Query 013425
Match_columns 443
No_of_seqs 213 out of 2396
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 1.7E-83 3.6E-88 640.3 33.4 372 48-442 200-574 (574)
2 cd06204 CYPOR NADPH cytochrome 100.0 3.4E-81 7.4E-86 646.5 45.3 385 43-442 3-416 (416)
3 cd06203 methionine_synthase_re 100.0 6.2E-81 1.3E-85 641.5 43.4 376 48-442 1-398 (398)
4 cd06202 Nitric_oxide_synthase 100.0 3.5E-80 7.5E-85 637.2 45.5 384 48-443 1-403 (406)
5 cd06207 CyPoR_like NADPH cytoc 100.0 2.3E-80 4.9E-85 634.8 43.6 378 48-442 1-382 (382)
6 KOG1158 NADP/FAD dependent oxi 100.0 3.1E-81 6.7E-86 659.5 36.2 390 43-442 243-645 (645)
7 COG0369 CysJ Sulfite reductase 100.0 2.9E-79 6.3E-84 645.6 39.6 367 40-442 216-587 (587)
8 cd06206 bifunctional_CYPOR The 100.0 7.6E-78 1.6E-82 616.5 43.9 373 48-442 1-384 (384)
9 PRK10953 cysJ sulfite reductas 100.0 2.7E-75 5.8E-80 623.4 44.4 364 40-442 232-600 (600)
10 cd06199 SiR Cytochrome p450- l 100.0 1.7E-74 3.6E-79 586.7 40.3 354 48-442 1-360 (360)
11 TIGR01931 cysJ sulfite reducta 100.0 1.1E-73 2.5E-78 613.2 43.5 363 41-442 230-597 (597)
12 PRK06214 sulfite reductase; Pr 100.0 2.3E-73 4.9E-78 597.7 41.9 362 41-442 164-530 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 2.5E-48 5.5E-53 369.1 20.6 214 42-260 5-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 1.1E-42 2.3E-47 351.8 28.8 272 37-442 82-367 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 7.4E-40 1.6E-44 319.9 30.3 215 219-442 47-267 (267)
16 PLN03116 ferredoxin--NADP+ red 100.0 8.6E-37 1.9E-41 304.2 30.1 211 219-442 80-307 (307)
17 TIGR03224 benzo_boxA benzoyl-C 100.0 2.6E-36 5.6E-41 311.3 31.3 271 36-442 133-411 (411)
18 cd06208 CYPOR_like_FNR These f 100.0 1.4E-36 3.1E-41 299.7 22.4 223 206-442 42-286 (286)
19 cd06200 SiR_like1 Cytochrome p 100.0 1.3E-36 2.9E-41 293.5 19.4 209 206-442 33-245 (245)
20 cd06201 SiR_like2 Cytochrome p 100.0 2.7E-34 5.9E-39 283.9 28.1 188 220-442 100-289 (289)
21 cd00322 FNR_like Ferredoxin re 99.9 1.3E-27 2.9E-32 225.8 14.0 185 206-412 24-213 (223)
22 PRK10926 ferredoxin-NADP reduc 99.9 1.3E-27 2.7E-32 231.3 12.3 184 206-412 32-228 (248)
23 cd06189 flavin_oxioreductase N 99.9 2.3E-27 4.9E-32 225.7 13.3 180 206-412 27-212 (224)
24 cd06188 NADH_quinone_reductase 99.9 4.3E-27 9.4E-32 231.8 14.8 179 220-412 86-271 (283)
25 cd06211 phenol_2-monooxygenase 99.9 5.3E-27 1.2E-31 225.3 14.1 182 205-412 36-226 (238)
26 cd06209 BenDO_FAD_NAD Benzoate 99.9 5.6E-27 1.2E-31 223.5 14.0 177 206-411 32-214 (228)
27 PRK08051 fre FMN reductase; Va 99.9 5.4E-27 1.2E-31 224.6 13.7 181 205-412 30-217 (232)
28 cd06190 T4MO_e_transfer_like T 99.9 4.4E-27 9.6E-32 224.6 12.7 184 205-412 24-218 (232)
29 cd06195 FNR1 Ferredoxin-NADP+ 99.9 5.1E-27 1.1E-31 225.7 12.4 186 205-413 25-224 (241)
30 PRK07609 CDP-6-deoxy-delta-3,4 99.9 6.4E-27 1.4E-31 236.3 13.3 179 206-411 133-319 (339)
31 PRK11872 antC anthranilate dio 99.9 1.1E-26 2.3E-31 234.8 14.4 179 206-412 138-323 (340)
32 PRK05464 Na(+)-translocating N 99.9 1.4E-26 3.1E-31 239.4 14.9 181 218-412 208-395 (409)
33 PRK13289 bifunctional nitric o 99.9 1.2E-26 2.6E-31 239.2 14.3 182 206-412 186-380 (399)
34 TIGR01941 nqrF NADH:ubiquinone 99.9 1.8E-26 3.9E-31 238.4 15.1 181 218-412 204-391 (405)
35 cd06187 O2ase_reductase_like T 99.9 2.2E-26 4.8E-31 218.4 14.3 180 206-412 25-212 (224)
36 cd06210 MMO_FAD_NAD_binding Me 99.9 2.4E-26 5.1E-31 220.2 13.8 181 206-412 36-223 (236)
37 cd06212 monooxygenase_like The 99.9 2.2E-26 4.7E-31 220.0 13.4 180 206-412 31-219 (232)
38 PRK10684 HCP oxidoreductase, N 99.9 2.4E-26 5.2E-31 231.6 14.2 183 205-412 37-225 (332)
39 cd06191 FNR_iron_sulfur_bindin 99.9 2.5E-26 5.3E-31 219.5 13.0 177 206-411 29-218 (231)
40 cd06213 oxygenase_e_transfer_s 99.9 5.8E-26 1.3E-30 216.4 13.8 177 206-411 29-214 (227)
41 PRK08345 cytochrome-c3 hydroge 99.9 4.8E-26 1E-30 225.1 13.5 177 206-412 39-234 (289)
42 cd06194 FNR_N-term_Iron_sulfur 99.9 1.4E-25 3.1E-30 212.8 15.1 180 206-412 25-209 (222)
43 cd06184 flavohem_like_fad_nad_ 99.9 2.1E-25 4.6E-30 215.1 13.6 177 206-411 38-230 (247)
44 PRK05713 hypothetical protein; 99.9 1.4E-25 3E-30 224.1 12.5 174 206-412 120-296 (312)
45 cd06215 FNR_iron_sulfur_bindin 99.9 2.7E-25 5.8E-30 212.0 13.5 178 206-411 29-218 (231)
46 cd06196 FNR_like_1 Ferredoxin 99.9 3.1E-25 6.7E-30 210.0 11.8 176 205-412 28-208 (218)
47 cd06216 FNR_iron_sulfur_bindin 99.9 4.5E-25 9.7E-30 212.5 13.0 179 206-412 47-232 (243)
48 cd06221 sulfite_reductase_like 99.9 7E-25 1.5E-29 212.8 13.2 179 205-412 28-212 (253)
49 cd06217 FNR_iron_sulfur_bindin 99.9 9.8E-25 2.1E-29 208.6 11.7 181 206-412 32-223 (235)
50 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 1.1E-24 2.4E-29 221.1 12.2 184 206-412 34-229 (352)
51 cd06198 FNR_like_3 NAD(P) bind 99.9 1.8E-24 4E-29 204.5 12.8 174 206-412 24-203 (216)
52 cd06214 PA_degradation_oxidore 99.9 2.5E-24 5.4E-29 206.7 13.7 181 206-411 34-227 (241)
53 cd06218 DHOD_e_trans FAD/NAD b 99.9 2.4E-24 5.2E-29 208.1 12.8 171 205-412 25-202 (246)
54 cd06183 cyt_b5_reduct_like Cyt 99.9 4.5E-24 9.7E-29 203.6 13.0 182 206-411 30-223 (234)
55 PRK08221 anaerobic sulfite red 99.9 5.9E-24 1.3E-28 207.4 12.4 174 205-412 33-214 (263)
56 cd06185 PDR_like Phthalate dio 99.9 1.3E-23 2.9E-28 197.6 13.2 171 205-412 26-198 (211)
57 PTZ00319 NADH-cytochrome B5 re 99.9 1.5E-23 3.1E-28 208.4 13.3 194 206-412 65-290 (300)
58 TIGR02911 sulfite_red_B sulfit 99.9 1.5E-23 3.3E-28 204.3 12.7 176 205-412 31-212 (261)
59 PTZ00274 cytochrome b5 reducta 99.9 2.6E-23 5.6E-28 208.2 14.6 180 206-408 83-281 (325)
60 COG1018 Hmp Flavodoxin reducta 99.9 4.5E-23 9.7E-28 200.8 14.0 178 206-413 36-219 (266)
61 COG2871 NqrF Na+-transporting 99.9 7.2E-23 1.6E-27 193.7 12.3 185 219-417 210-401 (410)
62 PRK00054 dihydroorotate dehydr 99.9 6.8E-23 1.5E-27 198.4 11.7 165 206-412 33-203 (250)
63 cd06220 DHOD_e_trans_like2 FAD 99.9 1.5E-22 3.2E-27 194.0 12.1 164 205-412 24-189 (233)
64 cd06219 DHOD_e_trans_like1 FAD 99.9 1.7E-22 3.6E-27 195.5 11.9 170 206-411 28-201 (248)
65 PRK06222 ferredoxin-NADP(+) re 99.9 1.8E-22 3.9E-27 198.9 11.7 171 206-412 29-203 (281)
66 COG0543 UbiB 2-polyprenylpheno 99.9 3.9E-22 8.4E-27 193.4 13.4 177 205-413 36-215 (252)
67 cd06192 DHOD_e_trans_like FAD/ 99.9 4.9E-22 1.1E-26 191.5 11.4 170 206-413 26-201 (243)
68 cd06197 FNR_like_2 FAD/NAD(P) 99.9 8.6E-22 1.9E-26 187.2 10.7 144 219-411 59-211 (220)
69 PLN02252 nitrate reductase [NA 99.9 2.4E-21 5.2E-26 215.4 13.5 191 206-411 666-877 (888)
70 KOG0534 NADH-cytochrome b-5 re 99.8 2.5E-20 5.4E-25 181.1 15.1 160 218-404 98-267 (286)
71 PRK05802 hypothetical protein; 99.8 7.7E-21 1.7E-25 190.3 10.7 168 206-412 96-276 (320)
72 PTZ00306 NADH-dependent fumara 99.8 1.5E-20 3.2E-25 216.4 12.5 185 205-412 948-1151(1167)
73 COG4097 Predicted ferric reduc 99.8 3.5E-20 7.5E-25 181.7 10.6 174 206-412 244-423 (438)
74 PRK12778 putative bifunctional 99.8 1.4E-19 3.1E-24 200.7 12.6 170 206-411 29-202 (752)
75 cd06193 siderophore_interactin 99.8 3.7E-19 7.9E-24 170.8 9.7 157 218-411 62-219 (235)
76 cd06186 NOX_Duox_like_FAD_NADP 99.8 5.9E-19 1.3E-23 165.9 8.9 159 206-411 26-197 (210)
77 PF00175 NAD_binding_1: Oxidor 99.8 1.5E-18 3.2E-23 146.0 9.5 104 292-407 1-109 (109)
78 PRK12779 putative bifunctional 99.8 5.7E-18 1.2E-22 190.6 14.3 181 206-412 678-869 (944)
79 PRK12775 putative trifunctiona 99.7 2.9E-17 6.3E-22 186.3 12.1 169 206-411 29-202 (1006)
80 PLN02292 ferric-chelate reduct 99.5 2.4E-14 5.1E-19 155.4 12.3 173 206-402 353-550 (702)
81 PLN02844 oxidoreductase/ferric 99.5 2.5E-14 5.5E-19 155.6 12.3 176 206-402 340-539 (722)
82 PLN02631 ferric-chelate reduct 99.5 1.6E-14 3.4E-19 156.5 9.8 142 206-366 336-492 (699)
83 KOG3378 Globins and related he 99.2 1.1E-11 2.5E-16 117.4 3.1 175 206-415 182-371 (385)
84 PF08030 NAD_binding_6: Ferric 98.6 8.7E-08 1.9E-12 85.6 7.8 72 289-366 3-79 (156)
85 KOG0039 Ferric reductase, NADH 98.3 1.4E-06 3.1E-11 95.2 9.4 125 206-343 383-536 (646)
86 PF00970 FAD_binding_6: Oxidor 98.3 1E-07 2.3E-12 78.7 0.2 65 206-282 31-98 (99)
87 PRK06567 putative bifunctional 98.3 1E-06 2.2E-11 98.6 7.1 81 206-301 820-907 (1028)
88 COG2375 ViuB Siderophore-inter 97.6 0.00095 2.1E-08 64.7 12.7 165 218-423 85-250 (265)
89 PF08021 FAD_binding_9: Sidero 91.5 0.11 2.4E-06 44.4 1.9 53 218-281 65-117 (117)
90 PF08022 FAD_binding_8: FAD-bi 91.1 0.035 7.6E-07 46.4 -1.6 61 206-279 31-102 (105)
91 cd06208 CYPOR_like_FNR These f 77.3 5.3 0.00012 39.3 6.1 44 45-89 8-52 (286)
92 cd06200 SiR_like1 Cytochrome p 64.1 15 0.00033 35.2 5.8 42 49-90 3-44 (245)
93 PF00970 FAD_binding_6: Oxidor 61.0 24 0.00052 28.3 5.7 37 48-89 3-41 (99)
94 PF04954 SIP: Siderophore-inte 42.9 59 0.0013 27.4 5.4 96 289-411 3-101 (119)
95 cd06196 FNR_like_1 Ferredoxin 41.8 46 0.00099 30.8 5.0 38 48-91 4-41 (218)
96 cd06212 monooxygenase_like The 40.7 58 0.0012 30.5 5.5 38 48-90 4-42 (232)
97 PF11132 SplA: Transcriptional 37.9 23 0.00049 27.6 1.7 16 77-92 5-20 (75)
98 cd06217 FNR_iron_sulfur_bindin 37.8 56 0.0012 30.5 5.0 38 48-90 5-43 (235)
99 PF04703 FaeA: FaeA-like prote 36.1 97 0.0021 23.3 4.9 26 414-439 22-47 (62)
100 COG3937 Uncharacterized conser 35.7 46 0.001 27.9 3.4 40 396-436 17-56 (108)
101 cd06184 flavohem_like_fad_nad_ 35.0 84 0.0018 29.7 5.7 39 48-91 10-50 (247)
102 KOG4723 Uncharacterized conser 34.8 55 0.0012 30.8 4.1 116 318-443 18-140 (248)
103 PRK14841 undecaprenyl pyrophos 33.2 1.2E+02 0.0027 29.1 6.4 59 358-416 53-117 (233)
104 cd06213 oxygenase_e_transfer_s 31.3 93 0.002 29.0 5.3 37 48-90 4-40 (227)
105 cd06215 FNR_iron_sulfur_bindin 29.7 97 0.0021 28.8 5.1 37 48-89 2-39 (231)
106 cd06209 BenDO_FAD_NAD Benzoate 29.3 1.2E+02 0.0025 28.3 5.6 38 48-90 5-43 (228)
107 PF13580 SIS_2: SIS domain; PD 28.5 1E+02 0.0022 26.7 4.6 38 374-412 20-57 (138)
108 cd06190 T4MO_e_transfer_like T 28.3 77 0.0017 29.6 4.2 29 62-91 9-37 (232)
109 cd06214 PA_degradation_oxidore 28.3 1.1E+02 0.0023 28.7 5.2 37 48-89 5-44 (241)
110 KOG0025 Zn2+-binding dehydroge 28.3 34 0.00075 34.1 1.7 62 75-147 95-160 (354)
111 COG3142 CutC Uncharacterized p 28.1 5.5E+02 0.012 24.7 9.8 39 298-342 35-75 (241)
112 PF11272 DUF3072: Protein of u 27.9 1.4E+02 0.0031 22.1 4.4 41 393-434 9-54 (57)
113 cd06218 DHOD_e_trans FAD/NAD b 27.6 76 0.0016 30.3 4.0 36 50-90 2-37 (246)
114 cd06187 O2ase_reductase_like T 26.7 1.1E+02 0.0023 28.4 4.7 35 50-90 2-36 (224)
115 cd06189 flavin_oxioreductase N 26.3 1.3E+02 0.0027 28.1 5.2 37 48-90 2-38 (224)
116 PRK00054 dihydroorotate dehydr 26.1 1.3E+02 0.0028 28.7 5.3 38 48-91 8-45 (250)
117 PF11074 DUF2779: Domain of un 25.8 74 0.0016 27.7 3.2 60 141-202 47-116 (130)
118 cd06211 phenol_2-monooxygenase 25.7 1.5E+02 0.0033 27.8 5.7 40 46-90 7-48 (238)
119 cd06191 FNR_iron_sulfur_bindin 25.5 1.2E+02 0.0027 28.2 5.0 38 48-90 2-40 (231)
120 PRK12446 undecaprenyldiphospho 25.2 97 0.0021 31.4 4.5 25 288-312 2-28 (352)
121 PRK07609 CDP-6-deoxy-delta-3,4 25.2 1.3E+02 0.0029 30.0 5.4 38 48-90 106-144 (339)
122 COG5017 Uncharacterized conser 25.2 3.2E+02 0.0068 24.3 6.8 104 290-398 1-124 (161)
123 PRK14830 undecaprenyl pyrophos 24.5 2.9E+02 0.0063 26.8 7.4 27 388-414 108-134 (251)
124 PF07583 PSCyt2: Protein of un 24.3 2.6E+02 0.0055 26.4 6.8 31 130-160 19-50 (208)
125 PF02080 TrkA_C: TrkA-C domain 24.0 71 0.0015 23.7 2.5 30 72-103 42-71 (71)
126 PRK14842 undecaprenyl pyrophos 23.6 2.1E+02 0.0046 27.6 6.2 59 357-415 57-121 (241)
127 PRK14840 undecaprenyl pyrophos 23.4 2.2E+02 0.0048 27.7 6.3 59 358-416 72-136 (250)
128 cd06183 cyt_b5_reduct_like Cyt 23.1 1.6E+02 0.0035 27.2 5.4 39 48-91 2-42 (234)
129 PRK14833 undecaprenyl pyrophos 22.1 2.4E+02 0.0053 27.1 6.3 60 357-416 53-118 (233)
130 PRK14837 undecaprenyl pyrophos 21.5 3E+02 0.0064 26.5 6.6 60 357-416 55-120 (230)
131 PRK10310 PTS system galactitol 21.4 51 0.0011 26.8 1.3 11 291-301 5-15 (94)
132 cd06219 DHOD_e_trans_like1 FAD 21.4 1.6E+02 0.0035 28.0 5.0 38 48-90 2-39 (248)
133 PRK08051 fre FMN reductase; Va 21.3 1.7E+02 0.0036 27.5 5.0 36 48-89 6-41 (232)
134 cd06216 FNR_iron_sulfur_bindin 21.1 1.6E+02 0.0034 27.8 4.8 37 48-89 21-57 (243)
135 PRK14832 undecaprenyl pyrophos 20.8 3.1E+02 0.0067 26.7 6.7 28 388-415 104-131 (253)
136 PF06753 Bradykinin: Bradykini 20.7 26 0.00056 19.5 -0.4 10 297-306 6-15 (19)
137 cd06195 FNR1 Ferredoxin-NADP+ 20.3 1.7E+02 0.0037 27.5 4.9 37 48-90 1-37 (241)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=1.7e-83 Score=640.28 Aligned_cols=372 Identities=47% Similarity=0.785 Sum_probs=345.3
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccCCCCccccC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN 127 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~~~~~ 127 (443)
++++|++||+.+++++|+|++|+++++.+.|+|||++.|+|.|+.+.|++|++.+||++++...+.+......-| .+
T Consensus 200 k~~~N~rlT~~~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~~~~---~~ 276 (574)
T KOG1159|consen 200 KLVENRRLTSADHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDRSSP---LP 276 (574)
T ss_pred chhcceeecCcchhheeeEEEEecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCccccc---cc
Confidence 999999999999999999999999988999999999999999999999999999999998654443322211111 12
Q ss_pred CCCCcchHHHHHHHccccCCCCCCHHHHHHHHHhccChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 013425 128 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP 207 (443)
Q Consensus 128 ~~~~~~tl~~ll~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~l~d~L~~f~s~~~p 207 (443)
.++.|+|++.++++|+||++ +|+++||..|++|++++.||+||+++++++|.++|++|+.++++|++|+|++|+|+++|
T Consensus 277 ~~~~p~sl~~~lk~~~D~~S-vPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp 355 (574)
T KOG1159|consen 277 LLPNPLSLLNLLKYVLDFNS-VPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLP 355 (574)
T ss_pred ccCCchhHHHHHHHhccccc-CcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCC
Confidence 46899999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCCCCCC-CC
Q 013425 208 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PP 286 (443)
Q Consensus 208 ~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp-~~ 286 (443)
.++|++.+|.++||+|||||+|..+ .++|+|++|+|+|..++.|.|+||+||++|++ |+.|.+.+.+|.+.+| +.
T Consensus 356 ~~yl~d~~P~IrPR~fSIas~~~~~--~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~--g~~i~~~v~~g~l~~p~~~ 431 (574)
T KOG1159|consen 356 IDYLLDLLPVIRPRAFSIASSPGAH--HLELLVAIVEYKTILKEPRRGLCSNWLASLKP--GDEIPIKVRPGTLYFPSDL 431 (574)
T ss_pred HHHHHHhccccccceeeeccCCCCC--ceeEEEEEEEEeeeccccccchhHHHHhhcCC--CCeEEEEEecCccccCCCC
Confidence 9999999999999999999999764 49999999999999999999999999999999 9999999999999999 77
Q ss_pred CCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCc-cccCHHHHHHhhhcCCCccccCCCeEEEEEccCC
Q 013425 287 SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ 365 (443)
Q Consensus 287 ~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~ 365 (443)
++|+||||+|||||||||++++|..++. .+..||||||+++ ||+|.+||.+..+. ..+.|||||+
T Consensus 432 ~~PlImVGPGTGvAPfRa~i~er~~q~~----~~~~lFfGCR~K~~Df~y~~eW~~~~~~----------~~~~AFSRDq 497 (574)
T KOG1159|consen 432 NKPLIMVGPGTGVAPFRALIQERIYQGD----KENVLFFGCRNKDKDFLYEDEWTELNKR----------AFHTAFSRDQ 497 (574)
T ss_pred CCCeEEEcCCCCcccHHHHHHHHHhhcc----CCceEEEecccCCccccccchhhhhhcc----------hhhhhccccc
Confidence 9999999999999999999999998654 4669999999999 99999999988765 4456999999
Q ss_pred CCcccchhhHHHcHHHHHHhhcC-CCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 013425 366 PQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 442 (443)
Q Consensus 366 ~~k~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry~~dvW 442 (443)
++|.||||.|++.++.+|+++.+ ||.|||||+++.|+++|.++|.+|+.++++.++|.|. |++.|++.+||+.|+|
T Consensus 498 e~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 498 EQKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred ccceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 99999999999999999999986 9999999999999999999999999999999777777 9999999999999999
No 2
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=3.4e-81 Score=646.55 Aligned_cols=385 Identities=37% Similarity=0.687 Sum_probs=351.9
Q ss_pred Cccce-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCC-CCceEEEeeCCccCC
Q 013425 43 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLD-PDALITVQHKEMKNY 120 (443)
Q Consensus 43 ~~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~l~-~~~~v~i~~~~~~~~ 120 (443)
.++|. +|++|++||++ ++++++||+||+++++++|+|||+|+|+|+|+++.|+++|++||++ +++.|++........
T Consensus 3 ~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~~~~ 81 (416)
T cd06204 3 KNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDEPAS 81 (416)
T ss_pred CCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCcccc
Confidence 34667 99999999998 8999999999998778999999999999999999999999999999 889888865442111
Q ss_pred CCccccCCCCCcchHHHHHHHccccCCCCCCHHHHHHHHHhccChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHHhh
Q 013425 121 LPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLED 200 (443)
Q Consensus 121 ~~~~~~~~~~~~~tl~~ll~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~l~d~L~~ 200 (443)
. ..+++.++|++++|++||||++ +|++.||+.||.||+|+.+|++|..|++ +|.++|.+|+.++++|++|+|.+
T Consensus 82 ~----~~~~~~~~tl~~~l~~~~Dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~~ 155 (416)
T cd06204 82 K----KVPFPCPTTYRTALRHYLDITA-PVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQD 155 (416)
T ss_pred c----CCCCCCCccHHHHHHhhEEeCC-CCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHHh
Confidence 1 2246889999999999999999 9999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCC---CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCC------------
Q 013425 201 FPSVQ---MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD------------ 265 (443)
Q Consensus 201 f~s~~---~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~------------ 265 (443)
||+++ +|+++|++.+|+++||+|||||+|..+++.++|+|++++|+++.++.+.|+||+||+++.
T Consensus 156 f~s~~~~~~pl~~ll~~lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~ 235 (416)
T cd06204 156 FPSAKPTPPPFDFLIELLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPY 235 (416)
T ss_pred CcccCCCCCCHHHHHHhCccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccccc
Confidence 99999 999999999999999999999999878899999999999999888889999999999866
Q ss_pred ---------CCCCcEEEEEeecCCCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCC-CCCCEEEEEeecCCc-cc
Q 013425 266 ---------PQQGIYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNED-DF 333 (443)
Q Consensus 266 ---------~~~G~~v~i~~~~g~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~L~~G~R~~~-d~ 333 (443)
+ |+.|.+.++.|.|.+| +..+|+||||+|||||||+||++++......+ ..++++||||||+++ |+
T Consensus 236 ~~~~~~~~~~--g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ 313 (416)
T cd06204 236 YLSGPRKKGG--GSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDF 313 (416)
T ss_pred ccccccccCC--CCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCccc
Confidence 7 9999999999999999 67799999999999999999999987543211 237999999999994 99
Q ss_pred cCHHHHHHhhhcCCCccccCCCeEEEEEccCCCCcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHHH
Q 013425 334 LYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV 413 (443)
Q Consensus 334 ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i~ 413 (443)
+|++||++|.+.++.+ +++++|||+++.++||||+|.++.+.+++++.++++|||||++..|+++|.++|.+|+
T Consensus 314 ly~~el~~~~~~~~~~------~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~ 387 (416)
T cd06204 314 IYKDELEEYAKLGGLL------ELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEIL 387 (416)
T ss_pred chHHHHHHHHHcCCce------EEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHH
Confidence 9999999999873456 8999999988779999999999888999888778999999998449999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 013425 414 SKEGEASRDSAANWLKALQRAGRYHVEAW 442 (443)
Q Consensus 414 ~~~~~~~~~~a~~~l~~l~~~~Ry~~dvW 442 (443)
++++++++++|++|+++|+++|||++|||
T Consensus 388 ~~~~~~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 388 AEQGGMTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCeeEecC
Confidence 99999999999999999999999999999
No 3
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=6.2e-81 Score=641.49 Aligned_cols=376 Identities=31% Similarity=0.594 Sum_probs=341.4
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCC--CCceEEEeeCC--cc--CCC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLD--PDALITVQHKE--MK--NYL 121 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~l~--~~~~v~i~~~~--~~--~~~ 121 (443)
.|.+|++||+++++++++||+||+++++++|+|||+|+|+|+|++++|++++++||++ +++.++++... .. ..+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T cd06203 1 PISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKKKNAKV 80 (398)
T ss_pred CcccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCcccccccc
Confidence 3789999999999999999999998778999999999999999999999999999999 77888886421 11 122
Q ss_pred CccccCCCCCcchHHHHHHHccccCCCCCCHHHHHHHHHhccChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHHhhC
Q 013425 122 PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDF 201 (443)
Q Consensus 122 ~~~~~~~~~~~~tl~~ll~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~l~d~L~~f 201 (443)
...+|.++|++++|++||||++ +|+++||+.||.||+|+.+|++|.+|++.+|.++|.+|+.+.++|++|+|++|
T Consensus 81 ----~~~~p~~~tl~~ll~~~~Dl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f 155 (398)
T cd06203 81 ----PVHIPKVVTLRTILTWCLDIRA-IPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAF 155 (398)
T ss_pred ----CCCCCCCccHHHHHHHhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhC
Confidence 2246788999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCC-----CCCCcEEEEEe
Q 013425 202 PSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD-----PQQGIYIPAWF 276 (443)
Q Consensus 202 ~s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~-----~~~G~~v~i~~ 276 (443)
|++++|++++++.+|+++||+|||||+|..+++.++|+|+++.+++ .|+||+||+++. + |+.|.+.+
T Consensus 156 ~s~~~pl~~ll~~lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~--G~~v~i~~ 227 (398)
T cd06203 156 PSCRPPLSLLIEHLPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSH--GVKVPFYL 227 (398)
T ss_pred CCCCCCHHHHHHhCccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCC--CCEEEEEE
Confidence 9999999999999999999999999999877899999999987654 799999999987 8 99999999
Q ss_pred e-cCCCCCC-C-CCCCeEEEeCCccchhHHHHHHHHHHhcC---CCCCCCEEEEEeecCCc-cccCHHHHHHhhhcCCCc
Q 013425 277 Q-KGSLPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSS---SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVF 349 (443)
Q Consensus 277 ~-~g~F~lp-~-~~~piImIa~GTGIAPfrs~lq~~~~~~~---~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l 349 (443)
+ .|.|.+| + ..+|+||||+||||||||||+|++..... .+..++++||||||+++ |++|++||++|.+. |.+
T Consensus 228 ~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~-~~~ 306 (398)
T cd06203 228 RSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEE-GIL 306 (398)
T ss_pred ecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHc-CCC
Confidence 5 5789998 5 67999999999999999999999876321 11347999999999995 99999999999988 666
Q ss_pred cccCCCeEEEEEccCCC---CcccchhhHHHcHHHHHHhhc-CCCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHHHH
Q 013425 350 SEAKGGGFYVAFSRKQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 425 (443)
Q Consensus 350 ~~~~~~~~~~a~Sr~~~---~k~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~ 425 (443)
. ++++||||+++ .++||||.|.++.+.+++++. ++++|||||++..|+++|+++|.+|+.+.+++++++|+
T Consensus 307 ~-----~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~ 381 (398)
T cd06203 307 T-----RLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAK 381 (398)
T ss_pred c-----eEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 4 89999999887 489999999999999999875 58999999997699999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEeec
Q 013425 426 NWLKALQRAGRYHVEAW 442 (443)
Q Consensus 426 ~~l~~l~~~~Ry~~dvW 442 (443)
+|+++|+++|||++|+|
T Consensus 382 ~~~~~l~~~gRy~~dvw 398 (398)
T cd06203 382 KLLARLRKEDRYLEDVW 398 (398)
T ss_pred HHHHHHHHcCCeeeecC
Confidence 99999999999999999
No 4
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=3.5e-80 Score=637.19 Aligned_cols=384 Identities=33% Similarity=0.594 Sum_probs=341.4
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecC-CCcccCCCCEEEEccCCCHHHHHHHHHHcCCCC--CceEEEeeCCccCC---C
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDP--DALITVQHKEMKNY---L 121 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~-~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~l~~--~~~v~i~~~~~~~~---~ 121 (443)
+|++|++||++++.++++||+||+++ ++++|+|||+|+|+|+|+++.|++++++|++.. ++.+.++....... .
T Consensus 1 ~~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T cd06202 1 KVISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGI 80 (406)
T ss_pred CcceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCccccc
Confidence 47899999999999999999999985 689999999999999999999999999999854 56777754222111 0
Q ss_pred -CccccCCCCCcchHHHHHHHccccCCCCCCHHHHHHHHHhccChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHHhh
Q 013425 122 -PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLED 200 (443)
Q Consensus 122 -~~~~~~~~~~~~tl~~ll~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~l~d~L~~ 200 (443)
..+....++.++|++++|++||||++ +|+++||+.||.||+|+.+|++|+.|++ +.+.|.+|+.++++|++|+|.+
T Consensus 81 ~~~~~~~~~~~~~tl~~ll~~~lDl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~ 157 (406)
T cd06202 81 IKTWTPHERLPPCTLRQALTRYLDITT-PPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEE 157 (406)
T ss_pred cccccccCCCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHh
Confidence 00112345669999999999999999 9999999999999999999999999997 8889999999999999999999
Q ss_pred CCCCCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCC--CcccCCcccccccCCCCCCCcEEEEEeec
Q 013425 201 FPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY--KRKRTGLCSVWLAGLDPQQGIYIPAWFQK 278 (443)
Q Consensus 201 f~s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~--~~~~~G~~S~~L~~l~~~~G~~v~i~~~~ 278 (443)
||++++|+++|++.+|+++||+|||||+|..+++.++|+|+++.|.+.. ++.+.|+||+||+++++ |+.|.+.++.
T Consensus 158 f~s~~~~~~~ll~~lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~~~~ 235 (406)
T cd06202 158 FPSLQVPASLLLTQLPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTP--GDTVPCFVRS 235 (406)
T ss_pred CCcCCCCHHHHHHhCcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCC--CCEEEEEEee
Confidence 9999999999999999999999999999987789999999999998754 34678999999999999 9999999865
Q ss_pred -CCCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhc-----CCCCCCCEEEEEeecCCc-cccCHHHHHHhhhcCCCcc
Q 013425 279 -GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQS-----SSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFS 350 (443)
Q Consensus 279 -g~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~-----~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~ 350 (443)
|.|++| +..+|+||||+||||||||||+|++.... ..+..++++||||||+++ |++|++||++|.+. |.+.
T Consensus 236 ~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~-~~~~ 314 (406)
T cd06202 236 APSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNK-GVLT 314 (406)
T ss_pred CCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHc-CCCc
Confidence 489999 77899999999999999999999986431 111348999999999995 99999999999988 7665
Q ss_pred ccCCCeEEEEEccCCC-CcccchhhHHHcHHHHHHhh-cCCCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013425 351 EAKGGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL 428 (443)
Q Consensus 351 ~~~~~~~~~a~Sr~~~-~k~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~l 428 (443)
++++||||++. .++||||.|.++.+.+++++ ..+++|||||++ .|+++|.++|.+|+++.++++.++|++|+
T Consensus 315 -----~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~-~M~~~V~~~L~~i~~~~~~~s~~~A~~~~ 388 (406)
T cd06202 315 -----EVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGDV-TMAEDVSQTIQRILAEHGNMSAEEAEEFI 388 (406)
T ss_pred -----eEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCC-chHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 89999999875 58999999999999999988 459999999998 89999999999999999999999999999
Q ss_pred HHHHHcCCEEEeecC
Q 013425 429 KALQRAGRYHVEAWS 443 (443)
Q Consensus 429 ~~l~~~~Ry~~dvWs 443 (443)
++|+++|||++|||+
T Consensus 389 ~~l~~~gRy~~dvw~ 403 (406)
T cd06202 389 LKLRDENRYHEDIFG 403 (406)
T ss_pred HHHHHcCCeEEEecc
Confidence 999999999999996
No 5
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=2.3e-80 Score=634.76 Aligned_cols=378 Identities=43% Similarity=0.737 Sum_probs=346.7
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccCCCCccccC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN 127 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~~~~~ 127 (443)
.|++|++||+.+++++|+||+|++++++++|+|||+|+|+|+|+++.|++++++||+++++.+++++.... .. ..
T Consensus 1 ~v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~-~~----~~ 75 (382)
T cd06207 1 KVTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQQ-RG----KP 75 (382)
T ss_pred CcceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEeccccc-cc----CC
Confidence 37899999999999999999999987899999999999999999999999999999999999988754311 11 23
Q ss_pred CCCCcchHHHHHHHccccCCCCCCHHHHHHHHHhccChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 013425 128 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP 207 (443)
Q Consensus 128 ~~~~~~tl~~ll~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~l~d~L~~f~s~~~p 207 (443)
++|.|+|++++|++||||++ +|++++|+.||.||+|+.+|++|..+++.++.+.|.+| ++++++|+|.+||++++|
T Consensus 76 ~~~~~~t~~~ll~~~~dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~ 151 (382)
T cd06207 76 PFPEPISVRQLLKKFLDIFG-KPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPT 151 (382)
T ss_pred CCCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCC
Confidence 46899999999999999999 99999999999999999999999999999999999888 789999999999999999
Q ss_pred HHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCCCCCC-CC
Q 013425 208 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PP 286 (443)
Q Consensus 208 ~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp-~~ 286 (443)
++.|++.+|+++||+|||||+|..+++.++|+|+++.|.++.++.+.|+||+||.++++ |+.|.+.+|.|.|++| +.
T Consensus 152 ~~~ll~~lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~~p~g~F~lp~~~ 229 (382)
T cd06207 152 LEQLLELCPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKV--GQRVTVFIKKSSFKLPKDP 229 (382)
T ss_pred HHHHHHhCcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCC--CCEEEEEEECCcccCCCCC
Confidence 99999999999999999999998778999999999999988788889999999999999 9999999999999999 77
Q ss_pred CCCeEEEeCCccchhHHHHHHHHHHhcCCC-CCCCEEEEEeecCC-ccccCHHHHHHhhhcCCCccccCCCeEEEEEccC
Q 013425 287 SVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK 364 (443)
Q Consensus 287 ~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~ 364 (443)
.+|+||||+||||||||||++++......+ ..++++||||||++ .|++|++||++|.+. +... ++++||||+
T Consensus 230 ~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~-~~~~-----~~~~a~Srd 303 (382)
T cd06207 230 KKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKS-GVLT-----TLGTAFSRD 303 (382)
T ss_pred CCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhC-CCCc-----eEEEEecCC
Confidence 899999999999999999999987642111 34899999999999 599999999999987 5543 899999999
Q ss_pred CCCcccchhhHHHcHHHHHHhhcCC-CEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 013425 365 QPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 442 (443)
Q Consensus 365 ~~~k~yVqd~l~~~~~~l~~~l~~~-~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry~~dvW 442 (443)
+++++||||.+.++.+.+++++.++ ++|||||++..|+++|+++|.+++.+.+++++++|++|+++|+++|||++|||
T Consensus 304 ~~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 304 QPKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CCCceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 8889999999999999999988765 49999999933999999999999999999999999999999999999999999
No 6
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=3.1e-81 Score=659.48 Aligned_cols=390 Identities=38% Similarity=0.706 Sum_probs=355.3
Q ss_pred Cccce-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEE--EeeCCccC
Q 013425 43 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALIT--VQHKEMKN 119 (443)
Q Consensus 43 ~~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~v~--i~~~~~~~ 119 (443)
-.+|. .++.+..|..+.+.+.++|++++..++++.|+||||++|+|.|+.+.|++++++|++++...+. +......+
T Consensus 243 ~~~~~~~~~~~~~l~~~~~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~ 322 (645)
T KOG1158|consen 243 VFPFPALVVVNLALSTPSSDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTN 322 (645)
T ss_pred cccchhhhhHHhhccCCCCceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCC
Confidence 34455 6777777887778899999999999889999999999999999999999999999999774443 33322111
Q ss_pred CCCccccCCCCCcchHHHHHHHccccCCCCCCHHHHHHHHHhccChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHHh
Q 013425 120 YLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLE 199 (443)
Q Consensus 120 ~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~l~d~L~ 199 (443)
..+.+.+++++.|+|++++|++|+||++ +|+++++..||.||+|+.||++|+.|+++.|..+|.+++....+|++|||.
T Consensus 323 ~~~~~~~~p~~~~~t~~~~l~~~ldi~~-~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~ 401 (645)
T KOG1158|consen 323 PTPAKKPHPFPLPTTLRTALTHYLDITG-PPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLE 401 (645)
T ss_pred CCccccCCCCCCCCcHHHHHHHhccccC-CCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHh
Confidence 3444456678999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCC-cccCCcccccccCCCCCCCcEEE--EEe
Q 013425 200 DFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIP--AWF 276 (443)
Q Consensus 200 ~f~s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~--i~~ 276 (443)
+||++++|+++|+..+|.++||+|||||||..+++.+++++.+|+|.++.+ ..++|+||+||+++++ |+.+. +..
T Consensus 402 ~fps~kpP~~~ll~~lp~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~--~~~~~~~~~~ 479 (645)
T KOG1158|consen 402 AFPSCKPPLPHLLELLPRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKP--GEKVPNPVPV 479 (645)
T ss_pred hCCCCCCCHHHHHHhCccccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCC--ccccCcceee
Confidence 999999999999999999999999999999999999999999999999876 6778999999999999 99998 666
Q ss_pred ecCCCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCC---CCCCEEEEEeecCCc-cccCHHHHHHhhhcCCCccc
Q 013425 277 QKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG---PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSE 351 (443)
Q Consensus 277 ~~g~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~---~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~ 351 (443)
....|+|| ++.+|+||||+||||||||||+|+|......+ ..+ +|||||||+++ |++|++||+++.+. |.++
T Consensus 480 ~~s~frlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~-~~l~- 556 (645)
T KOG1158|consen 480 GKSMFRLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKA-GILT- 556 (645)
T ss_pred cccceecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhc-Ccch-
Confidence 67899999 89999999999999999999999999876543 224 99999999999 99999999999777 8887
Q ss_pred cCCCeEEEEEccCC-CCcccchhhHHHcHHHHHHhhcC-CCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013425 352 AKGGGFYVAFSRKQ-PQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLK 429 (443)
Q Consensus 352 ~~~~~~~~a~Sr~~-~~k~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~l~ 429 (443)
++.+||||++ ++|.||||.|++++++||+++.+ +++|||||+++.|+++|.++|.+|+++.++++.++|..+++
T Consensus 557 ----~l~~A~SReq~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk 632 (645)
T KOG1158|consen 557 ----RLDVAFSREQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLK 632 (645)
T ss_pred ----hheeeeeccCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHH
Confidence 8999999998 78999999999999999999965 99999999996699999999999999999999999999999
Q ss_pred HHHHcCCEEEeec
Q 013425 430 ALQRAGRYHVEAW 442 (443)
Q Consensus 430 ~l~~~~Ry~~dvW 442 (443)
+|++++||++|||
T Consensus 633 ~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 633 QLKKSKRYIEDVW 645 (645)
T ss_pred HhhhccccccccC
Confidence 9999999999999
No 7
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-79 Score=645.63 Aligned_cols=367 Identities=40% Similarity=0.715 Sum_probs=345.7
Q ss_pred cccCccce-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCcc
Q 013425 40 NNKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK 118 (443)
Q Consensus 40 ~~~~~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~ 118 (443)
...+.+|. .+..|++|+..+++++++||+|++++++++|+|||+++|||+|+++.|+++|..+||++++.|.+.
T Consensus 216 ~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~----- 290 (587)
T COG0369 216 YSKPAPSVAILLENRKLTGRDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD----- 290 (587)
T ss_pred ccccCcceeEeeccccCCccccCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-----
Confidence 46677788 999999999999999999999999988999999999999999999999999999999999777331
Q ss_pred CCCCccccCCCCCcchHHHHHHHccccCCCCCCHHHHHHHHHhccChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHH
Q 013425 119 NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVL 198 (443)
Q Consensus 119 ~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~l~d~L 198 (443)
+.++++.++|++|+||+. .| ++|+..|+.|+.++..++.|+.++ ..++..|.. +++++|+|
T Consensus 291 -----------~~~~~~~~~l~~~~e~~~-~~-~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L 351 (587)
T COG0369 291 -----------GETLPLVEALKSHFEFTS-AP-KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVL 351 (587)
T ss_pred -----------CCcchHHHHHHHheeccc-ch-HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHH
Confidence 578899999999999999 77 999999999999999999999987 566777765 89999999
Q ss_pred hhCCCCCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCC-CCCCCcEEEEEee
Q 013425 199 EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGL-DPQQGIYIPAWFQ 277 (443)
Q Consensus 199 ~~f~s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l-~~~~G~~v~i~~~ 277 (443)
.+|+++++|.++|+..+|+++||+|||||++..+++++||||++|+|.++ ++.+.|+||+||+++ .. |+.|.|+++
T Consensus 352 ~~f~~~~l~~~~li~~l~~lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~--g~~i~v~v~ 428 (587)
T COG0369 352 RDFPPAKLPAEELIDLLPPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEE--GDTIPVFVQ 428 (587)
T ss_pred hhccccCCCHHHHHHhCccCCCeeeEeccCCCCCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcC--CCeEEEEec
Confidence 99999999999999999999999999999999999999999999999998 448999999999975 45 999999998
Q ss_pred cC-CCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCc-cccCHHHHHHhhhcCCCccccCC
Q 013425 278 KG-SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKG 354 (443)
Q Consensus 278 ~g-~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~ 354 (443)
.+ +|++| ++.+||||||+||||||||||+|+|..++.+ |++|||||||+.+ ||||++||++|.+. |.++
T Consensus 429 ~n~nf~lp~~~~~PiIMIG~GTGIAPFRafvq~r~~~~~~---gk~wLfFG~R~~~~DfLY~~Ewe~~~~~-G~~~---- 500 (587)
T COG0369 429 PNKNFRLPEDPETPIIMIGPGTGIAPFRAFVQERAANGAE---GKNWLFFGCRHFTEDFLYQEEWEEYLKD-GVLT---- 500 (587)
T ss_pred cCCccccCCCCCCceEEEcCCCCchhHHHHHHHHHhcccc---CceEEEecCCCCccchhhHHHHHHHHhc-CCce----
Confidence 87 89999 7779999999999999999999999998877 7999999999977 99999999999998 8776
Q ss_pred CeEEEEEccCCCCcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013425 355 GGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRA 434 (443)
Q Consensus 355 ~~~~~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~ 434 (443)
++.+|||||+++|.||||+|++++++||+|+.++|+|||||+++.|+++|.++|.+|+.+.++++.|+|.+++++|+++
T Consensus 501 -~l~~AfSRdq~~KiYVQd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~ 579 (587)
T COG0369 501 -RLDLAFSRDQEEKIYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKE 579 (587)
T ss_pred -eEEEEEeecCCCCccHHHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CCEEEeec
Q 013425 435 GRYHVEAW 442 (443)
Q Consensus 435 ~Ry~~dvW 442 (443)
+||++|||
T Consensus 580 ~RY~~DVy 587 (587)
T COG0369 580 GRYQRDVY 587 (587)
T ss_pred CceeeecC
Confidence 99999999
No 8
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=7.6e-78 Score=616.52 Aligned_cols=373 Identities=30% Similarity=0.555 Sum_probs=339.1
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccCCCCccccC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN 127 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~~~~~ 127 (443)
+|++|++||+++++++|+||+|+++ ++++|+|||+|+|+|+|+++.|+++|++||+++++.|++.+......+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~-~~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~~~~~------ 73 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLP-DGMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGSATGL------ 73 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECC-CCCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCCCCCC------
Confidence 5899999999999999999999997 589999999999999999999999999999999999988763332233
Q ss_pred CCCCcchHHHHHHHccccCCCCCCHHHHHHHHHhccChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 013425 128 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP 207 (443)
Q Consensus 128 ~~~~~~tl~~ll~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~l~d~L~~f~s~~~p 207 (443)
+++.|+|++++|++|+||++ +|+++||+.||.||+|+.+|++|..++ .++|.+++.++++|++|+|.+||++++|
T Consensus 74 p~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~~ 148 (384)
T cd06206 74 PLGTPISVSELLSSYVELSQ-PATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIALP 148 (384)
T ss_pred CCCCCEEHHHHHHhhccccC-CCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCCC
Confidence 34789999999999999999 999999999999999999999999886 3678889989999999999999999999
Q ss_pred HHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCC-cccCCcccccccCCCCCCCcEEEEE--eecCCCCCC
Q 013425 208 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIPAW--FQKGSLPRP 284 (443)
Q Consensus 208 ~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~i~--~~~g~F~lp 284 (443)
++++++++|+++||+|||||+|..+++.++|+|+++++.++.+ +.+.|+||+||+++++ |+.|.+. ++.|.|.+|
T Consensus 149 ~~~~l~~~p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~i~~p~g~F~l~ 226 (384)
T cd06206 149 LATFLAMLPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRP--GDSIHVSVRPSHSAFRPP 226 (384)
T ss_pred HHHHHHhCcccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCC--CCeEEEEEecCCCccCCC
Confidence 9999999999999999999999777889999999999887554 5679999999999999 9999976 456899998
Q ss_pred -CCCCCeEEEeCCccchhHHHHHHHHHHhcCCC-CCCCEEEEEeecCC-ccccCHHHHHHhhhcCCCccccCCCeEEEEE
Q 013425 285 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 361 (443)
Q Consensus 285 -~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 361 (443)
+..+|+||||+|||||||+||++++......+ ..++++||||||++ .|++|++||++|.+. +++ ++++++
T Consensus 227 ~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~~------~l~~a~ 299 (384)
T cd06206 227 SDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAA-GVV------SVRRAY 299 (384)
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHC-CCe------EEEEEe
Confidence 67899999999999999999999987642211 23789999999999 599999999999986 888 999999
Q ss_pred ccCCCC-cccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCC
Q 013425 362 SRKQPQ-KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEG----EASRDSAANWLKALQRAGR 436 (443)
Q Consensus 362 Sr~~~~-k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i~~~~~----~~~~~~a~~~l~~l~~~~R 436 (443)
||+++. ++||||.|.+..+.+++++.++++|||||++ .|+++|.++|.+++.+.+ +++.++|++|+++|+++||
T Consensus 300 Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~-~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gr 378 (384)
T cd06206 300 SRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGDG-RMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGR 378 (384)
T ss_pred cccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECCC-chHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCC
Confidence 998764 8999999999888999888779999999999 699999999999999999 9999999999999999999
Q ss_pred EEEeec
Q 013425 437 YHVEAW 442 (443)
Q Consensus 437 y~~dvW 442 (443)
|++|+|
T Consensus 379 y~~dvw 384 (384)
T cd06206 379 YATDVF 384 (384)
T ss_pred eeeecC
Confidence 999999
No 9
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=2.7e-75 Score=623.45 Aligned_cols=364 Identities=30% Similarity=0.507 Sum_probs=332.4
Q ss_pred cccCccce-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCcc
Q 013425 40 NNKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK 118 (443)
Q Consensus 40 ~~~~~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~ 118 (443)
.++.++|. +|++|++||+.++.++|+||+||+++++++|+|||+|+|+|.|+++.|+++|++||+++++.|++.
T Consensus 232 ~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~----- 306 (600)
T PRK10953 232 YSKEAPLTASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVD----- 306 (600)
T ss_pred CCCCCCeEEEEEEEeecCCCCCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeC-----
Confidence 34556777 999999999999999999999999878999999999999999999999999999999999888663
Q ss_pred CCCCccccCCCCCcchHHHHHHHccccCCCCCCHHHHHHHHHhccChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHH
Q 013425 119 NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVL 198 (443)
Q Consensus 119 ~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~l~d~L 198 (443)
..++|++++|++|+||+. |++.||+.+|.++.++. |..+.. +.+.+..|.. .++++|+|
T Consensus 307 -----------~~~~tl~~~l~~~~dl~~--~~~~~l~~~a~~~~~~~----l~~~~~--~~~~~~~~~~--~~~~~dvL 365 (600)
T PRK10953 307 -----------GKTLPLAEALQWHFELTV--NTANIVENYATLTRSET----LLPLVG--DKAALQHYAA--TTPIVDMV 365 (600)
T ss_pred -----------CCCCCHHHHHHHhcccCC--CcHHHHHHHHHhCCCHH----HHHHhc--CHHHHHHHhc--CCCHHHHH
Confidence 246799999999999999 57899999999998754 344443 5566777764 79999999
Q ss_pred hhCCCCCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEee
Q 013425 199 EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQ 277 (443)
Q Consensus 199 ~~f~s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~ 277 (443)
.+|| ++++.++++..+|+++||+|||||+|..++++++|+|++|.|.. .++.+.|+||+||+ ++++ |+.|.|.++
T Consensus 366 ~~f~-~~~~~~q~l~ll~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~--Gd~v~v~~~ 441 (600)
T PRK10953 366 RFAP-AQLDAEQLIGLLRPLTPRLYSIASSQAEVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEE--EGEVRVFIE 441 (600)
T ss_pred HhCC-CCCCHHHHHHhCCCCCCeeeecccCCCCCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCC--CCEEEEEec
Confidence 9998 78999999999999999999999999877899999999999985 47788999999998 5899 999999997
Q ss_pred c-CCCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCc-cccCHHHHHHhhhcCCCccccCC
Q 013425 278 K-GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKG 354 (443)
Q Consensus 278 ~-g~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~ 354 (443)
. |.|++| ++.+|+||||+||||||||||+|++...... +++|||||||++. ||+|++||++|.+. |.++
T Consensus 442 ~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~---~~~~LffG~R~~~~D~lY~~El~~~~~~-g~l~---- 513 (600)
T PRK10953 442 HNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAP---GKNWLFFGNPHFTEDFLYQVEWQRYVKE-GLLT---- 513 (600)
T ss_pred cCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCCC---CCeEEEeeccCCccchhHHHHHHHHHHc-CCcc----
Confidence 6 489999 7889999999999999999999999877655 8999999999966 99999999999998 8887
Q ss_pred CeEEEEEccCCCCcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013425 355 GGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRA 434 (443)
Q Consensus 355 ~~~~~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~ 434 (443)
++++||||++.+|+||||+|.++.+++|+++.++++|||||+++.|+++|+++|.+|++++++++.++|++|+++|+++
T Consensus 514 -~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~ 592 (600)
T PRK10953 514 -RIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVE 592 (600)
T ss_pred -eEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 8999999999889999999999999999999889999999998789999999999999999999999999999999999
Q ss_pred CCEEEeec
Q 013425 435 GRYHVEAW 442 (443)
Q Consensus 435 ~Ry~~dvW 442 (443)
|||++|||
T Consensus 593 ~RY~~Dvy 600 (600)
T PRK10953 593 RRYQRDVY 600 (600)
T ss_pred CCeeeecC
Confidence 99999999
No 10
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=1.7e-74 Score=586.75 Aligned_cols=354 Identities=33% Similarity=0.590 Sum_probs=320.6
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccCCCCccccC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN 127 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~~~~~ 127 (443)
+|++|++||+++++++++||+||+++++++|+|||+|+|+|+|++++|++++++||+++++.|++
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~--------------- 65 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST--------------- 65 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC---------------
Confidence 57899999999999999999999997789999999999999999999999999999999887642
Q ss_pred CCCCcchHHHHHHHccccCCCCCCHHHHHHHHHhccChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHHhhCC--CCC
Q 013425 128 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP--SVQ 205 (443)
Q Consensus 128 ~~~~~~tl~~ll~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~l~d~L~~f~--s~~ 205 (443)
.++.++|++++|++|+||++ + .+..|+.||+++.++++|+. ++.+.|.+ .++++|+|++|| +++
T Consensus 66 ~~~~~~t~~~~l~~~~dl~~-~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 66 VGGGTLPLREALIKHYEITT-L----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred CCCCcccHHHHHHhhhhhcc-C----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 12678999999999999999 4 45568899999888888775 57777654 589999999999 999
Q ss_pred CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCC-CCCCCcEEEEEeecC-CCCC
Q 013425 206 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGL-DPQQGIYIPAWFQKG-SLPR 283 (443)
Q Consensus 206 ~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l-~~~~G~~v~i~~~~g-~F~l 283 (443)
+|.++++..+|+++||+|||||+|..+++.++|+|++++|.+. ++.+.|+||+||+++ ++ |+.|.+.++.| .|++
T Consensus 132 ~~~gq~l~l~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~--Gd~v~v~~~~~~~F~l 208 (360)
T cd06199 132 LTAEELLDLLRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKE--GDTVPVFVQPNPHFRL 208 (360)
T ss_pred CCHHHHHHhCcCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCC--CCEEEEEEecCCCcCC
Confidence 9999999999999999999999998778999999999999874 466889999999975 68 99999998664 8999
Q ss_pred C-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCc-cccCHHHHHHhhhcCCCccccCCCeEEEEE
Q 013425 284 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 361 (443)
Q Consensus 284 p-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 361 (443)
| +..+|+||||+|||||||+||+|++...... ++++||||||+++ |++|++||+++.+. +... ++++||
T Consensus 209 p~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~---~~~~L~~G~R~~~~D~~y~~el~~~~~~-~~~~-----~~~~a~ 279 (360)
T cd06199 209 PEDPDAPIIMVGPGTGIAPFRAFLQEREATGAK---GKNWLFFGERHFATDFLYQDELQQWLKD-GVLT-----RLDTAF 279 (360)
T ss_pred CCCCCCCEEEEecCcChHHHHHHHHHHHhccCC---CcEEEEEcCCCCccchhHHHHHHHHHHc-CCCe-----EEEEEE
Confidence 9 6789999999999999999999998875544 8999999999985 99999999999987 4443 899999
Q ss_pred ccCCCCcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEee
Q 013425 362 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEA 441 (443)
Q Consensus 362 Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry~~dv 441 (443)
||++.+++||||.|.++.+.+++++.++++|||||+++.|+++|+++|.+|+++.++++.++|++|+++|+++|||++|+
T Consensus 280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 359 (360)
T cd06199 280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDV 359 (360)
T ss_pred ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 99988889999999999999999887789999999987899999999999999999999999999999999999999999
Q ss_pred c
Q 013425 442 W 442 (443)
Q Consensus 442 W 442 (443)
|
T Consensus 360 w 360 (360)
T cd06199 360 Y 360 (360)
T ss_pred C
Confidence 9
No 11
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=1.1e-73 Score=613.24 Aligned_cols=363 Identities=34% Similarity=0.584 Sum_probs=331.5
Q ss_pred ccCccce-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccC
Q 013425 41 NKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKN 119 (443)
Q Consensus 41 ~~~~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~ 119 (443)
.+.++|. +|++|++||+.+++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.|++.
T Consensus 230 ~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~------ 303 (597)
T TIGR01931 230 SKQNPFRAEVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG------ 303 (597)
T ss_pred cCCCCeEEEEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC------
Confidence 4556777 999999999999999999999999988999999999999999999999999999999999988763
Q ss_pred CCCccccCCCCCcchHHHHHHHccccCCCCCCHHHHHHHHHhccChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHHh
Q 013425 120 YLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLE 199 (443)
Q Consensus 120 ~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~l~d~L~ 199 (443)
+.++|++++|++|+||+. +++.||+.||++++|+..++.| + +.+.+.+|+. +++++|+|.
T Consensus 304 ----------~~~~tl~~~l~~~~dl~~--~~~~~l~~la~~~~~~~l~~~~----~--~~~~~~~y~~--~~~~~dvl~ 363 (597)
T TIGR01931 304 ----------GKTIPLFEALITHFELTQ--NTKPLLKAYAELTGNKELKALI----A--DNEKLKAYIQ--NTPLIDLIR 363 (597)
T ss_pred ----------CCCcCHHHHHHhceeCCC--CCHHHHHHHHHhcCCHHHHHHh----c--CHHHHHHHHc--CCCHHHHHH
Confidence 357899999999999999 5899999999999998655433 2 5677888875 789999999
Q ss_pred hCCCCCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccC-CCCCCCcEEEEEeec
Q 013425 200 DFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK 278 (443)
Q Consensus 200 ~f~s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~ 278 (443)
+|| ++++.++++.++|+++||+|||||+|..++++++|+|++|+|.. .++.+.|.||+||++ +++ |++|.++++.
T Consensus 364 ~fp-~~~~~gq~v~ll~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~~l~~--Gd~v~v~~~~ 439 (597)
T TIGR01931 364 DYP-ADLDAEQLISLLRPLTPRLYSISSSQSEVGDEVHLTVGVVRYQA-HGRARLGGASGFLAERLKE--GDTVPVYIEP 439 (597)
T ss_pred HCC-CCCCHHHHHHhCcccCCceeeeccCcccCCCEEEEEEEEEEecC-CCCccccchhHHHHhhCCC--CCEEEEEEee
Confidence 999 88999999999999999999999999877899999999999985 477889999999996 999 9999999965
Q ss_pred -CCCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCc-cccCHHHHHHhhhcCCCccccCCC
Q 013425 279 -GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGG 355 (443)
Q Consensus 279 -g~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~ 355 (443)
|.|++| ++.+|+||||+||||||||||+|++..++.. +++|||||||+.. |++|++||++|.+. +.++
T Consensus 440 ~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~---g~~~LffG~R~~~~D~ly~~El~~~~~~-~~l~----- 510 (597)
T TIGR01931 440 NDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGAK---GKNWLFFGNPHFTTDFLYQVEWQNYLKK-GVLT----- 510 (597)
T ss_pred CCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccCC---CCEEEEECCCCCCcchhHHHHHHHHHHc-CCCc-----
Confidence 589999 7789999999999999999999999887655 8999999999955 99999999999988 7775
Q ss_pred eEEEEEccCCCCcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 013425 356 GFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAG 435 (443)
Q Consensus 356 ~~~~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~ 435 (443)
++++||||++.+++||||+|.++.+++++++.++++|||||++..|+++|.++|.+|++++++++.++|++|+++|+++|
T Consensus 511 ~l~~afSRd~~~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~ 590 (597)
T TIGR01931 511 KMDLAFSRDQAEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEK 590 (597)
T ss_pred eeEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 89999999887899999999999999999988899999999656999999999999999999999999999999999999
Q ss_pred CEEEeec
Q 013425 436 RYHVEAW 442 (443)
Q Consensus 436 Ry~~dvW 442 (443)
||++|||
T Consensus 591 RY~~DVy 597 (597)
T TIGR01931 591 RYQRDVY 597 (597)
T ss_pred CeeeecC
Confidence 9999999
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=2.3e-73 Score=597.65 Aligned_cols=362 Identities=33% Similarity=0.582 Sum_probs=324.4
Q ss_pred ccCccce-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccC
Q 013425 41 NKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKN 119 (443)
Q Consensus 41 ~~~~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~ 119 (443)
...++|. +|++|++||+++++++++||+||+++++++|+|||+|+|+|+|+++.|+++|++||+++++.+
T Consensus 164 ~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~--------- 234 (530)
T PRK06214 164 SRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI--------- 234 (530)
T ss_pred CcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc---------
Confidence 5566777 999999999999999999999999978899999999999999999999999999999977533
Q ss_pred CCCccccCCCCCcchHHHHHHHccccCCCCCCHHHHHHHHHhccChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHHh
Q 013425 120 YLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLE 199 (443)
Q Consensus 120 ~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~l~d~L~ 199 (443)
.++|++++|++|+||++ +| +.||+.|+.+++++. |++|+.|++.+..+.. ....+++|+|+
T Consensus 235 -----------~~~tlr~~L~~~~Dl~~-~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~-----~~~~~vldvL~ 295 (530)
T PRK06214 235 -----------GGKTLREALLEDVSLGP-AP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD-----AATLDVLAALE 295 (530)
T ss_pred -----------CCccHHHHHHHheeccC-CC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh-----hhhCcHHHHHH
Confidence 36799999999999999 55 889999999988766 7788888763322221 12468999999
Q ss_pred hCCCCCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEeec
Q 013425 200 DFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQK 278 (443)
Q Consensus 200 ~f~s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~ 278 (443)
+||++++|++++++.+|+++||+|||||+|..+++.++|+|++|+|.+ .++.+.|+||+||+ ++++ |+.|.++++.
T Consensus 296 ~fp~~~~~~~~lle~lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~--Gd~V~v~i~~ 372 (530)
T PRK06214 296 KFPGIRPDPEAFVEALDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAP--GTRVRVYVQK 372 (530)
T ss_pred hCCCCCCCHHHHHhhcCCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCC--CCEEEEEecC
Confidence 999999999999999999999999999999777899999999999985 46778999999997 7999 9999999854
Q ss_pred C-CCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCc-cccCHHHHHHhhhcCCCccccCCC
Q 013425 279 G-SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGG 355 (443)
Q Consensus 279 g-~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~ 355 (443)
+ .|++| +..+|+||||+||||||||||+|++...... ++++||||||+.+ |++|++||++|.+. |.++
T Consensus 373 ~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~~---g~~~LffG~R~~~~D~ly~dEL~~l~~~-g~l~----- 443 (530)
T PRK06214 373 AHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKAP---GRNWLFFGHQRSATDFFYEDELNGLKAA-GVLT----- 443 (530)
T ss_pred CCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcCC---CCeEEEEEecCChhhhHHHHHHHHHHHh-CCce-----
Confidence 3 49999 7778999999999999999999998876544 7999999998876 99999999999988 7665
Q ss_pred eEEEEEccCCCCcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 013425 356 GFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAG 435 (443)
Q Consensus 356 ~~~~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~ 435 (443)
+++++|||++.+++||||.|.++.+++++++.++++|||||+++.|+++|+++|.+|+++++++++++|++|+++|+++|
T Consensus 444 ~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~~g 523 (530)
T PRK06214 444 RLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAG 523 (530)
T ss_pred EEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 79999999998899999999999999999988899999999986799999999999999999999999999999999999
Q ss_pred CEEEeec
Q 013425 436 RYHVEAW 442 (443)
Q Consensus 436 Ry~~dvW 442 (443)
||++|||
T Consensus 524 RY~~Dvw 530 (530)
T PRK06214 524 RYQADVY 530 (530)
T ss_pred CEEEecC
Confidence 9999999
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=2.5e-48 Score=369.07 Aligned_cols=214 Identities=44% Similarity=0.755 Sum_probs=182.1
Q ss_pred cCccce-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccCC
Q 013425 42 KAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNY 120 (443)
Q Consensus 42 ~~~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~ 120 (443)
..++|. +|++|++||+++++++++||+|++++++++|+|||+|+|+|+|+++.|++++++||+++++.|+++.......
T Consensus 5 ~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~~~~ 84 (219)
T PF00667_consen 5 RKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQNNS 84 (219)
T ss_dssp TTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESSTTSS
T ss_pred CCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEecccccc
Confidence 456677 9999999999999999999999999889999999999999999999999999999999999999987664311
Q ss_pred CCccccCCCCCcchHHHHHHHccccCCCCCCHHHHHHHHHhccChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHHhh
Q 013425 121 LPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLED 200 (443)
Q Consensus 121 ~~~~~~~~~~~~~tl~~ll~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~l~d~L~~ 200 (443)
...+++.++||+++|++|+||++ +|++.||+.||.|++|+.+|++|++|++.+|.++|.+|+.+.+++++|+|.+
T Consensus 85 ----~~~~~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~dil~~ 159 (219)
T PF00667_consen 85 ----VKPPFPSPITLRDLLTHYLDITS-PPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDILED 159 (219)
T ss_dssp ----CCSSSSSSEEHHHHHHHTB-TSS-B--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHHHHH
T ss_pred ----cccccccceeeeeeeeeeeeccc-ccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHHHhh
Confidence 13457999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccc
Q 013425 201 FPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW 260 (443)
Q Consensus 201 f~s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~ 260 (443)
||++++|+++|++.+|+++||+|||||+|..+++.++|||++|+|++..++.+.|+||+|
T Consensus 160 fps~~~pl~~ll~~lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 160 FPSCKPPLEELLELLPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp STTBTC-HHHHHHHS-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred CcccCCCHHHhhhhCCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=1.1e-42 Score=351.82 Aligned_cols=272 Identities=25% Similarity=0.430 Sum_probs=230.7
Q ss_pred CCccccCccce-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeC
Q 013425 37 SNYNNKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHK 115 (443)
Q Consensus 37 ~~~~~~~~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~v~i~~~ 115 (443)
-|.....++|. +|++|.+|+..+...+++||+|+.+ ..+.|.||.++.|.|+..
T Consensus 82 ~n~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~-~~~~f~~GQfv~I~~~g~------------------------ 136 (367)
T PLN03115 82 VNKFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTE-GEIPYREGQSIGVIPDGI------------------------ 136 (367)
T ss_pred eEeeccCCCeEEEEEeecccccCCCCCceEEEEEcCC-CCCCcCCCCEEEEEcCCc------------------------
Confidence 46677778899 9999999999888889999999976 478999999999966421
Q ss_pred CccCCCCccccCCCCCcchHHHHHHHccccCCCCCCHHHHHHHHHhccChhHHHHHHhhcCCCChHHHHHHHHhcCCCHH
Q 013425 116 EMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVL 195 (443)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~l~ 195 (443)
|..+
T Consensus 137 ----------------------------~~~g------------------------------------------------ 140 (367)
T PLN03115 137 ----------------------------DKNG------------------------------------------------ 140 (367)
T ss_pred ----------------------------CCCC------------------------------------------------
Confidence 1001
Q ss_pred HHHhhCCCCCCCHHHHHHhcCCCCcceeecCCCCCC---CCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEE
Q 013425 196 EVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI 272 (443)
Q Consensus 196 d~L~~f~s~~~p~~~ll~~lp~~~pR~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v 272 (443)
.+..+|+|||||+|.. .++.++|+|+++.|.+..+....|+||+||+++++ ||.|
T Consensus 141 --------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~--Gd~V 198 (367)
T PLN03115 141 --------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKP--GAEV 198 (367)
T ss_pred --------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCC--cCEE
Confidence 1135799999999843 25789999999999876677789999999999999 9999
Q ss_pred EEEeecCCCC-CC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCC--CCCCEEEEEeecCCccccCHHHHHHhhhcCC-
Q 013425 273 PAWFQKGSLP-RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG- 347 (443)
Q Consensus 273 ~i~~~~g~F~-lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g- 347 (443)
.+.+|.|.|. +| ++.+|+||||+|||||||+||++++....... ..++++||||||+.+|++|++||++|.+.++
T Consensus 199 ~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~ 278 (367)
T PLN03115 199 KITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPE 278 (367)
T ss_pred EEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCC
Confidence 9999999754 56 67789999999999999999999875543211 1368999999999999999999999988765
Q ss_pred CccccCCCeEEEEEccCCC----CcccchhhHHHcHHHHHHhhcC-CCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHH
Q 013425 348 VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRD 422 (443)
Q Consensus 348 ~l~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~ 422 (443)
++ +++.++||+++ .++||||.|.++.+++++++.. +++|||||++ .|.++|.++|.++....+ +
T Consensus 279 ~f------~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp~-~M~~~V~~~l~~l~~~~g-~--- 347 (367)
T PLN03115 279 NF------RLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGLK-GMEKGIDDIMVSLAAKDG-I--- 347 (367)
T ss_pred CE------EEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCCH-HHHHHHHHHHHHHHHHhC-c---
Confidence 78 99999999875 4789999999999999988864 7899999998 999999999999998864 3
Q ss_pred HHHHHHHHHHHcCCEEEeec
Q 013425 423 SAANWLKALQRAGRYHVEAW 442 (443)
Q Consensus 423 ~a~~~l~~l~~~~Ry~~dvW 442 (443)
++.+++++|+++|||+.|+|
T Consensus 348 ~~~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 348 DWFEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred cHHHHHHHHHHCCCeEEecC
Confidence 57899999999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=7.4e-40 Score=319.95 Aligned_cols=215 Identities=43% Similarity=0.762 Sum_probs=190.0
Q ss_pred CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecC-CCCCC-CCCCCeEEEeCC
Q 013425 219 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLPRP-PPSVPLILIGPG 296 (443)
Q Consensus 219 ~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g-~F~lp-~~~~piImIa~G 296 (443)
.+|+|||+|+|....+.++|+|+.+.++......+.|.+|+||+++++ |+.|.+.+|.| .|.++ +...|+||||+|
T Consensus 47 ~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~--Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgG 124 (267)
T cd06182 47 QPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQL--GAKVTVFIRPAPSFRLPKDPTTPIIMVGPG 124 (267)
T ss_pred CCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCC--CCEEEEEEecCCcccCCCCCCCCEEEEecC
Confidence 468999999996556899999999877665555677999999999999 99999999999 99998 667899999999
Q ss_pred ccchhHHHHHHHHHHhcCCC-CCCCEEEEEeecCC-ccccCHHHHHHhhhcCCCccccCCCeEEEEEccCCCC-cccchh
Q 013425 297 TGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-KVYVQH 373 (443)
Q Consensus 297 TGIAPfrs~lq~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~-k~yVqd 373 (443)
||||||+|+++++....... ..++++||||+|+. +|++|+++|++|.+.+.++ ++++++||++.. ++||++
T Consensus 125 tGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~------~~~~~~S~~~~~~~~~v~~ 198 (267)
T cd06182 125 TGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALT------RLDVAFSREQAEPKVYVQD 198 (267)
T ss_pred ccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcc------eEEEEEccCCCCCceehHH
Confidence 99999999999988631100 12789999999999 7999999999999874567 899999997764 789999
Q ss_pred hHHHcHHHHHHhhcCCCEEEEeCCCCc-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 013425 374 KMLEQSQRIWNLLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 442 (443)
Q Consensus 374 ~l~~~~~~l~~~l~~~~~iyvCG~~~~-M~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry~~dvW 442 (443)
.+.+..+.+++.+.+++.||||||+ . |.+.|.++|.+++++.++++.++|++++++|+++|||++|+|
T Consensus 199 ~l~~~~~~l~~~l~~~~~vyvCGp~-~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (267)
T cd06182 199 KLKEHAEELRRLLNEGAHIYVCGDA-KSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267 (267)
T ss_pred HHHHhHHHHHHHHhcCCEEEEECCc-ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeEEecC
Confidence 9988888877777677799999999 7 999999999999999999999999999999999999999999
No 16
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=8.6e-37 Score=304.17 Aligned_cols=211 Identities=28% Similarity=0.450 Sum_probs=176.0
Q ss_pred CcceeecCCCCCCC---CCeEEEEEEEEEecCCCCc----ccCCcccccccCCCCCCCcEEEEEeecCCCCC-C--CCCC
Q 013425 219 KTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKR----KRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPR-P--PPSV 288 (443)
Q Consensus 219 ~pR~YSIaSsp~~~---~~~i~l~V~~v~~~~~~~~----~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~l-p--~~~~ 288 (443)
..|+|||||+|... +..++|+|+++.|.++... .+.|.+|+||+++++ |+.|.+.+|.|.|.+ | +..+
T Consensus 80 ~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~f~~~~~~~~~~ 157 (307)
T PLN03116 80 NVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKP--GDKVQITGPSGKVMLLPEEDPNA 157 (307)
T ss_pred CceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCC--CCEEEEEEecCCceeCCCCCCCC
Confidence 47999999999432 2489999998876554322 268999999999999 999999999999876 4 3457
Q ss_pred CeEEEeCCccchhHHHHHHHHHHhcCC--CCCCCEEEEEeecCCccccCHHHHHHhhhcCC-CccccCCCeEEEEEccCC
Q 013425 289 PLILIGPGTGCAPFRGFVEERAIQSSS--GPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFYVAFSRKQ 365 (443)
Q Consensus 289 piImIa~GTGIAPfrs~lq~~~~~~~~--~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~~~a~Sr~~ 365 (443)
|+||||+|||||||+||++++...... +..++++||||+|+.+|++|.+||++|.+.++ ++ +++.++||++
T Consensus 158 ~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~------~~~~~~sr~~ 231 (307)
T PLN03116 158 THIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNF------RYDYALSREQ 231 (307)
T ss_pred cEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcE------EEEEEEccCC
Confidence 999999999999999999988764321 11268999999999999999999999988765 68 8999999976
Q ss_pred C----CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEee
Q 013425 366 P----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEA 441 (443)
Q Consensus 366 ~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry~~dv 441 (443)
. .++||++.|.+..+.++..+.+++.+|+|||+ .|++++.++|.+++.+. |+ +|++.++.|+++|||++|+
T Consensus 232 ~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp~-~mv~~v~~~L~~~~~~~-g~---~~~~~~~~l~~~~r~~~~~ 306 (307)
T PLN03116 232 KNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLK-GMMPGIQDTLKRVAEER-GE---SWEEKLSGLKKNKQWHVEV 306 (307)
T ss_pred cccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCCH-HHHHHHHHHHHHHHHHc-Cc---cHHHHHHHHHHcCceEEec
Confidence 4 36799999988777766666568899999998 99999999999988775 44 3678999999999999999
Q ss_pred c
Q 013425 442 W 442 (443)
Q Consensus 442 W 442 (443)
|
T Consensus 307 ~ 307 (307)
T PLN03116 307 Y 307 (307)
T ss_pred C
Confidence 9
No 17
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=2.6e-36 Score=311.30 Aligned_cols=271 Identities=26% Similarity=0.414 Sum_probs=220.2
Q ss_pred CCCccccCccce-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEee
Q 013425 36 LSNYNNKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQH 114 (443)
Q Consensus 36 ~~~~~~~~~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~v~i~~ 114 (443)
--|+++..+++. +|+++++|++.+...+|+||+|+.++....|+||.++.|.++..
T Consensus 133 ~~~~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~----------------------- 189 (411)
T TIGR03224 133 YVNLYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGT----------------------- 189 (411)
T ss_pred ccccccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCc-----------------------
Confidence 356777778888 99999999988777899999999875468899999998854320
Q ss_pred CCccCCCCccccCCCCCcchHHHHHHHccccCCCCCCHHHHHHHHHhccChhHHHHHHhhcCCCChHHHHHHHHhcCCCH
Q 013425 115 KEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTV 194 (443)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~l 194 (443)
+..+
T Consensus 190 -----------------------------~~~g----------------------------------------------- 193 (411)
T TIGR03224 190 -----------------------------DASG----------------------------------------------- 193 (411)
T ss_pred -----------------------------CcCC-----------------------------------------------
Confidence 0000
Q ss_pred HHHHhhCCCCCCCHHHHHHhcCCCCcceeecCCCCCCC---CCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcE
Q 013425 195 LEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIY 271 (443)
Q Consensus 195 ~d~L~~f~s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~---~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~ 271 (443)
.+..+|+|||+|+|... .+.++|+|+++.+ ...+....|.+|+||+++++ ||+
T Consensus 194 ---------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~--Gd~ 249 (411)
T TIGR03224 194 ---------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKK--GDK 249 (411)
T ss_pred ---------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCC--cCE
Confidence 11356999999987321 2579999998864 23455678999999999999 999
Q ss_pred EEEEeecCC-CCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCc
Q 013425 272 IPAWFQKGS-LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVF 349 (443)
Q Consensus 272 v~i~~~~g~-F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l 349 (443)
|.+.+|.|. |.+| ...+|+||||+|||||||+||++++......+..++++||||+|+.+|++|.+||+++.+. .+
T Consensus 250 v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~--~~ 327 (411)
T TIGR03224 250 VQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKD--FI 327 (411)
T ss_pred EEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcCCCCCEEEEEecCccccchHHHHHHHHHhc--Cc
Confidence 999999996 6677 4568999999999999999999998764221123799999999999999999999999865 35
Q ss_pred cccCCCeEEEEEccCCC-CcccchhhHHHcHHHHHHhhcC-CCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013425 350 SEAKGGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANW 427 (443)
Q Consensus 350 ~~~~~~~~~~a~Sr~~~-~k~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~ 427 (443)
++++++||+++ .++||||.+++..+.+++++.. +++||+||++ .|.++|.++|.++..+.+ +. ++++
T Consensus 328 ------~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp~-~M~~~v~~~L~~~~~~~~-~~---~~~~ 396 (411)
T TIGR03224 328 ------DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGLK-GMEEGVLDAFRDVCATNG-LS---WETL 396 (411)
T ss_pred ------eEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECCH-HHHHHHHHHHHHHHHHcC-cC---HHHH
Confidence 67789999654 5899999999888888877754 6899999998 999999999999997653 33 5679
Q ss_pred HHHHHHcCCEEEeec
Q 013425 428 LKALQRAGRYHVEAW 442 (443)
Q Consensus 428 l~~l~~~~Ry~~dvW 442 (443)
+++|+++|||+.|+|
T Consensus 397 ~~~l~~~~r~~~e~~ 411 (411)
T TIGR03224 397 EPRLRAEGRLHLETY 411 (411)
T ss_pred HHHHHHCCCeEEecC
Confidence 999999999999999
No 18
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=1.4e-36 Score=299.74 Aligned_cols=223 Identities=29% Similarity=0.465 Sum_probs=185.1
Q ss_pred CCHHHHHHhcCC--------CCcceeecCCCCCC---CCCeEEEEEEEEEecCCCC-cccCCcccccccCCCCCCCcEEE
Q 013425 206 MPIDWLVQLVPP--------LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIP 273 (443)
Q Consensus 206 ~p~~~ll~~lp~--------~~pR~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~ 273 (443)
.|||++...++. ...|+|||||+|.. +++.++|+|+++.+.++.. ..+.|.+|+||+++++ |+.|.
T Consensus 42 ~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~ 119 (286)
T cd06208 42 LEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKP--GDDVQ 119 (286)
T ss_pred cCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCC--CCEEE
Confidence 578886555442 24799999999854 2479999999987655432 4556999999999999 99999
Q ss_pred EEeecCCCCC-C-CCCCCeEEEeCCccchhHHHHHHHHHHhcC--CCCCCCEEEEEeecCCccccCHHHHHHhhhcCC-C
Q 013425 274 AWFQKGSLPR-P-PPSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-V 348 (443)
Q Consensus 274 i~~~~g~F~l-p-~~~~piImIa~GTGIAPfrs~lq~~~~~~~--~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~ 348 (443)
+.+|.|.|.+ | +..+|+||||+|||||||+||++++..... .+..++++||||+|+++|++|+++|+++.+.++ +
T Consensus 120 v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~ 199 (286)
T cd06208 120 ITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDN 199 (286)
T ss_pred EEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCc
Confidence 9999998765 4 456799999999999999999999876521 011268999999999999999999999998755 6
Q ss_pred ccccCCCeEEEEEccCCC----CcccchhhHHHcHHHHHHhhcC-CCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHH
Q 013425 349 FSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDS 423 (443)
Q Consensus 349 l~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~ 423 (443)
+ ++++++||++. .++||++.+.+..+.+++.+.. +..||+|||+ .|.++|.+.|.+++. ...+
T Consensus 200 ~------~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp~-~m~~~v~~~L~~~~~-----~~~~ 267 (286)
T cd06208 200 F------RIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGLK-GMEPGVDDALTSVAE-----GGLA 267 (286)
T ss_pred E------EEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCCc-hHHHHHHHHHHHHHh-----ccHH
Confidence 7 89999999764 4789999999887777777764 5699999998 999999999999987 2357
Q ss_pred HHHHHHHHHHcCCEEEeec
Q 013425 424 AANWLKALQRAGRYHVEAW 442 (443)
Q Consensus 424 a~~~l~~l~~~~Ry~~dvW 442 (443)
|++++++|+++|||..|+|
T Consensus 268 ~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 268 WEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHHHHHHHcCCeEEecC
Confidence 9999999999999999999
No 19
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=1.3e-36 Score=293.52 Aligned_cols=209 Identities=31% Similarity=0.410 Sum_probs=177.5
Q ss_pred CCHHHHHHhcCC-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccC-CCCCCCcEEEEEeec-CCCC
Q 013425 206 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK-GSLP 282 (443)
Q Consensus 206 ~p~~~ll~~lp~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~-g~F~ 282 (443)
.|||++...++. ..+|+|||||+|. ++.++|+|+.+... ..+.|.+|+||++ +++ |++|.+.+|. |.|.
T Consensus 33 ~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~~----~~~~G~~S~~L~~~~~~--Gd~v~i~gp~gg~F~ 104 (245)
T cd06200 33 QAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRHA----DGGLGLGSGWLTRHAPI--GASVALRLRENPGFH 104 (245)
T ss_pred cCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEeccC----CCCCeeechhhhhCCCC--CCEEEEEecCCCccc
Confidence 489987666653 6789999999985 47899999776321 1245999999986 589 9999999975 4798
Q ss_pred CCCCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCc-cccCHHHHHHhhhcCCCccccCCCeEEEEE
Q 013425 283 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 361 (443)
Q Consensus 283 lp~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 361 (443)
+|+..+|+||||+|||||||+||++++..... ++++||||+|+.+ |++|.+||++|.+.++++ ++++++
T Consensus 105 ~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~----~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~------~~~~~~ 174 (245)
T cd06200 105 LPDDGRPLILIGNGTGLAGLRSHLRARARAGR----HRNWLLFGERQAAHDFFCREELEAWQAAGHLA------RLDLAF 174 (245)
T ss_pred CCCCCCCEEEEecCcChHHHHHHHHHHHhccC----CCeEEEEecCCccccHhHHHHHHHHHHCCCcc------eEEEEE
Confidence 88666899999999999999999999876532 5799999999986 999999999999874555 899999
Q ss_pred ccCCCCcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEee
Q 013425 362 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEA 441 (443)
Q Consensus 362 Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry~~dv 441 (443)
|+++..++||++.+.++.+.+++++..+++||+|||++.|+++|.+.|.+++++. .+++|+++|||.+|+
T Consensus 175 s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l~~~~~~~----------~~~~~~~~~r~~~d~ 244 (245)
T cd06200 175 SRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVLDEILGEE----------AVEALLAAGRYRRDV 244 (245)
T ss_pred ccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHHHHHHHHH----------HHHHHHHCCCeEEec
Confidence 9988778999999998877777766668899999997789999999999999752 388999999999999
Q ss_pred c
Q 013425 442 W 442 (443)
Q Consensus 442 W 442 (443)
|
T Consensus 245 ~ 245 (245)
T cd06200 245 Y 245 (245)
T ss_pred C
Confidence 9
No 20
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=2.7e-34 Score=283.87 Aligned_cols=188 Identities=32% Similarity=0.539 Sum_probs=163.1
Q ss_pred cceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEe-ecCCCCCCCCCCCeEEEeCCcc
Q 013425 220 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF-QKGSLPRPPPSVPLILIGPGTG 298 (443)
Q Consensus 220 pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~-~~g~F~lp~~~~piImIa~GTG 298 (443)
+|+|||+|+|. .+.++|+|+. .+.|.+|+||+++++ |++|.+.+ +.|.|.+++..+|+||||+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~---------~~~G~~S~~L~~l~~--Gd~v~v~~~~~g~F~~~~~~~~lvlIAgGtG 166 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRK---------HPGGLCSGYLHGLKP--GDTIKAFIRPNPSFRPAKGAAPVILIGAGTG 166 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEe---------CCCccchhhHhhCCC--cCEEEEEeccCCCccCCCCCCCEEEEecCcC
Confidence 69999999984 4789999943 467999999999999 99999986 5678998766789999999999
Q ss_pred chhHHHHHHHHHHhcCCCCCCCEEEEEeecCCc-cccCHHHHHHhhhcCCCccccCCCeEEEEEccCCCCcccchhhHHH
Q 013425 299 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLE 377 (443)
Q Consensus 299 IAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~ 377 (443)
||||+||+++... . ++++||||+|+++ |++|++||++|.+.+.++ +++.++||+.. ++|||+.+..
T Consensus 167 IaP~~s~l~~~~~---~---~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~------~~~~~~s~~~~-~g~v~~~l~~ 233 (289)
T cd06201 167 IAPLAGFIRANAA---R---RPMHLYWGGRDPASDFLYEDELDQYLADGRLT------QLHTAFSRTPD-GAYVQDRLRA 233 (289)
T ss_pred HHHHHHHHHhhhc---c---CCEEEEEEecCcccchHHHHHHHHHHHcCCCc------eEEEEECCCCC-cccchhHHHH
Confidence 9999999998632 2 6899999999996 999999999998874556 78899999764 8999999988
Q ss_pred cHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 013425 378 QSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 442 (443)
Q Consensus 378 ~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry~~dvW 442 (443)
..+.+..++.+++.||+|||+ .|+++|.+.|.+|+.+.+ + -+..|+++|||.+|+|
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp~-~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGSR-AMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECCH-HHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 777777777778999999998 999999999999998754 2 2788899999999998
No 21
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.95 E-value=1.3e-27 Score=225.82 Aligned_cols=185 Identities=26% Similarity=0.396 Sum_probs=148.4
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCCCC
Q 013425 206 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 282 (443)
Q Consensus 206 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~ 282 (443)
.|||++...++. ...|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.++++ |++|.+.+|.|.|.
T Consensus 24 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~---------~~G~~s~~l~~~~~--G~~v~i~gP~G~~~ 91 (223)
T cd00322 24 KPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIV---------PGGPFSAWLHDLKP--GDEVEVSGPGGDFF 91 (223)
T ss_pred CCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEe---------CCCchhhHHhcCCC--CCEEEEECCCcccc
Confidence 589998887774 67899999999853 47899999653 46999999999999 99999999999987
Q ss_pred CC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEE
Q 013425 283 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 361 (443)
Q Consensus 283 lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 361 (443)
++ ...++++|||+|||||||++++++....... ++++|+||+|+.+|++|++||+++.+.+.++ ++++++
T Consensus 92 ~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~ 162 (223)
T cd00322 92 LPLEESGPVVLIAGGIGITPFRSMLRHLAADKPG---GEITLLYGARTPADLLFLDELEELAKEGPNF------RLVLAL 162 (223)
T ss_pred cCcccCCcEEEEecCCchhHHHHHHHHHHhhCCC---CcEEEEEecCCHHHhhHHHHHHHHHHhCCCe------EEEEEe
Confidence 66 6778999999999999999999998876444 7899999999999999999999999875778 899999
Q ss_pred ccCCCCcccchhhHHHcHHHHHHhh-cCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 362 SRKQPQKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 362 Sr~~~~k~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
++++....+.++.+........... ..+..+|+|||+ .|.+.+.+.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~-~m~~~~~~~L~~~ 213 (223)
T cd00322 163 SRESEAKLGPGGRIDREAEILALLPDDSGALVYICGPP-AMAKAVREALVSL 213 (223)
T ss_pred cCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 9877644333332221111111111 237899999999 9999999887664
No 22
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.95 E-value=1.3e-27 Score=231.34 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=144.0
Q ss_pred CCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeec-CCC
Q 013425 206 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQK-GSL 281 (443)
Q Consensus 206 ~p~~~ll~~lp--~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~-g~F 281 (443)
.|||++...++ . ...|+|||+|+|.. +.++|+|+. .+.|.+|+||+++++ |++|.+.+|. |.|
T Consensus 32 ~pGQfv~l~~~~~g~~~~R~ySias~p~~--~~l~~~ik~---------~~~G~~S~~L~~l~~--Gd~v~i~gp~~g~f 98 (248)
T PRK10926 32 TAGQFTKLGLEIDGERVQRAYSYVNAPDN--PDLEFYLVT---------VPEGKLSPRLAALKP--GDEVQVVSEAAGFF 98 (248)
T ss_pred CCCCEEEEEEecCCcEEEeeecccCCCCC--CeEEEEEEE---------eCCCCcChHHHhCCC--CCEEEEecCCCcce
Confidence 58998766553 2 24699999999853 579999854 367999999999999 9999999976 566
Q ss_pred CCC-C-CCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCC-CccccCCCeEE
Q 013425 282 PRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFY 358 (443)
Q Consensus 282 ~lp-~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~~ 358 (443)
.++ . ..+|+||||+|||||||+||+++....... +++.||||+|+.+|++|++||+++.+.++ ++ +++
T Consensus 99 ~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~------~v~ 169 (248)
T PRK10926 99 VLDEVPDCETLWMLATGTAIGPYLSILQEGKDLERF---KNLVLVHAARYAADLSYLPLMQELEQRYEGKL------RIQ 169 (248)
T ss_pred EccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCCC---CcEEEEEeCCcHHHHHHHHHHHHHHHhCcCCE------EEE
Confidence 666 3 347999999999999999999998654443 68999999999999999999999988763 78 899
Q ss_pred EEEccCCC---CcccchhhHHHc-HHHHHH-hh-cCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 359 VAFSRKQP---QKVYVQHKMLEQ-SQRIWN-LL-LSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 359 ~a~Sr~~~---~k~yVqd~l~~~-~~~l~~-~l-~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
+++||++. .+++|++.+.+. ...... .+ .++..+|+|||+ .|++++.+.|.+.
T Consensus 170 ~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~-~Mv~~~~~~l~~~ 228 (248)
T PRK10926 170 TVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNP-QMVRDTQQLLKET 228 (248)
T ss_pred EEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCH-HHHHHHHHHHHHh
Confidence 99998654 257887766432 111111 11 236899999999 9999999777653
No 23
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.95 E-value=2.3e-27 Score=225.70 Aligned_cols=180 Identities=26% Similarity=0.354 Sum_probs=149.6
Q ss_pred CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEeecCCCCCC
Q 013425 206 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPRP 284 (443)
Q Consensus 206 ~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~lp 284 (443)
.|||++...++....|+|||+|.|.. .+.++|+|+. ...|.+|+||. .+++ |++|.+.+|.|.|.++
T Consensus 27 ~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~~ 94 (224)
T cd06189 27 LAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRA---------VPGGSFSDYVFEELKE--NGLVRIEGPLGDFFLR 94 (224)
T ss_pred CCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEe---------cCCCccHHHHHHhccC--CCEEEEecCCccEEec
Confidence 58898887777777999999999853 5789999954 35699999987 5999 9999999999999887
Q ss_pred -CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEcc
Q 013425 285 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 363 (443)
Q Consensus 285 -~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 363 (443)
...+++||||+|||||||++++++....... .+++|+||+|+.+|++|++||+++.+.++++ +++.++|+
T Consensus 95 ~~~~~~ivliagG~GiaP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s~ 165 (224)
T cd06189 95 EDSDRPLILIAGGTGFAPIKSILEHLLAQGSK---RPIHLYWGARTEEDLYLDELLEAWAEAHPNF------TYVPVLSE 165 (224)
T ss_pred cCCCCCEEEEecCcCHHHHHHHHHHHHhcCCC---CCEEEEEecCChhhccCHHHHHHHHHhCCCe------EEEEEeCC
Confidence 5578999999999999999999998876543 6899999999999999999999999876788 88889998
Q ss_pred CCC----CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 364 KQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 364 ~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
+++ .++||++.+.+... -..+..+|+|||+ .|.+++.+.|.+.
T Consensus 166 ~~~~~~g~~g~v~~~l~~~~~-----~~~~~~v~vCGp~-~m~~~~~~~l~~~ 212 (224)
T cd06189 166 PEEGWQGRTGLVHEAVLEDFP-----DLSDFDVYACGSP-EMVYAARDDFVEK 212 (224)
T ss_pred CCcCCccccccHHHHHHhhcc-----CccccEEEEECCH-HHHHHHHHHHHHc
Confidence 643 46788876654311 0136889999999 8999999877653
No 24
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.95 E-value=4.3e-27 Score=231.81 Aligned_cols=179 Identities=21% Similarity=0.352 Sum_probs=141.8
Q ss_pred cceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCccc
Q 013425 220 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGC 299 (443)
Q Consensus 220 pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piImIa~GTGI 299 (443)
.|+|||+|+|.. .+.++|+|++........+...|.+|+||.++++ |++|.+.+|.|.|.+++..+|+||||+||||
T Consensus 86 ~R~ySias~p~~-~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~l~~~~~~~vlIAgGtGI 162 (283)
T cd06188 86 SRAYSLANYPAE-EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKP--GDKVTASGPFGEFFIKDTDREMVFIGGGAGM 162 (283)
T ss_pred ccccCcCCCCCC-CCeEEEEEEEeccCCccCCCCCceehhHHhcCCC--CCEEEEECccccccccCCCCcEEEEEecccH
Confidence 499999999853 5789999976543221113457999999999999 9999999999999887556899999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEccCCC------Ccccchh
Q 013425 300 APFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYVQH 373 (443)
Q Consensus 300 APfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yVqd 373 (443)
|||++|+++....... ..+++||||+|+.+|++|.+||+++.+.++++ ++++++|++.. .++||++
T Consensus 163 tP~~s~l~~~~~~~~~--~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~~~~G~v~~ 234 (283)
T cd06188 163 APLRSHIFHLLKTLKS--KRKISFWYGARSLKELFYQEEFEALEKEFPNF------KYHPVLSEPQPEDNWDGYTGFIHQ 234 (283)
T ss_pred hHHHHHHHHHHhcCCC--CceEEEEEecCCHHHhhHHHHHHHHHHHCCCe------EEEEEECCCCccCCCCCcceeecH
Confidence 9999999987664321 16899999999999999999999999876788 88888887541 3678888
Q ss_pred hHHHcHHHHHHhh-cCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 374 KMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 374 ~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
.+.+.. +.... ..+..+|+|||+ .|.+++.+.|.+.
T Consensus 235 ~~~~~~--~~~~~~~~~~~vyiCGP~-~m~~~~~~~l~~~ 271 (283)
T cd06188 235 VLLENY--LKKHPAPEDIEFYLCGPP-PMNSAVIKMLDDL 271 (283)
T ss_pred HHHHHH--hccCCCCCCeEEEEECCH-HHHHHHHHHHHHc
Confidence 775442 11111 136789999998 9999999888664
No 25
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.94 E-value=5.3e-27 Score=225.26 Aligned_cols=182 Identities=20% Similarity=0.315 Sum_probs=149.1
Q ss_pred CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEeecCCCC
Q 013425 205 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLP 282 (443)
Q Consensus 205 ~~p~~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~ 282 (443)
..|||++...++.. ..|+|||+|.+.. .+.++|+|++ .+.|.+|+||. .+++ |++|.+.+|.|.|.
T Consensus 36 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~ 103 (238)
T cd06211 36 FQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRL---------VPGGIATTYVHKQLKE--GDELEISGPYGDFF 103 (238)
T ss_pred cCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEE---------CCCCcchhhHhhcCCC--CCEEEEECCccceE
Confidence 35889887777765 6899999999853 4789999954 35799999997 7999 99999999999998
Q ss_pred CC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEE
Q 013425 283 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 361 (443)
Q Consensus 283 lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 361 (443)
++ ...+|+||||+|||||||++++++...+... .++.|+||+|+.+|++|.+||+++.+.+.++ +++.++
T Consensus 104 ~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~ 174 (238)
T cd06211 104 VRDSDQRPIIFIAGGSGLSSPRSMILDLLERGDT---RKITLFFGARTRAELYYLDEFEALEKDHPNF------KYVPAL 174 (238)
T ss_pred ecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCCC---CcEEEEEecCChhhhccHHHHHHHHHhCCCe------EEEEEE
Confidence 87 5558999999999999999999998876544 6899999999999999999999998876778 888899
Q ss_pred ccCCC------CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 362 SRKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 362 Sr~~~------~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
||+.+ .++|+++.+.+.... -.++..+|+|||+ .|.+++.+.|.+.
T Consensus 175 s~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyvCGp~-~m~~~~~~~L~~~ 226 (238)
T cd06211 175 SREPPESNWKGFTGFVHDAAKKHFKN----DFRGHKAYLCGPP-PMIDACIKTLMQG 226 (238)
T ss_pred CCCCCCcCcccccCcHHHHHHHhccc----ccccCEEEEECCH-HHHHHHHHHHHHc
Confidence 98642 357888766543110 1136799999999 9999999888654
No 26
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.94 E-value=5.6e-27 Score=223.50 Aligned_cols=177 Identities=23% Similarity=0.352 Sum_probs=147.8
Q ss_pred CCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccC-CCCCCCcEEEEEeecCCCCC
Q 013425 206 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPR 283 (443)
Q Consensus 206 ~p~~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~l 283 (443)
.|||++...++.. ..|+|||+|.|.. +.++|+|+. ...|.+|+||.+ +++ |+.|.+.+|.|.|.+
T Consensus 32 ~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~---------~~~G~~s~~l~~~l~~--G~~v~v~gP~G~~~~ 98 (228)
T cd06209 32 LPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRL---------LPGGAMSSYLRDRAQP--GDRLTLTGPLGSFYL 98 (228)
T ss_pred CCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEE---------cCCCcchhhHHhccCC--CCEEEEECCccccee
Confidence 5788887777654 4799999998864 789999953 367999999997 999 999999999999887
Q ss_pred CCCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEcc
Q 013425 284 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 363 (443)
Q Consensus 284 p~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 363 (443)
+...+|++|||+||||||+++++++....... ++++|+||+|+.+|++|.++|+++.+.++++ +++.++|+
T Consensus 99 ~~~~~~~vlia~GtGIaP~~~ll~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s~ 169 (228)
T cd06209 99 REVKRPLLMLAGGTGLAPFLSMLDVLAEDGSA---HPVHLVYGVTRDADLVELDRLEALAERLPGF------SFRTVVAD 169 (228)
T ss_pred cCCCCeEEEEEcccCHhHHHHHHHHHHhcCCC---CcEEEEEecCCHHHhccHHHHHHHHHhCCCe------EEEEEEcC
Confidence 74458999999999999999999998876543 6899999999999999999999999876788 88999998
Q ss_pred CCC---CcccchhhHHHcHHHHHHhhc-CCCEEEEeCCCCchHHHHHHHHHH
Q 013425 364 KQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEE 411 (443)
Q Consensus 364 ~~~---~k~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~V~~~L~~ 411 (443)
+.. .++||++.+.+. .+. .+..+|+|||+ .|++++++.|.+
T Consensus 170 ~~~~~~~~g~v~~~~~~~------~~~~~~~~v~icGp~-~m~~~~~~~l~~ 214 (228)
T cd06209 170 PDSWHPRKGYVTDHLEAE------DLNDGDVDVYLCGPP-PMVDAVRSWLDE 214 (228)
T ss_pred CCccCCCcCCccHHHHHh------hccCCCcEEEEeCCH-HHHHHHHHHHHH
Confidence 654 466888876543 122 36789999998 999999988765
No 27
>PRK08051 fre FMN reductase; Validated
Probab=99.94 E-value=5.4e-27 Score=224.58 Aligned_cols=181 Identities=20% Similarity=0.262 Sum_probs=146.1
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccc-cCCCCCCCcEEEEEeecCCCCC
Q 013425 205 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQGIYIPAWFQKGSLPR 283 (443)
Q Consensus 205 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~~~G~~v~i~~~~g~F~l 283 (443)
..|||++...++....|+|||+|.|.. .+.++|+|+.+ ..|..|.++ .++++ |++|.+.+|.|.|.+
T Consensus 30 ~~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~---------~~~~~~~~~~~~l~~--G~~v~v~gP~G~~~~ 97 (232)
T PRK08051 30 FRAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGAS---------ELNLYAMAVMERILK--DGEIEVDIPHGDAWL 97 (232)
T ss_pred cCCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEc---------CCCcchHHHHHHcCC--CCEEEEEcCCCceEc
Confidence 368999887777777899999999853 47899998542 335445454 68999 999999999999887
Q ss_pred C-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEc
Q 013425 284 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 362 (443)
Q Consensus 284 p-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 362 (443)
+ +...|+||||+||||||+++++++....... .+++|+||+|+.+|.+|.+||+++.+.++++ +++.++|
T Consensus 98 ~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~~---~~v~l~~g~r~~~~~~~~~el~~l~~~~~~~------~~~~~~~ 168 (232)
T PRK08051 98 REESERPLLLIAGGTGFSYARSILLTALAQGPN---RPITLYWGGREEDHLYDLDELEALALKHPNL------HFVPVVE 168 (232)
T ss_pred cCCCCCcEEEEecCcCcchHHHHHHHHHHhCCC---CcEEEEEEeccHHHhhhhHHHHHHHHHCCCc------EEEEEeC
Confidence 6 5668999999999999999999999876544 7899999999999999999999999886788 8998898
Q ss_pred cCCC----CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHH-HHH
Q 013425 363 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF-EEI 412 (443)
Q Consensus 363 r~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L-~~i 412 (443)
++++ .++||++.+.+.... ..+..+|+|||+ .|+++|.+.| .+.
T Consensus 169 ~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyicGp~-~m~~~v~~~l~~~~ 217 (232)
T PRK08051 169 QPEEGWQGKTGTVLTAVMQDFGS-----LAEYDIYIAGRF-EMAKIARELFCRER 217 (232)
T ss_pred CCCCCcccceeeehHHHHhhccC-----cccCEEEEECCH-HHHHHHHHHHHHHc
Confidence 8654 467887766533110 135789999999 9999999777 553
No 28
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.94 E-value=4.4e-27 Score=224.65 Aligned_cols=184 Identities=18% Similarity=0.191 Sum_probs=147.7
Q ss_pred CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccC-CCCCCCcEEEEEeecCCCC
Q 013425 205 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP 282 (443)
Q Consensus 205 ~~p~~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~ 282 (443)
..|||++...+|.. .+|+|||+|.|.. .+.++|+|+. ...|.+|.||.+ +++ |+.|.+.+|.|.|.
T Consensus 24 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~---------~~~G~~s~~l~~~~~~--g~~v~v~gP~G~~~ 91 (232)
T cd06190 24 FLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKR---------KPGGAASNALFDNLEP--GDELELDGPYGLAY 91 (232)
T ss_pred cCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEE---------cCCCcchHHHhhcCCC--CCEEEEECCcccce
Confidence 35899988888876 7899999999854 5789999953 356999999985 799 99999999999988
Q ss_pred CC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEE
Q 013425 283 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 361 (443)
Q Consensus 283 lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 361 (443)
++ +..+++||||+|||||||++++++....... ...+++|+||+|+.+|++|++||+++.+.+.++ +++.++
T Consensus 92 ~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~ 164 (232)
T cd06190 92 LRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYL-SDRPVDLFYGGRTPSDLCALDELSALVALGARL------RVTPAV 164 (232)
T ss_pred ecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccC-CCCeEEEEEeecCHHHHhhHHHHHHHHHhCCCE------EEEEEe
Confidence 76 5568999999999999999999998875210 127899999999999999999999999875567 888888
Q ss_pred ccCCC--------CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 362 SRKQP--------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 362 Sr~~~--------~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
|+++. .++|+++.+.+.... ...+..+|+|||+ .|.+++.+.|.+.
T Consensus 165 s~~~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGp~-~m~~~v~~~l~~~ 218 (232)
T cd06190 165 SDAGSGSAAGWDGPTGFVHEVVEATLGD----RLAEFEFYFAGPP-PMVDAVQRMLMIE 218 (232)
T ss_pred CCCCCCcCCCccCCcCcHHHHHHhhccC----CccccEEEEECCH-HHHHHHHHHHHHh
Confidence 87643 246777766543211 1236899999998 8998888777654
No 29
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.94 E-value=5.1e-27 Score=225.71 Aligned_cols=186 Identities=21% Similarity=0.278 Sum_probs=149.4
Q ss_pred CCCHHHHHHhcCCC----CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEE-eecC
Q 013425 205 QMPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKG 279 (443)
Q Consensus 205 ~~p~~~ll~~lp~~----~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~-~~~g 279 (443)
..|||++...++.. ..|+|||+|.+.. +.++|+|++ ...|.+|+||+++++ |+.|.+. +|.|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gP~G 91 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIIL---------VPDGPLTPRLFKLKP--GDTIYVGKKPTG 91 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEE---------ecCCCCchHHhcCCC--CCEEEECcCCCC
Confidence 35888877666542 5699999999854 789999854 356999999999999 9999999 9999
Q ss_pred CCCCC-C-CCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhc-CCCccccCCCe
Q 013425 280 SLPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN-DGVFSEAKGGG 356 (443)
Q Consensus 280 ~F~lp-~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~-~g~l~~~~~~~ 356 (443)
.|.++ . ...+++|||+|||||||++++++....... +++.|+||+|+++|++|++||+++.+. ++++ +
T Consensus 92 ~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~------~ 162 (241)
T cd06195 92 FLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWERF---DKIVLVHGVRYAEELAYQDEIEALAKQYNGKF------R 162 (241)
T ss_pred ceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCCC---CcEEEEEccCCHHHhhhHHHHHHHHhhcCCCE------E
Confidence 99987 4 468999999999999999999998765443 789999999999999999999999876 4678 8
Q ss_pred EEEEEccCCCC---cccchhhHHH-cHHHHHHh-h-cCCCEEEEeCCCCchHHHHHHHHHHHH
Q 013425 357 FYVAFSRKQPQ---KVYVQHKMLE-QSQRIWNL-L-LSKASIYVAGSATKMPSDVWSTFEEIV 413 (443)
Q Consensus 357 ~~~a~Sr~~~~---k~yVqd~l~~-~~~~l~~~-l-~~~~~iyvCG~~~~M~~~V~~~L~~i~ 413 (443)
++.++|+++.. ++|+++.+.. ........ . .++..||+|||+ .|.+++.+.|.+..
T Consensus 163 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~-~m~~~~~~~l~~~G 224 (241)
T cd06195 163 YVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNP-QMIDDTQELLKEKG 224 (241)
T ss_pred EEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCH-HHHHHHHHHHHHcC
Confidence 88899987653 6788887653 21221111 1 236899999999 99999998887653
No 30
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.94 E-value=6.4e-27 Score=236.31 Aligned_cols=179 Identities=20% Similarity=0.306 Sum_probs=149.4
Q ss_pred CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEeecCCCCCC
Q 013425 206 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPRP 284 (443)
Q Consensus 206 ~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~lp 284 (443)
.||||+...+|....|+|||+|+|.. .+.++|+|+. .+.|.+|+||. .+++ |+.|.+.+|.|.|.++
T Consensus 133 ~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~---------~~~G~~s~~l~~~l~~--G~~v~v~gP~G~~~~~ 200 (339)
T PRK07609 133 LAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRH---------MPGGVFTDHVFGALKE--RDILRIEGPLGTFFLR 200 (339)
T ss_pred CCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEe---------cCCCccHHHHHHhccC--CCEEEEEcCceeEEec
Confidence 58999887777777899999999854 4789999954 46799999996 6999 9999999999999988
Q ss_pred -CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEcc
Q 013425 285 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 363 (443)
Q Consensus 285 -~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 363 (443)
....|+||||+|||||||+|++++....... .+++||||+|+++|+++.++|++|.+.++++ +++.++||
T Consensus 201 ~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~---~~i~l~~g~r~~~dl~~~e~l~~~~~~~~~~------~~~~~~s~ 271 (339)
T PRK07609 201 EDSDKPIVLLASGTGFAPIKSIVEHLRAKGIQ---RPVTLYWGARRPEDLYLSALAEQWAEELPNF------RYVPVVSD 271 (339)
T ss_pred CCCCCCEEEEecCcChhHHHHHHHHHHhcCCC---CcEEEEEecCChHHhccHHHHHHHHHhCCCe------EEEEEecC
Confidence 5778999999999999999999999876544 6899999999999999999999998776788 89999998
Q ss_pred CCC------CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHH
Q 013425 364 KQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 411 (443)
Q Consensus 364 ~~~------~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~ 411 (443)
+.+ .++||++.+.+.... ..+..+|+|||+ .|.+++.+.|.+
T Consensus 272 ~~~~~~~~g~~G~v~~~~~~~~~~-----~~~~~vy~CGp~-~m~~~~~~~l~~ 319 (339)
T PRK07609 272 ALDDDAWTGRTGFVHQAVLEDFPD-----LSGHQVYACGSP-VMVYAARDDFVA 319 (339)
T ss_pred CCCCCCccCccCcHHHHHHhhccc-----ccCCEEEEECCH-HHHHHHHHHHHH
Confidence 422 467888776543111 136889999998 999999877765
No 31
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.94 E-value=1.1e-26 Score=234.82 Aligned_cols=179 Identities=21% Similarity=0.323 Sum_probs=149.0
Q ss_pred CCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEeecCCCCC
Q 013425 206 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 283 (443)
Q Consensus 206 ~p~~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~l 283 (443)
.|||++...+|.. ..|+|||+|+|.. .+.++|+|+. ...|.+|+||. .+++ |+.|.+.+|.|.|.+
T Consensus 138 ~pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~---------~~~G~~s~~L~~~l~~--G~~v~i~gP~G~f~l 205 (340)
T PRK11872 138 LPGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRL---------LPDGVMSNYLRERCQV--GDEILFEAPLGAFYL 205 (340)
T ss_pred CCCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEE---------CCCCcchhhHhhCCCC--CCEEEEEcCcceeEe
Confidence 6899887777754 3799999999853 5889999954 36799999996 6999 999999999999988
Q ss_pred CCCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEcc
Q 013425 284 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 363 (443)
Q Consensus 284 p~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 363 (443)
+...+|+||||+|||||||++++++....... ++++||||+|+++|++|.+||++|.+.++++ +++.++|+
T Consensus 206 ~~~~~~~vliagGtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~dl~~~~el~~~~~~~~~~------~~~~~~s~ 276 (340)
T PRK11872 206 REVERPLVFVAGGTGLSAFLGMLDELAEQGCS---PPVHLYYGVRHAADLCELQRLAAYAERLPNF------RYHPVVSK 276 (340)
T ss_pred CCCCCcEEEEeCCcCccHHHHHHHHHHHcCCC---CcEEEEEecCChHHhccHHHHHHHHHHCCCc------EEEEEEeC
Confidence 75568999999999999999999998875544 6899999999999999999999999877888 88888887
Q ss_pred CCC----CcccchhhHHHcHHHHHHhhc-CCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 364 KQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 364 ~~~----~k~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
+++ .++||++.+.+. .+. .+..+|+|||+ .|++++.+.|.+.
T Consensus 277 ~~~~~~g~~g~v~~~l~~~------~l~~~~~~vy~CGp~-~mv~~~~~~L~~~ 323 (340)
T PRK11872 277 ASADWQGKRGYIHEHFDKA------QLRDQAFDMYLCGPP-PMVEAVKQWLDEQ 323 (340)
T ss_pred CCCcCCCceeeccHHHHHh------hcCcCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence 543 468888876543 122 25689999999 9999999887654
No 32
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.94 E-value=1.4e-26 Score=239.42 Aligned_cols=181 Identities=20% Similarity=0.331 Sum_probs=146.8
Q ss_pred CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCc
Q 013425 218 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT 297 (443)
Q Consensus 218 ~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piImIa~GT 297 (443)
...|+|||+|.|.. .+.++|+|+++.+....++.+.|.+|+||+++++ ||.|.+.+|.|.|.+++..+|+||||+||
T Consensus 208 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~f~~~~~~~~ivlIAgGt 284 (409)
T PRK05464 208 PVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGA 284 (409)
T ss_pred ceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCC--CCEEEEEccccCcEecCCCceEEEEEecc
Confidence 35799999999854 4689999988766655556778999999999999 99999999999998776668999999999
Q ss_pred cchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEccCCC------Ccccc
Q 013425 298 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYV 371 (443)
Q Consensus 298 GIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yV 371 (443)
|||||+|++++....... ..+++||||+|+++|++|.+||+++.+.++++ ++++++|+++. .+++|
T Consensus 285 GIaP~~sml~~~l~~~~~--~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~g~~G~v 356 (409)
T PRK05464 285 GMAPMRSHIFDQLKRLKS--KRKISFWYGARSLREMFYVEDFDQLAAENPNF------KWHVALSDPLPEDNWTGYTGFI 356 (409)
T ss_pred ChhHHHHHHHHHHhCCCC--CceEEEEEecCCHHHhhHHHHHHHHHHhCCCe------EEEEEEcCCCCCCCCCCcccee
Confidence 999999999987664321 16899999999999999999999998877888 88999987532 35788
Q ss_pred hhhHHHcHHHHHHhh-cCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 372 QHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 372 qd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
++.+.+.. +.+.. ..+..+|+|||+ .|.+++.+.|.+.
T Consensus 357 ~~~l~~~~--l~~~~~~~~~~vyiCGP~-~m~~av~~~L~~~ 395 (409)
T PRK05464 357 HNVLYENY--LKDHEAPEDCEYYMCGPP-MMNAAVIKMLKDL 395 (409)
T ss_pred CHHHHHhh--hhhcCCCCCeEEEEECCH-HHHHHHHHHHHHc
Confidence 88775431 11111 136799999998 9999999777653
No 33
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.94 E-value=1.2e-26 Score=239.16 Aligned_cols=182 Identities=19% Similarity=0.235 Sum_probs=143.9
Q ss_pred CCHHHHHHhcC--C--C-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccC-CCCCCCcEEEEEeecC
Q 013425 206 MPIDWLVQLVP--P--L-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG 279 (443)
Q Consensus 206 ~p~~~ll~~lp--~--~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g 279 (443)
.|||++...++ . . .+|+|||+|+|. .+.++|+|+. ...|.+|+||++ +++ |+.|.+.+|.|
T Consensus 186 ~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~G 252 (399)
T PRK13289 186 KPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKR---------EAGGKVSNYLHDHVNV--GDVLELAAPAG 252 (399)
T ss_pred CCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEE---------CCCCeehHHHhhcCCC--CCEEEEEcCcc
Confidence 58898877664 1 1 359999999985 3689999843 456999999985 999 99999999999
Q ss_pred CCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEE
Q 013425 280 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY 358 (443)
Q Consensus 280 ~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~ 358 (443)
.|.++ ...+|+||||+|||||||+|++++....... .+++||||+|+.+|++|++||+++.+.++++ +++
T Consensus 253 ~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~eL~~l~~~~~~~------~~~ 323 (399)
T PRK13289 253 DFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQPK---RPVHFIHAARNGGVHAFRDEVEALAARHPNL------KAH 323 (399)
T ss_pred ccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCCC---CCEEEEEEeCChhhchHHHHHHHHHHhCCCc------EEE
Confidence 99998 5678999999999999999999998766544 7999999999999999999999999876788 899
Q ss_pred EEEccCCCC----cccch-hhHHHcHHHHHHhhc-CCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 359 VAFSRKQPQ----KVYVQ-HKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 359 ~a~Sr~~~~----k~yVq-d~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
.++|++... ..|++ ..+. .+.+.+.+. .+..+|||||+ .|.+++.+.|.+.
T Consensus 324 ~~~s~~~~~~~~~~~~~~~g~i~--~~~l~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~~ 380 (399)
T PRK13289 324 TWYREPTEQDRAGEDFDSEGLMD--LEWLEAWLPDPDADFYFCGPV-PFMQFVAKQLLEL 380 (399)
T ss_pred EEECCCccccccCCcccccCccc--HHHHHhhCCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 999985431 11221 1221 122333343 37899999998 9999999877653
No 34
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.94 E-value=1.8e-26 Score=238.36 Aligned_cols=181 Identities=21% Similarity=0.349 Sum_probs=144.5
Q ss_pred CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCc
Q 013425 218 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT 297 (443)
Q Consensus 218 ~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piImIa~GT 297 (443)
...|+|||+|+|.. .+.++|+|+++.+....++.+.|.+|+||.++++ ||.|.+.+|.|.|.+++..+|+||||+||
T Consensus 204 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~l~~~~~~lvlIAgGt 280 (405)
T TIGR01941 204 ETVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGA 280 (405)
T ss_pred ccceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCC--cCEEEEEeccCCCeecCCCCCEEEEecCc
Confidence 35699999999854 5789999988754443334678999999999999 99999999999998875568999999999
Q ss_pred cchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEccCCC------Ccccc
Q 013425 298 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYV 371 (443)
Q Consensus 298 GIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yV 371 (443)
|||||++|+++....... ..+++||||+|+++|++|.+||+++.+.++++ ++++++|++++ .+++|
T Consensus 281 GIaP~lsmi~~~l~~~~~--~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~g~~G~v 352 (405)
T TIGR01941 281 GMAPMRSHIFDQLKRLKS--KRKISFWYGARSLREMFYQEDFDQLEAENPNF------VWHVALSDPQPEDNWTGYTGFI 352 (405)
T ss_pred CcchHHHHHHHHHhcCCC--CCeEEEEEecCCHHHHhHHHHHHHHHHhCCCe------EEEEEeCCCCccCCCCCcccee
Confidence 999999999987654221 16899999999999999999999998877888 88999987532 35788
Q ss_pred hhhHHHcHHHHHHhh-cCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 372 QHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 372 qd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
++.+.+.. +.+.. ..++.+|+|||+ .|.+++.+.|.+.
T Consensus 353 ~~~l~~~~--l~~~~~~~~~~vylCGP~-~m~~av~~~L~~~ 391 (405)
T TIGR01941 353 HNVLYENY--LKDHDAPEDCEFYMCGPP-MMNAAVIKMLEDL 391 (405)
T ss_pred CHHHHHhh--hcccCCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence 87765321 11111 236789999998 9999999777653
No 35
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.94 E-value=2.2e-26 Score=218.40 Aligned_cols=180 Identities=21% Similarity=0.258 Sum_probs=147.7
Q ss_pred CCHHHHHHhcCCC--CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccC-CCCCCCcEEEEEeecCCCC
Q 013425 206 MPIDWLVQLVPPL--KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP 282 (443)
Q Consensus 206 ~p~~~ll~~lp~~--~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~ 282 (443)
.|||++...+|.. ..|+|||+|.|.. .+.++|+|+. ...|.+|+||.+ +++ |+.|.+.+|.|.|.
T Consensus 25 ~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~ 92 (224)
T cd06187 25 WAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRA---------VPGGRVSNALHDELKV--GDRVRLSGPYGTFY 92 (224)
T ss_pred CCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEe---------CCCCcchHHHhhcCcc--CCEEEEeCCccceE
Confidence 4788877777654 3799999999864 4789999953 346999999987 999 99999999999998
Q ss_pred CC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEE
Q 013425 283 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 361 (443)
Q Consensus 283 lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 361 (443)
++ ....++||||+|||||||++++++....... .+++|+|++|+.+|++|.++|+++.+.++++ ++..++
T Consensus 93 ~~~~~~~~~lliagG~GI~p~~sll~~~~~~~~~---~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~ 163 (224)
T cd06187 93 LRRDHDRPVLCIAGGTGLAPLRAIVEDALRRGEP---RPVHLFFGARTERDLYDLEGLLALAARHPWL------RVVPVV 163 (224)
T ss_pred ecCCCCCCEEEEecCcCHHHHHHHHHHHHhcCCC---CCEEEEEecCChhhhcChHHHHHHHHhCCCe------EEEEEe
Confidence 87 5478999999999999999999998876543 7899999999999999999999998776777 788888
Q ss_pred ccCCC----CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 362 SRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 362 Sr~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
+++++ .++|+++.+.+... -.+++.+|+||++ .|.+++++.|++.
T Consensus 164 ~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~v~vcGp~-~~~~~v~~~l~~~ 212 (224)
T cd06187 164 SHEEGAWTGRRGLVTDVVGRDGP-----DWADHDIYICGPP-AMVDATVDALLAR 212 (224)
T ss_pred CCCCCccCCCcccHHHHHHHhcc-----ccccCEEEEECCH-HHHHHHHHHHHHc
Confidence 87543 46788887754321 0136899999998 9999999887653
No 36
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.94 E-value=2.4e-26 Score=220.18 Aligned_cols=181 Identities=17% Similarity=0.225 Sum_probs=147.4
Q ss_pred CCHHHHHHhcCC-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccC-CCCCCCcEEEEEeecCCCCC
Q 013425 206 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPR 283 (443)
Q Consensus 206 ~p~~~ll~~lp~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~l 283 (443)
.|||++...+|. ...|+|||+|.|.. .+.++|+|+. ...|.+|+||.+ +++ |+.|.+.+|.|.|.+
T Consensus 36 ~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~f~l 103 (236)
T cd06210 36 VPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRL---------LPGGAFSTYLETRAKV--GQRLNLRGPLGAFGL 103 (236)
T ss_pred CCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEE---------cCCCccchhhhhCcCC--CCEEEEecCcceeee
Confidence 588988776664 35899999999864 4789999954 356999999986 999 999999999999988
Q ss_pred C-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEc
Q 013425 284 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 362 (443)
Q Consensus 284 p-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 362 (443)
+ ...+++||||+|||||||+++++++...... .+++||||+|+.+|.+|.++|+++.+.++++ ++++++|
T Consensus 104 ~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s 174 (236)
T cd06210 104 RENGLRPRWFVAGGTGLAPLLSMLRRMAEWGEP---QEARLFFGVNTEAELFYLDELKRLADSLPNL------TVRICVW 174 (236)
T ss_pred cCCCCccEEEEccCcchhHHHHHHHHHHhcCCC---ceEEEEEecCCHHHhhhHHHHHHHHHhCCCe------EEEEEEc
Confidence 7 4567999999999999999999998775444 6899999999999999999999999877888 8999999
Q ss_pred cCCC----CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 363 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 363 r~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
|+.+ .++++++.+.+.... ......+|+|||+ .|++++++.|.+.
T Consensus 175 ~~~~~~~~~~g~~~~~l~~~l~~----~~~~~~vyicGp~-~m~~~~~~~l~~~ 223 (236)
T cd06210 175 RPGGEWEGYRGTVVDALREDLAS----SDAKPDIYLCGPP-GMVDAAFAAAREA 223 (236)
T ss_pred CCCCCcCCccCcHHHHHHHhhcc----cCCCcEEEEeCCH-HHHHHHHHHHHHc
Confidence 7543 356777665543111 1235789999998 9999999877653
No 37
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.94 E-value=2.2e-26 Score=219.96 Aligned_cols=180 Identities=24% Similarity=0.388 Sum_probs=146.9
Q ss_pred CCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccC-CCCCCCcEEEEEeecCCCCC
Q 013425 206 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPR 283 (443)
Q Consensus 206 ~p~~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~l 283 (443)
.|||++...+|.. ..|+|||+|.|.. .+.++|+|+. ...|.+|+||.+ +++ |++|.+.+|.|.|.+
T Consensus 31 ~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~ 98 (232)
T cd06212 31 FAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKK---------YPGGLFSSFLDDGLAV--GDPVTVTGPYGTCTL 98 (232)
T ss_pred CCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEE---------CCCCchhhHHhhcCCC--CCEEEEEcCccccee
Confidence 5889887777654 6899999999864 4789999954 357999999985 999 999999999999988
Q ss_pred C-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEc
Q 013425 284 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 362 (443)
Q Consensus 284 p-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 362 (443)
+ ....++||||+|||||||++++++....... +++.|+||+|+.+|++|.+||+++.+.+.++ +++.++|
T Consensus 99 ~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s 169 (232)
T cd06212 99 RESRDRPIVLIGGGSGMAPLLSLLRDMAASGSD---RPVRFFYGARTARDLFYLEEIAALGEKIPDF------TFIPALS 169 (232)
T ss_pred cCCCCCcEEEEecCcchhHHHHHHHHHHhcCCC---CcEEEEEeccchHHhccHHHHHHHHHhCCCE------EEEEEEC
Confidence 7 5578999999999999999999998876544 6899999999999999999999998876778 7888899
Q ss_pred cCCC------CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 363 RKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 363 r~~~------~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
++.. ..+++++.+.+.... + ++..+|+|||+ .|.+++.+.|.+.
T Consensus 170 ~~~~~~~~~~~~g~~~~~~~~~~~~----~-~~~~v~~CGp~-~~~~~v~~~l~~~ 219 (232)
T cd06212 170 ESPDDEGWSGETGLVTEVVQRNEAT----L-AGCDVYLCGPP-PMIDAALPVLEMS 219 (232)
T ss_pred CCCCCCCCcCCcccHHHHHHhhccC----c-cCCEEEEECCH-HHHHHHHHHHHHc
Confidence 8643 256777655432111 1 36889999999 9999998777653
No 38
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.94 E-value=2.4e-26 Score=231.55 Aligned_cols=183 Identities=15% Similarity=0.234 Sum_probs=145.6
Q ss_pred CCCHHHHHHhcCC--CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEeecCCC
Q 013425 205 QMPIDWLVQLVPP--LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 281 (443)
Q Consensus 205 ~~p~~~ll~~lp~--~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 281 (443)
..||||+...++. ...|+|||+|.|.. .+.++|+|+. ...|.+|+||. ++++ |++|.+.+|.|.|
T Consensus 37 f~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~G~f 104 (332)
T PRK10684 37 YRAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRR---------IDDGVGSQWLTRDVKR--GDYLWLSDAMGEF 104 (332)
T ss_pred cCCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEE---------cCCCcchhHHHhcCCC--CCEEEEeCCcccc
Confidence 3589998777664 24699999999853 4789999953 46799999996 7999 9999999999999
Q ss_pred CCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEE
Q 013425 282 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 360 (443)
Q Consensus 282 ~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 360 (443)
.++ ....|+||||+|||||||+||+++....... .+++|+||+|+.+|++|.+||+++.+.++++ ++++.
T Consensus 105 ~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~~---~~v~l~y~~r~~~~~~~~~el~~l~~~~~~~------~~~~~ 175 (332)
T PRK10684 105 TCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQ---ADVQVIFNVRTPQDVIFADEWRQLKQRYPQL------NLTLV 175 (332)
T ss_pred ccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCC---CCEEEEEeCCChHHhhhHHHHHHHHHHCCCe------EEEEE
Confidence 987 5668999999999999999999998765444 7899999999999999999999999877777 77777
Q ss_pred EccCCCCcccchhhHHHcHHHHHHhhc--CCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 361 FSRKQPQKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 361 ~Sr~~~~k~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
.+++.. ++|.++.+.+. .+.+.+. .+..+|+|||+ .|.+++.+.|.+.
T Consensus 176 ~~~~~~-~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP~-~m~~~v~~~l~~~ 225 (332)
T PRK10684 176 AENNAT-EGFIAGRLTRE--LLQQAVPDLASRTVMTCGPA-PYMDWVEQEVKAL 225 (332)
T ss_pred eccCCC-CCccccccCHH--HHHHhcccccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 776432 45555554321 1222222 26789999999 9999999887664
No 39
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.94 E-value=2.5e-26 Score=219.47 Aligned_cols=177 Identities=17% Similarity=0.310 Sum_probs=142.1
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEeecCCC
Q 013425 206 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 281 (443)
Q Consensus 206 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 281 (443)
.|||++...++. ..+|+|||+|.+. .+.++|+|+. ...|.+|+||. .+++ |+.|.+.+|.|.|
T Consensus 29 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~f 95 (231)
T cd06191 29 RPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKR---------VPGGRVSNYLREHIQP--GMTVEVMGPQGHF 95 (231)
T ss_pred CCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEE---------CCCCccchHHHhcCCC--CCEEEEeCCccce
Confidence 589988666642 3579999999985 5889999954 35699999998 6999 9999999999999
Q ss_pred CCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEE
Q 013425 282 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 360 (443)
Q Consensus 282 ~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 360 (443)
.++ ....++||||+||||||++|++++....... .++.||||+|+++|++|++||+++.+.++++ +++.+
T Consensus 96 ~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~ 166 (231)
T cd06191 96 VYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAPE---SDFTLIHSARTPADMIFAQELRELADKPQRL------RLLCI 166 (231)
T ss_pred EeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCCC---CCEEEEEecCCHHHHhHHHHHHHHHHhCCCe------EEEEE
Confidence 887 5668999999999999999999998765444 7899999999999999999999998766788 89999
Q ss_pred EccCCCC------cccchhhHHHcHHHHHHhhc--CCCEEEEeCCCCchHHHHHHHHHH
Q 013425 361 FSRKQPQ------KVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEE 411 (443)
Q Consensus 361 ~Sr~~~~------k~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~M~~~V~~~L~~ 411 (443)
+||++.. ++++++.+.+ .++. .++.+|+||++ .|++++.+.|.+
T Consensus 167 ~s~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~vyicGp~-~mv~~~~~~l~~ 218 (231)
T cd06191 167 FTRETLDSDLLHGRIDGEQSLGA------ALIPDRLEREAFICGPA-GMMDAVETALKE 218 (231)
T ss_pred ECCCCCCccccCCcccccHHHHH------HhCccccCCeEEEECCH-HHHHHHHHHHHH
Confidence 9986542 2333322221 1222 25799999999 999999977754
No 40
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.93 E-value=5.8e-26 Score=216.42 Aligned_cols=177 Identities=20% Similarity=0.325 Sum_probs=144.3
Q ss_pred CCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEeecCCCCC
Q 013425 206 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 283 (443)
Q Consensus 206 ~p~~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~l 283 (443)
.|||++...++.. ..|+|||+|+|.. .+.++|+|+. ...|.+|+||. .+++ |+.|.+.+|.|.|.+
T Consensus 29 ~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~ 96 (227)
T cd06213 29 KAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRK---------VPGGAFSGWLFGADRT--GERLTVRGPFGDFWL 96 (227)
T ss_pred CCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEE---------CCCCcchHHHHhcCCC--CCEEEEeCCCcceEe
Confidence 4889887777654 5899999999853 5789999953 35699999995 6999 999999999999988
Q ss_pred CCCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcC-CCccccCCCeEEEEEc
Q 013425 284 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGFYVAFS 362 (443)
Q Consensus 284 p~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~~~~~~~~~~a~S 362 (443)
++..+++||||+|||||||++++++....... .+++++||+|+++|.+|.+||+++.+.+ +++ +++.++|
T Consensus 97 ~~~~~~~lliagG~GiaP~~~~~~~~~~~~~~---~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~------~~~~~~s 167 (227)
T cd06213 97 RPGDAPILCIAGGSGLAPILAILEQARAAGTK---RDVTLLFGARTQRDLYALDEIAAIAARWRGRF------RFIPVLS 167 (227)
T ss_pred CCCCCcEEEEecccchhHHHHHHHHHHhcCCC---CcEEEEEeeCCHHHhccHHHHHHHHHhccCCe------EEEEEec
Confidence 75558999999999999999999998876544 6899999999999999999999998642 567 7888888
Q ss_pred cCCC------CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHH
Q 013425 363 RKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 411 (443)
Q Consensus 363 r~~~------~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~ 411 (443)
++.+ .++++++.+.+. +..+..+|+|||+ .|.+++.+.|.+
T Consensus 168 ~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp~-~~~~~~~~~l~~ 214 (227)
T cd06213 168 EEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGPP-AMIDAAIAVLRA 214 (227)
T ss_pred CCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECCH-HHHHHHHHHHHH
Confidence 8642 245777655432 2357899999998 999999877765
No 41
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.93 E-value=4.8e-26 Score=225.09 Aligned_cols=177 Identities=19% Similarity=0.233 Sum_probs=142.1
Q ss_pred CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCC-CCCC
Q 013425 206 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPRP 284 (443)
Q Consensus 206 ~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~lp 284 (443)
.|||++...+|....|+|||+|+|.. .+.++|+|+ +.|.+|.||.++++ |++|.+.+|.|. |.++
T Consensus 39 ~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik-----------~~G~~S~~L~~l~~--Gd~v~v~gP~G~~f~~~ 104 (289)
T PRK08345 39 KPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIR-----------RAGRVTTVIHRLKE--GDIVGVRGPYGNGFPVD 104 (289)
T ss_pred CCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEE-----------eCChHHHHHHhCCC--CCEEEEeCCCCCCCCcc
Confidence 58999877777666699999999853 578999994 24899999999999 999999999997 6665
Q ss_pred -CCCCCeEEEeCCccchhHHHHHHHHHHhc-CCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEc
Q 013425 285 -PPSVPLILIGPGTGCAPFRGFVEERAIQS-SSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 362 (443)
Q Consensus 285 -~~~~piImIa~GTGIAPfrs~lq~~~~~~-~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 362 (443)
...+|+||||+|||||||++|+++..... .. .+++|+||+|+.+|++|++||+++.+.++++ +++.++|
T Consensus 105 ~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~---~~v~l~~~~r~~~d~~~~deL~~l~~~~~~~------~~~~~~s 175 (289)
T PRK08345 105 EMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKY---GNITLIYGAKYYEDLLFYDELIKDLAEAENV------KIIQSVT 175 (289)
T ss_pred cccCceEEEEecccchhHHHHHHHHHHhcCCCC---CcEEEEEecCCHHHhhHHHHHHHHHhcCCCE------EEEEEec
Confidence 34579999999999999999999887654 22 6899999999999999999999998776788 8899999
Q ss_pred cCCCC---------------cccchhhHHHcHHHHHHhh-cCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 363 RKQPQ---------------KVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 363 r~~~~---------------k~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
++++. +++|++.+.+. .. .++..+|+|||+ .|++++.+.|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP~-~m~~~v~~~L~~~ 234 (289)
T PRK08345 176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGPP-VMYKFVFKELINR 234 (289)
T ss_pred CCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECCH-HHHHHHHHHHHHc
Confidence 86432 23343333221 11 135789999999 9999999888664
No 42
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.93 E-value=1.4e-25 Score=212.78 Aligned_cols=180 Identities=21% Similarity=0.261 Sum_probs=143.6
Q ss_pred CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccC-CCCCCCcEEEEEeecCCCCCC
Q 013425 206 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPRP 284 (443)
Q Consensus 206 ~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~lp 284 (443)
.|||++...++....|+|||+|.|.. .+.++|+|+. ...|.+|.||.+ +++ |+.|.+.+|.|.|.+.
T Consensus 25 ~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~~~~~ 92 (222)
T cd06194 25 LPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRR---------KPNGAFSGWLGEEARP--GHALRLQGPFGQAFYR 92 (222)
T ss_pred CCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEe---------ccCCccchHHHhccCC--CCEEEEecCcCCeecc
Confidence 58898877777777899999999864 3789999843 356999999987 799 9999999999987664
Q ss_pred --CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEc
Q 013425 285 --PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 362 (443)
Q Consensus 285 --~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 362 (443)
....+++|||+|||||||+++++++...... ++++||||+|+.+|++|++||+++.+.++++ +++.+++
T Consensus 93 ~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~~ 163 (222)
T cd06194 93 PEYGEGPLLLVGAGTGLAPLWGIARAALRQGHQ---GEIRLVHGARDPDDLYLHPALLWLAREHPNF------RYIPCVS 163 (222)
T ss_pred CCCCCCCEEEEecCcchhhHHHHHHHHHhcCCC---ccEEEEEecCChhhccCHHHHHHHHHHCCCe------EEEEEEc
Confidence 5568999999999999999999998765544 7899999999999999999999999866788 8888888
Q ss_pred cCCCCcc--cchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 363 RKQPQKV--YVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 363 r~~~~k~--yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
+++.... ++.+ +.+. +. ...++..+|+|||+ .|.+++++.|.+.
T Consensus 164 ~~~~~~~~~~~~~-~~~~---~~-~~~~~~~vyicGp~-~m~~~~~~~L~~~ 209 (222)
T cd06194 164 EGSQGDPRVRAGR-IAAH---LP-PLTRDDVVYLCGAP-SMVNAVRRRAFLA 209 (222)
T ss_pred cCCCCCcccccch-hhhh---hc-cccCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence 8654321 1222 1111 11 12347899999998 9999999888663
No 43
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.93 E-value=2.1e-25 Score=215.15 Aligned_cols=177 Identities=20% Similarity=0.318 Sum_probs=142.4
Q ss_pred CCHHHHHHhcC--C---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccC-CCCCCCcEEEEEeecC
Q 013425 206 MPIDWLVQLVP--P---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG 279 (443)
Q Consensus 206 ~p~~~ll~~lp--~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g 279 (443)
.|+|++...++ . ...|+|||+|.|.. +.++|+|+. ...|.+|+||.+ +++ |++|.|.+|.|
T Consensus 38 ~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G 104 (247)
T cd06184 38 LPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKR---------EPGGLVSNYLHDNVKV--GDVLEVSAPAG 104 (247)
T ss_pred CCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCCC
Confidence 57888766653 2 46799999999854 588888843 356999999987 999 99999999999
Q ss_pred CCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEE
Q 013425 280 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY 358 (443)
Q Consensus 280 ~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~ 358 (443)
.|.++ ...+++||||+|||||||++++++....... .+++||||+|+++|.+|+++|+++.+.++++ +++
T Consensus 105 ~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~~---~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~ 175 (247)
T cd06184 105 DFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGPG---RPVTFIHAARNSAVHAFRDELEELAARLPNL------KLH 175 (247)
T ss_pred ceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCCC---CcEEEEEEcCchhhHHHHHHHHHHHhhCCCe------EEE
Confidence 99988 4678999999999999999999998875433 7899999999999999999999998876778 899
Q ss_pred EEEccCCCC--------cccchhhHHHcHHHHHH-hhcCCCEEEEeCCCCchHHHHHHHHHH
Q 013425 359 VAFSRKQPQ--------KVYVQHKMLEQSQRIWN-LLLSKASIYVAGSATKMPSDVWSTFEE 411 (443)
Q Consensus 359 ~a~Sr~~~~--------k~yVqd~l~~~~~~l~~-~l~~~~~iyvCG~~~~M~~~V~~~L~~ 411 (443)
+++|++... .++++.. .+.+ ...++..+|+||++ .|++++++.|.+
T Consensus 176 ~~~s~~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~v~icGp~-~m~~~v~~~l~~ 230 (247)
T cd06184 176 VFYSEPEAGDREEDYDHAGRIDLA------LLRELLLPADADFYLCGPV-PFMQAVREGLKA 230 (247)
T ss_pred EEECCCCcccccccccccCccCHH------HHhhccCCCCCEEEEECCH-HHHHHHHHHHHH
Confidence 999986432 2344321 2222 22348899999999 999999977765
No 44
>PRK05713 hypothetical protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=224.15 Aligned_cols=174 Identities=18% Similarity=0.170 Sum_probs=139.5
Q ss_pred CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecC-CCCCC
Q 013425 206 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLPRP 284 (443)
Q Consensus 206 ~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g-~F~lp 284 (443)
.||||+...++....|+|||+|.|.. .+.++|+|+. .+.|..|.||.++++ |++|.+.+|.| .|.++
T Consensus 120 ~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~---------~~~G~~s~~l~~l~~--Gd~v~l~~p~gg~~~~~ 187 (312)
T PRK05713 120 RAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDC---------SRPGAFCDAARQLQV--GDLLRLGELRGGALHYD 187 (312)
T ss_pred CCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEE---------cCCCccchhhhcCCC--CCEEEEccCCCCceEec
Confidence 58898876666667899999999854 4789999953 467999999999999 99999999886 56665
Q ss_pred -C-CCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEc
Q 013425 285 -P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 362 (443)
Q Consensus 285 -~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 362 (443)
+ ..+|+||||+|||||||+|++++....... .+++|+||+|+.+|++|.+||++|.+.++++ ++..+.+
T Consensus 188 ~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~~ 258 (312)
T PRK05713 188 PDWQERPLWLLAAGTGLAPLWGILREALRQGHQ---GPIRLLHLARDSAGHYLAEPLAALAGRHPQL------SVELVTA 258 (312)
T ss_pred CCCCCCcEEEEecCcChhHHHHHHHHHHhcCCC---CcEEEEEEcCchHHhhhHHHHHHHHHHCCCc------EEEEEEC
Confidence 3 568999999999999999999998776544 6899999999999999999999999876788 7777665
Q ss_pred cCCCCcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 363 RKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 363 r~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
+ ++++.+.+. . ....+..+|+|||+ .|.+++.+.|.+.
T Consensus 259 ~------~~~~~l~~~----~-~~~~~~~vyiCGp~-~mv~~~~~~L~~~ 296 (312)
T PRK05713 259 A------QLPAALAEL----R-LVSRQTMALLCGSP-ASVERFARRLYLA 296 (312)
T ss_pred c------chhhhhhhc----c-CCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence 4 244433221 0 01235789999999 9999999888653
No 45
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.93 E-value=2.7e-25 Score=211.97 Aligned_cols=178 Identities=22% Similarity=0.325 Sum_probs=141.2
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEeecCCC
Q 013425 206 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 281 (443)
Q Consensus 206 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 281 (443)
.|||++...++. ...|+|||+|.|.. .+.++|+|++ ...|.+|.||. .+++ |+.|.+.+|.|.|
T Consensus 29 ~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~f 96 (231)
T cd06215 29 KPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKR---------VPGGLVSNWLHDNLKV--GDELWASGPAGEF 96 (231)
T ss_pred CCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCccee
Confidence 588887666652 24799999999853 4679999854 35699999996 7999 9999999999999
Q ss_pred CCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEE
Q 013425 282 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 360 (443)
Q Consensus 282 ~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 360 (443)
.++ ....++||||+|||||||++++++....... .+++||||+|+++|++|.++|+++.+.++++ ++.++
T Consensus 97 ~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~ 167 (231)
T cd06215 97 TLIDHPADKLLLLSAGSGITPMMSMARWLLDTRPD---ADIVFIHSARSPADIIFADELEELARRHPNF------RLHLI 167 (231)
T ss_pred EeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCC---CcEEEEEecCChhhhhHHHHHHHHHHHCCCe------EEEEE
Confidence 987 4478999999999999999999998775544 6899999999999999999999999876778 88888
Q ss_pred EccCCC-----CcccchhhHHHcHHHHHHhhc--CCCEEEEeCCCCchHHHHHHHHHH
Q 013425 361 FSRKQP-----QKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEE 411 (443)
Q Consensus 361 ~Sr~~~-----~k~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~M~~~V~~~L~~ 411 (443)
+++++. ..+++...+ +.+.+. .+..+|+|||+ .|.+++.+.|.+
T Consensus 168 ~~~~~~~~~~~~~g~~~~~~------l~~~~~~~~~~~v~icGp~-~m~~~~~~~l~~ 218 (231)
T cd06215 168 LEQPAPGAWGGYRGRLNAEL------LALLVPDLKERTVFVCGPA-GFMKAVKSLLAE 218 (231)
T ss_pred EccCCCCcccccCCcCCHHH------HHHhcCCccCCeEEEECCH-HHHHHHHHHHHH
Confidence 888654 123443311 222222 25789999998 999999877754
No 46
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.92 E-value=3.1e-25 Score=209.96 Aligned_cols=176 Identities=15% Similarity=0.218 Sum_probs=136.8
Q ss_pred CCCHHHHHHhcCC----CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCC
Q 013425 205 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS 280 (443)
Q Consensus 205 ~~p~~~ll~~lp~----~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~ 280 (443)
..|||++...++. ...|+|||+|+|.. +.++|+|+++ ...|..|.||.++++ |+.|.+.+|.|.
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~--~~l~~~vk~~--------~~~g~~s~~l~~l~~--G~~v~i~gP~G~ 95 (218)
T cd06196 28 FTPGQATEVAIDKPGWRDEKRPFTFTSLPED--DVLEFVIKSY--------PDHDGVTEQLGRLQP--GDTLLIEDPWGA 95 (218)
T ss_pred CCCCCEEEEEeeCCCCCccccccccccCCCC--CeEEEEEEEc--------CCCCcHhHHHHhCCC--CCEEEEECCccc
Confidence 3688988766652 35899999999853 7899999642 123677999999999 999999999999
Q ss_pred CCCCCCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEE
Q 013425 281 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 360 (443)
Q Consensus 281 F~lp~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 360 (443)
|.++ .|+||||+|||||||+|+++++...... .+++|+||+|+.+|++|++||++|.. + ++..+
T Consensus 96 ~~~~---~~~vlia~GtGiaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~----~------~~~~~ 159 (218)
T cd06196 96 IEYK---GPGVFIAGGAGITPFIAILRDLAAKGKL---EGNTLIFANKTEKDIILKDELEKMLG----L------KFINV 159 (218)
T ss_pred eEec---CceEEEecCCCcChHHHHHHHHHhCCCC---ceEEEEEecCCHHHHhhHHHHHHhhc----c------eEEEE
Confidence 8764 5899999999999999999998875433 67999999999999999999999852 4 67778
Q ss_pred EccCCCCcccchhhHHHcHHHHHHhhcC-CCEEEEeCCCCchHHHHHHHHHHH
Q 013425 361 FSRKQPQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 361 ~Sr~~~~k~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
+||+.. ..|.+..+.+ +.+.+++.. ++.+|+|||+ .|.+++.+.|.+.
T Consensus 160 ~s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp~-~m~~~~~~~l~~~ 208 (218)
T cd06196 160 VTDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGPP-PMEEAINGALKEL 208 (218)
T ss_pred EcCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 888654 3344443321 223333333 5789999999 9999999877654
No 47
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.92 E-value=4.5e-25 Score=212.47 Aligned_cols=179 Identities=19% Similarity=0.320 Sum_probs=142.6
Q ss_pred CCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccC-CCCCCCcEEEEEeecCCC
Q 013425 206 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSL 281 (443)
Q Consensus 206 ~p~~~ll~~lp--~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F 281 (443)
.|||++...++ . ..+|+|||+|.|....+.++|+|+. ...|.+|.||.+ +++ |++|.+.+|.|.|
T Consensus 47 ~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~f 115 (243)
T cd06216 47 RAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKA---------QPDGLVSNWLVNHLAP--GDVVELSQPQGDF 115 (243)
T ss_pred CCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEE---------cCCCcchhHHHhcCCC--CCEEEEECCceee
Confidence 58888776664 2 3579999999985125889999954 356999999985 899 9999999999999
Q ss_pred CCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEE
Q 013425 282 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 360 (443)
Q Consensus 282 ~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 360 (443)
.++ +..+++||||+||||||++|++++....... .+++||||+|+.+|.+|.+||+++.+.++++ ++++.
T Consensus 116 ~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~~~---~~i~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~ 186 (243)
T cd06216 116 VLPDPLPPRLLLIAAGSGITPVMSMLRTLLARGPT---ADVVLLYYARTREDVIFADELRALAAQHPNL------RLHLL 186 (243)
T ss_pred ecCCCCCCCEEEEecCccHhHHHHHHHHHHhcCCC---CCEEEEEEcCChhhhHHHHHHHHHHHhCCCe------EEEEE
Confidence 998 4478999999999999999999998776433 7899999999999999999999998665778 88888
Q ss_pred EccCCCCcccchhhHHHcHHHHHHhhc--CCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 361 FSRKQPQKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 361 ~Sr~~~~k~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
+|++ ...+++.... +.+... +++.+|+||++ .|.+++.+.|++.
T Consensus 187 ~s~~-~~~g~~~~~~------l~~~~~~~~~~~vyvcGp~-~m~~~~~~~l~~~ 232 (243)
T cd06216 187 YTRE-ELDGRLSAAH------LDAVVPDLADRQVYACGPP-GFLDAAEELLEAA 232 (243)
T ss_pred EcCC-ccCCCCCHHH------HHHhccCcccCeEEEECCH-HHHHHHHHHHHHC
Confidence 8886 3345554322 112222 25799999998 9999999877653
No 48
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.92 E-value=7e-25 Score=212.78 Aligned_cols=179 Identities=20% Similarity=0.272 Sum_probs=145.6
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCC-CCC
Q 013425 205 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 283 (443)
Q Consensus 205 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l 283 (443)
..|||++...+|....|+|||+|+|.. .+.++|+|+ +.|..|+||..+++ |++|.+.+|.|. |.+
T Consensus 28 ~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik-----------~~G~~S~~L~~l~~--G~~v~i~gP~G~~f~~ 93 (253)
T cd06221 28 FKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIR-----------RVGRVTEALHELKP--GDTVGLRGPFGNGFPV 93 (253)
T ss_pred cCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEE-----------eCChhhHHHHcCCC--CCEEEEECCcCCCccc
Confidence 358998877777666699999999853 478999994 24889999999999 999999999997 666
Q ss_pred CC-CCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEc
Q 013425 284 PP-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 362 (443)
Q Consensus 284 p~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 362 (443)
+. ..+|+||||+||||||+++++++....... .++++|+|+.|+.+|++|+++|+++.+. .++ ++.+++|
T Consensus 94 ~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~--~~~i~Li~~~r~~~~~~~~~~L~~l~~~-~~~------~~~~~~s 164 (253)
T cd06221 94 EEMKGKDLLLVAGGLGLAPLRSLINYILDNRED--YGKVTLLYGARTPEDLLFKEELKEWAKR-SDV------EVILTVD 164 (253)
T ss_pred ccccCCeEEEEccccchhHHHHHHHHHHhcccc--CCcEEEEEecCChHHcchHHHHHHHHhc-CCe------EEEEEeC
Confidence 53 678999999999999999999998875321 2689999999999999999999999987 778 8888888
Q ss_pred cCCC----CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 363 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 363 r~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
++.+ ..+++++.+.+... -..+..+|+|||+ .|.+++.+.|.+.
T Consensus 165 ~~~~~~~~~~g~v~~~l~~~~~-----~~~~~~vyicGp~-~mv~~~~~~L~~~ 212 (253)
T cd06221 165 RAEEGWTGNVGLVTDLLPELTL-----DPDNTVAIVCGPP-IMMRFVAKELLKL 212 (253)
T ss_pred CCCCCccCCccccchhHHhcCC-----CcCCcEEEEECCH-HHHHHHHHHHHHc
Confidence 7653 35677776554311 0147899999998 9999999888664
No 49
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.92 E-value=9.8e-25 Score=208.59 Aligned_cols=181 Identities=18% Similarity=0.278 Sum_probs=142.7
Q ss_pred CCHHHHHHhcC--CC--CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccC-CCCCCCcEEEEEeecCC
Q 013425 206 MPIDWLVQLVP--PL--KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGS 280 (443)
Q Consensus 206 ~p~~~ll~~lp--~~--~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~ 280 (443)
.|||++...++ .. ..|+|||+|.|.. .+.++|+|+. ...|.+|.||.+ +++ |+.|.+.+|.|.
T Consensus 32 ~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~---------~~~G~~s~~l~~~l~~--Gd~v~i~gP~G~ 99 (235)
T cd06217 32 LAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKR---------VPGGEVSPYLHDEVKV--GDLLEVRGPIGT 99 (235)
T ss_pred CCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEeCCcee
Confidence 57888877765 22 3499999999854 4689999954 356899999985 899 999999999999
Q ss_pred CCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEE
Q 013425 281 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 359 (443)
Q Consensus 281 F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~ 359 (443)
|.++ ...++++|||+||||||+++++++....... .+++|+||+|+.+|.+|++||.++.+.++++ +++.
T Consensus 100 ~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~~---~~i~l~~~~r~~~~~~~~~el~~~~~~~~~~------~~~~ 170 (235)
T cd06217 100 FTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGWP---VPFRLLYSARTAEDVIFRDELEQLARRHPNL------HVTE 170 (235)
T ss_pred eEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCCC---ceEEEEEecCCHHHhhHHHHHHHHHHHCCCe------EEEE
Confidence 9876 4468999999999999999999998876544 7899999999999999999999999865678 8888
Q ss_pred EEccCCC-----CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 360 AFSRKQP-----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 360 a~Sr~~~-----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
++||+.. .++++.+.+.+. +.. -..+..+|+|||+ .|.+++.+.|.+.
T Consensus 171 ~~s~~~~~~~~~~~g~~~~~~l~~---~~~-~~~~~~v~icGp~-~m~~~v~~~l~~~ 223 (235)
T cd06217 171 ALTRAAPADWLGPAGRITADLIAE---LVP-PLAGRRVYVCGPP-AFVEAATRLLLEL 223 (235)
T ss_pred EeCCCCCCCcCCcCcEeCHHHHHh---hCC-CccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 8998632 234554433211 100 0137899999998 9999999887654
No 50
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.91 E-value=1.1e-24 Score=221.11 Aligned_cols=184 Identities=17% Similarity=0.278 Sum_probs=141.1
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEeecCCC
Q 013425 206 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 281 (443)
Q Consensus 206 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 281 (443)
.||||+...++. ...|+|||+|.|. .+.++|+|+. ...|.+|+||. ++++ |+.|.+.+|.|.|
T Consensus 34 ~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~---------~~~G~~S~~l~~~l~~--Gd~v~v~gP~G~f 100 (352)
T TIGR02160 34 APGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKK---------IPGGLFSTWANDEIRP--GDTLEVMAPQGLF 100 (352)
T ss_pred CCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEE---------eCCCcchHHHHhcCCC--CCEEEEeCCceee
Confidence 588988776642 3469999999984 4789999954 35699999996 7999 9999999999999
Q ss_pred CCC-C--CCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCC-CccccCCCeE
Q 013425 282 PRP-P--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGF 357 (443)
Q Consensus 282 ~lp-~--~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~ 357 (443)
.++ . ..+++||||+|||||||+||+++....... .+++|+||+|+++|++|.+||+++.+.++ ++ ++
T Consensus 101 ~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~------~~ 171 (352)
T TIGR02160 101 TPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEPR---STFTLVYGNRRTASVMFAEELADLKDKHPQRF------HL 171 (352)
T ss_pred ecCCCccccccEEEEeccccHhHHHHHHHHHHhcCCC---ceEEEEEEeCCHHHHHHHHHHHHHHHhCcCcE------EE
Confidence 886 3 247999999999999999999998775444 68999999999999999999999987654 47 88
Q ss_pred EEEEccCCCCcccchhhHH-HcHHH-HHHhh--cCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 358 YVAFSRKQPQKVYVQHKML-EQSQR-IWNLL--LSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 358 ~~a~Sr~~~~k~yVqd~l~-~~~~~-l~~~l--~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
+.++|++.....+.+..+. ..... +.++. .....+|+|||+ .|++++++.|.+.
T Consensus 172 ~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~~ 229 (352)
T TIGR02160 172 AHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQ-AMVDDAEQALTGL 229 (352)
T ss_pred EEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 8899986542222222221 11111 11121 125789999998 9999999888764
No 51
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.91 E-value=1.8e-24 Score=204.46 Aligned_cols=174 Identities=18% Similarity=0.278 Sum_probs=138.5
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEeecCCC
Q 013425 206 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 281 (443)
Q Consensus 206 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 281 (443)
.|||++...++. ...|+|||+|.|.. .+.++|+|+ ..|.+|.+|. ++++ |+.|.+.+|.|.|
T Consensus 24 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk-----------~~G~~t~~l~~~l~~--G~~v~i~gP~G~~ 89 (216)
T cd06198 24 RAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIK-----------ALGDYTRRLAERLKP--GTRVTVEGPYGRF 89 (216)
T ss_pred CCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEE-----------eCChHHHHHHHhCCC--CCEEEEECCCCCC
Confidence 589988777763 57899999999853 479999994 3478999998 8999 9999999999999
Q ss_pred CCCCCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEE
Q 013425 282 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 361 (443)
Q Consensus 282 ~lp~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 361 (443)
.++...++++|||+||||||+++++++....... ++++|+||+|+.+|.+|.++|+++.+.+ ++ ++++..
T Consensus 90 ~~~~~~~~~vlia~GtGiap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~-~~------~~~~~~ 159 (216)
T cd06198 90 TFDDRRARQIWIAGGIGITPFLALLEALAARGDA---RPVTLFYCVRDPEDAVFLDELRALAAAA-GV------VLHVID 159 (216)
T ss_pred cccccCceEEEEccccCHHHHHHHHHHHHhcCCC---ceEEEEEEECCHHHhhhHHHHHHHHHhc-Ce------EEEEEe
Confidence 9884478999999999999999999998876543 6899999999999999999999998873 66 777766
Q ss_pred ccCCCCcccchhhHHHcHHHHHHhh--cCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 362 SRKQPQKVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 362 Sr~~~~k~yVqd~l~~~~~~l~~~l--~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
++++. .......+ .+.. ..+..+|+|||+ .|.+++++.|.+.
T Consensus 160 ~~~~~-~~~~~~~~-------~~~~~~~~~~~vyicGp~-~m~~~v~~~l~~~ 203 (216)
T cd06198 160 SPSDG-RLTLEQLV-------RALVPDLADADVWFCGPP-GMADALEKGLRAL 203 (216)
T ss_pred CCCCc-ccchhhhh-------hhcCCCcCCCeEEEECcH-HHHHHHHHHHHHc
Confidence 65433 22222221 0111 237899999998 9999999888663
No 52
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.91 E-value=2.5e-24 Score=206.70 Aligned_cols=181 Identities=22% Similarity=0.307 Sum_probs=141.0
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEeecCCC
Q 013425 206 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 281 (443)
Q Consensus 206 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 281 (443)
.|||++...+|. ..+|+|||+|.+.. +.++|+|++ ...|.+|.||. ++++ |+++.+.+|.|.|
T Consensus 34 ~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~~ 100 (241)
T cd06214 34 RPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKR---------VPGGRFSNWANDELKA--GDTLEVMPPAGRF 100 (241)
T ss_pred CCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEE---------cCCCccchhHHhccCC--CCEEEEeCCcccc
Confidence 588888777752 36899999998854 489999854 35799999997 7999 9999999999999
Q ss_pred CCC-C-CCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCC-CccccCCCeEE
Q 013425 282 PRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFY 358 (443)
Q Consensus 282 ~lp-~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~~ 358 (443)
.++ + ...++||||+|||||||+++++++...... ++++|+||+|+..|++|.+||+++.+.++ ++ ++.
T Consensus 101 ~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~------~~~ 171 (241)
T cd06214 101 TLPPLPGARHYVLFAAGSGITPVLSILKTALAREPA---SRVTLVYGNRTEASVIFREELADLKARYPDRL------TVI 171 (241)
T ss_pred ccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCCC---CcEEEEEEeCCHHHhhHHHHHHHHHHhCcCce------EEE
Confidence 888 4 478999999999999999999998876434 78999999999999999999999987644 67 777
Q ss_pred EEEccCCCC----cccchhhHHHcHHHHHHhh--cCCCEEEEeCCCCchHHHHHHHHHH
Q 013425 359 VAFSRKQPQ----KVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEE 411 (443)
Q Consensus 359 ~a~Sr~~~~----k~yVqd~l~~~~~~l~~~l--~~~~~iyvCG~~~~M~~~V~~~L~~ 411 (443)
.++|+++.. .+.+.+.+... .+.+.. .++..||+|||+ .|.+.+.+.|.+
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~v~icGp~-~mv~~v~~~l~~ 227 (241)
T cd06214 172 HVLSREQGDPDLLRGRLDAAKLNA--LLKNLLDATEFDEAFLCGPE-PMMDAVEAALLE 227 (241)
T ss_pred EEecCCCCCcccccCccCHHHHHH--hhhhhcccccCcEEEEECCH-HHHHHHHHHHHH
Confidence 888876542 22333222111 111121 236899999999 899999977755
No 53
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.91 E-value=2.4e-24 Score=208.15 Aligned_cols=171 Identities=22% Similarity=0.278 Sum_probs=135.9
Q ss_pred CCCHHHHHHhcCC----CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCC
Q 013425 205 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS 280 (443)
Q Consensus 205 ~~p~~~ll~~lp~----~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~ 280 (443)
..|+|++...+|. ...|+|||+|.|.. .+.++|+|+. .|.+|+||.++++ |++|.+.+|.|.
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~-----------~G~~s~~l~~l~~--Gd~v~i~gP~G~ 90 (246)
T cd06218 25 AKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKV-----------VGKGTRLLSELKA--GDELDVLGPLGN 90 (246)
T ss_pred CCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEE-----------ECcchHHHhcCCC--CCEEEEEecCCC
Confidence 3578887666653 46899999998843 4789999853 3778999999999 999999999995
Q ss_pred -CCCCCCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEE
Q 013425 281 -LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 359 (443)
Q Consensus 281 -F~lp~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~ 359 (443)
|.+++...++||||+|||||||++++++..... .+++||||+|+.+|.+|++||+++.. ++.+
T Consensus 91 ~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~eL~~l~~-----------~~~~ 154 (246)
T cd06218 91 GFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAERG-----IKVTVLLGFRSADDLFLVEEFEALGA-----------EVYV 154 (246)
T ss_pred CcCCCCCCCcEEEEecccCHHHHHHHHHHHHhcC-----CceEEEEEccchhhhhhHHHHHhhCC-----------cEEE
Confidence 777765789999999999999999999987632 68999999999999999999999853 2222
Q ss_pred EEccCC--CCcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 360 AFSRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 360 a~Sr~~--~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
++++. ..++||++.+.+.... ..+..||+|||+ .|++++++.|.+.
T Consensus 155 -~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp~-~mv~~~~~~L~~~ 202 (246)
T cd06218 155 -ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGPE-PMLKAVAELAAER 202 (246)
T ss_pred -EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECCH-HHHHHHHHHHHhc
Confidence 23322 2467899877665332 147899999998 9999999888764
No 54
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.91 E-value=4.5e-24 Score=203.63 Aligned_cols=182 Identities=18% Similarity=0.200 Sum_probs=142.7
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCCCC
Q 013425 206 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 282 (443)
Q Consensus 206 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~ 282 (443)
.|||++...+|. ...|+|||+|.+.. .+.++|+|+. ...|.+|.||.++++ |++|.+.+|.|.|.
T Consensus 30 ~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~---------~~~G~~s~~l~~~~~--G~~v~i~gP~G~~~ 97 (234)
T cd06183 30 PVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKI---------YPGGKMSQYLHSLKP--GDTVEIRGPFGKFE 97 (234)
T ss_pred CcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEE---------CCCCcchhHHhcCCC--CCEEEEECCcccee
Confidence 588888777764 46899999999854 4689999953 346999999999999 99999999999998
Q ss_pred CC-CCC-CCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcC-CCccccCCCeEEE
Q 013425 283 RP-PPS-VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGFYV 359 (443)
Q Consensus 283 lp-~~~-~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~~~~~~~~~~ 359 (443)
++ ... .++||||+||||||+++++++....... ..+++|+||+|+.+|.+|.+||+++.+.+ +++ ++++
T Consensus 98 ~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~--~~~i~l~~~~r~~~~~~~~~~l~~~~~~~~~~~------~~~~ 169 (234)
T cd06183 98 YKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPED--KTKISLLYANRTEEDILLREELDELAKKHPDRF------KVHY 169 (234)
T ss_pred ecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCc--CcEEEEEEecCCHHHhhhHHHHHHHHHhCcccE------EEEE
Confidence 86 444 7999999999999999999998765311 26899999999999999999999998763 567 7888
Q ss_pred EEccCCC----CcccchhhHHHcHHHHHHh-hcCCCEEEEeCCCCchHH-HHHHHHHH
Q 013425 360 AFSRKQP----QKVYVQHKMLEQSQRIWNL-LLSKASIYVAGSATKMPS-DVWSTFEE 411 (443)
Q Consensus 360 a~Sr~~~----~k~yVqd~l~~~~~~l~~~-l~~~~~iyvCG~~~~M~~-~V~~~L~~ 411 (443)
++++++. ..+++++.+.+.. ... ...+..+|+|||+ .|.+ ++++.|.+
T Consensus 170 ~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~icGp~-~~~~~~~~~~l~~ 223 (234)
T cd06183 170 VLSRPPEGWKGGVGFITKEMIKEH---LPPPPSEDTLVLVCGPP-PMIEGAVKGLLKE 223 (234)
T ss_pred EEcCCCcCCccccceECHHHHHHh---CCCCCCCCeEEEEECCH-HHHHHHHHHHHHH
Confidence 8887543 2466665432211 000 1236789999998 9999 88877754
No 55
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.90 E-value=5.9e-24 Score=207.43 Aligned_cols=174 Identities=19% Similarity=0.235 Sum_probs=137.4
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCC-CCC
Q 013425 205 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 283 (443)
Q Consensus 205 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l 283 (443)
..|||++...+|...+|+|||++.+ .+.++|+|+ +.|.+|+||..+++ |+.|.+.+|.|. |.+
T Consensus 33 ~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik-----------~~G~~S~~L~~l~~--Gd~v~v~gP~G~~f~~ 96 (263)
T PRK08221 33 VKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIR-----------RVGKVTDEIFNLKE--GDKLFLRGPYGNGFPV 96 (263)
T ss_pred CCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEE-----------eCCchhhHHHhCCC--CCEEEEECCCCCCccc
Confidence 3589998877887667999999975 478999994 23999999999999 999999999987 777
Q ss_pred C-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEc
Q 013425 284 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 362 (443)
Q Consensus 284 p-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 362 (443)
+ ...+|+||||+|||||||+|++++....... ..+++||||+|+.+|++|++||++|.+. + +++++++
T Consensus 97 ~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~--~~~v~L~~g~r~~~~l~~~~el~~~~~~---~------~~~~~~~ 165 (263)
T PRK08221 97 DTYKGKELIVVAGGTGVAPVKGLMRYFYENPQE--IKSLDLILGFKNPDDILFKEDLKRWREK---I------NLILTLD 165 (263)
T ss_pred CccCCccEEEEcccccHHHHHHHHHHHHhCccc--CceEEEEEecCCHHHhhHHHHHHHHhhc---C------cEEEEec
Confidence 6 5568999999999999999999998764321 2589999999999999999999999875 3 3445566
Q ss_pred cCCC----CcccchhhHHHcHHHHHHhhc--CCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 363 RKQP----QKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 363 r~~~----~k~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
++.. ..++|++.+.+. .+. .+..+|+|||+ .|.+++.+.|.+.
T Consensus 166 ~~~~~~~~~~G~v~~~l~~~------~~~~~~~~~vylCGp~-~mv~~~~~~L~~~ 214 (263)
T PRK08221 166 EGEEGYRGNVGLVTKYIPEL------TLKDIDNMQVIVVGPP-IMMKFTVLEFLKR 214 (263)
T ss_pred CCCCCCccCccccChhhHhc------cCCCcCCeEEEEECCH-HHHHHHHHHHHHc
Confidence 5432 346666544332 111 36889999999 9999999888654
No 56
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.90 E-value=1.3e-23 Score=197.65 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=134.1
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccC-Cccccccc-CCCCCCCcEEEEEeecCCCC
Q 013425 205 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLA-GLDPQQGIYIPAWFQKGSLP 282 (443)
Q Consensus 205 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~-G~~S~~L~-~l~~~~G~~v~i~~~~g~F~ 282 (443)
..|||++...+|....|+|||+|.|.+ .+.++|+|+.+ .. +.+|.||. .+++ |++|.+.+|.|.|.
T Consensus 26 ~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~---------~~g~~~s~~l~~~~~~--Gd~v~i~gP~g~f~ 93 (211)
T cd06185 26 FEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLRE---------PASRGGSRYMHELLRV--GDELEVSAPRNLFP 93 (211)
T ss_pred CCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEec---------cCCCchHHHHHhcCCC--CCEEEEcCCccCCc
Confidence 458999888887777899999999854 48899999542 33 34799997 5899 99999999999998
Q ss_pred CCCCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEc
Q 013425 283 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 362 (443)
Q Consensus 283 lp~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 362 (443)
++...+|+||||+||||||+++++++..... .++.|+||+|+.+|.+|.+||+++. . ..+ .+.++
T Consensus 94 ~~~~~~~~v~ia~GtGiap~~~il~~~~~~~-----~~v~l~~~~r~~~~~~~~~~l~~~~-~-~~~--------~~~~~ 158 (211)
T cd06185 94 LDEAARRHLLIAGGIGITPILSMARALAARG-----ADFELHYAGRSREDAAFLDELAALP-G-DRV--------HLHFD 158 (211)
T ss_pred CCCCCCcEEEEeccchHhHHHHHHHHHHhCC-----CCEEEEEEeCCCcchhHHHHHhhhc-C-CcE--------EEEEC
Confidence 8744689999999999999999999986532 5799999999999999999999987 2 334 44455
Q ss_pred cCCCCcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 363 RKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 363 r~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
+.. ...++++.+.. ..++..+|+|||+ .|++++.+.|.+.
T Consensus 159 ~~~-~~~~~~~~~~~--------~~~~~~vyicGp~-~m~~~~~~~l~~~ 198 (211)
T cd06185 159 DEG-GRLDLAALLAA--------PPAGTHVYVCGPE-GMMDAVRAAAAAL 198 (211)
T ss_pred CCC-CccCHHHHhcc--------CCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 543 23444444332 2346899999998 9999999877663
No 57
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.90 E-value=1.5e-23 Score=208.40 Aligned_cols=194 Identities=17% Similarity=0.136 Sum_probs=139.3
Q ss_pred CCHHHHHHhcCC-------CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeec
Q 013425 206 MPIDWLVQLVPP-------LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQK 278 (443)
Q Consensus 206 ~p~~~ll~~lp~-------~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~ 278 (443)
.|||++...++. ...|+||++|+|.. .+.++|+|+.+.-..+......|.+|+||..+++ ||.|.+.+|.
T Consensus 65 ~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~-~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~ 141 (300)
T PTZ00319 65 PIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE-KGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKL--GDKIEMRGPV 141 (300)
T ss_pred ccceEEEEEEEeCCCCccceEEeeeccCCCccc-CCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCC--CCEEEEEccc
Confidence 478887666642 24699999999853 5789999976411111111246999999999999 9999999999
Q ss_pred CCCCCC-CC---------------CCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHh
Q 013425 279 GSLPRP-PP---------------SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSH 342 (443)
Q Consensus 279 g~F~lp-~~---------------~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~ 342 (443)
|.|.++ +. ..|++|||+|||||||++++++....... ..++.|+||+|+.+|.+|.+||+++
T Consensus 142 G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~~--~~~i~liyg~r~~~dl~~~~eL~~~ 219 (300)
T PTZ00319 142 GKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKED--RTKVFLVYANQTEDDILLRKELDEA 219 (300)
T ss_pred eeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCCC--CceEEEEEecCCHHHhhHHHHHHHH
Confidence 998654 11 24899999999999999999998765322 1579999999999999999999996
Q ss_pred hhcCCCccccCCCeEEEEEccCCC-----CcccchhhHHHcH-HHHH-H-hhcCCCEEEEeCCCCchHH-HHHHHHHHH
Q 013425 343 SLNDGVFSEAKGGGFYVAFSRKQP-----QKVYVQHKMLEQS-QRIW-N-LLLSKASIYVAGSATKMPS-DVWSTFEEI 412 (443)
Q Consensus 343 ~~~~g~l~~~~~~~~~~a~Sr~~~-----~k~yVqd~l~~~~-~~l~-~-~l~~~~~iyvCG~~~~M~~-~V~~~L~~i 412 (443)
.+. +++ +++.+.+++.. ..++|++.+.+.. .... + ...++..+|+|||+ .|++ .+.+.|.+.
T Consensus 220 ~~~-~~~------~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~vyiCGp~-~mv~~~~~~~L~~~ 290 (300)
T PTZ00319 220 AKD-PRF------HVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDPQNSGIKKVMALMCGPP-PMLQMAVKPNLEKI 290 (300)
T ss_pred hhC-CCE------EEEEEECCCCCCCcccccceeCHHHHHhhcCCccccccccCCeEEEEECCH-HHHHHHHHHHHHHc
Confidence 554 778 88888888432 3567776443221 1000 0 00024789999999 8887 466666543
No 58
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.90 E-value=1.5e-23 Score=204.35 Aligned_cols=176 Identities=18% Similarity=0.197 Sum_probs=135.7
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCC-CCC
Q 013425 205 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 283 (443)
Q Consensus 205 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l 283 (443)
..|||++...+|...+|+|||+|.+ .+.++|+|+ +.|.+|++|.++++ ||+|.+.+|.|. |.+
T Consensus 31 ~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk-----------~~G~~S~~L~~l~~--Gd~v~i~gP~G~~f~~ 94 (261)
T TIGR02911 31 VKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIR-----------RVGKVTDEVFTLKE--GDNLFLRGPYGNGFDV 94 (261)
T ss_pred CCCCcEEEEEecCCCccceecCCCC---CCeEEEEEE-----------eCchhhHHHHcCCC--CCEEEEecCCCCCccc
Confidence 3689998888887778999999853 478999994 34899999999999 999999999997 777
Q ss_pred C-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEc
Q 013425 284 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 362 (443)
Q Consensus 284 p-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 362 (443)
+ ...+|++|||+||||||+++++++....... ..+++||||+|+.+|++|++||++|.+. .++ ...++
T Consensus 95 ~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~--~~~v~L~~~~r~~~~~~~~~eL~~l~~~-~~~--------~~~~~ 163 (261)
T TIGR02911 95 DNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKE--IKSLNLILGFKTPDDILFKEDIAEWKGN-INL--------TLTLD 163 (261)
T ss_pred CccCCceEEEEecccCcHHHHHHHHHHHhCccc--CceEEEEEecCCHHHhhHHHHHHHHHhc-CcE--------EEEEc
Confidence 6 4568999999999999999999987654321 2589999999999999999999999875 333 33444
Q ss_pred cCCC----CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 363 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 363 r~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
++.+ ..+++++.+.+.. + .. ..+.++|+|||+ .|.+++.+.|.+.
T Consensus 164 ~~~~~~~~~~g~v~~~l~~~~--~-~~-~~~~~v~lCGp~-~mv~~~~~~L~~~ 212 (261)
T TIGR02911 164 EAEEDYKGNIGLVTKYIPELT--L-KD-IEEVQAIVVGPP-IMMKFTVQELLKK 212 (261)
T ss_pred CCCCCCcCCeeccCHhHHhcc--C-CC-ccceEEEEECCH-HHHHHHHHHHHHc
Confidence 4322 2456665543310 0 00 136789999999 9999999887664
No 59
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.90 E-value=2.6e-23 Score=208.21 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=135.1
Q ss_pred CCHHHHHHhcC-C-----CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecC
Q 013425 206 MPIDWLVQLVP-P-----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG 279 (443)
Q Consensus 206 ~p~~~ll~~lp-~-----~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g 279 (443)
.|+|++...++ . ...|+|||+|+|.. .+.++|+|++ ...|..|+||.++++ ||+|.+.+|.+
T Consensus 83 ~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~---------~~~G~~S~~L~~lk~--Gd~v~v~GP~f 150 (325)
T PTZ00274 83 KPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKR---------KKDGLMTNHLFGMHV--GDKLLFRSVTF 150 (325)
T ss_pred CCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEE---------cCCCcccHHHhcCCC--CCEEEEeCCee
Confidence 46777653222 1 24699999999954 5789999954 478999999999999 99999999877
Q ss_pred CCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCC--C-CCCCEEEEEeecCCccccCHHHHHHhhhcCC-CccccCC
Q 013425 280 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS--G-PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKG 354 (443)
Q Consensus 280 ~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~--~-~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~ 354 (443)
.|.++ +..+|+||||+|||||||++|+++...+... . ...+++|+||+|+.+|++|++||+++++.++ ++
T Consensus 151 ~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f----- 225 (325)
T PTZ00274 151 KIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRF----- 225 (325)
T ss_pred ecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcE-----
Confidence 66654 4457999999999999999999988765321 0 1258999999999999999999999998765 58
Q ss_pred CeEEEEEccCCC------CcccchhhH-HHcHHHHHHhhc-CCCEEEEeCCCCchHHHHHHH
Q 013425 355 GGFYVAFSRKQP------QKVYVQHKM-LEQSQRIWNLLL-SKASIYVAGSATKMPSDVWST 408 (443)
Q Consensus 355 ~~~~~a~Sr~~~------~k~yVqd~l-~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~V~~~ 408 (443)
+++.+.|++.+ ..++|.+.+ .+.. .... .+..+|+|||+ .|.+.|...
T Consensus 226 -~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~----~~~~~~~~~vylCGPp-~Mm~av~~~ 281 (325)
T PTZ00274 226 -KVYYTIDQAVEPDKWNHFLGYVTKEMVRRTM----PAPEEKKKIIMLCGPD-QLLNHVAGT 281 (325)
T ss_pred -EEEEEeCCCCcccCCCCCCCccCHHHHHHhc----CCCccCCcEEEEeCCH-HHHHHhcCC
Confidence 88888887422 245665543 2210 0011 13579999999 999888543
No 60
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.89 E-value=4.5e-23 Score=200.79 Aligned_cols=178 Identities=19% Similarity=0.254 Sum_probs=138.4
Q ss_pred CCHHHHHHhcCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEeecCCC
Q 013425 206 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 281 (443)
Q Consensus 206 ~p~~~ll~~lp~~---~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 281 (443)
-||||+...++.- ..|.|||+|+|.. ++.+.|+|++ ...|..|+||+ ++++ ||+|.+..|.|.|
T Consensus 36 ~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~---------~~~G~~S~~Lh~~lk~--Gd~l~v~~P~G~F 103 (266)
T COG1018 36 EPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKR---------EDGGGGSNWLHDHLKV--GDTLEVSAPAGDF 103 (266)
T ss_pred CCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEE---------eCCCcccHHHHhcCCC--CCEEEEecCCCCc
Confidence 5899988777754 7899999999965 4689999954 35599999999 8999 9999999999999
Q ss_pred CCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEE
Q 013425 282 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 360 (443)
Q Consensus 282 ~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 360 (443)
.++ .+..|++|||+|+|||||+||+++....+. .++.|+|++|+++|..|+|| +.+.+.++... .+...
T Consensus 104 ~l~~~~~~~~llla~G~GITP~lSml~~~~~~~~----~~v~l~h~~R~~~~~af~de-~~l~~~~~~~~-----~~~~~ 173 (266)
T COG1018 104 VLDDLPERKLLLLAGGIGITPFLSMLRTLLDRGP----ADVVLVHAARTPADLAFRDE-LELAAELPNAL-----LLGLY 173 (266)
T ss_pred cCCCCCCCcEEEEeccccHhHHHHHHHHHHHhCC----CCEEEEEecCChhhcchhhH-HHHHhhCCCCe-----eEEEE
Confidence 998 566799999999999999999999877542 47999999999999999999 88887766542 44444
Q ss_pred EccCCCCcccchhhHHHcHHHHHHhhcC-CCEEEEeCCCCchHHHHHHHHHHHH
Q 013425 361 FSRKQPQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIV 413 (443)
Q Consensus 361 ~Sr~~~~k~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~V~~~L~~i~ 413 (443)
+++.. ..+|+.- ..+...... +..+|+|||. +|.++|+..|.+..
T Consensus 174 ~~~~~-~~g~~~~------~~l~~~~~~~~r~~y~CGp~-~fm~av~~~l~~~g 219 (266)
T COG1018 174 TERGK-LQGRIDV------SRLLSAAPDGGREVYLCGPG-PFMQAVRLALEALG 219 (266)
T ss_pred EecCC-ccccccH------HHHhccCCCCCCEEEEECCH-HHHHHHHHHHHHcC
Confidence 44221 1222221 111112222 4899999998 99999998887764
No 61
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.89 E-value=7.2e-23 Score=193.75 Aligned_cols=185 Identities=19% Similarity=0.327 Sum_probs=154.1
Q ss_pred CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCcc
Q 013425 219 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTG 298 (443)
Q Consensus 219 ~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piImIa~GTG 298 (443)
.-|.||+||-|.+ -+.|.|-|++..-+-.....+.|.||+|+.+|++ ||+|.|.+|.|.|...+.++|+|||++|.|
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKp--GDKvtisGPfGEfFaKdtdaemvFigGGAG 286 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGAG 286 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecC--CCeEEEeccchhhhhccCCCceEEEecCcC
Confidence 4589999999976 5889999988766555567889999999999999 999999999999988888899999999999
Q ss_pred chhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEccCCCC------cccch
Q 013425 299 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ------KVYVQ 372 (443)
Q Consensus 299 IAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~------k~yVq 372 (443)
.||+||.+-....+..+ .+++.+.||+|+..+.+|++|.+++++.+++| +.++|.|.+.++ .+++.
T Consensus 287 mapmRSHIfDqL~rlhS--kRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF------~wH~aLSdplpEDnW~g~TgFih 358 (410)
T COG2871 287 MAPMRSHIFDQLKRLHS--KRKISFWYGARSLREMFYQEDFDQLQAENPNF------HWHLALSDPLPEDNWDGYTGFIH 358 (410)
T ss_pred cCchHHHHHHHHHhhcc--cceeeeeeccchHHHhHHHHHHHHHHhhCCCc------EEEEEecCCCCcCCcccchhHHH
Confidence 99999998877765433 28999999999999999999999999998999 999999998763 34555
Q ss_pred hhHHHcHHHHHHhh-cCCCEEEEeCCCCchHHHHHHHHHHHHHHhC
Q 013425 373 HKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKEG 417 (443)
Q Consensus 373 d~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~V~~~L~~i~~~~~ 417 (443)
..+.+. .+.++- .+++.+|+|||+ .|..+|.+.|.+...+..
T Consensus 359 nv~~en--~Lk~h~aPEDceyYmCGPp-~mNasvikmL~dlGVE~e 401 (410)
T COG2871 359 NVLYEN--YLKDHEAPEDCEYYMCGPP-LMNASVIKMLKDLGVERE 401 (410)
T ss_pred HHHHhh--hhhcCCCchheeEEeeCcc-hhhHHHHHHHHhcCcccc
Confidence 555433 222222 238999999999 999999998888766543
No 62
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.89 E-value=6.8e-23 Score=198.43 Aligned_cols=165 Identities=21% Similarity=0.290 Sum_probs=132.4
Q ss_pred CCHHHHHHhcCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCC-C
Q 013425 206 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-L 281 (443)
Q Consensus 206 ~p~~~ll~~lp~~---~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F 281 (443)
.||||+...+|.. .+|+|||+|+| .+.++|+|+ ..|..|+||.++++ |++|.+.+|.|. |
T Consensus 33 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk-----------~~G~~t~~l~~l~~--G~~v~i~gP~G~~f 96 (250)
T PRK00054 33 KPGQFVMVWVPGVEPLLERPISISDID---KNEITILYR-----------KVGEGTKKLSKLKE--GDELDIRGPLGNGF 96 (250)
T ss_pred CCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEE-----------EcChHHHHHhcCCC--CCEEEEEcccCCCC
Confidence 5888877766644 68999999998 489999994 24889999999999 999999999986 8
Q ss_pred CCCCCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEE
Q 013425 282 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 361 (443)
Q Consensus 282 ~lp~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 361 (443)
.++....|+||||+||||||+++++++..... .++.|+|++|+.+|++|.+||+++.+ + ++..
T Consensus 97 ~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~el~~~~~----~--------~~~~ 159 (250)
T PRK00054 97 DLEEIGGKVLLVGGGIGVAPLYELAKELKKKG-----VEVTTVLGARTKDEVIFEEEFAKVGD----V--------YVTT 159 (250)
T ss_pred CCCCCCCeEEEEeccccHHHHHHHHHHHHHcC-----CcEEEEEEcCCHHHhhhHHHHHhcCC----E--------EEEe
Confidence 87755689999999999999999999987643 57999999999999999999998431 2 2222
Q ss_pred ccCC--CCcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 362 SRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 362 Sr~~--~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
++. ..++||++.+.+.. .+...||+|||+ .|.+++.+.|.+.
T Consensus 160 -~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp~-~m~~~v~~~l~~~ 203 (250)
T PRK00054 160 -DDGSYGFKGFVTDVLDELD-------SEYDAIYSCGPE-IMMKKVVEILKEK 203 (250)
T ss_pred -cCCCCCcccchhHhHhhhc-------cCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence 222 24678888775442 235689999998 9999999888774
No 63
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.88 E-value=1.5e-22 Score=194.02 Aligned_cols=164 Identities=22% Similarity=0.276 Sum_probs=129.8
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCC-CCC
Q 013425 205 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 283 (443)
Q Consensus 205 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l 283 (443)
..||||+...+|....|+|||+|+| +.++|+|+ +.|.+|+||.++++ |+.|.+.+|.|. |.+
T Consensus 24 ~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~-----------~~G~~s~~L~~l~~--Gd~v~i~gP~G~~f~~ 86 (233)
T cd06220 24 FKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVK-----------KVGEATSALHDLKE--GDKLGIRGPYGNGFEL 86 (233)
T ss_pred CCCCceEEEEeCCCCcceeEEecCC----CeEEEEEE-----------ecChHHHHHHhcCC--CCEEEEECcCCCCccC
Confidence 3589998777776667999999997 68999984 24899999999999 999999999997 777
Q ss_pred CCCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEcc
Q 013425 284 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 363 (443)
Q Consensus 284 p~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 363 (443)
+ .+|+||||+|||||||++++++.... .+++|+||+|+++|++|++||++. ..+ . +..+.
T Consensus 87 ~--~~~~vliAgGtGitP~~sil~~~~~~------~~i~l~~~~r~~~d~~~~~eL~~~----~~~------~--~~~~~ 146 (233)
T cd06220 87 V--GGKVLLIGGGIGIAPLAPLAERLKKA------ADVTVLLGARTKEELLFLDRLRKS----DEL------I--VTTDD 146 (233)
T ss_pred C--CCeEEEEecCcChHHHHHHHHHHHhc------CCEEEEEecCChHHChhHHHHhhC----CcE------E--EEEeC
Confidence 5 67999999999999999999988754 479999999999999999999972 222 2 22221
Q ss_pred -CCCCcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 364 -KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 364 -~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
.....+++++.+.+.. ......+|+|||+ .|.+++.+.|.+.
T Consensus 147 ~~~~~~g~~~~~l~~~~------~~~~~~vyicGp~-~m~~~~~~~L~~~ 189 (233)
T cd06220 147 GSYGFKGFVTDLLKELD------LEEYDAIYVCGPE-IMMYKVLEILDER 189 (233)
T ss_pred CCCcccceehHHHhhhc------ccCCCEEEEECCH-HHHHHHHHHHHhc
Confidence 1123577877665432 1235689999998 9999999888664
No 64
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.88 E-value=1.7e-22 Score=195.51 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=130.7
Q ss_pred CCHHHHHHhcC-CCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEE-EEEeecCCCCC
Q 013425 206 MPIDWLVQLVP-PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLPR 283 (443)
Q Consensus 206 ~p~~~ll~~lp-~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~i~~~~g~F~l 283 (443)
.|+||+...++ ....|+|||+|.|.. .+.++|+|+ +.|..|.+|.++++ |+.+ .+.+|.|.|.+
T Consensus 28 ~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk-----------~~G~~t~~l~~l~~--G~~v~~i~gP~G~~~~ 93 (248)
T cd06219 28 KPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQ-----------VVGKSTRELATLEE--GDKIHDVVGPLGKPSE 93 (248)
T ss_pred CCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEE-----------eCCchHHHHHhcCC--CCEeeeeecCCCCCee
Confidence 58898776654 345799999998743 478999984 24888999999999 9999 69999998765
Q ss_pred CCCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEcc
Q 013425 284 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 363 (443)
Q Consensus 284 p~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 363 (443)
.+...++||||+||||||+++++++..... .++.|+||+|+.+|++|.+||+++.++ ++.+ ++
T Consensus 94 ~~~~~~~lliagG~GiaP~~~~l~~~~~~~-----~~v~l~~~~r~~~~~~~~~el~~l~~~-----------~~~~-~~ 156 (248)
T cd06219 94 IENYGTVVFVGGGVGIAPIYPIAKALKEAG-----NRVITIIGARTKDLVILEDEFRAVSDE-----------LIIT-TD 156 (248)
T ss_pred cCCCCeEEEEeCcccHHHHHHHHHHHHHcC-----CeEEEEEEcCCHHHhhhHHHHHhhcCe-----------EEEE-eC
Confidence 544679999999999999999999976542 579999999999999999999998643 2222 33
Q ss_pred CC--CCcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHH
Q 013425 364 KQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 411 (443)
Q Consensus 364 ~~--~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~ 411 (443)
+. ...+|+++.+.+.... ......+|+|||+ .|.+.+.+.|.+
T Consensus 157 ~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGP~-~m~~~~~~~l~~ 201 (248)
T cd06219 157 DGSYGEKGFVTDPLKELIES----GEKVDLVIAIGPP-IMMKAVSELTRP 201 (248)
T ss_pred CCCCCccccchHHHHHHHhc----cCCccEEEEECCH-HHHHHHHHHHHH
Confidence 32 2356777765443211 1234689999999 999999987764
No 65
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.88 E-value=1.8e-22 Score=198.87 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=131.5
Q ss_pred CCHHHHHHhcCC-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEE-EEEeecCCCCC
Q 013425 206 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLPR 283 (443)
Q Consensus 206 ~p~~~ll~~lp~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~i~~~~g~F~l 283 (443)
.|+||+...++. ..+|+|||+|.+.. .+.++|+|++ .|..|.+|+++++ |++| .+.+|.|.|..
T Consensus 29 ~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~-----------~G~~T~~L~~l~~--Gd~v~~i~GP~G~~~~ 94 (281)
T PRK06222 29 KPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQA-----------VGKSTRKLAELKE--GDSILDVVGPLGKPSE 94 (281)
T ss_pred CCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEe-----------CCcHHHHHhcCCC--CCEEeeEEcCCCCCcc
Confidence 589998777754 34689999998743 5789999943 4899999999999 9999 79999998765
Q ss_pred CCCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEcc
Q 013425 284 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 363 (443)
Q Consensus 284 p~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 363 (443)
++..++++|||+|+||||+++++++...+. .++.++||+|+++|.+|.+||+++... ++++ +.
T Consensus 95 ~~~~~~~llIaGGiGiaPl~~l~~~l~~~~-----~~v~l~~g~r~~~d~~~~~el~~~~~~-----------~~v~-~~ 157 (281)
T PRK06222 95 IEKFGTVVCVGGGVGIAPVYPIAKALKEAG-----NKVITIIGARNKDLLILEDEMKAVSDE-----------LYVT-TD 157 (281)
T ss_pred cCCCCeEEEEeCcCcHHHHHHHHHHHHHCC-----CeEEEEEecCCHHHhhcHHHHHhhCCe-----------EEEE-cC
Confidence 533579999999999999999999876542 579999999999999999999987643 2222 23
Q ss_pred CCC--CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 364 KQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 364 ~~~--~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
+.. .+++|++.+.+.... ..+...||+|||+ .|.+++.+.+.+.
T Consensus 158 d~~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP~-~M~~~v~~~l~~~ 203 (281)
T PRK06222 158 DGSYGRKGFVTDVLKELLES----GKKVDRVVAIGPV-IMMKFVAELTKPY 203 (281)
T ss_pred CCCcCcccchHHHHHHHhhc----CCCCcEEEEECCH-HHHHHHHHHHHhc
Confidence 221 467787766543211 1114579999999 9999999887654
No 66
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.88 E-value=3.9e-22 Score=193.41 Aligned_cols=177 Identities=20% Similarity=0.276 Sum_probs=145.2
Q ss_pred CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCCCCCC
Q 013425 205 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP 284 (443)
Q Consensus 205 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp 284 (443)
..||||+...+|....|+|||+|.+.. .+.++|.|++ ...|..|.++..+++ ||.|.+.+|.|++.+.
T Consensus 36 ~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~---------~~~G~~T~~i~~~k~--gd~i~v~GP~G~~~~~ 103 (252)
T COG0543 36 FKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRV---------YEVGKVTKYIFGLKE--GDKIRVRGPLGNGFLR 103 (252)
T ss_pred cCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEE---------EeCChHHHHHhhccC--CCEEEEEcCCCCCccc
Confidence 469999999999999999999999964 5777777754 468999999999999 9999999999987766
Q ss_pred -CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEc-
Q 013425 285 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS- 362 (443)
Q Consensus 285 -~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S- 362 (443)
+..+|+++||+|||+||+++++++....+.. .+++++||.|++.|+++.+|++++... +++.+.+
T Consensus 104 ~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~---~~V~~~~G~~~~~dl~~~~el~~~~~~----------~~~~~~~~ 170 (252)
T COG0543 104 EKIGKPVLLIAGGTGIAPLYAIAKELKEKGDA---NKVTLLYGARTAKDLLLLDELEELAEK----------EVHPVTDD 170 (252)
T ss_pred cccCCcEEEEecccCHhHHHHHHHHHHhcCCC---ceEEEEEeccChhhcccHHHHHHhhcC----------cEEEEECC
Confidence 6778899999999999999999999886522 689999999999999999999999864 2344443
Q ss_pred cCCCCcccc-hhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHHH
Q 013425 363 RKQPQKVYV-QHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV 413 (443)
Q Consensus 363 r~~~~k~yV-qd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i~ 413 (443)
.....+++| ++.+.+.... +...+|+|||+ .|.+.+.+.+.+-.
T Consensus 171 ~~~G~~G~v~~~~~~~~~~~------~~~~v~~cGp~-~M~~~v~~~~~~~g 215 (252)
T COG0543 171 GWKGRKGFVTTDVLKELLDL------EVDDVYICGPP-AMVKAVREKLKEYG 215 (252)
T ss_pred CCCccCcceeHHHHhhhccc------cCCEEEEECCH-HHHHHHHHHHHhcC
Confidence 222258888 7776654211 46899999999 99999997777643
No 67
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.87 E-value=4.9e-22 Score=191.49 Aligned_cols=170 Identities=17% Similarity=0.131 Sum_probs=129.8
Q ss_pred CCHHHHHHhcC---CCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCCCC
Q 013425 206 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 282 (443)
Q Consensus 206 ~p~~~ll~~lp---~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~ 282 (443)
.|+||+...++ ....|+|||+|.+.. .++++|+|+ ..|..|.||.++++ |+.|.+.+|.|.|.
T Consensus 26 ~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~-----------~~G~~t~~l~~~~~--G~~l~i~gP~G~~~ 91 (243)
T cd06192 26 RPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVE-----------IRGPKTKLIAELKP--GEKLDVMGPLGNGF 91 (243)
T ss_pred CCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEE-----------EcCchHHHHHhCCC--CCEEEEEccCCCCC
Confidence 57888776663 456899999999853 488999984 24889999999999 99999999999876
Q ss_pred CC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEE
Q 013425 283 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 361 (443)
Q Consensus 283 lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 361 (443)
+. +..++++|||+|||||||++++++..... .++.|+||+|+++|.+|.+||+++.. .+.. .
T Consensus 92 ~~~~~~~~~lliagGtGiap~~~~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~el~~~~~-----------~~~~-~ 154 (243)
T cd06192 92 EGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG-----NKVTVLAGAKKAKEEFLDEYFELPAD-----------VEIW-T 154 (243)
T ss_pred ccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC-----CeEEEEEecCcHHHHHHHHHHHhhcC-----------eEEE-E
Confidence 55 45689999999999999999999987642 68999999999999999999988721 2222 2
Q ss_pred ccCCC--CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHHH
Q 013425 362 SRKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV 413 (443)
Q Consensus 362 Sr~~~--~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i~ 413 (443)
+++.. ..+++++... . .. ...+..+|+|||+ .|.+++++.|.+..
T Consensus 155 ~~~~~~~~~g~v~~~~~----~-~~-~~~~~~v~icGp~-~mv~~~~~~l~~~g 201 (243)
T cd06192 155 TDDGELGLEGKVTDSDK----P-IP-LEDVDRIIVAGSD-IMMKAVVEALDEWL 201 (243)
T ss_pred ecCCCCccceeechhhh----h-hh-cccCCEEEEECCH-HHHHHHHHHHHhhc
Confidence 33322 3455655311 1 11 1235689999998 99999999887764
No 68
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.86 E-value=8.6e-22 Score=187.24 Aligned_cols=144 Identities=19% Similarity=0.320 Sum_probs=110.7
Q ss_pred CcceeecCCCCCCCC--CeEEEEEEEEEecCCCCcccCCcccccccCCCCC---CCcEEEEEeecCCCCCCC----CCCC
Q 013425 219 KTRAFSISSSPLAHP--NQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQ---QGIYIPAWFQKGSLPRPP----PSVP 289 (443)
Q Consensus 219 ~pR~YSIaSsp~~~~--~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~---~G~~v~i~~~~g~F~lp~----~~~p 289 (443)
..|+|||||+|..++ +.++|+|+. .|.+|+||.+.... .|+.|.+.+|.|.|.++. ..++
T Consensus 59 ~~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~~~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~ 127 (220)
T cd06197 59 FVRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERK 127 (220)
T ss_pred ceeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHHhhhcccCCCceEEEEecCCcccCCcccccCCce
Confidence 359999999996542 789999842 39999999764321 289999999999998872 3579
Q ss_pred eEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEccCCCCcc
Q 013425 290 LILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKV 369 (443)
Q Consensus 290 iImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~ 369 (443)
++|||+|||||||++++++....... ..++.|+||+|+.+|.+|.+||+++... .. .+.. ++.
T Consensus 128 illIagG~GItP~~sil~~l~~~~~~--~~~v~l~~~~r~~~~~~~~~el~~~~~~--~~------~~~~-~~~------ 190 (220)
T cd06197 128 MVWIAGGVGITPFLAMLRAILSSRNT--TWDITLLWSLREDDLPLVMDTLVRFPGL--PV------STTL-FIT------ 190 (220)
T ss_pred EEEEecccchhhHHHHHHHHHhcccC--CCcEEEEEEecchhhHHHHHHHHhccCC--ce------EEEE-EEe------
Confidence 99999999999999999998764321 2689999999999999999999887532 11 1111 111
Q ss_pred cchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHH
Q 013425 370 YVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 411 (443)
Q Consensus 370 yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~ 411 (443)
+.||+|||+ .|.+++.+.+.+
T Consensus 191 --------------------~~v~~CGP~-~m~~~~~~~~~~ 211 (220)
T cd06197 191 --------------------SEVYLCGPP-ALEKAVLEWLEG 211 (220)
T ss_pred --------------------ccEEEECcH-HHHHHHHHHhhh
Confidence 169999998 999998877664
No 69
>PLN02252 nitrate reductase [NADPH]
Probab=99.85 E-value=2.4e-21 Score=215.36 Aligned_cols=191 Identities=18% Similarity=0.148 Sum_probs=141.0
Q ss_pred CCHHHHHHhcC---CCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCCCC
Q 013425 206 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 282 (443)
Q Consensus 206 ~p~~~ll~~lp---~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~ 282 (443)
.|+|++...++ ....|+||++|.+.. .+.++|+|+++......+....|.+|+||.++++ |+.|.|.+|.|.|.
T Consensus 666 ~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~v--Gd~V~V~GP~G~f~ 742 (888)
T PLN02252 666 PVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPI--GDTIDVKGPLGHIE 742 (888)
T ss_pred CCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCC--CCEEEEecCcccee
Confidence 36777655543 235799999999854 5789999987522111112246999999999999 99999999998764
Q ss_pred --------CC-C--CCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcC-CCcc
Q 013425 283 --------RP-P--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFS 350 (443)
Q Consensus 283 --------lp-~--~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~ 350 (443)
++ . ..++++|||+|||||||++++++....... ..++.||||+|+.+|++|++||+++.+.+ +++
T Consensus 743 y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~d--~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~- 819 (888)
T PLN02252 743 YAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPED--KTEMSLVYANRTEDDILLREELDRWAAEHPDRL- 819 (888)
T ss_pred ecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccCC--CCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCE-
Confidence 33 1 247999999999999999999998764321 26899999999999999999999999876 578
Q ss_pred ccCCCeEEEEEccCC-C----CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHH-HHHHHHH
Q 013425 351 EAKGGGFYVAFSRKQ-P----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSD-VWSTFEE 411 (443)
Q Consensus 351 ~~~~~~~~~a~Sr~~-~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~-V~~~L~~ 411 (443)
+++.++|++. + .+++|++.+.+.. ......+..+|+|||+ .|.+. +...|.+
T Consensus 820 -----~v~~vls~~~~~~w~g~~GrV~~~ll~~~---l~~~~~~~~vyiCGPp-~Mi~~av~~~L~~ 877 (888)
T PLN02252 820 -----KVWYVVSQVKREGWKYSVGRVTEAMLREH---LPEGGDETLALMCGPP-PMIEFACQPNLEK 877 (888)
T ss_pred -----EEEEEecCCCcCCCCCcCCcCCHHHHHHh---cccCCCCeEEEEeCCH-HHHHHHHHHHHHH
Confidence 8888898853 1 3567766443221 1111236789999999 99874 6666654
No 70
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.84 E-value=2.5e-20 Score=181.12 Aligned_cols=160 Identities=19% Similarity=0.221 Sum_probs=134.4
Q ss_pred CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCCCCCC-CCCCCeEEEeCC
Q 013425 218 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PPSVPLILIGPG 296 (443)
Q Consensus 218 ~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp-~~~~piImIa~G 296 (443)
..-|+||-.|++.. .+.++|.|++ ...|.+|.||.+|++ ||+|.+++|.|.|.++ ...+.+.|||+|
T Consensus 98 ~vvRpYTPvs~~~~-~g~~~l~VK~---------Y~~G~mS~~l~~Lki--Gd~ve~rGP~G~~~~~~~~~~~l~miAgG 165 (286)
T KOG0534|consen 98 LVVRPYTPVSLDDD-KGYFDLVVKV---------YPKGKMSQHLDSLKI--GDTVEFRGPIGEFKYDPQKAKHLGMIAGG 165 (286)
T ss_pred EEEEecCCccCccc-cceEEEEEEe---------ccCCcccHHHhcCCC--CCEEEEecCccceEecCCCcceEEEEecc
Confidence 35899999999865 6899999954 567999999999999 9999999999998887 667899999999
Q ss_pred ccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCC-CccccCCCeEEEEEccCCC----Ccccc
Q 013425 297 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFYVAFSRKQP----QKVYV 371 (443)
Q Consensus 297 TGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~~~a~Sr~~~----~k~yV 371 (443)
||||||..++++......+ ..+++|+|.+++.+|.++++||+.++++++ .+ ++..+.+.++. .++||
T Consensus 166 tGItPmlqii~~il~~~~d--~tki~lly~N~te~DILlr~eL~~la~~~p~rf------~~~y~v~~~~~~w~~~~g~I 237 (286)
T KOG0534|consen 166 TGITPMLQLIRAILKDPED--TTKISLLYANKTEDDILLREELEELASKYPERF------KVWYVVDQPPEIWDGSVGFI 237 (286)
T ss_pred cchhhHHHHHHHHhcCCCC--CcEEEEEEecCCccccchHHHHHHHHhhCcceE------EEEEEEcCCcccccCccCcc
Confidence 9999999999999876542 378999999999999999999999999887 78 88888888773 46777
Q ss_pred hhhHHHcHHHHHHhhcC----CCEEEEeCCCCchHHH
Q 013425 372 QHKMLEQSQRIWNLLLS----KASIYVAGSATKMPSD 404 (443)
Q Consensus 372 qd~l~~~~~~l~~~l~~----~~~iyvCG~~~~M~~~ 404 (443)
..-+ +.+.+.. ...++||||+ +|.+.
T Consensus 238 t~~~------i~~~l~~~~~~~~~~liCGPp-~m~~~ 267 (286)
T KOG0534|consen 238 TKDL------IKEHLPPPKEGETLVLICGPP-PMING 267 (286)
T ss_pred CHHH------HHhhCCCCCCCCeEEEEECCH-HHHhH
Confidence 6433 2223332 4789999999 99874
No 71
>PRK05802 hypothetical protein; Provisional
Probab=99.84 E-value=7.7e-21 Score=190.28 Aligned_cols=168 Identities=13% Similarity=0.083 Sum_probs=127.5
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecC--C
Q 013425 206 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG--S 280 (443)
Q Consensus 206 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g--~ 280 (443)
.||||+...++. ...|+|||+|++.. .+.++|+|++ .|..|++|.++++ |++|.+.+|.| .
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~-----------~G~~T~~L~~l~~--Gd~l~v~GP~GnG~ 161 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEI-----------RGVKTKKIAKLNK--GDEILLRGPYWNGI 161 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEe-----------cChhHHHHhcCCC--CCEEEEeCCCCcCc
Confidence 589988776643 34699999999854 5889999943 5899999999999 99999999985 4
Q ss_pred CCCC----CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCe
Q 013425 281 LPRP----PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGG 356 (443)
Q Consensus 281 F~lp----~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~ 356 (443)
|.++ ....++++||+|+||||+++++++...+. .+++|+||.|+++|.+|+++|+++... + .
T Consensus 162 F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~-----~~v~li~g~r~~~~~~~~~el~~~~~~---~------~ 227 (320)
T PRK05802 162 LGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG-----NKIIVIIDKGPFKNNFIKEYLELYNIE---I------I 227 (320)
T ss_pred CCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC-----CcEEEEEeCCCHHHHHHHHHHHHhhCc---e------E
Confidence 7653 23468999999999999999999887653 479999999999999999999998654 1 1
Q ss_pred EEEEEccCCC----CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 357 FYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 357 ~~~a~Sr~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
+..... +.. .+++|++++.+. +...||+|||. .|.+.|.+.+.+.
T Consensus 228 ~~~~~d-dG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP~-~M~k~v~~~l~~~ 276 (320)
T PRK05802 228 ELNLLD-DGELSEEGKDILKEIIKKE---------DINLIHCGGSD-ILHYKIIEYLDKL 276 (320)
T ss_pred EEEecc-cCCCCccccchHHHHhcCC---------CCCEEEEECCH-HHHHHHHHHHhhh
Confidence 111112 211 133444444321 23679999998 9999999888764
No 72
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.83 E-value=1.5e-20 Score=216.42 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=140.9
Q ss_pred CCCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecC--
Q 013425 205 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-- 279 (443)
Q Consensus 205 ~~p~~~ll~~lp--~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g-- 279 (443)
..|+||+...++ . ...|+|||+|.|. ..+.++|+|+ ...|.+|.||.++++ |++|.+.+|.|
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr----------~~~G~~S~~L~~l~~--Gd~v~v~gp~G~~ 1014 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILAR----------GDKGTLKEWISALRP--GDSVEMKACGGLR 1014 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEE----------cCCChhHHHHhhCCC--CCEEEEeCCcCcc
Confidence 368888776653 2 2469999999995 3578999883 246999999999999 99999998654
Q ss_pred --------CCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCC-Cc
Q 013425 280 --------SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VF 349 (443)
Q Consensus 280 --------~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l 349 (443)
.|.++ ...+|+||||+|||||||++++++...+.......+++||||+|+.+|++|++||++|.+.++ +|
T Consensus 1015 ~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f 1094 (1167)
T PTZ00306 1015 IERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKF 1094 (1167)
T ss_pred ccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCE
Confidence 45565 556899999999999999999998876431001258999999999999999999999988765 58
Q ss_pred cccCCCeEEEEEccCCC----CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 350 SEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 350 ~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
+++.++|++++ ..++|++.+.+. +......+..+|+|||+ .|.+++.+.|.+.
T Consensus 1095 ------~~~~~ls~~~~~w~~~~G~i~~~~l~~---~l~~~~~~~~vyiCGP~-~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1095 ------KCHFVLNNPPEGWTDGVGFVDRALLQS---ALQPPSKDLLVAICGPP-VMQRAVKADLLAL 1151 (1167)
T ss_pred ------EEEEEECCCCcccCCCCCCCCHHHHHH---hcCCCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence 89999997543 356776543221 11111236789999999 9999999887664
No 73
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.5e-20 Score=181.68 Aligned_cols=174 Identities=17% Similarity=0.222 Sum_probs=136.5
Q ss_pred CCHHHHHHhcCC----CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEeecCC
Q 013425 206 MPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS 280 (443)
Q Consensus 206 ~p~~~ll~~lp~----~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~ 280 (443)
-+||+....++. ..|.+||||++... .++++.| +..|..|.-|. ++++ |+++.+.+|+|.
T Consensus 244 qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~--sel~FsI-----------K~LGD~Tk~l~dnLk~--G~k~~vdGPYG~ 308 (438)
T COG4097 244 QAGQFAFLKIEIEEFRMRPHPFTIACSHEG--SELRFSI-----------KALGDFTKTLKDNLKV--GTKLEVDGPYGK 308 (438)
T ss_pred cCCceEEEEeccccccCCCCCeeeeeCCCC--ceEEEEe-----------hhhhhhhHHHHHhccC--CceEEEecCcce
Confidence 467776555554 35999999999753 5788888 35699999998 5999 999999999999
Q ss_pred CCCCCCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEE
Q 013425 281 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 360 (443)
Q Consensus 281 F~lp~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 360 (443)
|........-|.||+|+|||||+|+++....+... .++.|||.||+.+|.+|.+||+++.+.++++ .++..
T Consensus 309 F~~~~g~~~QVWIAGGIGITPFis~l~~l~~~~s~---~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~------~lHii 379 (438)
T COG4097 309 FDFERGLNTQVWIAGGIGITPFISMLFTLAERKSD---PPVHLFYCSRNWEEALYAEELRALAQKLPNV------VLHII 379 (438)
T ss_pred eecccCCcccEEEecCcCcchHHHHHHhhcccccC---CceEEEEEecCCchhHHHHHHHHHHhcCCCe------EEEEe
Confidence 99873333499999999999999999998875555 8999999999999999999999999965777 77774
Q ss_pred EccCCCCcccch-hhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 361 FSRKQPQKVYVQ-HKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 361 ~Sr~~~~k~yVq-d~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
-|. ..+|+. +.++.+.+. .....||+|||. +|.++++..|++.
T Consensus 380 DSs---~~g~l~~e~ler~~~~-----~~~~sv~fCGP~-~m~dsL~r~l~~~ 423 (438)
T COG4097 380 DSS---KDGYLDQEDLERYPDR-----PRTRSVFFCGPI-KMMDSLRRDLKKQ 423 (438)
T ss_pred cCC---CCCccCHHHhhccccc-----cCcceEEEEcCH-HHHHHHHHHHHHc
Confidence 443 355663 333333111 124589999998 9999999888775
No 74
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.80 E-value=1.4e-19 Score=200.71 Aligned_cols=170 Identities=18% Similarity=0.207 Sum_probs=133.5
Q ss_pred CCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEE-EEEeecCCCCC
Q 013425 206 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLPR 283 (443)
Q Consensus 206 ~p~~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~i~~~~g~F~l 283 (443)
.||||+...++.. .+|+|||+|.+.. .+.++|+|++ .|..|.+|+++++ |+.| .+.+|.|.|.+
T Consensus 29 ~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~-----------vG~~T~~L~~l~~--Gd~v~~v~GP~G~~~~ 94 (752)
T PRK12778 29 KPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQE-----------VGLSTTKLCELNE--GDYITDVVGPLGNPSE 94 (752)
T ss_pred CCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEE-----------cCchHHHHhcCCC--CCEeCeEeCCCCCCcc
Confidence 5899988777643 4689999999853 5789999954 3899999999999 9999 79999998876
Q ss_pred CCCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEcc
Q 013425 284 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 363 (443)
Q Consensus 284 p~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 363 (443)
+....+++|||+|+||||+++++++....+ .++.+|||.|+.+|++|.+||+++... + .++ +.
T Consensus 95 ~~~~~~~llvaGG~GiaPl~~l~~~l~~~~-----~~v~l~~g~r~~~~l~~~~el~~~~~~---~--------~~~-t~ 157 (752)
T PRK12778 95 IENYGTVVCAGGGVGVAPMLPIVKALKAAG-----NRVITILGGRSKELIILEDEMRESSDE---V--------IIM-TD 157 (752)
T ss_pred CCCCCeEEEEECCEeHHHHHHHHHHHHHCC-----CeEEEEeccCCHHHhhhHHHHHhhcCe---E--------EEE-EC
Confidence 633479999999999999999999887653 579999999999999999999988643 2 222 22
Q ss_pred CC--CCcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHH
Q 013425 364 KQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 411 (443)
Q Consensus 364 ~~--~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~ 411 (443)
+. ..+++|++.+.+.... ..+...||+|||+ .|.+.+.+.+.+
T Consensus 158 dg~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP~-~M~~~v~~~l~~ 202 (752)
T PRK12778 158 DGSYGRKGLVTDGLEEVIKR----ETKVDKVFAIGPA-IMMKFVCLLTKK 202 (752)
T ss_pred CCCCCCcccHHHHHHHHhhc----CCCCCEEEEECCH-HHHHHHHHHHHH
Confidence 22 2467888876543211 1123579999998 999999987765
No 75
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.78 E-value=3.7e-19 Score=170.79 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=113.1
Q ss_pred CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccC-CcccccccCCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCC
Q 013425 218 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPG 296 (443)
Q Consensus 218 ~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~-G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piImIa~G 296 (443)
...|+|||+|.+.. .++++|.|.+ ... |.+|+||.++++ ||+|.+.+|.|.|.++....+++|||+|
T Consensus 62 ~~~R~YSi~~~~~~-~~~l~~~v~~---------~~~~G~~s~~l~~l~~--Gd~v~v~gP~G~~~~~~~~~~~vlia~G 129 (235)
T cd06193 62 PVMRTYTVRRFDPE-AGELDIDFVL---------HGDEGPASRWAASAQP--GDTLGIAGPGGSFLPPPDADWYLLAGDE 129 (235)
T ss_pred CcCcccceeEEcCC-CCEEEEEEEe---------CCCCCchHHHHhhCCC--CCEEEEECCCCCCCCCCCcceEEEEecc
Confidence 34699999998743 5889999853 234 899999999999 9999999999999887556799999999
Q ss_pred ccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEccCCCCcccchhhHH
Q 013425 297 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKML 376 (443)
Q Consensus 297 TGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~ 376 (443)
|||||+++++++.... .++.++||+|+++|.++.+++ .++ +++.+.+++.. .......+.
T Consensus 130 tGi~p~~~il~~~~~~------~~~~~~~~~~~~~d~~~l~~~-------~~~------~~~~~~~~~~~-~~~~~~~~~ 189 (235)
T cd06193 130 TALPAIAAILEELPAD------ARGTALIEVPDAADEQPLPAP-------AGV------EVTWLHRGGAE-AGELALLAV 189 (235)
T ss_pred chHHHHHHHHHhCCCC------CeEEEEEEECCHHHccccCCC-------CCc------EEEEEeCCCCC-cchhHHHHH
Confidence 9999999999976532 579999999998765433221 345 56665554332 211111000
Q ss_pred HcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHH
Q 013425 377 EQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 411 (443)
Q Consensus 377 ~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~ 411 (443)
.......++..+|+||++ .|++.+++.|.+
T Consensus 190 ----~~~~~~~~~~~vyicGp~-~mv~~v~~~l~~ 219 (235)
T cd06193 190 ----RALAPPAGDGYVWIAGEA-GAVRALRRHLRE 219 (235)
T ss_pred ----hcccCCCCCeEEEEEccH-HHHHHHHHHHHH
Confidence 000011236799999998 999998876654
No 76
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.77 E-value=5.9e-19 Score=165.90 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=120.4
Q ss_pred CCHHHHHHhcCCC----CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCC------CCCCcEEEEE
Q 013425 206 MPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD------PQQGIYIPAW 275 (443)
Q Consensus 206 ~p~~~ll~~lp~~----~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~------~~~G~~v~i~ 275 (443)
.|||++...+|.. ..|+|||+|.+....+.++|+|+. ..|..|.++..+. . |+.+.+.
T Consensus 26 ~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~----------~~G~~t~~~~~~~~~~~~~~--~~~v~v~ 93 (210)
T cd06186 26 KPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRA----------KKGFTTRLLRKALKSPGGGV--SLKVLVE 93 (210)
T ss_pred CCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEe----------cCChHHHHHHHHHhCcCCCc--eeEEEEE
Confidence 5899988887754 689999999986435899999943 3388888887775 6 9999999
Q ss_pred eecCCCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCC-CCCCEEEEEeecCCcc-ccCHHHHHHhhhcCCCcccc
Q 013425 276 FQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNEDD-FLYRELWLSHSLNDGVFSEA 352 (443)
Q Consensus 276 ~~~g~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~L~~G~R~~~d-~ly~~el~~~~~~~g~l~~~ 352 (443)
+|.|.|..+ ....++||||+||||||+++++++........ ...++.|+|++|+.+| ..|.++|.+..+. ....
T Consensus 94 GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~~~~~~~~~l~~~~~~-~~~~-- 170 (210)
T cd06186 94 GPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLEWFLDELRAAQEL-EVDG-- 170 (210)
T ss_pred CCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHHHhHHHHHHHHhhhhc-cCCc--
Confidence 999988745 55689999999999999999999988764200 1278999999999997 4799999851111 1100
Q ss_pred CCCeEEEEEccCCCCcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHH
Q 013425 353 KGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 411 (443)
Q Consensus 353 ~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~ 411 (443)
++.+.+++ +|+|||+ .|.++++....+
T Consensus 171 ---~~~i~~T~----------------------------v~~CGp~-~~~~~~~~~~~~ 197 (210)
T cd06186 171 ---EIEIYVTR----------------------------VVVCGPP-GLVDDVRNAVAK 197 (210)
T ss_pred ---eEEEEEee----------------------------EEEECch-hhccHHHHHHhh
Confidence 12222222 9999998 999999977766
No 77
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.77 E-value=1.5e-18 Score=145.96 Aligned_cols=104 Identities=23% Similarity=0.333 Sum_probs=81.9
Q ss_pred EEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCC-ccccCCCeEEEEEccCCC----
Q 013425 292 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGV-FSEAKGGGFYVAFSRKQP---- 366 (443)
Q Consensus 292 mIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~-l~~~~~~~~~~a~Sr~~~---- 366 (443)
|||+|||||||+|++++....... ++++||||+|+.+|++|+++|+++.+.+++ + +++.+ ++...
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~------~~~~~-~~~~~~~~~ 70 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERNDN---RKVTLFYGARTPEDLLFRDELEALAQEYPNRF------HVVYV-SSPDDGWDG 70 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTCT---SEEEEEEEESSGGGSTTHHHHHHHHHHSTTCE------EEEEE-TTTTSSTTS
T ss_pred CeecceeHHHHHHHHHHHHHhCCC---CCEEEEEEEcccccccchhHHHHHHhhccccc------ccccc-cccccccCC
Confidence 799999999999999999987544 899999999999999999999999987443 5 44433 44333
Q ss_pred CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHH
Q 013425 367 QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWS 407 (443)
Q Consensus 367 ~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~ 407 (443)
.++||++.+.+.... ......++.||||||+ .|.++|++
T Consensus 71 ~~g~v~~~~~~~~~~-~~~~~~~~~v~iCGp~-~m~~~v~~ 109 (109)
T PF00175_consen 71 FKGRVTDLLLEDLLP-EKIDPDDTHVYICGPP-PMMKAVRK 109 (109)
T ss_dssp EESSHHHHHHHHHHH-HHHCTTTEEEEEEEEH-HHHHHHHH
T ss_pred ceeehhHHHHHhhcc-cccCCCCCEEEEECCH-HHHHHhcC
Confidence 378999988655333 2233458999999998 99998874
No 78
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.75 E-value=5.7e-18 Score=190.58 Aligned_cols=181 Identities=11% Similarity=0.020 Sum_probs=131.3
Q ss_pred CCHHHHHHhcC-CCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEE-EEeecCCCC-
Q 013425 206 MPIDWLVQLVP-PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP-AWFQKGSLP- 282 (443)
Q Consensus 206 ~p~~~ll~~lp-~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~-i~~~~g~F~- 282 (443)
.||||+...++ +...|+|||+|.+.. .+.++|+|++ .|..|.+|.++++ |+.|. |.+|.|.|.
T Consensus 678 ~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~-----------vG~~T~~L~~lk~--Gd~l~~I~GPlG~~f~ 743 (944)
T PRK12779 678 QAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQG-----------MGTSSLEINRMAI--GDAFSGIAGPLGRASE 743 (944)
T ss_pred CCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEe-----------eccHHHHHhcCCC--cCEEeeeecCCCCCcC
Confidence 58999877653 334599999998743 5789999843 3888999999999 99995 999999764
Q ss_pred CC--CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHH---HHHhhhcCCCccccCCCeE
Q 013425 283 RP--PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYREL---WLSHSLNDGVFSEAKGGGF 357 (443)
Q Consensus 283 lp--~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~e---l~~~~~~~g~l~~~~~~~~ 357 (443)
++ ...++++|||+|+||||+++++++....+ .+++|+||+|+++|++|.++ |++|.+.++..- ++
T Consensus 744 ~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g-----~~V~li~G~Rs~edl~~~del~~L~~la~~~~~~~-----~v 813 (944)
T PRK12779 744 LHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG-----NHVTLISGFRAKEFLFWTGDDERVGKLKAEFGDQL-----DV 813 (944)
T ss_pred CccccCCCcEEEEEccEeHHHHHHHHHHHHHCC-----CCEEEEEEeCCHHHhhhHHHHHHHHHHHHHcCCCe-----EE
Confidence 43 23479999999999999999999876643 57999999999988888766 455655545321 44
Q ss_pred EEEEccCC--CCcccchhhHHHcHHHHHHhhc-CCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 358 YVAFSRKQ--PQKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 358 ~~a~Sr~~--~~k~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
+++ +.+. ..+++|++.+.+........-. ....||+|||+ .|.+.|.+.|.+.
T Consensus 814 ~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP~-~Mmkav~~~l~~~ 869 (944)
T PRK12779 814 IYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGPP-LMMRAVSDLTKPY 869 (944)
T ss_pred EEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECCH-HHHHHHHHHHHHc
Confidence 444 3332 2468888876543221100000 13579999999 9999999877553
No 79
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.71 E-value=2.9e-17 Score=186.26 Aligned_cols=169 Identities=13% Similarity=0.125 Sum_probs=129.1
Q ss_pred CCHHHHHHhcCC-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccc-cCCCCCCCcEE-EEEeecCCCC
Q 013425 206 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQGIYI-PAWFQKGSLP 282 (443)
Q Consensus 206 ~p~~~ll~~lp~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~~~G~~v-~i~~~~g~F~ 282 (443)
.||||++..++. ..+|+|||++.+.. .+.++|.|.+ .|..|.|| .++++ ||.| .+.+|.|.|.
T Consensus 29 ~PGQFV~l~~~~~~errplSIa~~~~~-~g~i~l~vk~-----------vG~~T~~L~~~lk~--Gd~l~~v~GPlG~~~ 94 (1006)
T PRK12775 29 EPGHFVMLRLYEGAERIPLTVADFDRK-KGTITMVVQA-----------LGKTTREMMTKFKA--GDTFEDFVGPLGLPQ 94 (1006)
T ss_pred CCCeeEEEEeCCCCeeEEEEecCcCCC-CCEEEEEEEe-----------cCcHHHHHHhcCCC--CCEEeeeecCCCCCC
Confidence 599998887753 34699999998743 5788888843 48999998 58999 9999 7999999765
Q ss_pred CCCCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEc
Q 013425 283 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 362 (443)
Q Consensus 283 lp~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 362 (443)
......+++|||+|+||||+++++++....+ .+++++||+|++++++|.+||+++... ++++ +
T Consensus 95 ~~~~~~~vllVaGGiGIAPl~s~~r~l~~~g-----~~v~li~g~R~~~~l~~~del~~~~~~-----------~~v~-t 157 (1006)
T PRK12775 95 HIDKAGHVVLVGGGLGVAPVYPQLRAFKEAG-----ARTTGIIGFRNKDLVFWEDKFGKYCDD-----------LIVC-T 157 (1006)
T ss_pred CCCCCCeEEEEEEhHHHHHHHHHHHHHHhCC-----CcEEEEEeCCChHHcccHHHHHhhcCc-----------EEEE-E
Confidence 4433478999999999999999999876653 469999999999999999999876532 2222 2
Q ss_pred cCCC--CcccchhhHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHH
Q 013425 363 RKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 411 (443)
Q Consensus 363 r~~~--~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~ 411 (443)
.+.. .+++|++.+.+.... .....+|+|||+ .|.+.|.+.+++
T Consensus 158 ddgs~G~~G~vt~~l~~~l~~-----~~~d~vy~CGP~-~Mm~av~~~~~~ 202 (1006)
T PRK12775 158 DDGSYGKPGFVTAALKEVCEK-----DKPDLVVAIGPL-PMMNACVETTRP 202 (1006)
T ss_pred CCCCCCCCCChHHHHHHHhcc-----CCCCEEEEECCH-HHHHHHHHHHHH
Confidence 2221 467888877543211 123579999999 999999987764
No 80
>PLN02292 ferric-chelate reductase
Probab=99.55 E-value=2.4e-14 Score=155.41 Aligned_cols=173 Identities=18% Similarity=0.206 Sum_probs=122.5
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccC-CCCCCCc-----EEEEEe
Q 013425 206 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGI-----YIPAWF 276 (443)
Q Consensus 206 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~-----~v~i~~ 276 (443)
.|||++...+|. .+.|+|||+|+|...++.++++|+ ..|..|++|.+ ++. |+ +|.+.+
T Consensus 353 ~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK-----------~~G~~T~~L~~~l~~--gd~i~~~~V~VeG 419 (702)
T PLN02292 353 SPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIK-----------SQGKWSTKLYHMLSS--SDQIDRLAVSVEG 419 (702)
T ss_pred CCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEE-----------cCCchhHHHHHhCCC--CCccccceEEEEC
Confidence 488887776664 478999999998544688999984 34778888874 566 77 467999
Q ss_pred ecCCCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCC--CCCCEEEEEeecCCccccCHHHHHH-------hhhcC
Q 013425 277 QKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLS-------HSLND 346 (443)
Q Consensus 277 ~~g~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~-------~~~~~ 346 (443)
|.|.+..+ ....+++|||+|+||||+++++++..++.... ...++.|+|++|+.+|..+.+++.. +++.
T Consensus 420 PYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~- 498 (702)
T PLN02292 420 PYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSF- 498 (702)
T ss_pred CccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhc-
Confidence 99987655 44579999999999999999999987653211 1258999999999999988765543 2333
Q ss_pred CCccccCCCeEEEEEccCCCCcc-cchhhHHHcHHHHHHhhc-----CCCEEEEeCCCCchH
Q 013425 347 GVFSEAKGGGFYVAFSRKQPQKV-YVQHKMLEQSQRIWNLLL-----SKASIYVAGSATKMP 402 (443)
Q Consensus 347 g~l~~~~~~~~~~a~Sr~~~~k~-yVqd~l~~~~~~l~~~l~-----~~~~iyvCG~~~~M~ 402 (443)
.++ ++.+-++|+.+.+. |-++ ..+.+.+.+. +...+.+|||++.+-
T Consensus 499 ~~~------~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~w 550 (702)
T PLN02292 499 IDI------QIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPNSWLW 550 (702)
T ss_pred CCc------eEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCCchHH
Confidence 456 77888888766321 1121 2222222221 368899999986553
No 81
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.54 E-value=2.5e-14 Score=155.57 Aligned_cols=176 Identities=18% Similarity=0.167 Sum_probs=125.5
Q ss_pred CCHHHHHHhcCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-----CCCCCCC------cE
Q 013425 206 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-----GLDPQQG------IY 271 (443)
Q Consensus 206 ~p~~~ll~~lp~~---~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-----~l~~~~G------~~ 271 (443)
.|||++...+|.. +.|+|||+|+|..+++.++++|++ .|-.|+.|. .+.+ | .+
T Consensus 340 ~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~-----------~gG~T~~L~~~i~~~l~~--g~~~~~~~~ 406 (722)
T PLN02844 340 APTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKC-----------EGGWTNSLYNKIQAELDS--ETNQMNCIP 406 (722)
T ss_pred CCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEe-----------CCCchHHHHHHHHhhccC--CCCcccceE
Confidence 5889887777753 679999999885556789998843 243455553 2233 4 37
Q ss_pred EEEEeecCCCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCC--CCCCEEEEEeecCCccccCHHHHHH-----hh
Q 013425 272 IPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLS-----HS 343 (443)
Q Consensus 272 v~i~~~~g~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~-----~~ 343 (443)
+.+.+|.|.|..+ ....+++|||+|||||||+|++++...+.... ...++.|+|++|+.+|..|.+++.. +.
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~~ 486 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQDICLLNPISSLLLNQSS 486 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhhHHHHHHHhHHhHH
Confidence 8899999998766 44579999999999999999999988643211 1258999999999999999999863 22
Q ss_pred hcCCCccccCCCeEEEEEccCCCCcccchhhHHHc--HHHHHHhhcCCCEEEEeCCCCchH
Q 013425 344 LNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQ--SQRIWNLLLSKASIYVAGSATKMP 402 (443)
Q Consensus 344 ~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~--~~~l~~~l~~~~~iyvCG~~~~M~ 402 (443)
+. .++ +++...+|+......+++.+..- .++++ +-.+...+.+||+.+.+-
T Consensus 487 ~~-~~l------kl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~~~lw 539 (722)
T PLN02844 487 NQ-LNL------KLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLESFLW 539 (722)
T ss_pred Hh-cCc------eEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCCchHH
Confidence 32 345 78888999877555677766541 22222 212367799999975543
No 82
>PLN02631 ferric-chelate reductase
Probab=99.54 E-value=1.6e-14 Score=156.54 Aligned_cols=142 Identities=19% Similarity=0.233 Sum_probs=110.9
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccC-CCCCCCc--EEEEEeecC
Q 013425 206 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGI--YIPAWFQKG 279 (443)
Q Consensus 206 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~--~v~i~~~~g 279 (443)
.|||++...+|. .+.|+|||+|+|...++.++++|+ ..|..|++|.+ ++. .|+ +|.+.||+|
T Consensus 336 ~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK-----------~~Gg~T~~L~~~l~~-~g~~i~V~VeGPYG 403 (699)
T PLN02631 336 TPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIR-----------RQGSWTQKLYTHLSS-SIDSLEVSTEGPYG 403 (699)
T ss_pred CCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEE-----------cCChHHHHHHHhhhc-CCCeeEEEEECCCC
Confidence 578888777765 467999999998544688999983 35888999874 432 144 677889999
Q ss_pred CCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCC--CCCCEEEEEeecCCccccCHHHHHHh------hhcCCCcc
Q 013425 280 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSH------SLNDGVFS 350 (443)
Q Consensus 280 ~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~------~~~~g~l~ 350 (443)
.|..+ ....++||||+|+||||++|++++...+.... +.+++.|+||+|+.+|.+|.|||+.+ .++ -++
T Consensus 404 ~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~-~ni- 481 (699)
T PLN02631 404 PNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISR-LNL- 481 (699)
T ss_pred CCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhc-Cce-
Confidence 87766 55678999999999999999999988653221 22589999999999999999999963 233 467
Q ss_pred ccCCCeEEEEEccCCC
Q 013425 351 EAKGGGFYVAFSRKQP 366 (443)
Q Consensus 351 ~~~~~~~~~a~Sr~~~ 366 (443)
++...+||+++
T Consensus 482 -----~i~iyVTR~~~ 492 (699)
T PLN02631 482 -----RIEAYITREDK 492 (699)
T ss_pred -----EEEEEEcCCCC
Confidence 88888999765
No 83
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.17 E-value=1.1e-11 Score=117.36 Aligned_cols=175 Identities=21% Similarity=0.273 Sum_probs=110.1
Q ss_pred CCHHHHHHh--cCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCccccccc-CCCCCCCcEEEEEeecC
Q 013425 206 MPIDWLVQL--VPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG 279 (443)
Q Consensus 206 ~p~~~ll~~--lp~~---~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g 279 (443)
-|||++-.. +|.+ .-|.||.++......|.+.|.|+. ...|+.|+|++ ++++ ||.|.+..|.|
T Consensus 182 ~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~---------~A~G~VS~~~H~~~KV--GD~v~~S~PAG 250 (385)
T KOG3378|consen 182 HPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRR---------VAGGVVSNFVHDNLKV--GDIVGVSPPAG 250 (385)
T ss_pred CCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEee---------hhchhhHHHhhccccc--cceeeccCCCc
Confidence 478876332 3333 246666666554456889998854 46799999998 7999 99999999999
Q ss_pred CCCCC----CCCCCeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcC-CCccccCC
Q 013425 280 SLPRP----PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKG 354 (443)
Q Consensus 280 ~F~lp----~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~~~~~ 354 (443)
.|... +.++|+++.|+|+||+|++++++....-.++ ++ +..-++++...+ .++
T Consensus 251 ~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~~~---RP--------------~~~~~~~~~~K~k~~~----- 308 (385)
T KOG3378|consen 251 NFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLCYSS---RP--------------FKQWLEQLKLKYKENL----- 308 (385)
T ss_pred cceeehhhhccCCceEEecCCcCccccHHHHHHHHhcCCC---Cc--------------HHHHHHHHHHHHHHHH-----
Confidence 99875 5679999999999999999999987653222 11 111222221110 011
Q ss_pred CeEEEEEccCCC--CcccchhhHHH--cHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHHHHH
Q 013425 355 GGFYVAFSRKQP--QKVYVQHKMLE--QSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSK 415 (443)
Q Consensus 355 ~~~~~a~Sr~~~--~k~yVqd~l~~--~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i~~~ 415 (443)
++.--||.+.. .+.-|...+.. +.+.+.++-...++||.|||. +.++.|.+.|.++..+
T Consensus 309 -K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~~s~~DiY~~G~~-~~M~~~~~~L~~L~~~ 371 (385)
T KOG3378|consen 309 -KLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLDLSECDIYMLGPN-NYMRFVKQELVKLGVE 371 (385)
T ss_pred -HHHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcChhhCceeeeCcH-HHHHHHHHHHHHhcCC
Confidence 11111222221 12233332222 223333333448999999998 7778999888887544
No 84
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.63 E-value=8.7e-08 Score=85.62 Aligned_cols=72 Identities=15% Similarity=0.281 Sum_probs=48.8
Q ss_pred CeEEEeCCccchhHHHHHHHHHHhcCCC--CCCCEEEEEeecCCccc-cCHHHHHHhhhcC--CCccccCCCeEEEEEcc
Q 013425 289 PLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDF-LYRELWLSHSLND--GVFSEAKGGGFYVAFSR 363 (443)
Q Consensus 289 piImIa~GTGIAPfrs~lq~~~~~~~~~--~~~~~~L~~G~R~~~d~-ly~~el~~~~~~~--g~l~~~~~~~~~~a~Sr 363 (443)
.++|||||+||+|+++++++.......+ ...++.|+|-+|+.+++ .|.++|.++.... +.+ ++.+.+++
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~------~~~iyvT~ 76 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNV------EVHIYVTR 76 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSE------EEEEEETT
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccc------eEEEEEcC
Confidence 5899999999999999999988765411 44789999999999854 4675665554321 356 67777766
Q ss_pred CCC
Q 013425 364 KQP 366 (443)
Q Consensus 364 ~~~ 366 (443)
+..
T Consensus 77 ~~~ 79 (156)
T PF08030_consen 77 ESS 79 (156)
T ss_dssp ---
T ss_pred Ccc
Confidence 543
No 85
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.35 E-value=1.4e-06 Score=95.21 Aligned_cols=125 Identities=20% Similarity=0.313 Sum_probs=86.8
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccC-CC----C--CC----CcE
Q 013425 206 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LD----P--QQ----GIY 271 (443)
Q Consensus 206 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~----~--~~----G~~ 271 (443)
-|||++...+|. ++..+|||+|+| .++.+.+.|+. .|-.|.-|.+ +. + .+ .-+
T Consensus 383 ~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~-----------~g~wT~~L~~~~~~~~~~~~~~~~~~~~~ 449 (646)
T KOG0039|consen 383 KPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKA-----------LGDWTEKLRNAFSEVSQPPESDKSYPFPK 449 (646)
T ss_pred CCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEe-----------cCcHHHHHHHHHhhhcccccccccccCce
Confidence 368988777775 488999999999 46899999964 3444544431 11 1 01 447
Q ss_pred EEEEeecCCCCCC-CCCCCeEEEeCCccchhHHHHHHHHHHhcCCC-------------CCCCEEEEEeecCCcccc-CH
Q 013425 272 IPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-------------PAAPIIFFFGCRNEDDFL-YR 336 (443)
Q Consensus 272 v~i~~~~g~F~lp-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-------------~~~~~~L~~G~R~~~d~l-y~ 336 (443)
+.|.||+|.=.-+ ..-..++|||+|.|++||.|.+++.......+ ..+++..+|-||...++. +.
T Consensus 450 i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~ 529 (646)
T KOG0039|consen 450 ILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFK 529 (646)
T ss_pred EEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHHH
Confidence 8899998854333 33346799999999999999999988754321 236778888898877553 45
Q ss_pred HHHHHhh
Q 013425 337 ELWLSHS 343 (443)
Q Consensus 337 ~el~~~~ 343 (443)
+.+.+..
T Consensus 530 ~~l~~v~ 536 (646)
T KOG0039|consen 530 GLLTEVE 536 (646)
T ss_pred HHHHHHH
Confidence 5555554
No 86
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=98.33 E-value=1e-07 Score=78.66 Aligned_cols=65 Identities=23% Similarity=0.289 Sum_probs=54.6
Q ss_pred CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCCCC
Q 013425 206 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 282 (443)
Q Consensus 206 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~ 282 (443)
.|+|++...++. ...|+|||+|.+. ..+.++|+|+. .+.|..|+||.++++ ||.|.+.+|.|.|.
T Consensus 31 ~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~---------~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~ 98 (99)
T PF00970_consen 31 KPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKR---------YPNGRVSRYLHQLKP--GDEVEIRGPYGNFT 98 (99)
T ss_dssp TTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEE---------CTTSHHHHHHHTSCT--TSEEEEEEEESSEE
T ss_pred CcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEe---------ccCCHHHHHHHhCCC--CCEEEEEEcccccC
Confidence 578988877772 2469999999995 36799999954 478999999999999 99999999999985
No 87
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.30 E-value=1e-06 Score=98.58 Aligned_cols=81 Identities=14% Similarity=0.061 Sum_probs=67.7
Q ss_pred CCHHHHHHhcC-----CC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecC
Q 013425 206 MPIDWLVQLVP-----PL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG 279 (443)
Q Consensus 206 ~p~~~ll~~lp-----~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g 279 (443)
.||||+....+ .+ .||++||++.... .+.++|+|.+| |.+|.+|+++++ |+.|.+.+|.|
T Consensus 820 kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvV-----------GkgT~~Ls~l~~--Gd~v~v~GPLG 885 (1028)
T PRK06567 820 KFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEV-----------GKSTSLCKTLSE--NEKVVLMGPTG 885 (1028)
T ss_pred CCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEE-----------ChHHHHHhcCCC--CCEEEEEcccC
Confidence 49999877663 23 6789999998643 57899999765 899999999999 99999999998
Q ss_pred -CCCCCCCCCCeEEEeCCccchh
Q 013425 280 -SLPRPPPSVPLILIGPGTGCAP 301 (443)
Q Consensus 280 -~F~lp~~~~piImIa~GTGIAP 301 (443)
.|..+. ...+++||+|.|+||
T Consensus 886 ~pF~i~~-~k~vLLVgGGVGiAp 907 (1028)
T PRK06567 886 SPLEIPQ-NKKIVIVDFEVGNIG 907 (1028)
T ss_pred CCCCCCC-CCeEEEEEccccHHH
Confidence 687763 357999999999997
No 88
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.00095 Score=64.73 Aligned_cols=165 Identities=16% Similarity=0.222 Sum_probs=107.8
Q ss_pred CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCc
Q 013425 218 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT 297 (443)
Q Consensus 218 ~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piImIa~GT 297 (443)
..+|.|||.+-... .+++.|-+ |- ....|.+|.|-.+.++ ||+|.+.+|.|.+..+....-++|||=-|
T Consensus 85 ~~~R~YTiR~~d~~-~~e~~vDf--Vl------H~~~gpas~WA~~a~~--GD~l~i~GP~g~~~p~~~~~~~lLigDet 153 (265)
T COG2375 85 PPQRTYTIRAVDAA-AGELDVDF--VL------HGEGGPASRWARTAQP--GDTLTIMGPRGSLVPPEAADWYLLIGDET 153 (265)
T ss_pred CCcccceeeeeccc-ccEEEEEE--EE------cCCCCcchhhHhhCCC--CCEEEEeCCCCCCCCCCCcceEEEecccc
Confidence 46899999765321 34555444 32 2368999999999999 99999999999977776667899999999
Q ss_pred cchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEccCCCCcccchhhHHH
Q 013425 298 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLE 377 (443)
Q Consensus 298 GIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~ 377 (443)
++--+.++|++.... .+...|.-.++..|. .++. .. +.+ ++.....++.. -+.++..
T Consensus 154 AlPAIa~iLE~lp~~------~~~~a~lev~d~ad~---~~l~---~~-~~l------~~~Wl~r~~~~----~~~ll~~ 210 (265)
T COG2375 154 ALPAIARILETLPAD------TPAEAFLEVDDAADR---DELP---SP-DDL------ELEWLARDDAP----TEQLLAA 210 (265)
T ss_pred chHHHHHHHHhCCCC------CceEEEEEeCChHHh---hccC---CC-Cce------eEEEecCCCcc----chHHHHH
Confidence 998888888876543 455778888877664 2222 22 445 55554433322 1222322
Q ss_pred cHHHHHHhhcC-CCEEEEeCCCCchHHHHHHHHHHHHHHhCCCCHHH
Q 013425 378 QSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDS 423 (443)
Q Consensus 378 ~~~~l~~~l~~-~~~iyvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~ 423 (443)
...+. .+.. +.++||.|-. .|++.++ +.+.++.|++...
T Consensus 211 a~~~~--~~P~~~~~vwiagE~-~~v~~~R----k~L~~e~g~dk~~ 250 (265)
T COG2375 211 ALAQA--ALPAGDYYVWIAGEA-SAVKAIR----KFLRNERGFDKSR 250 (265)
T ss_pred HHhcc--cCCCCceEEEEeccH-HHHHHHH----HHHhhhcCCCHHH
Confidence 21110 1222 4799999997 6666555 6666666776554
No 89
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=91.51 E-value=0.11 Score=44.37 Aligned_cols=53 Identities=15% Similarity=0.269 Sum_probs=30.2
Q ss_pred CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCCCCCCCcEEEEEeecCCC
Q 013425 218 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 281 (443)
Q Consensus 218 ~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F 281 (443)
...|.|||.+.... .+++.|-|.+ ....|.+|.|..+.++ ||.|.+.+|.|.|
T Consensus 65 p~~R~YTvR~~d~~-~~~l~iDfv~--------Hg~~Gpas~WA~~A~p--Gd~v~v~gP~g~~ 117 (117)
T PF08021_consen 65 PVMRTYTVRRFDPE-TGELDIDFVL--------HGDEGPASRWARSARP--GDRVGVTGPRGSF 117 (117)
T ss_dssp -EEEEEE--EEETT---EEEEEEE----------SS--HHHHHHHH--T--T-EEEEEEEE---
T ss_pred CCCCCcCEeeEcCC-CCEEEEEEEE--------CCCCCchHHHHhhCCC--CCEEEEeCCCCCC
Confidence 46899999887532 3556655532 1234999999999999 9999999999887
No 90
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=91.06 E-value=0.035 Score=46.41 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=3.8
Q ss_pred CCHHHHHHhcCCC-----CcceeecCCCCCCCCCeEEEEEEEEEecCCCCcccCCcccccccCC-CC-----CCCcEEEE
Q 013425 206 MPIDWLVQLVPPL-----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGL-DP-----QQGIYIPA 274 (443)
Q Consensus 206 ~p~~~ll~~lp~~-----~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l-~~-----~~G~~v~i 274 (443)
-|||++...+|.+ +..+|||+|+|. ++.+.|+|+ ..|-.|.-|.+. .. ..+-+|.|
T Consensus 31 ~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik-----------~~g~~T~~L~~~~~~~~~~~~~~~~v~i 97 (105)
T PF08022_consen 31 KPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIK-----------ARGGWTKRLYEHLSESPSKQGNRLRVFI 97 (105)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred CCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEE-----------eCCCchHHHHHHHhhhcccCCCceEEEE
Confidence 5899998888754 567999999996 588999883 345566666533 11 01334555
Q ss_pred EeecC
Q 013425 275 WFQKG 279 (443)
Q Consensus 275 ~~~~g 279 (443)
.||+|
T Consensus 98 dGPYG 102 (105)
T PF08022_consen 98 DGPYG 102 (105)
T ss_dssp TSTTS
T ss_pred ECCCC
Confidence 66666
No 91
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=77.27 E-value=5.3 Score=39.29 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=37.7
Q ss_pred cce-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccC
Q 013425 45 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 89 (443)
Q Consensus 45 ~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~ 89 (443)
.+. +|++++.+|+.+...++++++|+.+ ..+.|+||.++.|.++
T Consensus 8 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~pGQ~v~l~~~ 52 (286)
T cd06208 8 PLIGKVVSNTRLTGPDAPGEVCHIVIDHG-GKLPYLEGQSIGIIPP 52 (286)
T ss_pred CeEEEEEeceeccCCCCCcceEEEEEeCC-CcccccCCceEEEECC
Confidence 445 8999999998777789999999985 5789999999999865
No 92
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=64.11 E-value=15 Score=35.21 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=31.5
Q ss_pred EEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCC
Q 013425 49 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 90 (443)
Q Consensus 49 v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N 90 (443)
++...++++.....++++|+|+.++....|+||.++.|.+++
T Consensus 3 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 3 LQARVLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred eEeeeecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 445555555443458999999987557899999999998764
No 93
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=60.96 E-value=24 Score=28.27 Aligned_cols=37 Identities=19% Similarity=0.485 Sum_probs=28.5
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecC--CCcccCCCCEEEEccC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVS--AAIEYEVGDVLEILPS 89 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~--~~~~y~~GD~l~I~p~ 89 (443)
+|++.+.++ .++++++|.+++ ....|+||.++.|.-.
T Consensus 3 ~v~~~~~~s-----~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 3 KVVEIEELS-----PDVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEES-----SSEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEeC-----CCeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 688888888 478899999883 3478999999999766
No 94
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=42.93 E-value=59 Score=27.45 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=55.4
Q ss_pred CeEEEeCCccchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCccccCHHHHHHhhhcCCCccccCCCeEEEEEccCC-CC
Q 013425 289 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ-PQ 367 (443)
Q Consensus 289 piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~-~~ 367 (443)
.++|+|=-|++--+.+++++.... .+...|+-..+.+|..+ |.. . ..+ ++........ ..
T Consensus 3 ~~ll~gDeTalPAi~~iLe~lp~~------~~~~v~iev~~~~d~~~---l~~---~-~~~------~v~wv~r~~~~~~ 63 (119)
T PF04954_consen 3 RYLLVGDETALPAIARILEALPAD------APGTVFIEVPDEADRQP---LPA---P-AGV------EVTWVPRDGPAAQ 63 (119)
T ss_dssp EEEEEEEGGGHHHHHHHHHHS-TT-------EEEEEEEESSGGG--------------TEE------EEEEEE-SS--TT
T ss_pred eEEEEeccccHHHHHHHHHhCCCC------CeEEEEEEECChHhccc---CCC---C-CCC------EEEEEeCCCCCch
Confidence 478999999999999999987432 57788888877766332 222 1 334 5555554332 11
Q ss_pred cccchhhHHHcHHHHHHhh--cCCCEEEEeCCCCchHHHHHHHHHH
Q 013425 368 KVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEE 411 (443)
Q Consensus 368 k~yVqd~l~~~~~~l~~~l--~~~~~iyvCG~~~~M~~~V~~~L~~ 411 (443)
..-+.+.++ ++. ..+.++|++|.. .|.+.+++.|++
T Consensus 64 ~~~l~~al~-------~~~~~~~~~~vW~AgE~-~~~r~lR~~l~~ 101 (119)
T PF04954_consen 64 GSALADALR-------DLPLPAGDGYVWVAGEA-SAVRALRRHLRE 101 (119)
T ss_dssp -HHHHHHHT-------TS---SS-EEEEEEEEH-HHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HhhccCCCeEEEEEecH-HHHHHHHHHHHH
Confidence 111222222 222 248899999997 888888876664
No 95
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=41.80 E-value=46 Score=30.83 Aligned_cols=38 Identities=18% Similarity=0.437 Sum_probs=30.3
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQD 91 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~ 91 (443)
+|++.+.++ .++++++|+.+ ....|+||.++.|.-.++
T Consensus 4 ~v~~~~~~~-----~~~~~~~l~~~-~~~~~~pGQ~v~l~~~~~ 41 (218)
T cd06196 4 TLLSIEPVT-----HDVKRLRFDKP-EGYDFTPGQATEVAIDKP 41 (218)
T ss_pred EEEEEEEcC-----CCeEEEEEcCC-CcCCCCCCCEEEEEeeCC
Confidence 677888777 47889999977 468999999999975543
No 96
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=40.67 E-value=58 Score=30.52 Aligned_cols=38 Identities=16% Similarity=0.382 Sum_probs=30.1
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecC-CCcccCCCCEEEEccCC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 90 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~-~~~~y~~GD~l~I~p~N 90 (443)
+|++++.+++ +++++.|+++. ....|+||.++.|..+.
T Consensus 4 ~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 4 TVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred EEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 7888888874 68899998763 35789999999998654
No 97
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=37.91 E-value=23 Score=27.57 Aligned_cols=16 Identities=19% Similarity=0.476 Sum_probs=14.8
Q ss_pred ccCCCCEEEEccCCCH
Q 013425 77 EYEVGDVLEILPSQDP 92 (443)
Q Consensus 77 ~y~~GD~l~I~p~N~~ 92 (443)
.|++||.+.|..+|+.
T Consensus 5 ~~~~GD~VyViYrNPH 20 (75)
T PF11132_consen 5 PYHAGDIVYVIYRNPH 20 (75)
T ss_pred ccCCCCEEEEEEcCCC
Confidence 6999999999999984
No 98
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=37.79 E-value=56 Score=30.53 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=29.9
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCC-cccCCCCEEEEccCC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAA-IEYEVGDVLEILPSQ 90 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~-~~y~~GD~l~I~p~N 90 (443)
+|++++.++ .+++.++|+.++.. ..|+||.++.|..++
T Consensus 5 ~v~~~~~~~-----~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (235)
T cd06217 5 RVTEIIQET-----PTVKTFRLAVPDGVPPPFLAGQHVDLRLTA 43 (235)
T ss_pred EEEEEEecC-----CCeEEEEEECCCCCcCCcCCcCeEEEEEec
Confidence 677888776 47889999987322 789999999998653
No 99
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=36.08 E-value=97 Score=23.34 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=21.2
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCEEE
Q 013425 414 SKEGEASRDSAANWLKALQRAGRYHV 439 (443)
Q Consensus 414 ~~~~~~~~~~a~~~l~~l~~~~Ry~~ 439 (443)
++..+++..+|+.+|..|+++|+...
T Consensus 22 A~~~gls~~~aR~yL~~Le~eG~V~~ 47 (62)
T PF04703_consen 22 ADALGLSIYQARYYLEKLEKEGKVER 47 (62)
T ss_dssp HHHHTS-HHHHHHHHHHHHHCTSEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 34568899999999999999998764
No 100
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=35.67 E-value=46 Score=27.89 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=31.1
Q ss_pred CCCCchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 013425 396 GSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGR 436 (443)
Q Consensus 396 G~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~R 436 (443)
|.. ++..+=.+-|.+-+.+.|.++.++|.+|+..|.++.+
T Consensus 17 G~~-a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k 56 (108)
T COG3937 17 GLA-AETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAK 56 (108)
T ss_pred cHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 554 5666656666666778899999999999999988765
No 101
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=35.00 E-value=84 Score=29.72 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=30.6
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCC-C-cccCCCCEEEEccCCC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSA-A-IEYEVGDVLEILPSQD 91 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~-~-~~y~~GD~l~I~p~N~ 91 (443)
+|++++.++ .++++++|+.+.. . ..|+||+++.|...++
T Consensus 10 ~v~~~~~~s-----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~ 50 (247)
T cd06184 10 VVARKVAES-----EDITSFYLEPADGGPLPPFLPGQYLSVRVKLP 50 (247)
T ss_pred EEEEEEEcC-----CCeEEEEEEeCCCCcCCCCCCCCEEEEEEecC
Confidence 788888877 4688999998733 2 6899999999986543
No 102
>KOG4723 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.84 E-value=55 Score=30.84 Aligned_cols=116 Identities=8% Similarity=0.034 Sum_probs=66.0
Q ss_pred CCCEEEEEeecCCc-cccCHHHHHHhhhcCCCccccCCCeEEEEEccCCCCcccchhhHHHcHHHHHHhhcCCCEEEEeC
Q 013425 318 AAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAG 396 (443)
Q Consensus 318 ~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG 396 (443)
.++.+|+-+||-.. .|++..-|..+.+. . -+ ..++||++.=.+.-.+ +++.+-.+.-.-.+|--+|+=|
T Consensus 18 qgkltLl~d~~eT~gsFl~H~~l~~~Lka-n-~~-----~cFlaf~k~fshy~i~---~rKlG~~l~t~k~rgqlvF~dg 87 (248)
T KOG4723|consen 18 QGKLTLLLDTRETPGSFLFHYYLYHALKA-N-ES-----TCFLAFSKTFSHYAIS---MRKLGMDLKTKKNRGQLVFIDG 87 (248)
T ss_pred CccEEEEeecccCCceeeHHHHHHHHHhc-C-Cc-----EEEEEeecchhHHHHH---HHHhCCceeecccCCcEEEEhh
Confidence 38999999999777 99999999888876 2 33 6899999875421111 1111111110111256677776
Q ss_pred CCCchHHHHHHHHH------HHHHHhCCCCHHHHHHHHHHHHHcCCEEEeecC
Q 013425 397 SATKMPSDVWSTFE------EIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 443 (443)
Q Consensus 397 ~~~~M~~~V~~~L~------~i~~~~~~~~~~~a~~~l~~l~~~~Ry~~dvWs 443 (443)
=.......+.+.-+ +.+...++-.-.-.+++..+.++.-+..+|+|+
T Consensus 88 l~~~~~~i~~q~~kq~~~t~~~~~a~~~~ni~~v~e~~rE~~~~v~~~e~i~~ 140 (248)
T KOG4723|consen 88 LSMLFAPISKQSKKQAPETKNHIKAVFAPNIQCVEENDREFENSVIIIEDIDI 140 (248)
T ss_pred hhhhhCccchhhhhcCchhHHHHHhhcCcchhHHHHHHHHHhhheeeeeeeec
Confidence 53111112222211 112222222334456677777788899999995
No 103
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.17 E-value=1.2e+02 Score=29.10 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=38.5
Q ss_pred EEEEccCCC-----CcccchhhHHHcHHHHHHhh-cCCCEEEEeCCCCchHHHHHHHHHHHHHHh
Q 013425 358 YVAFSRKQP-----QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKE 416 (443)
Q Consensus 358 ~~a~Sr~~~-----~k~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~V~~~L~~i~~~~ 416 (443)
..|||.+.- +..++.+++.+..+...+.+ ..+..|-++|+...+++++.+++.++....
T Consensus 53 vYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T 117 (233)
T PRK14841 53 AFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKT 117 (233)
T ss_pred EEeeeHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHh
Confidence 566776543 33455555555443333333 348889999998888888888888877554
No 104
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=31.30 E-value=93 Score=29.01 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=29.6
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 90 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N 90 (443)
+|++.+.+| .+++.++|..+ ....|+||.++.|..+.
T Consensus 4 ~v~~~~~~t-----~~~~~~~l~~~-~~~~~~pGQ~~~l~~~~ 40 (227)
T cd06213 4 TIVAQERLT-----HDIVRLTVQLD-RPIAYKAGQYAELTLPG 40 (227)
T ss_pred EEEEEeecC-----CCEEEEEEecC-CCCCcCCCCEEEEEeCC
Confidence 677788877 37889999875 46789999999998754
No 105
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=29.67 E-value=97 Score=28.81 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=28.9
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCC-cccCCCCEEEEccC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAA-IEYEVGDVLEILPS 89 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~-~~y~~GD~l~I~p~ 89 (443)
+|++.+.++ .++++++|+.+... ..|+||.++.|.-+
T Consensus 2 ~v~~~~~~t-----~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~ 39 (231)
T cd06215 2 RCVKIIQET-----PDVKTFRFAAPDGSLFAYKPGQFLTLELE 39 (231)
T ss_pred eEEEEEEcC-----CCeEEEEEECCCCCcCCcCCCCeEEEEEe
Confidence 577777777 47889999987332 78999999999744
No 106
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=29.32 E-value=1.2e+02 Score=28.32 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=30.5
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecC-CCcccCCCCEEEEccCC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 90 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~-~~~~y~~GD~l~I~p~N 90 (443)
+|++.+.+++ ++..|+|+.++ ....|+||.++.|..+.
T Consensus 5 ~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (228)
T cd06209 5 TVTEVERLSD-----STIGLTLELDEAGALAFLPGQYVNLQVPG 43 (228)
T ss_pred EEEEEEEcCC-----CeEEEEEEcCCCCcCccCCCCEEEEEeCC
Confidence 7888888773 68899999874 35789999999998654
No 107
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=28.45 E-value=1e+02 Score=26.70 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=22.7
Q ss_pred hHHHcHHHHHHhhcCCCEEEEeCCCCchHHHHHHHHHHH
Q 013425 374 KMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 412 (443)
Q Consensus 374 ~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i 412 (443)
.|.+..+.+.+.+.+++.||+||.. .-.........+.
T Consensus 20 ~i~~aa~~i~~~~~~gg~i~~~G~G-~S~~~a~~~~~~~ 57 (138)
T PF13580_consen 20 AIEKAADLIAEALRNGGRIFVCGNG-HSAAIASHFAADL 57 (138)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEEST-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCc-hhhhHHHHHHHHH
Confidence 3455566677778889999999997 4433344333333
No 108
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=28.33 E-value=77 Score=29.59 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=23.8
Q ss_pred CcEEEEEEEecCCCcccCCCCEEEEccCCC
Q 013425 62 KDVHHFEFEFVSAAIEYEVGDVLEILPSQD 91 (443)
Q Consensus 62 ~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~ 91 (443)
.++.+++|+.+ ....|+||.++.|..++.
T Consensus 9 ~~~~~~~l~~~-~~~~~~pGQ~v~l~~~~~ 37 (232)
T cd06190 9 HDVAEFRFALD-GPADFLPGQYALLALPGV 37 (232)
T ss_pred CCEEEEEEEcC-CccccCCCCEEEEECCCC
Confidence 47889999977 457899999999987653
No 109
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=28.28 E-value=1.1e+02 Score=28.73 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=29.4
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCC---cccCCCCEEEEccC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAA---IEYEVGDVLEILPS 89 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~---~~y~~GD~l~I~p~ 89 (443)
+|++.+.++ .+++.++|..+... ..|+||.++.|.++
T Consensus 5 ~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~ 44 (241)
T cd06214 5 TVAEVVRET-----ADAVSITFDVPEELRDAFRYRPGQFLTLRVP 44 (241)
T ss_pred EEEEEEecC-----CCeEEEEEecCcccCCCCCcCCCCeEEEEee
Confidence 788888876 47888999887322 58999999999976
No 110
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=28.27 E-value=34 Score=34.06 Aligned_cols=62 Identities=13% Similarity=0.129 Sum_probs=37.1
Q ss_pred Ccc-cCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCc---cCCCCccccCCCCCcchHHHHHHHccccCC
Q 013425 75 AIE-YEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEM---KNYLPDIHKNTTEVPIKLRTFVELTMDVTS 147 (443)
Q Consensus 75 ~~~-y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~---~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~ 147 (443)
+.+ |+|||++-..+.|...--.. --.+++..|.+....+ ..++ --.|||.+.+|++|+||+.
T Consensus 95 ~vkgfk~Gd~VIp~~a~lGtW~t~----~v~~e~~Li~vd~~~pl~~AAT~-------~VNP~TAyrmL~dfv~L~~ 160 (354)
T KOG0025|consen 95 NVKGFKPGDWVIPLSANLGTWRTE----AVFSESDLIKVDKDIPLASAATL-------SVNPCTAYRMLKDFVQLNK 160 (354)
T ss_pred CcCccCCCCeEeecCCCCccceee----EeecccceEEcCCcCChhhhhee-------ccCchHHHHHHHHHHhcCC
Confidence 444 99999999999985421110 1122334444432111 0111 1379999999999999986
No 111
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=28.07 E-value=5.5e+02 Score=24.74 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=21.9
Q ss_pred cchhHHHHHHHHHHhcCCCCCCCEEEEEeecCCc-cccC-HHHHHHh
Q 013425 298 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLY-RELWLSH 342 (443)
Q Consensus 298 GIAPfrs~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly-~~el~~~ 342 (443)
|++|=.+++++..... ++-++-=.|-+. ||+| .+|+.-+
T Consensus 35 G~TPSyG~~k~a~~~~------~ipv~~MIRPRgGdFvY~~~E~~iM 75 (241)
T COG3142 35 GLTPSYGVIKEAVELS------KIPVYVMIRPRGGDFVYSDDELEIM 75 (241)
T ss_pred CCCCCHHHHHHHHhhc------CCceEEEEecCCCCcccChHHHHHH
Confidence 6678888887776642 233333344444 6666 4444444
No 112
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=27.88 E-value=1.4e+02 Score=22.09 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=32.3
Q ss_pred EEeCCCCchHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHc
Q 013425 393 YVAGSATKMPSDVWSTFEEIVSKEG-----EASRDSAANWLKALQRA 434 (443)
Q Consensus 393 yvCG~~~~M~~~V~~~L~~i~~~~~-----~~~~~~a~~~l~~l~~~ 434 (443)
|+.|+. +|...-..-|+.+..+.+ ++++.+|.+.|..|+..
T Consensus 9 w~tGDe-PmT~aQ~syL~tL~e~Age~~~~~LtkaeAs~rId~L~~~ 54 (57)
T PF11272_consen 9 WVTGDE-PMTGAQASYLKTLSEEAGEPFPDDLTKAEASERIDELQAQ 54 (57)
T ss_pred ccCCCC-CCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHH
Confidence 578997 998777777777666553 47999999999999864
No 113
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=27.56 E-value=76 Score=30.28 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=27.8
Q ss_pred EEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCC
Q 013425 50 IKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 90 (443)
Q Consensus 50 ~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N 90 (443)
++.+.++ .++++|+|+.+.....|+||+++.|..+.
T Consensus 2 ~~~~~~t-----~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~ 37 (246)
T cd06218 2 LSNREIA-----DDIYRLVLEAPEIAAAAKPGQFVMLRVPD 37 (246)
T ss_pred cceeEec-----CCeEEEEEeCcchhccCCCCcEEEEEeCC
Confidence 4455655 47899999987436789999999998765
No 114
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=26.70 E-value=1.1e+02 Score=28.41 Aligned_cols=35 Identities=11% Similarity=0.282 Sum_probs=27.2
Q ss_pred EEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCC
Q 013425 50 IKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 90 (443)
Q Consensus 50 ~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N 90 (443)
++.+.++ .++++++|..+. ...|+||.++.|..++
T Consensus 2 ~~~~~~~-----~~~~~~~l~~~~-~~~~~pGq~i~l~~~~ 36 (224)
T cd06187 2 VSVERLT-----HDIAVVRLQLDQ-PLPFWAGQYVNVTVPG 36 (224)
T ss_pred eeeeecC-----CCEEEEEEEeCC-CCCcCCCceEEEEcCC
Confidence 4555555 478999999874 4889999999998654
No 115
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=26.26 E-value=1.3e+02 Score=28.05 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=29.2
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 90 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N 90 (443)
+|++.+.++ .++++++|..+. ...|+||.++.|..++
T Consensus 2 ~v~~~~~~t-----~~~~~l~l~~~~-~~~~~pGQ~v~l~~~~ 38 (224)
T cd06189 2 KVESIEPLN-----DDVYRVRLKPPA-PLDFLAGQYLDLLLDD 38 (224)
T ss_pred EEEEEEeCC-----CceEEEEEecCC-CcccCCCCEEEEEcCC
Confidence 456666666 478999999773 7899999999999754
No 116
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=26.05 E-value=1.3e+02 Score=28.71 Aligned_cols=38 Identities=8% Similarity=0.223 Sum_probs=31.0
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQD 91 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N~ 91 (443)
+|++.+.+++ ++..++|+.+ ....|+||.++.|..++.
T Consensus 8 ~V~~~~~~t~-----d~~~l~l~~~-~~~~~~pGQ~v~l~~~~~ 45 (250)
T PRK00054 8 KIVENKEIAP-----NIYTLVLDGE-KVFDMKPGQFVMVWVPGV 45 (250)
T ss_pred EEEEEEEecC-----CeEEEEEeCc-cccCCCCCcEEEEEeCCC
Confidence 7888888883 7889999855 567899999999986654
No 117
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=25.80 E-value=74 Score=27.67 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=40.3
Q ss_pred HccccCCCCCCHHHHHHHHHhccCh----------hHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHHhhCC
Q 013425 141 LTMDVTSASPRRYFFEVMSYFATAE----------HEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 202 (443)
Q Consensus 141 ~~~Dl~~~~p~~~~l~~la~~~~~~----------~~k~~L~~l~~~~~~~~~~~~~~~~~~~l~d~L~~f~ 202 (443)
.||+-.+.-|++.++..|.+...+. -||.+|.+|+.. -.+|.+.+..=...++|++.-|.
T Consensus 47 efL~~~~~DPr~~~~~~L~~~i~~~~g~ivvyN~sfE~~rL~ela~~--~p~~~~~l~~I~~r~vDL~~~f~ 116 (130)
T PF11074_consen 47 EFLADPGEDPRRELIEALIKAIGSIYGSIVVYNKSFEKTRLKELAEL--FPDYAEKLNSIIERTVDLLDPFK 116 (130)
T ss_pred HHhccCCCCchHHHHHHHHHHhhhhcCeEEEechHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444433379999999998887766 799999999863 34455555444455666666554
No 118
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=25.69 E-value=1.5e+02 Score=27.85 Aligned_cols=40 Identities=15% Similarity=0.371 Sum_probs=31.1
Q ss_pred ce-eEEEeeeecCCCCCCcEEEEEEEecCCC-cccCCCCEEEEccCC
Q 013425 46 FL-KMIKNQPLTKSGSGKDVHHFEFEFVSAA-IEYEVGDVLEILPSQ 90 (443)
Q Consensus 46 ~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~-~~y~~GD~l~I~p~N 90 (443)
|. +|++.+.+|+ +++.++|+.+... ..|+||.++.|..++
T Consensus 7 ~~~~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 48 (238)
T cd06211 7 FEGTVVEIEDLTP-----TIKGVRLKLDEPEEIEFQAGQYVNLQAPG 48 (238)
T ss_pred EeEEEEEEEecCC-----CEEEEEEEcCCCCcCccCCCCeEEEEcCC
Confidence 44 8888888873 7889999987332 589999999998654
No 119
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=25.47 E-value=1.2e+02 Score=28.23 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=28.2
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCC-CcccCCCCEEEEccCC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSA-AIEYEVGDVLEILPSQ 90 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~-~~~y~~GD~l~I~p~N 90 (443)
+|++.+.++ .++++++|+.++. ...|+||.++.|....
T Consensus 2 ~v~~i~~~t-----~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 40 (231)
T cd06191 2 RVAEVRSET-----PDAVTIVFAVPGPLQYGFRPGQHVTLKLDF 40 (231)
T ss_pred EEEEEEecC-----CCcEEEEEeCCCCCCCCCCCCCeEEEEEec
Confidence 466667666 4788999998743 2589999999997543
No 120
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=25.24 E-value=97 Score=31.43 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=21.6
Q ss_pred CCeEEEeCCcc--chhHHHHHHHHHHh
Q 013425 288 VPLILIGPGTG--CAPFRGFVEERAIQ 312 (443)
Q Consensus 288 ~piImIa~GTG--IAPfrs~lq~~~~~ 312 (443)
+.+++.|+||| |-|-+|+.++....
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC
Confidence 35899999999 89999999998763
No 121
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=25.16 E-value=1.3e+02 Score=30.05 Aligned_cols=38 Identities=13% Similarity=0.364 Sum_probs=30.7
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecC-CCcccCCCCEEEEccCC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 90 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~-~~~~y~~GD~l~I~p~N 90 (443)
+|++.+.++ .++++++|+.++ ....|+||.++.|..++
T Consensus 106 ~V~~~~~~~-----~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~ 144 (339)
T PRK07609 106 RVASLERVA-----GDVMRLKLRLPATERLQYLAGQYIEFILKD 144 (339)
T ss_pred EEEEEEcCC-----CcEEEEEEEcCCCCCCccCCCCeEEEECCC
Confidence 888888776 378899999873 35789999999998764
No 122
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=25.16 E-value=3.2e+02 Score=24.35 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=60.3
Q ss_pred eEEEeCCccchhHHHHHHHHHH--hcCCCCCCCEEEEEeecCC------c--cccCHHHHHHhhhcC-CCccccCCCeE-
Q 013425 290 LILIGPGTGCAPFRGFVEERAI--QSSSGPAAPIIFFFGCRNE------D--DFLYRELWLSHSLND-GVFSEAKGGGF- 357 (443)
Q Consensus 290 iImIa~GTGIAPfrs~lq~~~~--~~~~~~~~~~~L~~G~R~~------~--d~ly~~el~~~~~~~-g~l~~~~~~~~- 357 (443)
+|||-.|+-.-||...+..... .... -..++.+=||.-.. . .|.+.++++.+..+. =.++|||.+.+
T Consensus 1 mifVTvGstf~~f~rlv~k~e~~el~~~-i~e~lIvQyGn~d~kpvagl~v~~F~~~~kiQsli~darIVISHaG~GSIL 79 (161)
T COG5017 1 MIFVTVGSTFYPFNRLVLKIEVLELTEL-IQEELIVQYGNGDIKPVAGLRVYGFDKEEKIQSLIHDARIVISHAGEGSIL 79 (161)
T ss_pred CeEEEecCccchHHHHHhhHHHHHHHHH-hhhheeeeecCCCcccccccEEEeechHHHHHHHhhcceEEEeccCcchHH
Confidence 4789999988888777654221 1100 00345555554321 1 566788888886542 13444442222
Q ss_pred --------EEEEccCCCCcccchhhHHHcHHHHHHhhcCCCEEEEeCCC
Q 013425 358 --------YVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSA 398 (443)
Q Consensus 358 --------~~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~ 398 (443)
...++|++ . -|+++.++.-++..-+.+..++.+|-|.
T Consensus 80 ~~~rl~kplIv~pr~s---~-y~elvDdHQvela~klae~~~vv~~spt 124 (161)
T COG5017 80 LLLRLDKPLIVVPRSS---Q-YQELVDDHQVELALKLAEINYVVACSPT 124 (161)
T ss_pred HHhhcCCcEEEEECch---h-HHHhhhhHHHHHHHHHHhcCceEEEcCC
Confidence 33444432 2 3566766666666666677889999986
No 123
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.47 E-value=2.9e+02 Score=26.85 Aligned_cols=27 Identities=15% Similarity=0.453 Sum_probs=18.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHHHH
Q 013425 388 SKASIYVAGSATKMPSDVWSTFEEIVS 414 (443)
Q Consensus 388 ~~~~iyvCG~~~~M~~~V~~~L~~i~~ 414 (443)
.+..|.++|+-..+++++.+++.++..
T Consensus 108 ~~iri~viG~~~~Lp~~~~~~~~~~e~ 134 (251)
T PRK14830 108 NNVKVNVIGDTDRLPEHTLRALEKAIE 134 (251)
T ss_pred cCCEEEEEcChhhCCHHHHHHHHHHHH
Confidence 377788888876667777777666553
No 124
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=24.31 E-value=2.6e+02 Score=26.41 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=23.1
Q ss_pred CCcchHHHHHHH-ccccCCCCCCHHHHHHHHH
Q 013425 130 EVPIKLRTFVEL-TMDVTSASPRRYFFEVMSY 160 (443)
Q Consensus 130 ~~~~tl~~ll~~-~~Dl~~~~p~~~~l~~la~ 160 (443)
..+++=.++|++ ||||++.+|+..-++.+..
T Consensus 19 s~~add~~~lRRv~LDL~G~~PT~eEv~~Fl~ 50 (208)
T PF07583_consen 19 SPPADDATFLRRVYLDLTGLPPTPEEVRAFLA 50 (208)
T ss_pred CCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHh
Confidence 356667888887 9999998888876555433
No 125
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=24.02 E-value=71 Score=23.70 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=20.4
Q ss_pred cCCCcccCCCCEEEEccCCCHHHHHHHHHHcC
Q 013425 72 VSAAIEYEVGDVLEILPSQDPAAVDTFIQRCN 103 (443)
Q Consensus 72 ~~~~~~y~~GD~l~I~p~N~~~~V~~~l~~l~ 103 (443)
+..+...++||.|.|... ++.++++.+.||
T Consensus 42 p~~~~~l~~gD~l~v~g~--~~~i~~~~~~~g 71 (71)
T PF02080_consen 42 PDGDTVLQAGDILIVVGD--PEDIERFRELFG 71 (71)
T ss_dssp --TT-BE-TTEEEEEEEE--HHHHHHHHHHT-
T ss_pred CCCCCEECCCCEEEEEEC--HHHHHHHHHhhC
Confidence 345788999999999664 556999888775
No 126
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.56 E-value=2.1e+02 Score=27.62 Aligned_cols=59 Identities=17% Similarity=0.104 Sum_probs=35.5
Q ss_pred EEEEEccCCC-----CcccchhhHHHcHHHHHHh-hcCCCEEEEeCCCCchHHHHHHHHHHHHHH
Q 013425 357 FYVAFSRKQP-----QKVYVQHKMLEQSQRIWNL-LLSKASIYVAGSATKMPSDVWSTFEEIVSK 415 (443)
Q Consensus 357 ~~~a~Sr~~~-----~k~yVqd~l~~~~~~l~~~-l~~~~~iyvCG~~~~M~~~V~~~L~~i~~~ 415 (443)
-..|||.+.- +-..+.+++.+......+. ...+..|.++|+...+++++.+.+.++...
T Consensus 57 TvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iG~~~~Lp~~l~~~i~~~e~~ 121 (241)
T PRK14842 57 SLYAFSTENWKRPITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAK 121 (241)
T ss_pred EEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHH
Confidence 3556676543 2233333344333332222 334888899999888888888888887644
No 127
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.42 E-value=2.2e+02 Score=27.65 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=36.7
Q ss_pred EEEEccCCC-----CcccchhhHHHcHHHHHHhh-cCCCEEEEeCCCCchHHHHHHHHHHHHHHh
Q 013425 358 YVAFSRKQP-----QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKE 416 (443)
Q Consensus 358 ~~a~Sr~~~-----~k~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~V~~~L~~i~~~~ 416 (443)
..|||.+.- +..++-+++.+......+.+ ..+..|-++|+-..+++++++++.++....
T Consensus 72 vYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T 136 (250)
T PRK14840 72 LFAFSTENFSRSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSAT 136 (250)
T ss_pred EEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHh
Confidence 556676543 22344444444433333333 348889999998888888888888877554
No 128
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=23.14 E-value=1.6e+02 Score=27.21 Aligned_cols=39 Identities=26% Similarity=0.532 Sum_probs=29.4
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecC--CCcccCCCCEEEEccCCC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVS--AAIEYEVGDVLEILPSQD 91 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~--~~~~y~~GD~l~I~p~N~ 91 (443)
+|++.+.++ .++..++|+.+. ....|+||.++.|..+.+
T Consensus 2 ~v~~~~~~~-----~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~ 42 (234)
T cd06183 2 KLVSKEDIS-----HDTRIFRFELPSPDQVLGLPVGQHVELKAPDD 42 (234)
T ss_pred EeEEeEecC-----CCEEEEEEECCCCCCcCCCCcccEEEEEecCC
Confidence 466677766 467788888873 247899999999987654
No 129
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.10 E-value=2.4e+02 Score=27.05 Aligned_cols=60 Identities=8% Similarity=0.065 Sum_probs=37.2
Q ss_pred EEEEEccCCC-----CcccchhhHHHcHHHHHHhh-cCCCEEEEeCCCCchHHHHHHHHHHHHHHh
Q 013425 357 FYVAFSRKQP-----QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKE 416 (443)
Q Consensus 357 ~~~a~Sr~~~-----~k~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~V~~~L~~i~~~~ 416 (443)
-..|||.+.- +-..+.+++........+.+ ..+..|-++|+-..+++++++++.++-...
T Consensus 53 TvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T 118 (233)
T PRK14833 53 TLYAFSTENWKRPKSEVDFLMKLLKKYLKDERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDT 118 (233)
T ss_pred EEeecchhhcCcCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeChhhCCHHHHHHHHHHHHHc
Confidence 3566776554 22233344444333322333 348889999998888899998888887554
No 130
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.46 E-value=3e+02 Score=26.45 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=36.6
Q ss_pred EEEEEccCCC-----CcccchhhHHHcHHH-HHHhhcCCCEEEEeCCCCchHHHHHHHHHHHHHHh
Q 013425 357 FYVAFSRKQP-----QKVYVQHKMLEQSQR-IWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKE 416 (443)
Q Consensus 357 ~~~a~Sr~~~-----~k~yVqd~l~~~~~~-l~~~l~~~~~iyvCG~~~~M~~~V~~~L~~i~~~~ 416 (443)
-..|||.+.- +-.++-+++.+.... +..+...+..|-++|+-..+++++.+++.++....
T Consensus 55 T~YaFS~EN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T 120 (230)
T PRK14837 55 SLYVFSTENWNRTDSEIEHLMFLIADYLSSEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFT 120 (230)
T ss_pred EEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHHh
Confidence 3567776654 222333334333222 22233448889999998888888888888877543
No 131
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=21.43 E-value=51 Score=26.79 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=9.7
Q ss_pred EEEeCCccchh
Q 013425 291 ILIGPGTGCAP 301 (443)
Q Consensus 291 ImIa~GTGIAP 301 (443)
|+++||+|+|-
T Consensus 5 ILvvCgsG~~T 15 (94)
T PRK10310 5 IIVACGGAVAT 15 (94)
T ss_pred EEEECCCchhH
Confidence 89999999954
No 132
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=21.40 E-value=1.6e+02 Score=28.01 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=28.6
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 90 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N 90 (443)
+|++.+.++ .+++.++|+.+.....|+||.++.|...+
T Consensus 2 ~v~~~~~~t-----~d~~~~~l~~~~~~~~~~pGQf~~l~~~~ 39 (248)
T cd06219 2 KILEKEELA-----PNVKLFEIEAPLIAKKAKPGQFVIVRADE 39 (248)
T ss_pred EEEEEEEeC-----CCeEEEEEEChhhhccCCCCcEEEEEcCC
Confidence 466777777 37888999876434689999999998654
No 133
>PRK08051 fre FMN reductase; Validated
Probab=21.30 E-value=1.7e+02 Score=27.53 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.5
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 89 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~ 89 (443)
+|++.+.++ .++++|+|..+ ....|+||.++.|...
T Consensus 6 ~v~~i~~~~-----~~~~~l~l~~~-~~~~~~pGQ~v~l~~~ 41 (232)
T PRK08051 6 KVTSVEAIT-----DTVYRVRLVPE-APFSFRAGQYLMVVMG 41 (232)
T ss_pred EEEEEecCC-----CCeEEEEEecC-CCCccCCCCEEEEEcC
Confidence 677777766 47889999865 4689999999999853
No 134
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=21.11 E-value=1.6e+02 Score=27.81 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=29.1
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 89 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~ 89 (443)
+|++.+.++ .++++|+|+.+.....|+||.++.|..+
T Consensus 21 ~v~~i~~~~-----~~~~~i~l~~~~~~~~~~pGQ~i~l~~~ 57 (243)
T cd06216 21 RVVAVRPET-----ADMVTLTLRPNRGWPGHRAGQHVRLGVE 57 (243)
T ss_pred EEEEEEEcC-----CCcEEEEEecCCCCCCcCCCceEEEEEE
Confidence 788888776 3788999997643468999999999754
No 135
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.80 E-value=3.1e+02 Score=26.74 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=21.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHHHHH
Q 013425 388 SKASIYVAGSATKMPSDVWSTFEEIVSK 415 (443)
Q Consensus 388 ~~~~iyvCG~~~~M~~~V~~~L~~i~~~ 415 (443)
.+..|-++|+-..+++++.+.+.++...
T Consensus 104 ~~irv~~iGd~~~Lp~~l~~~i~~~e~~ 131 (253)
T PRK14832 104 EGVRISFIGDLSALPKSLQTEMERSMTE 131 (253)
T ss_pred cCCEEEEEeCchhCCHHHHHHHHHHHHH
Confidence 4788888888878888888888777654
No 136
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=20.75 E-value=26 Score=19.54 Aligned_cols=10 Identities=50% Similarity=0.972 Sum_probs=7.4
Q ss_pred ccchhHHHHH
Q 013425 297 TGCAPFRGFV 306 (443)
Q Consensus 297 TGIAPfrs~l 306 (443)
+|++|||+-.
T Consensus 6 ~gftpfrgkf 15 (19)
T PF06753_consen 6 PGFTPFRGKF 15 (19)
T ss_pred CCCCcccccc
Confidence 6888988643
No 137
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=20.26 E-value=1.7e+02 Score=27.47 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=27.9
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCC
Q 013425 48 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 90 (443)
Q Consensus 48 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~I~p~N 90 (443)
+|++.+.+|+ +++.++|..+ ....|+||.++.|.-+.
T Consensus 1 ~v~~~~~~t~-----~~~~~~l~~~-~~~~~~pGQ~v~l~~~~ 37 (241)
T cd06195 1 TVLKRRDWTD-----DLFSFRVTRD-IPFRFQAGQFTKLGLPN 37 (241)
T ss_pred CeEEEEEcCC-----CEEEEEEcCC-CCCccCCCCeEEEeccC
Confidence 3667777764 4888888876 36789999999996444
Done!