BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013424
(443 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AL19|FTHS_DESPS Formate--tetrahydrofolate ligase OS=Desulfotalea psychrophila
(strain LSv54 / DSM 12343) GN=fhs PE=3 SV=1
Length = 557
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 38/165 (23%)
Query: 191 KNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHTLEKFSFVPSG 250
KN LH+ N + + VV Y +P+ ++A KR+ C+ A + V
Sbjct: 358 KNLLHH-INTVKKAGINPVVCINAFYTDRPNEIKA--VKRI--CEHAG------ARVAVS 406
Query: 251 THQAHGGN-------AMIDSCTQSKDLEEVIQTDVPCTK---------SSSENESVVPAI 294
TH HGG+ A+ID+C + D + + + D P K ++ S P
Sbjct: 407 THWEHGGDGALEFADAVIDACEEKNDFKFLYELDTPLEKRIELIAKEVYGADGVSYTPEA 466
Query: 295 RSVC--------MRDMGTEMTPV---ASQEPSRTATPVGATTPLR 328
R+ M ++GT M S +P P G T P+R
Sbjct: 467 RTKLTQLAKDPEMAELGTCMVKTHLSLSHDPKLKGVPKGWTLPIR 511
>sp|Q93Q17|AEXT_AERSA ADP-ribosyltransferase toxin AexT OS=Aeromonas salmonicida GN=aexT
PE=3 SV=1
Length = 475
Score = 35.8 bits (81), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 313 EPSRTATPVGATTPLRSPTSSIPSTPRGRAPASTPMEQTGIDESQHPVENSKRDLSEQEI 372
EP+R+AT A PL+S S + P +A A EQ G++ Q+ L EQ
Sbjct: 228 EPARSATTAAAVAPLQSGESEVNVEPADKALAEGLQEQFGLEAEQY--------LGEQPH 279
Query: 373 KEKTRREIVALGV 385
+ E++ALG+
Sbjct: 280 GTYSDAEVMALGL 292
>sp|Q58734|HMDY_METJA H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related
protein MJ1338 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ1338 PE=3 SV=1
Length = 353
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 228 TKRVDFCQTASHTLEKFSFVPSGTHQAHGGNAMIDSCTQSKDL--EEVIQTDVPCTKSSS 285
TKR D ++ H + VP GT Q HG + T K+L EE I+ V KS+
Sbjct: 144 TKRKDVGISSMHP----AAVP-GTPQ-HGHYVIGGKTTDGKELATEEQIKKAVELAKSAG 197
Query: 286 ENESVVPAIRSVCMRDMGTEMTPVA 310
+ VVPA S + DMG+ +T VA
Sbjct: 198 KEAYVVPADVSSVVADMGSLVTAVA 222
>sp|Q15569|TESK1_HUMAN Dual specificity testis-specific protein kinase 1 OS=Homo sapiens
GN=TESK1 PE=1 SV=2
Length = 626
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 82 LGHNQGEQASFQPNETLPRENTEVSRVKMQQF---------SKGDSVNLSAIHPMRMHED 132
L HNQG A P+ TLPR + +SR + F + GD NL+ ++P + ED
Sbjct: 329 LTHNQGSVARGGPSATLPRPDPRLSRSRSDLFLPPSPESPPNWGD--NLTRVNPFSLRED 386
>sp|B9DPG6|HSLU_STACT ATP-dependent protease ATPase subunit HslU OS=Staphylococcus
carnosus (strain TM300) GN=hslU PE=3 SV=1
Length = 468
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 53 VRNSLLNGGFDDEAPSLEVASEKGAGEVVLGHNQGEQASFQPNETLPRENTE 104
+R+ LLNG ++E ++V + GA + LG NQ +Q N+ +P++ E
Sbjct: 188 IRSQLLNGQLEEEKVRIKVEQDPGALGM-LGTNQNQQVQDMMNQLMPKKKVE 238
>sp|Q8Z5H2|GMM_SALTI GDP-mannose mannosyl hydrolase OS=Salmonella typhi GN=gmm PE=3 SV=1
Length = 157
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 68 SLEVASEKGAGEVVLGHNQGEQAS---FQPNETLPRENT-EVSRVKMQQFSKGDSVNLSA 123
SL+ E G GE++LG A F P + ++ T E + ++ Q G + L+A
Sbjct: 19 SLDFIVENGQGEILLGQRLNRPAQGYWFVPGGRVCKDETLEAAFARLTQAELGVRLPLAA 78
Query: 124 --IHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNR 181
+ + H YD N SS F H + +A S R +P + + +W+
Sbjct: 79 GTFYGVWQHF-----YDDNFSSEDFSTHYIVLGFRLRVAESDLR-LPDAQHGSYRWLTPE 132
Query: 182 QIIQANYAKKNA 193
Q++ + +N+
Sbjct: 133 QLLAGDNVHENS 144
>sp|B7GSF9|DNAA_BIFLS Chromosomal replication initiator protein DnaA OS=Bifidobacterium
longum subsp. infantis (strain ATCC 15697 / DSM 20088 /
JCM 1222 / NCTC 11817 / S12) GN=dnaA PE=3 SV=1
Length = 500
Score = 32.7 bits (73), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 46/125 (36%), Gaps = 24/125 (19%)
Query: 247 VPSGTHQAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEM 306
VP G + I C + D + IQ D+ N+S++ A+R+V G M
Sbjct: 41 VPEGVF-----GSTIVLCVDNNDTLQAIQGDL--------NDSLLQALRTVT----GENM 83
Query: 307 TPVASQEPSRTATPVGATTPLRSPTSSIPST-------PRGRAPASTPMEQTGIDESQHP 359
P P P+ A P + S I T G P + P E ESQ P
Sbjct: 84 FPAFKVVPKTEPEPLSAAKPAQPYPSEISPTVAEFGKESYGAKPVAAPREPMPATESQFP 143
Query: 360 VENSK 364
V K
Sbjct: 144 VGQQK 148
>sp|P19992|HSD_STREX 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Streptomyces
exfoliatus PE=1 SV=1
Length = 255
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 278 VPCTKSSSENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGATTPLRSPTSSIPST 337
+ T S ++ V + + ++GT+ V S P T TP+ A T +R + P+T
Sbjct: 146 LALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNT 205
Query: 338 PRGRA 342
P GR
Sbjct: 206 PMGRV 210
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.123 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,903,913
Number of Sequences: 539616
Number of extensions: 6887875
Number of successful extensions: 22947
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 196
Number of HSP's that attempted gapping in prelim test: 21552
Number of HSP's gapped (non-prelim): 1047
length of query: 443
length of database: 191,569,459
effective HSP length: 121
effective length of query: 322
effective length of database: 126,275,923
effective search space: 40660847206
effective search space used: 40660847206
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)