 185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred EcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 999995 887767778888 9999999999999876444 45689999998876
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=7.6e-19 Score=157.75 Aligned_cols=176 Identities=23% Similarity=0.292 Sum_probs=118.1
Q ss_pred CcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCC
Q 013423 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221 (443)
Q Consensus 142 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 221 (443)
.++++++++.++.. |..+. ++++.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 16 ~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 44555555544432 22211 3555566665555555444555566666666666655554444555555555555555
Q ss_pred CCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHH
Q 013423 222 TGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS 301 (443)
Q Consensus 222 ~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~ 301 (443)
|.++.++ + ..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus 93 n~l~~~~-----------------------~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 93 NQLASLP-----------------------L--GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp SCCCCCC-----------------------T--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcccccC-----------------------h--hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 5544322 1 34556778888888888888766666778888999999998888776
Q ss_pred HHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCC
Q 013423 302 LHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 345 (443)
Q Consensus 302 ~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~ 345 (443)
+..+..+++|++|++++|++++..+..+..+++|++|++++|+.
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 66788888999999999998888777788888999999999884
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=1e-19 Score=162.18 Aligned_cols=197 Identities=14% Similarity=0.163 Sum_probs=116.7
Q ss_pred CCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEccc-ccCCHHHHHHhcCCCCCCEE
Q 013423 91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSE-TGLTADGIALLSSLQNLSVL 169 (443)
Q Consensus 91 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L 169 (443)
+|++|++++|. ++......+.++++|++|++++|..++......|..+++|++|++++ |.++...+..+..+++|++|
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 56666666665 55444445556666666666665224443333455666666666665 56655544455566666666
Q ss_pred EecCCCCChhhHHhccCCCCcc---EEEecCC-CCCchhhHhhcCCCCCC-EEEcCCCCCCCCCCCCCCCEEeccccccc
Q 013423 170 DLGGLPVTDLVLRSLQVLTKLE---YLDLWGS-QVSNRGAAVLKMFPRLS-FLNLAWTGVTKLPNISSLECLNLSFIQQV 244 (443)
Q Consensus 170 ~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~l~~~~~~~l~~l~~L~-~L~l~~~~l~~l~~~~~L~~L~l~~~~~~ 244 (443)
++++|.+... +. +..+++|+ +|++++| .+.+..+..|..+++|+ .|++++|.++.++.
T Consensus 111 ~l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~--------------- 173 (239)
T 2xwt_C 111 GIFNTGLKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG--------------- 173 (239)
T ss_dssp EEEEECCCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT---------------
T ss_pred eCCCCCCccc-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH---------------
Confidence 6666665553 22 55555555 6666666 56544444555666666 66666655443221
Q ss_pred CCchhhhhhHHHhccCCCCCEEEcCCCC-CCchhhhcccCC-CCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCc
Q 013423 245 GAETDLVLSLTALQNLNHLERLNLEQTQ-VSDATLFPLSTF-KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA 319 (443)
Q Consensus 245 ~~~~~~~~~l~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 319 (443)
..+.. ++|+.|++++|. +++..+..+..+ ++|+.|++++|.+++..+. .+++|+.|+++++
T Consensus 174 ----------~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 174 ----------YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp ----------TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred ----------hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 12222 567777777774 776555667777 7788888888777644322 4677778877765
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=1.3e-18 Score=156.28 Aligned_cols=179 Identities=23% Similarity=0.252 Sum_probs=121.3
Q ss_pred CCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEe
Q 013423 116 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 195 (443)
Q Consensus 116 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 195 (443)
..++++++++ .++.. +.. -.++++.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~-~l~~~-p~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSV-PSG--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTC-CCSSC-CSC--CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCC-Ccccc-CCC--CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4556666665 44432 111 1256777777777777666666777778888888887777766666777888888888
Q ss_pred cCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCc
Q 013423 196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 275 (443)
Q Consensus 196 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~ 275 (443)
++|.+++..+..|..+++|+.|++++|.++.++. ..+..+++|+.|++++|.+++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------------------~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-------------------------GVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------------------TTTTTCTTCCEEECCSSCCCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcCh-------------------------hHhccCCcccEEECcCCcCCc
Confidence 8888776666667777777777777777664431 223455667777777777766
Q ss_pred hhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCc
Q 013423 276 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 323 (443)
Q Consensus 276 ~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~ 323 (443)
..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.++.
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 555556677777777777777776655566677777777777777654
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=4.3e-17 Score=149.49 Aligned_cols=168 Identities=25% Similarity=0.377 Sum_probs=95.9
Q ss_pred CCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEE
Q 013423 138 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL 217 (443)
Q Consensus 138 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 217 (443)
.+++|+.|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ +..+..+++|+.|
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--ChhhccCCCCCEE
Confidence 456677777777766654 235566777777777777666532 6667777777777776653 2236666666666
Q ss_pred EcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCC
Q 013423 218 NLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 297 (443)
Q Consensus 218 ~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i 297 (443)
++++|.++.++ .+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+
T Consensus 118 ~L~~n~i~~~~---------------------------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 118 SLEHNGISDIN---------------------------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp ECTTSCCCCCG---------------------------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred ECCCCcCCCCh---------------------------hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 66666655422 233445555555555555542 3345555555555555555
Q ss_pred ChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCC
Q 013423 298 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 298 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 344 (443)
++..+ +..+++|+.|++++|.+++.. .+..+++|+.|++++|+
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEE
T ss_pred ccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCc
Confidence 54333 455555555555555555432 24455555555555554
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=2.3e-17 Score=151.27 Aligned_cols=175 Identities=27% Similarity=0.361 Sum_probs=141.7
Q ss_pred cCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCcc
Q 013423 112 TGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLE 191 (443)
Q Consensus 112 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 191 (443)
..+++|++|++++| .++.. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred hhcCcccEEEccCC-CcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCC
Confidence 46788999999998 66653 457889999999999999988644 88999999999999999884 4589999999
Q ss_pred EEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCC
Q 013423 192 YLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQT 271 (443)
Q Consensus 192 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~ 271 (443)
+|++++|.+.+. ..+..+++|+.|++++|.++++ ..+..+++|+.|++++|
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~---------------------------~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---------------------------TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC---------------------------GGGGGCTTCSEEECCSS
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc---------------------------hhhccCCCCCEEEccCC
Confidence 999999998753 4577788888888887766532 23456778888888888
Q ss_pred CCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhh
Q 013423 272 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 326 (443)
Q Consensus 272 ~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 326 (443)
.+++..+ +..+++|+.|++++|.+++.. .+..+++|+.|++++|+++..+.
T Consensus 167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 167 QISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCCE
T ss_pred ccccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCcc
Confidence 8887544 778888999999999887642 47888899999999998876543
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=7.9e-17 Score=161.81 Aligned_cols=173 Identities=27% Similarity=0.364 Sum_probs=101.7
Q ss_pred cCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCcc
Q 013423 112 TGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLE 191 (443)
Q Consensus 112 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 191 (443)
..+++|+.|++++| .+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 40 ~~L~~L~~L~l~~n-~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIANNS-DIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCTTC-CCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hcCCCCCEEECcCC-CCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 34566677777766 44432 245566666666666666665432 55666666666666665553 2455566666
Q ss_pred EEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCC
Q 013423 192 YLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQT 271 (443)
Q Consensus 192 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~ 271 (443)
+|++++|.+.+. ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l---------------------------~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---------------------------TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC---------------------------GGGGSCTTCSEEECCSS
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc---------------------------hhhcccCCCCEEECcCC
Confidence 666666655432 2344555555555555544421 23445666777777777
Q ss_pred CCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCch
Q 013423 272 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 324 (443)
Q Consensus 272 ~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~ 324 (443)
.+.+..+ +..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 164 QISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 6666444 66667777777777766653 2466667777777777766654
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=3e-16 Score=157.59 Aligned_cols=165 Identities=22% Similarity=0.330 Sum_probs=117.2
Q ss_pred CCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCC---CCCCCCCCEEecc
Q 013423 163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK---LPNISSLECLNLS 239 (443)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~---l~~~~~L~~L~l~ 239 (443)
+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.. +..+++|+.|+++
T Consensus 42 L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEEec
Confidence 34444445544444432 134455555555555555543322 4555555555555555444 3456667777777
Q ss_pred cccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCc
Q 013423 240 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA 319 (443)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 319 (443)
+|.+.+. +.+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+++..+ +..+++|+.|++++|
T Consensus 118 ~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 118 HNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp TSCCCCC--------GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CCCCCCC--------ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 7766542 3467889999999999999974 568899999999999999987766 889999999999999
Q ss_pred ccCchhhhhcCCCCCCCEEeccCCCC
Q 013423 320 VLTNSGLGSFKPPRSLKLLDLHGGWL 345 (443)
Q Consensus 320 ~i~~~~~~~l~~~~~L~~L~l~~n~~ 345 (443)
.+++. ..+..+++|+.|+|++|+.
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEE
T ss_pred CCCCC--hHHccCCCCCEEEccCCcC
Confidence 99986 3578899999999999984
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=4e-16 Score=135.74 Aligned_cols=133 Identities=23% Similarity=0.276 Sum_probs=94.5
Q ss_pred CCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEE
Q 013423 188 TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLN 267 (443)
Q Consensus 188 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~ 267 (443)
++|++|++++|.+.+..+..+..+++|+.|++++|.++.++ + ..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------------~--~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-----------------------N--GVFNKLTSLTYLN 82 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-----------------------T--TTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-----------------------h--hhcCCCCCcCEEE
Confidence 45666666666665444444555566666666655544322 1 2345677888888
Q ss_pred cCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCC
Q 013423 268 LEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 345 (443)
Q Consensus 268 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~ 345 (443)
+++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+.
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 888888775555677888888888888888876666677888889999988888877666677788899999988863
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=5e-16 Score=154.32 Aligned_cols=186 Identities=18% Similarity=0.147 Sum_probs=90.6
Q ss_pred CCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEe
Q 013423 116 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 195 (443)
Q Consensus 116 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 195 (443)
+|++|++++| .+++. +..+ .++|++|++++|.++.. | ..+++|++|++++|.+++. +. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n-~L~~l-p~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSL-PDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSS-CCSCC-CSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEEC
T ss_pred CccEEEeCCC-CCCcc-CHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEEC
Confidence 5666666655 34431 1111 24555555555555532 2 2345555555555555442 22 222 4555555
Q ss_pred cCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCc
Q 013423 196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 275 (443)
Q Consensus 196 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~ 275 (443)
++|.+++ +|. .+++|+.|++++|.+++++. .+++|+.|++++|.+++
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~-----------------------------~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTMLPE-----------------------------LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-----------------------------CCTTCCEEECCSSCCSC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCcCCC-----------------------------cCCCcCEEECCCCCCCC
Confidence 5555443 222 34444444444444444331 24456666666665555
Q ss_pred hhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCC-------CEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCH
Q 013423 276 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL-------TNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE 348 (443)
Q Consensus 276 ~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L-------~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~ 348 (443)
.|. +. ++|+.|++++|+++. +|. +.. +| +.|++++|+|+.+ |..+..+++|+.|++++|+ ++.
T Consensus 175 -lp~-l~--~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~-l~~ 244 (571)
T 3cvr_A 175 -LPE-LP--ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNP-LSS 244 (571)
T ss_dssp -CCC-CC--TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSS-CCH
T ss_pred -cch-hh--CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCc-CCC
Confidence 333 33 566666666666552 222 222 44 6666666666654 3344446666666666666 555
Q ss_pred HHHHHHHH
Q 013423 349 DAILQFCK 356 (443)
Q Consensus 349 ~~~~~~~~ 356 (443)
..+..+..
T Consensus 245 ~~p~~l~~ 252 (571)
T 3cvr_A 245 RIRESLSQ 252 (571)
T ss_dssp HHHHHHHH
T ss_pred cCHHHHHH
Confidence 55444433
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=3.1e-16 Score=135.11 Aligned_cols=149 Identities=19% Similarity=0.280 Sum_probs=90.0
Q ss_pred CCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEeccccc
Q 013423 163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQ 242 (443)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~ 242 (443)
+++|++|++++|.+... + .+..+++|++|++++|.+.. +..+..+++|+.|++++|.+++
T Consensus 43 l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~---------------- 102 (197)
T 4ezg_A 43 MNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTS---------------- 102 (197)
T ss_dssp HHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBG----------------
T ss_pred cCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCc----------------
Confidence 45666666666666643 2 45666666666666665432 2345555555555555554442
Q ss_pred ccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCC-CChHHHHHhcCCCCCCEEEecCccc
Q 013423 243 QVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSLSKLTNLSIRDAVL 321 (443)
Q Consensus 243 ~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~n~i 321 (443)
. .+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|. +++. + .+..+++|++|++++|++
T Consensus 103 ---~----~~--~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 103 ---D----KI--PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp ---G----GS--CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCC
T ss_pred ---c----cC--hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCC
Confidence 1 12 334556667777777777766666666677777777777776 5543 2 466677777777777777
Q ss_pred CchhhhhcCCCCCCCEEeccCCC
Q 013423 322 TNSGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 322 ~~~~~~~l~~~~~L~~L~l~~n~ 344 (443)
++.. .+..+++|++|++++|+
T Consensus 172 ~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 172 HDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCCT--TGGGCSSCCEEEECBC-
T ss_pred cChH--HhccCCCCCEEEeeCcc
Confidence 6643 45566677777777776
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=2.1e-16 Score=137.49 Aligned_cols=160 Identities=21% Similarity=0.181 Sum_probs=83.8
Q ss_pred CCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcC
Q 013423 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220 (443)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 220 (443)
+|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333334444445555554444444333334444555555555554443333334444444444444
Q ss_pred CCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChH
Q 013423 221 WTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 300 (443)
Q Consensus 221 ~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~ 300 (443)
+|.++.++ + ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 109 ~N~l~~~~-----------------------~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 109 TNQLQSLP-----------------------D--GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp SSCCCCCC-----------------------T--TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CCcCcccC-----------------------H--hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence 44433221 1 234556667777777776666555456667777777777776542
Q ss_pred HHHHhcCCCCCCEEEecCcccCchhhhhcCCC
Q 013423 301 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 332 (443)
Q Consensus 301 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~ 332 (443)
.+++|+.|+++.|.+++..|..+..+
T Consensus 163 ------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 45667777777777776666555543
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=2.5e-16 Score=135.73 Aligned_cols=148 Identities=19% Similarity=0.269 Sum_probs=73.3
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEE
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 145 (443)
+|+.|++++|... .++ .+..+++|++|++++|. ++. +..+..+++|++|++++| .+++..+..+..+++|++|
T Consensus 45 ~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~-~~~--~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 45 SLTYITLANINVT--DLT-GIEYAHNIKDLTINNIH-ATN--YNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp TCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCC-CSC--CGGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEE
T ss_pred CccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCC-CCc--chhhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEE
Confidence 4666666665422 222 35555666666666664 433 224455556666666655 4444334444555555555
Q ss_pred EcccccCCHHHHHHhcCCCCCCEEEecCCC-CChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCC
Q 013423 146 WLSETGLTADGIALLSSLQNLSVLDLGGLP-VTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (443)
Q Consensus 146 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 224 (443)
++++|.++...+..++.+++|++|++++|. +.+. + .+..+++|++|++++|.+.+. + .+..+++|+.|++++|.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 555555555444455555555555555554 4332 1 344555555555555554421 1 344444444444444443
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=5.4e-16 Score=136.02 Aligned_cols=135 Identities=18% Similarity=0.259 Sum_probs=89.5
Q ss_pred CCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEE
Q 013423 188 TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLN 267 (443)
Q Consensus 188 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~ 267 (443)
+++++|++++|.+.+..+..|..+++|+.|++++|.++.+ .| ..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-----------------------~~--~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-----------------------AP--DAFQGLRSLNSLV 86 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-----------------------CT--TTTTTCSSCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-----------------------CH--HHhhCCcCCCEEE
Confidence 3455555555555443333444445555555544443321 12 4456667777777
Q ss_pred cCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCC
Q 013423 268 LEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 347 (443)
Q Consensus 268 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~ 347 (443)
+++|.++...+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+...
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 77777776555556777888888888888777767777788888888888888887776677778888888888887533
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=4.5e-16 Score=140.43 Aligned_cols=165 Identities=21% Similarity=0.239 Sum_probs=97.0
Q ss_pred CcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCC
Q 013423 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221 (443)
Q Consensus 142 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 221 (443)
+..++++++.+++.. .+..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|+.|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 334444445444322 233456666666666666553 2 45666677777777776664333 66677777777777
Q ss_pred CCCCCCCCC--CCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCCh
Q 013423 222 TGVTKLPNI--SSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 299 (443)
Q Consensus 222 ~~l~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~ 299 (443)
|.+++++.. ++|+.|++++|.+.+. +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++
T Consensus 95 N~l~~l~~~~~~~L~~L~L~~N~l~~~--------~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 95 NRLKNLNGIPSACLSRLFLDNNELRDT--------DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp SCCSCCTTCCCSSCCEEECCSSCCSBS--------GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred CccCCcCccccCcccEEEccCCccCCC--------hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence 766654311 4566666666655431 2355666677777777666653 245666666777776666665
Q ss_pred HHHHHhcCCCCCCEEEecCcccCch
Q 013423 300 VSLHQLSSLSKLTNLSIRDAVLTNS 324 (443)
Q Consensus 300 ~~~~~l~~l~~L~~L~l~~n~i~~~ 324 (443)
. ..+..+++|+.|++++|.++..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 4 4556666666666666666554
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=4.6e-16 Score=154.58 Aligned_cols=188 Identities=17% Similarity=0.152 Sum_probs=147.7
Q ss_pred CCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCE
Q 013423 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSV 168 (443)
Q Consensus 89 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 168 (443)
+.+++.|++++|. ++. .+..+ +++|++|++++| .++.. + ..+++|++|++++|.++.. |. +.. +|++
T Consensus 58 ~~~L~~L~Ls~n~-L~~-lp~~l--~~~L~~L~Ls~N-~l~~i-p---~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~ 124 (571)
T 3cvr_A 58 INQFSELQLNRLN-LSS-LPDNL--PPQITVLEITQN-ALISL-P---ELPASLEYLDACDNRLSTL-PE-LPA--SLKH 124 (571)
T ss_dssp HTTCSEEECCSSC-CSC-CCSCC--CTTCSEEECCSS-CCSCC-C---CCCTTCCEEECCSSCCSCC-CC-CCT--TCCE
T ss_pred cCCccEEEeCCCC-CCc-cCHhH--cCCCCEEECcCC-CCccc-c---cccCCCCEEEccCCCCCCc-ch-hhc--CCCE
Confidence 3599999999997 665 33223 478999999999 67743 2 5689999999999999884 44 544 9999
Q ss_pred EEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCC-CCCCEEecccccccCCc
Q 013423 169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNI-SSLECLNLSFIQQVGAE 247 (443)
Q Consensus 169 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~L~~L~l~~~~~~~~~ 247 (443)
|++++|.+++. +. .+++|++|++++|.+++ +|. .+++|+.|++++|.+++++.+ ++|+.|++++|.+..
T Consensus 125 L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~~-- 194 (571)
T 3cvr_A 125 LDVDNNQLTML-PE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLES-- 194 (571)
T ss_dssp EECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS--
T ss_pred EECCCCcCCCC-CC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCCc--
Confidence 99999999884 43 68999999999999985 454 678999999999998886643 689999999998774
Q ss_pred hhhhhhHHHhccCCCC-------CEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCC
Q 013423 248 TDLVLSLTALQNLNHL-------ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL 308 (443)
Q Consensus 248 ~~~~~~l~~~~~~~~L-------~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l 308 (443)
+| . +.. +| +.|++++|.++. +|..+..+++|+.|++++|.+++..|..+..+
T Consensus 195 ---lp--~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 195 ---LP--A-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ---CC--C-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ---hh--h-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 34 2 222 55 899999998886 66667778899999999999988888777654
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=3.4e-16 Score=148.15 Aligned_cols=159 Identities=20% Similarity=0.203 Sum_probs=97.4
Q ss_pred CCCEEEecCCCCChhhHHhcc-CCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccc
Q 013423 165 NLSVLDLGGLPVTDLVLRSLQ-VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQ 243 (443)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~ 243 (443)
.++.|++++|.++...+..+. .+++|++|++++|.+.+..+..|.++++|+.|++++|.++.++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~--------------- 104 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD--------------- 104 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---------------
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC---------------
Confidence 355555555555554333444 5555566666555555444445555555555555555444221
Q ss_pred cCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHh---cCCCCCCEEEecCcc
Q 013423 244 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL---SSLSKLTNLSIRDAV 320 (443)
Q Consensus 244 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l---~~l~~L~~L~l~~n~ 320 (443)
+ ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+ ..+++|+.|++++|+
T Consensus 105 --------~--~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 105 --------E--FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp --------T--TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred --------H--HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 1 235566777777777777777666677777778888888777776544444 457788888888888
Q ss_pred cCchhhhhcCCCCC--CCEEeccCCCCCCH
Q 013423 321 LTNSGLGSFKPPRS--LKLLDLHGGWLLTE 348 (443)
Q Consensus 321 i~~~~~~~l~~~~~--L~~L~l~~n~~l~~ 348 (443)
++...+..+..++. ++.|++++|+...+
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 87776666655555 47788888875433
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=7.9e-16 Score=134.96 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=113.8
Q ss_pred cEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCC
Q 013423 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT 222 (443)
Q Consensus 143 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 222 (443)
+.++++++.++.. |..+ .++++.|++++|.+....+..+..+++|++|++++|.+.+..+..|.++++|+.|++++|
T Consensus 14 ~~v~c~~~~l~~i-P~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSC-CSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcC-CCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4556666655543 2222 257888888888887766667788888888888888888777788888888888888888
Q ss_pred CCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHH
Q 013423 223 GVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 302 (443)
Q Consensus 223 ~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~ 302 (443)
.++.++. ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+
T Consensus 91 ~l~~l~~-------------------------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 91 KITELPK-------------------------SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp CCCCCCT-------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCccCH-------------------------hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 7775441 234566778888888888877767777888888888888888877666
Q ss_pred HHhcCCCCCCEEEecCcccCc
Q 013423 303 HQLSSLSKLTNLSIRDAVLTN 323 (443)
Q Consensus 303 ~~l~~l~~L~~L~l~~n~i~~ 323 (443)
..+..+++|+.|++++|.+..
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEEC
T ss_pred HHHhCCCCCCEEEeCCCCcCC
Confidence 677788888888888887653
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=9.9e-16 Score=134.33 Aligned_cols=91 Identities=22% Similarity=0.266 Sum_probs=74.2
Q ss_pred HhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCC
Q 013423 256 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 335 (443)
Q Consensus 256 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L 335 (443)
.+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence 45667788888888888887667777888888888888888887777778888888888888888888877778888888
Q ss_pred CEEeccCCCCC
Q 013423 336 KLLDLHGGWLL 346 (443)
Q Consensus 336 ~~L~l~~n~~l 346 (443)
++|++++|+..
T Consensus 156 ~~L~L~~N~l~ 166 (220)
T 2v70_A 156 STLNLLANPFN 166 (220)
T ss_dssp CEEECCSCCEE
T ss_pred CEEEecCcCCc
Confidence 88888888743
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=2.3e-16 Score=148.72 Aligned_cols=136 Identities=13% Similarity=0.065 Sum_probs=71.2
Q ss_pred CCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE-EEcccccCCHHHHHHhcCCCCCCE
Q 013423 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK-LWLSETGLTADGIALLSSLQNLSV 168 (443)
Q Consensus 90 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~-L~l~~~~~~~~~~~~l~~l~~L~~ 168 (443)
+++++|+|++|+ ++.....+|.++++|++|++++|...+.....+|.+++++++ +.+.+|++....+..|..+++|++
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 456666666665 555444456666666666666663222222234455555554 344445565555555666666666
Q ss_pred EEecCCCCChhhHHhccCCCCccEEEecCC-CCCchhhHhhcCC-CCCCEEEcCCCCCCC
Q 013423 169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGS-QVSNRGAAVLKMF-PRLSFLNLAWTGVTK 226 (443)
Q Consensus 169 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~l~~l-~~L~~L~l~~~~l~~ 226 (443)
|++++|.+....+..+.....+..+++.++ .+....+..|..+ ..++.|++++|.++.
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 666666655543333334445555655443 3433333334433 245556666665554
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=3.2e-16 Score=147.78 Aligned_cols=235 Identities=15% Similarity=0.083 Sum_probs=170.3
Q ss_pred cEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHH-HHHHhcCCCCCCE-EE
Q 013423 93 RSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTAD-GIALLSSLQNLSV-LD 170 (443)
Q Consensus 93 ~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~-L~ 170 (443)
++++.++++ ++.. +..+ .+++++|++++| .++.....+|.++++|++|++++|.+.+. .+..|.+++++.+ +.
T Consensus 12 ~~v~C~~~~-Lt~i-P~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESK-VTEI-PSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTT-CCSC-CTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCC-CCcc-CcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 456666665 5542 2223 367999999998 78766556788999999999999988653 3456788888775 55
Q ss_pred ecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCC-CCCCCC-----CCC-CCCCEEecccccc
Q 013423 171 LGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW-TGVTKL-----PNI-SSLECLNLSFIQQ 243 (443)
Q Consensus 171 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-~~l~~l-----~~~-~~L~~L~l~~~~~ 243 (443)
+.+|.+....+..+..+++|++|++++|.+....+..+....++..+++.+ +.+..+ ..+ ..++.|++++|.+
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 667888887778889999999999999988765555566667788888855 455543 333 4688899999987
Q ss_pred cCCchhhhhhHHHhccCCCCCEEEcCC-CCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcc-c
Q 013423 244 VGAETDLVLSLTALQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV-L 321 (443)
Q Consensus 244 ~~~~~~~~~~l~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-i 321 (443)
.. ++ .......+|+.+++.+ |.++...+..|..+++|+.|++++|+++...+ ..+.+|+.|.+.++. +
T Consensus 167 ~~-----i~--~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~---~~~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 167 QE-----IH--NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS---YGLENLKKLRARSTYNL 236 (350)
T ss_dssp CE-----EC--TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS---SSCTTCCEEECTTCTTC
T ss_pred cC-----CC--hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh---hhhccchHhhhccCCCc
Confidence 64 44 3333456789999985 56666555567889999999999999986543 235677777776654 5
Q ss_pred CchhhhhcCCCCCCCEEeccCCC
Q 013423 322 TNSGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 322 ~~~~~~~l~~~~~L~~L~l~~n~ 344 (443)
+.. | .+..+++|+.+++.++.
T Consensus 237 ~~l-P-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 237 KKL-P-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CCC-C-CTTTCCSCCEEECSCHH
T ss_pred CcC-C-CchhCcChhhCcCCCCc
Confidence 543 3 36677899999987543
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=3.6e-15 Score=131.66 Aligned_cols=151 Identities=21% Similarity=0.202 Sum_probs=106.7
Q ss_pred CCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccC
Q 013423 166 LSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVG 245 (443)
Q Consensus 166 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~ 245 (443)
.+.++.+++.+... |..+ .++|++|++++|.+.+..+..|..+++|+.|++++|.+..++.
T Consensus 21 ~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~---------------- 81 (229)
T 3e6j_A 21 GTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV---------------- 81 (229)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------
T ss_pred CCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh----------------
Confidence 34555555554443 2222 2566677777766665556666666666666666666543321
Q ss_pred CchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchh
Q 013423 246 AETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 325 (443)
Q Consensus 246 ~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 325 (443)
..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..
T Consensus 82 ---------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 82 ---------GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp ---------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred ---------hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC
Confidence 33556778888888888888766666778888899999888887 45667788889999999999988877
Q ss_pred hhhcCCCCCCCEEeccCCCC
Q 013423 326 LGSFKPPRSLKLLDLHGGWL 345 (443)
Q Consensus 326 ~~~l~~~~~L~~L~l~~n~~ 345 (443)
+..+..+++|+.|++++|+.
T Consensus 152 ~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTTTTCTTCCEEECTTSCB
T ss_pred HHHHhCCCCCCEEEeeCCCc
Confidence 67777888999999999884
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=1.2e-15 Score=142.51 Aligned_cols=240 Identities=15% Similarity=0.132 Sum_probs=121.7
Q ss_pred CCCCcEEeecCCCCCChHHHHhccC-CCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcC-----
Q 013423 89 FRYLRSLNVADCRRVTSSALWALTG-MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSS----- 162 (443)
Q Consensus 89 ~~~L~~L~L~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~----- 162 (443)
+++++.|.++++ +.......+.. +++|++||+++| .+...... -+..+.++.+....+.+. ..+|..
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~-~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGK-AGTYPNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEE-EECCEEES-SSSSGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcc-eeEEecCc-cccccccccccccccccC---HHHhccccccc
Confidence 467888888875 45545555654 788999999887 44400000 001111223333333222 234445
Q ss_pred ---CCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCC-------CCC--CCCC
Q 013423 163 ---LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-------VTK--LPNI 230 (443)
Q Consensus 163 ---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-------l~~--l~~~ 230 (443)
+++|+.+++.. .+......+|..|++|+.+++.++.+....+.+|.++.++..+...... +.. +..+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 66666666665 5555545556666666666666665554445555555555555443311 111 1112
Q ss_pred CCCC--------------------------EEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCC
Q 013423 231 SSLE--------------------------CLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF 284 (443)
Q Consensus 231 ~~L~--------------------------~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 284 (443)
..|+ .+.+.++-.. .... .....+++|+.+++++|.++.....+|.+|
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~----~~~~--~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~ 249 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN----ADFK--LIRDYMPNLVSLDISKTNATTIPDFTFAQK 249 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH----HHHH--HHHHHCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH----HHHH--HHHHhcCCCeEEECCCCCcceecHhhhhCC
Confidence 2222 2222211000 0000 111235666666666666665555556666
Q ss_pred CCCCEEEeeCCCCChHHHHHhcCCCCCC-EEEecCcccCchhhhhcCCCCCCCEEeccCCC
Q 013423 285 KELIHLSLRNASLTDVSLHQLSSLSKLT-NLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 285 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~-~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 344 (443)
++|+.+++.+| ++.....+|.++++|+ .+++.+ .++.++..+|..|++|+.|++++|.
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence 66666666665 5544455566666666 666665 5555555566666666666665554
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=3.8e-15 Score=130.54 Aligned_cols=134 Identities=14% Similarity=0.166 Sum_probs=86.7
Q ss_pred CCCEEEecCCCCChhhH-HhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccc
Q 013423 165 NLSVLDLGGLPVTDLVL-RSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQ 243 (443)
Q Consensus 165 ~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~ 243 (443)
.+++|++++|.++...+ ..+..+++|++|++++|.+++..+..|..+++|+.|++++|.++.++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~--------------- 97 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ--------------- 97 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC---------------
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC---------------
Confidence 34555555555554321 22455555666666555555444445555555555555555444322
Q ss_pred cCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCc
Q 013423 244 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 323 (443)
Q Consensus 244 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~ 323 (443)
+ ..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+..
T Consensus 98 --------~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 98 --------H--KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp --------G--GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred --------H--hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 1 346677788888888888887767777888888888888888887767778888888888888887764
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=2.6e-15 Score=135.46 Aligned_cols=164 Identities=28% Similarity=0.370 Sum_probs=137.7
Q ss_pred CCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCC---CCCCCCCCEEecc
Q 013423 163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK---LPNISSLECLNLS 239 (443)
Q Consensus 163 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~---l~~~~~L~~L~l~ 239 (443)
+.++..++++++.+.+.. .+..+++|++|++++|.+.. ++ .+..+++|+.|++++|.+++ +..+++|+.|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC
Confidence 345666777888877653 56788999999999999874 34 68889999999999999887 4578999999999
Q ss_pred cccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCc
Q 013423 240 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA 319 (443)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 319 (443)
+|.+.+ ++ .+.. ++|+.|++++|.+++. ..+..+++|+.|++++|++++.. .+..+++|+.|++++|
T Consensus 94 ~N~l~~-----l~---~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 94 RNRLKN-----LN---GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp SSCCSC-----CT---TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTS
T ss_pred CCccCC-----cC---cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCC
Confidence 998875 33 2333 8999999999999973 35889999999999999998753 6889999999999999
Q ss_pred ccCchhhhhcCCCCCCCEEeccCCCC
Q 013423 320 VLTNSGLGSFKPPRSLKLLDLHGGWL 345 (443)
Q Consensus 320 ~i~~~~~~~l~~~~~L~~L~l~~n~~ 345 (443)
++++. ..+..+++|+.|++++|+.
T Consensus 161 ~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 161 EITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred cCcch--HHhccCCCCCEEeCCCCcc
Confidence 99987 5678889999999999984
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=2e-15 Score=142.91 Aligned_cols=160 Identities=22% Similarity=0.239 Sum_probs=78.0
Q ss_pred CCcEEecCCCCCCCHHHHHHhh-CCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEE
Q 013423 116 CLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 194 (443)
Q Consensus 116 ~L~~L~l~~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 194 (443)
.+++|++++| .++......+. .+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 40 ~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3455555554 44433233333 445555555555555444334444445555555555544444333344444444444
Q ss_pred ecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCC
Q 013423 195 LWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 274 (443)
Q Consensus 195 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~ 274 (443)
+++|.+.+..+..|..+++|+.|++++|.++.++. ..+ ..+..+++|+.|++++|.++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-------------------~~~---~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-------------------ELI---KDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-------------------GGT---C----CTTCCEEECCSSCCC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-------------------HHh---cCcccCCcCCEEECCCCCCC
Confidence 44444443334444444444444444444333220 000 01145677777777777777
Q ss_pred chhhhcccCCCC--CCEEEeeCCCCC
Q 013423 275 DATLFPLSTFKE--LIHLSLRNASLT 298 (443)
Q Consensus 275 ~~~~~~l~~~~~--L~~L~l~~n~i~ 298 (443)
...+..+..++. ++.|++++|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 655555666665 367777777654
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=8.7e-15 Score=129.14 Aligned_cols=152 Identities=20% Similarity=0.216 Sum_probs=89.8
Q ss_pred cEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCC
Q 013423 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT 222 (443)
Q Consensus 143 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 222 (443)
+.++.+++++... |..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|+.|++++|
T Consensus 22 ~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3455555554443 2211 256777777777766665566667777777777777776544455666777777777777
Q ss_pred CCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHH
Q 013423 223 GVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 302 (443)
Q Consensus 223 ~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~ 302 (443)
.++.++. ..+..+++|+.|++++|.++. .|..+..+++|+.|++++|++++..+
T Consensus 99 ~l~~l~~-------------------------~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 99 QLTVLPS-------------------------AVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp CCCCCCT-------------------------TTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred cCCccCh-------------------------hHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCH
Confidence 6654331 223345556666666665553 44455566666666666666655444
Q ss_pred HHhcCCCCCCEEEecCcccCc
Q 013423 303 HQLSSLSKLTNLSIRDAVLTN 323 (443)
Q Consensus 303 ~~l~~l~~L~~L~l~~n~i~~ 323 (443)
..+..+++|+.|++++|.++.
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBCT
T ss_pred HHHhCCCCCCEEEeeCCCccC
Confidence 455566666666666666553
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=5e-17 Score=162.24 Aligned_cols=206 Identities=20% Similarity=0.143 Sum_probs=113.3
Q ss_pred cCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCcc
Q 013423 112 TGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLE 191 (443)
Q Consensus 112 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 191 (443)
..+++|+.|++++| .++ ..+..++.+++|+.|++++|......+..+. .+...+..+..++.+++|+
T Consensus 346 ~~~~~L~~L~Ls~n-~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~-----------~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KST-VLQSELESCKELQELEPENKWCLLTIILLMR-----------ALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHH-HHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------HHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChh-hHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHH-----------hcccccCCHHHHHHHHhcc
Confidence 34566667777766 444 3355666666777766655431111111000 0012233344455555555
Q ss_pred EEE-ecCCCCCchhhH------hhc--CCCCCCEEEcCCCCCCCCC---CCCCCCEEecccccccCCchhhhhhHHHhcc
Q 013423 192 YLD-LWGSQVSNRGAA------VLK--MFPRLSFLNLAWTGVTKLP---NISSLECLNLSFIQQVGAETDLVLSLTALQN 259 (443)
Q Consensus 192 ~L~-l~~~~l~~~~~~------~l~--~l~~L~~L~l~~~~l~~l~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 259 (443)
.|+ ++.+.+.. ++. .+. ....|+.|++++|.+++++ .+++|+.|++++|.+.. +| ..+..
T Consensus 413 ~L~~l~~n~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~-----lp--~~~~~ 484 (567)
T 1dce_A 413 AVDPMRAAYLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-----LP--PALAA 484 (567)
T ss_dssp HHCGGGHHHHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC-----CC--GGGGG
T ss_pred cCcchhhcccch-hhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccc-----cc--hhhhc
Confidence 555 33322110 000 000 0124677777777666543 34556666666665542 45 45667
Q ss_pred CCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHH-HHHhcCCCCCCEEEecCcccCchhhhh---cCCCCCC
Q 013423 260 LNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNSGLGS---FKPPRSL 335 (443)
Q Consensus 260 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~---l~~~~~L 335 (443)
+++|+.|++++|.+++ +| .++.+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++..+.. +..+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 7777777777777776 44 6677777777777777777654 667777777777777777777653311 1125667
Q ss_pred CEEec
Q 013423 336 KLLDL 340 (443)
Q Consensus 336 ~~L~l 340 (443)
+.|++
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 76653
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=1.5e-15 Score=141.82 Aligned_cols=259 Identities=15% Similarity=0.129 Sum_probs=162.0
Q ss_pred CccEEEecCCCCCCHHHHHHhcC-CCCCcEEeecCCCCCC--------------------hHHHHhccC--------CCC
Q 013423 66 NAEAIELRGENSVDAEWMAYLGA-FRYLRSLNVADCRRVT--------------------SSALWALTG--------MTC 116 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~--------------------~~~~~~l~~--------~~~ 116 (443)
++++|.++++ +...-...+.. +++|++|+|++|. +. ..+..+|.+ |++
T Consensus 26 ~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 26 SITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred ceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcce-eEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 5777777775 33333344444 7778888888776 44 112233445 666
Q ss_pred CcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCC----CCChhhHHhccCCCCcc-
Q 013423 117 LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGL----PVTDLVLRSLQVLTKLE- 191 (443)
Q Consensus 117 L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~----~~~~~~~~~l~~l~~L~- 191 (443)
|+++++.+ .++.....+|.+|++|+.+++.++.+....+.+|..+.++..+..... ........++..+..|+
T Consensus 103 L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 103 LEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp CCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 66666665 344444455666666666666666665555555555555554444331 01111112334444454
Q ss_pred EEEecCCCCCchhhHhhc----CCCCCCEEEcCCCCCCC----C-CCCCCCCEEecccccccCCchhhhhhHHHhccCCC
Q 013423 192 YLDLWGSQVSNRGAAVLK----MFPRLSFLNLAWTGVTK----L-PNISSLECLNLSFIQQVGAETDLVLSLTALQNLNH 262 (443)
Q Consensus 192 ~L~l~~~~l~~~~~~~l~----~l~~L~~L~l~~~~l~~----l-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~ 262 (443)
.+.+... +.++..+. ...++..+.+.+.-... + ..+++|+.+++++|.+.. ++. ..|.+|.+
T Consensus 181 ~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-----I~~-~aF~~~~~ 251 (329)
T 3sb4_A 181 TIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-----IPD-FTFAQKKY 251 (329)
T ss_dssp EEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-----ECT-TTTTTCTT
T ss_pred eEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-----ecH-hhhhCCCC
Confidence 3333321 11222211 24455666655432111 1 136788888888776553 442 56888999
Q ss_pred CCEEEcCCCCCCchhhhcccCCCCCC-EEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEec
Q 013423 263 LERLNLEQTQVSDATLFPLSTFKELI-HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 340 (443)
Q Consensus 263 L~~L~l~~~~l~~~~~~~l~~~~~L~-~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l 340 (443)
|+.+++.++ +......+|.++++|+ .+.+.+ .++...+.+|.+|++|+.++++.|.++.++...|..+++|+.|+.
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999987 7776777789999999 999988 777777778999999999999999999998889999999999864
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=3.4e-16 Score=156.20 Aligned_cols=201 Identities=19% Similarity=0.134 Sum_probs=117.7
Q ss_pred cCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCC------------CCHHHHHHhhCCCCCcEEE-cccccCC
Q 013423 87 GAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVK------------VTDAGMKHLLSISTLEKLW-LSETGLT 153 (443)
Q Consensus 87 ~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~------------l~~~~~~~~~~l~~L~~L~-l~~~~~~ 153 (443)
..+++|+.|+|++|. ++ ..+..++++++|++|++++|.. ..+..+..+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~-L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-ST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHH-HH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhh-HH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 457889999999987 65 4677888999999999976521 1222334445555555555 3433322
Q ss_pred HHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCC----C
Q 013423 154 ADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----N 229 (443)
Q Consensus 154 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~----~ 229 (443)
... .+.+.+|.+... . ...|+.|++++|.+++ +|. ++.+++|+.|++++|.++.+| .
T Consensus 424 ~L~-----------~l~l~~n~i~~l-----~-~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~ 484 (567)
T 1dce_A 424 DLR-----------SKFLLENSVLKM-----E-YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAA 484 (567)
T ss_dssp HHH-----------HHHHHHHHHHHH-----H-HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGG
T ss_pred hhh-----------hhhhhccccccc-----C-ccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhc
Confidence 111 000111111110 0 0124445555554443 232 444455555555555544432 3
Q ss_pred CCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchh-hhcccCCCCCCEEEeeCCCCChHHH---HHh
Q 013423 230 ISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNASLTDVSL---HQL 305 (443)
Q Consensus 230 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~n~i~~~~~---~~l 305 (443)
+++|+.|++++|.+.+ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++..+ ..+
T Consensus 485 l~~L~~L~Ls~N~l~~-----lp---~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~ 556 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-----VD---GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 556 (567)
T ss_dssp CTTCCEEECCSSCCCC-----CG---GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH
T ss_pred CCCCCEEECCCCCCCC-----Cc---ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHH
Confidence 4555555555555543 22 4667888999999999888865 7888889999999999998876532 234
Q ss_pred cCCCCCCEEEe
Q 013423 306 SSLSKLTNLSI 316 (443)
Q Consensus 306 ~~l~~L~~L~l 316 (443)
..+++|+.|++
T Consensus 557 ~~lp~L~~L~l 567 (567)
T 1dce_A 557 EMLPSVSSILT 567 (567)
T ss_dssp HHCTTCSEEEC
T ss_pred HHCcccCccCC
Confidence 45788888864
No 121
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=133.83 Aligned_cols=194 Identities=18% Similarity=0.185 Sum_probs=120.9
Q ss_pred CCCCcEEEcccccCCHHHHHHhc-----CCCCCCEEEecCCCCChhhHHhcc-CCCCccEEEecCCCCCchhhHhhcCCC
Q 013423 139 ISTLEKLWLSETGLTADGIALLS-----SLQNLSVLDLGGLPVTDLVLRSLQ-VLTKLEYLDLWGSQVSNRGAAVLKMFP 212 (443)
Q Consensus 139 l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~l~~l~ 212 (443)
++.|+.|++++|.++......+. ..++|++|++++|.+++.....+. .+++|++|++++|.+++.....++..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~- 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL- 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH-
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH-
Confidence 46788888888888776554433 236788888888887765444442 34577788888877765544444210
Q ss_pred CCCEEEcCCCCCCCC-CCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchh----hhcccCCCCC
Q 013423 213 RLSFLNLAWTGVTKL-PNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT----LFPLSTFKEL 287 (443)
Q Consensus 213 ~L~~L~l~~~~l~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L 287 (443)
+ ...++|+.|++++|.+.......++ ..+..+++|++|++++|.+++.. +..+...++|
T Consensus 150 --------------L~~~~~~L~~L~Ls~n~l~~~~~~~l~--~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L 213 (372)
T 3un9_A 150 --------------LLHDQCQITTLRLSNNPLTAAGVAVLM--EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL 213 (372)
T ss_dssp --------------HHSTTCCCCEEECCSSCCHHHHHHHHH--HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred --------------HHhcCCccceeeCCCCCCChHHHHHHH--HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence 0 1123444444444444332233344 55677888888999888887755 3345567788
Q ss_pred CEEEeeCCCCChHHHH----HhcCCCCCCEEEecCcccCchhhhhcCCC---C--CCCEEe--ccCCCCCCHHH
Q 013423 288 IHLSLRNASLTDVSLH----QLSSLSKLTNLSIRDAVLTNSGLGSFKPP---R--SLKLLD--LHGGWLLTEDA 350 (443)
Q Consensus 288 ~~L~l~~n~i~~~~~~----~l~~l~~L~~L~l~~n~i~~~~~~~l~~~---~--~L~~L~--l~~n~~l~~~~ 350 (443)
++|++++|.+++.... .+...++|++|++++|.|++.+...+... . .|+.+. +.++. +++.+
T Consensus 214 ~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~-~~~~~ 286 (372)
T 3un9_A 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA-VSEYW 286 (372)
T ss_dssp CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC-----CHHHH
T ss_pred CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCc-cCHHH
Confidence 8899988888875433 34456888899998888888877655422 2 277776 66666 45443
No 122
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.50 E-value=5.8e-14 Score=132.78 Aligned_cols=110 Identities=25% Similarity=0.329 Sum_probs=58.9
Q ss_pred CCCcEEeecCCCCCChHHHHhccC-----CCCCcEEecCCCCCCCHHHHHHhh-CCCCCcEEEcccccCCHHHHHHhc--
Q 013423 90 RYLRSLNVADCRRVTSSALWALTG-----MTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTADGIALLS-- 161 (443)
Q Consensus 90 ~~L~~L~L~~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~-- 161 (443)
++|++|++++|. +++.....+.. .++|++|++++| .+++.....+. .+++|++|++++|.+++.....++
T Consensus 72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 567777777776 66555444432 256777777776 56655554443 345666666666666655444332
Q ss_pred ---CCCCCCEEEecCCCCChhhHH----hccCCCCccEEEecCCCCC
Q 013423 162 ---SLQNLSVLDLGGLPVTDLVLR----SLQVLTKLEYLDLWGSQVS 201 (443)
Q Consensus 162 ---~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~l~ 201 (443)
..++|++|++++|.+++.... .+..+++|++|++++|.+.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 334555555555555432221 2233444444444444443
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=1e-13 Score=113.52 Aligned_cols=128 Identities=26% Similarity=0.338 Sum_probs=70.5
Q ss_pred CCCccEEEecCCCCC-chhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCE
Q 013423 187 LTKLEYLDLWGSQVS-NRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLER 265 (443)
Q Consensus 187 l~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~ 265 (443)
.++|++|++++|.+. +.+|..+..+++|+.|++++|.++++ ..+..+++|+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------------~~~~~l~~L~~ 68 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---------------------------ANLPKLNKLKK 68 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---------------------------TTCCCCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---------------------------hhhhcCCCCCE
Confidence 355666666666665 44555555566666666666655432 12233455555
Q ss_pred EEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChH-HHHHhcCCCCCCEEEecCcccCchhh---hhcCCCCCCCEEecc
Q 013423 266 LNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTNSGL---GSFKPPRSLKLLDLH 341 (443)
Q Consensus 266 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~---~~l~~~~~L~~L~l~ 341 (443)
|++++|.+++..|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 69 L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 69 LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555555554444444555666666666665543 23455566666666666666655543 344455666666654
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=6.7e-14 Score=117.13 Aligned_cols=131 Identities=26% Similarity=0.307 Sum_probs=69.2
Q ss_pred CCccEEEecCCCCC-chhhHhhcCCCCCCEEEcCCCCCCC---CCCCCCCCEEecccccccCCchhhhhhHHHhccCCCC
Q 013423 188 TKLEYLDLWGSQVS-NRGAAVLKMFPRLSFLNLAWTGVTK---LPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHL 263 (443)
Q Consensus 188 ~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~~~l~~---l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L 263 (443)
++|++|++++|.+. +.+|..+..+++|+.|++++|.++. +..+++|+.|++++|.+.+. +| ..+..+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~----~~--~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG----LD--MLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC----CC--HHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH----HH--HHHhhCCCC
Confidence 44444444444443 2333334444444555544444432 23334444444444444331 23 344456677
Q ss_pred CEEEcCCCCCCchh-hhcccCCCCCCEEEeeCCCCChHHH---HHhcCCCCCCEEEecCcccCch
Q 013423 264 ERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNASLTDVSL---HQLSSLSKLTNLSIRDAVLTNS 324 (443)
Q Consensus 264 ~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l~~n~i~~~ 324 (443)
+.|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+...
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 77777777666532 2456666677777777766654433 3566666666666666665543
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=8e-14 Score=133.13 Aligned_cols=263 Identities=10% Similarity=0.079 Sum_probs=155.8
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
..++.+.+... +..--..+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .++.....+|.+|++|+.
T Consensus 113 ~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 113 KGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp SSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCE
T ss_pred CCccEEEECCc--cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCe
Confidence 45666666553 221112334444 5777777654 455555556664 577777765 344444456677777777
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCC
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 224 (443)
+++..+.+.......|. +.+|+.+.+.. .+......+|..+++|+.+.+..+ ++.....+|.+ .+|+.+.+..+ +
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-V 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-C
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-c
Confidence 77777766665555555 46777777763 355555566777777777777653 44344455555 56777777432 3
Q ss_pred C-----CCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCCh
Q 013423 225 T-----KLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 299 (443)
Q Consensus 225 ~-----~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~ 299 (443)
+ .|..|++|+.+.+.++.........++. ..|.+|++|+.+.+.+ .+......+|.+|++|+.+.+..+ ++.
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-YCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-TTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECH-HHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 2 2556777777777665443111111222 4566777777777764 355555556677777777777543 554
Q ss_pred HHHHHhcCCCCCCEEEecCcccCchhhhhcCCC-CCCCEEeccCCC
Q 013423 300 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGW 344 (443)
Q Consensus 300 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~-~~L~~L~l~~n~ 344 (443)
....+|.++ +|+.+.+.+|.+.......|..+ .+++.|.+-.+.
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 555566677 77777777776665555555555 356677665544
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=117.17 Aligned_cols=126 Identities=21% Similarity=0.246 Sum_probs=105.2
Q ss_pred CEEEcCCCCCCCCCC--CCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEe
Q 013423 215 SFLNLAWTGVTKLPN--ISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 292 (443)
Q Consensus 215 ~~L~l~~~~l~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 292 (443)
+.++++++.++.++. .++|+.|++++|.+.. +| ..+..+++|+.|++++|.+++..+..|..+++|++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~-----ip--~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTL-----VP--KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCS-----CC--GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCch-----hH--HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 456666666665542 3567777777777653 55 57788999999999999999977788999999999999
Q ss_pred eCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCC
Q 013423 293 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 347 (443)
Q Consensus 293 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~ 347 (443)
++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.|++++|+...
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9999998888889999999999999999998877778889999999999998543
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=1.6e-13 Score=117.42 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=102.3
Q ss_pred CEEEcCCCCCCCCCC--CCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEe
Q 013423 215 SFLNLAWTGVTKLPN--ISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 292 (443)
Q Consensus 215 ~~L~l~~~~l~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 292 (443)
+.++++++.++.++. .++++.|++++|.+.+ ++.-..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGR-----ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCS-----BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCc-----cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 456666666655542 2367777777776654 221013678899999999999999988888999999999999
Q ss_pred eCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCC
Q 013423 293 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 346 (443)
Q Consensus 293 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l 346 (443)
++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+..
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999999888777889999999999999999988888888999999999999853
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=2.8e-14 Score=146.77 Aligned_cols=163 Identities=16% Similarity=0.162 Sum_probs=86.1
Q ss_pred HhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCC
Q 013423 256 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 335 (443)
Q Consensus 256 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L 335 (443)
.+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.++.+ |..+..+++|
T Consensus 242 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L 318 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNL 318 (727)
T ss_dssp GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCC-CSSTTSCTTC
T ss_pred hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCcc-ChhhhcCCCc
Confidence 3446777888888888887 46677788888888888888887 4566778888888888888888755 5557778888
Q ss_pred CEEeccCCCCCCHHHHHHHHHhCCCceeeeeecccCCCCCCCCCCCCCCchhhhhhhhh----hcCCCCCCChhhHHhhh
Q 013423 336 KLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVK----QKQDPMPMSHSFLDQRL 411 (443)
Q Consensus 336 ~~L~l~~n~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~~~~l~~L~n----~l~~~~p~~~~~ld~~~ 411 (443)
+.|+|++|+ ++...+..+..... ..+..+ +.+|.+.+.+|..+..+....| ...+.+|..... .+.
T Consensus 319 ~~L~L~~N~-l~~~~p~~~~~~~~-~~~~l~------l~~N~l~~~~p~~l~~l~l~~n~~~~~~~~~l~~~~~~--~~~ 388 (727)
T 4b8c_D 319 QFLGVEGNP-LEKQFLKILTEKSV-TGLIFY------LRDNRPEIPLPHERRFIEINTDGEPQREYDSLQQSTEH--LAT 388 (727)
T ss_dssp CCEECTTSC-CCSHHHHHHHHHHH-HHHHHH------HHHCCCCCCCCCC------------------------------
T ss_pred cEEeCCCCc-cCCCChHHHhhcch-hhhHHh------hccCcccCcCccccceeEeecccccccccCCccccccc--hhh
Confidence 888888888 45444433322111 000001 3467778888887766543322 122333322100 134
Q ss_pred hhcHHHHHHhhcccccccCC
Q 013423 412 KYSREELLELQYSSLSLARP 431 (443)
Q Consensus 412 ~l~~L~~L~l~~n~~~~~~p 431 (443)
.+..++...+++|.+.+...
T Consensus 389 ~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 389 DLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp -------------CCCGGGC
T ss_pred cccccceeeeeccccccccC
Confidence 66777888889998876443
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=4.3e-14 Score=115.77 Aligned_cols=108 Identities=26% Similarity=0.239 Sum_probs=50.2
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEE
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 145 (443)
+++.|++++|......++..+..+++|++|++++|. ++.. ..+.++++|++|++++| .+++..+..+..+++|++|
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEE
Confidence 456666665542212334444555555555555554 4432 34445555555555555 3433223333344555555
Q ss_pred EcccccCCHH-HHHHhcCCCCCCEEEecCCCCC
Q 013423 146 WLSETGLTAD-GIALLSSLQNLSVLDLGGLPVT 177 (443)
Q Consensus 146 ~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 177 (443)
++++|.+++. .+..+..+++|++|++++|.++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 5555544442 1233444444444444444433
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=2.6e-14 Score=119.69 Aligned_cols=134 Identities=26% Similarity=0.325 Sum_probs=61.8
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
+++++|++++|......++..+..+++|++|++++|. ++.. ..+..+++|++|++++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N------------------- 81 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSEN------------------- 81 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESC-------------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCC-------------------
Confidence 3455555555532212333334445555555555554 4332 33444455555555554
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhh-HHhccCCCCccEEEecCCCCCchhh---HhhcCCCCCCEEEcC
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLV-LRSLQVLTKLEYLDLWGSQVSNRGA---AVLKMFPRLSFLNLA 220 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l~ 220 (443)
.+....+..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 82 ------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 82 ------RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp ------CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred ------cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 443322333333444444444444444421 1344555555555555555543322 245555555555555
Q ss_pred CCCCCC
Q 013423 221 WTGVTK 226 (443)
Q Consensus 221 ~~~l~~ 226 (443)
+|.+..
T Consensus 156 ~n~~~~ 161 (168)
T 2ell_A 156 DREDQE 161 (168)
T ss_dssp ETTSCB
T ss_pred CCChhh
Confidence 555443
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=1.7e-14 Score=148.46 Aligned_cols=176 Identities=19% Similarity=0.117 Sum_probs=91.8
Q ss_pred HHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCC
Q 013423 133 MKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFP 212 (443)
Q Consensus 133 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 212 (443)
+..+..++.|+.|++++|.+... +..+..+++|++|++++|.++. .+..+..+++|++|++++|.++ .+|..|+.++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 44566777788888887777643 4444577788888888887774 3666777888888888888777 5677777788
Q ss_pred CCCEEEcCCCCCCCC----CCCCCCCEEecccccccCCchhhhhhHHHhccCC-CCCEEEcCCCCCCchhhhcccCCCCC
Q 013423 213 RLSFLNLAWTGVTKL----PNISSLECLNLSFIQQVGAETDLVLSLTALQNLN-HLERLNLEQTQVSDATLFPLSTFKEL 287 (443)
Q Consensus 213 ~L~~L~l~~~~l~~l----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~-~L~~L~l~~~~l~~~~~~~l~~~~~L 287 (443)
+|+.|++++|.++.+ ..+++|+.|+|++|.+.+. +| ..+.... ....+++++|.+++..|. .|
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~----~p--~~~~~~~~~~~~l~l~~N~l~~~~p~------~l 361 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ----FL--KILTEKSVTGLIFYLRDNRPEIPLPH------ER 361 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH----HH--HHHHHHHHHHHHHHHHHCCCCCCCCC------C-
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC----Ch--HHHhhcchhhhHHhhccCcccCcCcc------cc
Confidence 888888888877653 3567777777777777653 33 2222211 112366777777664443 45
Q ss_pred CEEEeeCC--------CCChHHHHHhcCCCCCCEEEecCcccCc
Q 013423 288 IHLSLRNA--------SLTDVSLHQLSSLSKLTNLSIRDAVLTN 323 (443)
Q Consensus 288 ~~L~l~~n--------~i~~~~~~~l~~l~~L~~L~l~~n~i~~ 323 (443)
+.|+++.| .+.+..+..+..+..+....+++|.+.+
T Consensus 362 ~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 362 RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ----------------------------------------CCCG
T ss_pred ceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 66666665 1222222333445555566666665543
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.38 E-value=1.2e-12 Score=124.90 Aligned_cols=238 Identities=15% Similarity=0.154 Sum_probs=181.9
Q ss_pred cCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCC
Q 013423 87 GAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNL 166 (443)
Q Consensus 87 ~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 166 (443)
..+..++.+.+.+. ++.....+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+......+|..+++|
T Consensus 110 ~~~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 110 EILKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp EECSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred EecCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccC
Confidence 34578888888775 566666777776 7999999875 555556667774 699999975 6666666788899999
Q ss_pred CEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCC-----CCCCCCCCEEecccc
Q 013423 167 SVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNLSFI 241 (443)
Q Consensus 167 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~~~~L~~L~l~~~ 241 (443)
+.+++..+.+......+|. +.+|+.+.+..+ +......+|.++++|+.+.+..+ ++. |.. .+|+.+.+..+
T Consensus 183 ~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~ 258 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG 258 (401)
T ss_dssp CEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT
T ss_pred CeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC
Confidence 9999998888877666666 689999999754 66566778889999999999865 332 445 68999988543
Q ss_pred cccCCchhhhhhHHHhccCCCCCEEEcCCCCCC-----chhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEe
Q 013423 242 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVS-----DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 316 (443)
Q Consensus 242 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~-----~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 316 (443)
+.. ++. .+|.+|++|+.+.+.++.+. ......|.+|++|+.+.+.. .++.....+|.+|++|+.+.+
T Consensus 259 -i~~-----I~~-~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 259 -VTN-----IAS-RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp -CCE-----ECT-TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred -ccE-----ECh-hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 221 322 57888999999999887654 34556688999999999984 577666678889999999999
Q ss_pred cCcccCchhhhhcCCCCCCCEEeccCCCC
Q 013423 317 RDAVLTNSGLGSFKPPRSLKLLDLHGGWL 345 (443)
Q Consensus 317 ~~n~i~~~~~~~l~~~~~L~~L~l~~n~~ 345 (443)
..+ ++.++..+|..+ +|+.+++.+|..
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 665 777777888888 999999998863
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=1.9e-12 Score=109.19 Aligned_cols=126 Identities=21% Similarity=0.215 Sum_probs=98.1
Q ss_pred CEEEcCCCCCCCCC--CCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEe
Q 013423 215 SFLNLAWTGVTKLP--NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 292 (443)
Q Consensus 215 ~~L~l~~~~l~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 292 (443)
+.++++++.++.++ ..++|+.|++++|.+.+ ++. ..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~-----~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-----LPH-GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC-----CCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccE-----eCH-HHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 45555555555543 23566677777666553 221 34677889999999999998866667889999999999
Q ss_pred eCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCC
Q 013423 293 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 346 (443)
Q Consensus 293 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l 346 (443)
++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+..
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 999999777777889999999999999999887766778899999999999854
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=1.1e-12 Score=112.27 Aligned_cols=130 Identities=17% Similarity=0.258 Sum_probs=90.0
Q ss_pred CEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhH-hhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccC
Q 013423 167 SVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAA-VLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVG 245 (443)
Q Consensus 167 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~ 245 (443)
++++++++.+... |..+ ..++++|++++|.+.+..+. .+..+++|+.|++++|.++++
T Consensus 11 ~~l~~s~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------------ 69 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI------------------ 69 (192)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB------------------
T ss_pred CEEEcCCCCcCcC-ccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc------------------
Confidence 4556666655443 3222 12566666666655533322 244555555555555544432
Q ss_pred CchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCch
Q 013423 246 AETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 324 (443)
Q Consensus 246 ~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~ 324 (443)
.| ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.++..
T Consensus 70 -----~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 70 -----EP--NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp -----CT--TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred -----CH--hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 23 4567788999999999999987777788999999999999999988888888999999999999988754
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=8.1e-13 Score=111.41 Aligned_cols=131 Identities=21% Similarity=0.192 Sum_probs=79.7
Q ss_pred cCCCCccEEEecCCCCCchhhHhhcCC-CCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCC
Q 013423 185 QVLTKLEYLDLWGSQVSNRGAAVLKMF-PRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHL 263 (443)
Q Consensus 185 ~~l~~L~~L~l~~~~l~~~~~~~l~~l-~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L 263 (443)
..+++|++|++++|.+.. ++. +..+ ++|+.|++++|.++++ ..+..+++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~---------------------------~~l~~l~~L 66 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL---------------------------DGFPLLRRL 66 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE---------------------------CCCCCCSSC
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc---------------------------cccccCCCC
Confidence 445566666666665552 222 2222 2555555555554421 234456677
Q ss_pred CEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHH-HHhcCCCCCCEEEecCcccCchhhh---hcCCCCCCCEEe
Q 013423 264 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGLG---SFKPPRSLKLLD 339 (443)
Q Consensus 264 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~---~l~~~~~L~~L~ 339 (443)
+.|++++|.+++..+..+..+++|+.|++++|.+++... ..+..+++|+.|++++|.++..... .+..+++|+.|+
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeC
Confidence 777777777776433444677777777777777764322 2566777788888888877755322 355677888888
Q ss_pred ccCCC
Q 013423 340 LHGGW 344 (443)
Q Consensus 340 l~~n~ 344 (443)
+++|.
T Consensus 147 ~~~n~ 151 (176)
T 1a9n_A 147 FQKVK 151 (176)
T ss_dssp TEECC
T ss_pred CCcCC
Confidence 88877
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=4.3e-12 Score=107.05 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=65.2
Q ss_pred CCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEE
Q 013423 188 TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLN 267 (443)
Q Consensus 188 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~ 267 (443)
++|++|++++|.+.+..+..+..+++|+.|++++|.++.++ + ..+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------------~--~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-----------------------D--GVFDKLTKLTILY 82 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-----------------------T--TTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-----------------------h--hHccCCCccCEEE
Confidence 45555666555555443344455555555555555544322 0 2234556666677
Q ss_pred cCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCch
Q 013423 268 LEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 324 (443)
Q Consensus 268 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~ 324 (443)
+++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 766666665555556667777777777776655544556667777777777766654
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=4.7e-12 Score=108.32 Aligned_cols=127 Identities=20% Similarity=0.237 Sum_probs=81.9
Q ss_pred CEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCC
Q 013423 167 SVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGA 246 (443)
Q Consensus 167 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~ 246 (443)
+.++++++.++.. |..+ .++|++|++++|.++ .+|..|..+++|+.|++++|.++.++
T Consensus 13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~------------------ 70 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLS------------------ 70 (193)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCC------------------
T ss_pred CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeC------------------
Confidence 3455555555443 2222 245666666666665 34455666666666666666555432
Q ss_pred chhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccC
Q 013423 247 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 322 (443)
Q Consensus 247 ~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~ 322 (443)
+ ..+..+++|++|++++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 71 -----~--~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 71 -----N--QSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp -----T--TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred -----H--hHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 1 33556677777788777777766667777788888888888877665556777888888888888765
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=6.2e-14 Score=120.77 Aligned_cols=110 Identities=20% Similarity=0.215 Sum_probs=61.1
Q ss_pred hhcCCCCCCEEEcCCCCCCCCC---CCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccC
Q 013423 207 VLKMFPRLSFLNLAWTGVTKLP---NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST 283 (443)
Q Consensus 207 ~l~~l~~L~~L~l~~~~l~~l~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 283 (443)
.+..+++|+.|++++|.++.++ .+++|+.|++++|.+.. +| ..+..+++|+.|++++|.+++ .+ .+..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~-----l~--~~~~~~~~L~~L~L~~N~l~~-l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK-----IE--NLDAVADTLEELWISYNQIAS-LS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS-----CS--SHHHHHHHCSEEEEEEEECCC-HH-HHHH
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc-----cc--chhhcCCcCCEEECcCCcCCc-CC-cccc
Confidence 5555556666666555544433 23445555555554432 23 223334566666666666665 22 4556
Q ss_pred CCCCCEEEeeCCCCChHHH-HHhcCCCCCCEEEecCcccCchh
Q 013423 284 FKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSG 325 (443)
Q Consensus 284 ~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~i~~~~ 325 (443)
+++|+.|++++|.+++..+ ..+..+++|++|++++|.+++..
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 6666666666666664332 45666666666666666665553
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=4.4e-12 Score=106.85 Aligned_cols=136 Identities=16% Similarity=0.211 Sum_probs=98.8
Q ss_pred HhcCCCCCCEEEecCCCCChhhHHhccCC-CCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEe
Q 013423 159 LLSSLQNLSVLDLGGLPVTDLVLRSLQVL-TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLN 237 (443)
Q Consensus 159 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~ 237 (443)
.+.++++|+.|++++|.+... + .+..+ ++|++|++++|.+++. ..+..+++|+.|++++|.+++++.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-------- 81 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE-------- 81 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS--------
T ss_pred hcCCcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc--------
Confidence 345788999999999999865 3 34444 4999999999999754 566777777777777776654320
Q ss_pred cccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhh--cccCCCCCCEEEeeCCCCChHHHH---HhcCCCCCC
Q 013423 238 LSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF--PLSTFKELIHLSLRNASLTDVSLH---QLSSLSKLT 312 (443)
Q Consensus 238 l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~--~l~~~~~L~~L~l~~n~i~~~~~~---~l~~l~~L~ 312 (443)
..+..+++|+.|++++|.+.+ .+. .+..+++|+.|++++|.++..... .+..+++|+
T Consensus 82 -----------------~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 82 -----------------GLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR 143 (176)
T ss_dssp -----------------CHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred -----------------chhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccc
Confidence 223567788888888888865 333 677888888888888887643221 467788888
Q ss_pred EEEecCcccCch
Q 013423 313 NLSIRDAVLTNS 324 (443)
Q Consensus 313 ~L~l~~n~i~~~ 324 (443)
.|++++|.+...
T Consensus 144 ~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 144 VLDFQKVKLKER 155 (176)
T ss_dssp EETTEECCHHHH
T ss_pred eeCCCcCCHHHH
Confidence 888888876554
No 140
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.25 E-value=2.3e-11 Score=100.46 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=95.0
Q ss_pred CCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCC-CChHHHHHhcCC----CCCCEEEecCcc-cCchhhhhcCCCCC
Q 013423 261 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSL----SKLTNLSIRDAV-LTNSGLGSFKPPRS 334 (443)
Q Consensus 261 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~l----~~L~~L~l~~n~-i~~~~~~~l~~~~~ 334 (443)
..|++||+++|.+++.....+..+++|++|++++|. +++.....++.+ ++|++|++++|. ||+.+...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999999988889999999999999996 999988888875 489999999985 99999999999999
Q ss_pred CCEEeccCCCCCCHHH--HHHHHHhCCCceeee
Q 013423 335 LKLLDLHGGWLLTEDA--ILQFCKMHPRIEVWH 365 (443)
Q Consensus 335 L~~L~l~~n~~l~~~~--~~~~~~~~~~l~~~~ 365 (443)
|++|++++|+.+++.. ...+.+..|.+++..
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~ 173 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKL 173 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEECCCCCCCCchHHHHHHHHHHCCCcEEEe
Confidence 9999999999999865 677889999999863
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.25 E-value=5.6e-14 Score=121.04 Aligned_cols=129 Identities=20% Similarity=0.243 Sum_probs=89.6
Q ss_pred hccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCCCCC----CCCCCEEecccccccCCchhhhhhHHHhc
Q 013423 183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN----ISSLECLNLSFIQQVGAETDLVLSLTALQ 258 (443)
Q Consensus 183 ~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~----~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 258 (443)
.+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|.++.++. +++|+.|++++|.+.+ + +.+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-----l---~~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-----L---SGIE 112 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-----H---HHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-----C---Cccc
Confidence 55566666666666666654 34 55666667777777766666542 3677788888777664 3 3466
Q ss_pred cCCCCCEEEcCCCCCCchhh-hcccCCCCCCEEEeeCCCCChHHHH----------HhcCCCCCCEEEecCcccCc
Q 013423 259 NLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDVSLH----------QLSSLSKLTNLSIRDAVLTN 323 (443)
Q Consensus 259 ~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~i~~~~~~----------~l~~l~~L~~L~l~~n~i~~ 323 (443)
.+++|+.|++++|.+++... ..+..+++|+.|++++|.+++..|. .+..+++|+.|+ ++.++.
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 77889999999999987443 4688899999999999988765443 356777888776 555543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.18 E-value=4e-11 Score=100.21 Aligned_cols=101 Identities=23% Similarity=0.242 Sum_probs=82.6
Q ss_pred CCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEec
Q 013423 261 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 340 (443)
Q Consensus 261 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l 340 (443)
++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 67899999999998877888889999999999999998777777889999999999999999887777888899999999
Q ss_pred cCCCCCC----HHHHHHHHHhCCCc
Q 013423 341 HGGWLLT----EDAILQFCKMHPRI 361 (443)
Q Consensus 341 ~~n~~l~----~~~~~~~~~~~~~l 361 (443)
++|+... -.++..|....+..
T Consensus 110 ~~N~~~c~c~~l~~l~~~l~~~~~~ 134 (170)
T 3g39_A 110 LNNPWDCACSDILYLSRWISQHPGL 134 (170)
T ss_dssp CSSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred CCCCCCCCchhHHHHHHHHHhCcce
Confidence 9998432 23455555555543
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.16 E-value=2.1e-11 Score=116.68 Aligned_cols=266 Identities=14% Similarity=0.131 Sum_probs=134.4
Q ss_pred CCCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHH-----------
Q 013423 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAG----------- 132 (443)
Q Consensus 64 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~----------- 132 (443)
|.+|+.+.+..+ +..--..+|.+|.+|+.+++..+ ++..+..++.++.+|+.+.+..+ +....
T Consensus 70 c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 70 CRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp CTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCCCSE
T ss_pred CCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc--eeeecceeeecccccc
Confidence 457888888654 22212245777888888888654 45445556667777776655432 11111
Q ss_pred -----------HHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCC
Q 013423 133 -----------MKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS 201 (443)
Q Consensus 133 -----------~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 201 (443)
..+|.++.+|+.+.+..+ +.......|..+.+|+.+.+..+ +......++..+..|+.+.+..+...
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~ 221 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY 221 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE
Confidence 223444555555555432 22222334445555555554432 22222233444444444433322110
Q ss_pred chhhHhhcCCCCCCEEEcCCCC--C--CCCCCCCCCCEEeccccccc-CC--------------chhhhhhHHHhccCCC
Q 013423 202 NRGAAVLKMFPRLSFLNLAWTG--V--TKLPNISSLECLNLSFIQQV-GA--------------ETDLVLSLTALQNLNH 262 (443)
Q Consensus 202 ~~~~~~l~~l~~L~~L~l~~~~--l--~~l~~~~~L~~L~l~~~~~~-~~--------------~~~~~~~l~~~~~~~~ 262 (443)
+........+|+.+.+.... + ..+..+..++.+.+..+... +. ....++. ..+..+.+
T Consensus 222 --i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~ 298 (394)
T 4fs7_A 222 --LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSS 298 (394)
T ss_dssp --ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTT
T ss_pred --eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc-cccccccc
Confidence 01111122334444333211 0 01334445555554433211 00 0001111 34566777
Q ss_pred CCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccC
Q 013423 263 LERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 342 (443)
Q Consensus 263 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~ 342 (443)
|+.+.+.++ +......+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++.++..+|..|++|+.+++..
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 777777654 44444555777777887777643 55455557777778888877665 6666666777777888877754
Q ss_pred C
Q 013423 343 G 343 (443)
Q Consensus 343 n 343 (443)
+
T Consensus 376 ~ 376 (394)
T 4fs7_A 376 R 376 (394)
T ss_dssp G
T ss_pred C
Confidence 3
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=6.6e-11 Score=99.25 Aligned_cols=85 Identities=22% Similarity=0.270 Sum_probs=73.7
Q ss_pred CCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEec
Q 013423 261 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 340 (443)
Q Consensus 261 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l 340 (443)
++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 67889999999988877778889999999999999998766666788999999999999999886666888899999999
Q ss_pred cCCCC
Q 013423 341 HGGWL 345 (443)
Q Consensus 341 ~~n~~ 345 (443)
++|+.
T Consensus 113 ~~N~~ 117 (174)
T 2r9u_A 113 YNNPW 117 (174)
T ss_dssp CSSCB
T ss_pred CCCCc
Confidence 99984
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.09 E-value=1.3e-09 Score=102.04 Aligned_cols=152 Identities=21% Similarity=0.255 Sum_probs=103.2
Q ss_pred hhHhhcCCCCCCEEEcCCCC-C--CCCCCCCCCCEEecccccccCCchhhhhhHHHh--ccCCCCCEEEcCCC--CC-Cc
Q 013423 204 GAAVLKMFPRLSFLNLAWTG-V--TKLPNISSLECLNLSFIQQVGAETDLVLSLTAL--QNLNHLERLNLEQT--QV-SD 275 (443)
Q Consensus 204 ~~~~l~~l~~L~~L~l~~~~-l--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~--~~~~~L~~L~l~~~--~l-~~ 275 (443)
+...+..+++|+.|+++++. + ..+ .+++|+.|++..|.+... .+ ..+ ..+++|++|+|+.+ .. .+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~---~l---~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDS---VV---EDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHH---HH---HHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred HHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChH---HH---HHHHHccCCCCcEEEEeccccccccc
Confidence 33445566777777776552 1 122 267888888887765432 11 222 37899999998631 11 11
Q ss_pred h----hhhcc--cCCCCCCEEEeeCCCCChHHHHHhc---CCCCCCEEEecCcccCchhhhhcC----CCCCCCEEeccC
Q 013423 276 A----TLFPL--STFKELIHLSLRNASLTDVSLHQLS---SLSKLTNLSIRDAVLTNSGLGSFK----PPRSLKLLDLHG 342 (443)
Q Consensus 276 ~----~~~~l--~~~~~L~~L~l~~n~i~~~~~~~l~---~l~~L~~L~l~~n~i~~~~~~~l~----~~~~L~~L~l~~ 342 (443)
. ....+ ..+++|+.|++.+|.+++..+..+. .+++|++|+++.|.+++.+...+. .+++|+.|++++
T Consensus 237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 1 11122 2579999999999999876555554 578999999999999987665443 358999999999
Q ss_pred CCCCCHHHHHHHHHhCCCceee
Q 013423 343 GWLLTEDAILQFCKMHPRIEVW 364 (443)
Q Consensus 343 n~~l~~~~~~~~~~~~~~l~~~ 364 (443)
|. +++..+..+.+.. .+++.
T Consensus 317 n~-i~d~~~~~l~~al-g~~~~ 336 (362)
T 2ra8_A 317 NY-LSDEMKKELQKSL-PMKID 336 (362)
T ss_dssp BB-CCHHHHHHHHHHC-CSEEE
T ss_pred Cc-CCHHHHHHHHHHc-CCEEE
Confidence 98 8999999988865 35543
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.08 E-value=2.6e-10 Score=95.23 Aligned_cols=104 Identities=17% Similarity=0.228 Sum_probs=75.3
Q ss_pred CEEEcCCCCCCCCCC--CCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEe
Q 013423 215 SFLNLAWTGVTKLPN--ISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 292 (443)
Q Consensus 215 ~~L~l~~~~l~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 292 (443)
+.++++++.++.++. .++|+.|++++|.+.+. .+ ..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 12 ~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~----~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKL----EP--GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCC----CT--TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCcc----Ch--hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 455555555555442 34566666666665542 22 45677888899999998888766666788889999999
Q ss_pred eCCCCChHHHHHhcCCCCCCEEEecCcccCch
Q 013423 293 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 324 (443)
Q Consensus 293 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~ 324 (443)
++|++++..+..+..+++|++|++++|.++..
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99988876666788888999999999887755
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.05 E-value=5.6e-10 Score=106.69 Aligned_cols=261 Identities=13% Similarity=0.139 Sum_probs=165.6
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCC--CCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCc
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCR--RVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~ 143 (443)
.|+.+.+... ++.--..+|.+|.+|+.+.+..+. .++..+..+|..|.+|+.+.+..+ ++.....+|..+.+|+
T Consensus 65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCC
T ss_pred cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccc
Confidence 4888888764 322222567888899998887541 255555667778888888877653 4444455677788888
Q ss_pred EEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCC
Q 013423 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223 (443)
Q Consensus 144 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 223 (443)
.+.+... +.......+..+..|+.+.+..+ +......+|. ...|+.+.+.... ......+|..+.++.........
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSS
T ss_pred cccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcc-cccccchhhhccccceecccccc
Confidence 8888643 33344456667778888777643 3333333443 3456666665432 22333445555555544332211
Q ss_pred C-----------------------------------------CCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCC
Q 013423 224 V-----------------------------------------TKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNH 262 (443)
Q Consensus 224 l-----------------------------------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~ 262 (443)
. ..+..+..|+.+.+...... +.. ..+.++..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~------I~~-~aF~~c~~ 289 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS------IGT-GAFMNCPA 289 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE------ECT-TTTTTCTT
T ss_pred cccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce------ecC-cccccccc
Confidence 1 11456677777777654221 111 45677888
Q ss_pred CCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccC
Q 013423 263 LERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 342 (443)
Q Consensus 263 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~ 342 (443)
|+.+.+.. .+......+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++.++..+|..|++|+.+++.+
T Consensus 290 L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 290 LQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred cccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 88888864 455545566788899999998764 55555567888999999999654 6667777888899999999887
Q ss_pred CC
Q 013423 343 GW 344 (443)
Q Consensus 343 n~ 344 (443)
+.
T Consensus 367 ~~ 368 (394)
T 4gt6_A 367 SR 368 (394)
T ss_dssp CH
T ss_pred ce
Confidence 64
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=6.2e-10 Score=93.28 Aligned_cols=104 Identities=14% Similarity=0.194 Sum_probs=77.6
Q ss_pred CEEEcCCCCCCCCCC--CCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEe
Q 013423 215 SFLNLAWTGVTKLPN--ISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 292 (443)
Q Consensus 215 ~~L~l~~~~l~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 292 (443)
+.++++++.+..++. .++|+.|++++|.+.+. .| ..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~----~~--~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKL----EP--GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCC----CT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCCccCCCcCCCCcEEEeCCCCcccc----CH--HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 455666665555442 35666777776666542 23 45778889999999999998866666788999999999
Q ss_pred eCCCCChHHHHHhcCCCCCCEEEecCcccCch
Q 013423 293 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 324 (443)
Q Consensus 293 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~ 324 (443)
++|++++..+..+..+++|++|++++|.+...
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99999876666688899999999999987744
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.95 E-value=1.7e-09 Score=91.52 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=68.9
Q ss_pred HHhccCCCCCEEEcCCCCCCchhhhcc----cCCCCCCEEEeeCCCCChHH----HHHhcCCCCCCEEEe--cCcccCch
Q 013423 255 TALQNLNHLERLNLEQTQVSDATLFPL----STFKELIHLSLRNASLTDVS----LHQLSSLSKLTNLSI--RDAVLTNS 324 (443)
Q Consensus 255 ~~~~~~~~L~~L~l~~~~l~~~~~~~l----~~~~~L~~L~l~~n~i~~~~----~~~l~~l~~L~~L~l--~~n~i~~~ 324 (443)
..+...++|++|++++|.+.+.....+ ...++|++|++++|.+++.. ...+...++|++|++ ++|.+++.
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 566777888888888888887654443 45578888888888888764 344566778888998 77888887
Q ss_pred hhhhcC----CCCCCCEEeccCCCCCCHH
Q 013423 325 GLGSFK----PPRSLKLLDLHGGWLLTED 349 (443)
Q Consensus 325 ~~~~l~----~~~~L~~L~l~~n~~l~~~ 349 (443)
+...+. ..++|++|++++|. +++.
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~-i~~~ 166 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQ-QGPR 166 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSS-HHHH
T ss_pred HHHHHHHHHHhCCCcCEEeccCCC-CChH
Confidence 654433 45789999999888 5544
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=1.9e-09 Score=101.08 Aligned_cols=85 Identities=12% Similarity=0.175 Sum_probs=53.4
Q ss_pred cCCCCCEEEcCCCCCCchhhhccc---CCCCCCEEEeeCCCCChHHHHHh----cCCCCCCEEEecCcccCchhhhhcCC
Q 013423 259 NLNHLERLNLEQTQVSDATLFPLS---TFKELIHLSLRNASLTDVSLHQL----SSLSKLTNLSIRDAVLTNSGLGSFKP 331 (443)
Q Consensus 259 ~~~~L~~L~l~~~~l~~~~~~~l~---~~~~L~~L~l~~n~i~~~~~~~l----~~l~~L~~L~l~~n~i~~~~~~~l~~ 331 (443)
.+++|+.|++.+|.+.+..+..++ .+++|++|+++.|.+++..+..+ ..+++|+.|++++|.+++.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 356677777777766654444333 35677777777777776544443 33577888888877777776655543
Q ss_pred CCCCCEEeccCCC
Q 013423 332 PRSLKLLDLHGGW 344 (443)
Q Consensus 332 ~~~L~~L~l~~n~ 344 (443)
.- ...+++++++
T Consensus 330 al-g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL-PMKIDVSDSQ 341 (362)
T ss_dssp HC-CSEEECCSBC
T ss_pred Hc-CCEEEecCCc
Confidence 11 3557777766
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.93 E-value=7e-10 Score=106.01 Aligned_cols=238 Identities=14% Similarity=0.144 Sum_probs=127.1
Q ss_pred HHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCC
Q 013423 84 AYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSL 163 (443)
Q Consensus 84 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 163 (443)
.+|.+|.+|+.+.+..+ ++..+..+|.+|.+|+.+++..+ ++..+..+|.++..|+.+.+..+ +......+|..+
T Consensus 65 ~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 45778999999999764 67667778999999999999764 45444567788888887766533 222223334333
Q ss_pred CCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCC--CC--CCCCC---------
Q 013423 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG--VT--KLPNI--------- 230 (443)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~--l~--~l~~~--------- 230 (443)
..+...... ........+|..+++|+.+.+..+. ......+|.++.+|+.+.+..+- +. .+..+
T Consensus 140 ~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 140 DFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCC
T ss_pred cccccccCc--cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecC
Confidence 322222111 1111222345555556555554332 22233444555555555554331 00 12233
Q ss_pred -------------CCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCC
Q 013423 231 -------------SSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 297 (443)
Q Consensus 231 -------------~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i 297 (443)
.+|+.+.+..... .+.. ..+..+..++.+.+..+.. ......+..+..++.+......+
T Consensus 217 ~~~~~i~~~~~~~~~l~~i~ip~~~~------~i~~-~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 217 NSLYYLGDFALSKTGVKNIIIPDSFT------ELGK-SVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp TTCCEECTTTTTTCCCCEEEECTTCC------EECS-STTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE
T ss_pred CCceEeehhhcccCCCceEEECCCce------eccc-ccccccccceeEEcCCCcc-eeeccccccccccceeccCceee
Confidence 3455555443211 1111 3466778888888876532 22333455566666665555433
Q ss_pred ChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEecc
Q 013423 298 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 341 (443)
Q Consensus 298 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~ 341 (443)
.+ ..+..+.+|+.+.+.++ ++.++..+|..|.+|+.+++.
T Consensus 289 ~~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 289 PE---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp CT---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred cc---ccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 22 24455566666666543 444444555556666666664
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.93 E-value=1.5e-09 Score=101.80 Aligned_cols=105 Identities=19% Similarity=0.172 Sum_probs=86.4
Q ss_pred EEecccc-cccCCchhhhhhHHHhccCCCCCEEEcCC-CCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCC
Q 013423 235 CLNLSFI-QQVGAETDLVLSLTALQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT 312 (443)
Q Consensus 235 ~L~l~~~-~~~~~~~~~~~~l~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 312 (443)
.++++++ .+.. +| . +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|++++..+..|..+++|+
T Consensus 12 ~v~~~~~n~l~~-----ip--~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 12 GLRCTRDGALDS-----LH--H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp CEECCSSCCCTT-----TT--T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred EEEcCCCCCCCc-----cC--C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 3455554 4432 66 4 77888999999996 999987778899999999999999999988888899999999
Q ss_pred EEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCH
Q 013423 313 NLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE 348 (443)
Q Consensus 313 ~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~ 348 (443)
.|+|++|++++..+..+..++ |+.|++.+|+...+
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred EEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 999999999988666666554 99999999985433
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.90 E-value=2.3e-09 Score=88.51 Aligned_cols=84 Identities=20% Similarity=0.407 Sum_probs=47.4
Q ss_pred CccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCC----CCCcEEecCCCCCCCHHHHHHhhCCCC
Q 013423 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGM----TCLKELDLSRCVKVTDAGMKHLLSIST 141 (443)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~~l~~~~~~~~~~l~~ 141 (443)
.|++||+++|. +++.-...+..|++|++|+|++|..+++.+...++.+ ++|++|++++|..+|+.+...+..+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45666666654 4444334455566666666666655566555555543 356666666655556555555555555
Q ss_pred CcEEEcccc
Q 013423 142 LEKLWLSET 150 (443)
Q Consensus 142 L~~L~l~~~ 150 (443)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 665555555
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.90 E-value=3.7e-09 Score=89.46 Aligned_cols=128 Identities=15% Similarity=0.087 Sum_probs=84.0
Q ss_pred HHhccCCCCccEEEecCC-CCCchhhHhhcCCCCCCEEEcCCCCCCCCCCCCCCCEEecccccccCCchhhhhhHHHhcc
Q 013423 181 LRSLQVLTKLEYLDLWGS-QVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQN 259 (443)
Q Consensus 181 ~~~l~~l~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 259 (443)
...+...++|++|++++| .+.......+... +...++|+.|++++|.+.+.+...+. ..+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~---------------L~~~~~L~~L~Ls~n~i~~~g~~~l~--~~L~~ 91 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEA---------------LKTNTYVKKFSIVGTRSNDPVAFALA--EMLKV 91 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHH---------------HTTCCSCCEEECTTSCCCHHHHHHHH--HHHHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHH---------------HHhCCCcCEEECcCCCCChHHHHHHH--HHHHh
Confidence 445566777777777777 6664333322210 12233445555555554433333344 56777
Q ss_pred CCCCCEEEcCCCCCCchhhh----cccCCCCCCEEEe--eCCCCChHHH----HHhcCCCCCCEEEecCcccCchh
Q 013423 260 LNHLERLNLEQTQVSDATLF----PLSTFKELIHLSL--RNASLTDVSL----HQLSSLSKLTNLSIRDAVLTNSG 325 (443)
Q Consensus 260 ~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~L~l--~~n~i~~~~~----~~l~~l~~L~~L~l~~n~i~~~~ 325 (443)
.+.|++|++++|.+++.... .+...++|++|++ ++|.+++... ..+...++|++|++++|.++..+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 78899999999999886543 4556788999999 8899987644 34556689999999999887654
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.81 E-value=7.9e-09 Score=98.68 Aligned_cols=262 Identities=12% Similarity=0.101 Sum_probs=165.8
Q ss_pred CCCccEEEecCCC--CCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCC
Q 013423 64 KHNAEAIELRGEN--SVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIST 141 (443)
Q Consensus 64 ~~~L~~L~L~~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~ 141 (443)
|.+|+.+.+..+. .+..--..+|..|.+|+.+.+..+ ++.....++..+.+|+.+.+..+ +......+|..+..
T Consensus 86 C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~ 161 (394)
T 4gt6_A 86 CTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYS 161 (394)
T ss_dssp CTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTT
T ss_pred CccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccce--eeeecccceecccc
Confidence 5689999987641 122111245778888888887765 55555667788889999998753 34344556778888
Q ss_pred CcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCC-----------------------
Q 013423 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS----------------------- 198 (443)
Q Consensus 142 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~----------------------- 198 (443)
|+.+.+..+ +......+|.. ..|+.+.+.... ......++..+.+++.......
T Consensus 162 L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (394)
T 4gt6_A 162 LHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY 238 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC
T ss_pred cccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhccccceecccccccccccceeeccccccccccccc
Confidence 888888654 33333334433 457777665422 2222334444444444332211
Q ss_pred -------------CCCchhhHhhcCCCCCCEEEcCCCCCC----CCCCCCCCCEEecccccccCCchhhhhhHHHhccCC
Q 013423 199 -------------QVSNRGAAVLKMFPRLSFLNLAWTGVT----KLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLN 261 (443)
Q Consensus 199 -------------~l~~~~~~~l~~l~~L~~L~l~~~~l~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~ 261 (443)
.+......+|.++.+|+.+.+..+... .+.++++|+.+.+... +. .++. ..|.+|.
T Consensus 239 ~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~-i~-----~I~~-~aF~~c~ 311 (394)
T 4gt6_A 239 PSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR-IT-----ELPE-SVFAGCI 311 (394)
T ss_dssp CTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-----EECT-TTTTTCT
T ss_pred ccccccceEEcCCcceEcccceeeecccccEEecccccceecCcccccccccccccCCCc-cc-----ccCc-eeecCCC
Confidence 111223456778899999998765322 3778999999999753 21 1332 5788999
Q ss_pred CCCEEEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEecc
Q 013423 262 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 341 (443)
Q Consensus 262 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~ 341 (443)
+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+++.++... ...+..+.+|+.+.+.
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVA 386 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC------
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeC
Confidence 9999999764 55555667899999999999754 66566678999999999999987643 2456678899998887
Q ss_pred CCC
Q 013423 342 GGW 344 (443)
Q Consensus 342 ~n~ 344 (443)
.+.
T Consensus 387 ~~~ 389 (394)
T 4gt6_A 387 PGS 389 (394)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.62 E-value=3.1e-08 Score=92.82 Aligned_cols=89 Identities=24% Similarity=0.284 Sum_probs=46.5
Q ss_pred ccCCCCCcEEecCC-CCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCC
Q 013423 111 LTGMTCLKELDLSR-CVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTK 189 (443)
Q Consensus 111 l~~~~~L~~L~l~~-~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 189 (443)
+..+++|++|+|++ | .++......|..+++|++|++++|++....+..|..+++|+.|++++|.++...+..+..++
T Consensus 27 l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~- 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS- 104 (347)
T ss_dssp SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-
T ss_pred CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-
Confidence 55555566666654 4 44444334455555555555555555555444555555555555555555544333333333
Q ss_pred ccEEEecCCCCC
Q 013423 190 LEYLDLWGSQVS 201 (443)
Q Consensus 190 L~~L~l~~~~l~ 201 (443)
|+.|++.+|.+.
T Consensus 105 L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCC
T ss_pred ceEEEeeCCCcc
Confidence 555555555443
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.58 E-value=1e-07 Score=90.47 Aligned_cols=256 Identities=15% Similarity=0.108 Sum_probs=116.2
Q ss_pred CCccEEEecCCCCCCHHHHHHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcE
Q 013423 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (443)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 144 (443)
.+|+.+.+... ++.--..+|.+|.+|+.+.+..+ ++..+..+|.++ +|+.+.+..+ ++.....+|..+ +|+.
T Consensus 46 ~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~-~L~~ 117 (379)
T 4h09_A 46 DRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGT-DLDD 117 (379)
T ss_dssp GGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTC-CCSE
T ss_pred cCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce--eeEeccceeccC-Cccc
Confidence 45777777653 22111245677778888877654 555555666666 4666666542 333323344443 6777
Q ss_pred EEcccccCCHHHHHHhcCCCCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCC-----------------------
Q 013423 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS----------------------- 201 (443)
Q Consensus 145 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~----------------------- 201 (443)
+.+..+ +.......+..+ +++.+.+.. .++.....++..+.+++.+.+......
T Consensus 118 i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp EECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred ccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 776543 222222233332 344444432 222222233445555555544432211
Q ss_pred ------------chhhHhhcCCCCCCEEEcCCCC----CCCCCCCCCCCEEecccccccCCchhhhhhHHHhccCCCCCE
Q 013423 202 ------------NRGAAVLKMFPRLSFLNLAWTG----VTKLPNISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLER 265 (443)
Q Consensus 202 ------------~~~~~~l~~l~~L~~L~l~~~~----l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~ 265 (443)
......+..+.+++.+.+..+- -..+..+..|+.+.+..+ +. .+.. ..+..+.+|+.
T Consensus 195 ~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~-----~I~~-~aF~~~~~l~~ 267 (379)
T 4h09_A 195 TGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VT-----SIGS-FLLQNCTALKT 267 (379)
T ss_dssp CCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CC-----EECT-TTTTTCTTCCE
T ss_pred cccccccccceeEEeecccccccccceeeeccceeEEccccccCCccceEEEcCCC-cc-----EeCc-cccceeehhcc
Confidence 0111222233334444333221 001334444555544432 10 0111 23444555555
Q ss_pred EEcCCCCCCchhhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEec
Q 013423 266 LNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 340 (443)
Q Consensus 266 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l 340 (443)
+.+..+ +.......|..|++|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.++..+|..|.+|+.+.+
T Consensus 268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 555432 33323334455555555555555554444445555555555555432 44444445555555555554
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.38 E-value=9.6e-07 Score=83.66 Aligned_cols=241 Identities=13% Similarity=0.113 Sum_probs=154.2
Q ss_pred HHhcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCCCCCCCHHHHHHhhCCCCCcEEEcccccCCHHHHHHhcCC
Q 013423 84 AYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSL 163 (443)
Q Consensus 84 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 163 (443)
+++....+|+.+.+... ++.++..+|.+|.+|+.+.+..+ ++.....+|.++ +|+.+.+..+ +......+|..+
T Consensus 40 ~~~~~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~ 113 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT 113 (379)
T ss_dssp TTGGGGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC
T ss_pred cccccccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccceeccC
Confidence 44566788999999875 67777778999999999999764 565556677777 6777776543 444444455554
Q ss_pred CCCCEEEecCCCCChhhHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCCEEEcCCCCCCC-----------------
Q 013423 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK----------------- 226 (443)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~----------------- 226 (443)
+|+.+.+..+ +......++..+ +++.+.+..+ ++......+..+.+++.+.+.......
T Consensus 114 -~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (379)
T 4h09_A 114 -DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES 189 (379)
T ss_dssp -CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred -CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecc
Confidence 7999988754 333333445444 5666666543 333344556677777777665432110
Q ss_pred CC-----------------------CCCCCCEEecccccccCCchhhhhhHHHhccCCCCCEEEcCCCCCCchhhhcccC
Q 013423 227 LP-----------------------NISSLECLNLSFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST 283 (443)
Q Consensus 227 l~-----------------------~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 283 (443)
++ .+.+|+.+.+..+-. .+.. ..+..+..|+.+.+..+ ++.....++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~------~i~~-~~f~~~~~L~~i~lp~~-v~~I~~~aF~~ 261 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVT------TLGD-GAFYGMKALDEIAIPKN-VTSIGSFLLQN 261 (379)
T ss_dssp CCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCC------EECT-TTTTTCSSCCEEEECTT-CCEECTTTTTT
T ss_pred ccccccccccccccceeEEeecccccccccceeeecccee------EEcc-ccccCCccceEEEcCCC-ccEeCccccce
Confidence 22 233444444433210 0111 34566777888777654 44444556777
Q ss_pred CCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCC
Q 013423 284 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 343 (443)
Q Consensus 284 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n 343 (443)
+.+|+.+.+..+ ++......|..|++|+.+.+.++.++.++..+|..|.+|+.+.+..+
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 888888888653 44444456778888888888888888777778888888888888543
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.22 E-value=3.3e-06 Score=70.91 Aligned_cols=90 Identities=22% Similarity=0.169 Sum_probs=51.5
Q ss_pred HHhccCCCCCEEEcCCCCCCchhhhccc----CCCCCCEEEeeCCCCChHHHH----HhcCCCCCCEEEecCc---ccCc
Q 013423 255 TALQNLNHLERLNLEQTQVSDATLFPLS----TFKELIHLSLRNASLTDVSLH----QLSSLSKLTNLSIRDA---VLTN 323 (443)
Q Consensus 255 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~----~~~~L~~L~l~~n~i~~~~~~----~l~~l~~L~~L~l~~n---~i~~ 323 (443)
..+.....|+.|+|++|.+.+.....++ .-+.|++|+|++|.|++.+.. .+..-+.|++|++++| .+++
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence 4555666677777777766665544443 446677777777776655433 3334456777777643 3444
Q ss_pred hhhh----hcCCCCCCCEEeccCCC
Q 013423 324 SGLG----SFKPPRSLKLLDLHGGW 344 (443)
Q Consensus 324 ~~~~----~l~~~~~L~~L~l~~n~ 344 (443)
.+.. .+...+.|+.|+++.|.
T Consensus 144 ~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 144 QVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3322 23344667777766554
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.07 E-value=5.4e-05 Score=63.53 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=68.6
Q ss_pred HHHHHhcCCCCCcEEeecCCCCCChHHHHhc----cCCCCCcEEecCCCCCCCHHHHHHhh----CCCCCcEEEcccccC
Q 013423 81 EWMAYLGAFRYLRSLNVADCRRVTSSALWAL----TGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETGL 152 (443)
Q Consensus 81 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~l~~~~~~~~~----~l~~L~~L~l~~~~~ 152 (443)
.+...+.+-+.|++|+|+++..+++.+...+ ..-..|++|+|++| .+++.+..++. ..+.|++|+++.|.+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 3444455566777777776522666554433 34566777777777 66665544433 456777777777777
Q ss_pred CHHHHHHh----cCCCCCCEEEecCC---CCChh----hHHhccCCCCccEEEecCCC
Q 013423 153 TADGIALL----SSLQNLSVLDLGGL---PVTDL----VLRSLQVLTKLEYLDLWGSQ 199 (443)
Q Consensus 153 ~~~~~~~l----~~l~~L~~L~l~~~---~~~~~----~~~~l~~l~~L~~L~l~~~~ 199 (443)
.+.+...+ ..-+.|++|+++++ .+.+. ....+..-+.|+.|++..+.
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 76654433 34456777777643 33432 22344455667777766554
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.99 E-value=5.6e-06 Score=73.51 Aligned_cols=80 Identities=23% Similarity=0.230 Sum_probs=48.8
Q ss_pred CCCCCCEEEeeCCCCCh--HHHHHhcCCCCCCEEEecCcccCchh-hhhcCCCCCCCEEeccCCCCCCH------HHHHH
Q 013423 283 TFKELIHLSLRNASLTD--VSLHQLSSLSKLTNLSIRDAVLTNSG-LGSFKPPRSLKLLDLHGGWLLTE------DAILQ 353 (443)
Q Consensus 283 ~~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~l~~n~i~~~~-~~~l~~~~~L~~L~l~~n~~l~~------~~~~~ 353 (443)
.+++|+.|+|++|++++ .++..+..+++|+.|+|++|++++.. ...+..+ +|++|++++|+ ++. .....
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Np-l~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNS-LCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTST-TGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCc-CccccCcchhHHHH
Confidence 45666666666666654 23344556677777777777776651 2233333 78888888887 432 34455
Q ss_pred HHHhCCCceee
Q 013423 354 FCKMHPRIEVW 364 (443)
Q Consensus 354 ~~~~~~~l~~~ 364 (443)
+...+|.++.+
T Consensus 246 il~~~P~L~~L 256 (267)
T 3rw6_A 246 IRERFPKLLRL 256 (267)
T ss_dssp HHHHCTTCCEE
T ss_pred HHHHCcccCeE
Confidence 66777877765
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=1.2e-05 Score=71.27 Aligned_cols=81 Identities=22% Similarity=0.203 Sum_probs=58.8
Q ss_pred ccCCCCCEEEcCCCCCCc--hhhhcccCCCCCCEEEeeCCCCChH-HHHHhcCCCCCCEEEecCcccCchhh-------h
Q 013423 258 QNLNHLERLNLEQTQVSD--ATLFPLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTNSGL-------G 327 (443)
Q Consensus 258 ~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~-------~ 327 (443)
..+++|+.|+|++|.+++ ..+..+..+++|+.|+|++|.+++. ....+..+ +|++|++++|.+++..+ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 567889999999998887 3345566889999999999998865 12233333 89999999999875321 2
Q ss_pred hcCCCCCCCEEe
Q 013423 328 SFKPPRSLKLLD 339 (443)
Q Consensus 328 ~l~~~~~L~~L~ 339 (443)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 344578888886
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.35 E-value=0.0082 Score=46.75 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=42.7
Q ss_pred CEEEeeCCCCC-hHHHHHhcCCCCCCEEEecCcccCchhhhhcCCCCCCCEEeccCCCCCCH
Q 013423 288 IHLSLRNASLT-DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE 348 (443)
Q Consensus 288 ~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~~l~~ 348 (443)
..++.++++++ ..+|..+ .++|++|+|++|+|+.+....|..+++|+.|+|++|+..-+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 36677777765 1233221 24789999999999888777788888999999999986543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.99 E-value=0.04 Score=42.80 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=19.6
Q ss_pred CCCEEEeeCCCCChHHHHHhcCCCCCCEEEecCccc
Q 013423 286 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 321 (443)
Q Consensus 286 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i 321 (443)
+|+.|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455555555555544444455555555555555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.06 E-value=4.2 Score=29.44 Aligned_cols=41 Identities=7% Similarity=0.019 Sum_probs=22.4
Q ss_pred hhhcccCCCCCCEEEeeCCCCChHHHHHhcCCCCCCEEEecC
Q 013423 277 TLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 318 (443)
Q Consensus 277 ~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 318 (443)
.-.+|.+|.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+..
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3344556666666666553 3333334556666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.64 E-value=5 Score=29.03 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=15.9
Q ss_pred hcCCCCCcEEeecCCCCCChHHHHhccCCCCCcEEecCC
Q 013423 86 LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSR 124 (443)
Q Consensus 86 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~ 124 (443)
|.+|.+|+.+.+..+ ++.++..+|.+|.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 344444444444443 3333333444444444444443
No 167
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=27.02 E-value=36 Score=17.43 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=11.8
Q ss_pred ccchHHHHHHHHHHH
Q 013423 3 RERESELVRLCIEAA 17 (443)
Q Consensus 3 ~~~~~~l~~~~~~~~ 17 (443)
+.+++.|++.|++..
T Consensus 11 ekqieelldncietf 25 (31)
T 4h62_V 11 EKQIEELLDNCIETF 25 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456788999999865
Done!