Query 013427
Match_columns 443
No_of_seqs 125 out of 1237
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 10:22:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.7 3.5E-15 1.2E-19 149.0 25.8 366 4-407 6-380 (445)
2 3gia_A Uncharacterized protein 99.6 7.3E-13 2.5E-17 132.1 32.0 358 1-406 1-369 (444)
3 4djk_A Probable glutamate/gamm 99.3 1.4E-09 4.8E-14 110.3 26.8 247 5-276 10-263 (511)
4 2jln_A MHP1; hydantoin, transp 98.4 0.00012 3.9E-09 73.6 24.9 153 4-175 23-177 (501)
5 3dh4_A Sodium/glucose cotransp 97.9 0.0067 2.3E-07 61.2 27.5 150 5-176 19-170 (530)
6 2xq2_A Sodium/glucose cotransp 97.7 0.017 5.8E-07 59.1 26.6 149 6-176 49-199 (593)
7 2a65_A Leutaa, Na(+):neurotran 76.5 62 0.0021 31.9 33.3 37 2-38 1-40 (519)
8 4ain_A Glycine betaine transpo 50.7 1.4E+02 0.0049 29.4 11.6 105 4-109 92-214 (539)
9 2wsw_A BCCT family betaine/car 39.1 1E+02 0.0034 30.3 8.5 98 97-195 411-509 (509)
10 3gia_A Uncharacterized protein 23.2 3.6E+02 0.012 25.2 9.6 48 76-123 258-305 (444)
11 4ain_A Glycine betaine transpo 20.8 6.1E+02 0.021 25.0 14.0 85 103-190 418-505 (539)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.70 E-value=3.5e-15 Score=149.04 Aligned_cols=366 Identities=10% Similarity=0.034 Sum_probs=204.2
Q ss_pred CcccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 4 DDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 4 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
++|+-+.++..+..+++++|+|++.+|...++.|. .+++..++.++..........|...+. |+.| ...+..+
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~-p~~G-----g~y~~~~ 78 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLD-PSPG-----GSYAYAR 78 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCTT-----THHHHHH
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccC-CCCC-----CchhhHH
Confidence 35667899999999999999999999999888885 477788888888888888888876543 2222 5566789
Q ss_pred HHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchh
Q 013427 84 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 163 (443)
Q Consensus 84 ~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 163 (443)
+.+||+.+++......+.......++....++.+..+.+.. . . ......+.+++.++. -....+..|...
T Consensus 79 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~--~~~~~~~~~~~~~~~-~~in~~g~~~~~ 148 (445)
T 3l1l_A 79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----K--D--PWVLTITCVVVLWIF-VLLNIVGPKMIT 148 (445)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-----G--S--HHHHHHHHHHHHHHH-HHHHHHCHHHHH
T ss_pred hHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-----c--c--cHHHHHHHHHHHHHH-HHHHHhchHHHH
Confidence 99999999999988888877777777777777665433210 0 0 011111111111111 122223344444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhcCCCCcc
Q 013427 164 SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA 243 (443)
Q Consensus 164 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~ 243 (443)
.++.+.....+. ..+...+......++... ..++. .+......++..++....|+|.+........+|+|||
T Consensus 149 ~~~~~~~~~~i~---~~~~~~i~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p--- 220 (445)
T 3l1l_A 149 RVQAVATVLALI---PIVGIAVFGWFWFRGETY-MAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP--- 220 (445)
T ss_dssp HHHHHHHHHHHH---HHHHHHHTTSTTCCCCCC-CCC------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH---
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHhChhhc-ccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---
Confidence 444433333322 211122111111111100 01111 1111224567788999999999999999999999998
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhhhhccccCccc----ccccccccccCchHHHHHHHHHHHHHhHhhccccccchHHH
Q 013427 244 NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP----GNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH 319 (443)
Q Consensus 244 ~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ 319 (443)
+|+.+|++..+..++.++|....+......+.+.. +....-+.....++...+..+...+..+.+.--......+.
T Consensus 221 ~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 300 (445)
T 3l1l_A 221 KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQT 300 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999887766555543221 11111110001234445555555666555543333333333
Q ss_pred HHHHHHH-hcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhC----CChHHHHHHhhhhhhhhhHhhh
Q 013427 320 FEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSF----PYFNQVLGVIGGVIFWPLTIYF 394 (443)
Q Consensus 320 ~~~~~~~-~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~v----p~~~~v~~l~Gs~~~~~l~~il 394 (443)
+..+-.. ..|+ +..+.++.+ .+.+-.+....+.....+.... ..++.+.++.+ .+..+.|.+
T Consensus 301 ~~~~a~dg~lP~--~~~~~~~~~---------~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~ 367 (445)
T 3l1l_A 301 AKAAADDGLFPP--IFARVNKAG---------TPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLY 367 (445)
T ss_dssp HHHHHHTTSSCG--GGGCCCTTC---------CCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHhCCCCcH--HHHhcCCCC---------CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3333222 1231 222211111 2333333322222221211112 23566666655 345788999
Q ss_pred hhHHHHHHhcCCc
Q 013427 395 PVEMYFKQMNIEA 407 (443)
Q Consensus 395 P~l~~~~~~~~~~ 407 (443)
+.+.+++.+++++
T Consensus 368 ~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 368 TCAALLLLGHGHF 380 (445)
T ss_dssp HHHHHHHHHSSSS
T ss_pred HHHHHHHHhhcCc
Confidence 9998888766544
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.62 E-value=7.3e-13 Score=132.12 Aligned_cols=358 Identities=9% Similarity=0.037 Sum_probs=199.4
Q ss_pred CCCCcccchHHHHHHHHHhhhhhhhhhhHHHH-HHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHH
Q 013427 1 MMSDDFEGTLWTAVAHIITGVIGSGVLSLAWS-MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYL 79 (443)
Q Consensus 1 ~m~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~ 79 (443)
|+.++|+-+.++..+..+++++|+|++..|.. .+++|- ..++..++.+++.......+.|...+.. +.| ...
T Consensus 1 m~~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P-~~G-----g~y 73 (444)
T 3gia_A 1 MELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIV-SNA-----GPI 73 (444)
T ss_dssp --CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCC-CTT-----THH
T ss_pred CCccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCC-----cHH
Confidence 45567888999999999999999999998754 455565 6788888888888888888888876542 222 456
Q ss_pred HHHHHHhcccc-cchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHH-H--HHHHHHHHhhc
Q 013427 80 EAVDMCLGKTN-AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYM-L--IFGAVQLILSQ 155 (443)
Q Consensus 80 ~l~~~~~G~~~-~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~--i~~~~~~pl~~ 155 (443)
+..++.+|++. ...+.....+........+....++.+..+++. .....+. + +....++-...
T Consensus 74 ~~~~~~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~in 140 (444)
T 3gia_A 74 AFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA-------------PINTFNIAITEIGIVAFFTALN 140 (444)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCchHHHHHHHHHHHHHHHHHH
Confidence 77999999962 222345555566666677777777777765422 0111221 1 11111122222
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceehHhhhh
Q 013427 156 APDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQD 235 (443)
Q Consensus 156 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 235 (443)
.+..|....++.+.....+...+..++..+.. .++. ++ .|+. ......+++.+++...++|.+........+
T Consensus 141 ~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~---~~~~--~~--~~~~-~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~ 212 (444)
T 3gia_A 141 FFGSKAVGRAEFFIVLVKLLILGLFIFAGLIT---IHPS--YV--IPDL-APSAVSGMIFASAIFFLSYMGFGVITNASE 212 (444)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCGG--GT--SCCC-SHHHHHHHHHHHHHGGGGGTHHHHHHTTGG
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cChh--hc--CCCC-CCcchHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33445555555444443333222222222221 1111 11 1111 123345677888889999999999999999
Q ss_pred hcCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhccccCcc-----cccccccccccCchHHHHHHHHHHHHHhHhhcc
Q 013427 236 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-----PGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQ 310 (443)
Q Consensus 236 ~m~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~-----~~~il~~~~~~~~~~~~~~~~~~~~i~~~~syp 310 (443)
|+||| +|+.+|++..+..++.++|....+......+.+. +..+.........++...+..+...+..+.+.-
T Consensus 213 e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~ 289 (444)
T 3gia_A 213 HIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMN 289 (444)
T ss_dssp GBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99998 4779999999999999999987766554443221 000100000000123333444444555544443
Q ss_pred ccccchHHHHHHHHHH-hcCCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhhhhhh
Q 013427 311 VYSQPIFAHFEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWP 389 (443)
Q Consensus 311 l~~~p~~~~~~~~~~~-~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Gs~~~~~ 389 (443)
-......+.+..+-.. ..|+ .+ .+.+ +..+.+-.+.+. +++.+++. +.+++.+.++.+. +..
T Consensus 290 ~~~~~~sR~l~a~a~dg~lP~-~f-~~~~----------~~~P~~a~~~~~--~~~~~~~~-~~~~~~l~~~~~~--~~~ 352 (444)
T 3gia_A 290 ATIYGGANVAYSLAKDGELPE-FF-ERKV----------WFKSTEGLYITS--ALGVLFAL-LFNMEGVASITSA--VFM 352 (444)
T ss_dssp HHHTTTHHHHHHHHHHSSCCS-SC-CTTS----------CCSCTHHHHHHH--HHHHHHHH-HSCHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHCCCCCH-HH-hCCC----------CCCCcHHHHHHH--HHHHHHHH-HcCHHHHHHHHHH--HHH
Confidence 3333434444433322 2342 12 2211 111222222221 12222222 2467777776553 456
Q ss_pred hHhhhhhHHHHHHhcCC
Q 013427 390 LTIYFPVEMYFKQMNIE 406 (443)
Q Consensus 390 l~~ilP~l~~~~~~~~~ 406 (443)
+.|.++.+.+++.+|++
T Consensus 353 ~~~~~~~~~~~~~r~~~ 369 (444)
T 3gia_A 353 VIYLFVILSHYILIDEV 369 (444)
T ss_dssp HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHhhhcC
Confidence 88888888888765543
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.28 E-value=1.4e-09 Score=110.29 Aligned_cols=247 Identities=13% Similarity=0.013 Sum_probs=137.5
Q ss_pred cccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCccHHHHHHHHHHHHHH-HHHHHHHHccc--CCCCCCCCCCcccHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTL-FATFLLCDCHR--GPDPEYGPGRNRSYLEA 81 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~--~~~~~~g~~~~~~y~~l 81 (443)
+|+-++++..+..++.++| +.++|. .+..|.. +++..++.+++.. .....+.|... +. | .| .....
T Consensus 10 ~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~-P-~G-----G~y~~ 78 (511)
T 4djk_A 10 AKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGW-E-EG-----GVFAW 78 (511)
T ss_dssp --CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC----------CHHHH
T ss_pred CccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccC-C-CC-----Chhhh
Confidence 4566789999999999986 567775 4566643 3444433333332 25566667665 44 3 44 44566
Q ss_pred HHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCc
Q 013427 82 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 161 (443)
Q Consensus 82 ~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 161 (443)
+++.+||+.+++......+.......++....++.+..++. .+ +-. .. .+......+++.+ ++-+.-.+..|.
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p-~~~-~~-~~~~~~~~~~~~~-~~~~in~~g~~~ 151 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK---WP-ALN-ED-PITKTIAALIILW-ALALTQFGGTKY 151 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT---CG-GGT-SC-SSHHHHHHHHHHH-HHHHHHHTCSSS
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---Cc-ccc-cC-cHHHHHHHHHHHH-HHHHHHHhChHH
Confidence 89999999988888888888777777777777666643320 11 000 00 0111111111112 222223345566
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHHHHHHhhCCccc--ccccc-CCCCchhHHHHHHHHHHHHHHhhcccceehHhhhhhc
Q 013427 162 IQSLSVIAAVMS-FAYSFIGFGLGVAKVIGNGFVM--GSFSG-VSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTL 237 (443)
Q Consensus 162 l~~~s~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 237 (443)
...++.+..... +..+++.++..+.....+++.. .+..+ .|+.++ .+...++....++|.+........+|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~G~e~~~~~a~E~ 227 (511)
T 4djk_A 152 TARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSK----VGTLVVFVAFILSYMGVEASATHVNEM 227 (511)
T ss_dssp HHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTS----TTTTTTHHHHHHHHTTGGGGTGGGSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCccc----chHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 665555543321 1111222222222221111110 01111 111111 122345667889999999999999999
Q ss_pred CCCCccccchhhhhHHHHHHHHHHHHhhhhhhhccccCc
Q 013427 238 KSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN 276 (443)
Q Consensus 238 ~~p~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~ 276 (443)
||| +|+.+|++..+..++.++|....+.-....+++
T Consensus 228 k~P---~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 228 SNP---GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp SCC---TTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred cCc---ccchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 998 488999999999999999998877666655543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.37 E-value=0.00012 Score=73.63 Aligned_cols=153 Identities=14% Similarity=0.067 Sum_probs=100.9
Q ss_pred CcccchHHHHHHHHHhhhhhhhhhhHHHHHHhcCc--cHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHH
Q 013427 4 DDFEGTLWTAVAHIITGVIGSGVLSLAWSMAQLGW--IAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 81 (443)
Q Consensus 4 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~--~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l 81 (443)
++|+.++++-+..-++..++.+.+.+...+.. |+ ..+++..++..++...-+.++.....+ ...++.++
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~-GLs~~~a~lai~lG~li~~~~~~l~~~~G~~--------~Gl~~~v~ 93 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTS-SFQVWQVIVAIAAGCTIAVILLFFTQSAAIR--------WGINFTVA 93 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHH--------HCCCHHHH
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhh--------cCCChhhh
Confidence 45767777777666777777777766655554 53 455555555555444444433333211 22469999
Q ss_pred HHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCc
Q 013427 82 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 161 (443)
Q Consensus 82 ~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 161 (443)
.+..||+++..+..+...+.++|-........++.+..+++... + ..+...+.+++.++.++..+ ..++.
T Consensus 94 ~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g--------~~~~~v~~~i~~~l~~~~~~-~G~~~ 163 (501)
T 2jln_A 94 ARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-G--------FTNLPLWIVIFGAIQVVTTF-YGITF 163 (501)
T ss_dssp TTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--------CCCHHHHHHHHHHHHHHHHT-THHHH
T ss_pred hHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C--------cchHHHHHHHHHHHHHHHHH-hCHHH
Confidence 99999999999999999999999999999999999988765321 1 01123455666666676664 44677
Q ss_pred hhhHHHHHHHHHHH
Q 013427 162 IQSLSVIAAVMSFA 175 (443)
Q Consensus 162 l~~~s~~~~~~~~~ 175 (443)
++.+..+.....+.
T Consensus 164 i~~~~~~~~p~~~i 177 (501)
T 2jln_A 164 IRWMNVFASPVLLA 177 (501)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776655443
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.93 E-value=0.0067 Score=61.24 Aligned_cols=150 Identities=12% Similarity=0.060 Sum_probs=81.3
Q ss_pred cccchHHHHHHHHHhhhhhh-hhhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHH
Q 013427 5 DFEGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 83 (443)
Q Consensus 5 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~ 83 (443)
.|+-++|-..+.+..+.+++ ..+++|-...+.|+......... ++.-......+..-.++. +..|.+|.-+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~~-------~~~T~~e~l~ 90 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEK-------GIYTIPEFVE 90 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHHT-------TCCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHHc-------CCccHHHHHH
Confidence 35556777777776666655 56778888888887543211111 110011122222222221 5679999999
Q ss_pred HHhcccccchhhHHHHHH-hhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCch
Q 013427 84 MCLGKTNAWACSFFVHVG-LYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 162 (443)
Q Consensus 84 ~~~G~~~~~~~~i~~~~~-~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 162 (443)
+-||++.+.+..+...+. .+..+.+.+...+..++.++ ..+....+++..++.........++..
T Consensus 91 ~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~--------------Gi~~~~~i~i~~~i~~~Yt~~GGl~aV 156 (530)
T 3dh4_A 91 KRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------------GIPLMYSILGLALFALVYSIYGGLSAV 156 (530)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------------TCCHHHHHHHHHHHHHHTTC------C
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CCCHHHHHHHHHHHHHHHHHhcchHHH
Confidence 999998887666554432 22223333334444454443 133445555666666667778888888
Q ss_pred hhHHHHHHHHHHHH
Q 013427 163 QSLSVIAAVMSFAY 176 (443)
Q Consensus 163 ~~~s~~~~~~~~~~ 176 (443)
.+...+-.+..+.-
T Consensus 157 ~~TD~iQ~~im~~g 170 (530)
T 3dh4_A 157 VWTDVIQVFFLVLG 170 (530)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888776655543
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.72 E-value=0.017 Score=59.09 Aligned_cols=149 Identities=12% Similarity=0.061 Sum_probs=79.8
Q ss_pred ccchHHHHHHHHHhhhhhhh-hhhHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccHHHHHHH
Q 013427 6 FEGTLWTAVAHIITGVIGSG-VLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 84 (443)
Q Consensus 6 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~l~~~ 84 (443)
|+-++|...+.+..+.+++. .++.|-...+.|+......... +.........+..-.++. +..|.+|.-++
T Consensus 49 R~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~r~-------~~~T~~e~l~~ 120 (593)
T 2xq2_A 49 KSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEK-------GIYTIPEFVEK 120 (593)
T ss_dssp --CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHHHT-------TCCSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHhC-------CCCCcHHHHHH
Confidence 44456777777766655554 4678888778886432111110 000011112222222211 56799999999
Q ss_pred HhcccccchhhHHHHH-HhhhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCCCCchh
Q 013427 85 CLGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 163 (443)
Q Consensus 85 ~~G~~~~~~~~i~~~~-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 163 (443)
-||++.+.+..+...+ ..+......+...+..++.+.+ .+....+++..+++........++...
T Consensus 121 Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~av~ 186 (593)
T 2xq2_A 121 RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAVV 186 (593)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHTTC---CC
T ss_pred HccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 9999887666555443 2333333344445555555542 233444555566666667778888888
Q ss_pred hHHHHHHHHHHHH
Q 013427 164 SLSVIAAVMSFAY 176 (443)
Q Consensus 164 ~~s~~~~~~~~~~ 176 (443)
+...+-.+..+..
T Consensus 187 ~TD~iQ~iiml~~ 199 (593)
T 2xq2_A 187 WTDVIQVFFLVLG 199 (593)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877776555443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=76.45 E-value=62 Score=31.95 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=25.3
Q ss_pred CCCcccc--hHHHHHHHHHhhhhhhh-hhhHHHHHHhcCc
Q 013427 2 MSDDFEG--TLWTAVAHIITGVIGSG-VLSLAWSMAQLGW 38 (443)
Q Consensus 2 m~~~~~~--s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~ 38 (443)
|+++|+. +-.+-++..+++.+|-| +.=.||-..+-|-
T Consensus 1 m~~~R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGG 40 (519)
T 2a65_A 1 MEVKREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGG 40 (519)
T ss_dssp ----CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTT
T ss_pred CCcccccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCC
Confidence 5554432 34677778899999999 7779999888774
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=50.69 E-value=1.4e+02 Score=29.44 Aligned_cols=105 Identities=9% Similarity=0.028 Sum_probs=53.1
Q ss_pred CcccchHHHHHHHHHhhhhhhhhhhH----HHHHHhc---Cc-----cHHHHHHHHHHHHHHHHHHHHHH---cccCCCC
Q 013427 4 DDFEGTLWTAVAHIITGVIGSGVLSL----AWSMAQL---GW-----IAGPLAMVIFASVTLFATFLLCD---CHRGPDP 68 (443)
Q Consensus 4 ~~~~~s~~~a~~~l~~~~iG~GiL~L----P~af~~~---G~-----~~g~i~l~~~~~~~~~s~~~l~~---~~~~~~~ 68 (443)
++.+-|.++-+..++.+-+|.|++.- |..-.+. |. -.+.....+=+.+.-|+.+.++- ++..+++
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk 171 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRV 171 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCT
T ss_pred CCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcC
Confidence 34556788889999999999999854 3222111 11 12233333333333344443332 3322211
Q ss_pred -CCCCCCcccHHHHHHH-HhcccccchhhHHHHH-HhhhhhHHH
Q 013427 69 -EYGPGRNRSYLEAVDM-CLGKTNAWACSFFVHV-GLYGTAIAY 109 (443)
Q Consensus 69 -~~g~~~~~~y~~l~~~-~~G~~~~~~~~i~~~~-~~~g~~~~y 109 (443)
.+-+-+..-|+-++++ .-|+.|+ ++|+.-++ +.+|...+.
T Consensus 172 ~~pl~iss~l~PllG~r~~~G~~G~-~IDilav~atv~GvatSL 214 (539)
T 4ain_A 172 GRKQLLSSAFVPLIGEKGAEGWLGK-LIDILAIIATVFGTACSL 214 (539)
T ss_dssp CCCSCTTGGGHHHHHHHHTTSHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHhHhhcCCCccCCcchh-hhHHHHHHHHHHHHhhhH
Confidence 1222133457777777 6676655 45554444 444444443
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=39.06 E-value=1e+02 Score=30.30 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHhhHHHHHhhhcccc-CCCCccccccchhHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHH
Q 013427 97 FVHVGLYGTAIAYTVTSAISMRAIQKSNCYHR-EGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFA 175 (443)
Q Consensus 97 ~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 175 (443)
.........+..+.+..+|+....+...+... +++++++...+-.|-++...+...|.....++.++..+.++.+ -+.
T Consensus 411 i~~~l~iil~~~FfvTSaDS~s~vi~~~ss~g~~~~~~p~~~~rifW~v~~g~va~~LL~~ggl~aLQ~~~ii~al-Pf~ 489 (509)
T 2wsw_A 411 ATMWGFFILCFIATVTLINACSYTLAMSTCRSMKEGADPPLLVRIGWSVLVGIIGIILLALGGLKPIQTAIIAGGC-PLF 489 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh-hHH
Q ss_pred HHHHHHHHHHHHHhhCCccc
Q 013427 176 YSFIGFGLGVAKVIGNGFVM 195 (443)
Q Consensus 176 ~~~i~~~~~~~~~~~~~~~~ 195 (443)
++.+.+..++.+..++.+.|
T Consensus 490 ~v~l~~~~sl~k~l~~d~~~ 509 (509)
T 2wsw_A 490 FVNIMVTLSFIKDAKVHWKD 509 (509)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhhcCC
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=23.16 E-value=3.6e+02 Score=25.23 Aligned_cols=48 Identities=15% Similarity=0.003 Sum_probs=39.5
Q ss_pred ccHHHHHHHHhcccccchhhHHHHHHhhhhhHHHHHHHHhhHHHHHhh
Q 013427 76 RSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKS 123 (443)
Q Consensus 76 ~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~ 123 (443)
....+..+..+|+++..++.+...+..+++..+.+...+..+..+-++
T Consensus 258 ~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 305 (444)
T 3gia_A 258 NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKD 305 (444)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 356778888889888888889888999999888888888888877654
No 11
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=20.78 E-value=6.1e+02 Score=24.95 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=49.9
Q ss_pred hhhhHHHHHHHHhhHHHHHhhhccccCCCCccccccchhHHHHHHHHHHHhhcCCC---CCchhhHHHHHHHHHHHHHHH
Q 013427 103 YGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPD---FHNIQSLSVIAAVMSFAYSFI 179 (443)
Q Consensus 103 ~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~---l~~l~~~s~~~~~~~~~~~~i 179 (443)
...+..+.+..+|+....+...+.. ++++++...+-.|-++...+...|..... ++.++..+.++-+= +.++.+
T Consensus 418 iili~~FfvTSaDS~s~vl~~~ss~--g~~~p~~~~rifWgv~~g~va~~LL~~GG~~~L~aLQt~~ii~alP-f~~v~l 494 (539)
T 4ain_A 418 MILLGTFFITSADSASTVMGTMSQH--GQLEANKWVTAAWGVATAAIGLTLLLSGGDNALSNLQNVTIVAATP-FLFVVI 494 (539)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHTT--TCSSCCHHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHcC--CCCCCCcchhhHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHhH-HHHHHH
Confidence 3445678888899999888776543 23344445566777777776666666665 77777776655432 222223
Q ss_pred HHHHHHHHHhh
Q 013427 180 GFGLGVAKVIG 190 (443)
Q Consensus 180 ~~~~~~~~~~~ 190 (443)
.+..++.+..+
T Consensus 495 lm~~sl~k~l~ 505 (539)
T 4ain_A 495 GLMFALVKDLS 505 (539)
T ss_dssp THHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 33445555443
Done!