Query 013424
Match_columns 443
No_of_seqs 74 out of 76
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 10:19:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013424.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013424hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x58a1 a.4.1.1 (A:8-56) Hypot 4.3 86 0.0063 21.8 0.0 10 145-154 29-38 (49)
2 d1jiha1 d.240.1.1 (A:390-509) 3.4 2.1E+02 0.015 21.8 1.7 19 162-180 11-29 (120)
3 d1h67a_ a.40.1.1 (A:) Calponin 3.4 2.1E+02 0.015 21.7 1.7 17 167-183 1-17 (108)
4 d3bi1a1 a.48.2.1 (A:594-750) G 2.7 2E+02 0.015 22.5 0.8 14 170-183 131-144 (157)
5 d1ghha_ d.57.1.1 (A:) DNA dama 2.5 1.6E+02 0.011 22.2 -0.1 9 171-179 71-79 (81)
6 d1g7da_ a.71.1.1 (A:) Endoplas 2.4 94 0.0068 24.0 -1.6 21 2-22 66-86 (106)
7 d2pxrc1 a.73.1.1 (C:1-145) HIV 2.4 1.7E+02 0.012 24.3 -0.1 19 2-20 79-97 (145)
8 d1zrua3 b.163.1.2 (A:2-140) Re 2.2 2.5E+02 0.018 22.7 0.8 14 15-28 21-34 (139)
9 d1q8da_ a.228.1.1 (A:) GDNF re 2.2 2.3E+02 0.017 22.1 0.5 11 299-309 52-62 (108)
10 d1t3ta3 d.284.1.2 (A:1-152) FG 2.2 1.3E+02 0.0098 24.1 -1.1 16 383-400 77-92 (152)
No 1
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.27 E-value=86 Score=21.81 Aligned_cols=10 Identities=60% Similarity=1.095 Sum_probs=8.2
Q ss_pred cccccccccc
Q 013424 145 SFEFHKGERS 154 (443)
Q Consensus 145 sFEFhKgEra 154 (443)
+|.||+|.++
T Consensus 29 s~PF~~GR~~ 38 (49)
T d1x58a1 29 SFPFQKGRRA 38 (49)
T ss_dssp HSCCCTTCCH
T ss_pred ccCCCCCchh
Confidence 6899998776
No 2
>d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.42 E-value=2.1e+02 Score=21.84 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=14.9
Q ss_pred CCCCCCCCCchhHHHHHhh
Q 013424 162 SFSRPMPSKWNDAEKWIMN 180 (443)
Q Consensus 162 ~fSrP~PSKWdDAEKWI~s 180 (443)
.|.-++-+-++||++||.-
T Consensus 11 ~F~~~~~~s~~~~~~WL~~ 29 (120)
T d1jiha1 11 NLRGKSCNSIVDCISWLEV 29 (120)
T ss_dssp ECCTTTTCSHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHH
Confidence 4633467899999999987
No 3
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=3.41 E-value=2.1e+02 Score=21.69 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.2
Q ss_pred CCCCchhHHHHHhhhhh
Q 013424 167 MPSKWNDAEKWIMNRQI 183 (443)
Q Consensus 167 ~PSKWdDAEKWI~sr~~ 183 (443)
||-++.++.+||...-+
T Consensus 1 mp~~e~e~~~Wie~~~~ 17 (108)
T d1h67a_ 1 MPQTERQLRVWIEGATG 17 (108)
T ss_dssp CCCSSHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHhC
Confidence 78899999999998433
No 4
>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.69 E-value=2e+02 Score=22.47 Aligned_cols=14 Identities=14% Similarity=0.477 Sum_probs=11.4
Q ss_pred CchhHHHHHhhhhh
Q 013424 170 KWNDAEKWIMNRQI 183 (443)
Q Consensus 170 KWdDAEKWI~sr~~ 183 (443)
.|++++|||.--..
T Consensus 131 ~w~~~~~qi~~~~~ 144 (157)
T d3bi1a1 131 AWGEVKRQIYVAAF 144 (157)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 69999999987443
No 5
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=2.53 E-value=1.6e+02 Score=22.17 Aligned_cols=9 Identities=33% Similarity=1.405 Sum_probs=4.9
Q ss_pred chhHHHHHh
Q 013424 171 WNDAEKWIM 179 (443)
Q Consensus 171 WdDAEKWI~ 179 (443)
|.||.-|++
T Consensus 71 wE~AD~W~~ 79 (81)
T d1ghha_ 71 WESADDWFV 79 (81)
T ss_dssp HHTHHHHCC
T ss_pred HhChHhhhc
Confidence 555555554
No 6
>d1g7da_ a.71.1.1 (A:) Endoplasmic reticulum protein ERP29, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.44 E-value=94 Score=24.03 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=14.7
Q ss_pred ccccccccccCCCChhhhhhh
Q 013424 2 EYERIHKAQTGIISPSKLRMK 22 (443)
Q Consensus 2 eYERI~k~q~G~~SP~KLRmk 22 (443)
|.+||++.-.|.+||.|+--+
T Consensus 66 E~~RL~~il~g~vs~~K~del 86 (106)
T d1g7da_ 66 ELARISKLIENKMSEGKKEEL 86 (106)
T ss_dssp HHHHHHHHHHSCCCTTTHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHH
Confidence 456777765688999886543
No 7
>d2pxrc1 a.73.1.1 (C:1-145) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=2.36 E-value=1.7e+02 Score=24.27 Aligned_cols=19 Identities=37% Similarity=0.899 Sum_probs=14.6
Q ss_pred ccccccccccCCCChhhhh
Q 013424 2 EYERIHKAQTGIISPSKLR 20 (443)
Q Consensus 2 eYERI~k~q~G~~SP~KLR 20 (443)
||.|.|-++.|-+-|+.||
T Consensus 79 ewDr~HP~~~gp~ppgq~r 97 (145)
T d2pxrc1 79 EWDRLHPVHAGPIAPGQMR 97 (145)
T ss_dssp HHHHHSCCCSSCSSTTCCC
T ss_pred HHhccCCCCCCCCCCCCcC
Confidence 5778888877777777776
No 8
>d1zrua3 b.163.1.2 (A:2-140) Receptor binding protein, rbp, N-terminal domain {Lactococcus lactis phage p2 [TaxId: 100641]}
Probab=2.25 E-value=2.5e+02 Score=22.70 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=10.7
Q ss_pred ChhhhhhhhcCCCC
Q 013424 15 SPSKLRMKLIGPHH 28 (443)
Q Consensus 15 SP~KLRmkLlG~~~ 28 (443)
.-+||-|||-|-.-
T Consensus 21 NDaKLYMmLtgmdY 34 (139)
T d1zrua3 21 NDGKLYMMLTGMDY 34 (139)
T ss_dssp HHHHHHHHHHTCCT
T ss_pred CCceEEEEEecCcc
Confidence 34799999988653
No 9
>d1q8da_ a.228.1.1 (A:) GDNF receptor alpha {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.21 E-value=2.3e+02 Score=22.14 Aligned_cols=11 Identities=45% Similarity=0.471 Sum_probs=9.0
Q ss_pred eccCccccccC
Q 013424 299 MRDMGTEMTPV 309 (443)
Q Consensus 299 mRDmGTEMTPI 309 (443)
+...||.|||-
T Consensus 52 ~gligT~~tpn 62 (108)
T d1q8da_ 52 SGLIGTVMTPN 62 (108)
T ss_dssp HTTTTSTTCCC
T ss_pred hccCCcccchh
Confidence 56789999985
No 10
>d1t3ta3 d.284.1.2 (A:1-152) FGAM synthase PurL, PurS-like domain {Salmonella typhimurium [TaxId: 90371]}
Probab=2.16 E-value=1.3e+02 Score=24.10 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=11.9
Q ss_pred hhhccCcccccccccccc
Q 013424 383 LGVQLGKMNIAAWASKDE 400 (443)
Q Consensus 383 LG~Qlgk~nIaaWASkEE 400 (443)
.|.++| .|..|+||--
T Consensus 77 V~PR~g--tiSPWSSKAt 92 (152)
T d1t3ta3 77 VTPRPG--TISPWSSKAT 92 (152)
T ss_dssp EEECTT--CCCHHHHHHH
T ss_pred Eeeccc--cccchHHHHH
Confidence 466777 7999999743
Done!