Query 013424
Match_columns 443
No_of_seqs 74 out of 76
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 03:42:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13124 DUF3963: Protein of u 42.2 12 0.00027 28.0 0.9 10 171-180 13-22 (40)
2 PRK06369 nac nascent polypepti 17.8 72 0.0016 28.9 1.4 17 11-27 2-20 (115)
3 PF14000 Packaging_FI: DNA pac 16.6 1.4E+02 0.003 27.5 3.0 14 419-432 26-39 (125)
4 PF14813 NADH_B2: NADH dehydro 14.0 79 0.0017 26.5 0.7 18 158-175 45-62 (71)
5 PF06131 DUF963: Schizosacchar 12.3 1.3E+02 0.0029 22.5 1.4 15 312-326 4-18 (36)
6 PF06131 DUF963: Schizosacchar 12.0 1.5E+02 0.0033 22.2 1.6 19 307-325 11-29 (36)
7 PF11831 Myb_Cef: pre-mRNA spl 10.5 1.5E+03 0.033 22.2 8.9 20 420-439 105-124 (231)
8 PF05300 DUF737: Protein of un 6.9 8.7E+02 0.019 23.7 5.0 57 369-440 81-137 (187)
9 KOG0742 AAA+-type ATPase [Post 6.7 7.6E+02 0.016 27.8 4.9 28 415-442 129-156 (630)
10 TIGR00264 alpha-NAC-related pr 5.0 3.6E+02 0.0077 24.7 1.1 16 12-27 4-24 (116)
No 1
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=42.25 E-value=12 Score=27.98 Aligned_cols=10 Identities=50% Similarity=1.162 Sum_probs=9.0
Q ss_pred chhHHHHHhh
Q 013424 171 WNDAEKWIMN 180 (443)
Q Consensus 171 WdDAEKWI~s 180 (443)
.||-||||-|
T Consensus 13 fddiqkwirn 22 (40)
T PF13124_consen 13 FDDIQKWIRN 22 (40)
T ss_pred HHHHHHHHHH
Confidence 5899999988
No 2
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=17.75 E-value=72 Score=28.90 Aligned_cols=17 Identities=24% Similarity=0.555 Sum_probs=14.1
Q ss_pred cCCCChhhhhhhh--cCCC
Q 013424 11 TGIISPSKLRMKL--IGPH 27 (443)
Q Consensus 11 ~G~~SP~KLRmkL--lG~~ 27 (443)
+|+++|.|+|.|+ ||..
T Consensus 2 ~~~~nprk~rkmmkkmGik 20 (115)
T PRK06369 2 MGGMNPRKMKQMMKQMGID 20 (115)
T ss_pred CCCCCHHHHHHHHHHcCCc
Confidence 6899999999887 6654
No 3
>PF14000 Packaging_FI: DNA packaging protein FI
Probab=16.59 E-value=1.4e+02 Score=27.46 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=11.4
Q ss_pred HHHHHHhhhhhhhh
Q 013424 419 RIEYEKRASAWAEA 432 (443)
Q Consensus 419 k~~~e~RAAAWEEA 432 (443)
..+++.|.|-|||.
T Consensus 26 aAeiaqRVAEwEEE 39 (125)
T PF14000_consen 26 AAEIAQRVAEWEEE 39 (125)
T ss_pred HHHHHHHHHHHHHH
Confidence 46789999999874
No 4
>PF14813 NADH_B2: NADH dehydrogenase 1 beta subcomplex subunit 2
Probab=13.99 E-value=79 Score=26.51 Aligned_cols=18 Identities=44% Similarity=0.914 Sum_probs=16.2
Q ss_pred ccCCCCCCCCCCCchhHH
Q 013424 158 HMARSFSRPMPSKWNDAE 175 (443)
Q Consensus 158 ~~~~~fSrP~PSKWdDAE 175 (443)
++++=|--|-||||-|+|
T Consensus 45 hvlGhfpyPdps~wTDeE 62 (71)
T PF14813_consen 45 HVLGHFPYPDPSEWTDEE 62 (71)
T ss_pred hhcCCCCCCChhhcchhh
Confidence 567889999999999998
No 5
>PF06131 DUF963: Schizosaccharomyces pombe repeat of unknown function (DUF963); InterPro: IPR009306 This family consists of a series of repeated sequences from one hypothetical protein (Q96WV6 from SWISSPROT) found in Schizosaccharomyces pombe. The function of this family is unknown.
Probab=12.26 E-value=1.3e+02 Score=22.45 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=5.9
Q ss_pred CCCCCcCCCCccCCC
Q 013424 312 QEPSRTATPVGATTP 326 (443)
Q Consensus 312 qEpSRt~TPi~atTP 326 (443)
+.|=.+-|||-..||
T Consensus 4 st~~ntSTPi~sSt~ 18 (36)
T PF06131_consen 4 STPVNTSTPITSSTV 18 (36)
T ss_pred cccccccCcccccce
Confidence 333333444444433
No 6
>PF06131 DUF963: Schizosaccharomyces pombe repeat of unknown function (DUF963); InterPro: IPR009306 This family consists of a series of repeated sequences from one hypothetical protein (Q96WV6 from SWISSPROT) found in Schizosaccharomyces pombe. The function of this family is unknown.
Probab=12.00 E-value=1.5e+02 Score=22.17 Aligned_cols=19 Identities=32% Similarity=0.587 Sum_probs=8.4
Q ss_pred ccCCcCCCCCcCCCCccCC
Q 013424 307 TPVASQEPSRTATPVGATT 325 (443)
Q Consensus 307 TPIaSqEpSRt~TPi~atT 325 (443)
|||.+..+=-+-|||..++
T Consensus 11 TPi~sSt~vnsStpI~sSt 29 (36)
T PF06131_consen 11 TPITSSTVVNSSTPITSST 29 (36)
T ss_pred Ccccccceeccccceeecc
Confidence 4444444444444444443
No 7
>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.
Probab=10.50 E-value=1.5e+03 Score=22.24 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=9.7
Q ss_pred HHHHHhhhhhhhhhhhhchh
Q 013424 420 IEYEKRASAWAEAEKSKHIA 439 (443)
Q Consensus 420 ~~~e~RAAAWEEAEkaK~~A 439 (443)
.+++.|-.+=+++++.+-+.
T Consensus 105 ad~d~r~~~~~~~~e~~e~~ 124 (231)
T PF11831_consen 105 ADRDARERAEREEEEEKELK 124 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444333
No 8
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=6.90 E-value=8.7e+02 Score=23.66 Aligned_cols=57 Identities=26% Similarity=0.426 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhhhccCcccccccccccccccCCccccccchhhHHHHHHHHHhhhhhhhhhhhhchhc
Q 013424 369 EQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIAR 440 (443)
Q Consensus 369 E~el~~ktR~ei~~LG~Qlgk~nIaaWASkEEee~~~s~sl~~~d~~~~~k~~~e~RAAAWEEAEkaK~~AR 440 (443)
.++|..+..++.+.+=.+|.+. +.+|-+ ...+++...++--|+.+=+|-.|+|++||
T Consensus 81 ~e~~~kr~e~eQa~VQeEL~r~-----a~rERe----------Aa~e~l~~ai~rer~~~~~E~~ka~~la~ 137 (187)
T PF05300_consen 81 KEELLKRFEQEQAQVQEELARL-----AQRERE----------AAAEHLTRAILRERASTEQERQKAKQLAR 137 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHH----------HHHhhhHHHHHHhhhcchhHHHHHHHHHH
Confidence 4566777778877777778763 222221 12245667888889999999999999987
No 9
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=6.67 E-value=7.6e+02 Score=27.84 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhchhccC
Q 013424 415 EELERIEYEKRASAWAEAEKSKHIARFH 442 (443)
Q Consensus 415 ~~~~k~~~e~RAAAWEEAEkaK~~ARyk 442 (443)
+..+...-|.|-.+=+|+...--+||||
T Consensus 129 er~r~~~Ee~rk~lq~qaq~k~q~arYq 156 (630)
T KOG0742|consen 129 ERIRVQAEERRKTLQEETQQKQQRARYQ 156 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566677778887777888886
No 10
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=5.04 E-value=3.6e+02 Score=24.68 Aligned_cols=16 Identities=19% Similarity=0.594 Sum_probs=12.3
Q ss_pred CCCChh---hhhhhh--cCCC
Q 013424 12 GIISPS---KLRMKL--IGPH 27 (443)
Q Consensus 12 G~~SP~---KLRmkL--lG~~ 27 (443)
||++|. |||.|+ ||..
T Consensus 4 g~~nPr~~~~mkkmMk~MGi~ 24 (116)
T TIGR00264 4 GKMNPKMLKQMQKMMKQMGME 24 (116)
T ss_pred CCCCcccHHHHHHHHHHcCCC
Confidence 469999 898777 7754
Done!