Query 013427
Match_columns 443
No_of_seqs 125 out of 1237
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 5.3E-58 1.2E-62 446.1 31.8 403 4-440 34-437 (437)
2 KOG1304 Amino acid transporter 100.0 1.1E-56 2.5E-61 428.8 29.1 386 9-437 48-449 (449)
3 PTZ00206 amino acid transporte 100.0 9.6E-57 2.1E-61 450.1 27.6 403 6-438 58-465 (467)
4 PF01490 Aa_trans: Transmembra 100.0 2E-54 4.4E-59 431.3 -1.5 402 6-434 1-408 (409)
5 PLN03074 auxin influx permease 100.0 3.5E-48 7.6E-53 386.3 28.9 388 7-442 45-456 (473)
6 KOG1305 Amino acid transporter 100.0 9.5E-47 2.1E-51 365.7 25.6 401 5-440 3-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 3.1E-44 6.6E-49 323.4 5.5 401 5-442 114-519 (524)
8 COG0814 SdaC Amino acid permea 100.0 2.2E-32 4.8E-37 269.2 31.7 394 2-431 3-409 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 99.9 7.6E-24 1.6E-28 207.4 31.5 353 6-407 1-367 (394)
10 PRK10483 tryptophan permease; 99.9 1.3E-23 2.8E-28 203.7 29.4 355 3-405 6-373 (414)
11 PRK09664 tryptophan permease T 99.9 3.2E-23 6.9E-28 200.7 28.4 356 5-405 6-374 (415)
12 PRK15132 tyrosine transporter 99.9 1.4E-22 3E-27 197.4 29.2 349 8-406 3-363 (403)
13 TIGR00837 araaP aromatic amino 99.9 2.9E-23 6.3E-28 204.8 22.7 345 14-405 3-359 (381)
14 PRK13629 threonine/serine tran 99.9 3E-20 6.5E-25 180.1 30.3 360 12-403 23-413 (443)
15 TIGR00814 stp serine transport 99.9 7.7E-19 1.7E-23 171.8 28.4 358 12-403 7-377 (397)
16 PRK10655 potE putrescine trans 99.7 1.3E-13 2.9E-18 138.6 32.4 244 1-270 1-245 (438)
17 PRK10435 cadB lysine/cadaverin 99.6 1.5E-12 3.1E-17 130.8 31.6 246 2-273 1-246 (435)
18 PRK10644 arginine:agmatin anti 99.6 1.2E-12 2.5E-17 131.9 31.0 242 2-270 4-247 (445)
19 TIGR03810 arg_ornith_anti argi 99.5 1.4E-11 3.1E-16 124.8 31.6 368 6-405 1-380 (468)
20 TIGR00905 2A0302 transporter, 99.5 1.9E-11 4.1E-16 124.1 32.5 248 5-271 6-255 (473)
21 TIGR00909 2A0306 amino acid tr 99.5 1.9E-11 4E-16 122.8 28.3 298 5-320 2-305 (429)
22 PRK10746 putative transport pr 99.5 3.9E-11 8.4E-16 121.2 30.4 366 5-405 9-388 (461)
23 PRK10249 phenylalanine transpo 99.5 5.6E-11 1.2E-15 120.0 31.0 242 5-269 20-264 (458)
24 PRK11021 putative transporter; 99.5 1.5E-10 3.2E-15 115.5 33.0 230 9-268 2-231 (410)
25 PRK10238 aromatic amino acid t 99.5 7.8E-11 1.7E-15 118.9 29.5 364 5-404 11-385 (456)
26 PRK15049 L-asparagine permease 99.5 1.1E-10 2.3E-15 119.0 29.6 364 6-404 28-405 (499)
27 PRK11049 D-alanine/D-serine/gl 99.4 4.1E-10 8.9E-15 114.2 32.4 242 5-270 19-267 (469)
28 TIGR01773 GABAperm gamma-amino 99.4 3.4E-10 7.4E-15 114.3 31.7 242 5-270 11-257 (452)
29 TIGR00913 2A0310 amino acid pe 99.4 4.1E-10 8.9E-15 114.6 32.2 242 5-268 1-251 (478)
30 PRK10580 proY putative proline 99.4 5E-10 1.1E-14 113.2 31.3 240 5-268 8-253 (457)
31 TIGR00906 2A0303 cationic amin 99.4 2.2E-10 4.8E-15 118.0 28.5 371 5-404 27-410 (557)
32 TIGR00912 2A0309 spore germina 99.4 4.6E-11 9.9E-16 117.0 22.4 238 7-277 2-241 (359)
33 PRK11387 S-methylmethionine tr 99.4 7.3E-10 1.6E-14 112.5 29.8 245 5-272 13-264 (471)
34 PF13520 AA_permease_2: Amino 99.4 4.2E-10 9.1E-15 112.9 27.0 289 9-325 2-304 (426)
35 PRK11357 frlA putative fructos 99.4 8.5E-10 1.8E-14 111.2 28.2 241 5-269 7-250 (445)
36 KOG1287 Amino acid transporter 99.3 1.2E-10 2.6E-15 113.8 20.4 365 4-406 10-387 (479)
37 PRK10836 lysine transporter; P 99.3 5.4E-09 1.2E-13 106.6 31.5 244 5-271 14-262 (489)
38 PRK10197 gamma-aminobutyrate t 99.3 2E-09 4.3E-14 108.4 27.5 347 18-404 4-367 (446)
39 TIGR00908 2A0305 ethanolamine 99.3 1.9E-09 4.1E-14 108.7 27.0 237 5-267 6-244 (442)
40 TIGR00911 2A0308 L-type amino 99.3 1.6E-09 3.6E-14 110.8 26.3 244 5-270 41-291 (501)
41 COG1113 AnsP Gamma-aminobutyra 99.3 1.5E-09 3.2E-14 104.6 23.7 360 8-404 15-388 (462)
42 PRK15238 inner membrane transp 99.3 9.9E-09 2.1E-13 104.9 30.3 255 1-269 1-266 (496)
43 TIGR00930 2a30 K-Cl cotranspor 99.2 7.1E-09 1.5E-13 112.1 26.8 246 7-268 77-334 (953)
44 KOG3832 Predicted amino acid t 99.1 4.7E-10 1E-14 95.5 10.0 215 14-239 18-301 (319)
45 COG0531 PotE Amino acid transp 99.1 1.2E-07 2.7E-12 96.1 29.2 247 6-275 12-262 (466)
46 TIGR03428 ureacarb_perm permea 99.1 4.6E-07 1E-11 92.2 32.6 253 5-268 12-267 (475)
47 TIGR00907 2A0304 amino acid pe 99.1 1.6E-07 3.4E-12 95.8 28.5 245 5-264 11-267 (482)
48 TIGR00910 2A0307_GadC glutamat 99.0 8.5E-07 1.8E-11 90.7 28.8 236 4-266 2-246 (507)
49 TIGR03813 put_Glu_GABA_T putat 99.0 1.5E-06 3.3E-11 88.4 30.4 52 219-273 202-253 (474)
50 PF03845 Spore_permease: Spore 98.9 6.8E-07 1.5E-11 86.0 22.4 237 7-277 1-237 (320)
51 COG0833 LysP Amino acid transp 98.7 2.4E-05 5.3E-10 77.6 28.3 295 6-325 44-357 (541)
52 PF00324 AA_permease: Amino ac 98.7 1.3E-07 2.9E-12 96.3 12.3 244 18-277 7-263 (478)
53 KOG1286 Amino acid transporter 98.4 3E-06 6.4E-11 86.3 13.8 304 5-324 29-351 (554)
54 COG3949 Uncharacterized membra 98.3 0.00031 6.8E-09 65.4 23.2 138 10-169 5-145 (349)
55 TIGR00800 ncs1 NCS1 nucleoside 98.3 0.00042 9.1E-09 69.8 26.1 191 76-277 76-274 (442)
56 PRK09442 panF sodium/panthothe 98.2 0.0049 1.1E-07 62.9 31.5 149 6-175 41-194 (483)
57 TIGR02358 thia_cytX probable h 98.2 0.0059 1.3E-07 60.3 30.4 226 10-275 7-233 (386)
58 TIGR02119 panF sodium/pantothe 98.1 0.0085 1.8E-07 61.0 31.0 147 6-174 40-192 (471)
59 COG0591 PutP Na+/proline sympo 98.1 0.015 3.2E-07 59.4 32.7 145 9-174 41-190 (493)
60 PRK11375 allantoin permease; P 98.1 0.0071 1.5E-07 61.5 29.4 184 75-267 88-280 (484)
61 KOG1289 Amino acid transporter 98.1 0.00058 1.3E-08 67.9 20.6 234 29-277 73-315 (550)
62 PRK12488 acetate permease; Pro 98.0 0.024 5.3E-07 58.7 34.0 147 6-175 67-216 (549)
63 PF00474 SSF: Sodium:solute sy 98.0 0.00049 1.1E-08 68.6 19.3 149 5-175 5-156 (406)
64 TIGR00813 sss transporter, SSS 97.9 0.011 2.5E-07 58.8 26.3 148 5-174 2-151 (407)
65 PRK11017 codB cytosine permeas 97.9 0.013 2.8E-07 58.3 26.0 174 75-275 70-244 (404)
66 TIGR02711 symport_actP cation/ 97.7 0.084 1.8E-06 54.8 32.4 146 6-174 67-215 (549)
67 COG1457 CodB Purine-cytosine p 97.6 0.042 9E-07 54.4 24.1 174 79-277 84-258 (442)
68 TIGR00796 livcs branched-chain 97.5 0.065 1.4E-06 52.4 24.4 71 16-98 3-76 (378)
69 TIGR02121 Na_Pro_sym sodium/pr 97.5 0.17 3.7E-06 51.7 29.4 152 6-174 36-191 (487)
70 TIGR00835 agcS amino acid carr 97.5 0.034 7.5E-07 55.0 21.5 83 8-97 47-138 (425)
71 PF02133 Transp_cyt_pur: Perme 97.3 0.0024 5.1E-08 64.4 12.3 249 4-272 5-259 (440)
72 PRK09395 actP acetate permease 97.3 0.28 6E-06 51.0 33.1 146 6-174 69-217 (551)
73 PRK15419 proline:sodium sympor 97.1 0.41 9E-06 49.1 27.8 152 5-174 39-195 (502)
74 TIGR03648 Na_symport_lg probab 97.1 0.49 1.1E-05 49.2 34.8 148 5-174 31-180 (552)
75 COG1953 FUI1 Cytosine/uracil/t 96.9 0.5 1.1E-05 47.2 23.9 201 74-286 101-318 (497)
76 COG1914 MntH Mn2+ and Fe2+ tra 96.9 0.53 1.1E-05 46.6 25.9 45 77-121 78-122 (416)
77 COG4147 DhlC Predicted symport 96.5 1.1 2.3E-05 44.5 27.5 226 24-272 60-294 (529)
78 PF02554 CstA: Carbon starvati 96.4 0.083 1.8E-06 50.6 13.1 104 10-119 54-157 (376)
79 PRK10484 putative transporter; 96.3 1.6 3.5E-05 45.0 29.3 153 6-174 38-196 (523)
80 PF01566 Nramp: Natural resist 95.4 2.5 5.4E-05 41.3 19.3 77 77-167 43-121 (358)
81 PRK15015 carbon starvation pro 95.0 0.26 5.7E-06 50.6 11.4 101 12-118 87-187 (701)
82 TIGR00796 livcs branched-chain 94.5 0.68 1.5E-05 45.4 12.6 79 74-166 253-331 (378)
83 PF05525 Branch_AA_trans: Bran 94.2 0.55 1.2E-05 46.6 11.3 108 30-156 221-328 (427)
84 PF05525 Branch_AA_trans: Bran 93.8 7.7 0.00017 38.6 20.1 66 9-86 4-73 (427)
85 COG1114 BrnQ Branched-chain am 93.2 1.6 3.4E-05 42.7 12.0 119 31-169 224-342 (431)
86 KOG1288 Amino acid transporter 92.4 3.6 7.7E-05 42.7 13.8 224 28-270 89-350 (945)
87 COG1966 CstA Carbon starvation 91.0 3.1 6.7E-05 42.1 11.4 104 10-119 54-157 (575)
88 KOG2083 Na+/K+ symporter [Inor 90.9 0.81 1.8E-05 46.5 7.4 209 27-265 51-274 (643)
89 PRK00701 manganese transport p 90.4 21 0.00046 35.9 27.9 45 76-120 94-138 (439)
90 PRK15433 branched-chain amino 89.4 5.8 0.00013 39.6 12.0 113 33-166 228-340 (439)
91 PRK15433 branched-chain amino 87.3 34 0.00074 34.3 21.5 67 8-86 8-78 (439)
92 COG0814 SdaC Amino acid permea 86.5 2.4 5.2E-05 42.3 7.5 154 244-405 220-376 (415)
93 KOG2466 Uridine permease/thiam 85.9 41 0.00089 33.9 15.2 262 6-286 54-332 (572)
94 PF01235 Na_Ala_symp: Sodium:a 79.5 70 0.0015 31.9 21.8 79 8-89 19-101 (416)
95 COG1114 BrnQ Branched-chain am 74.0 97 0.0021 30.7 14.7 42 9-50 6-50 (431)
96 KOG2349 Na+:iodide/myo-inosito 73.5 85 0.0018 32.7 13.3 243 6-274 45-302 (585)
97 COG1115 AlsT Na+/alanine sympo 73.4 1E+02 0.0023 30.8 23.5 107 9-119 64-177 (452)
98 TIGR01197 nramp NRAMP (natural 72.5 1E+02 0.0023 30.4 25.2 95 15-120 11-108 (390)
99 PHA02764 hypothetical protein; 71.6 21 0.00045 33.9 7.7 89 6-102 12-103 (399)
100 KOG2082 K+/Cl- cotransporter K 65.1 2E+02 0.0044 30.9 21.4 86 29-119 137-222 (1075)
101 COG0733 Na+-dependent transpor 57.8 2.1E+02 0.0046 28.7 23.7 107 9-122 10-117 (439)
102 PF02447 GntP_permease: GntP f 53.3 1.6E+02 0.0034 29.7 10.9 80 363-442 240-323 (441)
103 PRK09950 putative transporter; 50.2 3.1E+02 0.0066 28.3 12.5 151 38-195 350-502 (506)
104 TIGR00842 bcct choline/carniti 48.2 1.8E+02 0.0039 29.4 10.4 116 4-123 33-171 (453)
105 PRK04949 putative sulfate tran 44.0 1.1E+02 0.0025 28.1 7.7 36 235-275 19-54 (251)
106 PRK09928 choline transport pro 42.9 2.6E+02 0.0057 29.8 10.9 86 103-189 416-502 (679)
107 PRK13183 psbN photosystem II r 42.4 34 0.00073 22.1 2.7 31 247-277 4-34 (46)
108 TIGR00842 bcct choline/carniti 42.2 3.8E+02 0.0083 27.1 13.2 69 102-170 362-432 (453)
109 PRK10034 fructuronate transpor 42.0 2.8E+02 0.006 28.1 10.6 68 375-442 255-323 (447)
110 COG1292 BetT Choline-glycine b 40.8 2.1E+02 0.0045 29.4 9.4 87 101-190 410-496 (537)
111 PRK03356 L-carnitine/gamma-but 40.7 4.3E+02 0.0092 27.2 12.6 67 104-170 413-480 (504)
112 TIGR00909 2A0306 amino acid tr 39.4 3.6E+02 0.0079 26.7 11.3 47 77-123 265-311 (429)
113 PF02028 BCCT: BCCT family tra 39.0 3.3E+02 0.0072 27.8 10.8 145 38-191 341-485 (485)
114 CHL00020 psbN photosystem II p 38.0 33 0.00072 21.8 2.2 29 249-277 3-31 (43)
115 KOG1619 Cytochrome b [Energy p 36.6 2.5E+02 0.0055 25.5 8.3 90 218-315 62-151 (245)
116 PRK09928 choline transport pro 36.2 2.7E+02 0.0058 29.8 9.7 25 5-29 90-114 (679)
117 PLN02351 cytochromes b561 fami 36.2 3E+02 0.0065 25.1 8.8 67 245-316 80-146 (242)
118 PF00209 SNF: Sodium:neurotran 35.7 5.1E+02 0.011 26.7 26.4 30 9-38 6-36 (523)
119 PF02468 PsbN: Photosystem II 35.4 38 0.00083 21.6 2.2 28 250-277 4-31 (43)
120 cd08766 Cyt_b561_ACYB-1_like P 34.8 74 0.0016 26.5 4.5 68 245-316 37-104 (144)
121 PLN02680 carbon-monoxide oxyge 34.6 70 0.0015 29.0 4.6 67 245-315 76-142 (232)
122 cd08765 Cyt_b561_CYBRD1 Verteb 31.9 1.1E+02 0.0024 25.8 5.1 68 245-316 44-111 (153)
123 cd08763 Cyt_b561_CYB561 Verteb 30.5 1.2E+02 0.0026 25.2 5.1 68 245-316 37-104 (143)
124 KOG4812 Golgi-associated prote 29.4 1.1E+02 0.0024 27.7 4.8 65 364-432 165-243 (262)
125 cd08762 Cyt_b561_CYBASC3 Verte 28.5 95 0.0021 26.9 4.2 67 245-315 67-133 (179)
126 PLN02810 carbon-monoxide oxyge 28.0 4.6E+02 0.01 23.8 9.1 68 245-316 76-143 (231)
127 KOG2174 Leptin receptor gene-r 27.8 1.4E+02 0.003 24.1 4.6 55 9-63 64-120 (131)
128 PRK12768 CysZ-like protein; Re 27.6 3.1E+02 0.0068 25.1 7.7 27 234-265 9-35 (240)
129 PF01235 Na_Ala_symp: Sodium:a 26.7 5.1E+02 0.011 25.9 9.5 43 79-121 296-338 (416)
130 PF11368 DUF3169: Protein of u 26.7 3.9E+02 0.0084 24.4 8.3 19 254-272 200-218 (248)
131 PRK14984 high-affinity glucona 23.5 6.7E+02 0.015 25.3 9.8 68 375-442 252-320 (438)
132 COG2610 GntT H+/gluconate symp 23.4 7.8E+02 0.017 24.9 12.4 85 356-440 231-319 (442)
133 cd08764 Cyt_b561_CG1275_like N 22.5 1.7E+02 0.0036 26.3 4.8 69 245-315 54-122 (214)
134 PF04133 Vps55: Vacuolar prote 21.4 4.4E+02 0.0095 21.2 7.4 53 11-63 60-113 (120)
135 COG1292 BetT Choline-glycine b 21.3 9.3E+02 0.02 24.9 11.8 25 5-29 85-109 (537)
136 PF05805 L6_membrane: L6 membr 20.9 1.1E+02 0.0024 26.8 3.3 28 378-405 46-73 (195)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-58 Score=446.12 Aligned_cols=403 Identities=37% Similarity=0.642 Sum_probs=358.9
Q ss_pred CcccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 4 DDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 4 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
++|+++|+++.+|.+++++|.|+|+||||+++.||+.|+++++..++++.||..+|.+|.+.++...|+ |+++|.|+++
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~-r~~~Y~dl~~ 112 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK-RRYRYPDLGQ 112 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-cCCChHHHHH
Confidence 367789999999999999999999999999999999999999999999999999999999998888888 8899999999
Q ss_pred HHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchh
Q 013427 84 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 163 (443)
Q Consensus 84 ~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 163 (443)
++||+++++++...+.+.++|+|+.|++..+|++..+.+..|.+.+ ..+.+.|+++++++.+|++++||+++++
T Consensus 113 ~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l~ 186 (437)
T KOG1303|consen 113 AAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSLS 186 (437)
T ss_pred HHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchhH
Confidence 9999999999999999999999999999999999999988776532 2336789999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCcc
Q 013427 164 SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA 243 (443)
Q Consensus 164 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~ 243 (443)
++|..+.++++.+..+.+..++.+..+.+..+.+ .++.++.. ..++++|++.|+|.+|..+|+|+++||+|
T Consensus 187 ~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~---~~~~~~~~---~~f~a~g~iaFaf~gH~v~peIq~tMk~p--- 257 (437)
T KOG1303|consen 187 YLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGG---YLDLGTIP---TVFTALGIIAFAYGGHAVLPEIQHTMKSP--- 257 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCcccC---cccCCCCc---chhhhhhheeeeecCCeeeeehHhhcCCc---
Confidence 9999999999988887777776655444222221 22111111 11899999999999999999999999988
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCchHHHHHHHHHHHHHhHhhccccccchHHHHHHH
Q 013427 244 NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKW 323 (443)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~~~~~ 323 (443)
++|+|++.+++.+++.+|...++.||++|||+++++++.|++ ++.|+...+++++.+|++.+|++..+|+.+.+|++
T Consensus 258 -~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~ 334 (437)
T KOG1303|consen 258 -PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKL 334 (437)
T ss_pred -hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHH
Confidence 679999999999999999999999999999999999999996 58999999999999999999999999999999999
Q ss_pred HHHhcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhhhHhhhhhHHHHHHh
Q 013427 324 ICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQM 403 (443)
Q Consensus 324 ~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Gs~~~~~l~~ilP~l~~~~~~ 403 (443)
...+.++ +. ++....|.+.|+.+++.+.++|+.+|+|+++++++||....++.+++|+++|++.+
T Consensus 335 ~~~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~ 399 (437)
T KOG1303|consen 335 IGVKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIK 399 (437)
T ss_pred hccCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8654332 10 12357899999999999999999999999999999999999999999999999998
Q ss_pred cCCchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 013427 404 NIEAWTRKWVMLRVF-SYVCFIVSTFGLVGSIQGIISA 440 (443)
Q Consensus 404 ~~~~~~~~~~~~~~~-~~~g~~~~v~g~~~si~~~~~~ 440 (443)
|++++..+|+.++.+ .++|++.++...+++++.++.|
T Consensus 400 k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 400 KPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred hhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 889999999999998 7999999999999999998764
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-56 Score=428.78 Aligned_cols=386 Identities=21% Similarity=0.322 Sum_probs=334.1
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH-----
Q 013427 9 TLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD----- 83 (443)
Q Consensus 9 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~----- 83 (443)
|..++..|++|+++|+|+|++|+||+++|++.|.+...+++.++.||++.+++|.++..++.++ ...+|++.++
T Consensus 48 s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~-~~~~y~~~~~~a~~~ 126 (449)
T KOG1304|consen 48 SATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRG-PSLDYAETAESAMEG 126 (449)
T ss_pred chHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ccccHHHHHHHHHcC
Confidence 5789999999999999999999999999999999999999999999999999999776554444 5578888776
Q ss_pred -----HHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCC
Q 013427 84 -----MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPD 158 (443)
Q Consensus 84 -----~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 158 (443)
+.+|+++|.+++..++++++|.|++|++++++.++++.+.. .....+.+.++.+..++.++++++||
T Consensus 127 ~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--------~~~~~s~~~~i~~~~~~~lll~~Ir~ 198 (449)
T KOG1304|consen 127 GPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--------SPGVLSVRLYILIQLPPLLLLNLIRN 198 (449)
T ss_pred CcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--------CCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 56688899999999999999999999999999999998721 11247788999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcC
Q 013427 159 FHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 238 (443)
Q Consensus 159 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 238 (443)
+|.|..+|.++.++.+. .+...+++..++.+ +.++.+...+..+++..+|+.+|||+++..+.|++++||
T Consensus 199 Lk~Lsp~Sl~Anv~~~~----g~~ii~~y~~~~~~------~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk 268 (449)
T KOG1304|consen 199 LKILSPFSLFANVFILV----GLAIIMYYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMK 268 (449)
T ss_pred hHHhhHHHHHHHHHHHH----HHHHHHHHHHhccC------CccccccccchhhhHHHHHHHHHHhccceEEEehhhccc
Confidence 99999999999987763 33334444444433 112222233356788999999999999999999999999
Q ss_pred CCCccccchh---hhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCchHHHHHHHHHHHHHhHhhccccccc
Q 013427 239 SPPPANQTMK---KASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 315 (443)
Q Consensus 239 ~p~~~~~~~~---~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p 315 (443)
+| ++|+ +++..++.+++++|..+|++||++|||++++.++.|+| + +++...+++++.+.++.+||+|++|
T Consensus 269 ~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~pLQ~yv 341 (449)
T KOG1304|consen 269 KP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYPLQFYV 341 (449)
T ss_pred Ch----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHHHHHHHcCchhhhh
Confidence 98 9999 99999999999999999999999999999999999998 5 9999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhhhHhhhh
Q 013427 316 IFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFP 395 (443)
Q Consensus 316 ~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Gs~~~~~l~~ilP 395 (443)
..+++|+.+.+|... .++++..+.+|..++++++++|..+||++.+++++||++++.+++++|
T Consensus 342 ~~eIi~~~i~~k~~~-----------------~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P 404 (449)
T KOG1304|consen 342 PIEIIEPGIRKKFSE-----------------NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFP 404 (449)
T ss_pred hHHHHHHhHHHhcCc-----------------chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHcc
Confidence 999999987665332 113688899999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCC---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013427 396 VEMYFKQMNIE---AWTRKWVMLRVFSYVCFIVSTFGLVGSIQGI 437 (443)
Q Consensus 396 ~l~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~v~g~~~si~~~ 437 (443)
+++++..+.++ ++.++++.+..++++|++.++.|||.|+.++
T Consensus 405 ~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 405 PLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999986443 3345667788888999999999999998763
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=9.6e-57 Score=450.10 Aligned_cols=403 Identities=16% Similarity=0.156 Sum_probs=315.8
Q ss_pred ccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHH
Q 013427 6 FEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMC 85 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~ 85 (443)
+.|+..++.+|++|+++|+|+|+||++|+++||++|++++++++.++.||.+++.+++++. +..+|+|+++++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~-------~~~sY~~la~~~ 130 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT-------NIRTYEGVARVL 130 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCCHHHHHHHH
Confidence 4566789999999999999999999999999999999999999999999999999997642 456999999999
Q ss_pred hcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhH
Q 013427 86 LGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSL 165 (443)
Q Consensus 86 ~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 165 (443)
+||++++++++.+.+.++|+|++|+++.+|.++.+++....+ +... ..+..+..+.++..++++|++++|++++|+++
T Consensus 131 ~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~-~~~~-~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~ 208 (467)
T PTZ00206 131 LGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAP-DFLK-QKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYV 208 (467)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-chhh-hccCcEEeeeehhhhHhhhcccccchHHHHHH
Confidence 999999999999999999999999999999999987532110 0000 00112334445567778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCccccccc--cCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCcc
Q 013427 166 SVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS--GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA 243 (443)
Q Consensus 166 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~ 243 (443)
|.+++.+.+...+.+++.+......+...+.+.. +.++....+...+.+.++|+.+|||.||.+++|+++|||+| +
T Consensus 209 S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~--t 286 (467)
T PTZ00206 209 STIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNR--S 286 (467)
T ss_pred HHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhccc--c
Confidence 9999877664333322222221110000000000 00001111122467899999999999999999999999976 4
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCchHHHHHHHHHHHHHhHhhccccccchHHHHHHH
Q 013427 244 NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKW 323 (443)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~~~~~ 323 (443)
++|+.++...++.++.++|..+|++||+.||++++++++.|+++ .+++...++++++.++++.+||++.+|+|+.+++.
T Consensus 287 ~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~ 365 (467)
T PTZ00206 287 VGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDV 365 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 48999999999999999999999999999999999999999942 45777888999999999999999999999999887
Q ss_pred HHHhcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhhhHhhhhhHHHHHHh
Q 013427 324 ICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQM 403 (443)
Q Consensus 324 ~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Gs~~~~~l~~ilP~l~~~~~~ 403 (443)
+..+ + + + ...+++...+..+.+.+.++|+++||++.+++++||++++.++|++|+++|++..
T Consensus 366 ~~~~--~-----~----~-------~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~ 427 (467)
T PTZ00206 366 IGWD--A-----R----K-------VAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSG 427 (467)
T ss_pred hCCC--c-----c----c-------CchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 5321 1 0 0 0124555566666777889999999999999999999999999999999999842
Q ss_pred ---cCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013427 404 ---NIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 438 (443)
Q Consensus 404 ---~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~~~ 438 (443)
+++.+..+|..++.++++|++.+++||+.|+++.+
T Consensus 428 ~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 428 GFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred CccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 22223334567888899999999999999999876
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=2e-54 Score=431.27 Aligned_cols=402 Identities=24% Similarity=0.376 Sum_probs=327.8
Q ss_pred ccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHH
Q 013427 6 FEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMC 85 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~ 85 (443)
+|+|++++++|++|+++|+|+|+||++|+++|+++|++++++++.++.||.+++.|++++.+ +++ +..+|+|++++.
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~-~~~~y~~l~~~~ 77 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGT-GRRSYGDLARRA 77 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--ccc-cccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999987643 122 678999999999
Q ss_pred hcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhH
Q 013427 86 LGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSL 165 (443)
Q Consensus 86 ~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 165 (443)
+||++++++++++.+.++|.+++|++..+|.+.++++..+.+ ...+++.+.++..++++|++++|++++++++
T Consensus 78 ~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~ 150 (409)
T PF01490_consen 78 FGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLPLSFLKNLKSLRYL 150 (409)
T ss_pred ccccccccccchheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccccccccchhhHHHHH
Confidence 999999999999999999999999999999999998764322 2356778888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCccc-
Q 013427 166 SVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPAN- 244 (443)
Q Consensus 166 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~- 244 (443)
|.++.++.+..+.+.+... ....+.++.-...++..+..+.++++.++|+.+|||.||+++||+++|||+| ++
T Consensus 151 s~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~--~~~ 224 (409)
T PF01490_consen 151 SILGLFSIFYFIVIVVIYI----ISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDP--SKF 224 (409)
T ss_pred hhhhhhccceeeeeeccee----eeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCC--ccc
Confidence 9999888764311111111 1111111100001111123445788999999999999999999999999987 22
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCchHHHHHHHHHHHHHhHhhccccccchHHHHHHHH
Q 013427 245 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWI 324 (443)
Q Consensus 245 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~~~~~~ 324 (443)
+|++|+...++.+++++|..+|..||++||++++++++.|++ ++++...++++++.++++.+||++.+|.++.+++.+
T Consensus 225 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~ 302 (409)
T PF01490_consen 225 KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYPLQLFPARNSLENLL 302 (409)
T ss_pred cccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--CcccccccccccchhhhhhccccccchhHhhhhhhe
Confidence 455599999999999999999999999999999999999999 566899999999999999999999999999999987
Q ss_pred HHhcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhhhHhhhhhHHHHHHhc
Q 013427 325 CEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMN 404 (443)
Q Consensus 325 ~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Gs~~~~~l~~ilP~l~~~~~~~ 404 (443)
.++... ++ + +..+....++.|...|+.++.+++++|..+||++++++++||++++.++|++|+++|++.++
T Consensus 303 ~~~~~~----~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~ 373 (409)
T PF01490_consen 303 FKRAAS----SR-D----SPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFK 373 (409)
T ss_pred eccccc----cc-c----ccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhc
Confidence 542000 00 0 00011233578889999999999999999999999999999999999999999999999877
Q ss_pred CCchhhhHH-----HHHHHHHHHHHHHHHHHHHHH
Q 013427 405 IEAWTRKWV-----MLRVFSYVCFIVSTFGLVGSI 434 (443)
Q Consensus 405 ~~~~~~~~~-----~~~~~~~~g~~~~v~g~~~si 434 (443)
+++++.+|+ ..+.++++|++.++.|+++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 374 RKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred ccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 665443333 245666678888888888876
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=3.5e-48 Score=386.34 Aligned_cols=388 Identities=18% Similarity=0.203 Sum_probs=308.2
Q ss_pred cchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCC---CCCC---CCcccHHH
Q 013427 7 EGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDP---EYGP---GRNRSYLE 80 (443)
Q Consensus 7 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~---~~g~---~~~~~y~~ 80 (443)
+++.+++.+|++++.+|.|+|+||+||+++||++|++.+++.+.++.||.+++.+++.++.+ +++. +...+|.|
T Consensus 45 ~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e 124 (473)
T PLN03074 45 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFE 124 (473)
T ss_pred CchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999987532211 1111 01247899
Q ss_pred HHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCC
Q 013427 81 AVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFH 160 (443)
Q Consensus 81 l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 160 (443)
+++..+||+++.+..+...+++++.|+.|.+..++.+..+.. ..+.+.|++++.++.+|++++|+++
T Consensus 125 ~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i~sl~ 191 (473)
T PLN03074 125 VLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFIPSFH 191 (473)
T ss_pred HHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHccCHH
Confidence 999999999999999999999999999999987776665421 2456788899999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCC
Q 013427 161 NIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSP 240 (443)
Q Consensus 161 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 240 (443)
+++++|.++..+++.....+++.++.+ +.+ ++.+. +...+....+.++++++|+|++|..+||+++|||+|
T Consensus 192 ~l~~~S~ig~~~tl~~av~i~i~~i~~---~~~-----~~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P 262 (473)
T PLN03074 192 NYRIWSFLGLLMTTYTAWYMTIAALSH---GQV-----EGVKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP 262 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---cCC-----CCCCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHHhccCh
Confidence 999999999876553222222222211 111 11110 112345567788889999999999999999999998
Q ss_pred CccccchhhhhHHHHHHHHHHHHhhhhhhhccccCcccc--cccccccccCchHHHHHHHHHHHHHhHhhccccccchHH
Q 013427 241 PPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPG--NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFA 318 (443)
Q Consensus 241 ~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~ 318 (443)
++|+++...+...+...|..+|+.||+.|||++.+ +.+.|+| ++....++++++.++++.+||++..|+.+
T Consensus 263 ----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp---~~~~~~~~~~~~~i~~~~sy~l~~~p~~~ 335 (473)
T PLN03074 263 ----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP---RSGWRDAAVILMLIHQFITFGFACTPLYF 335 (473)
T ss_pred ----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC---CchHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 89999999999999999999999999999998764 5576776 33357899999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhhhHhhhhhHH
Q 013427 319 HFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEM 398 (443)
Q Consensus 319 ~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Gs~~~~~l~~ilP~l~ 398 (443)
..|+....+ + .+....|...|+.+++.++++|+.+|+|+++++++||++++.+++++|+++
T Consensus 336 ~~e~~~~~~--~-----------------~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~ 396 (473)
T PLN03074 336 VWEKAIGVH--D-----------------TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLA 396 (473)
T ss_pred HHHHHhccc--c-----------------cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888865321 0 122478999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC-------------chhhh--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh
Q 013427 399 YFKQMNIE-------------AWTRK--WVMLRVFSYVCFIV-STFGLVGSIQGIISAKL 442 (443)
Q Consensus 399 ~~~~~~~~-------------~~~~~--~~~~~~~~~~g~~~-~v~g~~~si~~~~~~~~ 442 (443)
|++.++++ .+.++ .+.+..+++++.++ .+.|+++|+++++++..
T Consensus 397 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~ 456 (473)
T PLN03074 397 HMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQID 456 (473)
T ss_pred HHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhh
Confidence 99854322 11122 25666666654444 68999999999999875
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=9.5e-47 Score=365.67 Aligned_cols=401 Identities=17% Similarity=0.285 Sum_probs=321.9
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
+++.+.+.+++|+.|+++|+|++++|++|++.|++.|++++.++++++.++.+++.++.++. +..+|++++++
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~-------~~~ty~~l~~~ 75 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS-------GERTYSSLGDL 75 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc-------CCCCHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999998653 22399999999
Q ss_pred HhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchh-HHHHHHHHHHHhhcCCCCCchh
Q 013427 85 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTY-YMLIFGAVQLILSQAPDFHNIQ 163 (443)
Q Consensus 85 ~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~pl~~~~~l~~l~ 163 (443)
.+|+.++....+.......| +++|++.++|.++.+.......++.... |.+++. ++++...++.||++.|++++++
T Consensus 76 ~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~--~~~~~~~ill~~~~~i~pLsl~k~l~~Lk 152 (411)
T KOG1305|consen 76 IFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSH--YLDRNFLILLVLLFIILPLSLLKNLDSLK 152 (411)
T ss_pred HcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccc--cccceeEeehHHHHHHHHHHHHHhhhhHH
Confidence 99999988888888777777 8999999999999777553322221111 344444 6788889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCcc
Q 013427 164 SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA 243 (443)
Q Consensus 164 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~ 243 (443)
+.|.++..+...++++++... .......+ ...++..+....++.+.++|+.+|||.||.|+.|+++||||| +
T Consensus 153 ~tS~~s~~~~~~fv~~vv~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~--s 224 (411)
T KOG1305|consen 153 YTSALSLASVVYFVVLVVYKY----FQGPCALG--RLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDR--S 224 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhcccccC--CcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCc--h
Confidence 999999988876555443332 22111001 111111222223688999999999999999999999999976 6
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCch----HHHHHHHHHHHHHhHhhccccccchHHH
Q 013427 244 NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPY----WLIDLANAFIVIHLVGGYQVYSQPIFAH 319 (443)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~----~~~~~~~~~~~i~~~~sypl~~~p~~~~ 319 (443)
++++.++...+...+.++|..+|.+||+.|||++++|++.+++...+. +....++..+.++.+.++|+..+|+|..
T Consensus 225 ~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~ 304 (411)
T KOG1305|consen 225 VKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMN 304 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 799999999999999999999999999999999999999999853222 2468999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhhhHhhhhhHHH
Q 013427 320 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMY 399 (443)
Q Consensus 320 ~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Gs~~~~~l~~ilP~l~~ 399 (443)
++..+.+.+|+. + ...+..++.....++..+.+.|+++|+++++++++||+++..++|++|+++|
T Consensus 305 l~~~~~~~~~~~----~-----------~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~y 369 (411)
T KOG1305|consen 305 LDELLFPYQPGL----T-----------SFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYY 369 (411)
T ss_pred HHHHhcccCCCC----C-----------CccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhh
Confidence 988875543331 0 0112444555666777899999999999999999999999999999999999
Q ss_pred HHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013427 400 FKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 440 (443)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~~~~~ 440 (443)
++.+++ +.++....+...++++.+++.|+..-+.++..+
T Consensus 370 l~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 370 LKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred heeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998765 333445677777889999999999988888765
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-44 Score=323.41 Aligned_cols=401 Identities=19% Similarity=0.192 Sum_probs=330.8
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC--CcccHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPG--RNRSYLEAV 82 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~--~~~~y~~l~ 82 (443)
+.|.+-|+|..|+.|++-|.=+++||+|...+||. ++..++.++.+++|+..+|++|..+.++ .|+. .+.+|.+++
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~-dGevVrvRdsYvaIA 191 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGE-DGEVVRVRDSYVAIA 191 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCC-CCcEEEeehhHHHHH
Confidence 34667899999999999999999999999999988 9999999999999999999999987543 4431 467999999
Q ss_pred HHHhccc-ccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCc
Q 013427 83 DMCLGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 161 (443)
Q Consensus 83 ~~~~G~~-~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 161 (443)
..+++|. |+..+.+.+.+.+..+|+.|.+..+|.+.+-++.. ..+.+-|+++..+.++|.+++|++|.
T Consensus 192 ~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----------svd~~sWm~i~~a~LLpc~FLk~Lk~ 260 (524)
T KOG4303|consen 192 DFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----------SVDKASWMMITSASLLPCSFLKDLKI 260 (524)
T ss_pred HHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----------CccccchhhhhhHHHhhhHHHHHHHH
Confidence 9999988 45899999999999999999999999998744321 36688999999999999999998888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCC
Q 013427 162 IQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 241 (443)
Q Consensus 162 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 241 (443)
.+.+|.+.+++-++.-++.+.+|+.+... +.+ +.++..-+..+++.++|+++|+|..|..+|++..+|++|
T Consensus 261 VS~lSf~ct~sH~viN~i~v~YCLs~~~d-----W~w---skv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~p- 331 (524)
T KOG4303|consen 261 VSRLSFFCTISHLVINLIMVLYCLSFVSD-----WSW---SKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNP- 331 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccc---eeEEEEEEcccCceEEEEEEEeeeceeeccccccccCCh-
Confidence 88888888887777767777777654321 111 111111122355678999999999999999999999998
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCchHHHHHHHHHHHHHhHhhccccccchHHHHH
Q 013427 242 PANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFE 321 (443)
Q Consensus 242 ~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~~~ 321 (443)
.+|+-.+..+-+..+++-..+|.+||++|++.|+..|.+|+| +.-+...+++++++..+.+||+-.+.+.+.+|
T Consensus 332 ---s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe 405 (524)
T KOG4303|consen 332 ---SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKILVNLFLVVKALLSYPLPFYAAVELLE 405 (524)
T ss_pred ---hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhhhhHHHHHHHHHcCCchHHHHHHHHH
Confidence 889988999999999999999999999999999999999997 45678999999999999999997777777777
Q ss_pred HHHHHhcCCCCccccccccCCCCCCCCCC--chhHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhhhHhhhhhHHH
Q 013427 322 KWICEKFPENGFLNNEFFLKPPLMPAFRW--NPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMY 399 (443)
Q Consensus 322 ~~~~~~~p~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Gs~~~~~l~~ilP~l~~ 399 (443)
+-+-...|+.+ .|.+-+.|. +.+...+|..+++.+.++|+++|+|..+++++|++.+++++|+.|++||
T Consensus 406 ~nlF~g~p~t~---------Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFH 476 (524)
T KOG4303|consen 406 NNLFLGYPQTP---------FPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFH 476 (524)
T ss_pred HhhhcCCCCCC---------CceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHH
Confidence 76554444422 233211222 3344567899999999999999999999999999999999999999999
Q ss_pred HHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013427 400 FKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKL 442 (443)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~~~~~~~ 442 (443)
++...+.-...+......+++.|+..+|.|.+.|-..+++++.
T Consensus 477 l~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~ 519 (524)
T KOG4303|consen 477 LYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAIN 519 (524)
T ss_pred HHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHh
Confidence 9987665555566678888888999999999999999998764
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-32 Score=269.17 Aligned_cols=394 Identities=16% Similarity=0.192 Sum_probs=283.8
Q ss_pred CCCcccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHH
Q 013427 2 MSDDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 81 (443)
Q Consensus 2 m~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l 81 (443)
++++.+.+..++++++.++++|+|+|++|++++..|++++++++++.+.++++|.+++.|+.++.+. +..++.++
T Consensus 3 ~~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~-----~~~~~~~~ 77 (415)
T COG0814 3 SSMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN-----GKASITSL 77 (415)
T ss_pred ccccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CcccHHHH
Confidence 3455666788999999999999999999999999999999999999999999999999999876421 22599999
Q ss_pred HHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCc
Q 013427 82 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 161 (443)
Q Consensus 82 ~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 161 (443)
+++.+||++++++++...+.+++.+.+|.+..+|.+++.++.....+ ..+++...+++..++.++++.++...
T Consensus 78 ~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~-------~~~r~~~~lif~~~~~~l~~~~~~~~ 150 (415)
T COG0814 78 VEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN-------PLPRKLGSLIFALVLAFLSWLGTLAV 150 (415)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC-------CcchHHHHHHHHHHHHHHHHhchhHH
Confidence 99999999999999999999999999999999999999987632211 15677888888888999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCC
Q 013427 162 IQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 241 (443)
Q Consensus 162 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 241 (443)
++..+.+....+..+++ .+.+....-+ .......|..+ .....+...++|+++|||.||+++|++++|||++
T Consensus 151 lk~ts~l~~~~v~~~~~----l~~~~~~~~~--~~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~- 222 (415)
T COG0814 151 LKITSLLVFGKVIYLVL----LVVYLIPHWN--PANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKN- 222 (415)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHhcccC--HHHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccc-
Confidence 99999888777664333 2223222111 11111222111 2445667899999999999999999999999976
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhhhhhccccCccccccccccccc-----------CchHHHHHHHHHHHHHhHhhcc
Q 013427 242 PANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFY-----------EPYWLIDLANAFIVIHLVGGYQ 310 (443)
Q Consensus 242 ~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~-----------~~~~~~~~~~~~~~i~~~~syp 310 (443)
++++.+|+...+..+..++|...++++|..+|+.+.+++++++++. ..+......+++..+.+..++-
T Consensus 223 -~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFl 301 (415)
T COG0814 223 -SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFL 301 (415)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence 2345999999999999999999999999999999999999999731 0122334444444554444433
Q ss_pred ccccchHHHHHHHHHHhcCCCCccccccccCCCCCCCCCCchhHHHHH--HHHHHHHHHHHHhCCChHHHHHHhhhhhhh
Q 013427 311 VYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR--TVYVVSVTAIAMSFPYFNQVLGVIGGVIFW 388 (443)
Q Consensus 311 l~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~ia~~vp~~~~v~~l~Gs~~~~ 388 (443)
-.....++..++.+.+. ++ + +++.....+.-.. ...+......+...|..+.+++.+|+....
T Consensus 302 gv~lg~~~~~~~~~~~~--~~----~---------~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~ 366 (415)
T COG0814 302 GVYLGLFEGLADLFKKS--NS----K---------PGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIP 366 (415)
T ss_pred CchhhHHHhhhHHHHhc--cC----c---------ccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 33334455555554320 00 0 0011122222222 223334666777788888899999999988
Q ss_pred hhHhhhhhHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 013427 389 PLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLV 431 (443)
Q Consensus 389 ~l~~ilP~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~ 431 (443)
.+.++.|...+.+....++...++......+++|+..+.....
T Consensus 367 ~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~ 409 (415)
T COG0814 367 ALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFL 409 (415)
T ss_pred HHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999888877644333332223455555566555554444
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.94 E-value=7.6e-24 Score=207.35 Aligned_cols=353 Identities=17% Similarity=0.199 Sum_probs=249.9
Q ss_pred ccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHH
Q 013427 6 FEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMC 85 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~ 85 (443)
+|.+.+++++.+.++.+|+|+|+||++.+..|.+++.+.+++++..++++..++.|...+.+ +..++.+++++.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~------~~~~~~~~a~~~ 74 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP------EGSSLTSMAEKY 74 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCCCHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999886542 346999999999
Q ss_pred hcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhH
Q 013427 86 LGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSL 165 (443)
Q Consensus 86 ~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 165 (443)
+||+++++..+...+..|+.+++|....++.++++++..... ..+++...+++.++.-.+.... - +.+
T Consensus 75 lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~--------~~~~~~~~~~f~~i~~~iv~~g-~---~~v 142 (394)
T PF03222_consen 75 LGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT--------DLSPWLSSLLFTIIFGGIVYFG-T---KAV 142 (394)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHHHHHHhh-H---HHH
Confidence 999999999999999999999999999999999998763221 2334444444444433333222 1 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCcccc
Q 013427 166 SVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQ 245 (443)
Q Consensus 166 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 245 (443)
..+...++...+......+.. ...+-. .+.+... .+...++...+.++|++++||..|+.+|++.+.+++. +|
T Consensus 143 ~~~n~~lv~~~i~~~~~l~~~-~~p~~~-~~~L~~~--~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~ 215 (394)
T PF03222_consen 143 DRINRVLVFGMIISFIILVVY-LIPHWN-PSNLLDA--PPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---PK 215 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhhcC-HHHhhcc--ccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HH
Confidence 333333333222222222222 111110 0111110 1112334567799999999999999999999999953 48
Q ss_pred chhhhhHHHHHHHHHHHHhh--hhhhhcc---------ccCcccc--cccccccccCchHHHHHHHHHHHHHhHhhcccc
Q 013427 246 TMKKASTMSIITTTIFYLFC--GGFGYAA---------FGDNTPG--NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVY 312 (443)
Q Consensus 246 ~~~~~~~~s~~~~~~~y~~~--g~~gy~~---------fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~ 312 (443)
|.+|++..+..+..++|... .++|-+. -+++..+ ..+.+.. ++.+.....+++-.+++.+||-=.
T Consensus 216 k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv 293 (394)
T PF03222_consen 216 KIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVS--GSPWISILGSIFAFFAIATSFLGV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888854 3333221 1111111 1122222 356778888999999999999877
Q ss_pred ccchHHHHHHHHHHhcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCC-hHHHHHHhhhhhhhhhH
Q 013427 313 SQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLT 391 (443)
Q Consensus 313 ~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~v~~l~Gs~~~~~l~ 391 (443)
...++|.+++.++. ++ ....|........+.+.+.|...|+ |...+++.| ...+.+.
T Consensus 294 ~lgl~d~l~d~~k~--~~-------------------~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~ 351 (394)
T PF03222_consen 294 YLGLFDFLADLFKL--KN-------------------NSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILL 351 (394)
T ss_pred HHHHHHHHHHHHcC--Cc-------------------cccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHH
Confidence 78888888887642 11 0133444455556678889999997 899999999 9999999
Q ss_pred hhhhhHHHHHHhcCCc
Q 013427 392 IYFPVEMYFKQMNIEA 407 (443)
Q Consensus 392 ~ilP~l~~~~~~~~~~ 407 (443)
.++|+++.+|.|++++
T Consensus 352 ~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 352 GILPALMVWKARKRKP 367 (394)
T ss_pred HHHHHHHHHHHHcccC
Confidence 9999999999876554
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.93 E-value=1.3e-23 Score=203.69 Aligned_cols=355 Identities=13% Similarity=0.078 Sum_probs=251.7
Q ss_pred CCcccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHH
Q 013427 3 SDDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 82 (443)
Q Consensus 3 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~ 82 (443)
+++++++.+++++.+.++.+|+|+|+||++.++.|++++++++++++....||..++.|+..+.+ +..++..++
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~------~g~~~~tma 79 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR------IGSSFDTIT 79 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999986542 346899999
Q ss_pred HHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCch
Q 013427 83 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 162 (443)
Q Consensus 83 ~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 162 (443)
++.+||+|+++..++..+..|+.+++|+...+|.+++.++.. .. ..+++.-.++++++.-.+.+.. .|..
T Consensus 80 ~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-~~--------~i~~~~~~llF~~~~~~iv~~g-t~~v 149 (414)
T PRK10483 80 KDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM-SL--------NVPARAAGFGFALLVAFVVWLS-TKAV 149 (414)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc-CC--------CCcHHHHHHHHHHHHHHHHHhh-hhHH
Confidence 999999999999999999999999999999999999998642 10 1344455555555554444432 2444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCc
Q 013427 163 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPP 242 (443)
Q Consensus 163 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 242 (443)
.+++.+-....+. ..+..+.....+-. .+.+.+.+ .+........+.++|++++||..|+++|++.+.+++.
T Consensus 150 d~~n~~l~~~~i~----~f~~~~~~l~~~i~-~~~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d-- 221 (414)
T PRK10483 150 SRMTAIVLGAKVI----TFFLTFGSLLGHVQ-PATLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKD-- 221 (414)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhcC-HHHHhccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcC--
Confidence 4444322222211 11111111111111 01111111 1111223446799999999999999999999998852
Q ss_pred cccchhhhhHHHHHHHHHHHHhh--hhhhhcc---------ccCcccccccccccc-cCchHHHHHHHHHHHHHhHhhcc
Q 013427 243 ANQTMKKASTMSIITTTIFYLFC--GGFGYAA---------FGDNTPGNLLTGFGF-YEPYWLIDLANAFIVIHLVGGYQ 310 (443)
Q Consensus 243 ~~~~~~~~~~~s~~~~~~~y~~~--g~~gy~~---------fg~~~~~~il~~~~~-~~~~~~~~~~~~~~~i~~~~syp 310 (443)
.||.+|++..+..+..++|+.. .+.|-.. -+++. +..+..+.. .++.+......++..+.+.+||-
T Consensus 222 -~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFl 299 (414)
T PRK10483 222 -PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFL 299 (414)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999863 3333222 12211 111122221 13456667888999999999998
Q ss_pred ccccchHHHHHHHHHHhcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCC-hHHHHHHhhhhhhhh
Q 013427 311 VYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWP 389 (443)
Q Consensus 311 l~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~v~~l~Gs~~~~~ 389 (443)
=....++|.+++.++.+ ++ ...|.....+..+.+.+.|.+.|+ |-..++..|.. ...
T Consensus 300 Gv~LGL~d~l~D~~k~~--~~-------------------~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~i 357 (414)
T PRK10483 300 GVTLGLFDYLADLFGFD--DS-------------------AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATI 357 (414)
T ss_pred HHHHHHHHHHHHHhCCC--Cc-------------------cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHH
Confidence 77788889888876432 10 122333344566779999999997 89999999966 678
Q ss_pred hHhhhhhHHHHHHhcC
Q 013427 390 LTIYFPVEMYFKQMNI 405 (443)
Q Consensus 390 l~~ilP~l~~~~~~~~ 405 (443)
+.-++|+++.++.||+
T Consensus 358 l~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 358 WAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8899999999998865
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.93 E-value=3.2e-23 Score=200.72 Aligned_cols=356 Identities=13% Similarity=0.082 Sum_probs=246.4
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
++|.+.+..++.+.++.+|+|+|+||.+-++.|+.++++++++++....||..++.|+..+.+ +..++..++++
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~------~g~~l~tma~~ 79 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP------VGSSFNTITKD 79 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCHHHHHHH
Confidence 466788899999999999999999999999999999999999999999999999999986542 34689999999
Q ss_pred HhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhh
Q 013427 85 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQS 164 (443)
Q Consensus 85 ~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 164 (443)
.+||+|+++..+...+..|+.+++|+...++.+++.++..... ..+.+...++++++.-++.+.. .+...+
T Consensus 80 ~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~--------~i~~~~~~llF~~~~~~~v~~g-t~~vd~ 150 (415)
T PRK09664 80 LIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGY--------HANPRIVGICTAIFVASVLWIS-SLAASR 150 (415)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccC--------CCcHHHHHHHHHHHHHHHHHhc-hhHHHH
Confidence 9999999999999999999999999999999999998541110 1233344455555554444433 233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHH-HHHHHHHHHHHHhhcccceehHhhhhhcCCCCcc
Q 013427 165 LSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEK-MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA 243 (443)
Q Consensus 165 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~ 243 (443)
++.+=....+ +..+..+.....+-. .+.+.+.+..+.... ....+.++|++++||..|+++|++.+.+++.
T Consensus 151 ~nr~l~~~~i----i~f~~~~~~l~~~i~-~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d--- 222 (415)
T PRK09664 151 ITSLFLGLKI----ISFVIVFGSFFFQVD-YSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKR--- 222 (415)
T ss_pred HHHHHHHHHH----HHHHHHHHHHhhccc-HHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCcc---
Confidence 3322221111 111111111111110 011111110010111 2346789999999999999999999998743
Q ss_pred ccchhhhhHHHHHHHHHHHHh--hhhhhhc---------cccCcccccccccccccCchHHHHHHHHHHHHHhHhhcccc
Q 013427 244 NQTMKKASTMSIITTTIFYLF--CGGFGYA---------AFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVY 312 (443)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~y~~--~g~~gy~---------~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~ 312 (443)
.|+.+|++..+..+..++|.. ....|-. ..|++++..+..-....+..+.....+++..+.+.+||-=.
T Consensus 223 ~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv 302 (415)
T PRK09664 223 KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGV 302 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888888888853 3333322 12222222111111111356778888999999999999877
Q ss_pred ccchHHHHHHHHHHhcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCC-hHHHHHHhhhhhhhhhH
Q 013427 313 SQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLT 391 (443)
Q Consensus 313 ~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~v~~l~Gs~~~~~l~ 391 (443)
...++|.+.+.++.+ ++ ...|........+++.+.|.+.|+ |-..++..|.. .+.+.
T Consensus 303 ~LGL~D~l~D~~~~~--~~-------------------~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~ 360 (415)
T PRK09664 303 TLGLFDYLADLFKID--NS-------------------HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWA 360 (415)
T ss_pred HHHHHHHHHHHhCCC--Cc-------------------cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHH
Confidence 788888888876431 10 122333445566779999999997 89999999985 67999
Q ss_pred hhhhhHHHHHHhcC
Q 013427 392 IYFPVEMYFKQMNI 405 (443)
Q Consensus 392 ~ilP~l~~~~~~~~ 405 (443)
-++|+++.++.||+
T Consensus 361 ~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 361 VIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998865
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.92 E-value=1.4e-22 Score=197.45 Aligned_cols=349 Identities=13% Similarity=0.126 Sum_probs=243.4
Q ss_pred chHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhc
Q 013427 8 GTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLG 87 (443)
Q Consensus 8 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G 87 (443)
++.+++.+.+.++.+|+|+|+||.+.+..|.+++++++++++.+..|+.+++.|+..+.+ +..++.+++++.+|
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~------~~~~~~~~a~~~LG 76 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP------ADTGLGTLAKRYLG 76 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CCCCHHHHHHHHhC
Confidence 367899999999999999999999999999999999999999999999999999765431 33589999999999
Q ss_pred ccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 013427 88 KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSV 167 (443)
Q Consensus 88 ~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 167 (443)
|+|+++..+...+..|..+.+|....++.+.+.++....+ ..+.+...+.+.++.-...... .|. +..
T Consensus 77 ~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--------~i~~~~~~l~F~~~~~~iv~~g-~~~---v~~ 144 (403)
T PRK15132 77 RYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--------SMSPTAGVLLFTLVAGGVVCVG-TSS---VDL 144 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--------CCChHHHHHHHHHHHHHHHhcc-HHH---HHH
Confidence 9999999999999999999999999999999888653221 1223334444444332223222 232 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCccccch
Q 013427 168 IAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTM 247 (443)
Q Consensus 168 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~ 247 (443)
+..+.....++..+..+.. ...+-. ...+.+.|. + . .-.+.++|++++||..|+++|++.+.+++. .||.
T Consensus 145 ~n~~L~~~~ii~~~~~~~~-l~p~~~-~~~L~~~~~-~--~--~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~~ 214 (403)
T PRK15132 145 FNRFLFSAKIIFLVVMLAL-MMPHIH-KVNLLTLPL-Q--Q--GLALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRKL 214 (403)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcC-HHHHhcCCc-c--c--cHHHHHHHHHHHHhhCCcccHHHHHHhCcC---HHHH
Confidence 3332222111111111111 111110 011111110 0 0 126789999999999999999999999753 4899
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhccccCcc-----cc-----cccccccc-cCchHHHHHHHHHHHHHhHhhccccccch
Q 013427 248 KKASTMSIITTTIFYLFCGGFGYAAFGDNT-----PG-----NLLTGFGF-YEPYWLIDLANAFIVIHLVGGYQVYSQPI 316 (443)
Q Consensus 248 ~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~-----~~-----~il~~~~~-~~~~~~~~~~~~~~~i~~~~sypl~~~p~ 316 (443)
+|++..+..+..++|+..-......-+.+. ++ +++..+.+ .+..+...+..++..+.+.+||-=....+
T Consensus 215 ~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl 294 (403)
T PRK15132 215 RWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGL 294 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998865444443332221 11 22332221 13467778889999999999997777888
Q ss_pred HHHHHHHHHHhcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCC-hHHHHHHhhhhhhhhhHhhhh
Q 013427 317 FAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFP 395 (443)
Q Consensus 317 ~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~v~~l~Gs~~~~~l~~ilP 395 (443)
+|.+.+.++++ + + ...|.....+..+.+.++|...|+ |...++..|. ..+.+.+++|
T Consensus 295 ~d~l~d~~~~~--~-----~--------------~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP 352 (403)
T PRK15132 295 FDYLADLFQRR--N-----T--------------VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLP 352 (403)
T ss_pred HHHHHHHHccC--c-----c--------------ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 88888876431 1 0 122444556677789999999997 8899999886 5789999999
Q ss_pred hHHHHHHhcCC
Q 013427 396 VEMYFKQMNIE 406 (443)
Q Consensus 396 ~l~~~~~~~~~ 406 (443)
+++.+|.|+++
T Consensus 353 ~~m~~~~r~~~ 363 (403)
T PRK15132 353 SLLVWQSRKQN 363 (403)
T ss_pred HHHHHHHhhcC
Confidence 99999987644
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.92 E-value=2.9e-23 Score=204.79 Aligned_cols=345 Identities=13% Similarity=0.064 Sum_probs=245.1
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhcccccch
Q 013427 14 VAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWA 93 (443)
Q Consensus 14 ~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~~~ 93 (443)
++.++++++|+|++++|.++++.|..++++.+++.+..+.++...+.|...+.. +..++.+.+++.+||+++++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p------~~~~~~~~~~~~~G~~~g~~ 76 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP------GGASFNTIAKDLLGKTGNII 76 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCCCHHHHHHHHhCHHHHHH
Confidence 345679999999999999999999999999999999999999999999876532 34589999999999999999
Q ss_pred hhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHH
Q 013427 94 CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMS 173 (443)
Q Consensus 94 ~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 173 (443)
..+...+.++..+.+|.+..++.+..+++..... ..+.+...+++.+++.++. .+..+....++.+.+...
T Consensus 77 ~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~ 147 (381)
T TIGR00837 77 AGLSLLFVLYILTYAYISGGGSILSRLIGEYFGF--------PWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGK 147 (381)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999987642211 1223333444444444444 445677777776666555
Q ss_pred HHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCccccchhhhhHH
Q 013427 174 FAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTM 253 (443)
Q Consensus 174 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~ 253 (443)
+...+..++..+.+. ++ +++ .|...+.....+...+++...++|.+|.+++++.+|++++ +||.+|++..
T Consensus 148 l~~l~~~ii~~~~~~---~~--~~~--~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~ 217 (381)
T TIGR00837 148 IIAFALVFSGLLPHV---KG--DLL--LDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSILI 217 (381)
T ss_pred HHHHHHHHHHHHhhc---cH--HHH--hcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHHH
Confidence 433222222222110 10 011 1100001123467789999999999999999999999854 4899999999
Q ss_pred HHHHHHHHHHhhhhhhhccccCcccc----------cccccccc-cCchHHHHHHHHHHHHHhHhhccccccchHHHHHH
Q 013427 254 SIITTTIFYLFCGGFGYAAFGDNTPG----------NLLTGFGF-YEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEK 322 (443)
Q Consensus 254 s~~~~~~~y~~~g~~gy~~fg~~~~~----------~il~~~~~-~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~~~~ 322 (443)
+..+++++|..+........+.+.-. ........ .++.+...+..++..+.+.+++.-.....++...+
T Consensus 218 g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~ 297 (381)
T TIGR00837 218 GSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLAD 297 (381)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998766555554332211 11111110 12345677888899999999998888888888777
Q ss_pred HHHHhcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCChH-HHHHHhhhhhhhhhHhhhhhHHHHH
Q 013427 323 WICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN-QVLGVIGGVIFWPLTIYFPVEMYFK 401 (443)
Q Consensus 323 ~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~-~v~~l~Gs~~~~~l~~ilP~l~~~~ 401 (443)
.++++.+ +..|.....+..++..++|.+.|+.. ..++..| +.++.+.+++|++++++
T Consensus 298 ~~~~~~~---------------------~~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~ 355 (381)
T TIGR00837 298 LFKFDDS---------------------KKGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWK 355 (381)
T ss_pred HhCCCcc---------------------cCCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 7643100 11234445555577888899999855 9999999 88899999999999999
Q ss_pred HhcC
Q 013427 402 QMNI 405 (443)
Q Consensus 402 ~~~~ 405 (443)
.||+
T Consensus 356 ~r~~ 359 (381)
T TIGR00837 356 ARKK 359 (381)
T ss_pred HHhc
Confidence 7765
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.89 E-value=3e-20 Score=180.12 Aligned_cols=360 Identities=12% Similarity=0.076 Sum_probs=246.2
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhccccc
Q 013427 12 TAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNA 91 (443)
Q Consensus 12 ~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~ 91 (443)
.....+.++.+|+|+|+||-.....|.+++++.+++++.+++++...+.|...+.++ +..++.+++++.+||+++
T Consensus 23 ~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-----~~~~i~~v~~~~lG~~g~ 97 (443)
T PRK13629 23 TWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-----PSGNITETVEEHFGKTGG 97 (443)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----CCCCHHHHHHHHcChhHH
Confidence 445889999999999999999999999999999999999999999999998754321 346999999999999999
Q ss_pred chhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHHHHHH
Q 013427 92 WACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAV 171 (443)
Q Consensus 92 ~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 171 (443)
.+..+...+..|..+.+|...+.+.+++.+.+... .+ ..+++...+++.+++.......+ +.+-.+..+
T Consensus 98 ~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~----~~---~~~r~l~slifv~~l~~iv~~G~----~~v~kv~~~ 166 (443)
T PRK13629 98 VVITFLYFFAICPLLWIYGVTITNTFMTFWENQLG----FA---PLNRGFVALFLLLLMAFVIWFGK----DLMVKVMSY 166 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----cC---CccHHHHHHHHHHHHHHHHHhhH----HHHHHHHHH
Confidence 99999999999999999999998888886544211 00 12344555555554444443321 333333333
Q ss_pred HHHHHHHHHHHHHHHHHhhCCccccccccCC-----CCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCC------
Q 013427 172 MSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS-----TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSP------ 240 (443)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p------ 240 (443)
.+...+...+..+++-..+=+ ...+.+.| +............++|++++||..|+++|++...+|+.
T Consensus 167 Lv~~~i~~l~~l~~~LiP~w~--~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~ 244 (443)
T PRK13629 167 LVWPFIASLVLISLSLIPYWN--SAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFG 244 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--HHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccc
Confidence 333332333333332211101 00111111 00011112456789999999999999999999985432
Q ss_pred -CccccchhhhhHHHHHHHHHHHHhhhhhhhccccCcc-------ccccc----cccccc-Cc-----hHHHHHHHHHHH
Q 013427 241 -PPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-------PGNLL----TGFGFY-EP-----YWLIDLANAFIV 302 (443)
Q Consensus 241 -~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~-------~~~il----~~~~~~-~~-----~~~~~~~~~~~~ 302 (443)
+...||.+|++..+..+..++|+..-+.+-..-+.+. +.+++ +.++.. +. .+......++..
T Consensus 245 ~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~ 324 (443)
T PRK13629 245 RDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIAL 324 (443)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHH
Confidence 1115889999999999999999877666666554433 12212 222210 11 446777778888
Q ss_pred HHhHhhccccccchHHHHHHHHHH-h-cCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 013427 303 IHLVGGYQVYSQPIFAHFEKWICE-K-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLG 380 (443)
Q Consensus 303 i~~~~sypl~~~p~~~~~~~~~~~-~-~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~ 380 (443)
+++.+||-=....++|.++.+..+ . .++++ + .+.+..+.....++++.+...|..-|++-.+++
T Consensus 325 ~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~ 390 (443)
T PRK13629 325 VAIFKSFFGHYLGTLEGLNGLILKFGYKGDKT---K-----------VSLGKLNTISMIFIMGSTWVVAYANPNILDLIE 390 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---c-----------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 899999988888899999988843 1 11100 0 122345555666777789999999999999999
Q ss_pred HhhhhhhhhhHhhhhhHHHHHHh
Q 013427 381 VIGGVIFWPLTIYFPVEMYFKQM 403 (443)
Q Consensus 381 l~Gs~~~~~l~~ilP~l~~~~~~ 403 (443)
-.|+-...++.|++|...-+|..
T Consensus 391 ~~~gPiia~il~l~P~y~i~kvp 413 (443)
T PRK13629 391 AMGAPIIASLLCLLPMYAIRKAP 413 (443)
T ss_pred HhhhHHHHHHHHHHHHHHHHccH
Confidence 77777778999999998888753
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.85 E-value=7.7e-19 Score=171.77 Aligned_cols=358 Identities=11% Similarity=0.056 Sum_probs=243.1
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhccccc
Q 013427 12 TAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNA 91 (443)
Q Consensus 12 ~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~ 91 (443)
...+.+.++.+|+|+|++|...++.||+..++..++...+++++..++.|..... +. +..++.|++++.|||+++
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~-~~----p~~~i~~~~~~~fGk~~G 81 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSS-KN----PCEDITEVVEEHFGKNWG 81 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC----CCCCHHHHHHHHcCHHHH
Confidence 4578899999999999999999999999999999999999999999999985432 21 246999999999999999
Q ss_pred chhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHHHHHH
Q 013427 92 WACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAV 171 (443)
Q Consensus 92 ~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 171 (443)
.+..+...+..+..+.+|....++.+.+++...... +.+.+....+..+..+-.......+....++.+-+.
T Consensus 82 ~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~--------~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~ 153 (397)
T TIGR00814 82 ILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGT--------APPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVF 153 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 999999999999999999999999999988653221 111222222222222222223344555555444433
Q ss_pred HHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhh----hhcCCCCccccch
Q 013427 172 MSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQ----DTLKSPPPANQTM 247 (443)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~----~~m~~p~~~~~~~ 247 (443)
..+ +..+...+....+-+ .+.+...|.. .....+...+++..++||.+|+++|+.. +|.+||+.+.||.
T Consensus 154 ~~i---i~l~~l~~~lip~~~--~~~L~~~p~~--~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~ 226 (397)
T TIGR00814 154 PLV---LILVLLSLYLIPHWN--GANLTTFPSF--NGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKC 226 (397)
T ss_pred HHH---HHHHHHHHHHHHHcC--HHHHhcCCcc--cchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHH
Confidence 222 222222222211101 0111112211 1234668899999999999999999998 3344333335889
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhccccCcc-----cccc--ccccc-ccCchHHHHHHHHHHHHHhHhhccccccchHHH
Q 013427 248 KKASTMSIITTTIFYLFCGGFGYAAFGDNT-----PGNL--LTGFG-FYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH 319 (443)
Q Consensus 248 ~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~-----~~~i--l~~~~-~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ 319 (443)
+|+...+..+..++|+..-+.+....+.+. ++|+ +..+. ..+..+...+...+..+++.+|+--+...++|.
T Consensus 227 ~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~ 306 (397)
T TIGR00814 227 LRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREG 306 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999877666666665443 1221 22111 013456677778888889999998888899999
Q ss_pred HHHHHHHh-cCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhhhHhhhhhHH
Q 013427 320 FEKWICEK-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEM 398 (443)
Q Consensus 320 ~~~~~~~~-~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Gs~~~~~l~~ilP~l~ 398 (443)
+++++.+. .++++ + .+++..+.....+.++.+...|..-|++-.+++-.|+-..+++.|++|...
T Consensus 307 l~~l~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~ 372 (397)
T TIGR00814 307 LNGIVLNSLKMKGK---K-----------INIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYA 372 (397)
T ss_pred HHHHHHHHhccccc---c-----------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99988432 11100 0 112334445556666778999999999999999777777789999999988
Q ss_pred HHHHh
Q 013427 399 YFKQM 403 (443)
Q Consensus 399 ~~~~~ 403 (443)
-+|..
T Consensus 373 ~~~v~ 377 (397)
T TIGR00814 373 IYKVP 377 (397)
T ss_pred HHccH
Confidence 87753
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.68 E-value=1.3e-13 Score=138.55 Aligned_cols=244 Identities=11% Similarity=0.085 Sum_probs=150.3
Q ss_pred CCCCcccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHH
Q 013427 1 MMSDDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLE 80 (443)
Q Consensus 1 ~m~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~ 80 (443)
||.++||-+.++++...+++++|+|++.+|..+++.|- .+++..++.+++.........|..... |++| ....
T Consensus 1 ~~~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~-P~~G-----G~y~ 73 (438)
T PRK10655 1 MSAKSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFS-RKSG-----GMGG 73 (438)
T ss_pred CCCccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCC-----chHH
Confidence 67778888999999999999999999999999988875 567778888888887777777865443 3344 2344
Q ss_pred HHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHH-HHhhcCCCC
Q 013427 81 AVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ-LILSQAPDF 159 (443)
Q Consensus 81 l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~pl~~~~~l 159 (443)
..++.+||..+++......+.......++.....+++..+.+. +. .....+.+...++. +-..-.+..
T Consensus 74 y~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~-----~~------~~~~~~~~~~~~l~~~~~ln~~g~ 142 (438)
T PRK10655 74 YAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA-----TL------SPVQICLATIGVLWLCTVANFGGA 142 (438)
T ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cc------chHHHHHHHHHHHHHHHHHHHhCH
Confidence 4789999998888888776666555555544445555544321 00 00111221111111 111122333
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCC
Q 013427 160 HNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKS 239 (443)
Q Consensus 160 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 239 (443)
|....++.+.++..+..+++.++..... .+.+... +++. .++.....++..++....|+|.|-......-+|+||
T Consensus 143 ~~~~~i~~i~~~~~l~~l~~~~i~~~~~-~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~ 217 (438)
T PRK10655 143 RITGQISSVTVWGVIIPVVGLSIIGWFW-FSPSLYV---AAWN-PHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVEN 217 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCccccc---CCcC-ccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhC
Confidence 4444444433333322222222222211 1111100 1111 011112345667788899999999999999999999
Q ss_pred CCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 013427 240 PPPANQTMKKASTMSIITTTIFYLFCGGFGY 270 (443)
Q Consensus 240 p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy 270 (443)
| +|+.+|++..+..++.++|.+......
T Consensus 218 P---~r~iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 218 P---ERNVPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred c---cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 489999999999999999997655433
No 17
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.61 E-value=1.5e-12 Score=130.77 Aligned_cols=246 Identities=12% Similarity=0.078 Sum_probs=148.1
Q ss_pred CCCcccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHH
Q 013427 2 MSDDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 81 (443)
Q Consensus 2 m~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l 81 (443)
|+++||-+.++.+...+++++|+|++.+|...++.|-. .++..++.++..........|...+. |+.| ..+.|
T Consensus 1 ~~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~-P~~G--G~y~y--- 73 (435)
T PRK10435 1 MSSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKN-PQQG--GPIAY--- 73 (435)
T ss_pred CCCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhC-CCCC--ChhHH---
Confidence 89999999999999999999999999999999988753 55666666666666666677765543 3333 22334
Q ss_pred HHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCc
Q 013427 82 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 161 (443)
Q Consensus 82 ~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 161 (443)
+++ +||..++.+.............++.+...+++..+.+.. . . ......+.++... .+-+.-.+..|.
T Consensus 74 ~~~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-----~--~--~~~~~~~~~~i~~-~~~~ln~~gvk~ 142 (435)
T PRK10435 74 AGE-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-----N--D--PIPAGIACIAIVW-VFTFVNMLGGTW 142 (435)
T ss_pred HHH-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----C--C--hHHHHHHHHHHHH-HHHHHHHHhHHH
Confidence 566 799888877776555444444555555556665543211 0 0 0111111111111 111222333444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCC
Q 013427 162 IQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 241 (443)
Q Consensus 162 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 241 (443)
...++.+..+..+.. .++..+......++... ..++++. ......++..++....|+|.+-..+...-+|+|||
T Consensus 143 ~~~i~~i~~~~~li~---~~~~~i~g~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP- 216 (435)
T PRK10435 143 VSRLTTIGLVLVLIP---VVGTAIVGWHWFDAATY-AANWNTS-DTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNP- 216 (435)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHcCHHhh-cccccCC-CCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc-
Confidence 444444433332221 11111111111111000 0111111 11234677888999999999999999999999998
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhhhhhccc
Q 013427 242 PANQTMKKASTMSIITTTIFYLFCGGFGYAAF 273 (443)
Q Consensus 242 ~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~f 273 (443)
+|+.+|++..+..++.++|....+......
T Consensus 217 --~r~iPrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 217 --KRTVPLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred --cccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 479999999999999999998776554333
No 18
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.61 E-value=1.2e-12 Score=131.93 Aligned_cols=242 Identities=12% Similarity=0.101 Sum_probs=145.9
Q ss_pred CCCcccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHH
Q 013427 2 MSDDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 81 (443)
Q Consensus 2 m~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l 81 (443)
|+++||-+.+++++..+++++|+|++.+|...++.|. ..+...++.++........+.|..... |+.| ..+.|
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~-P~aG--G~y~~--- 76 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLD-PSPG--GSYAY--- 76 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCC--ChhHH---
Confidence 6778888999999999999999999999999888764 344555555666666666667765443 3344 23444
Q ss_pred HHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHh--hcCCCC
Q 013427 82 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL--SQAPDF 159 (443)
Q Consensus 82 ~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl--~~~~~l 159 (443)
+++.+||...+++.....+.......+......++...+.+.. .+.....++..++++.+ .-.+..
T Consensus 77 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ln~~gv 144 (445)
T PRK10644 77 ARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL------------KDPLVLTITCVVVLWIFVLLNIVGP 144 (445)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------CCcHHHHHHHHHHHHHHHHHHHhch
Confidence 8899999988888777766554444554444445544433210 00111111111111112 122334
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCC
Q 013427 160 HNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKS 239 (443)
Q Consensus 160 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 239 (443)
|....++.+.++..+..++..+...+.. .+..... .+.+ ..+......+..++....|+|.+-......-+|+||
T Consensus 145 k~~~~i~~i~~~~~~i~l~~~~~~~~~~-~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~ 219 (445)
T PRK10644 145 KMITRVQAVATVLALIPIVGIAVFGWFW-FRGETYM---AAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKN 219 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcc---CCcc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC
Confidence 4555554444433332212111111111 1111100 1111 111122345567788899999999999999999999
Q ss_pred CCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 013427 240 PPPANQTMKKASTMSIITTTIFYLFCGGFGY 270 (443)
Q Consensus 240 p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy 270 (443)
| +|+.+|++..+..++.++|.+..+.-.
T Consensus 220 P---~r~iPrai~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 220 P---KRNVPIATIGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred c---ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 489999999999999999998766543
No 19
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.55 E-value=1.4e-11 Score=124.76 Aligned_cols=368 Identities=11% Similarity=0.069 Sum_probs=195.1
Q ss_pred ccchHHHHHHHHHhhhhhhhhhhHHHHHH-hcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 6 FEGTLWTAVAHIITGVIGSGVLSLAWSMA-QLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
||-+.++.++..+++++|+|++.+|.... .+|....++..++.++........+.|..... |+.|. ...+.+++
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~-P~~gG----G~y~y~~~ 75 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKK-PELDG----GVYSYAKA 75 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCC----ChhhhHHh
Confidence 45678999999999999999999998865 44433345556777777777777777766543 22211 23344999
Q ss_pred HhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHH-HHHHhhcCCCCCchh
Q 013427 85 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGA-VQLILSQAPDFHNIQ 163 (443)
Q Consensus 85 ~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~pl~~~~~l~~l~ 163 (443)
.+||..+++......+.......++.....+.+..+.+... + ..+...+.....+ ..+-....+..|..+
T Consensus 76 ~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~---~------~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~ 146 (468)
T TIGR03810 76 GFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG---G------GNNPPSIIGASVLLWCVHFLVLRGVEGAA 146 (468)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---C------CCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999988888887776655556666555555544332110 0 0111111211111 112222234555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccc-cccCCC-CchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCC
Q 013427 164 SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGS-FSGVST-TTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 241 (443)
Q Consensus 164 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 241 (443)
.++.+..+..+..+++.++..+.. .+.+....+ ..+.++ ....+...++..++....|+|.+-.....+.+|.||+
T Consensus 147 ~i~~i~~~~ki~~l~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~- 224 (468)
T TIGR03810 147 FINTITTIAKLVPLFVFIVIGIFA-FKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKR- 224 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCc-
Confidence 655555444433222222222221 111111100 001000 0011223445578888999999999999899999864
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhhhhhccccCcc----ccc-ccccccccCchHHHHHHHHHHHHHhHhhccccccch
Q 013427 242 PANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT----PGN-LLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 316 (443)
Q Consensus 242 ~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~----~~~-il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~ 316 (443)
|+.+|++..+...+.++|....+..+...+++. +++ ...-+.....++...+..+..+++.+.+.--.....
T Consensus 225 ---k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~ 301 (468)
T TIGR03810 225 ---SDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLP 301 (468)
T ss_pred ---ccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988776554443211 111 110000001244555666666666666654433333
Q ss_pred HHHHHHHHHH-hcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhC--CChHHHHHHhhhhhhhhhHhh
Q 013427 317 FAHFEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSF--PYFNQVLGVIGGVIFWPLTIY 393 (443)
Q Consensus 317 ~~~~~~~~~~-~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~v--p~~~~v~~l~Gs~~~~~l~~i 393 (443)
.+....+-.+ ..|+ +..|.|+.+ .+.+-......+.....+.... +.++.+.++.+. ...+.|+
T Consensus 302 sR~~~a~ardg~lP~--~f~k~~~~~---------tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~ 368 (468)
T TIGR03810 302 AEIPLLMAKDKLMPK--YFGKENANG---------APTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVPYL 368 (468)
T ss_pred HHHHHHHHhCCCccH--HHHhhCCCC---------CCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHH
Confidence 3333222211 1231 111111112 2333333322222222211122 235566665443 3468889
Q ss_pred hhhHHHHHHhcC
Q 013427 394 FPVEMYFKQMNI 405 (443)
Q Consensus 394 lP~l~~~~~~~~ 405 (443)
++++.+++.+++
T Consensus 369 ~~~~~~~~l~~~ 380 (468)
T TIGR03810 369 WSAAYQVKLSWR 380 (468)
T ss_pred HHHHHHHHHHHh
Confidence 999888877543
No 20
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.54 E-value=1.9e-11 Score=124.06 Aligned_cols=248 Identities=12% Similarity=0.045 Sum_probs=151.7
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWI-AGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~-~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
+|+-+.+++.+..+++++|+|++.+|....+.|-. ..++..++.++..........|...+...+.| ..+. ..+
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG--G~y~---y~~ 80 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG--GIYA---YAR 80 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--Chhh---hHH
Confidence 45568999999999999999999999998765533 23455677777777777777777655422134 2334 479
Q ss_pred HHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHH-HHHHHhhcCCCCCch
Q 013427 84 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG-AVQLILSQAPDFHNI 162 (443)
Q Consensus 84 ~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~pl~~~~~l~~l 162 (443)
+.+||+.+++......+.......++.....+++..+.+.. .. ..+...+..... ....-..-.+..|..
T Consensus 81 ~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~-~~--------~~~~~~~~~~~~~~~~~~~ln~~Gi~~~ 151 (473)
T TIGR00905 81 EGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLF-GS--------GNPVPSILGASVLLWVFTFLVLRGVRQA 151 (473)
T ss_pred hHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cC--------CCcHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 99999999988888777666666666666666666655421 00 001111111111 111222234455666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCc
Q 013427 163 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPP 242 (443)
Q Consensus 163 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 242 (443)
..++.+..+..+..+++.++..+.. .+.+....+..........+....+..++....++|.+-.......+|+||+
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~-- 228 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFW-FKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNK-- 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc--
Confidence 5665555544443322322222221 1111111111000000111233456778888999999999999999999973
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhhhhhc
Q 013427 243 ANQTMKKASTMSIITTTIFYLFCGGFGYA 271 (443)
Q Consensus 243 ~~~~~~~~~~~s~~~~~~~y~~~g~~gy~ 271 (443)
|+.+|++..+..++.++|.+.......
T Consensus 229 --r~iPrai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 229 --SDVGKATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999977665443
No 21
>TIGR00909 2A0306 amino acid transporter.
Probab=99.50 E-value=1.9e-11 Score=122.80 Aligned_cols=298 Identities=14% Similarity=0.041 Sum_probs=176.7
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
+|+-+.++.++..+++++|+|++.+|......+-...++..++.++..........|..++. ++.| ...+| .++
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~-p~~G--g~y~~---~~~ 75 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAML-PVAG--SPYTY---AYE 75 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC--cceee---HHH
Confidence 56778999999999999999999999776544434456666777777777777777876554 2333 23444 778
Q ss_pred HhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccc-cCCCCccccccchh-HHHHHHHHHHHhhcCCCCCch
Q 013427 85 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYH-REGHEAACEYSDTY-YMLIFGAVQLILSQAPDFHNI 162 (443)
Q Consensus 85 ~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~-~~~i~~~~~~pl~~~~~l~~l 162 (443)
.+||+.+++......+.....+..+....++.+..+++....+ ++......+..... ...+...+++-+...+..|..
T Consensus 76 ~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~ 155 (429)
T TIGR00909 76 AMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKES 155 (429)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHH
Confidence 9999999999988888888888888888888888776531110 00000000000001 111122222222234456666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCc
Q 013427 163 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPP 242 (443)
Q Consensus 163 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 242 (443)
..++.+.....+...++.++.++... +. .++.... .....++..++....++|.+........+|+|||
T Consensus 156 ~~~~~v~~~~~i~~l~~~~~~~~~~~---~~--~~~~~~~----~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p-- 224 (429)
T TIGR00909 156 GKVNDILVVLKVAALLLFAALGAIHF---AS--NNYTPFM----PMGFGGVGAATALVFFAFIGFEAISTAAEEVKNP-- 224 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhC---cH--HhcCCCC----CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCc--
Confidence 66666665555433322222222211 11 1111111 1123456788889999999999999999999998
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhhhhhccccCcc--c--ccccccccccCchHHHHHHHHHHHHHhHhhccccccchHH
Q 013427 243 ANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT--P--GNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFA 318 (443)
Q Consensus 243 ~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~--~--~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~ 318 (443)
+|+.+|++..+..++.++|.............+. + +....-......++...+..+...+..+.+..-......+
T Consensus 225 -~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR 303 (429)
T TIGR00909 225 -ERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSR 303 (429)
T ss_pred -cccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999987654443221111 0 1000000001234455556666666666665443333333
Q ss_pred HH
Q 013427 319 HF 320 (443)
Q Consensus 319 ~~ 320 (443)
.+
T Consensus 304 ~~ 305 (429)
T TIGR00909 304 VL 305 (429)
T ss_pred HH
Confidence 33
No 22
>PRK10746 putative transport protein YifK; Provisional
Probab=99.50 E-value=3.9e-11 Score=121.18 Aligned_cols=366 Identities=12% Similarity=0.018 Sum_probs=195.0
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHHHH-hcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWSMA-QLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
+|+-+.++..+..+++++|+|++..|.... .+|- ..++..++.+++.+.....+.|..... |..| ++.+.++
T Consensus 9 ~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~-P~sG-----g~~~y~~ 81 (461)
T PRK10746 9 QRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLE-PVTG-----SFAVYAH 81 (461)
T ss_pred hccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC-----CHHHHHH
Confidence 455678999999999999999999877644 5554 466677778888888888888876543 3333 5667799
Q ss_pred HHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchh
Q 013427 84 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 163 (443)
Q Consensus 84 ~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 163 (443)
+.+||..++++.....+.......+.....+.+++.+.+. .+.+.+..+..++..-+ -.+..|...
T Consensus 82 ~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-------------~~~~~~~~~~~~~~~~l-N~~gv~~~~ 147 (461)
T PRK10746 82 RYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-------------MAQWIPALIAVALVALA-NLAAVRLYG 147 (461)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------------CchHHHHHHHHHHHHHH-HHHhHHHHH
Confidence 9999999988888888777666666666666665543211 12223332222222212 122233333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhC-Cc--cccccccCCCCch--hHHHHHHHHHHHHHHhhcccceehHhhhhhcC
Q 013427 164 SLSVIAAVMSFAYSFIGFGLGVAKVIGN-GF--VMGSFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 238 (443)
Q Consensus 164 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~-~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 238 (443)
.+........+..++..++..+...... ++ ......+..+..+ .+...++..++....|+|.+-..+...-+|+|
T Consensus 148 ~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~k 227 (461)
T PRK10746 148 EIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAK 227 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 3333222222221112221222111111 11 1011111111111 12245567899999999999999999999999
Q ss_pred CCCccccchhhhhHHHHHHHHHHHHhhhhhhhccccCcccc----cccccccccCchHHHHHHHHHHHHHhHhhcccccc
Q 013427 239 SPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPG----NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQ 314 (443)
Q Consensus 239 ~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~ 314 (443)
|| +|+.+|++..+.....++|.............+..+ +....+.+...+....+.++...+..+.+.--.++
T Consensus 228 nP---~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~ 304 (461)
T PRK10746 228 NP---QVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMY 304 (461)
T ss_pred Ch---hhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 589999999888888888887544433333222111 11111110011223344555555555555433333
Q ss_pred chHHHHHHHHHH-hcCCCCccccccccCCCCCCCCCCchhHHHHHHH-HHHHHHHHHHhCCChHHHHHHhhhhh--hhhh
Q 013427 315 PIFAHFEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTV-YVVSVTAIAMSFPYFNQVLGVIGGVI--FWPL 390 (443)
Q Consensus 315 p~~~~~~~~~~~-~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~ia~~vp~~~~v~~l~Gs~~--~~~l 390 (443)
...+.+..+-.. ..|+ +..+.++.+ .+.+-...+. ..++...+....|+-+.+++..-+++ +..+
T Consensus 305 ~~sR~l~~~a~~g~lP~--~~~~~~~~g---------~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i 373 (461)
T PRK10746 305 SCGRMLYALAKNRQLPA--AMAKVSRHG---------VPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMV 373 (461)
T ss_pred HHHHHHHHHHhCCCcCH--HHHHhCCCC---------CcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 333444333221 1122 111111111 2333332222 22223334444565555555444332 2467
Q ss_pred HhhhhhHHHHHHhcC
Q 013427 391 TIYFPVEMYFKQMNI 405 (443)
Q Consensus 391 ~~ilP~l~~~~~~~~ 405 (443)
.++++.+-|++.||+
T Consensus 374 ~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 374 PWFVILISQLRFRRA 388 (461)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888876543
No 23
>PRK10249 phenylalanine transporter; Provisional
Probab=99.49 E-value=5.6e-11 Score=120.00 Aligned_cols=242 Identities=12% Similarity=0.013 Sum_probs=147.6
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
+|+-+.++..+..+++++|+|++..|-...+.+-...++..++.+++......-+.|...+. |..| ...+.+++
T Consensus 20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~-P~~G-----g~~~y~~~ 93 (458)
T PRK10249 20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEE-PVSG-----SFAHFAYK 93 (458)
T ss_pred hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-----CHHHHHHH
Confidence 35557889999999999999999988765544334577788888888888888888877653 3333 45567899
Q ss_pred HhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhh
Q 013427 85 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQS 164 (443)
Q Consensus 85 ~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 164 (443)
.+|+..++++.....+.......+.....+.+++.+.+. .+.+.+.+++..+.. ..-.+..|..+.
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~~~~l~~-~lN~~gv~~~~~ 159 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD-------------VPTWIWAAAFFIIIN-AVNLVNVRLYGE 159 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-------------CcHHHHHHHHHHHHH-HHHHhcchhhhh
Confidence 999999988888877766555555555555555433211 111222222222222 222334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCc-ccccccc-CCCCch-hHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCC
Q 013427 165 LSVIAAVMSFAYSFIGFGLGVAKVIGNGF-VMGSFSG-VSTTTS-IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 241 (443)
Q Consensus 165 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 241 (443)
+.....+..+..++..++.++.......+ ......+ +++... .+.+.++..++....|+|.+-..+...-+|+|||
T Consensus 160 i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P- 238 (458)
T PRK10249 160 TEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDP- 238 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCH-
Confidence 44333333222222222222222121111 1111111 111000 1223456788899999999999999999999998
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhhhh
Q 013427 242 PANQTMKKASTMSIITTTIFYLFCGGFG 269 (443)
Q Consensus 242 ~~~~~~~~~~~~s~~~~~~~y~~~g~~g 269 (443)
+|+.+|++..+.....++|.......
T Consensus 239 --~k~iPrai~~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 239 --EKSIPKAVNQVVYRILLFYIGSLVVL 264 (458)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999998654433
No 24
>PRK11021 putative transporter; Provisional
Probab=99.49 E-value=1.5e-10 Score=115.50 Aligned_cols=230 Identities=12% Similarity=0.111 Sum_probs=139.4
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhcc
Q 013427 9 TLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGK 88 (443)
Q Consensus 9 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~ 88 (443)
++|++....+++++|+|++.+|-...+.+-...++..++.++..........|...+. |+.| .....+++.+||
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~-P~aG-----G~y~y~~~~~G~ 75 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHF-PHAG-----GPAHFVGMAFGP 75 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-----CHHHhHHHHhCc
Confidence 4789999999999999999999886655435677788888888888888888877654 3334 334458889999
Q ss_pred cccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHHH
Q 013427 89 TNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVI 168 (443)
Q Consensus 89 ~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 168 (443)
+.++.......+.......+......+++..+++. + .... ....+.....+-+.-.+..|....++.+
T Consensus 76 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~-~~~~~~~~~~~~~ln~~Gv~~~~~~~~~ 143 (410)
T PRK11021 76 RLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW-----S------SWQL-LLAELLTLALLWLLNLRGASSSANLQTV 143 (410)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC-----C------CchH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 98888877776543333333333344444443211 0 0111 1111111111212223334444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCccccchh
Q 013427 169 AAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMK 248 (443)
Q Consensus 169 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 248 (443)
..+..+ ..+.. +. ...+....+. .+++.+ ..++.++..++....|+|.+.......-+|+||| +|+.+
T Consensus 144 ---~~~~~~-~i~~~-~~--~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~k~iP 211 (410)
T PRK11021 144 ---IALLIV-ALVVA-IW--WAGDIKPADI-PFPAPG-SIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNP---ERDFP 211 (410)
T ss_pred ---HHHHHH-HHHHH-HH--HHcCCchhcC-CCCCCC-CccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCc---ccccc
Confidence 222111 11111 11 1111111111 111111 1234567788999999999999999999999998 48999
Q ss_pred hhhHHHHHHHHHHHHhhhhh
Q 013427 249 KASTMSIITTTIFYLFCGGF 268 (443)
Q Consensus 249 ~~~~~s~~~~~~~y~~~g~~ 268 (443)
|++..+..++.++|......
T Consensus 212 rAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 212 RALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987654
No 25
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.47 E-value=7.8e-11 Score=118.92 Aligned_cols=364 Identities=12% Similarity=0.029 Sum_probs=195.6
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
+|+-+.++..+..+++++|+|++..|-...+.+-...++..++.++..+....-+.|..... |..| ++.+.+++
T Consensus 11 ~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~-P~aG-----g~y~~~~~ 84 (456)
T PRK10238 11 KRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEE-PVAG-----SFSHFAYK 84 (456)
T ss_pred hccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC-----CHHHHHHH
Confidence 46667899999999999999999988876544434566677778888888787787876543 3333 45555888
Q ss_pred HhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhh
Q 013427 85 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQS 164 (443)
Q Consensus 85 ~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 164 (443)
.+||...+++.....+.....+.+.....++.++.+.+. .+.+.+.+++..+...+. ....|....
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~i~~~~~~~lN-~~gv~~~~~ 150 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------------IPTWVSAAVFFVVINAIN-LTNVKVFGE 150 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------CcHHHHHHHHHHHHHHHH-HHhHHHHHH
Confidence 999999999999998888888887777777776554211 112223222222222111 223444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC-CccccccccCCCCch--hHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCC
Q 013427 165 LSVIAAVMSFAYSFIGFGLGVAKVIGN-GFVMGSFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 241 (443)
Q Consensus 165 ~s~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 241 (443)
++.+..+..+..+++.++.++.....+ +..+....++.+.++ ++...++..+++...|+|.+-......-+|+|||
T Consensus 151 ~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP- 229 (456)
T PRK10238 151 MEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNP- 229 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCh-
Confidence 444444443332222222222211211 111111111100111 1123355677788999999999999999999998
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhhh--hhccccCc--ccccccccccccCchHHHHHHHHHHHHHhHhhccccccchH
Q 013427 242 PANQTMKKASTMSIITTTIFYLFCGGF--GYAAFGDN--TPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIF 317 (443)
Q Consensus 242 ~~~~~~~~~~~~s~~~~~~~y~~~g~~--gy~~fg~~--~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~ 317 (443)
+|+.+|++..+.....+.|...-.. +...+.+- .+++...-+.+....+...+.++..++..+.+..-......
T Consensus 230 --~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~s 307 (456)
T PRK10238 230 --EQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNS 307 (456)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999988888888877653222 11111111 01111111110012334445555555555544433333333
Q ss_pred HHHHHHHHH-hcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHH-HHHHHHhCC--ChHHHHHHhhhhhhhhhHhh
Q 013427 318 AHFEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVS-VTAIAMSFP--YFNQVLGVIGGVIFWPLTIY 393 (443)
Q Consensus 318 ~~~~~~~~~-~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~ia~~vp--~~~~v~~l~Gs~~~~~l~~i 393 (443)
+.+..+-.. ..|+ +..|.++. ..+.+-++....+.. ..++....| .++.+.++.+ .+..+.|.
T Consensus 308 R~l~a~ardg~lP~--~f~kv~~~---------~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~ 374 (456)
T PRK10238 308 RMLFGLAQQGNAPK--ALASVDKR---------GVPVNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALVINWA 374 (456)
T ss_pred HHHHHHHhCCCccH--HHHhhCcC---------CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHH
Confidence 333332211 1221 11111111 123444433333322 222222233 2555666544 34568999
Q ss_pred hhhHHHHHHhc
Q 013427 394 FPVEMYFKQMN 404 (443)
Q Consensus 394 lP~l~~~~~~~ 404 (443)
+|.+.+++.||
T Consensus 375 ~~~~~~l~~r~ 385 (456)
T PRK10238 375 MISLAHMKFRR 385 (456)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 26
>PRK15049 L-asparagine permease; Provisional
Probab=99.45 E-value=1.1e-10 Score=119.02 Aligned_cols=364 Identities=14% Similarity=0.085 Sum_probs=189.2
Q ss_pred ccchHHHHHHHHHhhhhhhhhhhHHHH-HHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 6 FEGTLWTAVAHIITGVIGSGVLSLAWS-MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
|+-+.++..+..+++++|+|++..|.. .+++| ..+++..++.+++....+.-+.|..... |..| ...+-+++
T Consensus 28 r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aG-p~~il~~li~~i~~~~v~~slaELas~~-P~aG-----g~y~y~~~ 100 (499)
T PRK15049 28 KAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAG-PALALVYLICGLFSFFILRALGELVLHR-PSSG-----SFVSYARE 100 (499)
T ss_pred ccCCHhHhHHHhhhccccchHHHhhHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-----CHHHHHHH
Confidence 445688999999999999999998884 55566 4677788888888888888888876543 3333 45566899
Q ss_pred HhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhh
Q 013427 85 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQS 164 (443)
Q Consensus 85 ~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 164 (443)
.+|++.++++.....+.............+..+... +. .+ ..+.+.+.++..++... .-.+..|....
T Consensus 101 ~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~--~~--------~~~~~~~~~~~~~l~~~-iN~~gvk~~~~ 168 (499)
T PRK15049 101 FLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GA--FG--------GVPQWVFALAALTIVGT-MNMIGVKWFAE 168 (499)
T ss_pred HhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc--CC--------CCcHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 999998888888777665444333333333333211 00 00 11222222222222211 11223344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc---ccccCCCCch--hHHHHHHHHHHHHHHhhcccceehHhhhhhcCC
Q 013427 165 LSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMG---SFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKS 239 (443)
Q Consensus 165 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 239 (443)
+.....+..+..++..++..+.......+.+. ......+..+ ++.....+.++....|+|.+-..+...-+|.||
T Consensus 169 i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~kn 248 (499)
T PRK15049 169 MEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKD 248 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcC
Confidence 44333322222222222222221111111111 1111111011 122344556677899999999999999999999
Q ss_pred CCccccchhhhhHHHHHHHHHHHHhhhhhhhccccCcc----cccccccccccCchHHHHHHHHHHHHHhHhhccccccc
Q 013427 240 PPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT----PGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 315 (443)
Q Consensus 240 p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~----~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p 315 (443)
| +|+.+|++..++....++|.............+. .+....-+.....++...+.++..++..+.+.--....
T Consensus 249 P---~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~ 325 (499)
T PRK15049 249 P---QTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYC 325 (499)
T ss_pred h---hhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 4789999999999888888865554333332211 11111111100123344555555556555554333333
Q ss_pred hHHHHHHHHHH-hcCCCCccccccccCCCCCCCCCCchhHHHHHHHHH-HHHHHHHHhCCC--hHHHHHHhhhhhhhhhH
Q 013427 316 IFAHFEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYV-VSVTAIAMSFPY--FNQVLGVIGGVIFWPLT 391 (443)
Q Consensus 316 ~~~~~~~~~~~-~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~ia~~vp~--~~~v~~l~Gs~~~~~l~ 391 (443)
..+.+..+-.. ..|+ +..|.++.+ .+.+-++....+ ++..++....|. ++.+.++.+ .+..+.
T Consensus 326 ~sR~l~a~Ardg~lP~--~f~kv~k~~---------~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~ 392 (499)
T PRK15049 326 TGRILRSMAMGGSAPS--FMAKMSRQH---------VPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIAS 392 (499)
T ss_pred HHHHHHHHHhcCCcCH--HHHHhCCCC---------CCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHH
Confidence 33444333221 1231 111211112 233333332222 222223223332 555666555 445788
Q ss_pred hhhhhHHHHHHhc
Q 013427 392 IYFPVEMYFKQMN 404 (443)
Q Consensus 392 ~ilP~l~~~~~~~ 404 (443)
|++|.+.+++.||
T Consensus 393 y~~~~~~~l~~R~ 405 (499)
T PRK15049 393 WAFIIVCQMRLRK 405 (499)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887654
No 27
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.44 E-value=4.1e-10 Score=114.17 Aligned_cols=242 Identities=15% Similarity=0.069 Sum_probs=144.9
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHH-HHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAW-SMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
+|+-+.++.....+++++|+|++..|- +++++|. ..++..++.+++......-+.|..... + +...+.+.++
T Consensus 19 ~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~-~-----~~~~~~~ya~ 91 (469)
T PRK11049 19 RRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSN-L-----EYKSFSDFAS 91 (469)
T ss_pred hccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc-C-----CCCcHHHHHH
Confidence 455678899999999999999999766 6777776 456666677777766666666654221 1 2335667899
Q ss_pred HHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchh
Q 013427 84 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 163 (443)
Q Consensus 84 ~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 163 (443)
+.+|+..++++.....+.......+.....+.++..+.+. .+.+.+.++...+...+ -.+..|...
T Consensus 92 ~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------------~~~~~~~~~~~~~~~~i-N~~g~~~~~ 157 (469)
T PRK11049 92 DLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------------LSDWVASLAVVLLLLSL-NLATVKMFG 157 (469)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHHHHH-HHHhHHHHH
Confidence 9999999999999888777555555555555555443211 11222222221211111 223344444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhC--Cc--cccccccCCCCch--hHHHHHHHHHHHHHHhhcccceehHhhhhhc
Q 013427 164 SLSVIAAVMSFAYSFIGFGLGVAKVIGN--GF--VMGSFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTL 237 (443)
Q Consensus 164 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~--~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 237 (443)
.++.+.....+..++..++.++.....+ .+ ......+..+.++ ++...++..++....|+|.+-..+...-+|+
T Consensus 158 ~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~ 237 (469)
T PRK11049 158 EMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET 237 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Confidence 5544444333333333333333222111 11 0001111111111 1223457788999999999999999999999
Q ss_pred CCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 013427 238 KSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 270 (443)
Q Consensus 238 ~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy 270 (443)
||| +|+.+|++..+.....+.|.+......
T Consensus 238 knP---~r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 238 KDP---EKSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred cCH---hhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 998 478999998777777888886555443
No 28
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.44 E-value=3.4e-10 Score=114.34 Aligned_cols=242 Identities=16% Similarity=0.124 Sum_probs=152.8
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHH-HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLA-WSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
+|+-+.++..+..+++++|+|++.+| .+.+++|- .+++..++.+++.......+.|...+. |..| ...+.++
T Consensus 11 ~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~-P~~G-----g~~~~~~ 83 (452)
T TIGR01773 11 PNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVAN-PDTG-----SFSTYAD 83 (452)
T ss_pred hCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC-----CHHHHHH
Confidence 45557899999999999999999999 66777775 577788888888888888888876543 3333 4566789
Q ss_pred HHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchh
Q 013427 84 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 163 (443)
Q Consensus 84 ~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 163 (443)
+.+||...+++.....+.....+.+.....++.++.+.+. .+.+.+.++...+. -+.-.+..|...
T Consensus 84 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~~~~~~~-~~~n~~gv~~~~ 149 (452)
T TIGR01773 84 DAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------------IPLWLFSLILTIVL-TLTNLYSVKSYG 149 (452)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------CcHHHHHHHHHHHH-HHHHHHhcchhh
Confidence 9999999999988888877777777777776666654311 11122222222111 112223345555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc--cccccCCCCch--hHHHHHHHHHHHHHHhhcccceehHhhhhhcCC
Q 013427 164 SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVM--GSFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKS 239 (443)
Q Consensus 164 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 239 (443)
.+.....+..+..++..++..+.......+.. ....++.+.++ ++...++..++....|+|.+........+|+||
T Consensus 150 ~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~ 229 (452)
T TIGR01773 150 EFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSN 229 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcC
Confidence 55444443333222222222222112111111 00111111111 122345778999999999999999999999999
Q ss_pred CCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 013427 240 PPPANQTMKKASTMSIITTTIFYLFCGGFGY 270 (443)
Q Consensus 240 p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy 270 (443)
| +|+.+|++..+.....++|........
T Consensus 230 P---~r~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 230 P---IKSITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred h---hhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 8 479999998888888888887544433
No 29
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.43 E-value=4.1e-10 Score=114.63 Aligned_cols=242 Identities=12% Similarity=0.073 Sum_probs=150.7
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHH-HHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWS-MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
+|+-+.++..+..+++++|+|++..|.. .+++|-...++..++.+++......-+.|......... -.|.+.++
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~g-----G~~~~~~~ 75 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVS-----GSFATYAS 75 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CCHHHHHH
Confidence 4666888999999999999999987654 55666333355677777777777777788765442122 25677899
Q ss_pred HHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchh
Q 013427 84 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 163 (443)
Q Consensus 84 ~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 163 (443)
+.+|+..++++.....+.....+.+.....+..+..+.+ ..+...+..+..++. -+.-.+..|...
T Consensus 76 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~-~~in~~gv~~~~ 141 (478)
T TIGR00913 76 RFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAIFYVFI-VIINLFGVKGYG 141 (478)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHHHH-HHHHHhcchHHH
Confidence 999999999998888888777777777776666653211 111223332222211 122234455555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc--cc------ccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhh
Q 013427 164 SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMG--SF------SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQD 235 (443)
Q Consensus 164 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 235 (443)
.++.......+..++..++..+.....+.+.+. .. .++++........++..++....|+|.+-......-+
T Consensus 142 ~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~ 221 (478)
T TIGR00913 142 EAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAG 221 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 555444333332222222222222221111110 00 0111110011245677888899999999999999999
Q ss_pred hcCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 013427 236 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 268 (443)
Q Consensus 236 ~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~ 268 (443)
|+||| +|+.+|++..+..++.++|....+.
T Consensus 222 E~knP---~r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 222 EAANP---RKSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred hhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 5899999999999999999986543
No 30
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.42 E-value=5e-10 Score=113.22 Aligned_cols=240 Identities=15% Similarity=0.065 Sum_probs=143.7
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHHHH-hcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWSMA-QLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
+|+-+.++..+..+++++|+|++.+|.... .+|- ..++..++.++........+.|...+. |..| ...+.++
T Consensus 8 ~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~-P~~G-----g~y~y~~ 80 (457)
T PRK10580 8 KRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHN-PAAS-----SFSRYAQ 80 (457)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-----CHHHHHH
Confidence 566688999999999999999999987744 4554 567788888888888888888877543 3333 3444589
Q ss_pred HHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchh
Q 013427 84 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 163 (443)
Q Consensus 84 ~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 163 (443)
+.+||..++++.....+.....+.......+.++..+.+. .+...+.+...++ +-..-.+..|...
T Consensus 81 ~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l-~~~ln~~gv~~~~ 146 (457)
T PRK10580 81 ENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT-------------VPHWIWVLSVVLI-ICAVNLMSVKVFG 146 (457)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CChHHHHHHHHHH-HHHHHHccchhHH
Confidence 9999999988888777665554554444444444433211 1122232222222 2222233445555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HhhCCcccccc-ccCCCCch-hHHHHHHHHHHHHHHhhcccceehHhhhhhcC
Q 013427 164 SLSVIAAVMSFAYSFIGFGLGVAK---VIGNGFVMGSF-SGVSTTTS-IEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 238 (443)
Q Consensus 164 ~~s~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 238 (443)
.+........+..+++.++.++.- ...+....... ..+++... .+...++..++....|+|.+........+|+|
T Consensus 147 ~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~k 226 (457)
T PRK10580 147 ELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAK 226 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhc
Confidence 554443333332222221121111 11111000000 00111011 12234567788999999999999999999999
Q ss_pred CCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 013427 239 SPPPANQTMKKASTMSIITTTIFYLFCGGF 268 (443)
Q Consensus 239 ~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~ 268 (443)
|| +|+.+|++..+.....++|......
T Consensus 227 nP---~k~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 227 DP---EKSIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred Ch---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 4789999998888778888765443
No 31
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.41 E-value=2.2e-10 Score=117.96 Aligned_cols=371 Identities=10% Similarity=0.022 Sum_probs=202.7
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHHH--HhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWSM--AQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 82 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af--~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~ 82 (443)
+|+-+.++..+..+++++|+|++.+|-.. ..+|-. .++.+++.++.+........|..... |+.| ..+.| .
T Consensus 27 ~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~-P~sG--g~Y~y---~ 99 (557)
T TIGR00906 27 KRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARV-PKAG--SAYLY---S 99 (557)
T ss_pred hhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC--cceee---H
Confidence 45667899999999999999999998654 346643 55566677777777777777766543 3445 45666 5
Q ss_pred HHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhcc-ccC---CCCccccccch-hHHHHHHHHHHHhhcCC
Q 013427 83 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCY-HRE---GHEAACEYSDT-YYMLIFGAVQLILSQAP 157 (443)
Q Consensus 83 ~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~-~~~---~~~~~~~~~~~-~~~~i~~~~~~pl~~~~ 157 (443)
++.+|+...+++.....+.....+.+.....++++..++..... ... +... .....+ ....+..++++-+...+
T Consensus 100 ~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~-~~l~~~~~~~a~~ii~l~~~ln~~ 178 (557)
T TIGR00906 100 YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNY-DGLAEYPDFFAVCLILLLAVLLSF 178 (557)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccC-CcccccchHHHHHHHHHHHHHHHh
Confidence 67799999999999888888777777777777777776642110 000 0000 001111 11111111222223345
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCch--hHHHHHHHHHHHHHHhhcccceehHhhhh
Q 013427 158 DFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQD 235 (443)
Q Consensus 158 ~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 235 (443)
..|..++++.+.....+..+++.++.++... +..+.......+.++ +....+++.+.....|+|.|-..+...-+
T Consensus 179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~---~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~ae 255 (557)
T TIGR00906 179 GVKESAWVNKIFTAINILVLLFVIIAGFTKA---DVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGE 255 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHhhC---CchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHH
Confidence 6666666666655554433333333333221 111111000000001 11235677888999999999999999999
Q ss_pred hcCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhccccCc---ccccccccccccCchHHHHHHHHHHHHHhHhhcccc
Q 013427 236 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN---TPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVY 312 (443)
Q Consensus 236 ~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~---~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~ 312 (443)
|.||| +|+.+|++..+..+++++|..+...-...-..+ .++.+...+.....++...+..+.....++.+....
T Consensus 256 E~knP---~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~ 332 (557)
T TIGR00906 256 EVKNP---QRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGG 332 (557)
T ss_pred hccCc---cccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 478999999999999999997765433322211 111111111111234555555555555555554333
Q ss_pred ccchHHHHHHHHHH-hcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhhhH
Q 013427 313 SQPIFAHFEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLT 391 (443)
Q Consensus 313 ~~p~~~~~~~~~~~-~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Gs~~~~~l~ 391 (443)
+....+.+..+-.. ..|+ +..|.| | +...+.+-.+... +++.+++.. .+++.+.++.. .+..+.
T Consensus 333 ~~~~sRil~amarDGlLP~--~fakv~----~----r~~tP~~Ail~~~--iv~~il~~~-~~~~~l~~l~s--ig~ll~ 397 (557)
T TIGR00906 333 MFPLPRVIYAMARDGLLFK--WLAQIN----S----KTKTPINATVVSG--AIAALMAFL-FDLKALVDLLS--IGTLLA 397 (557)
T ss_pred HHHHHHHHHHHHcCCCccH--HHhccC----C----CCCCcHHHHHHHH--HHHHHHHHH-cCHHHHHHHHH--HHHHHH
Confidence 33433333333211 1121 111111 0 1112233222222 222333333 35666666543 334788
Q ss_pred hhhhhHHHHHHhc
Q 013427 392 IYFPVEMYFKQMN 404 (443)
Q Consensus 392 ~ilP~l~~~~~~~ 404 (443)
|.++++..+..|+
T Consensus 398 y~lv~~~~l~lR~ 410 (557)
T TIGR00906 398 YSLVAACVLILRY 410 (557)
T ss_pred HHHHHHHHHHhhc
Confidence 9998877776653
No 32
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.41 E-value=4.6e-11 Score=117.01 Aligned_cols=238 Identities=15% Similarity=0.140 Sum_probs=151.9
Q ss_pred cchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHh
Q 013427 7 EGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCL 86 (443)
Q Consensus 7 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~ 86 (443)
|-+.+|..+.+.++++|+|++.+|...++.+-..+.+..++.++........+.+..+++ +..+..|..++.+
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~-------p~~~~~~~~~~~~ 74 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKF-------PEKNFSEILSKYL 74 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHh
Confidence 457789999999999999999999998876656677777888888888888888877554 2237889999999
Q ss_pred cccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHH-HHHHHHHHhhcCCCCCchhhH
Q 013427 87 GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYML-IFGAVQLILSQAPDFHNIQSL 165 (443)
Q Consensus 87 G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~ 165 (443)
||+.+.+..+....+....+.......++.+.... .+ +. ..+.+ +..++..-....+.++....+
T Consensus 75 Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~--------~t--p~~~~~l~~l~~~~~~~~~Gi~~i~r~ 140 (359)
T TIGR00912 75 GKILGRLLSILFILYFFLIAAYLIRIFADFIKTYL----LP--------RT--PIIVIIILIIIVSIYIVRKGIEVLLRT 140 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC--------CC--CHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 99999888887777766666665656666655432 11 11 12222 222222222334556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHH-HHHHHhhcccceehHhhhhhcCCCCccc
Q 013427 166 SVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQA-LGDIAFAYPYSLILIEIQDTLKSPPPAN 244 (443)
Q Consensus 166 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~faf~~~~~~~~i~~~m~~p~~~~ 244 (443)
+.+-....+... .++.... ..++.+. .++ .|-.+ ++..+...+ .+...++|.+.........++|||
T Consensus 141 ~~i~~~~~i~~~--~~il~~~-~~~~~~~-~~l--~P~~~--~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~---- 208 (359)
T TIGR00912 141 AEILLIIFLILF--ILVLILL-APKLGNI-KNL--LPVLE--NGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK---- 208 (359)
T ss_pred HHHHHHHHHHHH--HHHHHHH-hcccccH-HHc--cCccc--cCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh----
Confidence 555544333210 0111111 1111100 011 12111 112333333 346778888888888888888876
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhccccCcc
Q 013427 245 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 277 (443)
Q Consensus 245 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~ 277 (443)
|+.+|+...+..++.++|...-......+|.+.
T Consensus 209 ~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 209 KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 889999999999999999988777777777644
No 33
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.38 E-value=7.3e-10 Score=112.46 Aligned_cols=245 Identities=14% Similarity=0.075 Sum_probs=142.4
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHHH-HhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWSM-AQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
+|+-+.++..+..+++++|+|++..|-.. +.+|-...++..++.+++......-+.|...+. |+.| .+...++
T Consensus 13 ~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~-P~aG-----G~y~y~~ 86 (471)
T PRK11387 13 KRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAM-PETG-----AFHVYAA 86 (471)
T ss_pred hhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-----CHHHHHH
Confidence 45567899999999999999999887775 566644456667777777887777777776543 3333 4456688
Q ss_pred HHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchh
Q 013427 84 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 163 (443)
Q Consensus 84 ~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 163 (443)
+.+|+..++++.....+.....+.......+..++.+. + ..+.+.+.+++.++.. +.-.+..|...
T Consensus 87 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-----p--------~~~~~~~~~~~~~~~~-~in~~gvk~~~ 152 (471)
T PRK11387 87 RYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWF-----P--------QVPVWPWCLLFCALIF-GLNVVSTRFFA 152 (471)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----C--------cCcHHHHHHHHHHHHH-HHHHHhHHHHH
Confidence 99999988888877777665555444444433332211 1 0111222222222222 22223334444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-----cccccccCCCCch-hHHHHHHHHHHHHHHhhcccceehHhhhhhc
Q 013427 164 SLSVIAAVMSFAYSFIGFGLGVAKVIGNGF-----VMGSFSGVSTTTS-IEKMWLVAQALGDIAFAYPYSLILIEIQDTL 237 (443)
Q Consensus 164 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 237 (443)
.++.......+..++..++..+.......+ ..+...++.+.+. .+...++..++....|+|.+-..+...-+|+
T Consensus 153 ~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 232 (471)
T PRK11387 153 EGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET 232 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 333332222222222222222221111000 0000111110000 1123456677788899999999999999999
Q ss_pred CCCCccccchhhhhHHHHHHHHHHHHhhhhhhhcc
Q 013427 238 KSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA 272 (443)
Q Consensus 238 ~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~ 272 (443)
||| +|+.+|++..+...+.++|....+.....
T Consensus 233 knP---~r~iPrAi~~~~~~~~~~y~~~~~~~~~~ 264 (471)
T PRK11387 233 ENP---AKVIPVAIRTTIARLVIFFVGTVLVLAAL 264 (471)
T ss_pred cCh---hhHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 998 48899999999999999998776544333
No 34
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.37 E-value=4.2e-10 Score=112.92 Aligned_cols=289 Identities=17% Similarity=0.144 Sum_probs=168.8
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHH-HHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhc
Q 013427 9 TLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVT-LFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLG 87 (443)
Q Consensus 9 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~-~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G 87 (443)
++|++....+++++|+|++..| ...+.|.. .++..++.+.+. ........|..++. ++.| ...+..++.+|
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~-p~~G-----G~y~~~~~~~g 73 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAY-PSAG-----GIYVWVSRAFG 73 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTT-TSST-----THHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccC-CCcC-----eeeehhhhccc
Confidence 5789999999999999999999 66666654 555555555555 45666666665543 3333 44566899999
Q ss_pred ccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHH--HHHHHHHHhhcCCCCCchhhH
Q 013427 88 KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYML--IFGAVQLILSQAPDFHNIQSL 165 (443)
Q Consensus 88 ~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~pl~~~~~l~~l~~~ 165 (443)
|+.+++......+.......++.....+.+...+..... .++....+ +..+...-..-.+..|..+++
T Consensus 74 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~ 143 (426)
T PF13520_consen 74 PFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLN----------PSPWPQFLIAIILILLFTLLNLLGIKLSGKI 143 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGT----------CSHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred ccchhcccceeEEEeeccccccccchhhhhhhccccccc----------cccchheeeeecccccceEeeechhhhhhhh
Confidence 999999999998888888878877777777665421000 01111121 111112222233445555666
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhCCccc--ccc-ccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCC
Q 013427 166 SVIAAVMSF-AYSFIGFGLGVAKVIGNGFVM--GSF-SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 241 (443)
Q Consensus 166 s~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 241 (443)
+.......+ ..+++.++..+.....+.... ... +..|+ ..+ ..+.+++...|+|.+-.......+|+||
T Consensus 144 ~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~G~e~~~~~~~E~k~-- 216 (426)
T PF13520_consen 144 QNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS--GWP---GFLAGFSVAFFAFSGFEAIASLAEENKN-- 216 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCS--SSS---HHHHHHHHHGGGGTTTTHHHHGGGGSSS--
T ss_pred hhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCc--ccc---chhhHHHHHHhhcccccccccccccccc--
Confidence 555554444 222222223333221111110 000 11121 111 2568888899999999999999999774
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhhhhhccccCccc---cccc---ccc-cccCchHHHHHHHHHHHHHhHhhcccccc
Q 013427 242 PANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP---GNLL---TGF-GFYEPYWLIDLANAFIVIHLVGGYQVYSQ 314 (443)
Q Consensus 242 ~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~---~~il---~~~-~~~~~~~~~~~~~~~~~i~~~~sypl~~~ 314 (443)
|+.+|++..+..++.++|.+....-....+++.. ++.. ..+ .....++...+..+...+..+.+......
T Consensus 217 ---k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 293 (426)
T PF13520_consen 217 ---KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIF 293 (426)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhc
Confidence 7899999999999999999886665555544221 1210 000 00012355566666666666666655555
Q ss_pred chHHHHHHHHH
Q 013427 315 PIFAHFEKWIC 325 (443)
Q Consensus 315 p~~~~~~~~~~ 325 (443)
...+.+..+-.
T Consensus 294 ~~sR~l~~~a~ 304 (426)
T PF13520_consen 294 GASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHHH
T ss_pred chhhccccccc
Confidence 55555555543
No 35
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.35 E-value=8.5e-10 Score=111.25 Aligned_cols=241 Identities=12% Similarity=0.127 Sum_probs=142.0
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHHH-HhcCcc-HHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWSM-AQLGWI-AGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 82 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~-~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~ 82 (443)
+|+-+.+++....++.++|+|++..|... +..|-. ..++..++.+++.........|..... |+.| ..+.| .
T Consensus 7 ~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~-P~~G--G~y~y---~ 80 (445)
T PRK11357 7 QRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAY-PENG--ADYVY---L 80 (445)
T ss_pred cccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC--Cceee---H
Confidence 57778999999999999999999999874 455643 345556677777777777777776543 3444 45666 5
Q ss_pred HHHhcccccchhhHHHHH-HhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCc
Q 013427 83 DMCLGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 161 (443)
Q Consensus 83 ~~~~G~~~~~~~~i~~~~-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 161 (443)
++.+||...++....... ........+....++++....+. . .... ....+.....+-..-.+..|.
T Consensus 81 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~----------~-~~~~-~~~~~~~~~~~~~ln~~gv~~ 148 (445)
T PRK11357 81 KNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI----------D-PLLG-KFIAAGLIIAFMLLHLRSVEG 148 (445)
T ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------c-hHHH-HHHHHHHHHHHHHHHHhhhhH
Confidence 688999887777665442 22333444555555555432110 0 0000 111111111122222344555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCC
Q 013427 162 IQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 241 (443)
Q Consensus 162 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 241 (443)
...++.+..+..+..+++.++..+.. ..+........ .+ ........++..++....|+|.+-.......+|+|||
T Consensus 149 ~~~v~~~~~~~~~~~l~~~ii~g~~~-~~~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P- 224 (445)
T PRK11357 149 GAAFQTLITIAKIIPFTIVIGLGIFW-FKAENFAAPTT-TA-IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNP- 224 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccccCCCc-cc-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCc-
Confidence 55555555444433222222222221 11111110000 00 0011123456678889999999999999999999998
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhhhh
Q 013427 242 PANQTMKKASTMSIITTTIFYLFCGGFG 269 (443)
Q Consensus 242 ~~~~~~~~~~~~s~~~~~~~y~~~g~~g 269 (443)
+|+.+|++..+..++.++|.+.....
T Consensus 225 --~r~iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 225 --GKTMPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred --cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999766543
No 36
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.34 E-value=1.2e-10 Score=113.81 Aligned_cols=365 Identities=13% Similarity=0.120 Sum_probs=208.2
Q ss_pred CcccchHHHHHHHHHhhhhhhhhhhHHHHHHhcC--ccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHH
Q 013427 4 DDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLG--WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 81 (443)
Q Consensus 4 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l 81 (443)
.+||-+.++++..+++.++|+|++.-|....+.+ ...++++.+++++++......-.|..... +++| ....|
T Consensus 10 ~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~i-pksG--gd~ay--- 83 (479)
T KOG1287|consen 10 LKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSI-PKSG--GDYAY--- 83 (479)
T ss_pred ccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccc-cCCC--cchhh---
Confidence 4677789999999999999999999999976554 45677778889999999999888876543 4455 33455
Q ss_pred HHHHhcccccchhhHHHHHHhhhhh-HHHHHHHHhh-HHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCC
Q 013427 82 VDMCLGKTNAWACSFFVHVGLYGTA-IAYTVTSAIS-MRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDF 159 (443)
Q Consensus 82 ~~~~~G~~~~~~~~i~~~~~~~g~~-~~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 159 (443)
..++||+.........-.+....+. ..+.+..+++ +++..+ .|. .++...-. .+..++-+....|.
T Consensus 84 i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~c~----------~p~~~~~l-la~~~l~~lt~~n~ 151 (479)
T KOG1287|consen 84 ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-LCD----------VPRVASKL-LAAALLVLLTLINS 151 (479)
T ss_pred HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-CCC----------CchHHHHH-HHHHHHHHHHHHhh
Confidence 6788999877666555555555554 7777777777 555544 232 22222222 22223333334556
Q ss_pred CchhhHHHHHHHHHHHHHHHHH---HHHHHHHhhCCccccccccCCCCch-hHHHHHHHHHHHHHHhhcccceehHhhhh
Q 013427 160 HNIQSLSVIAAVMSFAYSFIGF---GLGVAKVIGNGFVMGSFSGVSTTTS-IEKMWLVAQALGDIAFAYPYSLILIEIQD 235 (443)
Q Consensus 160 ~~l~~~s~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 235 (443)
.+.++.+.+..+.+..-++... +..++....++. ++..+.+ .++ ..+..+...++=.-.|||.+-..+-.+-+
T Consensus 152 ~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~--~~~~~~~-f~g~~~~~g~i~lafysglfa~~GWd~lN~vte 228 (479)
T KOG1287|consen 152 FSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGST--QNFENSE-FEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTE 228 (479)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEeccc--ccccccc-cccCcCchHHHHHHHHHhhhcccCchhhccchH
Confidence 6667666666555554333333 233332222211 1111110 111 12234466788888999999999999999
Q ss_pred hcCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhccccCcc--cc-ccccccccc-CchHHHHHHHHHHHHHhHhhccc
Q 013427 236 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT--PG-NLLTGFGFY-EPYWLIDLANAFIVIHLVGGYQV 311 (443)
Q Consensus 236 ~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~--~~-~il~~~~~~-~~~~~~~~~~~~~~i~~~~sypl 311 (443)
|+||| +|+++|+...++.++++.|+++=+..+.+-..+. .+ .+-..+.+. -+++. -++.++..++.+.+.--
T Consensus 229 EiknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~ 304 (479)
T KOG1287|consen 229 EIKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNS 304 (479)
T ss_pred hhcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhh
Confidence 99998 5899999999999999999987665554432111 11 111111100 01222 33444444444444433
Q ss_pred cccchHHHHHHHHH-HhcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhhh
Q 013427 312 YSQPIFAHFEKWIC-EKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPL 390 (443)
Q Consensus 312 ~~~p~~~~~~~~~~-~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Gs~~~~~l 390 (443)
.++...+.+..... ...|+. ....+. +..++.- ....-....++..+.+|+..+++..+=.-....
T Consensus 305 ~ifs~SR~~~~~areG~LP~~--~s~i~~--------~~~TP~~---allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~ 371 (479)
T KOG1287|consen 305 VIFSSSRLFYAGAREGHLPAF--FSMISV--------RRFTPRP---ALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFR 371 (479)
T ss_pred HHHHHHHHHHHHHHccCccHH--HHhhcC--------CCCCChH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 23322222222211 111220 000000 0001111 111222233444456688888888876666667
Q ss_pred HhhhhhHHHHHHhcCC
Q 013427 391 TIYFPVEMYFKQMNIE 406 (443)
Q Consensus 391 ~~ilP~l~~~~~~~~~ 406 (443)
.+.+=++++++.++++
T Consensus 372 ~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 372 GLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 7777788888875544
No 37
>PRK10836 lysine transporter; Provisional
Probab=99.31 E-value=5.4e-09 Score=106.60 Aligned_cols=244 Identities=13% Similarity=0.091 Sum_probs=134.7
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHH-HHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAW-SMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
+|+-+.++..+..+++++|+|++.+|- +.+++|-...++..++.+++......-+.|...+. |+.| .....++
T Consensus 14 ~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~-P~sG-----g~y~y~~ 87 (489)
T PRK10836 14 RRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYM-PVSG-----SFATYGQ 87 (489)
T ss_pred cccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC-----CHHHHHH
Confidence 456678999999999999999999997 55566654467788888888888888888877654 3344 3345577
Q ss_pred HHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchh
Q 013427 84 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 163 (443)
Q Consensus 84 ~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 163 (443)
+.+|+..++++.....+.... +.+.....++...+ .. .+ ..+...+..+..+++. ..-....|..+
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~-~~a~~~~a~~~~~~---~~-~~--------~~~~~~~~~~~~~~~~-~lN~~gv~~~~ 153 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAV-TIAVDLVAAQLVMS---WW-FP--------DTPGWIWSALFLGVIF-LLNYISVRGFG 153 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh---hc-CC--------CCchHHHHHHHHHHHH-HHHHHcchhhh
Confidence 888888777776665543222 22222222222111 11 10 0111122222222111 11222333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh--hCCccccccccCCCC-ch-hHHHHHHHHHHHHHHhhcccceehHhhhhhcCC
Q 013427 164 SLSVIAAVMSFAYSFIGFGLGVAKVI--GNGFVMGSFSGVSTT-TS-IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKS 239 (443)
Q Consensus 164 ~~s~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 239 (443)
.+.....+..+..++..++..+.... ..+.......++++. .+ .........+.....|+|.+-..+...-+|+||
T Consensus 154 ~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~kn 233 (489)
T PRK10836 154 EAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESED 233 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcC
Confidence 33322222222111111111111111 111100011111110 01 112334455556667999999999999999999
Q ss_pred CCccccchhhhhHHHHHHHHHHHHhhhhhhhc
Q 013427 240 PPPANQTMKKASTMSIITTTIFYLFCGGFGYA 271 (443)
Q Consensus 240 p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~ 271 (443)
| +|+.+|++..++..+.++|......-..
T Consensus 234 P---~r~iPrAi~~~~~~v~~~Yvl~~~~~~~ 262 (489)
T PRK10836 234 P---AKNIPRAVRQVFWRILLFYVFAILIISL 262 (489)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 8 5899999999999999999977554333
No 38
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.30 E-value=2e-09 Score=108.40 Aligned_cols=347 Identities=14% Similarity=0.088 Sum_probs=187.6
Q ss_pred HhhhhhhhhhhHHH-HHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhcccccchhhH
Q 013427 18 ITGVIGSGVLSLAW-SMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSF 96 (443)
Q Consensus 18 ~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~~~~~i 96 (443)
+++++|+|++..|- +.+++|- ..++..++.+++.......+.|...+. |+.| ...+.+++.+||..++++..
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~-P~~G-----g~y~y~~~~~G~~~gf~~gw 76 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVAT-PDTG-----SFSTYADKAIGRWAGYTIGW 76 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-----CHHHHHHHHcChHHHHHHHH
Confidence 57899999999988 6777885 577888888888888888888876543 3333 45666889999999998888
Q ss_pred HHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHH
Q 013427 97 FVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAY 176 (443)
Q Consensus 97 ~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 176 (443)
...+.............+..+....+ ..+...+.++..++.. +.-.+..|....++.+..+..+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~-~lN~~gv~~~~~i~~~~~~~ki~~ 142 (446)
T PRK10197 77 LYWWFWVLVIPLEANIAAMILHSWVP-------------GIPIWLFSLVITLALT-GSNLLSVKNYGEFEFWLALCKVIA 142 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-------------cCcHHHHHHHHHHHHH-HHHHHhhHHHhhhHHHHHHHHHHH
Confidence 88776665555544444443332211 1111222222222121 112233444444444444433332
Q ss_pred HHHHHHHHHHHHhhCCcccc--ccccCCCCch--hHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCccccchhhhhH
Q 013427 177 SFIGFGLGVAKVIGNGFVMG--SFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAST 252 (443)
Q Consensus 177 ~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 252 (443)
++..++..+.......+... ...+..+.++ ++...++..++....|+|.+-..+....+|+||| +|+.+|++.
T Consensus 143 li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai~ 219 (446)
T PRK10197 143 ILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRATN 219 (446)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHHH
Confidence 22222222221111111100 0000000000 1234567889999999999999999999999998 478999999
Q ss_pred HHHHHHHHHHHhhhhhhhccccCcc-c----cc---ccccccccCchHHHHHHHHHHHHHhHhhccccccchHHHHHHHH
Q 013427 253 MSIITTTIFYLFCGGFGYAAFGDNT-P----GN---LLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWI 324 (443)
Q Consensus 253 ~s~~~~~~~y~~~g~~gy~~fg~~~-~----~~---il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~~~~~~ 324 (443)
.+.....++|....+.-......+. + +. ..... ..++...+.++..++..+.+..-......+.+..+-
T Consensus 220 ~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~a 296 (446)
T PRK10197 220 SVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELL---NIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLS 296 (446)
T ss_pred HHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999975544222221111 1 11 11122 123444555555666655555444444444443332
Q ss_pred HH-hcCCCCccccccccCCCCCCCCCCchhHHHHHHHHH-HHHHHHHHhCC--ChHHHHHHhhhhhhhhhHhhhhhHHHH
Q 013427 325 CE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYV-VSVTAIAMSFP--YFNQVLGVIGGVIFWPLTIYFPVEMYF 400 (443)
Q Consensus 325 ~~-~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~ia~~vp--~~~~v~~l~Gs~~~~~l~~ilP~l~~~ 400 (443)
.+ ..|+ +..|.++.+ .+.+-.+..... ++..+.....| .++.++++.+... .+.+.++.+-++
T Consensus 297 rdg~lP~--~~~~~~~~~---------~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i 363 (446)
T PRK10197 297 RRGDAPA--VMGKINRSK---------TPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQL 363 (446)
T ss_pred cCCCcCH--HHHhhCcCC---------CcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 21 1221 111111111 233333333222 22222222233 3677777776555 488888887777
Q ss_pred HHhc
Q 013427 401 KQMN 404 (443)
Q Consensus 401 ~~~~ 404 (443)
+.||
T Consensus 364 ~lr~ 367 (446)
T PRK10197 364 RMRK 367 (446)
T ss_pred HHHH
Confidence 7654
No 39
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.30 E-value=1.9e-09 Score=108.68 Aligned_cols=237 Identities=12% Similarity=-0.008 Sum_probs=142.2
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
+|+-+.++.....++.++|......+.+++++|+..-++..++.+++.......+.|...+. |+.| .....+++
T Consensus 6 ~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~-P~~G-----g~y~~~~~ 79 (442)
T TIGR00908 6 KKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMI-PTAG-----GGYGFARR 79 (442)
T ss_pred hccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-----CHHHHHHH
Confidence 56678889998889999985556668888899986445555666666666666677766543 3333 33445799
Q ss_pred HhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhh
Q 013427 85 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQS 164 (443)
Q Consensus 85 ~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 164 (443)
.+||..+++......+.......++....++++..+.+. .+.+...++...+.. +.-.+..|....
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~~~~~~~~~~~~~~-~ln~~g~~~~~~ 145 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GPGWLAALVFYIVFI-GINILGVGEAAK 145 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CchhHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 999999998888888887777778888888887765432 111122222222111 112223344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCch--hHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCc
Q 013427 165 LSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPP 242 (443)
Q Consensus 165 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 242 (443)
++.+..+..+..+++ .......+.++.+....+..+.+. .....++..++....++|.+.......-+|+|||
T Consensus 146 i~~~~~~~~~~~l~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P-- 220 (442)
T TIGR00908 146 LEFVVTAVAIIALGV---FIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNP-- 220 (442)
T ss_pred HHHHHHHHHHHHHHH---HHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--
Confidence 433332222211111 111110010100000000000011 1123466788888999999999999999999998
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhh
Q 013427 243 ANQTMKKASTMSIITTTIFYLFCGG 267 (443)
Q Consensus 243 ~~~~~~~~~~~s~~~~~~~y~~~g~ 267 (443)
+|+.+|++..+..++.++|...-.
T Consensus 221 -~r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 221 -KRDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred -ccccCHHHHHHHHHHHHHHHHHHH
Confidence 478999999999998888876543
No 40
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.29 E-value=1.6e-09 Score=110.79 Aligned_cols=244 Identities=15% Similarity=0.117 Sum_probs=140.5
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHHH-HhcCccH-HHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWSM-AQLGWIA-GPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 82 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~ 82 (443)
+|+-+.+++....+++++|+|++..|... +++|-.. .++..++.++..........|..... |+.| ..+.| .
T Consensus 41 ~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~-P~sG--G~y~~---~ 114 (501)
T TIGR00911 41 KKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTI-PKSG--GEYNY---I 114 (501)
T ss_pred CccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC--chhhh---H
Confidence 56778999999999999999999998764 4556331 22445566677777777777776543 3334 23344 6
Q ss_pred HHHhcccccchhhHHHHH-HhhhhhHHHHHHHHhhHHH-HHhhhccccCCCCccccccchhHHHHHH--HHHHHhhcCCC
Q 013427 83 DMCLGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRA-IQKSNCYHREGHEAACEYSDTYYMLIFG--AVQLILSQAPD 158 (443)
Q Consensus 83 ~~~~G~~~~~~~~i~~~~-~~~g~~~~y~i~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~pl~~~~~ 158 (443)
++.+||...++....... ...+.+..+....++++.+ +.+. . ..+.+...++.. +.++-..-.+.
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-----~------~~~~~~~~~i~~~~i~~~~~ln~~G 183 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD-----C------EVPEWAIRLVAVLCVLLLTLVNCLS 183 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----C------CCchHHHHHHHHHHHHHHHHHHHhh
Confidence 778999887766654433 2223344444445554322 2110 0 011111111111 11121222344
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccc-cCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhc
Q 013427 159 FHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS-GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTL 237 (443)
Q Consensus 159 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 237 (443)
.|....++.+..+..+..+++.++.++.....++..+.+.. .+++. .+...++..++....|+|.|-.......+|+
T Consensus 184 vk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~--~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~ 261 (501)
T TIGR00911 184 VKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGT--ETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV 261 (501)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCC--CCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh
Confidence 55555555555444443322322333332222111111100 11111 1224566778889999999999999999999
Q ss_pred CCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 013427 238 KSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 270 (443)
Q Consensus 238 ~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy 270 (443)
||| +|+.+|++..+..++.++|.+..+.-.
T Consensus 262 knP---~r~iPrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 262 KNP---YRTLPIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred cCc---hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 488999999999999999998754433
No 41
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.28 E-value=1.5e-09 Score=104.64 Aligned_cols=360 Identities=14% Similarity=0.104 Sum_probs=210.4
Q ss_pred chHHHHHHHHHhhhhhhhhhh-HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHh
Q 013427 8 GTLWTAVAHIITGVIGSGVLS-LAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCL 86 (443)
Q Consensus 8 ~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~ 86 (443)
-+.++--+.-+.+.||+|.+- -..+.+.+|-- -++..+++|++...-++.|.|...+ ++ ...++.+.+++.+
T Consensus 15 L~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~-~p-----~~gSF~~~a~~~l 87 (462)
T COG1113 15 LKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVA-NP-----VSGSFSDYARKYL 87 (462)
T ss_pred hHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CC-----CCCcHHHHHHHHh
Confidence 357888888999999999753 55667777722 3445677888888889999998765 33 3459999999999
Q ss_pred cccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHH--HHhhcCCCCCchhh
Q 013427 87 GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ--LILSQAPDFHNIQS 164 (443)
Q Consensus 87 G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~pl~~~~~l~~l~~ 164 (443)
|++.+++........-...+.+-+..++.+++..++. .+++.+.++..+++ +-+.-.|.+..+.+
T Consensus 88 G~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------------vP~Wv~al~~~~l~~~~NL~sVk~FGE~Ef 154 (462)
T COG1113 88 GPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------------VPQWVFALAAVVLLLAVNLISVKVFGELEF 154 (462)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987643 33445544444333 33445566666665
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCc--hhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCC
Q 013427 165 LSVIA-AVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTT--SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 241 (443)
Q Consensus 165 ~s~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 241 (443)
.-.+- +...+.++++.+.. +.....++.....+.+.-+.. -++...+++.++-+.+|||.+...+=---.|-|||
T Consensus 155 WfAlIKV~aIi~~Iv~G~~l-l~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP- 232 (462)
T COG1113 155 WFALIKVAAIIAFIVVGIVL-LFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDP- 232 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcCh-
Confidence 43332 22222222222111 111222221111222211111 13445778899999999999999999999999998
Q ss_pred ccccchhhhhHHHHHHHHHHHH-----hhhhhhhccccCcccccccccccccCchHHHHHHHHHHHHHhHhhccccccch
Q 013427 242 PANQTMKKASTMSIITTTIFYL-----FCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 316 (443)
Q Consensus 242 ~~~~~~~~~~~~s~~~~~~~y~-----~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~ 316 (443)
+|..+|++..-..=..++|. ++.+..+-.++++.++. ..-+...+-++...+.|.....+.+.+.---++..
T Consensus 233 --~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPF-V~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglyst 309 (462)
T COG1113 233 --EKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPF-VTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYST 309 (462)
T ss_pred --hhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcH-HHHHHHcCCcccccceeEEEeechhhccccccccc
Confidence 46777776654444444444 56666666665544333 22332212233344444444444444443334445
Q ss_pred HHHHHHHHHH-hcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhhhHh--h
Q 013427 317 FAHFEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTI--Y 393 (443)
Q Consensus 317 ~~~~~~~~~~-~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Gs~~~~~l~~--i 393 (443)
.+++..+..+ ..|+. + .|-.+..+| .......+....+..++....| +.++.++-+..+....+ .
T Consensus 310 sRmL~~la~~g~APk~-~-~klsk~gVP--------~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~ 377 (462)
T COG1113 310 SRMLYSLAKQGDAPKA-F-AKLSKRGVP--------VNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWL 377 (462)
T ss_pred chHHHHHhhcCcccHh-H-hhccccCCC--------HHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHH
Confidence 5555554322 11220 0 110011222 3344445555666778888888 44444444433333222 2
Q ss_pred hhhHHHHHHhc
Q 013427 394 FPVEMYFKQMN 404 (443)
Q Consensus 394 lP~l~~~~~~~ 404 (443)
+=.+.|+|.||
T Consensus 378 ~I~~s~l~~rk 388 (462)
T COG1113 378 MILLSQLKLRK 388 (462)
T ss_pred HHHHHHHHHHh
Confidence 33455777665
No 42
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.26 E-value=9.9e-09 Score=104.88 Aligned_cols=255 Identities=13% Similarity=0.096 Sum_probs=129.3
Q ss_pred CCCC-cccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHH-HHHHHHHHHcccCCCCCCCCCCcccH
Q 013427 1 MMSD-DFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVT-LFATFLLCDCHRGPDPEYGPGRNRSY 78 (443)
Q Consensus 1 ~m~~-~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~-~~s~~~l~~~~~~~~~~~g~~~~~~y 78 (443)
||++ +||-++++.+...+++++|.+ .+|.++++.|.. +++..++.+++. .-....+.|.......+.| ..+
T Consensus 1 ~~~~~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG--G~Y-- 73 (496)
T PRK15238 1 MMSNTKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG--GIY-- 73 (496)
T ss_pred CCCcccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--cHH--
Confidence 6775 456689999999999999976 568888888864 445555555443 3344456666544321123 234
Q ss_pred HHHHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHh-hHHHHHhhhccccCCCCccccccch-hHHHH--HHHHHHHhh
Q 013427 79 LEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAI-SMRAIQKSNCYHREGHEAACEYSDT-YYMLI--FGAVQLILS 154 (443)
Q Consensus 79 ~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~i--~~~~~~pl~ 154 (443)
.-.++.+||+.+++...................... ....+... +..+.... ...+.. ...++ ..+.++-..
T Consensus 74 -~w~~~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~a~~~~~~~t~v 149 (496)
T PRK15238 74 -SWMNKSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGK--DTTQTWHF-LGLNSTQVVGILAVIWMILVTFV 149 (496)
T ss_pred -HHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--chhhhhhh-hcccchHHHHHHHHHHHHHHHHH
Confidence 448899999988765443322222211111000000 00000100 00000000 001111 11111 111122223
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHHHH-HHHHHhhCCccc--cccccC-CCCc-hhHHHHHHHHHHHHHHhhccccee
Q 013427 155 QAPDFHNIQSLSVIAAVMSFAYSFIGFGL-GVAKVIGNGFVM--GSFSGV-STTT-SIEKMWLVAQALGDIAFAYPYSLI 229 (443)
Q Consensus 155 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~--~~~~~~-~~~~-~~~~~~~~~~~~~~~~faf~~~~~ 229 (443)
-.|..+..+.++.++.+..+...++.++. .+.....+...+ .+..++ ++.+ +.....+...++....|+|.+...
T Consensus 150 n~~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~ 229 (496)
T PRK15238 150 ASKGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEA 229 (496)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHH
Confidence 45566666666655443333221111111 111111111111 000111 0000 111123466777888999999999
Q ss_pred hHhhhhhcCCCCccccchhhhhHHHHHHHHHHHHhhhhhh
Q 013427 230 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 269 (443)
Q Consensus 230 ~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~g 269 (443)
.....+|+||| +|+.+|++..+...+.++|.+..+..
T Consensus 230 ~~~~a~E~~~p---~~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 230 VGGLVDKTENP---EKNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHHHHHhccCC---CccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 48999999999999999999764433
No 43
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.20 E-value=7.1e-09 Score=112.05 Aligned_cols=246 Identities=16% Similarity=0.084 Sum_probs=153.8
Q ss_pred cchHHHHHHHH-Hhhhhhhhhhh-HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 7 EGTLWTAVAHI-ITGVIGSGVLS-LAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 7 ~~s~~~a~~~l-~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
|-++++.++.- +.+++|+|++- +++...++|...+++.+++.++++..+..-+.+......++.| .. ....++
T Consensus 77 ~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG--G~---Y~yisr 151 (953)
T TIGR00930 77 KFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG--GA---YYLISR 151 (953)
T ss_pred ccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--HH---HHHHHH
Confidence 44577777777 99999999987 6777889998888899999999999998888887654233444 22 344789
Q ss_pred HhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhh
Q 013427 85 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQS 164 (443)
Q Consensus 85 ~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 164 (443)
.+|+..+..+.+...+.+...+..|.+..++++..+++..+.. .. .......+.+-++..+++..+. +...++
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~-~~--~~~~~~~~iia~i~l~ll~~In----~~Gvk~ 224 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSK-IM--VDPINDIRIYGTVTVVVLLGIS----FAGMEW 224 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cc--cCccccchHHHHHHHHHHHHHH----HhhHHH
Confidence 9999988888888888888889999999999998887532110 00 0001112222222222222222 233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC--cccccccc-----CC-CC-chhHHH-HHHHHHHHHHHhhcccceehHhhh
Q 013427 165 LSVIAAVMSFAYSFIGFGLGVAKVIGNG--FVMGSFSG-----VS-TT-TSIEKM-WLVAQALGDIAFAYPYSLILIEIQ 234 (443)
Q Consensus 165 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~-----~~-~~-~~~~~~-~~~~~~~~~~~faf~~~~~~~~i~ 234 (443)
.+.+..++.+..++.++.. +....... .......+ +. +. ...... .+++..++++..||.|......+-
T Consensus 225 ~ak~q~vl~vi~ll~ll~~-iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~s 303 (953)
T TIGR00930 225 ENKAQVLFLVIVLLSILNI-FVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANIS 303 (953)
T ss_pred HHHHHHHHHHHHHHHHHHH-HheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444444333211111111 11111000 00000000 00 00 000111 226678888888999999999999
Q ss_pred hhcCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 013427 235 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 268 (443)
Q Consensus 235 ~~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~ 268 (443)
+|+||| +|+.+|++..++.+++++|+++.+.
T Consensus 304 gElKnP---~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 304 GDLKDP---QKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HhccCh---hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 5899999999999999999988753
No 44
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.11 E-value=4.7e-10 Score=95.53 Aligned_cols=215 Identities=15% Similarity=0.252 Sum_probs=140.0
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccC-------------CCC------------
Q 013427 14 VAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRG-------------PDP------------ 68 (443)
Q Consensus 14 ~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-------------~~~------------ 68 (443)
..-++|-++|+|.|+||.+|+.+||.+++.++.+.+++++.+..+.+++... .++
T Consensus 18 llymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~d 97 (319)
T KOG3832|consen 18 LLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDDD 97 (319)
T ss_pred HhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCCc
Confidence 3466899999999999999999999999999999999999999988886511 000
Q ss_pred -------------------CCCC------CCcccHHHHHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhh
Q 013427 69 -------------------EYGP------GRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKS 123 (443)
Q Consensus 69 -------------------~~g~------~~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~ 123 (443)
++|. .+....+|++.+.|.|.+-.+..+++++++||...+|......+..++.-.
T Consensus 98 vli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~itca 177 (319)
T KOG3832|consen 98 VLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNITCA 177 (319)
T ss_pred EEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhhhh
Confidence 0000 011356788889999999999999999999999999999888888887632
Q ss_pred -----hcc----ccCCCCcccccc-------chhHHHHHHHHH-HHhhcC--CCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 013427 124 -----NCY----HREGHEAACEYS-------DTYYMLIFGAVQ-LILSQA--PDFHNIQSLSVIAAVMSFAYSFIGFGLG 184 (443)
Q Consensus 124 -----~~~----~~~~~~~~~~~~-------~~~~~~i~~~~~-~pl~~~--~~l~~l~~~s~~~~~~~~~~~~i~~~~~ 184 (443)
.|. +-.++.+.||.. +|++++++++++ +|+.+. .+-|.++....+.-+..+. ..+...
T Consensus 178 a~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~diqktk~iqiltslmrw~~~~---~g~~l~ 254 (319)
T KOG3832|consen 178 AIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFADIQKTKHIQILTSLMRWAAFI---LGISLA 254 (319)
T ss_pred hcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEeccccchhHHHHHHHHHHHhcc---chhhhh
Confidence 121 111234556633 567777776554 677653 3344444444444444331 111111
Q ss_pred HHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCC
Q 013427 185 VAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKS 239 (443)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 239 (443)
-.+..++. . ...|.. ...-++-..++...|+|.+|...|+....++.
T Consensus 255 tmqaeeda----a-~a~p~a---rc~cgfgkl~~~aly~~~a~cmapda~gagq~ 301 (319)
T KOG3832|consen 255 TMQAEEDA----A-AAHPPA---RCFCGFGKLFGCALYAFMAHCMAPDAIGAGQT 301 (319)
T ss_pred hhhhcccc----c-ccCCcc---ccccccccccchhhHHHHhhccCCCCCCCCee
Confidence 11211111 1 111211 11112235667789999999999999988874
No 45
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.10 E-value=1.2e-07 Score=96.13 Aligned_cols=247 Identities=17% Similarity=0.176 Sum_probs=155.0
Q ss_pred ccchHHH-HHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 6 FEGTLWT-AVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 6 ~~~s~~~-a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
|+-+.++ ......+.++|.|++.+|......+ ....+..++.+++.........|..++ .++.| ..+.| .++
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~-~p~~G--G~y~~---~~~ 84 (466)
T COG0531 12 KKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSA-IPSAG--GAYAY---AKR 84 (466)
T ss_pred CCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC--Ceeee---hhh
Confidence 4445666 7778899999999999999988776 222333344445555555666666553 34444 33444 999
Q ss_pred HhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHH--HHHhhcCCCCCch
Q 013427 85 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV--QLILSQAPDFHNI 162 (443)
Q Consensus 85 ~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pl~~~~~l~~l 162 (443)
.+||+.++++.....+.......+..+...+.+..+.+... .. ..+...+..+..+. .+-+.-.+..|..
T Consensus 85 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~ln~~G~~~~ 156 (466)
T COG0531 85 ALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG----LL----SIGPLLIILIALALIALLTLLNLRGIKAS 156 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch----hh----cCCchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999889999999988888888888888886666553210 00 01111222222111 2222234445555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCc-hhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCC
Q 013427 163 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTT-SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 241 (443)
Q Consensus 163 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 241 (443)
..+..+..+..+...++..+..+.....+. .+. .++.. ..........++....++|.|-....+.-+|+|||
T Consensus 157 ~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp- 230 (466)
T COG0531 157 AKINSIITILKIIILLIFIILGLFAFGFSN---GNL--FAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNP- 230 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccc---ccc--CCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCc-
Confidence 566555555555443333333333222111 111 11111 11223357788899999999999999999999997
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhhhhhccccC
Q 013427 242 PANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 275 (443)
Q Consensus 242 ~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~ 275 (443)
+|+.+|++..+..++.++|...........++
T Consensus 231 --~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 231 --KRTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred --cccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 47799999999999999999888877776655
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.09 E-value=4.6e-07 Score=92.16 Aligned_cols=253 Identities=11% Similarity=-0.043 Sum_probs=135.8
Q ss_pred cccchHHHHHHHHHhhh-hhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGV-IGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~-iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
+|+-+.++.+..-++.+ +|+|+.+.+..-.+.|-...+...++.++.......-+.|...+. |..| ....-++
T Consensus 12 ~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~-P~aG-----G~Y~~~~ 85 (475)
T TIGR03428 12 HRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARY-PISG-----AIYQWSR 85 (475)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCC-----CHHHHHH
Confidence 46667888887777764 899999877665444433456666677777777777777766543 3344 2334478
Q ss_pred HHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhc-cccCCCCccccccchhHHHHHHHH-HHHhhcCCCCCc
Q 013427 84 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNC-YHREGHEAACEYSDTYYMLIFGAV-QLILSQAPDFHN 161 (443)
Q Consensus 84 ~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~-~~pl~~~~~l~~ 161 (443)
+.+||...+++.....+.......+........+..+.+... ...+.+...+......+.+...++ +.-+.-.+..|.
T Consensus 86 ~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~ 165 (475)
T TIGR03428 86 RMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEW 165 (475)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 889999888888887776655554444444444443321100 000000000000011122111111 111122334555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCC
Q 013427 162 IQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 241 (443)
Q Consensus 162 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 241 (443)
...++.+..+..+..++++++..+... ++++ +.......+.........+..+.....|+|.+-.....+-+|+|||
T Consensus 166 ~~~i~~~~~~~~i~~l~~iii~~~~~~-~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP- 242 (475)
T TIGR03428 166 MSRVNTIGVTCEIVGVLAVIGVLFTHA-QRGP-GVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNP- 242 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc-ceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCc-
Confidence 555555554443322222222222111 1111 0000000000001112334456666789999999999999999998
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhhh
Q 013427 242 PANQTMKKASTMSIITTTIFYLFCGGF 268 (443)
Q Consensus 242 ~~~~~~~~~~~~s~~~~~~~y~~~g~~ 268 (443)
+|+.+|++..+..+..++|..+-+.
T Consensus 243 --~r~iPrai~~s~~i~~~~~~~~~~~ 267 (475)
T TIGR03428 243 --RRVAPRTILTALSVSALGGGLMILG 267 (475)
T ss_pred --chhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999887766554443
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.07 E-value=1.6e-07 Score=95.80 Aligned_cols=245 Identities=11% Similarity=0.028 Sum_probs=127.1
Q ss_pred cccchHHHHHHHHHhhhhh--hhhhh-HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIG--SGVLS-LAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 81 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG--~GiL~-LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l 81 (443)
+|+-+.++....-+. ++| +|+.. ++.+.+++|-..-++..++.+++.......+.|..... |+.| ....-
T Consensus 11 ~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~-P~~G-----g~y~~ 83 (482)
T TIGR00907 11 KREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAY-PTSG-----GQYFW 83 (482)
T ss_pred ecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhC-CCCc-----cHHHH
Confidence 455567776666565 344 56544 45567777766556777788888888888888876543 3334 23344
Q ss_pred HHHHhcc----cccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHH--HHHhhc
Q 013427 82 VDMCLGK----TNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV--QLILSQ 155 (443)
Q Consensus 82 ~~~~~G~----~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pl~~ 155 (443)
+++.+|+ ...+++.....+.....+.+.....++.+..+.... .+ +.. ...+.+...++...+ .+-+.-
T Consensus 84 ~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~~---~~~~~~~~~~i~~~~~~~~~~in 158 (482)
T TIGR00907 84 SAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLT-TP-GRE---YIPTRWHIFGIMIGIHLIHALIN 158 (482)
T ss_pred HHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-CCC---ccccCchhhhhHHHHHHHHHHHH
Confidence 6667764 445666666666666666666666666666554221 11 000 001112212222111 111222
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC-CccccccccCCCCc-hh-HHHHHHHHHHHHHHhhcccceehHh
Q 013427 156 APDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGN-GFVMGSFSGVSTTT-SI-EKMWLVAQALGDIAFAYPYSLILIE 232 (443)
Q Consensus 156 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~faf~~~~~~~~ 232 (443)
.+..|.+..+..+..+..+...++..+..+.....+ ++.+....++.+.+ .+ ........++....|+|.+-.....
T Consensus 159 ~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~ 238 (482)
T TIGR00907 159 SLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAH 238 (482)
T ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhH
Confidence 233344444444333322221111111111110000 00010111111111 10 1123445556667899999999999
Q ss_pred hhhhcCCCCccccchhhhhHHHHHHHHHHHHh
Q 013427 233 IQDTLKSPPPANQTMKKASTMSIITTTIFYLF 264 (443)
Q Consensus 233 i~~~m~~p~~~~~~~~~~~~~s~~~~~~~y~~ 264 (443)
.-+|+||| +|+.+|++..+..+..+++..
T Consensus 239 ~a~E~knP---~r~iP~Ai~~s~~i~~~~~~~ 267 (482)
T TIGR00907 239 MAEEIENP---EVVGPRAIIGAVAIGIVTGFC 267 (482)
T ss_pred HHHhcCCh---hhhcCHHHHHHHHHHHHHHHH
Confidence 99999998 589999999988877655443
No 48
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.96 E-value=8.5e-07 Score=90.70 Aligned_cols=236 Identities=15% Similarity=0.092 Sum_probs=116.0
Q ss_pred CcccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHH--HHHHHHHcccCCCCCCCCCCcccHHHH
Q 013427 4 DDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLF--ATFLLCDCHRGPDPEYGPGRNRSYLEA 81 (443)
Q Consensus 4 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~--s~~~l~~~~~~~~~~~g~~~~~~y~~l 81 (443)
++||-+.++.++..+.+.. ++-.+| .+++.| ++.+...+.+.+.+. ......|......+..| ....|
T Consensus 2 ~~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G--~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G--G~y~w--- 71 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVL--AVYEYP-TFATSG--FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG--GIFAW--- 71 (507)
T ss_pred CCcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC--Ceeee---
Confidence 4566777766666666554 557888 577777 444444455444432 45555665543211233 44566
Q ss_pred HHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHH-HHH--HHHhhcCCC
Q 013427 82 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIF-GAV--QLILSQAPD 158 (443)
Q Consensus 82 ~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~--~~pl~~~~~ 158 (443)
+++.+|++.+++..+...+...................... .++ .....++..+. .++ .+-+...+.
T Consensus 72 v~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~----~~~------~~~~~~~~~i~~l~i~~~~t~~n~~G 141 (507)
T TIGR00910 72 VSNTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK----FPA------LNEDPIIKFIAALIIFWALAFSQFGG 141 (507)
T ss_pred hhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cch------hccCcHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999888765555554432222211111111111111 000 00011112111 111 122223344
Q ss_pred CCchhhHHHHHHHHH-HHHHHHHHHHHHHHHhhCCcccccc--cc-CCCCchhHHHHHHHHHHHHHHhhcccceehHhhh
Q 013427 159 FHNIQSLSVIAAVMS-FAYSFIGFGLGVAKVIGNGFVMGSF--SG-VSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQ 234 (443)
Q Consensus 159 l~~l~~~s~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~ 234 (443)
.|....++.++.+.. +...++.++..+.....+++..... .+ .|+.. ..+....+....|+|.|-......-
T Consensus 142 ~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~----~~~~~~~~~~~~faf~G~E~~a~~a 217 (507)
T TIGR00910 142 TKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFS----KVGTLVVFVAFIGAYMGVEASASHI 217 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcc----cccHHHHHHHHHHHHhcHHHHHHHH
Confidence 444444443332211 1111112222222212222111110 00 11111 1122344445689999999999999
Q ss_pred hhcCCCCccccchhhhhHHHHHHHHHHHHhhh
Q 013427 235 DTLKSPPPANQTMKKASTMSIITTTIFYLFCG 266 (443)
Q Consensus 235 ~~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~g 266 (443)
+|+||| +|+++|++..+..++.++|....
T Consensus 218 ~E~knP---~r~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 218 NELENP---GRDYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHccCC---cccccHHHHHHHHHHHHHHHHHH
Confidence 999998 48999999999999888887644
No 49
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.96 E-value=1.5e-06 Score=88.39 Aligned_cols=52 Identities=10% Similarity=0.053 Sum_probs=43.6
Q ss_pred HHHhhcccceehHhhhhhcCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhccc
Q 013427 219 DIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAF 273 (443)
Q Consensus 219 ~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~f 273 (443)
.+.++|.|-......-+|+||| +|+.+|++..+..++.++|....+.-....
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~ 253 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNP---DKNYPIAILIAALGTVLIFVLGTLAIAFII 253 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4578999999999999999998 589999999999999999987655444333
No 50
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.86 E-value=6.8e-07 Score=86.04 Aligned_cols=237 Identities=14% Similarity=0.095 Sum_probs=151.2
Q ss_pred cchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHh
Q 013427 7 EGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCL 86 (443)
Q Consensus 7 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~ 86 (443)
|-|.+|....+...++|+|++.+|....+.+- .|.+..++.+........+..+..+++ +..+..|..++.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~-------p~~~l~~~~~~~~ 72 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRF-------PGKTLVEISEKLF 72 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHh
Confidence 34678999999999999999999999776642 444555555555555555555655433 3459999999999
Q ss_pred cccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHH
Q 013427 87 GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLS 166 (443)
Q Consensus 87 G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 166 (443)
||+.+.++.+...+..+......+...+|.++...-. +.+.......+. +..-....+.++.+...+
T Consensus 73 Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp------------~TP~~~i~~~~l-l~~~y~a~~G~e~i~R~~ 139 (320)
T PF03845_consen 73 GKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLP------------ETPIWVIILLFL-LVAAYAARKGIEVIARVA 139 (320)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------cCCHHHHHHHHH-HHHHHHHhcCHHHHHHHH
Confidence 9999999999999998888888888888888875421 112222222222 222233455666666644
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCccccc
Q 013427 167 VIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQT 246 (443)
Q Consensus 167 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~ 246 (443)
.+-....+...+. ......++.+.+ .+ .|-. ..+..+...+.....+.|.+-....-+...+|++ |+
T Consensus 140 ~~~~~~~~i~~~~----i~~~~~~~~~~~-~l--~P~~--~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~ 206 (320)
T PF03845_consen 140 EILFPIFLILLLL----ILLLSIPNIDWD-NL--LPVL--ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK----KK 206 (320)
T ss_pred HHHHHHHHHHHHH----HHHHhcccCCHH-He--eCcc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hH
Confidence 4443333221111 111112211111 01 1211 1223445555556667777777777778888876 78
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhccccCcc
Q 013427 247 MKKASTMSIITTTIFYLFCGGFGYAAFGDNT 277 (443)
Q Consensus 247 ~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~ 277 (443)
.+|....+...+.++|...-+.....||.+.
T Consensus 207 ~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~ 237 (320)
T PF03845_consen 207 LKKSLLIAILISGLFLLFIIFITIGVFGPEL 237 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 8999999999999988887777777887644
No 51
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.72 E-value=2.4e-05 Score=77.57 Aligned_cols=295 Identities=13% Similarity=0.107 Sum_probs=190.2
Q ss_pred ccchHHHHHHHHHhhhhhhhhh-hHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 6 FEGTLWTAVAHIITGVIGSGVL-SLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
|+-+.+.-.+.-+++.+|+|.+ +.-.+.+++|-...++..++++.+.+..+.-|.|.+... |..| +|...+.+
T Consensus 44 R~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~-P~sG-----sF~~ya~r 117 (541)
T COG0833 44 RSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFY-PVSG-----SFSTYATR 117 (541)
T ss_pred hhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC-----chhhhhhh
Confidence 4445677888899999999986 589999999999888999999999999999999987654 2333 57777999
Q ss_pred HhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhh--cCCCCCch
Q 013427 85 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILS--QAPDFHNI 162 (443)
Q Consensus 85 ~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~--~~~~l~~l 162 (443)
..++..+..+.....+...-++..-++..+..++...+. ..+...|..++.++++.+- -.|.+..-
T Consensus 118 fvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~ 185 (541)
T COG0833 118 FVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPD------------TVPPWIWIAIFLVLIFLLNLFGVKGFGET 185 (541)
T ss_pred hcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------------CCChHHHHHHHHHHHHHHHHhccccccee
Confidence 999988888888888888888888888887777775422 1346688887777665554 34555555
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHhhCCcccccc-cc-CCCCch-hHHHHHHHHHHHHHHhhcccceehHhhhhhcC
Q 013427 163 QSL-SVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF-SG-VSTTTS-IEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 238 (443)
Q Consensus 163 ~~~-s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 238 (443)
.++ |.+=++.++.+++ .++.......+.++.. .+ ..+... .+.+.++...+-+..|||.+...+--...|-+
T Consensus 186 Efw~s~iKV~~ii~Fii----~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~ 261 (541)
T COG0833 186 EFWFSSIKVLTIIGFII----LGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESE 261 (541)
T ss_pred hHHHHHHHHHHHHHHHH----HHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccC
Confidence 543 3333333332222 2222111111111110 00 011111 23356677888889999999999999999999
Q ss_pred CCCccccchhhhhHHHHHHHHHHHHhhh-hhhhcc-ccCc----------ccccccccccccCchHHHHHHHHHHHHHhH
Q 013427 239 SPPPANQTMKKASTMSIITTTIFYLFCG-GFGYAA-FGDN----------TPGNLLTGFGFYEPYWLIDLANAFIVIHLV 306 (443)
Q Consensus 239 ~p~~~~~~~~~~~~~s~~~~~~~y~~~g-~~gy~~-fg~~----------~~~~il~~~~~~~~~~~~~~~~~~~~i~~~ 306 (443)
|| +|..+|++.-.+.=..++|+..- +.|.+. |.|. ..++....+.+..-..+..+.|..++++++
T Consensus 262 nP---~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svl 338 (541)
T COG0833 262 NP---RKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVL 338 (541)
T ss_pred Cc---hhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHH
Confidence 98 58899999888888888887422 222222 3220 111222222211224456677777777777
Q ss_pred hhccccccchHHHHHHHHH
Q 013427 307 GGYQVYSQPIFAHFEKWIC 325 (443)
Q Consensus 307 ~sypl~~~p~~~~~~~~~~ 325 (443)
.+----++...+++-.+-.
T Consensus 339 Sa~NS~lYasSR~L~sLA~ 357 (541)
T COG0833 339 SAANSGLYASSRMLYSLAK 357 (541)
T ss_pred HHhhccchHHHHHHHHHHh
Confidence 6654445555666655543
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.70 E-value=1.3e-07 Score=96.27 Aligned_cols=244 Identities=17% Similarity=0.162 Sum_probs=144.6
Q ss_pred Hhhhhhhhhhh-HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhcccccchhhH
Q 013427 18 ITGVIGSGVLS-LAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSF 96 (443)
Q Consensus 18 ~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~~~~~i 96 (443)
+.+++|+|++. .+.+..++|....++..++.+++......-+.|..++.. +.| .+.+.+++.+|+..+..+.+
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~G-----g~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAG-----GFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-ccc-----chhhhhhhccCCcCCceeeH
Confidence 56788888876 677888888877788888888888888888888876643 333 55666889999999888888
Q ss_pred HHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHH
Q 013427 97 FVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAY 176 (443)
Q Consensus 97 ~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 176 (443)
...+.............+..++.... . .+... .+.....+..++.+++..+.+ ...|....+...-....+..
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~----~~~~~~~~~~i~~~~~~~l~~-~gv~~~~~~~~~~~~i~~~~ 153 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGY-F-PGLPS----TWVWGILIAIIFILLITLLNL-FGVRVSGKIEFILTIIKLIA 153 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccc-c-ccccc----cccccchhhhhhhhhhhhhhh-hhhhccchHHHHHHHHhhhH
Confidence 87777666666666666555554311 0 00000 011101122233332222222 22333333222222222211
Q ss_pred HHHHHHHH-HHHHhhCCcccc-----ccc---cCCCC---chhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCccc
Q 013427 177 SFIGFGLG-VAKVIGNGFVMG-----SFS---GVSTT---TSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPAN 244 (443)
Q Consensus 177 ~~i~~~~~-~~~~~~~~~~~~-----~~~---~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~ 244 (443)
++..++.. +......++.+. +.. .+|+. .+.....+++.++....++|.+-......-+|.||| +
T Consensus 154 li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P---~ 230 (478)
T PF00324_consen 154 LIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNP---R 230 (478)
T ss_pred hhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCc---h
Confidence 11111122 111111111111 000 11110 011225668899999999999999999999999998 5
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhccccCcc
Q 013427 245 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 277 (443)
Q Consensus 245 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~ 277 (443)
|+.+|++..++....++|.......-...+.+.
T Consensus 231 k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 231 KTIPRATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhhhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 899999999999999999987766555554433
No 53
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.45 E-value=3e-06 Score=86.32 Aligned_cols=304 Identities=13% Similarity=0.037 Sum_probs=180.4
Q ss_pred cccchHHHHHHHHHhhhhhhhhhh-HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCC-CCCCcccHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLS-LAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEY-GPGRNRSYLEAV 82 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~-g~~~~~~y~~l~ 82 (443)
+|+-+.+.-.+.-+++++|+|++- ...+.++.|-..-++..++.+...+.++.-+.|..-+. |.. | ...+| +
T Consensus 29 kR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~-P~~aG--s~~~y---a 102 (554)
T KOG1286|consen 29 KRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRF-PVSAG--SFYTY---A 102 (554)
T ss_pred hccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheec-ccccc--cceee---e
Confidence 345566777777799999999987 56777788777777778888888888888888876543 332 3 23455 8
Q ss_pred HHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHH--HHHHHhhcCCCCC
Q 013427 83 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG--AVQLILSQAPDFH 160 (443)
Q Consensus 83 ~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~pl~~~~~l~ 160 (443)
.+..|+-...++.....+.....+.+.....+.+++.+.. .+.-.......+...|..++. ++++.+...+-.-
T Consensus 103 ~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~----~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~g 178 (554)
T KOG1286|consen 103 YRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG----ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYG 178 (554)
T ss_pred eeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc----cccccccccCCCCCccHHHHHHHHHHHHHHHHhhcc
Confidence 8899999999999999999999999999999999999861 000000000122223332222 2223333344434
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc-ccccCCCCc---h-hHH-HHHHHHHHHHHHhhcccceehHhhh
Q 013427 161 NIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMG-SFSGVSTTT---S-IEK-MWLVAQALGDIAFAYPYSLILIEIQ 234 (443)
Q Consensus 161 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~---~-~~~-~~~~~~~~~~~~faf~~~~~~~~i~ 234 (443)
..++......+.+..-.++.. ..+... ..+.+. .+.+....+ . .+. +.++.+.+.+..|+|.+...+-..-
T Consensus 179 e~ef~~~~~kvl~~v~~~Il~-iVi~~G--~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a 255 (554)
T KOG1286|consen 179 EVEFSLAFNKILTAVGFIILA-IVIIAG--GGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTA 255 (554)
T ss_pred ceeehHHHHHHHHHHHHHHhh-eeeecC--CCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHH
Confidence 444444333332221111111 111111 111110 111111001 0 111 4567789999999999999999999
Q ss_pred hhcCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhcc--ccCc-ccccccccccc---cCc---hHHHHHHHHHHHHHh
Q 013427 235 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA--FGDN-TPGNLLTGFGF---YEP---YWLIDLANAFIVIHL 305 (443)
Q Consensus 235 ~~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~--fg~~-~~~~il~~~~~---~~~---~~~~~~~~~~~~i~~ 305 (443)
+|-||| +|..++++..++..+.++|....+.-=+. |.|. ..++....-|. .+. ..+..+.++..++.+
T Consensus 256 ~E~kNP---~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~ 332 (554)
T KOG1286|consen 256 EEAKNP---RKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGL 332 (554)
T ss_pred HhccCC---cccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHH
Confidence 999998 58999999999999999999766543333 2220 11111100000 011 222236777777777
Q ss_pred HhhccccccchHHHHHHHH
Q 013427 306 VGGYQVYSQPIFAHFEKWI 324 (443)
Q Consensus 306 ~~sypl~~~p~~~~~~~~~ 324 (443)
+.+---.+++.-+.+-.+.
T Consensus 333 ~s~~n~~~y~~sR~l~amA 351 (554)
T KOG1286|consen 333 LSSLNSSLYAGSRVLYALA 351 (554)
T ss_pred HHHHHHHhHHhHHHHHHHH
Confidence 6666555667666666654
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.35 E-value=0.00031 Score=65.35 Aligned_cols=138 Identities=16% Similarity=0.116 Sum_probs=98.0
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHH---HHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHh
Q 013427 10 LWTAVAHIITGVIGSGVLSLAWS---MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCL 86 (443)
Q Consensus 10 ~~~a~~~l~~~~iG~GiL~LP~a---f~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~ 86 (443)
..+-.+-.+..++|+|.=+==-- |..-|+. |....++++++-..++....+..++. +..+|+|.-+..+
T Consensus 5 ~~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f-------~a~~y~~~~~~v~ 76 (349)
T COG3949 5 FMRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKF-------NATSYREILKYVS 76 (349)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHh-------cccchHHHHHHHh
Confidence 34556667779999997663222 3344544 66666667777777777777776554 4569999999999
Q ss_pred cccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHH
Q 013427 87 GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLS 166 (443)
Q Consensus 87 G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 166 (443)
||+...+.|+.+.+..++.++.-+-..+..+.+.. ..+.+.-.++....+..+.++++.+.+-.+.
T Consensus 77 ~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~--------------~lP~wiGali~i~~v~i~lfl~~vegi~tvn 142 (349)
T COG3949 77 GPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMF--------------GLPYWIGALIIILLVLILLFLGRVEGIITVN 142 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHh--------------CccHHHHHHHHHHHHHHHHHHhcccceeeeh
Confidence 99999999999999999999988888887777754 2344444455555566666777777766555
Q ss_pred HHH
Q 013427 167 VIA 169 (443)
Q Consensus 167 ~~~ 169 (443)
.+-
T Consensus 143 ~iI 145 (349)
T COG3949 143 GII 145 (349)
T ss_pred eeH
Confidence 433
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.33 E-value=0.00042 Score=69.82 Aligned_cols=191 Identities=14% Similarity=0.028 Sum_probs=110.1
Q ss_pred ccHHHHHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccc--cchhHHHHHHHHHHHh
Q 013427 76 RSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEY--SDTYYMLIFGAVQLIL 153 (443)
Q Consensus 76 ~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~pl 153 (443)
.++..+.+..||++|..+..+...+...|=........++.+..+++....+ ..+ .+... ......+++..+.+++
T Consensus 76 l~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~-~~~-~~~~~t~~~~~~~~i~~~l~~~~ 153 (442)
T TIGR00800 76 LPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPG-YLH-LGNGMTTLELICFIIFWALVLVF 153 (442)
T ss_pred CCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc-ccc-cCCcccHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999999999999998888664221 000 00001 1122334445555665
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCC-CchhHHHHHHHHHHHHHHhh-cccceehH
Q 013427 154 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVST-TTSIEKMWLVAQALGDIAFA-YPYSLILI 231 (443)
Q Consensus 154 ~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~fa-f~~~~~~~ 231 (443)
......+..+.....+....+.... ..++...+.+.... ....++ .++....+.+..++...+-. -..-.+.+
T Consensus 154 ~~~~g~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~ 228 (442)
T TIGR00800 154 LFFFGYKIRHLFEWLAVVPPFAAFG----MLIWALSKAHGKGP-LGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAP 228 (442)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCCc-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCch
Confidence 5555555555555555443332111 11222222111111 111111 11122334455544443222 23566789
Q ss_pred hhhhhcCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhcc----ccCcc
Q 013427 232 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA----FGDNT 277 (443)
Q Consensus 232 ~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~----fg~~~ 277 (443)
+..|.+|++ |+-.+....++.........+|..+... +|+..
T Consensus 229 DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 229 DFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred hhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 999999986 5555667777777777777777777665 66543
No 56
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.23 E-value=0.0049 Score=62.88 Aligned_cols=149 Identities=13% Similarity=0.046 Sum_probs=88.6
Q ss_pred ccchHHHHHHHHHhhhhhh-hhhhHHHHHHhcCccHHHHHH--HHHHH-HHHHHHHHHHHcccCCCCCCCCCCcccHHHH
Q 013427 6 FEGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAM--VIFAS-VTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 81 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~i~l--~~~~~-~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l 81 (443)
|+-++|-..+.+..+.+|+ ..++.|-...+.|+....... ..... ...+-...+.+-.++. +..|..|.
T Consensus 41 r~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-------~~~T~~e~ 113 (483)
T PRK09442 41 RSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-------NAVTLNDM 113 (483)
T ss_pred CCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCccHHHH
Confidence 4445666777776666555 566677666666753111110 01111 1111222222222322 56799999
Q ss_pred HHHHhccc-ccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCC
Q 013427 82 VDMCLGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFH 160 (443)
Q Consensus 82 ~~~~~G~~-~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 160 (443)
-++-||++ .+.+..+...+..++...+.+...+..++.+.+ .+....+++..++++.......++
T Consensus 114 l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GGl~ 179 (483)
T PRK09442 114 LRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGITVALYTAFGGFR 179 (483)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhccHH
Confidence 99999976 456666666666667777777788888877652 223344555566666677788888
Q ss_pred chhhHHHHHHHHHHH
Q 013427 161 NIQSLSVIAAVMSFA 175 (443)
Q Consensus 161 ~l~~~s~~~~~~~~~ 175 (443)
...+...+-.+..+.
T Consensus 180 av~~TD~iQ~~i~~~ 194 (483)
T PRK09442 180 AVVLTDALQGIVMLV 194 (483)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888777655443
No 57
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.20 E-value=0.0059 Score=60.30 Aligned_cols=226 Identities=12% Similarity=0.077 Sum_probs=128.5
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhccc
Q 013427 10 LWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKT 89 (443)
Q Consensus 10 ~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~ 89 (443)
|....+++.+-..|+.... .++..+++..++...+...-+.+..... ++ ...++.-+.+..||++
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G----~~----~Gl~~~v~sR~~FG~~ 71 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIG----AD----TGLSAMGSLKLSLGSK 71 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhh----cc----cCcCHHHHHHHHHccc
Confidence 5556666666666654321 4444455554444444333333333332 12 2358899999999999
Q ss_pred ccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHHHH
Q 013427 90 NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIA 169 (443)
Q Consensus 90 ~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 169 (443)
|..+..+...+...|--.......++.+..+.+..... .+...+..+..++..+.+.. ..|.++++..++
T Consensus 72 Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~---------~~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~ 141 (386)
T TIGR02358 72 GSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE---------ESPMLWILIVGILVTLWLLS-GPLAFVWLNNWS 141 (386)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999987542110 11223444444444555543 457777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhh-cccceehHhhhhhcCCCCccccchh
Q 013427 170 AVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFA-YPYSLILIEIQDTLKSPPPANQTMK 248 (443)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~p~~~~~~~~ 248 (443)
........+...+... .+.+... ..+.+ .+ .++..+++...-. -......++..|..|+| |+.-
T Consensus 142 ~~~~~i~~~~~~~~~~----~~~~~~~-~~~~~--~~----~s~~~~~~~~~~~~~swa~~~~DysRy~k~~----~~~~ 206 (386)
T TIGR02358 142 VWLLLIATLWLLVVVF----SKADLSE-LWNRA--GD----MSFAVAVELVIAMPLSWLPLIADYTRFARNP----RHVF 206 (386)
T ss_pred HHHHHHHHHHHHHHHH----hccchhh-hcCCC--CC----ccHHHHHHHHHHHHHHHHHHccchhhhcCCC----ccee
Confidence 6655433222221221 1111111 11111 11 1111122111100 11223378899988876 7777
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhccccC
Q 013427 249 KASTMSIITTTIFYLFCGGFGYAAFGD 275 (443)
Q Consensus 249 ~~~~~s~~~~~~~y~~~g~~gy~~fg~ 275 (443)
.....+..+...+-..+|.....+.++
T Consensus 207 ~~~~~G~~i~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 207 LGTVLGYFIGSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 778888888888888888877666554
No 58
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.14 E-value=0.0085 Score=60.99 Aligned_cols=147 Identities=13% Similarity=0.097 Sum_probs=92.3
Q ss_pred ccchHHHHHHHHHhhhhhhhh-hhHHHHHHhcCccHHHHHHHHHHHHHHHH----HHHHHHcccCCCCCCCCCCcccHHH
Q 013427 6 FEGTLWTAVAHIITGVIGSGV-LSLAWSMAQLGWIAGPLAMVIFASVTLFA----TFLLCDCHRGPDPEYGPGRNRSYLE 80 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~g~i~l~~~~~~~~~s----~~~l~~~~~~~~~~~g~~~~~~y~~ 80 (443)
|+-+++...+.+..+.+|++. ++.|-...+.|+........ .....+.+ ...+.+..+++ +..|.+|
T Consensus 40 r~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~T~~e 111 (471)
T TIGR02119 40 RSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMI-QVPTGYFVLGVLGKKFAIISRKY-------NAITIND 111 (471)
T ss_pred CcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc-------CCccHHH
Confidence 555677788888888877654 45777776777531111000 00111111 12222222222 5679999
Q ss_pred HHHHHhccc-ccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCC
Q 013427 81 AVDMCLGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDF 159 (443)
Q Consensus 81 l~~~~~G~~-~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 159 (443)
.-++-||++ .+++..+...+..++...+.+...+..++.+++ .+.+..+++..++++.......+
T Consensus 112 ~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GG~ 177 (471)
T TIGR02119 112 VLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------------LSYLTALFIFSSSVLIYTTFGGF 177 (471)
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhH
Confidence 999999966 467788888888888888888888888877652 23344455555656666777888
Q ss_pred CchhhHHHHHHHHHH
Q 013427 160 HNIQSLSVIAAVMSF 174 (443)
Q Consensus 160 ~~l~~~s~~~~~~~~ 174 (443)
+...++..+-.+..+
T Consensus 178 ~av~~td~iQ~~v~~ 192 (471)
T TIGR02119 178 RAVALTDAIQGIVMF 192 (471)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877765444
No 59
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.13 E-value=0.015 Score=59.41 Aligned_cols=145 Identities=10% Similarity=-0.037 Sum_probs=96.5
Q ss_pred hHHHHHHHHHhhhhh-hhhhhHHHHHHhcCccHHHHHHH---HHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 9 TLWTAVAHIITGVIG-SGVLSLAWSMAQLGWIAGPLAMV---IFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 9 s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~i~l~---~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
+.+-.......+..+ .-.+++|-...+.|+....+... .....-.+-...+.+..++ + +..|.+|.-++
T Consensus 41 g~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~----~---~~~T~~d~l~~ 113 (493)
T COG0591 41 GPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA----R---GATTIPDFLEA 113 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c---CCccHHHHHHH
Confidence 333444555444454 78888999999999764444333 2233333334444444321 1 57899999999
Q ss_pred Hhc-ccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchh
Q 013427 85 CLG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 163 (443)
Q Consensus 85 ~~G-~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 163 (443)
-|| |..|.+..+...+..++.+...+...++.++.... .+...-+++...++.....+..+++..
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------------i~~~~~~~~~~~~v~~Yt~~gG~~av~ 179 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------------ISYVTGILIGALIVALYTFLGGLRAVV 179 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------------CCHHHHHHHHHHHHHHHHHHcChhHHH
Confidence 999 88999999999999999999999999998865542 223333444455555566667777777
Q ss_pred hHHHHHHHHHH
Q 013427 164 SLSVIAAVMSF 174 (443)
Q Consensus 164 ~~s~~~~~~~~ 174 (443)
+...+-.....
T Consensus 180 ~Td~iqg~im~ 190 (493)
T COG0591 180 WTDFIQGLIML 190 (493)
T ss_pred HHHHHHHHHHH
Confidence 77776654444
No 60
>PRK11375 allantoin permease; Provisional
Probab=98.11 E-value=0.0071 Score=61.52 Aligned_cols=184 Identities=8% Similarity=-0.001 Sum_probs=98.2
Q ss_pred cccHHHHHHHHhcccccchhhHHHH-HHhhhhhHHHHHHHHhhHHHHHhhhccccCCC--Cc-cccccchhH--HHHHHH
Q 013427 75 NRSYLEAVDMCLGKTNAWACSFFVH-VGLYGTAIAYTVTSAISMRAIQKSNCYHREGH--EA-ACEYSDTYY--MLIFGA 148 (443)
Q Consensus 75 ~~~y~~l~~~~~G~~~~~~~~i~~~-~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~--~~-~~~~~~~~~--~~i~~~ 148 (443)
..++.-+.+..||++|..+..+... +..+|=........++.+..+++....+-++. +. ....+...+ .+++.+
T Consensus 88 Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 167 (484)
T PRK11375 88 GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWL 167 (484)
T ss_pred CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHH
Confidence 3588999999999999888888874 56677777777888888887775432110000 00 001121122 234445
Q ss_pred HHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCC--CchhHHHHHHHHHHHHHHhhcc-
Q 013427 149 VQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVST--TTSIEKMWLVAQALGDIAFAYP- 225 (443)
Q Consensus 149 ~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~faf~- 225 (443)
+..++.+ ...|.++.++.++....+...+...+..+.+. + .+......|. .+.....+.+..++...+=++.
T Consensus 168 l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~---g-~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~ 242 (484)
T PRK11375 168 VNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLV---G-IGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAA 242 (484)
T ss_pred HHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C-CchhhccCcccccCCcchHHHHHHHHHHHHHHHHH
Confidence 5566654 44677777777666655433333332333222 1 1111000010 0111123444444433333343
Q ss_pred cceehHhhhhhcCCCCccccchhhhhHHHHHHHHHHHHhhhh
Q 013427 226 YSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG 267 (443)
Q Consensus 226 ~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~ 267 (443)
.-.+.|+..|..|++ |+..+....+..+...+...+|+
T Consensus 243 ~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~ 280 (484)
T PRK11375 243 PAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASV 280 (484)
T ss_pred HHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHH
Confidence 445889999999987 55666666666665555544443
No 61
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.10 E-value=0.00058 Score=67.89 Aligned_cols=234 Identities=12% Similarity=0.070 Sum_probs=126.2
Q ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH---HHhcccccchhhHHHHHHhhhh
Q 013427 29 LAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD---MCLGKTNAWACSFFVHVGLYGT 105 (443)
Q Consensus 29 LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~---~~~G~~~~~~~~i~~~~~~~g~ 105 (443)
+++....+|-..-.-..++.+.+...+..-|.|..... |..|. -|--.+. +-+|+...|++...+.+.+...
T Consensus 73 m~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~-PtsGg----Ly~waa~lap~k~~~~~sw~~Gw~~~~g~~~~ 147 (550)
T KOG1289|consen 73 MAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAM-PTSGG----LYFWAAVLAPPKYGPFASWVTGWLNYLGQATG 147 (550)
T ss_pred eeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhC-CCCCc----HHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 55555545544333345566666777777777765443 22332 3332222 2233333345554554444444
Q ss_pred hHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcC--CCCCchhhHHHHHHHHHHHHHHHHHHH
Q 013427 106 AIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA--PDFHNIQSLSVIAAVMSFAYSFIGFGL 183 (443)
Q Consensus 106 ~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~--~~l~~l~~~s~~~~~~~~~~~~i~~~~ 183 (443)
..+--...++.+....... +++ ...+++....++.++.+..+++ .--|.+++++.+++...+...++.++.
T Consensus 148 ~aSi~~S~A~~i~~~v~l~--np~-----y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~ 220 (550)
T KOG1289|consen 148 VASITYSLAQLILGAVSLT--NPN-----YEPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMIT 220 (550)
T ss_pred chhhhHHHHHHHHHHHhhc--CCC-----CcccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444321 111 1223333333444443333322 224677777777777666555555544
Q ss_pred HHHHHhhCCccc-cc--cccCCCCchhH-HHHHHHHHHHHHHhhcccceehHhhhhhcCCCCccccchhhhhHHHHHHHH
Q 013427 184 GVAKVIGNGFVM-GS--FSGVSTTTSIE-KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTT 259 (443)
Q Consensus 184 ~~~~~~~~~~~~-~~--~~~~~~~~~~~-~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~ 259 (443)
......++.+.. ++ ..++.+.++++ ..+.+.-++-..+..+.|-.....+.+|-||+ +|+.+|++..+..+..
T Consensus 221 lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nA---sk~aPrgIi~s~~i~~ 297 (550)
T KOG1289|consen 221 LLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNA---SKAAPRGIISSIAIGF 297 (550)
T ss_pred hhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcch---hhhccHHHHHHHHHHH
Confidence 443332221111 11 12233334444 55777777788888999999999999999987 4899999998888888
Q ss_pred HHHHhhhhhhhccccCcc
Q 013427 260 IFYLFCGGFGYAAFGDNT 277 (443)
Q Consensus 260 ~~y~~~g~~gy~~fg~~~ 277 (443)
++=..+-+.-..+-+++.
T Consensus 298 i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 298 ILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred HHHHHHHHHHHHhccchH
Confidence 876655554455555433
No 62
>PRK12488 acetate permease; Provisional
Probab=98.04 E-value=0.024 Score=58.69 Aligned_cols=147 Identities=16% Similarity=0.103 Sum_probs=93.8
Q ss_pred ccchHHHHHHHHHhhhhhhh-hhhHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 6 FEGTLWTAVAHIITGVIGSG-VLSLAWSMAQLGWIAGPLAMVIFASVTLFA-TFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~~~~~s-~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
|+-++|...+.+..+.++++ .++.|-.....|+-. .. ......+.+.- ..++.+-.++. +..|.+|.-+
T Consensus 67 R~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~-~~~g~~~g~~~~~~~~a~~lr~~-------g~~T~~d~l~ 137 (549)
T PRK12488 67 GGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LL-YALGVLAGWPIILFLIAERLRNL-------GKYTFADVVS 137 (549)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HH-HHHHHHHHHHHHHHHHHHHHHHC-------CCcchHHHHH
Confidence 45567777777777766665 467888777778642 21 11111122111 12233322222 4579999999
Q ss_pred HHhc-ccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCch
Q 013427 84 MCLG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 162 (443)
Q Consensus 84 ~~~G-~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 162 (443)
+-|| |+.|.+..+...+..+......+...+..++.+++ .+.+..+++..++.+.......++..
T Consensus 138 ~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------------i~~~~~iii~~~i~~~Yt~~GGm~av 203 (549)
T PRK12488 138 YRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------------ISYLYAVVIVGALMVLYVTFGGMLAT 203 (549)
T ss_pred HHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhccchhHH
Confidence 9888 56888888888888888888888888887777642 23344455666666666778888888
Q ss_pred hhHHHHHHHHHHH
Q 013427 163 QSLSVIAAVMSFA 175 (443)
Q Consensus 163 ~~~s~~~~~~~~~ 175 (443)
.+...+-.+..+.
T Consensus 204 ~~td~iQ~~im~~ 216 (549)
T PRK12488 204 TWVQIIKAVLLLS 216 (549)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877655543
No 63
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.03 E-value=0.00049 Score=68.60 Aligned_cols=149 Identities=11% Similarity=0.087 Sum_probs=88.4
Q ss_pred cccchHHHHHHHHHhhhhhh-hhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
.|+-++|-..+.+..+.+|+ ..++.|-...+.|+.. ....+...........++.+-.++. +..|.+|.-+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~-------~~~T~~e~~~ 76 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRS-------GAVTIPEYLE 76 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHT-------T--SHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhccc-------chhhhhhhhh
Confidence 56667788888888777776 4667888888888753 2222333333333334444444322 5679999999
Q ss_pred HHhcccc--cchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCc
Q 013427 84 MCLGKTN--AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 161 (443)
Q Consensus 84 ~~~G~~~--~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 161 (443)
+-+|++. +.+..+...+..+......+...+..++.+.. .+.....++..++.+.......++.
T Consensus 77 ~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i~~iYt~~GGl~a 142 (406)
T PF00474_consen 77 KRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVIVIIYTFFGGLRA 142 (406)
T ss_dssp HHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHTTCTT----
T ss_pred hhcCCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHHHHHhhhhhhHhh
Confidence 9999998 66666666777777777888888877777642 2344555566666666778888888
Q ss_pred hhhHHHHHHHHHHH
Q 013427 162 IQSLSVIAAVMSFA 175 (443)
Q Consensus 162 l~~~s~~~~~~~~~ 175 (443)
..+...+-.+..+.
T Consensus 143 v~~td~iQ~~i~~~ 156 (406)
T PF00474_consen 143 VAWTDFIQGVIMII 156 (406)
T ss_dssp --SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 88888777655543
No 64
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.90 E-value=0.011 Score=58.83 Aligned_cols=148 Identities=12% Similarity=0.114 Sum_probs=94.8
Q ss_pred cccchHHHHHHHHHhhhhhh-hhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
.|+-++|-..+.+..+.+|+ ..++.|....+.|+. +................+..+..++. +..|.+|.-+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~T~~e~l~ 73 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINN-------GAYTMPEYLE 73 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCchhHHHH
Confidence 35556667777776666554 456677777777753 22222222222233334444443321 5679999999
Q ss_pred HHhccc-ccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCch
Q 013427 84 MCLGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 162 (443)
Q Consensus 84 ~~~G~~-~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 162 (443)
+-||++ .+.+..+...+..+......+...+..++.+.+ .+.+...++..++++.......++..
T Consensus 74 ~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------------i~~~~~~ii~~~i~~~Yt~~GG~~av 139 (407)
T TIGR00813 74 KRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------------LDLYLSLLLLGAITILYTVFGGLKAV 139 (407)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHHHHHHHHcchHHH
Confidence 999984 677777777888888888888888888887652 22334445555555666677788888
Q ss_pred hhHHHHHHHHHH
Q 013427 163 QSLSVIAAVMSF 174 (443)
Q Consensus 163 ~~~s~~~~~~~~ 174 (443)
.+...+-.+..+
T Consensus 140 ~~Td~iQ~~i~~ 151 (407)
T TIGR00813 140 VWTDTIQAVIMI 151 (407)
T ss_pred HHHHHHHHHHHH
Confidence 888877765544
No 65
>PRK11017 codB cytosine permease; Provisional
Probab=97.88 E-value=0.013 Score=58.25 Aligned_cols=174 Identities=13% Similarity=0.087 Sum_probs=91.9
Q ss_pred cccHHHHHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhh
Q 013427 75 NRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILS 154 (443)
Q Consensus 75 ~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~ 154 (443)
..++..+.+..||.+|..+..+...+...|-........++.+..+.+ .+...+.+++.++..+.+
T Consensus 70 G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~--------------~~~~~~~~i~~~l~~~~~ 135 (404)
T PRK11017 70 GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG--------------LDINLLIVLSGLLMTVTA 135 (404)
T ss_pred CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHH
Confidence 358899999999999999988888888877666666666665555331 112234555555555555
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhc-ccceehHhh
Q 013427 155 QAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAY-PYSLILIEI 233 (443)
Q Consensus 155 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i 233 (443)
..+ .|.+++++.++........+...+..+ .+.+..+ ...+.+..+ . ..+..++...+-.+ ..-.+.++.
T Consensus 136 ~~G-~~~i~~~~~~~~p~~~~~~~~~~~~~~---~~~~g~~-~~~~~~~~~-~---~~~~~a~~~~~g~~~~~~~~~~Dy 206 (404)
T PRK11017 136 YFG-ISALTILSRIAVPAIALLGGYSVWLAV---NDVGGLD-GLKAIVPAE-P---LDFSAALTLVVGSFISGGTLTADF 206 (404)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCchh-hhhcCCCCC-c---ccHHHHHHHHHHHHHHhHhcCCCh
Confidence 443 455555555554433322121111111 1111111 111111111 1 22333333322222 245678899
Q ss_pred hhhcCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhccccC
Q 013427 234 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 275 (443)
Q Consensus 234 ~~~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~ 275 (443)
.|..|++ |+.......+..+...+-..+|.......|+
T Consensus 207 sRy~k~~----~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 207 VRFGRSA----KIAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred HhhccCc----cceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9998865 4444555566556666566666655555554
No 66
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.72 E-value=0.084 Score=54.76 Aligned_cols=146 Identities=12% Similarity=0.052 Sum_probs=88.0
Q ss_pred ccchHHHHHHHHHhhhhh-hhhhhHHHHHHhcCccHHHHHHHHHHHHHH-HHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 6 FEGTLWTAVAHIITGVIG-SGVLSLAWSMAQLGWIAGPLAMVIFASVTL-FATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
|+-++|...+.+..+.++ ...++.|-...+.|+- +.... +...+.+ ....++.+-.|+. +..|.+|.-+
T Consensus 67 r~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~-~g~~~~~~i~~~~~a~~lrr~-------g~~T~~d~l~ 137 (549)
T TIGR02711 67 GNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYS-LGFLVGWPIILFLIAERLRNL-------GRYTFADVAS 137 (549)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHH-HHHHHHHHHHHHHHHHHHHHc-------CCccHHHHHH
Confidence 444566666666666554 5677888777777764 22211 1111111 1223333333222 4579999999
Q ss_pred HHhcc-cccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCch
Q 013427 84 MCLGK-TNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 162 (443)
Q Consensus 84 ~~~G~-~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 162 (443)
+-||. ..|.+..+...+..+......+...+..++.+++ .+.+.-+++..++++.......++..
T Consensus 138 ~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGm~av 203 (549)
T TIGR02711 138 YRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------------LNYHVAVVLVGILMVMYVLFGGMLAT 203 (549)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 98974 4677777777777777777777777777776642 23334455566666666677778888
Q ss_pred hhHHHHHHHHHH
Q 013427 163 QSLSVIAAVMSF 174 (443)
Q Consensus 163 ~~~s~~~~~~~~ 174 (443)
.++..+-.+..+
T Consensus 204 ~~td~iQ~~im~ 215 (549)
T TIGR02711 204 TWVQIIKAVLLL 215 (549)
T ss_pred HHHHHHHHHHHH
Confidence 888777755443
No 67
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.60 E-value=0.042 Score=54.40 Aligned_cols=174 Identities=15% Similarity=0.097 Sum_probs=98.8
Q ss_pred HHHHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCC
Q 013427 79 LEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPD 158 (443)
Q Consensus 79 ~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 158 (443)
-.+++..||.+|.++..+.+.+.+.|-...-.+..++..... ...+...+.++..+++...++..
T Consensus 84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~--------------~~~~~~~~ili~g~l~~l~~ifG- 148 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG--------------TGLPVWAGILIIGVLMTLVTIFG- 148 (442)
T ss_pred heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC--------------CCCcHHHHHHHHHHHHHHHHHHh-
Confidence 456889999999999999999999999998888888761111 12445566666666655555442
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcc-cceehHhhhhhc
Q 013427 159 FHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYP-YSLILIEIQDTL 237 (443)
Q Consensus 159 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m 237 (443)
.|.++.++..+....+. .....++...+.......... +. ..+..++..+++..+-.+. .-+...+..|-+
T Consensus 149 ~r~l~~l~~~a~~~~~~----lf~~l~~~~~~~~~~~~~~~~-~~---~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~ 220 (442)
T COG1457 149 YRALHKLERIAVPLLLL----LFLYLLALLFRSKGGLDALWV-KG---PTSPLSFLSALSLVIGSFASWGPYAADYSRYA 220 (442)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhcccccceeec-cC---CCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 34444444444443332 112223333332211111111 10 1112233333333222222 556678889999
Q ss_pred CCCCccccchhhhhHHHHHHHHHHHHhhhhhhhccccCcc
Q 013427 238 KSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 277 (443)
Q Consensus 238 ~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~ 277 (443)
|+|+| ++.-.....+......+-...|.....+-|+..
T Consensus 221 ~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~ 258 (442)
T COG1457 221 PSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD 258 (442)
T ss_pred CCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 97732 244445556666666677777888777777765
No 68
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.53 E-value=0.065 Score=52.43 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=42.4
Q ss_pred HHHhhhhhhhhhhHHHHHH-hcC--ccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhcccccc
Q 013427 16 HIITGVIGSGVLSLAWSMA-QLG--WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAW 92 (443)
Q Consensus 16 ~l~~~~iG~GiL~LP~af~-~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~~ 92 (443)
.++.-.+|+|.|-.|-... ++| |..+.+.+++.++..-..... +- ++.| .+|+++.++ .||+...
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av---~~~g----G~~~~l~~~-~g~~f~~ 70 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----AL---ALVG----GGYDSLSAR-IGKVFGI 70 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----ee---eecC----CCHHHHHHH-hChHHHH
Confidence 4566778999999987754 454 567777777777665554443 21 1122 367777665 4555554
Q ss_pred hhhHHH
Q 013427 93 ACSFFV 98 (443)
Q Consensus 93 ~~~i~~ 98 (443)
+..+.+
T Consensus 71 lf~~~~ 76 (378)
T TIGR00796 71 LFTVIL 76 (378)
T ss_pred HHHHHH
Confidence 443333
No 69
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.46 E-value=0.17 Score=51.75 Aligned_cols=152 Identities=7% Similarity=-0.038 Sum_probs=82.2
Q ss_pred ccchHHHHHHHHHhhhhhhh-hhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 6 FEGTLWTAVAHIITGVIGSG-VLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
|+-++|-..+.+..+.+++. .++.|-.....|+.. ........+.......++.+-.++..+ .+++..|.+|.-++
T Consensus 36 r~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~--~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 36 RSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTE--AAHNSITLPDFFEN 112 (487)
T ss_pred CcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhH--hhcCCccHHHHHHH
Confidence 44556666666766666544 566786666777642 211111111112222333332221100 01156799999999
Q ss_pred Hhcccccch---hhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCc
Q 013427 85 CLGKTNAWA---CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 161 (443)
Q Consensus 85 ~~G~~~~~~---~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 161 (443)
-||++.+.+ ..+...+.........+...+..++.+++ .+....+++..++.........++.
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGl~a 178 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------------LDYKTGLLIGALIIVIYTFFGGFLA 178 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999765433 34444444444455566666666666542 2233445555555666667777888
Q ss_pred hhhHHHHHHHHHH
Q 013427 162 IQSLSVIAAVMSF 174 (443)
Q Consensus 162 l~~~s~~~~~~~~ 174 (443)
..+...+-.+..+
T Consensus 179 v~~TD~iQ~~i~~ 191 (487)
T TIGR02121 179 VSWTDFVQGLLMF 191 (487)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777655443
No 70
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.46 E-value=0.034 Score=54.97 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=53.0
Q ss_pred chHHHHHHHHHhhhhhhh-hhhHHHHHHhcCccHHHHHHHHHHHHHH---HHHHHHHHcccCCCCCCCCCCcccH-----
Q 013427 8 GTLWTAVAHIITGVIGSG-VLSLAWSMAQLGWIAGPLAMVIFASVTL---FATFLLCDCHRGPDPEYGPGRNRSY----- 78 (443)
Q Consensus 8 ~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~~~~---~s~~~l~~~~~~~~~~~g~~~~~~y----- 78 (443)
-|-+|+.+..+.+.+|+| ++.+|-+.+.+| ..++.++-+.+++.. |.-..|..-.++. + +..+|
T Consensus 47 iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~---~---~~g~~~GGP~ 119 (425)
T TIGR00835 47 VSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRER---D---ADGVFRGGPM 119 (425)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeee---C---CCCCEecChH
Confidence 468999999999999998 999999977666 656554444444333 3333333333321 1 11224
Q ss_pred HHHHHHHhcccccchhhHH
Q 013427 79 LEAVDMCLGKTNAWACSFF 97 (443)
Q Consensus 79 ~~l~~~~~G~~~~~~~~i~ 97 (443)
.++-+...|||...+..+.
T Consensus 120 yyi~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 120 YYIKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHHHhCccHHHHHHHHH
Confidence 5676677777766666665
No 71
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.34 E-value=0.0024 Score=64.43 Aligned_cols=249 Identities=13% Similarity=0.033 Sum_probs=117.5
Q ss_pred CcccchHHHHHHHHHhhhhhhhhhhHHHHHHhc--CccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHH
Q 013427 4 DDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQL--GWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 81 (443)
Q Consensus 4 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~--G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l 81 (443)
++|+.+.++-+..-....+....+.+-...... ++..+++..++..++...-..+...... +.| .++..+
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~----r~G----l~~~v~ 76 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP----RTG----LPTMVL 76 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH----CC-------HHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc----ccC----CCchhc
Confidence 567777666665555555555544444443223 3344555555444444333333333322 223 478889
Q ss_pred HHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCC---ccccccchhHHHHHHHHHHHhhcCCC
Q 013427 82 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHE---AACEYSDTYYMLIFGAVQLILSQAPD 158 (443)
Q Consensus 82 ~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~pl~~~~~ 158 (443)
++..||.+|..+..+...+...|-........++.+..+.+....+..... ...........+++.++..+... ..
T Consensus 77 sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~g 155 (440)
T PF02133_consen 77 SRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAI-YG 155 (440)
T ss_dssp TTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHC-TH
T ss_pred chhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHh-cC
Confidence 999999999999999999999999999999999999998875421100000 00001111222223333333332 33
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcc-cceehHhhhhhc
Q 013427 159 FHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYP-YSLILIEIQDTL 237 (443)
Q Consensus 159 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m 237 (443)
.+.++.+..+....... ..+........+.+. ++..+.+. + ......+..++...+-.+. .-.+.++..|.+
T Consensus 156 ~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~-~-~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~ 228 (440)
T PF02133_consen 156 MKALRRLAVIAAPILLV---VFIGMLIWALSKAGG--GPLLSAPA-S-PSPSGSFLAAIALVIGSWISWAPNASDYSRYA 228 (440)
T ss_dssp HHHHHHHHHCCHHHHHH---HHHHHHHHHHHHCT---HHHCCS---S-----S-HHHHHHHHHCCCHHHHCCCHHHHTTC
T ss_pred HHHHHhHHhhhhHHHHh---hhhheeEEEeecCCc--chhhhCcc-c-chhHHHHHHHHHHHHhhhhhhhhccccHHhhC
Confidence 45555555444433221 111122222222111 11111110 0 0000023333333322222 335567899999
Q ss_pred CCCCccccchhhhhHHHHHHHHHHHHhhhhhhhcc
Q 013427 238 KSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA 272 (443)
Q Consensus 238 ~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~ 272 (443)
|++ ++-.+....+..........+|.+|...
T Consensus 229 ~~~----~~~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 229 KSD----TSAWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp --H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC----CCcEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 975 5566677777777777777666666544
No 72
>PRK09395 actP acetate permease; Provisional
Probab=97.32 E-value=0.28 Score=51.00 Aligned_cols=146 Identities=12% Similarity=0.048 Sum_probs=88.4
Q ss_pred ccchHHHHHHHHHhhhhhh-hhhhHHHHHHhcCccHHHHHHHHHHHHHH-HHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 6 FEGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTL-FATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
|+-++|...+.+..+.+++ ..++.|-.....|+.. .. ..+...+.+ ....++.+-.++. +..|++|.-+
T Consensus 69 r~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~-~~~~~~~g~~~~~~~~~~~~r~~-------g~~T~~d~l~ 139 (551)
T PRK09395 69 GGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LI-YSIGFLVGWPIILFLIAERLRNL-------GKYTFADVAS 139 (551)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HH-HHHHHHHHHHHHHHHHHHHHhhC-------CCccHHHHHH
Confidence 4455666667666666654 4567887777778642 11 111111111 1122233322221 4589999999
Q ss_pred HHhcc-cccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCch
Q 013427 84 MCLGK-TNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 162 (443)
Q Consensus 84 ~~~G~-~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 162 (443)
+-||+ ..|.+..+...+..+......+...+..++.+++ .+.+..+++..++.+.......++..
T Consensus 140 ~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~~iYt~~GGm~av 205 (551)
T PRK09395 140 YRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLMMVYVLFGGMLAT 205 (551)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 99995 4777777777776667667777777777766542 33444455666666666777778887
Q ss_pred hhHHHHHHHHHH
Q 013427 163 QSLSVIAAVMSF 174 (443)
Q Consensus 163 ~~~s~~~~~~~~ 174 (443)
.+...+-.+..+
T Consensus 206 ~~TD~iQ~iim~ 217 (551)
T PRK09395 206 TWVQIIKAVLLL 217 (551)
T ss_pred HHHHHHHHHHHH
Confidence 777776654443
No 73
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.12 E-value=0.41 Score=49.10 Aligned_cols=152 Identities=9% Similarity=-0.029 Sum_probs=84.3
Q ss_pred cccchHHHHHHHHHhhhhhhhh-hhHHHHHHhcCccHHHHHHHHHHHHH-HHHHHHHHHcccCCCCCCCCCCcccHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGV-LSLAWSMAQLGWIAGPLAMVIFASVT-LFATFLLCDCHRGPDPEYGPGRNRSYLEAV 82 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~g~i~l~~~~~~~-~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~ 82 (443)
.|+-++|-..+.+..+.+++.. ++.|-...+.|+..- ...+...+. .....++.+-.+... +.+. +..|.+|.-
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~--~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~-~~~T~~e~l 114 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISES--WIAIGLTLGAWINWKLVAGRLRVHT-EYNN-NALTLPDYF 114 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-CceeHHHHH
Confidence 3555677777777666665554 558888778886421 111111111 111122111111000 0000 467999999
Q ss_pred HHHhcccccc---hhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCC
Q 013427 83 DMCLGKTNAW---ACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDF 159 (443)
Q Consensus 83 ~~~~G~~~~~---~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 159 (443)
++-||++.+. +..+...+.....+.+.+...+..++.+++ .+.+..+++..++++.......+
T Consensus 115 ~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GGl 180 (502)
T PRK15419 115 TGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAAATILYTFIGGF 180 (502)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhhhH
Confidence 9999976543 344444445555555556666666666542 23344555666666777778888
Q ss_pred CchhhHHHHHHHHHH
Q 013427 160 HNIQSLSVIAAVMSF 174 (443)
Q Consensus 160 ~~l~~~s~~~~~~~~ 174 (443)
+...+...+-.+..+
T Consensus 181 ~aV~~TD~iQ~~imi 195 (502)
T PRK15419 181 LAVSWTDTVQASLMI 195 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877765444
No 74
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.08 E-value=0.49 Score=49.20 Aligned_cols=148 Identities=8% Similarity=-0.034 Sum_probs=91.7
Q ss_pred cccchHHHHHHHHHhhhhhh-hhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
.|+-++|...+.+..+.+++ ..++.|-...+.|+-.-...+ ...........++.+-.++. +..|.+|.-+
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~p~~rr~-------~~~T~~e~l~ 102 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLM-GWTGGYVLLALLLAPYLRKF-------GKYTVPDFIG 102 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHC-------CCccHHHHHH
Confidence 35666788788887777754 566788776667763211111 11111112234444444332 4578899899
Q ss_pred HHhccc-ccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCch
Q 013427 84 MCLGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 162 (443)
Q Consensus 84 ~~~G~~-~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 162 (443)
+-||++ .+.+..+...+..+......+...+..++.++. .+.+..+++..++.+.......++..
T Consensus 103 ~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~i~~iYt~~GG~~aV 168 (552)
T TIGR03648 103 DRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------------VDFETGVFIGMAIVFFYAVLGGMKGV 168 (552)
T ss_pred HHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999855 577777777777777777777777777777652 23334455556666666677778888
Q ss_pred hhHHHHHHHHHH
Q 013427 163 QSLSVIAAVMSF 174 (443)
Q Consensus 163 ~~~s~~~~~~~~ 174 (443)
.+.-.+-.+..+
T Consensus 169 ~~TD~iQ~iim~ 180 (552)
T TIGR03648 169 TWTQVAQYIVLI 180 (552)
T ss_pred HHHHHHHHHHHH
Confidence 877777654433
No 75
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.95 E-value=0.5 Score=47.20 Aligned_cols=201 Identities=13% Similarity=0.167 Sum_probs=99.9
Q ss_pred CcccHHHHHHHHhccccc---chhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccC---CCCccccccchhHH--HH
Q 013427 74 RNRSYLEAVDMCLGKTNA---WACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHRE---GHEAACEYSDTYYM--LI 145 (443)
Q Consensus 74 ~~~~y~~l~~~~~G~~~~---~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~~--~i 145 (443)
...+|+.+.+..||-+|. .+......+.-||. ..-..+..+.-++.....+.. +.......+...++ ++
T Consensus 101 ~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGv---qty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~i 177 (497)
T COG1953 101 YGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGV---QTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFI 177 (497)
T ss_pred cCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHH
Confidence 457999999999999875 34455555555553 333445555555544322211 10111122333333 22
Q ss_pred HHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCc--cccccccCCCCchhHHHHHHHHHHHHHHhh
Q 013427 146 FGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGF--VMGSFSGVSTTTSIEKMWLVAQALGDIAFA 223 (443)
Q Consensus 146 ~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa 223 (443)
+-++-+ +++.+..+++|++...+..++...+.- ..++...+-+. ...+.+. ...+.....|.+...+...+=.
T Consensus 178 fW~l~~-l~~~~g~~~Ir~~~~~a~p~~~~~~~g---l~Iw~~~~a~g~~~~~~~p~-~~~~~~~~~w~~~~~~~~~v~~ 252 (497)
T COG1953 178 FWVLQL-LVLFKGMESIRKFETWAGPLVYIAMLG---LAIWALVKAGGSSILGELPA-GTVSGSNSSWAFLAGIAAWVGF 252 (497)
T ss_pred HHHHHH-HHHhcCHHHHHHHHHHhchHHHHHHHH---HHHHHHHhcCCcCccccCCC-CCCCcchhHHHHHHHHHHHHHH
Confidence 223223 334566888888877776666543333 33333222221 1111110 0122333344444444333333
Q ss_pred cc-cceehHhhhhhcCCCCccccchhhhhHHHHHH----HHHHHHhhhhhhhccccCcc--ccccccccc
Q 013427 224 YP-YSLILIEIQDTLKSPPPANQTMKKASTMSIIT----TTIFYLFCGGFGYAAFGDNT--PGNLLTGFG 286 (443)
Q Consensus 224 f~-~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~----~~~~y~~~g~~gy~~fg~~~--~~~il~~~~ 286 (443)
|. ..-|.|+.-|.-|+| |.-..--.++.-+ ..++=...+-..+..||+.. +.++.+++.
T Consensus 253 ~Atl~lN~~DFsRfa~s~----~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~ 318 (497)
T COG1953 253 WATLALNIPDFTRFAKSQ----KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFL 318 (497)
T ss_pred HHHHhcCCchhhcccCCh----hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhc
Confidence 33 567889999999986 2222222233333 33333344455677889885 456777775
No 76
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.53 Score=46.59 Aligned_cols=45 Identities=16% Similarity=0.022 Sum_probs=40.0
Q ss_pred cHHHHHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHH
Q 013427 77 SYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQ 121 (443)
Q Consensus 77 ~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~ 121 (443)
+..|..++.++|+..++..+...+....++++-.+..+--++-+.
T Consensus 78 ~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 78 GLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred cHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 788999999999999999999999999999999988888877764
No 77
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.45 E-value=1.1 Score=44.46 Aligned_cols=226 Identities=12% Similarity=0.008 Sum_probs=119.3
Q ss_pred hhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhc-ccccchhhHHHHHHh
Q 013427 24 SGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLG-KTNAWACSFFVHVGL 102 (443)
Q Consensus 24 ~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G-~~~~~~~~i~~~~~~ 102 (443)
++.|.+|-...-.|+- |.+- .+++..-|....+.-+-+. ++- ...|++|....-++ ++.|++..+...+..
T Consensus 60 ASflGiag~I~~~GYd-G~~Y--~iG~~~Gy~i~~fL~A~~L--Rk~---GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs 131 (529)
T COG4147 60 ASFLGIAGLIFISGYD-GLIY--SIGWTGGYPILLFLIAEYL--RKL---GKYTFADFIADRYKSNPARLLAAIGTIIVS 131 (529)
T ss_pred HhhhchhHhhhhcccc-hHHH--HHHHHHHHHHHHHHHHHHH--Hhc---CCcchHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 4455566555555543 2211 2233444443333332211 112 34799997666555 457888888888888
Q ss_pred hhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 013427 103 YGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFG 182 (443)
Q Consensus 103 ~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 182 (443)
+...++.+...+..+.-+++ .+...-+++..+++.....+..++...|+..+--+......++..+
T Consensus 132 ~~YliaQmvGaG~li~~l~g--------------v~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai 197 (529)
T COG4147 132 FLYLIAQMVGAGLLISLLLG--------------VPYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAI 197 (529)
T ss_pred HHHHHHHHHhhHHHHHHHhC--------------CCceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888763 2233445566666666677888899888887764433322222222
Q ss_pred HHHHHHhhCC-cccc---ccccC--C-C-CchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCccccchhhhhHHH
Q 013427 183 LGVAKVIGNG-FVMG---SFSGV--S-T-TTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMS 254 (443)
Q Consensus 183 ~~~~~~~~~~-~~~~---~~~~~--~-~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s 254 (443)
....+.-.+. +... ..... + + .++.....+-.+.++...--..+..-+|.+.-.--. .|+.|+.+|.+..+
T Consensus 198 ~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfT-vp~~k~AR~Sv~wA 276 (529)
T COG4147 198 MIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFT-VPDAKEARKSVFWA 276 (529)
T ss_pred HHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEe-cCcHHHHHHHHHHH
Confidence 2222221111 0000 00000 0 0 111001111222222222222244444554433322 24568899999999
Q ss_pred HHHHHHHHHhhhhhhhcc
Q 013427 255 IITTTIFYLFCGGFGYAA 272 (443)
Q Consensus 255 ~~~~~~~y~~~g~~gy~~ 272 (443)
......+|+..-..|+.+
T Consensus 277 ~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 277 TGFIGIFYILTPIIGAGA 294 (529)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999877777654
No 78
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.36 E-value=0.083 Score=50.62 Aligned_cols=104 Identities=18% Similarity=0.154 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhccc
Q 013427 10 LWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKT 89 (443)
Q Consensus 10 ~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~ 89 (443)
-|-..-|=+.++-|+|.+.=|..-.+-||+++.+++++.+++.---.....-.... +..| ++.+|++++..||+
T Consensus 54 ~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~Sv--R~~G----~Si~~i~~~~lG~~ 127 (376)
T PF02554_consen 54 KWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASV--RHKG----KSIGEIAGKYLGKR 127 (376)
T ss_pred hHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhh--cCCC----ccHHHHHHHHHHHH
Confidence 45667777899999999999999999999999999998888776666655544321 1233 59999999999999
Q ss_pred ccchhhHHHHHHhhhhhHHHHHHHHhhHHH
Q 013427 90 NAWACSFFVHVGLYGTAIAYTVTSAISMRA 119 (443)
Q Consensus 90 ~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~ 119 (443)
++.+..+...+.+.....++....++.+.+
T Consensus 128 ~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 128 AKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999998888888877776654
No 79
>PRK10484 putative transporter; Provisional
Probab=96.31 E-value=1.6 Score=45.02 Aligned_cols=153 Identities=9% Similarity=0.028 Sum_probs=74.8
Q ss_pred ccchHHHHHHHHHhhhhhhh-hhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 6 FEGTLWTAVAHIITGVIGSG-VLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
|+-++|-..+.+..+.++++ .++.|-...+.|+.... ..............++.+-.++. +..|.+|.-++
T Consensus 38 R~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r~-------~~~T~~e~l~~ 109 (523)
T PRK10484 38 RSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEVTAAIALIILALIFLPRYLKS-------GITTIPDFLEE 109 (523)
T ss_pred CCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-------CCccHHHHHHH
Confidence 45556666777766655544 55577766667754211 11111111111222222222211 56799999999
Q ss_pred HhcccccchhhHHHHHHhhhhhHH-HHHHHHhhHHHHHhhhccccCCCCccccccchhHH----HHHHHHHHHhhcCCCC
Q 013427 85 CLGKTNAWACSFFVHVGLYGTAIA-YTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYM----LIFGAVQLILSQAPDF 159 (443)
Q Consensus 85 ~~G~~~~~~~~i~~~~~~~g~~~~-y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~pl~~~~~l 159 (443)
-||++.+.+......+........ .+...+..++++.... .....+..... ++..++.........+
T Consensus 110 Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~--------~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl 181 (523)
T PRK10484 110 RYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVS--------ELLGISYGAAIWLLVWLIGIIGAIYAVFGGL 181 (523)
T ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--------hhcCCcHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 999987766655544443333222 2223333333432110 00012222212 1223334555667778
Q ss_pred CchhhHHHHHHHHHH
Q 013427 160 HNIQSLSVIAAVMSF 174 (443)
Q Consensus 160 ~~l~~~s~~~~~~~~ 174 (443)
+...+...+-.+..+
T Consensus 182 ~aV~~TD~iQ~vim~ 196 (523)
T PRK10484 182 KAVAVSDTINGIGLL 196 (523)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877765544
No 80
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.35 E-value=2.5 Score=41.30 Aligned_cols=77 Identities=13% Similarity=0.235 Sum_probs=51.8
Q ss_pred cHHHHHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhc-
Q 013427 77 SYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQ- 155 (443)
Q Consensus 77 ~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~- 155 (443)
+..|..++.+||+..++..+...+.......+-+...+.-++-+. ..+...+.++..+..+.+.+
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~--------------g~~~~~~~~~~~~~~~~ll~~ 108 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF--------------GIPLWIWVLLVAVIAILLLWL 108 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------CCCcHHHHHHHHHHHHHHHHH
Confidence 778888999999998888888888888888877777766665543 13344555555554444444
Q ss_pred -CCCCCchhhHHH
Q 013427 156 -APDFHNIQSLSV 167 (443)
Q Consensus 156 -~~~l~~l~~~s~ 167 (443)
.++.|.+..+..
T Consensus 109 ~~~~y~~~E~~~~ 121 (358)
T PF01566_consen 109 SSGGYRRLERILK 121 (358)
T ss_pred HhccchHHHHHHH
Confidence 556666655543
No 81
>PRK15015 carbon starvation protein A; Provisional
Probab=95.04 E-value=0.26 Score=50.65 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=78.1
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhccccc
Q 013427 12 TAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNA 91 (443)
Q Consensus 12 ~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~ 91 (443)
-.+-|=+.++-|+|.+-=|..-.+-||.++.+++++..++.---..+..-.... ++.| ++.+|++++..|++++
T Consensus 87 VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~--R~~G----rSig~ia~~~iG~~~~ 160 (701)
T PRK15015 87 VLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVST--RRDG----RSLGELVKEEMGPTAG 160 (701)
T ss_pred chhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeee--cCCC----ccHHHHHHHHhhHHHH
Confidence 345577889999999999999999999999999998877766555544443321 1233 5999999999999999
Q ss_pred chhhHHHHHHhhhhhHHHHHHHHhhHH
Q 013427 92 WACSFFVHVGLYGTAIAYTVTSAISMR 118 (443)
Q Consensus 92 ~~~~i~~~~~~~g~~~~y~i~~~~~l~ 118 (443)
.+..+...+.......++...+.+.+.
T Consensus 161 ~lfli~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 161 VIALVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998888888777777777666666553
No 82
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.52 E-value=0.68 Score=45.40 Aligned_cols=79 Identities=13% Similarity=0.226 Sum_probs=60.3
Q ss_pred CcccHHHHHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHh
Q 013427 74 RNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 153 (443)
Q Consensus 74 ~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl 153 (443)
+..-..+++++.||+.|+.+..+...+.|+.++++.....+|.+.++.+ ..+++.|.++..+..+.+
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------------k~~y~~~v~~~~l~s~~i 319 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------------KLSYKTWVIVFTLFSFIV 319 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999999999999999999888642 255677777766665555
Q ss_pred hcCCCCCchhhHH
Q 013427 154 SQAPDFHNIQSLS 166 (443)
Q Consensus 154 ~~~~~l~~l~~~s 166 (443)
+.. .++++-.++
T Consensus 320 a~~-Gl~~Ii~~~ 331 (378)
T TIGR00796 320 ANL-GLTQIISIS 331 (378)
T ss_pred HHh-CHHHHHHHH
Confidence 543 344444433
No 83
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.21 E-value=0.55 Score=46.60 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=75.3
Q ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhcccccchhhHHHHHHhhhhhHHH
Q 013427 30 AWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAY 109 (443)
Q Consensus 30 P~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y 109 (443)
-.....+|++.++.+.++-+.+.+.....-... ....++..-..+++++.+|+.|..+..+...+.|+-++++-
T Consensus 221 ~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~------~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL 294 (427)
T PF05525_consen 221 KKYTIKAGLIAGILLALIYGGLAYLGATSSGSF------PDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGL 294 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcccc------cCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666555554444444332211111 11111455678899999999999999999999999999999
Q ss_pred HHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcC
Q 013427 110 TVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA 156 (443)
Q Consensus 110 ~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 156 (443)
....+|+.+++.+ ..+++.|..+..++-+.++..
T Consensus 295 ~~a~a~yf~~~~~-------------kisY~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 295 ISACAEYFSELFP-------------KISYKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHHHHhc-------------ccChHHHHHHHHHHHHHHHHh
Confidence 9999999999864 366788888888777766654
No 84
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.85 E-value=7.7 Score=38.65 Aligned_cols=66 Identities=11% Similarity=0.159 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHH-hcC--ccHHHHHHHHHHHH-HHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 9 TLWTAVAHIITGVIGSGVLSLAWSMA-QLG--WIAGPLAMVIFASV-TLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 9 s~~~a~~~l~~~~iG~GiL~LP~af~-~~G--~~~g~i~l~~~~~~-~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
..+...+.++.-..|+|=|=.|-..- ++| |+.+.+.+++.++. -..+...+.+. + .++++++++
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~-----------~-~~~~~l~~~ 71 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKS-----------G-GGIEDLASR 71 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc-----------C-CCHHHHhcc
Confidence 45567888999999999999988754 344 78888888777763 33333333332 1 277777776
Q ss_pred Hh
Q 013427 85 CL 86 (443)
Q Consensus 85 ~~ 86 (443)
+-
T Consensus 72 v~ 73 (427)
T PF05525_consen 72 VG 73 (427)
T ss_pred cC
Confidence 54
No 85
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=93.22 E-value=1.6 Score=42.72 Aligned_cols=119 Identities=15% Similarity=0.182 Sum_probs=82.3
Q ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhcccccchhhHHHHHHhhhhhHHHH
Q 013427 31 WSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYT 110 (443)
Q Consensus 31 ~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~ 110 (443)
.....+|++.++.+.++...+.+.. ..+++..+. .+++.+-..+..++.||+.|..+...+..+.|.-++++-.
T Consensus 224 ~~~~~aglIa~i~La~iY~~L~ylG-----a~s~~~~~~-~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi 297 (431)
T COG1114 224 KYTIKAGLIAAILLALIYLSLFYLG-----ATSASAAGL-AANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLI 297 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-----cchHhhccc-ccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344677777777766666665555 111111111 1113456778899999999999999999999999999999
Q ss_pred HHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHHHH
Q 013427 111 VTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIA 169 (443)
Q Consensus 111 i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 169 (443)
..++|+..++++ ..+++.|..+++++-+.++.+. ++++-..|..-
T Consensus 298 ~a~aefF~~~~p-------------~~SY~~~v~if~i~sflvan~G-L~~Ii~isvPv 342 (431)
T COG1114 298 VACAEFFSKLVP-------------KLSYKTWVIIFTLISFLVANLG-LEQIIKISVPV 342 (431)
T ss_pred HHHHHHHHHhcc-------------cccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence 999999999874 2667788888888777666543 44444444433
No 86
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=92.44 E-value=3.6 Score=42.74 Aligned_cols=224 Identities=12% Similarity=0.097 Sum_probs=111.6
Q ss_pred hHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhcccccchhhHHHHHHhhhhhH
Q 013427 28 SLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAI 107 (443)
Q Consensus 28 ~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~ 107 (443)
=+++..-|+|+...++.+++...+...|..-+...+..- ..+|. --| -+..+.+|+-.+--+....++.+...|.
T Consensus 89 R~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNG-aV~GG---GaY-ymISRsLGpEfGGSIGllFf~anV~~~a 163 (945)
T KOG1288|consen 89 RFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNG-AVRGG---GAY-YMISRSLGPEFGGSIGLLFFVANVFNCA 163 (945)
T ss_pred HHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-ceecC---ceE-EEEEcccCcccCCeeeehhhHHHHhcch
Confidence 357777788888777777766666665554333332211 12221 122 2345677777666666677777777777
Q ss_pred HHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHH----HHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 013427 108 AYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG----AVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGL 183 (443)
Q Consensus 108 ~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~ 183 (443)
.++..+.+-+.+.+....+...+. ..-....+|-.... ..++.+|++. -+.++..+.+..+ ++..
T Consensus 164 m~isG~vE~il~nfG~~a~g~sg~--~~lP~g~ww~fly~t~vl~l~~~vc~lG----salfAkas~i~f~-----~is~ 232 (945)
T KOG1288|consen 164 MNISGFVEPILDNFGKEAQGASGS--QFLPDGYWWRFLYTTLVLALCLIVCLLG----SALFAKASNILFV-----VISV 232 (945)
T ss_pred hhhhhhhHHHHHhcCccccCCccc--ccCCCCcchhhHHHHHHHHHHHHHHHhh----HHHHHhhhhhhhh-----HHHH
Confidence 777766665555443211111111 00112223332222 2233344443 1333333333221 1111
Q ss_pred HHHHH----hhCCcccccc--------cc------CCC--Cch--------------hHHHHHHHHHHHHHHhhccccee
Q 013427 184 GVAKV----IGNGFVMGSF--------SG------VST--TTS--------------IEKMWLVAQALGDIAFAYPYSLI 229 (443)
Q Consensus 184 ~~~~~----~~~~~~~~~~--------~~------~~~--~~~--------------~~~~~~~~~~~~~~~faf~~~~~ 229 (443)
|+... +..++.+... .+ +.. .+. ..+..++-..|+++.-+-.+...
T Consensus 233 s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimA 312 (945)
T KOG1288|consen 233 SLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMA 312 (945)
T ss_pred HHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhc
Confidence 22111 1112221111 00 000 000 01112344566666555555555
Q ss_pred hHhhhhhcCCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 013427 230 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 270 (443)
Q Consensus 230 ~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy 270 (443)
--....|+|+| .|..+|-...+....+++|.++.++.-
T Consensus 313 GAnMSgELk~P---SkSIP~GTl~ava~Tf~~Yvl~~flm~ 350 (945)
T KOG1288|consen 313 GANMSGELKAP---SKSIPKGTLSAVAFTFFVYVLVIFLMG 350 (945)
T ss_pred CCCcCccccCc---cccCCccchHHHHHHHHHHHHHHHHhc
Confidence 66778899998 378999999999999999998766543
No 87
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=90.95 E-value=3.1 Score=42.13 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhccc
Q 013427 10 LWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKT 89 (443)
Q Consensus 10 ~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~ 89 (443)
.+-.+-|=+.++-|+|.+-=|.--+|-||.+|.+++++.+++.---...++-.... ++.| .+.+|++++.+|+.
T Consensus 54 k~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~Sv--R~~G----~Si~~ia~~~lG~~ 127 (575)
T COG1966 54 KWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSV--RHGG----KSIGEIAGKYLGRT 127 (575)
T ss_pred chhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeee--ccCC----ccHHHHHHHHhhhh
Confidence 44566677889999999999999999999999999999888877766666554421 2234 59999999999999
Q ss_pred ccchhhHHHHHHhhhhhHHHHHHHHhhHHH
Q 013427 90 NAWACSFFVHVGLYGTAIAYTVTSAISMRA 119 (443)
Q Consensus 90 ~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~ 119 (443)
.+.+..+...+........+.....+.+.+
T Consensus 128 a~~~~~~~~l~iliiv~Avfa~vv~~~l~~ 157 (575)
T COG1966 128 AKVFFLLLALILLILVGAVFAAVIAKLLAN 157 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999988888887777777666666555544
No 88
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=90.85 E-value=0.81 Score=46.47 Aligned_cols=209 Identities=15% Similarity=0.125 Sum_probs=118.5
Q ss_pred hhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhcccccchhhHHHHHHhhhhh
Q 013427 27 LSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTA 106 (443)
Q Consensus 27 L~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~ 106 (443)
|=++|...|+|+..|.+++..+..++..|..=......+-.-+.| . .| -+..+.+|+..+-.+.+...+.+.-.+
T Consensus 51 lrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~G--g--~y-flis~slg~efggsigiIy~f~~aVa~ 125 (643)
T KOG2083|consen 51 LRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSG--G--VY-FLISRSLGPEFGGSIGIIYAFANAVAT 125 (643)
T ss_pred hhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccC--c--EE-EEEEecccccccchhHHHHHHHHHHHH
Confidence 447999999999999999888888777776533332221111222 1 22 245677888877777888888888888
Q ss_pred HHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013427 107 IAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVA 186 (443)
Q Consensus 107 ~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~ 186 (443)
..|.+..++++.++++...- + -.+. .-.+...+++..+. -..+|.+.+-++..++.+ .++.
T Consensus 126 am~~vgfaEsv~~l~~~~s~--~------~i~g--i~~vt~~ill~i~~----ag~~w~~k~q~~ll~il~-----iai~ 186 (643)
T KOG2083|consen 126 AMYVVGFAESVAHLFETESK--E------MIDG--IGSVTVLILLAINV----AGVEWEAKLQIVLLLILL-----IAIA 186 (643)
T ss_pred HHhhhhHHHHHHHHHHhccH--H------Hhcc--hhHHHHHHHHHhhh----ccchhHHHHHHHHHHHHH-----HHHH
Confidence 89999999999999865210 0 0111 11111222222222 334555555544332111 1222
Q ss_pred HHhhCC---c----------cccccc--cCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCccccchhhhh
Q 013427 187 KVIGNG---F----------VMGSFS--GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAS 251 (443)
Q Consensus 187 ~~~~~~---~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 251 (443)
+...+. + +.+..+ -.|+.++ ..++|+-|++..=+..+...-..+...+|+| ++..++-.
T Consensus 187 ~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~---~~tfF~vf~vfFpaatgilaG~nisGdL~~P---q~~IP~Ga 260 (643)
T KOG2083|consen 187 DFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDP---GYTFFSVFAVFFPAATGILAGANISGDLKDP---QKAIPLGA 260 (643)
T ss_pred HhhhhhccChhhhcccccccchhhcccCCCCCcCC---CCceEeeeeeecchhhhhhccccccCCCCCc---hhhcccch
Confidence 211110 0 000000 0112221 1234455555555555555566778899998 47888999
Q ss_pred HHHHHHHHHHHHhh
Q 013427 252 TMSIITTTIFYLFC 265 (443)
Q Consensus 252 ~~s~~~~~~~y~~~ 265 (443)
..+......+|..+
T Consensus 261 L~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 261 LLAIGVSTLLYLIF 274 (643)
T ss_pred hhhhhhhhhhhhhh
Confidence 99999999999644
No 89
>PRK00701 manganese transport protein MntH; Reviewed
Probab=90.44 E-value=21 Score=35.92 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=33.9
Q ss_pred ccHHHHHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHH
Q 013427 76 RSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAI 120 (443)
Q Consensus 76 ~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l 120 (443)
++..|+.++.+||+..++.-+...+.+.++..+-....+.-++.+
T Consensus 94 ~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 94 RDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred CCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999998887777777777777777766666555543
No 90
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=89.38 E-value=5.8 Score=39.56 Aligned_cols=113 Identities=13% Similarity=0.159 Sum_probs=75.8
Q ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhcccccchhhHHHHHHhhhhhHHHHHH
Q 013427 33 MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVT 112 (443)
Q Consensus 33 f~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~ 112 (443)
...+|.+.++.+.++.+.+.+.... .....+. .+++..-.....++.+|++++.+..+...+.|+-++++-...
T Consensus 228 t~~ag~ia~~~L~~vY~gL~~lGa~----s~~~~~~--~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a 301 (439)
T PRK15433 228 TVWAGLMAGVGLTLLYLALFRLGSD----SASLVDQ--SANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCA 301 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----CcccccC--CCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666665555555554431 1111110 111344566788999999999999999999999999999999
Q ss_pred HHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHH
Q 013427 113 SAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLS 166 (443)
Q Consensus 113 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 166 (443)
.+|.+++..+ .+++.|..+..++.++++... ++++-..+
T Consensus 302 ~a~~f~~~~~--------------isY~~~v~i~~l~S~~lSn~G-~~~II~~s 340 (439)
T PRK15433 302 CAEFFAQYVP--------------LSYRTLVFILGGFSMVVSNLG-LSQLIQIS 340 (439)
T ss_pred HHHHHHhhcC--------------CcHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 9999988642 456788888888888887653 33333333
No 91
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=87.28 E-value=34 Score=34.26 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=44.9
Q ss_pred chHHHHHHHHHhhhhhhhhhhHHHHHH-hcC--ccHHHHHHHHHHH-HHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 8 GTLWTAVAHIITGVIGSGVLSLAWSMA-QLG--WIAGPLAMVIFAS-VTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 8 ~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G--~~~g~i~l~~~~~-~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
...+...+.++.-..|+|=|=.|-..- ++| |..+.+.+++.++ +-..+...+.+. + .+++|+++
T Consensus 8 ~~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~-----------~-g~~~~l~~ 75 (439)
T PRK15433 8 RDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKV-----------G-GGVDSLST 75 (439)
T ss_pred hHHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc-----------C-CCHHHHhh
Confidence 356678899999999999999987754 455 7777777777665 333333333333 1 26777776
Q ss_pred HHh
Q 013427 84 MCL 86 (443)
Q Consensus 84 ~~~ 86 (443)
++-
T Consensus 76 rv~ 78 (439)
T PRK15433 76 PIG 78 (439)
T ss_pred hcc
Confidence 654
No 92
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=86.49 E-value=2.4 Score=42.33 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=95.2
Q ss_pred ccchhhhhHHHHHHHHHH-HHhhhhhhhccccCcccccccccc-cccCchHHHHHHHHHHHHHhHhhccccccchHHHHH
Q 013427 244 NQTMKKASTMSIITTTIF-YLFCGGFGYAAFGDNTPGNLLTGF-GFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFE 321 (443)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~-y~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~~~ 321 (443)
+++.++++..+..+.... .++....++..|+.- .++...+. ...+++.-....+.........++|.+.++......
T Consensus 220 ~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~-~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~t 298 (415)
T COG0814 220 RKNSKKAVRKAILIGSLIALVLYILVGFFVFGCF-GSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIAT 298 (415)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 444555455555555554 557888888888663 33333333 333445555555555666667899999988888766
Q ss_pred HHHHHhcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCC-hHHHHHHhhhhhhhhhHhhhhhHHHH
Q 013427 322 KWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYF 400 (443)
Q Consensus 322 ~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~v~~l~Gs~~~~~l~~ilP~l~~~ 400 (443)
+.++....-.+..++ .- +..+....|..........+.+.++..|. +...++.+|++.....+-++|.++++
T Consensus 299 SFlgv~lg~~~~~~~-----~~--~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~ 371 (415)
T COG0814 299 SFLGVYLGLFEGLAD-----LF--KKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFI 371 (415)
T ss_pred HHhCchhhHHHhhhH-----HH--HhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 644332111000000 00 00133444666666666677777777785 78899999999999999999999999
Q ss_pred HHhcC
Q 013427 401 KQMNI 405 (443)
Q Consensus 401 ~~~~~ 405 (443)
+-++.
T Consensus 372 ~p~~~ 376 (415)
T COG0814 372 KPRKL 376 (415)
T ss_pred HHHHh
Confidence 86543
No 93
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=85.93 E-value=41 Score=33.86 Aligned_cols=262 Identities=13% Similarity=0.082 Sum_probs=130.0
Q ss_pred ccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCc--cHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 6 FEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGW--IAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~--~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
|+=++|+-+.-=....++.+.--...+--+.|+ ..+++.+.+.-. .+...++-. .++|.+=+.+++-..+
T Consensus 54 Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~---~~~~f~~ln-----s~~G~~yhIsFpv~sR 125 (572)
T KOG2466|consen 54 RTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYL---FTAIFLVLN-----SRPGSDYHISFPVLSR 125 (572)
T ss_pred ccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHH---HHHHHHHHc-----cCCCcccccceeeeee
Confidence 344566665555566666666666666666773 444444332222 222222222 2345434567777888
Q ss_pred HHhccccc---chhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccc----cCCCCccccccchhHH--HHHHHHHHHhh
Q 013427 84 MCLGKTNA---WACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYH----REGHEAACEYSDTYYM--LIFGAVQLILS 154 (443)
Q Consensus 84 ~~~G~~~~---~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~----~~~~~~~~~~~~~~~~--~i~~~~~~pl~ 154 (443)
..||-++. .+..+.+.+..||... -..++.++-+++....+ ++... ....++.+++ .++-++.+|..
T Consensus 126 ~sFGiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~-~~~~tt~e~i~FfIFwv~s~~~~ 201 (572)
T KOG2466|consen 126 SSFGIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLG-KPGTTTYEFIGFFIFWVASLPFY 201 (572)
T ss_pred eehhhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccC-CCCCchHHHHHHHHHHHHhhhee
Confidence 88887754 4555666666665432 34455555555433222 11111 1224445554 45556667766
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccc-CCCCchhHHHHHHHHHHHHHHhhcc-cceehHh
Q 013427 155 QAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSG-VSTTTSIEKMWLVAQALGDIAFAYP-YSLILIE 232 (443)
Q Consensus 155 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~ 232 (443)
+.| .+++|.+-....+.+....+-.++..+ .+-+. -+++.+ -.+.+.....|.+..++...+-.|. ...|.|.
T Consensus 202 ~~~-p~~ir~lf~~ka~~t~fA~~g~LIw~l---~kAhG-~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pD 276 (572)
T KOG2466|consen 202 WFP-PYKIRHLFTWKAVLTPFAAFGFLIWLL---KKAHG-LGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPD 276 (572)
T ss_pred ecc-HHHhhhHHHHHHhhhHHHHHHHHHHHH---HhcCC-ccccccCCCcccccchhHHHHHHHHHHHhccchhhccCch
Confidence 654 455555544444444332222222222 22221 112211 1123344455766666665555555 6677888
Q ss_pred hhhhcCCCCccccchhhh--hHHHHHHHHHHHHhhhhhhhccccCcccc--ccccccc
Q 013427 233 IQDTLKSPPPANQTMKKA--STMSIITTTIFYLFCGGFGYAAFGDNTPG--NLLTGFG 286 (443)
Q Consensus 233 i~~~m~~p~~~~~~~~~~--~~~s~~~~~~~y~~~g~~gy~~fg~~~~~--~il~~~~ 286 (443)
.-|--|+|.+ .-+... +-+.+.+..++=++.+-.++..||.+--+ ++++++-
T Consensus 277 FsRF~ksp~a--~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l 332 (572)
T KOG2466|consen 277 FSRFAKSPNA--IWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWL 332 (572)
T ss_pred hHhhcCCCCc--cchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHh
Confidence 8888887621 233332 22334444444445556677788886633 4455543
No 94
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=79.55 E-value=70 Score=31.89 Aligned_cols=79 Identities=24% Similarity=0.299 Sum_probs=46.5
Q ss_pred chHHHHHHHHHhhhhhhhhhh-HHHHHHhcCccHHHHHHHHHHHH---HHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 8 GTLWTAVAHIITGVIGSGVLS-LAWSMAQLGWIAGPLAMVIFASV---TLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 8 ~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~~---~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
-|-+||.+.-+.+.+|+|=++ ..-|.. .|-+.++.++-+.+++ +-|+=..|.+-+|+.+ +.|+ -.-.=.-..+
T Consensus 19 iS~fqA~~~ala~~vG~GNI~GVa~AI~-~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~-~~G~-~~GGP~yyi~ 95 (416)
T PF01235_consen 19 ISPFQALCTALAGTVGTGNIAGVATAIA-IGGPGAIFWMWISALLGMATKYAEVTLAQKYREKD-EDGE-YRGGPMYYIE 95 (416)
T ss_pred cChHHHHHHHHHhccCcchHHHHHHHHH-hhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEEC-CCCC-EeecHHHHHH
Confidence 368999999999999999655 777776 4445566665555554 4444445555554422 1221 1112223456
Q ss_pred HHhccc
Q 013427 84 MCLGKT 89 (443)
Q Consensus 84 ~~~G~~ 89 (443)
+.+|++
T Consensus 96 ~gl~~k 101 (416)
T PF01235_consen 96 KGLGSK 101 (416)
T ss_pred HHhccc
Confidence 666654
No 95
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=74.00 E-value=97 Score=30.70 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHH-hcC--ccHHHHHHHHHHH
Q 013427 9 TLWTAVAHIITGVIGSGVLSLAWSMA-QLG--WIAGPLAMVIFAS 50 (443)
Q Consensus 9 s~~~a~~~l~~~~iG~GiL~LP~af~-~~G--~~~g~i~l~~~~~ 50 (443)
+.+...+.++.-..|+|=+-.|-..- ++| +..+.+.+++.++
T Consensus 6 ~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgV 50 (431)
T COG1114 6 DIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGV 50 (431)
T ss_pred hHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHh
Confidence 35578888999999999988887654 344 5566666666555
No 96
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=73.45 E-value=85 Score=32.68 Aligned_cols=243 Identities=14% Similarity=0.097 Sum_probs=110.7
Q ss_pred ccchHHHHHHHHHhhhhhhh-hhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 6 FEGTLWTAVAHIITGVIGSG-VLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
|+=.+|...+.++.+.+|++ ++++|--..+.|.-.....+ .......++..... .-..+- +..+-.|--++
T Consensus 45 r~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~-----~~l~~~~~~~~~f~--Pvf~~~-~v~~~~eYl~~ 116 (585)
T KOG2349|consen 45 RSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEW-----NALLSVLLLGWIFI--PVFYRL-GVTTMYEYLEK 116 (585)
T ss_pred CcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHH-----HHHHHHHhhheEEE--EEEEec-CeeehhHHHHH
Confidence 33345666677777777665 56677776666643222211 11111112211110 000000 34555667888
Q ss_pred HhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhh
Q 013427 85 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQS 164 (443)
Q Consensus 85 ~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 164 (443)
-||+..+.+..+...+..+--...++..-+-.+++.... +.....++..++.........+++.-+
T Consensus 117 Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~--------------~~~l~~~~~~~ic~~YT~~GGlkaVi~ 182 (585)
T KOG2349|consen 117 RFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGI--------------NLYLIVVILGLICVFYTALGGLKAVIW 182 (585)
T ss_pred HhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhcc--------------CceeehHHHHHHHHHHHHhcCeeEEEE
Confidence 888887776666666655554444444444444444321 111112223333333444555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh------CCcccccc--c--cCCCCchhHHHHHHHH-HHHHHHhhcccceehHhh
Q 013427 165 LSVIAAVMSFAYSFIGFGLGVAKVIG------NGFVMGSF--S--GVSTTTSIEKMWLVAQ-ALGDIAFAYPYSLILIEI 233 (443)
Q Consensus 165 ~s~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~--~--~~~~~~~~~~~~~~~~-~~~~~~faf~~~~~~~~i 233 (443)
+-.+-....+.-...+.+.+..+.-. ....++.. . -.+|.+..+..|.++. ....-.-.|..+.+. +
T Consensus 183 TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~--V 260 (585)
T KOG2349|consen 183 TDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLI--V 260 (585)
T ss_pred hhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHH--H
Confidence 66665554443222222222221100 00001111 1 0122222334565443 333333344455544 4
Q ss_pred hhhcCCCCccccchhhhhHHHHHHHHHHHH---hhhhhhhcccc
Q 013427 234 QDTLKSPPPANQTMKKASTMSIITTTIFYL---FCGGFGYAAFG 274 (443)
Q Consensus 234 ~~~m~~p~~~~~~~~~~~~~s~~~~~~~y~---~~g~~gy~~fg 274 (443)
+|-+.-| +.|+.++..........+... ..|+.-|..|-
T Consensus 261 QR~lsl~--slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~ 302 (585)
T KOG2349|consen 261 QRYLSLP--SLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYT 302 (585)
T ss_pred hHHhccc--cHHHhhhhhhhhhhHHHHHHHhhcccceeEeeecc
Confidence 5555532 448888877766666555544 45555555553
No 97
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=73.35 E-value=1e+02 Score=30.79 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhhhhhhhhhh-HHHHHHhcCccHHHHHHH---HHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 9 TLWTAVAHIITGVIGSGVLS-LAWSMAQLGWIAGPLAMV---IFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 9 s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~~g~i~l~---~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
|.+|+.+.-+.+.+|+|=++ .+-|.+.+| +.++.++= +.+..+-|.=..|.+-+|..++ .|+-+- .=.-.-++
T Consensus 64 S~FqAl~~sla~~VGtGNIaGVAtAI~~GG-PGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~-~G~~~G-GP~yYi~k 140 (452)
T COG1115 64 SSFQALMTSLAARVGTGNIAGVATAIALGG-PGAVFWMWIVALFGMATKFAESTLAQKYRVKDK-DGEYRG-GPAYYIEK 140 (452)
T ss_pred ChHHHHHHHHHhccCcchHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHHHHhheeEeCC-CCCCcC-ChHHHHHh
Confidence 68999999999999999665 777776444 44555444 4445555655566666654432 221011 11112445
Q ss_pred Hhccc-ccchhhHHHHHHhhh--hhHHHHHHHHhhHHH
Q 013427 85 CLGKT-NAWACSFFVHVGLYG--TAIAYTVTSAISMRA 119 (443)
Q Consensus 85 ~~G~~-~~~~~~i~~~~~~~g--~~~~y~i~~~~~l~~ 119 (443)
-+|.+ ...+.. ...+..+| .+......+++.+++
T Consensus 141 Gl~~r~l~v~FA-~~li~afg~i~n~vQ~NsIa~a~~~ 177 (452)
T COG1115 141 GLGMRWLAVLFA-FALIAAFGFIGNGVQSNSIASALAN 177 (452)
T ss_pred hcCCcHHHHHHH-HHHHHHHHhhcchhhHHHHHHHHHH
Confidence 55533 334444 33333333 455555555555554
No 98
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=72.50 E-value=1e+02 Score=30.43 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=49.9
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcC--ccHHHHHHHHHHHHHHHHHH-HHHHcccCCCCCCCCCCcccHHHHHHHHhccccc
Q 013427 15 AHIITGVIGSGVLSLAWSMAQLG--WIAGPLAMVIFASVTLFATF-LLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNA 91 (443)
Q Consensus 15 ~~l~~~~iG~GiL~LP~af~~~G--~~~g~i~l~~~~~~~~~s~~-~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~ 91 (443)
+....+-+|.|-++ +..++| +-...++.++.+.+..+... +-.|.. ..+| .+-.|++++.++|+.+
T Consensus 11 ~lva~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg----~vTg----~~l~~~~r~~~~~~~~ 79 (390)
T TIGR01197 11 FLMSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLG----VVTG----LDLAEVCREHYPKVPR 79 (390)
T ss_pred HHHHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhe----eecC----CCHHHHHHHHCCCchH
Confidence 33444556666665 223444 33444444444443333333 222322 2233 4889999999999877
Q ss_pred chhhHHHHHHhhhhhHHHHHHHHhhHHHH
Q 013427 92 WACSFFVHVGLYGTAIAYTVTSAISMRAI 120 (443)
Q Consensus 92 ~~~~i~~~~~~~g~~~~y~i~~~~~l~~l 120 (443)
+..-+...+...++..+-....+.-++-+
T Consensus 80 ~~~~~~~~l~ii~~~~~e~~G~a~al~ll 108 (390)
T TIGR01197 80 ITLWILAELAIIATDMAEVIGTAIALNLL 108 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555544555555555444444443
No 99
>PHA02764 hypothetical protein; Provisional
Probab=71.59 E-value=21 Score=33.88 Aligned_cols=89 Identities=12% Similarity=0.060 Sum_probs=49.3
Q ss_pred ccchHHHHHH-HHHhhhhhhhhhhHHHHHHhc--CccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHH
Q 013427 6 FEGTLWTAVA-HIITGVIGSGVLSLAWSMAQL--GWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 82 (443)
Q Consensus 6 ~~~s~~~a~~-~l~~~~iG~GiL~LP~af~~~--G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~ 82 (443)
|+.+.+.+++ |+.+...|.++ +.|+-++.. |.- .+...++.++++.-......+...+. |++| +...| .
T Consensus 12 REvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAm-PrAG--GdYVY---I 83 (399)
T PHA02764 12 KSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKF-PLNG--GDYAY---I 83 (399)
T ss_pred eeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhC-CCCC--ceEEE---h
Confidence 4556677777 77776666654 556533333 222 22333344444444444344443333 4455 45666 8
Q ss_pred HHHhcccccchhhHHHHHHh
Q 013427 83 DMCLGKTNAWACSFFVHVGL 102 (443)
Q Consensus 83 ~~~~G~~~~~~~~i~~~~~~ 102 (443)
++++|++.+.+..+......
T Consensus 84 SRAFGP~~GFLvG~a~WLtl 103 (399)
T PHA02764 84 RTAFSSKFYTIFGISLWLTY 103 (399)
T ss_pred HHhhCccHHHHHHHHHHHHH
Confidence 89999988877666665443
No 100
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=65.07 E-value=2e+02 Score=30.90 Aligned_cols=86 Identities=19% Similarity=0.224 Sum_probs=58.7
Q ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhcccccchhhHHHHHHhhhhhHH
Q 013427 29 LAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIA 108 (443)
Q Consensus 29 LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~ 108 (443)
|-|..-.+|...|.++.++|+..+..|..-+...+..-.-..| -+|- +-.+.+|+-.+-.+.++.++..-....-
T Consensus 137 LtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaG----GsYf-mISRsLGPEFGgAVGlcFYLgtT~AaaM 211 (1075)
T KOG2082|consen 137 LTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAG----GSYF-MISRSLGPEFGGAVGLCFYLGTTVAAAM 211 (1075)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC----CeeE-EEecccCccccceeeehhhhhhHHHHHH
Confidence 6788888999999999999999888888777665432111122 1333 3456778877777777777777666777
Q ss_pred HHHHHHhhHHH
Q 013427 109 YTVTSAISMRA 119 (443)
Q Consensus 109 y~i~~~~~l~~ 119 (443)
|++..-+.+-.
T Consensus 212 YIlGaVEi~L~ 222 (1075)
T KOG2082|consen 212 YILGAVEIFLT 222 (1075)
T ss_pred HHHhHHHHHHH
Confidence 77766555544
No 101
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=57.78 E-value=2.1e+02 Score=28.68 Aligned_cols=107 Identities=16% Similarity=0.187 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhhhhhhh-hhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhc
Q 013427 9 TLWTAVAHIITGVIGSG-VLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLG 87 (443)
Q Consensus 9 s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G 87 (443)
|-..-+....++.+|.| +--.||-..+.|-..-++..++.-++.-+ -.++.|-.-.+ +.+++...+|+.+.. +
T Consensus 10 SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~Gi-Plli~Ef~iGr--~~~~~~~~a~~~l~~---~ 83 (439)
T COG0733 10 SRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGI-PLLLAEFAIGR--RGRKNAVGAFRKLAP---K 83 (439)
T ss_pred hHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhH-HHHHHHHHhhh--hcCCChhHHHHHhcc---C
Confidence 33445556678888877 45689988877755333333332222222 22344433111 112214456666665 3
Q ss_pred ccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHh
Q 013427 88 KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQK 122 (443)
Q Consensus 88 ~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~ 122 (443)
|++++ +........+..+.-|.+..+=.+..+..
T Consensus 84 ~~~~~-~G~~gv~~~~~i~sfYsvI~GWil~Y~~~ 117 (439)
T COG0733 84 KKWEW-IGWFGVLGGFLILSFYSVIGGWILSYLVK 117 (439)
T ss_pred ccchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 33334455555555666665555554443
No 102
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=53.33 E-value=1.6e+02 Score=29.72 Aligned_cols=80 Identities=10% Similarity=0.022 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCC---hHHHHHHhhhhhhhhhHhhhhhHHHHHHhcC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013427 363 VSVTAIAMSFPY---FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNI-EAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 438 (443)
Q Consensus 363 ~~~~~ia~~vp~---~~~v~~l~Gs~~~~~l~~ilP~l~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~~~ 438 (443)
....+.....|. ...++++.|.-.-+.+.=.+=+++-+..+|+ ++++...+....+--.|.++.+.|--++..+++
T Consensus 240 ~~~t~~~~~~~~~~~~~~~~~flG~p~iALlig~l~a~~~l~~~~~~~~~~~~~~~~~al~~~g~IlLItgaGGafg~vl 319 (441)
T PF02447_consen 240 LLGTVADLFLPKGSPLRSILSFLGDPNIALLIGVLIALYLLGRRRGMSREEVMKWLEKALKPAGMILLITGAGGAFGQVL 319 (441)
T ss_pred HHHHHHHhccCCcchHHHHHHHhCCcHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 334444455553 5678888887655444444433333332222 222222334556666788899999999988888
Q ss_pred Hhhh
Q 013427 439 SAKL 442 (443)
Q Consensus 439 ~~~~ 442 (443)
+|.+
T Consensus 320 ~~sg 323 (441)
T PF02447_consen 320 KDSG 323 (441)
T ss_pred HhCC
Confidence 7753
No 103
>PRK09950 putative transporter; Provisional
Probab=50.20 E-value=3.1e+02 Score=28.27 Aligned_cols=151 Identities=8% Similarity=0.058 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhH
Q 013427 38 WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISM 117 (443)
Q Consensus 38 ~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l 117 (443)
.++...+.+..+++.-++.++..+-.....+.. ...+.++.....+..-. ..-.........+..+++...|+.
T Consensus 350 ~~psl~~~~wf~ifGg~ai~l~~~g~~~~~~~~---~~~~~~~a~~~~l~~lP---~~~i~~~l~~vl~~if~vTs~DS~ 423 (506)
T PRK09950 350 LGSSVGCWFFFGVLESYAIHQFINGVINVPQIL---NTLGGETAVQQLLSSLP---AGKLFLAAYLGIMIIFLASHMDAV 423 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchhHHHHH---HccCcchHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHhhhHH
Q ss_pred HHHHhhhccc-cCCCCccccccchhHHHHHHHHHHHhhcCCC-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Q 013427 118 RAIQKSNCYH-REGHEAACEYSDTYYMLIFGAVQLILSQAPD-FHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVM 195 (443)
Q Consensus 118 ~~l~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~-l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 195 (443)
...+...+.+ .++++++....|-.|.+....+..-+..... ++.++..+.++.+ -+.++.+.+..++.+..++.+.+
T Consensus 424 s~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~Ll~~gG~l~~lQ~~~ii~al-P~~~i~~l~~~s~~k~l~~d~~~ 502 (506)
T PRK09950 424 AYTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSILFTGASLDTMKTTVVLTAL-PFLVILLIKVYGFIRWLKQDYAD 502 (506)
T ss_pred HHHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhc
No 104
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=48.23 E-value=1.8e+02 Score=29.42 Aligned_cols=116 Identities=12% Similarity=0.003 Sum_probs=58.5
Q ss_pred CcccchHHHHHHHHHhhhhhhhhhhHH----HHHH-h--cCcc---------HHHHHHHHHHHHHHHHHHHHHH---ccc
Q 013427 4 DDFEGTLWTAVAHIITGVIGSGVLSLA----WSMA-Q--LGWI---------AGPLAMVIFASVTLFATFLLCD---CHR 64 (443)
Q Consensus 4 ~~~~~s~~~a~~~l~~~~iG~GiL~LP----~af~-~--~G~~---------~g~i~l~~~~~~~~~s~~~l~~---~~~ 64 (443)
++.+-|.++-...++.+-+|+|++.-. .... + .|.- .+.....+=+.+..++.+.+.- ++.
T Consensus 33 ~kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~ 112 (453)
T TIGR00842 33 EKPEFSTLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAYF 112 (453)
T ss_pred CCCCCcchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 344556778889999999999998763 2222 1 1211 1222222222333344443333 222
Q ss_pred CCCCCCCCCCcccHHHHHHHHhccc----ccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhh
Q 013427 65 GPDPEYGPGRNRSYLEAVDMCLGKT----NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKS 123 (443)
Q Consensus 65 ~~~~~~g~~~~~~y~~l~~~~~G~~----~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~ 123 (443)
+.+++ +..+.++..+-.+|++ .+.++|+..++...+....-+-.....+..-++.
T Consensus 113 ~~rk~----~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~atsLGlg~~qi~~gl~~ 171 (453)
T TIGR00842 113 HVRKG----LPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATSLGLGAPQINAGLSA 171 (453)
T ss_pred heecC----CCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22111 3456777778778764 2345555555555554444444444444444443
No 105
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=43.97 E-value=1.1e+02 Score=28.07 Aligned_cols=36 Identities=3% Similarity=0.166 Sum_probs=24.8
Q ss_pred hhcCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhccccC
Q 013427 235 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 275 (443)
Q Consensus 235 ~~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~ 275 (443)
+.+++| ++++.+.+...+..++|...-..+...+++
T Consensus 19 ~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~~ 54 (251)
T PRK04949 19 KLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLDA 54 (251)
T ss_pred HHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 899999999999888887664444444443
No 106
>PRK09928 choline transport protein BetT; Provisional
Probab=42.93 E-value=2.6e+02 Score=29.85 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=53.8
Q ss_pred hhhhHHHHHHHHhhHHHHHhhhccccC-CCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHH
Q 013427 103 YGTAIAYTVTSAISMRAIQKSNCYHRE-GHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGF 181 (443)
Q Consensus 103 ~g~~~~y~i~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~ 181 (443)
...+..+++..+|+....+..++.... ++++++.+.+-.|.++.+++.+.+.....++.++..+.++.+=. .++.+.+
T Consensus 416 ~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~alPf-~~I~ll~ 494 (679)
T PRK09928 416 TITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPF-SFVIFFV 494 (679)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHH
Confidence 334456888889998888877665422 22345556677888777777766777777888887776664322 2223333
Q ss_pred HHHHHHHh
Q 013427 182 GLGVAKVI 189 (443)
Q Consensus 182 ~~~~~~~~ 189 (443)
..++.+..
T Consensus 495 ~~sl~k~l 502 (679)
T PRK09928 495 MAGLYKSL 502 (679)
T ss_pred HHHHHHHH
Confidence 44555544
No 107
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=42.36 E-value=34 Score=22.13 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=23.8
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhccccCcc
Q 013427 247 MKKASTMSIITTTIFYLFCGGFGYAAFGDNT 277 (443)
Q Consensus 247 ~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~ 277 (443)
+..+..+++.+..++....|..-|.+||...
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4456777788888888888888888898754
No 108
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=42.20 E-value=3.8e+02 Score=27.13 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=43.0
Q ss_pred hhhhhHHHHHHHHhhHHHHHhhhccc-cCCCCccccccchhHHHHHHHHHHHhhcCCC-CCchhhHHHHHH
Q 013427 102 LYGTAIAYTVTSAISMRAIQKSNCYH-REGHEAACEYSDTYYMLIFGAVQLILSQAPD-FHNIQSLSVIAA 170 (443)
Q Consensus 102 ~~g~~~~y~i~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~-l~~l~~~s~~~~ 170 (443)
....+..+++...|+....+...+.. .+.+++++...+-.|.++...+...+..... ++.++..+.++.
T Consensus 362 ~~il~~if~vTs~DS~s~vla~~~s~~g~~~~ep~~~~ri~W~v~ig~~a~~ll~~gG~l~~lQ~~~ii~a 432 (453)
T TIGR00842 362 ALIVIIIFFITSADSGALVLANTSSRGGQLGEEPPKWVRVFWAVAIGLIALVLLFSGGSLAALQTTAIIAA 432 (453)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34445568888888888888765432 1222235556677787776666655656655 777777666553
No 109
>PRK10034 fructuronate transporter; Provisional
Probab=42.00 E-value=2.8e+02 Score=28.07 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=41.4
Q ss_pred hHHHHHHhhhhhhhhhHhhhhhHHHHHHhcC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013427 375 FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNI-EAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKL 442 (443)
Q Consensus 375 ~~~v~~l~Gs~~~~~l~~ilP~l~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~~~~~~~ 442 (443)
+..++++.|.-.-..+.=.+=+++-+..+|. ++++........+-..|.++.+.|.-++..+++++.+
T Consensus 255 ~~~~~~fiG~p~iALlig~l~a~~~lg~~~~~~~~~~~~~~~~~l~~~g~IlLitgaGGafg~vl~~sg 323 (447)
T PRK10034 255 AWEVVNFIGSSPIAMFIAMVVAFVLFGTARGHDMQWVMNAFESAVKSIAMVILIIGAGGVLKQTIIDTG 323 (447)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhhHhhheecChHHHHHHHHhCC
Confidence 4567788887665555444434433312222 2222223345666677899999999999998888753
No 110
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=40.80 E-value=2.1e+02 Score=29.43 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=54.1
Q ss_pred HhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHH
Q 013427 101 GLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIG 180 (443)
Q Consensus 101 ~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~ 180 (443)
.....+..+.+...|+..-+++...... .++++..-+..|.++..++...+.+...++.++..+.+.. +-+.++.++
T Consensus 410 ~~~~~i~~FfiTsaDS~s~vl~~~ss~~--~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~aLqt~~ii~a-lPF~~vll~ 486 (537)
T COG1292 410 LALLVIAIFFVTSADSGSYVLAMISSRG--GEDPPRWVRVFWGVLIGLIAAVLLLIGGLEALQTAAIITA-LPFSLVLLV 486 (537)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHhccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-ccHHHHHHH
Confidence 3344556778888888888887654332 3344456667777777776666666777888887776553 233333444
Q ss_pred HHHHHHHHhh
Q 013427 181 FGLGVAKVIG 190 (443)
Q Consensus 181 ~~~~~~~~~~ 190 (443)
+..++++..+
T Consensus 487 ~~~sl~k~l~ 496 (537)
T COG1292 487 MMFSLIKDLK 496 (537)
T ss_pred HHHHHHHHHH
Confidence 4556665554
No 111
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=40.75 E-value=4.3e+02 Score=27.23 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHhhHHHHHhhhcccc-CCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHHHHH
Q 013427 104 GTAIAYTVTSAISMRAIQKSNCYHR-EGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAA 170 (443)
Q Consensus 104 g~~~~y~i~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 170 (443)
..+..+++...|+....+...+.+. +++++++...+-.|.++...+.+.+.+...++.++..+.++.
T Consensus 413 il~~if~vTsaDS~t~vla~~ts~g~~~~~~p~~~~ri~W~v~ig~ia~~Ll~~GGl~~lQt~sii~a 480 (504)
T PRK03356 413 ILCFIATVTLINACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGG 480 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3445678888888888877665542 223345556677787777766666666666777777666553
No 112
>TIGR00909 2A0306 amino acid transporter.
Probab=39.42 E-value=3.6e+02 Score=26.68 Aligned_cols=47 Identities=4% Similarity=-0.180 Sum_probs=40.1
Q ss_pred cHHHHHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhh
Q 013427 77 SYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKS 123 (443)
Q Consensus 77 ~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~ 123 (443)
...+..++..|+++..+..+...+..+++..+.+...+..+..+-++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45677788888888899999999999999999999999988887644
No 113
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=39.01 E-value=3.3e+02 Score=27.83 Aligned_cols=145 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhH
Q 013427 38 WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISM 117 (443)
Q Consensus 38 ~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l 117 (443)
.++...+++-.+++.-++.++-.+-.... ....-.+..+..+.-.-..=..-.........+..+++...|+.
T Consensus 341 ~~psl~~~~wf~ifGg~al~~~~~g~~~~-------~~~~~~g~~~a~~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS~ 413 (485)
T PF02028_consen 341 LVPSLFCFLWFSIFGGYALYLQLSGAGDL-------AAANEQGPEAALFAFLEQLPLSKILSILFLILIFIFFVTSADSA 413 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTSS-H-------HHHHHH-HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHCchHHhhHhhhhhhH-------HHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHH
Q ss_pred HHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013427 118 RAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGN 191 (443)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~ 191 (443)
...+...+... +++++...+-.|.++..++.+.+.....++.++.++.++.+=....+++.....+....++
T Consensus 414 ~~~la~~s~~~--~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~~d 485 (485)
T PF02028_consen 414 TYVLAMLSSKG--DEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALKED 485 (485)
T ss_dssp HHHHHHHHCTT--TSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCC--CCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 114
>CHL00020 psbN photosystem II protein N
Probab=38.01 E-value=33 Score=21.83 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhccccCcc
Q 013427 249 KASTMSIITTTIFYLFCGGFGYAAFGDNT 277 (443)
Q Consensus 249 ~~~~~s~~~~~~~y~~~g~~gy~~fg~~~ 277 (443)
.+..+++.+..++....|..-|.+||...
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 35566777777777777888888888754
No 115
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=36.61 E-value=2.5e+02 Score=25.51 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=61.7
Q ss_pred HHHHhhcccceehHhhhhhcCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCchHHHHHH
Q 013427 218 GDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLA 297 (443)
Q Consensus 218 ~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~ 297 (443)
-++-|-| -++...-+||.-|+ ++|+.+|.+....=++.+...++|+..-..+-+... +-+-++ -+.|+...+
T Consensus 62 MviGfI~-l~GeAiL~YR~~r~---~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~--i~NfyS--LHSWlGl~~ 133 (245)
T KOG1619|consen 62 MVIGFIY-LQGEAILIYRVFRY---TSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG--IANFYS--LHSWLGLCV 133 (245)
T ss_pred HHHHHHH-hccceeeeeehhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--ccceee--HHHHHHHHH
Confidence 3333444 23444445555443 248999999999888888888888877777655544 322233 369999999
Q ss_pred HHHHHHHhHhhccccccc
Q 013427 298 NAFIVIHLVGGYQVYSQP 315 (443)
Q Consensus 298 ~~~~~i~~~~sypl~~~p 315 (443)
-..+..|-..++-.+.+|
T Consensus 134 v~ly~~Q~v~GF~tfl~p 151 (245)
T KOG1619|consen 134 VILYSLQWVFGFFTFLFP 151 (245)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999998888666655
No 116
>PRK09928 choline transport protein BetT; Provisional
Probab=36.20 E-value=2.7e+02 Score=29.80 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=20.3
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSL 29 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~L 29 (443)
+.+-+.++-+..++.+-+|+|++.-
T Consensus 90 kPefS~~sW~aMLFaAGmGigLmfw 114 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDLMFF 114 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhheee
Confidence 4455677888999999999999876
No 117
>PLN02351 cytochromes b561 family protein
Probab=36.19 E-value=3e+02 Score=25.14 Aligned_cols=67 Identities=10% Similarity=0.144 Sum_probs=45.3
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCchHHHHHHHHHHHHHhHhhccccccch
Q 013427 245 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 316 (443)
Q Consensus 245 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~ 316 (443)
++.+|.+....-...+....+|+.. .|-++ +....|+-. -+.|+....-..+.+|-+.++.....|.
T Consensus 80 ~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~--~~~i~nlyS-LHSWlGl~tv~Lf~lQwv~Gf~~F~~P~ 146 (242)
T PLN02351 80 RKTKKSVHLWLQGLALASGVFGIWT--KFHGQ--DGIVANFYS-LHSWMGLICVSLFGAQWLTGFMSFWHRG 146 (242)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH--HHhcc--cCCccchhH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4557888888877777777777766 44332 223223221 3689999998999999988886655553
No 118
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=35.72 E-value=5.1e+02 Score=26.69 Aligned_cols=30 Identities=13% Similarity=0.136 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhhhhhhh-hhhHHHHHHhcCc
Q 013427 9 TLWTAVAHIITGVIGSG-VLSLAWSMAQLGW 38 (443)
Q Consensus 9 s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~ 38 (443)
+-.+-....++..+|.| +.-.||-..+-|-
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG 36 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGG 36 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTT
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 34566777889999998 7789999776664
No 119
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=35.43 E-value=38 Score=21.63 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhccccCcc
Q 013427 250 ASTMSIITTTIFYLFCGGFGYAAFGDNT 277 (443)
Q Consensus 250 ~~~~s~~~~~~~y~~~g~~gy~~fg~~~ 277 (443)
+...++.+..++-.+.|..-|.+||...
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 4556677777777778888888998644
No 120
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=34.79 E-value=74 Score=26.51 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=47.3
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCchHHHHHHHHHHHHHhHhhccccccch
Q 013427 245 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 316 (443)
Q Consensus 245 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~ 316 (443)
|+.+|.+....-....+...+|+..-..+-|+ ...-+-++ -+.|+..+.-+.+.++.+.++.....|-
T Consensus 37 k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~--~~~~~~~S--lHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 37 REVQKAVHLTLHLVALVLGIVGIYAAFKFHNE--VGIPNLYS--LHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCcccccc--HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67778888888888888888888444444333 33322222 3689999999999999998876666664
No 121
>PLN02680 carbon-monoxide oxygenase
Probab=34.61 E-value=70 Score=28.98 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=48.8
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCchHHHHHHHHHHHHHhHhhccccccc
Q 013427 245 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 315 (443)
Q Consensus 245 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p 315 (443)
|+.+|.+....-...+....+|+.. .|..+.+..+-+-++ -+.|+....-+++.+|.+.++..+.+|
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~a--vfk~hn~~~~~nfyS--lHSWlGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWA--ALKFHNEKGIDNFYS--LHSWLGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH--HHHhccccCcccccc--HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 7788888888888888888888855 444443334433333 468999999999999999888666666
No 122
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=31.86 E-value=1.1e+02 Score=25.76 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=49.7
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCchHHHHHHHHHHHHHhHhhccccccch
Q 013427 245 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 316 (443)
Q Consensus 245 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~ 316 (443)
|+.+|.+....-....+-..+|+..-..+-++. .+-+-++ -+.|+..+.-+++.+|.+.++....+|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~~~fyS--lHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NIPNMYS--LHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCcccc--HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 677888888888888777788876555554433 3322223 3689999999999999999998888885
No 123
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=30.46 E-value=1.2e+02 Score=25.21 Aligned_cols=68 Identities=9% Similarity=0.091 Sum_probs=48.3
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCchHHHHHHHHHHHHHhHhhccccccch
Q 013427 245 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 316 (443)
Q Consensus 245 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~ 316 (443)
|+..|.+....-....+-..+|+..-..+-++. .+-+-++ -+.|+..+.-+.+..+.+.++....+|-
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~~~hf~S--lHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFDYHQAN--GYPDMYS--LHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCcccc--HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 566677888888888888888886655444432 3222222 4689999999999999999988877773
No 124
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=29.38 E-value=1.1e+02 Score=27.69 Aligned_cols=65 Identities=11% Similarity=0.242 Sum_probs=36.1
Q ss_pred HHHHHHHhCCChHHHHHH---------hhhhhhhhhHhhhhhHHHHHHhcCC-----chhhhHHHHHHHHHHHHHHHHHH
Q 013427 364 SVTAIAMSFPYFNQVLGV---------IGGVIFWPLTIYFPVEMYFKQMNIE-----AWTRKWVMLRVFSYVCFIVSTFG 429 (443)
Q Consensus 364 ~~~~ia~~vp~~~~v~~l---------~Gs~~~~~l~~ilP~l~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~v~g 429 (443)
.++++|..++.++-++.. -||++|.-+.++= |..+-|.. .....+|..|+++++|.++.+-+
T Consensus 165 ~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~lr~ 240 (262)
T KOG4812|consen 165 WAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFLRG 240 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHHHHHH
Confidence 345555555555544433 4778777776664 32221211 11112446777778888888877
Q ss_pred HHH
Q 013427 430 LVG 432 (443)
Q Consensus 430 ~~~ 432 (443)
++.
T Consensus 241 ~i~ 243 (262)
T KOG4812|consen 241 FIN 243 (262)
T ss_pred HHh
Confidence 764
No 125
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=28.52 E-value=95 Score=26.91 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=49.2
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCchHHHHHHHHHHHHHhHhhccccccc
Q 013427 245 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 315 (443)
Q Consensus 245 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p 315 (443)
|+.+|.+....-...++...+|+.....+-|+ ..+-+.++ -+.|+....-..+.+|-+.++.....|
T Consensus 67 k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~--~~~~nlyS--lHSWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 67 KLPWKLLHAGLLLLAFILTVIGLCAVFNFHNV--HHTANLYS--LHSWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccchhh--HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67778888888888888888888655555443 34433333 368999999899999999888766666
No 126
>PLN02810 carbon-monoxide oxygenase
Probab=27.96 E-value=4.6e+02 Score=23.78 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=49.1
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCchHHHHHHHHHHHHHhHhhccccccch
Q 013427 245 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 316 (443)
Q Consensus 245 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~ 316 (443)
|+.+|.+....=...++...+|+.....+-| +..+-+-++ -+.|+....-..+.+|-+.++-...+|-
T Consensus 76 k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn--~~~i~nlyS--LHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~ 143 (231)
T PLN02810 76 KEVKKLIHLVLHAIALILGIFGICAAFKNHN--ESGIANLYS--LHSWLGIGIISLYGIQWIYGFIVFFFPG 143 (231)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCceee--HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6778888888888888888888865555544 334433333 3689999998899999988886666663
No 127
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=27.78 E-value=1.4e+02 Score=24.06 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhcCccH-HHHHHHHHH-HHHHHHHHHHHHcc
Q 013427 9 TLWTAVAHIITGVIGSGVLSLAWSMAQLGWIA-GPLAMVIFA-SVTLFATFLLCDCH 63 (443)
Q Consensus 9 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~-g~i~l~~~~-~~~~~s~~~l~~~~ 63 (443)
+.+.-....+++.+=.|-+++|..++++|++. |...+...+ .+...+..+.-++.
T Consensus 64 ~~~idlA~FlTg~~vvs~falPiVl~ha~lI~~gAc~l~~tg~~iIF~~ii~~f~~f 120 (131)
T KOG2174|consen 64 DACIDLAKFLTGAIVVSAFALPIVLAHAGLIGWGACALVLTGNSIIFLVIILFFLIF 120 (131)
T ss_pred cHHHHHHHHHhcchhhhhhhhHHHHHHhhHhhhhhhhhhhcCCchhHHHHHHHHHHH
Confidence 35566677777777788899999999999873 333444444 34444444444443
No 128
>PRK12768 CysZ-like protein; Reviewed
Probab=27.62 E-value=3.1e+02 Score=25.05 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=19.8
Q ss_pred hhhcCCCCccccchhhhhHHHHHHHHHHHHhh
Q 013427 234 QDTLKSPPPANQTMKKASTMSIITTTIFYLFC 265 (443)
Q Consensus 234 ~~~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~ 265 (443)
.+++.|| ++++++..+...+..++...
T Consensus 9 ~~ql~~~-----~~r~vl~~~~~lt~~l~~~~ 35 (240)
T PRK12768 9 LARLLSP-----PMRSVFWKVLGLTLLLLVVL 35 (240)
T ss_pred HHHhCCH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3556664 78888888888877777664
No 129
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=26.73 E-value=5.1e+02 Score=25.93 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=36.2
Q ss_pred HHHHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHH
Q 013427 79 LEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQ 121 (443)
Q Consensus 79 ~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~ 121 (443)
.+.-+..+|.++.+++.+++.+..|.+.+++....-+.+..+.
T Consensus 296 ~~Af~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 296 QAAFSTVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444456778899999999999999999999999988888876
No 130
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=26.73 E-value=3.9e+02 Score=24.44 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhhhhhcc
Q 013427 254 SIITTTIFYLFCGGFGYAA 272 (443)
Q Consensus 254 s~~~~~~~y~~~g~~gy~~ 272 (443)
...+...+|+..++.+...
T Consensus 200 n~~ll~~~~~~l~i~s~~t 218 (248)
T PF11368_consen 200 NQYLLPILYILLFIYSLLT 218 (248)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 4455567777777766644
No 131
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=23.54 E-value=6.7e+02 Score=25.28 Aligned_cols=68 Identities=10% Similarity=0.092 Sum_probs=42.3
Q ss_pred hHHHHHHhhhhhhhhhHhhhhhHHHHHHhcC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013427 375 FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNI-EAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKL 442 (443)
Q Consensus 375 ~~~v~~l~Gs~~~~~l~~ilP~l~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~~~~~~~ 442 (443)
+..++++.|.-.-..+.=.+=+.+-+..+|. ++++........+--.|.++.+.|.-++..++++|.+
T Consensus 252 ~~~~l~f~G~p~iALlig~l~a~~~lg~~~~~~~~~~~~~~~~al~~~g~IlLI~gaGGafg~VL~~sg 320 (438)
T PRK14984 252 FLPVAEFLGDPVMATLIAVLIAMFTFGLNRGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLVDSG 320 (438)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHhCC
Confidence 5578888887665555544444433322222 2222233345666677899999999999999888753
No 132
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=23.39 E-value=7.8e+02 Score=24.86 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhCC---ChHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCC-chhhhHHHHHHHHHHHHHHHHHHHH
Q 013427 356 CFRTVYVVSVTAIAMSFP---YFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIE-AWTRKWVMLRVFSYVCFIVSTFGLV 431 (443)
Q Consensus 356 ~~~~~~~~~~~~ia~~vp---~~~~v~~l~Gs~~~~~l~~ilP~l~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~v~g~~ 431 (443)
.+....++.........+ .....+++.|+.-...+.-++=+++-+..+|++ +++........+--.+.++.+.|.-
T Consensus 231 ~vpi~lm~l~ti~~~~~~~~~~~~~~~~flg~~~~al~i~ll~ai~~l~~~~~~~~~~~~~~~~~~i~~~~~ilLitgag 310 (442)
T COG2610 231 LVPILLMALKTIASLLLPKGSPALEVLEFLGNPVIALLIALLVAIYTLGMGRGRSKNTLMESLESALKPIAMILLITGAG 310 (442)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHhcChHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 334444444444444443 344588888887766665555444444433322 2222222344444456666677766
Q ss_pred HHHHHHHHh
Q 013427 432 GSIQGIISA 440 (443)
Q Consensus 432 ~si~~~~~~ 440 (443)
+...+.+.|
T Consensus 311 gafg~Vl~~ 319 (442)
T COG2610 311 GAFGQVLAD 319 (442)
T ss_pred HhhhhHHHh
Confidence 665555554
No 133
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.51 E-value=1.7e+02 Score=26.27 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=48.6
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhccccCcccccccccccccCchHHHHHHHHHHHHHhHhhccccccc
Q 013427 245 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 315 (443)
Q Consensus 245 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p 315 (443)
|+..|.+....-....+...+|+..-..+-|+.++.+-+-++ -+.|+....-+.+.+|.+.++....+|
T Consensus 54 k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfyS--lHSwlGl~t~~L~~lQ~~~Gf~~fl~P 122 (214)
T cd08764 54 KKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYS--LHSWLGLTAVILFSLQWVGGFVSFLFP 122 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556687888888888888888865544444444334433333 478999999999999999998666666
No 134
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=21.40 E-value=4.4e+02 Score=21.20 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHHcc
Q 013427 11 WTAVAHIITGVIGSGVLSLAWSMAQLGWI-AGPLAMVIFASVTLFATFLLCDCH 63 (443)
Q Consensus 11 ~~a~~~l~~~~iG~GiL~LP~af~~~G~~-~g~i~l~~~~~~~~~s~~~l~~~~ 63 (443)
++-....+++.+=.+-++||..++++|.+ .|...+.+.+-+..|...+.....
T Consensus 60 ~~d~~~FlT~~~vvSg~aLP~VL~H~~~I~~~A~~l~l~g~~ii~~ti~~f~~~ 113 (120)
T PF04133_consen 60 CQDFGKFLTGFLVVSGFALPIVLAHAGIIQWGACGLSLAGGVIIYATIIGFFWF 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 56677777777778889999999999977 556666666666666666554443
No 135
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=21.29 E-value=9.3e+02 Score=24.95 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=19.7
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSL 29 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~L 29 (443)
+.+-+.++-.+.++.+-+|.|++..
T Consensus 85 ~PEfs~~SW~aMLFaAGmGigl~fw 109 (537)
T COG1292 85 KPEFSTLSWLAMLFAAGMGIGLLFW 109 (537)
T ss_pred CCCcchhHHHHHHHHcccCceeeEe
Confidence 3344677888999999999999865
No 136
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=20.90 E-value=1.1e+02 Score=26.82 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=21.7
Q ss_pred HHHHhhhhhhhhhHhhhhhHHHHHHhcC
Q 013427 378 VLGVIGGVIFWPLTIYFPVEMYFKQMNI 405 (443)
Q Consensus 378 v~~l~Gs~~~~~l~~ilP~l~~~~~~~~ 405 (443)
-.-..|++.++-+.-++|+...+..+++
T Consensus 46 ~vw~f~Gi~GgGlmvl~pa~~~l~~~~~ 73 (195)
T PF05805_consen 46 EVWYFGGIIGGGLMVLLPAIVFLAAGKR 73 (195)
T ss_pred hheecCccccchHHHHHHHHHHHHhCCC
Confidence 4445677888888888999998887665
Done!