Query 013424
Match_columns 443
No_of_seqs 74 out of 76
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 10:19:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kfd_A PRE-mRNA-processing pro 14.1 88 0.003 25.2 2.1 23 161-183 23-48 (69)
2 1fgl_B HIV-1 GAG protein; cycl 11.1 68 0.0023 21.4 0.5 17 5-21 2-18 (26)
3 1q8d_A GDNF family receptor al 6.1 1.5E+02 0.005 25.6 0.6 10 302-311 55-64 (108)
4 3gzs_A Uncharacterized SUSD su 5.8 1.6E+02 0.0053 30.6 0.8 16 167-182 406-433 (515)
5 3sgh_A SUSD homolog; alpha-alp 5.5 1.7E+02 0.0058 30.1 0.8 15 168-182 394-420 (499)
6 3ehm_A SUSD homolog; glycan bi 5.2 1.7E+02 0.0058 30.4 0.6 8 175-182 440-447 (532)
7 4f53_A SUSD homolog; TPR-like 5.0 1.8E+02 0.006 30.2 0.5 15 168-182 415-440 (520)
8 4f7a_A Putative uncharacterize 4.9 1.8E+02 0.0061 30.0 0.5 15 168-182 407-433 (511)
9 1jei_A Emerin; membrane protei 4.5 2.3E+02 0.0079 21.5 0.7 21 365-389 4-24 (53)
10 2c9l_Y EB1, zebra, BZLF1 trans 4.3 2.2E+02 0.0077 22.1 0.5 13 66-78 49-61 (63)
No 1
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=14.14 E-value=88 Score=25.16 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=18.3
Q ss_pred CCCC---CCCCCCchhHHHHHhhhhh
Q 013424 161 RSFS---RPMPSKWNDAEKWIMNRQI 183 (443)
Q Consensus 161 ~~fS---rP~PSKWdDAEKWI~sr~~ 183 (443)
+-|+ +|+|+-|+||-+=|-+-+.
T Consensus 23 Rvy~~~~k~kPe~WE~A~~~I~~~~E 48 (69)
T 2kfd_A 23 RTYTKTGKPKPSTWDLASKELGESLE 48 (69)
T ss_dssp HHSCSSSSCCCSSHHHHHHHHTTSTT
T ss_pred HHHcccCCCCCccHHHHHHHHccCHH
Confidence 3455 8899999999999987444
No 2
>1fgl_B HIV-1 GAG protein; cyclophilin, binding protein for cyclosporin A, AIDS, isomer peptide complex; 1.80A {Human immunodeficiency virus type 1}
Probab=11.10 E-value=68 Score=21.37 Aligned_cols=17 Identities=41% Similarity=0.708 Sum_probs=14.6
Q ss_pred cccccccCCCChhhhhh
Q 013424 5 RIHKAQTGIISPSKLRM 21 (443)
Q Consensus 5 RI~k~q~G~~SP~KLRm 21 (443)
|.|-+|.|-|.|+-||-
T Consensus 2 r~Hp~~agp~p~gq~R~ 18 (26)
T 1fgl_B 2 RXHPVHAGPIAPGQLRE 18 (26)
T ss_pred CcCcccCCCCCCCCccC
Confidence 78999999999988873
No 3
>1q8d_A GDNF family receptor alpha 1; all-alpha, Cys-rich, hormone/growth factor receptor complex; 1.80A {Rattus norvegicus} SCOP: a.228.1.1
Probab=6.07 E-value=1.5e+02 Score=25.64 Aligned_cols=10 Identities=50% Similarity=0.624 Sum_probs=7.4
Q ss_pred CccccccCCc
Q 013424 302 MGTEMTPVAS 311 (443)
Q Consensus 302 mGTEMTPIaS 311 (443)
+||-|||-=-
T Consensus 55 iGt~mTPNYv 64 (108)
T 1q8d_A 55 IGTVMTPNYV 64 (108)
T ss_dssp TTSTTCCC--
T ss_pred cccccCcccc
Confidence 8999999643
No 4
>3gzs_A Uncharacterized SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Bacteroides fragilis} SCOP: a.118.8.0
Probab=5.84 E-value=1.6e+02 Score=30.58 Aligned_cols=16 Identities=13% Similarity=0.547 Sum_probs=12.4
Q ss_pred CCCCchhH------------HHHHhhhh
Q 013424 167 MPSKWNDA------------EKWIMNRQ 182 (443)
Q Consensus 167 ~PSKWdDA------------EKWI~sr~ 182 (443)
..-|||++ ||||+.-+
T Consensus 406 ~~v~w~~~~~~e~~Le~I~tQKwiA~f~ 433 (515)
T 3gzs_A 406 ITIRWENGATEEEKLERIITQKYLAIFP 433 (515)
T ss_dssp CCSSCCTTSCHHHHHHHHHHHHHHHSTT
T ss_pred cccccccccchhHHHHHHHHHHHHHhCC
Confidence 45699975 99999844
No 5
>3sgh_A SUSD homolog; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron} SCOP: a.118.8.0
Probab=5.50 E-value=1.7e+02 Score=30.12 Aligned_cols=15 Identities=40% Similarity=0.897 Sum_probs=11.4
Q ss_pred CCCchhH------------HHHHhhhh
Q 013424 168 PSKWNDA------------EKWIMNRQ 182 (443)
Q Consensus 168 PSKWdDA------------EKWI~sr~ 182 (443)
.=|||++ ||||+.-+
T Consensus 394 ~v~w~~~~~~e~~Le~I~tQKwiA~f~ 420 (499)
T 3sgh_A 394 TIKWEDGADDAKKLERVLTQKWIACYP 420 (499)
T ss_dssp CSSCCTTSCHHHHHHHHHHHHHHHSCS
T ss_pred cccccccccchHHHHHHHHHHHHHhCC
Confidence 4599875 99999843
No 6
>3ehm_A SUSD homolog; glycan binding, mucin O-glycan binding, tetratrico-peptide repeat, sugar binding protein; 2.00A {Bacteroides thetaiotaomicron} PDB: 3ehn_A*
Probab=5.20 E-value=1.7e+02 Score=30.43 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=6.6
Q ss_pred HHHHhhhh
Q 013424 175 EKWIMNRQ 182 (443)
Q Consensus 175 EKWI~sr~ 182 (443)
||||+.-+
T Consensus 440 QKwIA~f~ 447 (532)
T 3ehm_A 440 QKYLALYP 447 (532)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 99999844
No 7
>4f53_A SUSD homolog; TPR-like protein, mucin O-glycan binding, structural genomic center for structural genomics, JCSG; 2.25A {Bacteroides ovatus}
Probab=4.99 E-value=1.8e+02 Score=30.19 Aligned_cols=15 Identities=33% Similarity=0.827 Sum_probs=11.6
Q ss_pred CCCchhH-----------HHHHhhhh
Q 013424 168 PSKWNDA-----------EKWIMNRQ 182 (443)
Q Consensus 168 PSKWdDA-----------EKWI~sr~ 182 (443)
.-|||++ ||||+.-+
T Consensus 415 ~v~w~~~~~e~~Le~IitQKwIA~f~ 440 (520)
T 4f53_A 415 TVAWSGGDFEKSLEQIITQKWIANFP 440 (520)
T ss_dssp CSSCCCSSHHHHHHHHHHHHHHHHTT
T ss_pred EEEecCCcHHHHHHHHHHHHHHhhCC
Confidence 3489975 99999844
No 8
>4f7a_A Putative uncharacterized protein; TPR-like protein, mucin O-glycan binding, structural genomic center for structural genomics, JCSG; HET: PGE; 1.85A {Bacteroides vulgatus}
Probab=4.91 E-value=1.8e+02 Score=30.04 Aligned_cols=15 Identities=33% Similarity=0.734 Sum_probs=11.5
Q ss_pred CCCchhH------------HHHHhhhh
Q 013424 168 PSKWNDA------------EKWIMNRQ 182 (443)
Q Consensus 168 PSKWdDA------------EKWI~sr~ 182 (443)
.-|||++ ||||+.-+
T Consensus 407 ~v~w~~~~~~e~~Le~I~tQKwiA~f~ 433 (511)
T 4f7a_A 407 TPNFDDAVNQEEQLEKIITQKWIACWP 433 (511)
T ss_dssp CSCTTCCSSHHHHHHHHHHHHHHHHTT
T ss_pred eeecccCCCchHHHHHHHHHHHHHhCC
Confidence 4589964 99999844
No 9
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=4.51 E-value=2.3e+02 Score=21.53 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=17.0
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCc
Q 013424 365 RDLSEQEIKEKTRREIVALGVQLGK 389 (443)
Q Consensus 365 ~elsE~el~~ktR~ei~~LG~Qlgk 389 (443)
.+|++.|| |.++..+|.+-|-
T Consensus 4 ~~Lsd~eL----r~~L~~~G~~~GP 24 (53)
T 1jei_A 4 ADLSDTEL----TTLLRRYNIPHGP 24 (53)
T ss_dssp TTCCHHHH----HHHHSSSCCSCCC
T ss_pred HHcCHHHH----HHHHHHhCCCCCC
Confidence 46999998 5588889999884
No 10
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=4.26 E-value=2.2e+02 Score=22.12 Aligned_cols=13 Identities=38% Similarity=0.365 Sum_probs=11.2
Q ss_pred CCCcccccccCCC
Q 013424 66 APSLEVASEKGAG 78 (443)
Q Consensus 66 ~~~~dv~s~~~~~ 78 (443)
||+|||-|..|.+
T Consensus 49 cpsldvdsiip~t 61 (63)
T 2c9l_Y 49 CPSLDVDSIIPRT 61 (63)
T ss_dssp CTTCCHHHHSCCC
T ss_pred CCcccccccCCCC
Confidence 9999999988764
Done!