BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013429
(443 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A2Q1V6|ATG4_MEDTR Cysteine protease ATG4 OS=Medicago truncatula GN=ATG4 PE=3 SV=1
Length = 487
Score = 556 bits (1432), Expect = e-157, Method: Compositional matrix adjust.
Identities = 282/412 (68%), Positives = 324/412 (78%), Gaps = 5/412 (1%)
Query: 34 GSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNG 93
G + V+++V+ GSMRR ERVLG RT +SSS DIWLLGVCHKI+Q E+ GD N
Sbjct: 79 GWAAAVRKVVSGGSMRRFQERVLGSCRTDVSSSDGDIWLLGVCHKISQHESTGDVDIRNV 138
Query: 94 LAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRK 153
A F QDF SRILI+YRKGFD I DSK TSDV WGCMLRSSQMLVAQALLFH+LGR WRK
Sbjct: 139 FAAFEQDFFSRILITYRKGFDAIEDSKYTSDVNWGCMLRSSQMLVAQALLFHKLGRSWRK 198
Query: 154 PLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARC 213
+ KP D+EY++IL LFGDSE + FSIHNLLQAGK YGLA GSWVGPYAMCR+WE LAR
Sbjct: 199 TVDKPVDKEYIDILQLFGDSEAAAFSIHNLLQAGKGYGLAVGSWVGPYAMCRTWEVLARN 258
Query: 214 QRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 273
QR + G Q LPMAIYVVSGDEDGERGGAPVVCI+DA + C FS+G WTP+LLLVP
Sbjct: 259 QREKNEQGEQLLPMAIYVVSGDEDGERGGAPVVCIEDACKRCLEFSRGLVPWTPLLLLVP 318
Query: 274 LVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVIN 333
LVLGL+KVN RYIP L+ TF FPQSLGI+GGKPGASTYI+GVQ + A YLDPH+V+PV+N
Sbjct: 319 LVLGLDKVNLRYIPLLQSTFKFPQSLGILGGKPGASTYIIGVQNDKAFYLDPHEVKPVVN 378
Query: 334 IGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAP 393
I D E +TS+YH ++ RH+ LDSIDPSLAIGFYCRDKDDFDDFC+RA+KLAEESNGAP
Sbjct: 379 ITGDTQEPNTSSYHCNISRHMPLDSIDPSLAIGFYCRDKDDFDDFCSRATKLAEESNGAP 438
Query: 394 LFTVTQTHKKP--VNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 443
LFTV Q+ P V + V G+ EDDSL + +NDA +EDDWQ L
Sbjct: 439 LFTVAQSRSLPMQVTSNSVSGDDTRFEEDDSLSMNLVNDA---GNEDDWQFL 487
>sp|Q8S929|ATG4A_ARATH Cysteine protease ATG4a OS=Arabidopsis thaliana GN=ATG4A PE=2 SV=1
Length = 467
Score = 520 bits (1340), Expect = e-147, Method: Compositional matrix adjust.
Identities = 244/377 (64%), Positives = 306/377 (81%), Gaps = 3/377 (0%)
Query: 34 GSSETVKRL-VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNN 92
G + VKR+ + +G++RR ERVLGP+RTG+ S+TSD+WLLGVC+KI+ DE G+
Sbjct: 74 GWTAFVKRVSMASGAIRRFQERVLGPNRTGLPSTTSDVWLLGVCYKISADENSGETDTGT 133
Query: 93 GLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWR 152
LA DFSS+IL++YRKGF+P D+ TSDV WGCM+RSSQML AQALLFHRLGR W
Sbjct: 134 VLAALQLDFSSKILMTYRKGFEPFRDTTYTSDVNWGCMIRSSQMLFAQALLFHRLGRAWT 193
Query: 153 KPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALAR 212
K + P ++EY+E L FGDSE S FSIHNL+ AG +YGLAAGSWVGPYA+CR+WE+LA
Sbjct: 194 KKSELP-EQEYLETLEPFGDSEPSAFSIHNLIIAGASYGLAAGSWVGPYAICRAWESLAC 252
Query: 213 CQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLV 272
+R +T Q+LPMA+++VSG EDGERGGAP++CI+DA++ C FSKGQ++WTPI+LLV
Sbjct: 253 KKRKQTDSKNQTLPMAVHIVSGSEDGERGGAPILCIEDATKSCLEFSKGQSEWTPIILLV 312
Query: 273 PLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVI 332
PLVLGL+ VNPRYIP+L TFTFPQS+GI+GGKPGASTYIVGVQE+ YLDPH+VQ V+
Sbjct: 313 PLVLGLDSVNPRYIPSLVATFTFPQSVGILGGKPGASTYIVGVQEDKGFYLDPHEVQQVV 372
Query: 333 NIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGA 392
+ K+ + DTS+YH +V+R++ L+S+DPSLA+GFYCRDKDDFDDFC RA KLAEESNGA
Sbjct: 373 TVNKETPDVDTSSYHCNVLRYVPLESLDPSLALGFYCRDKDDFDDFCLRALKLAEESNGA 432
Query: 393 PLFTVTQTHKKPVNHSD 409
PLFTVTQTH +N S+
Sbjct: 433 PLFTVTQTHTA-INQSN 448
>sp|Q9M1Y0|ATG4B_ARATH Cysteine protease ATG4b OS=Arabidopsis thaliana GN=ATG4B PE=1 SV=1
Length = 477
Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust.
Identities = 247/401 (61%), Positives = 312/401 (77%), Gaps = 10/401 (2%)
Query: 43 VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFS 102
+ +G++RR +RVLGPSRTGISSSTS+IWLLGVC+KI++ E+ +A LA F QDFS
Sbjct: 87 MASGAIRRFQDRVLGPSRTGISSSTSEIWLLGVCYKISEGESSEEADAGRVLAAFRQDFS 146
Query: 103 SRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDRE 162
S IL++YR+GF+PIGD+ TSDV WGCMLRS QML AQALLF RLGR WRK +P D +
Sbjct: 147 SLILMTYRRGFEPIGDTTYTSDVNWGCMLRSGQMLFAQALLFQRLGRSWRKKDSEPADEK 206
Query: 163 YVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGC 222
Y+EIL LFGD+E S FSIHNL+ AG++YGLAAGSWVGPYA+CRSWE+LAR + ET
Sbjct: 207 YLEILELFGDTEASAFSIHNLILAGESYGLAAGSWVGPYAVCRSWESLARKNKEETDDKH 266
Query: 223 QSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVN 282
+S MA+++VSG EDGERGGAP++CI+D ++ C FS+G+ +W PILLLVPLVLGL++VN
Sbjct: 267 KSFSMAVHIVSGSEDGERGGAPILCIEDVTKTCLEFSEGETEWPPILLLVPLVLGLDRVN 326
Query: 283 PRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEAD 342
PRYIP+L TFTFPQSLGI+GGKPGASTYIVGVQE+ YLDPHDVQ V+ + K++ + D
Sbjct: 327 PRYIPSLIATFTFPQSLGILGGKPGASTYIVGVQEDKGFYLDPHDVQQVVTVKKENQDVD 386
Query: 343 TSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHK 402
TS+YH + +R++ L+S+DPSLA+GFYC+ KDDFDDFC RA+KLA +SNGAPLFTVTQ+H+
Sbjct: 387 TSSYHCNTLRYVPLESLDPSLALGFYCQHKDDFDDFCIRATKLAGDSNGAPLFTVTQSHR 446
Query: 403 KPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 443
+ N + + + G HEDDWQLL
Sbjct: 447 R--NDCGIAETSSSTETSTEIS--------GEEHEDDWQLL 477
>sp|Q7XPW8|ATG4B_ORYSJ Cysteine protease ATG4B OS=Oryza sativa subsp. japonica GN=ATG4B
PE=2 SV=1
Length = 478
Score = 492 bits (1266), Expect = e-138, Method: Compositional matrix adjust.
Identities = 256/435 (58%), Positives = 324/435 (74%), Gaps = 17/435 (3%)
Query: 14 FSKSTPDTPNRSLASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLL 73
F + N+S S S ++R+V +GSM R LG S+ SS D+W L
Sbjct: 56 FEAHQDSSANKSPKSSSGSYDWSRVLRRIVCSGSMWRF----LGTSKVLTSS---DVWFL 108
Query: 74 GVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRS 133
G C+K++ +E+ D+ +G A F +DFSSRI I+YR+GFD I DSK TSDV WGCM+RS
Sbjct: 109 GKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDAISDSKYTSDVNWGCMVRS 168
Query: 134 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLA 193
SQMLVAQAL+FH LGR WR+PL+KP++ EY+ ILH+FGDSE FSIHNLLQAG +YGLA
Sbjct: 169 SQMLVAQALIFHHLGRSWRRPLEKPYNPEYIGILHMFGDSEACAFSIHNLLQAGNSYGLA 228
Query: 194 AGSWVGPYAMCRSWEALARCQRAETGL--GCQSLPMAIYVVSGDEDGERGGAPVVCIDDA 251
AGSWVGPYAMCR+W+ L R R + + G +S PMA+YVVSGDEDGERGGAPVVCID A
Sbjct: 229 AGSWVGPYAMCRAWQTLVRTNREQHEVVDGNESFPMALYVVSGDEDGERGGAPVVCIDVA 288
Query: 252 SRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTY 311
++ C F+KGQ+ W+PILLLVPLVLGL+K+NPRYIP L+ TFTFPQSLGI+GGKPG STY
Sbjct: 289 AQLCCDFNKGQSTWSPILLLVPLVLGLDKINPRYIPLLKETFTFPQSLGILGGKPGTSTY 348
Query: 312 IVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRD 371
I GVQ++ A+YLDPH+VQ ++I D++EADTS+YH +R + LD IDPSLAIGFYCRD
Sbjct: 349 IAGVQDDRALYLDPHEVQMAVDIAADNIEADTSSYHCSTVRDLALDLIDPSLAIGFYCRD 408
Query: 372 KDDFDDFCARASKLAEESNGAPLFTVTQT---HKKPVNHSDVLGETGGVPEDDSLGVMSM 428
KDDFDDFC+RA++L +++NGAPLFTV Q+ K+ N DVLG +G D ++ V +
Sbjct: 409 KDDFDDFCSRATELVDKANGAPLFTVVQSVQPSKQMYNQDDVLGISG----DGNINVEDL 464
Query: 429 NDAVGNAHEDDWQLL 443
DA G E++WQ+L
Sbjct: 465 -DASGETGEEEWQIL 478
>sp|Q2XPP4|ATG4B_ORYSI Cysteine protease ATG4B OS=Oryza sativa subsp. indica GN=ATG4B PE=1
SV=2
Length = 478
Score = 487 bits (1253), Expect = e-137, Method: Compositional matrix adjust.
Identities = 254/435 (58%), Positives = 322/435 (74%), Gaps = 17/435 (3%)
Query: 14 FSKSTPDTPNRSLASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLL 73
F + N+S S ++R+V +GSM R LG S+ SS D+W L
Sbjct: 56 FEAHQDSSANKSPKSSSGSYDWLRVLRRIVCSGSMWRF----LGTSKVLTSS---DVWFL 108
Query: 74 GVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRS 133
G C+K++ +E+ D+ +G A F +DFSSRI I+YR+GFD I DSK TSDV WGCM+RS
Sbjct: 109 GKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDAISDSKYTSDVNWGCMVRS 168
Query: 134 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLA 193
SQMLVAQAL+FH LGR WR+P +KP++ EY+ ILH+FGDSE FSIHNLLQAG +YGLA
Sbjct: 169 SQMLVAQALIFHHLGRSWRRPSEKPYNPEYIGILHMFGDSEACAFSIHNLLQAGNSYGLA 228
Query: 194 AGSWVGPYAMCRSWEALARCQRAETGL--GCQSLPMAIYVVSGDEDGERGGAPVVCIDDA 251
AGSWVGPYAMCR+W+ L R R + + G +S PMA+YVVSGDEDGERGGAPVVCID A
Sbjct: 229 AGSWVGPYAMCRAWQTLVRTNREQHEVVDGNESFPMALYVVSGDEDGERGGAPVVCIDVA 288
Query: 252 SRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTY 311
++ C F+KGQ+ W+PILLLVPLVLGL+K+NPRYIP L+ TFTFPQSLGI+GGKPG STY
Sbjct: 289 AQLCCDFNKGQSTWSPILLLVPLVLGLDKINPRYIPLLKETFTFPQSLGILGGKPGTSTY 348
Query: 312 IVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRD 371
I GVQ++ A+YLDPH+VQ ++I D++EADTS+YH +R + LD IDPSLAIGFYCRD
Sbjct: 349 IAGVQDDRALYLDPHEVQMAVDIAADNIEADTSSYHCSTVRDLALDLIDPSLAIGFYCRD 408
Query: 372 KDDFDDFCARASKLAEESNGAPLFTVTQT---HKKPVNHSDVLGETGGVPEDDSLGVMSM 428
KDDFDDFC+RA++L +++NGAPLFTV Q+ K+ N DVLG +G D ++ V +
Sbjct: 409 KDDFDDFCSRATELVDKANGAPLFTVVQSVQPSKQMYNQDDVLGISG----DGNINVEDL 464
Query: 429 NDAVGNAHEDDWQLL 443
DA G E++WQ+L
Sbjct: 465 -DASGETGEEEWQIL 478
>sp|A2XHJ5|ATG4A_ORYSI Cysteine protease ATG4A OS=Oryza sativa subsp. indica GN=ATG4A PE=3
SV=1
Length = 473
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 247/434 (56%), Positives = 312/434 (71%), Gaps = 16/434 (3%)
Query: 14 FSKSTPDTPNRSLASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLL 73
F + +R L S ++R+ GSM R LG S+ + ++SD+W L
Sbjct: 52 FEAHQDSSAHRPLKPHSGSYAWSRFLRRIACTGSMWRF----LGASK---ALTSSDVWFL 104
Query: 74 GVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRS 133
G C+K++ +E + +G A F +DFSSRI I+YRKGFD I DSK TSDV WGCM+RS
Sbjct: 105 GKCYKLSSEELSNSSDCESGNAAFLEDFSSRIWITYRKGFDAISDSKYTSDVNWGCMVRS 164
Query: 134 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLA 193
SQMLVAQAL+FH LGR WRKP QKP+ EY+ ILH+FGDSE FSIHNLLQAGK+YGLA
Sbjct: 165 SQMLVAQALIFHHLGRSWRKPSQKPYSPEYIGILHMFGDSEACAFSIHNLLQAGKSYGLA 224
Query: 194 AGSWVGPYAMCRSWEALARCQRA--ETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDA 251
AGSWVGPYAMCR+W+ L R R E G + PMA+YVVSGDEDGERGGAPVVCID A
Sbjct: 225 AGSWVGPYAMCRAWQTLVRTNREHHEAVDGNGNFPMALYVVSGDEDGERGGAPVVCIDVA 284
Query: 252 SRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTY 311
++ C F+KGQ+ W+PILLLVPLVLGL+K+NPRYIP L+ TFTFPQSLGI+GGKPG STY
Sbjct: 285 AQLCCDFNKGQSTWSPILLLVPLVLGLDKLNPRYIPLLKETFTFPQSLGILGGKPGTSTY 344
Query: 312 IVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRD 371
+ GVQ++ +YLDPH+VQ ++I D+LEADTS+YH +R + LD IDPSLAIGFYCRD
Sbjct: 345 VAGVQDDRVLYLDPHEVQLAVDIAADNLEADTSSYHCSTVRDLALDLIDPSLAIGFYCRD 404
Query: 372 KDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMN-- 429
KDDFDDFC+RAS+L +++NGAPLFTV Q+ + + +G D + ++++
Sbjct: 405 KDDFDDFCSRASELVDKANGAPLFTVMQSVQPSKQMYNEESSSG-----DGMDIINVEGL 459
Query: 430 DAVGNAHEDDWQLL 443
D G E++WQ+L
Sbjct: 460 DGSGETGEEEWQIL 473
>sp|Q75KP8|ATG4A_ORYSJ Cysteine protease ATG4A OS=Oryza sativa subsp. japonica GN=ATG4A
PE=3 SV=1
Length = 474
Score = 469 bits (1206), Expect = e-131, Method: Compositional matrix adjust.
Identities = 252/435 (57%), Positives = 312/435 (71%), Gaps = 18/435 (4%)
Query: 14 FSKSTPDTPNRSLASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLL 73
F + NRSL S ++R+ GSM R LG S+ + ++SD+W L
Sbjct: 53 FEAHQDSSANRSLKPHSGSYAWSRFLRRIACTGSMWRF----LGASK---ALTSSDVWFL 105
Query: 74 GVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRS 133
G C+K++ +E + +G A F +DFSSRI I+YRKGFD I DSK TSDV WGCM+RS
Sbjct: 106 GKCYKLSSEELSNSSDCESGNAAFLEDFSSRIWITYRKGFDAISDSKYTSDVNWGCMVRS 165
Query: 134 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLA 193
SQMLVAQAL+FH LGR WRKP QKP+ EY+ ILH+FGDSE FSIHNLLQAGK+YGLA
Sbjct: 166 SQMLVAQALIFHHLGRSWRKPSQKPYSPEYIGILHMFGDSEACAFSIHNLLQAGKSYGLA 225
Query: 194 AGSWVGPYAMCRSWEALARCQRA--ETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDA 251
AGSWVGPYAMCR+W+ L R E G + PMA+YVVSGDEDGERGGAPVVCID A
Sbjct: 226 AGSWVGPYAMCRAWQTLVCTNREHHEAVDGNGNFPMALYVVSGDEDGERGGAPVVCIDVA 285
Query: 252 SRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTY 311
++ C F+K Q+ W+PILLLVPLVLGL+K+NPRYIP L+ T TFPQSLGI+GGKPG STY
Sbjct: 286 AQLCCDFNKNQSTWSPILLLVPLVLGLDKLNPRYIPLLKETLTFPQSLGILGGKPGTSTY 345
Query: 312 IVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRD 371
I GVQ++ A+YLDPH+VQ ++I D+LEA TS+YH +R + LD IDPSLAIGFYCRD
Sbjct: 346 IAGVQDDRALYLDPHEVQLAVDIAADNLEAGTSSYHCSTVRDLALDLIDPSLAIGFYCRD 405
Query: 372 KDDFDDFCARASKLAEESNGAPLFTVTQT---HKKPVNHSDVLGETGGVPEDDSLGVMSM 428
KDDFDDFC+RAS+L +++NGAPLFTV Q+ K+ N G+ G+ DS+ V +
Sbjct: 406 KDDFDDFCSRASELVDKANGAPLFTVVQSVQPSKQMYNEESSSGD--GM---DSINVEGL 460
Query: 429 NDAVGNAHEDDWQLL 443
D G E++WQ+L
Sbjct: 461 -DGSGETGEEEWQIL 474
>sp|Q8BGE6|ATG4B_MOUSE Cysteine protease ATG4B OS=Mus musculus GN=Atg4b PE=1 SV=2
Length = 393
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/366 (32%), Positives = 184/366 (50%), Gaps = 40/366 (10%)
Query: 66 STSDIWLLGVCHKI--AQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITS 123
++ +W+LG + I +DE L D A SR+ +YR+ F IG + TS
Sbjct: 22 TSEPVWILGRKYSIFTEKDEILSDVA-------------SRLWFTYRRNFPAIGGTGPTS 68
Query: 124 DVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNL 183
D GWGCMLR QM+ AQAL+ LGR WR +K Y +L+ F D + S +SIH +
Sbjct: 69 DTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFNVLNAFLDRKDSYYSIHQI 128
Query: 184 LQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYV-----VSGDEDG 238
Q G G + G W GP + + + LA + +A+++ V +E
Sbjct: 129 AQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSS--------LAVHIAMDNTVVMEEIR 180
Query: 239 ERGGAPVVCI------DDASRHCSVFSKGQ------ADWTPILLLVPLVLGLEKVNPRYI 286
A + C D+ RHC+ F G + W P++LL+PL LGL +N Y+
Sbjct: 181 RLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDINEAYV 240
Query: 287 PTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTY 346
TL+ F PQSLG++GGKP ++ Y +G E IYLDPH QP + + D S +
Sbjct: 241 ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPDESFH 300
Query: 347 HSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVN 406
+ + +DPS+A+GF+C+ ++DF+D+C + KL++ P+F + + +
Sbjct: 301 CQHPPSRMGIGELDPSIAVGFFCKTEEDFNDWCQQVKKLSQLGGALPMFELVEQQPSHLA 360
Query: 407 HSDVLG 412
DVL
Sbjct: 361 CQDVLN 366
>sp|Q6DG88|ATG4B_DANRE Cysteine protease ATG4B OS=Danio rerio GN=atg4b PE=2 SV=2
Length = 394
Score = 206 bits (524), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 176/338 (52%), Gaps = 18/338 (5%)
Query: 100 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF 159
D +SR+ +YRK F PIG + TSD GWGCMLR QM++ +AL+ LGR W+ +
Sbjct: 45 DVTSRLWFTYRKNFQPIGGTGPTSDTGWGCMLRCGQMILGEALICRHLGRDWKWSPGQRQ 104
Query: 160 DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP---------YAMCRSWEAL 210
EYV IL+ F D + S +SIH + Q G G + G W GP A+ SW L
Sbjct: 105 RPEYVSILNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDSWSRL 164
Query: 211 ARCQRAETGLGCQSLPMAIYVVSGDEDGERGGA-----PVVCIDDASRHCSVFSKGQADW 265
A + + + + + D +RG P D C++ + A W
Sbjct: 165 AVHVAMDNTVVIEEIKR---LCMPWLDFDRGACAVSEEPREMNGDLEGACALAEEETALW 221
Query: 266 TPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDP 325
P++LL+PL LGL +N YI L+ F PQSLG++GGKP ++ Y +G + IYLDP
Sbjct: 222 KPLVLLIPLRLGLSDINEAYIEPLKQCFMMPQSLGVIGGKPNSAHYFIGFVGDELIYLDP 281
Query: 326 HDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKL 385
H QP ++ +D D S + +H+ +DPS+A GF+C+ +DDFDD+CA+ K+
Sbjct: 282 HTTQPAVDPSEDGHFPDDSYHCQHPPCRMHICELDPSIAAGFFCQTEDDFDDWCAQIRKV 341
Query: 386 AEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSL 423
+ G P+F + + + +DVL T + D L
Sbjct: 342 S-NCRGLPMFELVDSQPSHLITADVLNLTPDFSDSDRL 378
>sp|Q9Y4P1|ATG4B_HUMAN Cysteine protease ATG4B OS=Homo sapiens GN=ATG4B PE=1 SV=2
Length = 393
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 181/366 (49%), Gaps = 40/366 (10%)
Query: 66 STSDIWLLGVCHKI--AQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITS 123
++ +W+LG + I +DE L D A SR+ +YRK F IG + TS
Sbjct: 22 TSEPVWILGRKYSIFTEKDEILSDVA-------------SRLWFTYRKNFPAIGGTGPTS 68
Query: 124 DVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNL 183
D GWGCMLR QM+ AQAL+ LGR WR +K Y +L+ F D + S +SIH +
Sbjct: 69 DTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQI 128
Query: 184 LQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYV-----VSGDEDG 238
Q G G + G W GP + + + LA + +A+++ V +E
Sbjct: 129 AQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSS--------LAVHIAMDNTVVMEEIR 180
Query: 239 ERGGAPVVCID------DASRHCSVFSKGQ------ADWTPILLLVPLVLGLEKVNPRYI 286
V C D+ RHC+ F G + W P++LL+PL LGL +N Y+
Sbjct: 181 RLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYV 240
Query: 287 PTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTY 346
TL+ F PQSLG++GGKP ++ Y +G E IYLDPH QP + D S +
Sbjct: 241 ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFH 300
Query: 347 HSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVN 406
+ + +DPS+A+GF+C+ +DDF+D+C + KL+ P+F + + +
Sbjct: 301 CQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVELQPSHLA 360
Query: 407 HSDVLG 412
DVL
Sbjct: 361 CPDVLN 366
>sp|Q8C9S8|ATG4A_MOUSE Cysteine protease ATG4A OS=Mus musculus GN=Atg4a PE=2 SV=2
Length = 396
Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 176/353 (49%), Gaps = 50/353 (14%)
Query: 70 IWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGC 129
+W+LG H + +++ + D S+R+ +YR+ F PIG + +SD GWGC
Sbjct: 29 VWILGKQHPLKTEKS-----------KLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGC 77
Query: 130 MLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKA 189
MLR QM++AQAL+ LGR W QK +EY IL F D + +SIH + Q G
Sbjct: 78 MLRCGQMMLAQALICRHLGRDWNWERQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVG 137
Query: 190 YGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCID 249
G + G W GP + + + LA + +A+YV + V I+
Sbjct: 138 EGKSIGEWFGPNTVAQVIKKLALFDEWNS--------LAVYVSMDN---------TVVIE 180
Query: 250 DASRHCSVFSKGQAD---------------------WTPILLLVPLVLGLEKVNPRYIPT 288
D + C V G AD W P+LL+VPL LG+ ++NP Y+
Sbjct: 181 DIKKMCCVLPVGAADPAGDFLTASNQSRDTSVPCSAWKPLLLIVPLRLGINQINPVYVEA 240
Query: 289 LRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHS 348
+ F PQSLG +GGKP + Y +G + I+LDPH Q ++I + L D + +
Sbjct: 241 FKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDIEESGLVDDQTFHCL 300
Query: 349 DVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTH 401
+ + + ++DPS+A+GF+C+++ DFD++C+ K + N +F + Q H
Sbjct: 301 QSPQRMSILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKEN-LRMFELVQKH 352
>sp|Q6PZ03|ATG4B_BOVIN Cysteine protease ATG4B OS=Bos taurus GN=ATG4B PE=2 SV=1
Length = 393
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/359 (33%), Positives = 175/359 (48%), Gaps = 26/359 (7%)
Query: 66 STSDIWLLGVCHKI--AQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITS 123
++ +W+LG + + +DE L D A SR+ +YRK F IG + TS
Sbjct: 22 TSEPVWILGRKYSVLTEKDEILADVA-------------SRLWFTYRKNFPAIGGTGPTS 68
Query: 124 DVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNL 183
D GWGCMLR QM+ AQAL+ LGR WR +K Y +L F D + S +SIH +
Sbjct: 69 DTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYCSVLQAFLDRKDSCYSIHQI 128
Query: 184 LQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGA 243
Q G G + G W GP + + + LA + L V++ R
Sbjct: 129 AQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD-TWSALAVHVAMDNTVVMADIRRLCRSSL 187
Query: 244 PVVCID----DASRHCSVF------SKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTF 293
P + D+ RHC+ F A W P++LL+PL LGL VN Y TL+ F
Sbjct: 188 PCAGAEAFPADSERHCNGFPAGAEGGGRAAPWRPLVLLIPLRLGLADVNAAYAGTLKHCF 247
Query: 294 TFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRH 353
PQSLG++GGKP ++ Y +G E IYLDPH QP + D S +
Sbjct: 248 RMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVAAADRCPVPDESFHCQHPPGR 307
Query: 354 IHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLG 412
+ + +DPS+A+GF+C +DDF+D+C + SKL+ P+F + + + DVL
Sbjct: 308 MSIAELDPSIAVGFFCETEDDFNDWCQQVSKLSLLGGALPMFELVEQQPSHLACPDVLN 366
>sp|Q640G7|ATG4B_XENLA Cysteine protease ATG4B OS=Xenopus laevis GN=atg4b PE=2 SV=1
Length = 384
Score = 199 bits (505), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/343 (33%), Positives = 169/343 (49%), Gaps = 36/343 (10%)
Query: 99 QDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKP 158
D +SR+ +YR+ F IG + TSD GWGCMLR QM+ AQAL+ +GR WR QKP
Sbjct: 44 NDITSRLWFTYRRNFQAIGGTGPTSDTGWGCMLRCGQMIFAQALICRHVGRDWRWDKQKP 103
Query: 159 FDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAET 218
EY+ IL F D + S +SIH + Q G G G W GP + + LA + +
Sbjct: 104 -KGEYLNILTAFLDKKDSYYSIHQIAQMGVGEGKYIGQWYGPNTVAQVLRKLAVFDQWSS 162
Query: 219 GLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQAD-------------- 264
+A+++ + V +D+ R C S +D
Sbjct: 163 --------IAVHIAMDN---------TVVVDEIRRLCRAGSGESSDAGALSNGYTGDSDP 205
Query: 265 ----WTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESA 320
W P++LL+PL LGL ++N YI TL+ F PQSLG++GG+P ++ Y +G +
Sbjct: 206 SCAQWKPLVLLIPLRLGLSEINEAYIETLKHCFMVPQSLGVIGGRPNSAHYFIGYVGDEL 265
Query: 321 IYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCA 380
IYLDPH Q + D S + +H+ IDPS+A+GF+C ++DF+D+C
Sbjct: 266 IYLDPHTTQLSVEPSDCSFIEDESFHCQHPPCRMHVSEIDPSIAVGFFCSSQEDFEDWCQ 325
Query: 381 RASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSL 423
KL+ P+F V +++ DVL T + D L
Sbjct: 326 HIKKLSLSGGALPMFEVVDQLPLHLSNPDVLNLTPDSSDADRL 368
>sp|Q5R699|ATG4A_PONAB Cysteine protease ATG4A OS=Pongo abelii GN=ATG4A PE=2 SV=1
Length = 398
Score = 196 bits (498), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 178/356 (50%), Gaps = 53/356 (14%)
Query: 70 IWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGC 129
+W+LG H + +++ + D S+R+ +YR+ F PIG + +SD GWGC
Sbjct: 29 VWILGKQHLLKTEKS-----------KLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGC 77
Query: 130 MLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKA 189
MLR QM++AQAL+ LGR W QK +EY IL F D + +SIH + Q G
Sbjct: 78 MLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVG 137
Query: 190 YGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCID 249
G + G W GP + + + LA + +A+YV + V I+
Sbjct: 138 EGKSIGEWFGPNTVAQVLKKLALFDEWNS--------LAVYVSMDN---------TVVIE 180
Query: 250 DASRHCSVF--------------------SKGQAD----WTPILLLVPLVLGLEKVNPRY 285
D + C V SKG + W P+LL+VPL LG+ ++NP Y
Sbjct: 181 DIKKMCRVLPLGADTAGDRPPDSLTASNLSKGTSAYCSAWKPLLLIVPLRLGINQINPVY 240
Query: 286 IPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTST 345
+ + F PQSLG +GGKP + Y +G + I+LDPH Q ++ G++ D +
Sbjct: 241 VDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTGENGTVNDQTF 300
Query: 346 YHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTH 401
+ + +++ ++DPS+A+GF+C+++ DFD++C+ K + N +F + Q H
Sbjct: 301 HCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKEN-LRMFELVQKH 355
>sp|Q8WYN0|ATG4A_HUMAN Cysteine protease ATG4A OS=Homo sapiens GN=ATG4A PE=1 SV=1
Length = 398
Score = 194 bits (494), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 178/346 (51%), Gaps = 33/346 (9%)
Query: 70 IWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGC 129
+W+LG H + +++ + D S+R+ +YR+ F PIG + +SD GWGC
Sbjct: 29 VWILGKQHLLKTEKS-----------KLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGC 77
Query: 130 MLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKA 189
MLR QM++AQAL+ LGR W QK +EY IL F D + +SIH + Q G
Sbjct: 78 MLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVG 137
Query: 190 YGLAAGSWVGP---------YAMCRSWEALARCQRAETGLGCQSLPMAIYVV--SGDEDG 238
G + G W GP A+ W +LA + + + + V+ S D G
Sbjct: 138 EGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAG 197
Query: 239 ERGGAPVVCIDDA---SRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTF 295
+R + + + S +CS W P+LL+VPL LG+ ++NP Y+ + F
Sbjct: 198 DRPPDSLTASNQSKGTSAYCSA-------WKPLLLIVPLRLGINQINPVYVDAFKECFKM 250
Query: 296 PQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIH 355
PQSLG +GGKP + Y +G + I+LDPH Q ++ ++ D + + + ++
Sbjct: 251 PQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGTVNDQTFHCLQSPQRMN 310
Query: 356 LDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTH 401
+ ++DPS+A+GF+C+++ DFD++C+ K + N +F + Q H
Sbjct: 311 ILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKEN-LRMFELVQKH 355
>sp|Q6PZ02|ATG4B_CHICK Cysteine protease ATG4B OS=Gallus gallus GN=ATG4B PE=2 SV=1
Length = 393
Score = 192 bits (488), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 177/383 (46%), Gaps = 59/383 (15%)
Query: 70 IWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGC 129
+W+LG + + ++ E D +SR+ +YRK F IG + TSD GWGC
Sbjct: 25 VWILGRKYSVFTEKE-----------EILLDVTSRLWFTYRKNFPAIGGTGPTSDTGWGC 73
Query: 130 MLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKA 189
MLR QM+ AQAL+ LGR WR K Y +L+ F D + S +SIH + Q G
Sbjct: 74 MLRCGQMIFAQALVCRHLGRDWRWIKGKRQTDNYFSVLNAFIDKKDSYYSIHQIAQMGVG 133
Query: 190 YGLAAGSWVGPYAMCR---------SWEALA----------------RCQRAETGLGCQS 224
G + G W GP + + +W +LA CQ + G +
Sbjct: 134 EGKSIGQWYGPNTVAQVLKKLATFDTWSSLAVHIAMDNTVVMEEIRRLCQSNFSCAGAAA 193
Query: 225 LPMA----IYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEK 280
P +Y +E G R + W P++LL+PL LGL +
Sbjct: 194 CPAVEADVLYNGYPEEAGVRDKLSL-------------------WKPLVLLIPLRLGLTE 234
Query: 281 VNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLE 340
+N YI TL+ F PQSLG++GGKP ++ Y +G E IYLDPH QP +
Sbjct: 235 INEAYIETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPSDSGCL 294
Query: 341 ADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQT 400
D S + + + +DPS+A+GF+C ++DF+D+C + KL+ P+F + +
Sbjct: 295 PDESFHCQHPPCRMSIAELDPSIAVGFFCHTEEDFNDWCHQIKKLSLVRGALPMFELVER 354
Query: 401 HKKPVNHSDVLGETGGVPEDDSL 423
++ DVL T + D L
Sbjct: 355 QPSHFSNPDVLNLTPDSSDADRL 377
>sp|Q6PZ05|ATG4A_BOVIN Cysteine protease ATG4A OS=Bos taurus GN=ATG4A PE=2 SV=1
Length = 398
Score = 192 bits (487), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 175/344 (50%), Gaps = 29/344 (8%)
Query: 70 IWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGC 129
+W+LG H + +++ + D S+R+ +YR+ F PIG + +SD GWGC
Sbjct: 29 VWILGKQHLLKTEKS-----------KLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGC 77
Query: 130 MLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKA 189
MLR QM++AQAL+ LGR W QK +EY IL F D + +SIH + Q G
Sbjct: 78 MLRCGQMMLAQALICRHLGRDWNWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVG 137
Query: 190 YGLAAGSWVGP---------YAMCRSWEALARCQRAETGLGCQSLPMAIYVVS--GDEDG 238
G + G W GP A+ W +LA + + + + +S D
Sbjct: 138 EGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRTLSLSADTPA 197
Query: 239 ERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQS 298
ER + AS S W P+LL+VPL LG+ ++NP Y+ + F PQS
Sbjct: 198 ERPLESLT----ASNQSKGPSACCTAWKPLLLIVPLRLGINQINPVYVDAFKECFKMPQS 253
Query: 299 LGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHS-DVIRHIHLD 357
LG +GGKP + Y +G + I+LDPH Q ++ +++ AD T+H + +++
Sbjct: 254 LGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDT-EENGTADDQTFHCLQPPQRMNIL 312
Query: 358 SIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTH 401
++DPS+A+GF+C+++ DFD +C+ K + N +F + Q H
Sbjct: 313 NLDPSVALGFFCKEEKDFDSWCSLVQKEILKEN-LRMFELVQKH 355
>sp|Q8BGV9|ATG4D_MOUSE Cysteine protease ATG4D OS=Mus musculus GN=Atg4d PE=1 SV=1
Length = 474
Score = 178 bits (452), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 174/382 (45%), Gaps = 66/382 (17%)
Query: 59 SRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGD 118
SRT S S + L G C+ G + F +DF SR+ ++YR+ F P+
Sbjct: 84 SRTSFSK-ISTVHLCGRCYHFE---------GEGDIQRFQRDFVSRLWLTYRRDFPPLAG 133
Query: 119 SKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWR-------------------------- 152
+TSD GWGCMLRS QM++AQ LL H L R WR
Sbjct: 134 GSLTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWRWVEGTGLASSEMPGPASPSRCRGPGR 193
Query: 153 --------KPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMC 204
L+ DR + I+ F D +PF +H L++ G++ G AG W GP
Sbjct: 194 RGPPRWTQGALEMEQDRWHRRIVSWFADHPRAPFGLHRLVELGRSSGKKAGDWYGP---- 249
Query: 205 RSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQAD 264
+A R C + + VS D V D +R S + A+
Sbjct: 250 ---SVVAHILRKAVE-SCSEVSRLVVYVSQDC--------TVYKADVARLLS-WPDPTAE 296
Query: 265 WTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLD 324
W +++LVP+ LG E +NP Y+P ++ LGI+GGKP S Y +G Q++ +YLD
Sbjct: 297 WKSVVILVPVRLGGETLNPVYVPCVKELLRSELCLGIMGGKPRHSLYFIGYQDDFLLYLD 356
Query: 325 PHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASK 384
PH QP +++ + + ++H R + +DPS +GFY ++ +F+ C+ +
Sbjct: 357 PHYCQPTVDVSQPSFPLE--SFHCTSPRKMAFAKMDPSCTVGFYAGNRKEFETLCSELMR 414
Query: 385 LAEESNGA---PLFTVTQTHKK 403
+ S+ P+FTV + H +
Sbjct: 415 ILSSSSVTERYPMFTVAEGHAQ 436
>sp|Q684M2|ATG4D_PIG Cysteine protease ATG4D OS=Sus scrofa GN=ATG4D PE=3 SV=1
Length = 469
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/378 (29%), Positives = 178/378 (47%), Gaps = 62/378 (16%)
Query: 59 SRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGD 118
SRT S +S + +C + + E GD + F +DF SR+ ++YR+ F P+
Sbjct: 83 SRTSFSKISS----VHLCGRRYRFEGEGD------IQRFQRDFVSRLWLTYRRDFPPLAG 132
Query: 119 SKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWR--------KPLQKPF----------- 159
+TSD GWGCMLRS QM++AQ LL H L R W P P
Sbjct: 133 GCLTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWTWSQGVGLGPPESSPNRYRGPAHWMPP 192
Query: 160 -----------DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWE 208
+R + +I+ F D +PF +H L++ G++ G AG W GP
Sbjct: 193 HWVQAAPELEQERRHRQIVSWFADHPRAPFGLHRLVELGQSSGKKAGDWYGP-------S 245
Query: 209 ALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPI 268
+A R + + +YV + A +V D + A+W +
Sbjct: 246 LVAHILRKAVESCSEVTRLVVYVSQDCTVYKADVARLVARPDPT----------AEWKAV 295
Query: 269 LLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDV 328
++LVP+ LG E +NP Y+P ++ LGI+GGKP S Y +G Q++ +YLDPH
Sbjct: 296 VILVPVRLGGETLNPVYVPCVKELLRSELCLGIMGGKPRHSLYFIGYQDDFLLYLDPHYC 355
Query: 329 QPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEE 388
QP +++ + D + ++H R + +DPS +GFY D+ +F+ C+ +++
Sbjct: 356 QPTVDVSQADFPLE--SFHCTSPRKMAFTKMDPSCTVGFYAGDRKEFETLCSELTRVLSS 413
Query: 389 SNGA---PLFTVTQTHKK 403
S+ P+FT+ + H +
Sbjct: 414 SSATERYPMFTLVEGHAQ 431
>sp|A6SDQ3|ATG4_BOTFB Probable cysteine protease atg4 OS=Botryotinia fuckeliana (strain
B05.10) GN=atg4 PE=3 SV=1
Length = 439
Score = 176 bits (446), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 159/310 (51%), Gaps = 51/310 (16%)
Query: 97 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRS 133
F DF ++I ++YR F I S+ TSD GWGCM+RS
Sbjct: 103 FLDDFEAKIWLTYRSNFPAIAKSQDPKALSAMSLSVRLRSQLVDQGGFTSDTGWGCMIRS 162
Query: 134 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGL 192
Q L+A ALL R+GR WR+ + +R+ IL LF D +P+SIH ++ G A G
Sbjct: 163 GQSLLANALLTLRMGREWRRGVSSNEERK---ILSLFADDPRAPYSIHKFVEHGASACGK 219
Query: 193 AAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDAS 252
G W GP A R +AL+ Q + +Y+ +GD G+ V
Sbjct: 220 HPGEWFGPSATARCIQALSNSQAKSE--------LRVYI-TGD------GSDVY----ED 260
Query: 253 RHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYI 312
+ S+ +D+TP L+LV LGL+K+ P Y L+ + PQS+GI GG+P +S Y
Sbjct: 261 KFMSIAKPNHSDFTPTLILVGTRLGLDKITPVYWEALKYSLQMPQSVGIAGGRPSSSHYF 320
Query: 313 VGVQEESAIYLDPHDVQPVINIGKDDLE----ADTSTYHSDVIRHIHLDSIDPSLAIGFY 368
+GVQE YLDPH +P + KD++E D + H+ +R +H+ +DPS+ I F
Sbjct: 321 IGVQESDFFYLDPHQTRPALPY-KDNVEDYTTEDIDSCHTRRLRRLHIKEMDPSMLIAFL 379
Query: 369 CRDKDDFDDF 378
RD++D++++
Sbjct: 380 IRDENDWNEW 389
>sp|Q6GPU1|ATG4A_XENLA Cysteine protease ATG4A OS=Xenopus laevis GN=atg4a PE=2 SV=1
Length = 397
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 163/320 (50%), Gaps = 21/320 (6%)
Query: 95 AEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKP 154
+ D SR+ +YRK F PIG + +SD GWGCMLR QM++AQAL+ LGR WR
Sbjct: 45 CDLQSDIVSRLWFTYRKKFSPIGGTGPSSDTGWGCMLRCGQMMLAQALVCQHLGRDWRWE 104
Query: 155 LQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQ 214
K EY +IL F D + +SIH + Q G G + G W GP + + + LA
Sbjct: 105 KHKNHPEEYQQILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFD 164
Query: 215 RAETGLGCQSLPMAIY------VVSGDEDGERGGAPVVC-IDDASRHCSVFSKGQ----- 262
+ +A+Y VV D P C + A+ H S +S+ +
Sbjct: 165 EWNS--------LAVYVSMDNTVVVEDIKTMCKYQPQSCSMAQAASHQSTWSRCRDTSGH 216
Query: 263 -ADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAI 321
+ W P+LL+VPL LG+ +NP Y+ + F PQSLG +GGKP + Y +G + I
Sbjct: 217 CSGWRPLLLVVPLRLGINHINPVYVDAFKACFKMPQSLGALGGKPNHAYYFIGFSGDEII 276
Query: 322 YLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCAR 381
YLDPH Q ++ + D + + + + ++DPS+A+GF+C+D++DF+++C
Sbjct: 277 YLDPHTTQTFVDTEEAGTVQDQTYHCQKGPNSMKVLNLDPSVALGFFCKDENDFNNWCEV 336
Query: 382 ASKLAEESNGAPLFTVTQTH 401
K + +F +T H
Sbjct: 337 IEKEILKHQSLRMFELTPKH 356
>sp|Q5ZIW7|ATG4A_CHICK Cysteine protease ATG4A OS=Gallus gallus GN=ATG4A PE=2 SV=1
Length = 380
Score = 175 bits (444), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 171/356 (48%), Gaps = 52/356 (14%)
Query: 70 IWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGC 129
+W+LG H + +D++ + D S+R+ +YR+ F PIG + +SD GWGC
Sbjct: 12 VWILGRQHHLNEDKS-----------KLLLDVSARLWFTYRRKFSPIGGTGPSSDAGWGC 60
Query: 130 MLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKA 189
MLR QM++AQAL+ LGR W+ K EY ILH F D + +SIH + Q G
Sbjct: 61 MLRCGQMMLAQALICRHLGRDWQWEKHKKQPEEYHRILHCFLDRKDCCYSIHQMAQMGVG 120
Query: 190 YGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCID 249
G + G W GP + + + LA + +A+YV + V I+
Sbjct: 121 EGKSIGEWFGPNTVAQVLKKLALFDEWNS--------LAVYVSMDN---------TVVIE 163
Query: 250 DASRHC------------------SVFSKGQ------ADWTPILLLVPLVLGLEKVNPRY 285
D + C S + + W P+LL++PL LG+ +NP Y
Sbjct: 164 DIKKMCRSPPQSSSTAHSSAHLHRSALGRNRNAAGLCTGWKPLLLIIPLRLGINHINPVY 223
Query: 286 IPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTST 345
I + F PQSLG +GGKP + Y +G IYLDPH Q ++ ++ D S
Sbjct: 224 IDAFKECFKMPQSLGALGGKPNNAYYFIGFLGNELIYLDPHTTQSFVDSEENGTVDDQSF 283
Query: 346 YHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTH 401
+ + + ++DPS+A+GF+C+++ DFD++C+ K + +F + Q H
Sbjct: 284 HCQQAPHRMKIMNLDPSVALGFFCKEECDFDNWCSLVQKEILKQQSLRMFELVQKH 339
>sp|Q86TL0|ATG4D_HUMAN Cysteine protease ATG4D OS=Homo sapiens GN=ATG4D PE=2 SV=1
Length = 474
Score = 172 bits (436), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 110/382 (28%), Positives = 177/382 (46%), Gaps = 66/382 (17%)
Query: 59 SRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGD 118
SRT S +S + +C + + E GD + F +DF SR+ ++YR+ F P+
Sbjct: 84 SRTSFSKISS----IHLCGRRYRFEGEGD------IQRFQRDFVSRLWLTYRRDFPPLPG 133
Query: 119 SKITSDVGWGCMLRSSQMLVAQALLFHRLGRPW--------------------------- 151
+TSD GWGCMLRS QM++AQ LL H L R W
Sbjct: 134 GCLTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWTWAEGMGLGPPELSGSASPSRYHGPAR 193
Query: 152 ----RKPLQKP---FDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMC 204
R P +R + +I+ F D +PF +H L++ G++ G AG W GP
Sbjct: 194 WMPPRWAQGAPELEQERRHRQIVSWFADHPRAPFGLHRLVELGQSSGKKAGDWYGP---- 249
Query: 205 RSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQAD 264
+A R + +YV + A +V D + A+
Sbjct: 250 ---SLVAHILRKAVESCSDVTRLVVYVSQDCTVYKADVARLVARPDPT----------AE 296
Query: 265 WTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLD 324
W +++LVP+ LG E +NP Y+P ++ LGI+GGKP S Y +G Q++ +YLD
Sbjct: 297 WKSVVILVPVRLGGETLNPVYVPCVKELLRCELCLGIMGGKPRHSLYFIGYQDDFLLYLD 356
Query: 325 PHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASK 384
PH QP +++ + D + ++H R + +DPS +GFY D+ +F+ C+ ++
Sbjct: 357 PHYCQPTVDVSQADFPLE--SFHCTSPRKMAFAKMDPSCTVGFYAGDRKEFETLCSELTR 414
Query: 385 LAEESNGA---PLFTVTQTHKK 403
+ S+ P+FT+ + H +
Sbjct: 415 VLSSSSATERYPMFTLAEGHAQ 436
>sp|A2QY50|ATG4_ASPNC Probable cysteine protease atg4 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=atg4 PE=3 SV=1
Length = 404
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/397 (30%), Positives = 181/397 (45%), Gaps = 72/397 (18%)
Query: 49 RRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAE------------ 96
+RI + + P S IW LG+ + +D + N E
Sbjct: 11 KRIVQYLWDPEPRNDEDPNSSIWCLGIEYHPDKDANTRETPDKNNTRENVMGTTNYRKPS 70
Query: 97 -------FNQDFSSRILISYRKGFDPI----GDSK-------------------ITSDVG 126
F DF SRI ++YR F PI GD K TSD G
Sbjct: 71 EHAWPESFLLDFESRIWMTYRSNFPPIPRVEGDDKSASMTLGVRLRSQLVDTQGFTSDTG 130
Query: 127 WGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQA 186
WGCM+RS Q L+A AL LGR WR+ + F+ E ++L LF D+ T+PFS+H ++
Sbjct: 131 WGCMIRSGQSLLANALSMLVLGRDWRRGAR--FEEE-SQLLSLFADTPTAPFSVHRFVKH 187
Query: 187 G-KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPV 245
G ++ G G W GP A + EAL+ C + + +YV + + +
Sbjct: 188 GAESCGKYPGEWFGPSATAKCIEALSS--------QCGNPTLKVYVSNDTSEVYQDK--- 236
Query: 246 VCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGK 305
D +R+ S + P L+L+ LG++ + P Y L+ FPQS+GI GG+
Sbjct: 237 --FMDIARNTS------GAFQPTLILLGTRLGIDNITPVYWDGLKAALQFPQSVGIAGGR 288
Query: 306 PGASTYIVGVQEESAIYLDPHDVQPVI---NIGKDDLEADTSTYHSDVIRHIHLDSIDPS 362
P AS Y VG Q YLDPH +P + G+ + + TYH+ +R IH+ +DPS
Sbjct: 289 PSASHYFVGAQGSHLFYLDPHYTRPALPDRQEGELYSKEEVDTYHTRRLRRIHVRDMDPS 348
Query: 363 LAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQ 399
+ IGF R+++D+ D+ R E G P+ V +
Sbjct: 349 MLIGFLIRNQEDWADWLKR----IEAVKGRPIIHVLK 381
>sp|A7F045|ATG4_SCLS1 Probable cysteine protease atg4 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=atg4 PE=3 SV=2
Length = 439
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 150/309 (48%), Gaps = 49/309 (15%)
Query: 97 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRS 133
F DF ++I ++YR F I S+ TSD GWGCM+RS
Sbjct: 103 FLDDFEAKIWLTYRSNFPAIAKSQDPKALSAMSLSVRLRSQLVDQGGFTSDTGWGCMIRS 162
Query: 134 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGL 192
Q L+A ALL R+GR WR+ +R+ IL LF D +P+SIH ++ G A G
Sbjct: 163 GQSLLANALLTLRMGREWRRGSSSNEERK---ILSLFADDPRAPYSIHKFVEHGASACGK 219
Query: 193 AAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDAS 252
G W GP A ARC +A T +S + +Y+ D +D
Sbjct: 220 HPGEWFGP-------SAAARCIQALTNSQVES-ELRVYITGDGSD---------VYEDT- 261
Query: 253 RHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYI 312
S+ +TP L+LV LGL+K+ P Y L+ + PQS+GI GG+P +S Y
Sbjct: 262 -FMSIAKPNSTKFTPTLILVGTRLGLDKITPVYWEALKSSLQMPQSVGIAGGRPSSSHYF 320
Query: 313 VGVQEESAIYLDPHDVQPVINIG---KDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYC 369
+GVQE YLDPH +P + +D D + H+ +R +H+ +DPS+ I F
Sbjct: 321 IGVQESDFFYLDPHQTRPALPFNDNVEDYTPEDIDSCHTRRLRRLHIKEMDPSMLIAFLI 380
Query: 370 RDKDDFDDF 378
RD++D+ D+
Sbjct: 381 RDENDWKDW 389
>sp|Q811C2|ATG4C_MOUSE Cysteine protease ATG4C OS=Mus musculus GN=Atg4c PE=2 SV=2
Length = 458
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 117/409 (28%), Positives = 173/409 (42%), Gaps = 80/409 (19%)
Query: 65 SSTSDIWLLGVCHKIAQDE-----------ALGDAAGNNGLAEFNQDFSSRILISYRKGF 113
S S + LLG C+ ++ A+ D + EF +DF SRI ++YR+ F
Sbjct: 36 SRNSPVLLLGKCYHFKYEDESKMLPARSGCAIEDHVIAGNVEEFRKDFISRIWLTYREEF 95
Query: 114 DPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKP----------------LQK 157
I S +T+D GWGC LR+ QML+AQ L+ H LGR W P K
Sbjct: 96 PQIEASALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALHIENADSDSWTSNTVK 155
Query: 158 PF----------DRE--------------------------YVEILHLFGDSETSPFSIH 181
F DRE + +I+ FGDS + F +H
Sbjct: 156 KFTASFEASLSGDRELRTPAVSLKETSGKCPDDHAVRNEAYHRKIISWFGDSPVAVFGLH 215
Query: 182 NLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERG 241
L++ GK G AG W GP + R G + IYV
Sbjct: 216 RLIEFGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQG-----LTIYVAQD------- 263
Query: 242 GAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGI 301
V D + + G A +++LVP+ LG E+ N Y+ ++ + +GI
Sbjct: 264 -CTVYNSDVIDKQTDSVTAGDARDKAVIILVPVRLGGERTNTDYLEFVKGVLSLEYCVGI 322
Query: 302 VGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDP 361
+GGKP S Y G Q++S IY+DPH Q +++ D + T+H + + +DP
Sbjct: 323 IGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDFPLE--TFHCPSPKKMSFRKMDP 380
Query: 362 SLAIGFYCRDKDDFDDFCARASKLAEESNGA--PLFTVTQTHKKPVNHS 408
S IGFYCR+ DF+ +K+ + S+ PLFT H K + +
Sbjct: 381 SCTIGFYCRNVQDFERASEEITKMLKISSKEKYPLFTFVNGHSKDFDFT 429
>sp|A1CJ08|ATG4_ASPCL Probable cysteine protease atg4 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=atg4 PE=3 SV=1
Length = 400
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 150/313 (47%), Gaps = 49/313 (15%)
Query: 96 EFNQDFSSRILISYRKGFDPIG----------------------DSK-ITSDVGWGCMLR 132
EF D SRI I+YR F PI DS+ TSD GWGCM+R
Sbjct: 75 EFLDDVESRIWITYRSNFTPIPKPPNQEANPAMTLTVHLRSQLMDSQGFTSDTGWGCMIR 134
Query: 133 SSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY-G 191
S Q L+A A+L LGR WR+ + + ++LH F D +PFSIH +Q G +
Sbjct: 135 SGQSLLANAMLILLLGRDWRRGTEAGKE---AQLLHQFADHPEAPFSIHRFVQHGAEFCN 191
Query: 192 LAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDA 251
G W GP A R +AL A+ G S + +Y+ D + D
Sbjct: 192 KYPGEWFGPSATARCIQALV----AQQG----SSELRVYITDDTAD--------IYEDKF 235
Query: 252 SRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTY 311
+R + D+ P L+LV LG++ V P Y L+ PQS+GI GG+P AS Y
Sbjct: 236 AR---IAQAEHGDFIPTLILVGTRLGIDHVTPAYWDALKEALQLPQSVGIAGGRPSASHY 292
Query: 312 IVGVQEESAIYLDPHDVQPV---INIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFY 368
+GV + YLDPH +P ++ + +TYH+ +R IH+ +DPS+ IGF
Sbjct: 293 FIGVHGQYLFYLDPHHTRPASLHQDVNDTLTHEEVNTYHTRRLRRIHIKDMDPSMLIGFI 352
Query: 369 CRDKDDFDDFCAR 381
R ++D+ D+ R
Sbjct: 353 IRSREDWTDWKTR 365
>sp|Q2U5B0|ATG4_ASPOR Probable cysteine protease atg4 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=atg4 PE=3 SV=2
Length = 407
Score = 166 bits (419), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 169/386 (43%), Gaps = 71/386 (18%)
Query: 49 RRIHERVLGPSRTGISSSTSDIWLLGVCH-----KIA-----------QDE------ALG 86
+RI + + P + IW LGV + KI QDE +
Sbjct: 11 KRIVQYIWDPEPRNDEEPDASIWCLGVEYAPQPQKITANTTPGKLGNYQDELEAGTSKID 70
Query: 87 DAAGNNGLAEFNQDFSSRILISYRKGFDPI-----------------------GDSKITS 123
D + F DF S+I ++YR F PI TS
Sbjct: 71 DVTAHGWPEAFVSDFESKIWMTYRSDFPPIPRLDNDEANHPMTLTVRIRTQLMDPQGFTS 130
Query: 124 DVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNL 183
D GWGCM+RS Q L+A A+L LGR WR+ + E +L LF D +P SIH
Sbjct: 131 DTGWGCMIRSGQSLLANAMLTLCLGRDWRRGDKA---EEEARLLSLFADHPDAPLSIHRF 187
Query: 184 LQAG-KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGG 242
++ G ++ G G W GP A R EAL+ C ++ +YV + D
Sbjct: 188 VKYGAESCGKHPGEWFGPSATARCIEALS--------AQCGNIAPRVYVTNDTSD----- 234
Query: 243 APVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIV 302
V D R V G P L+L+ LG++ V P Y L+ PQS+GI
Sbjct: 235 ---VYEDSFLR---VARSGSGSIQPTLILLGTRLGIDNVTPVYWDGLKAVLQLPQSVGIA 288
Query: 303 GGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDL---EADTSTYHSDVIRHIHLDSI 359
GG+P AS Y +G Q YLDPH +P + D + + STYH+ +R IH+ +
Sbjct: 289 GGRPSASHYFIGTQGPHFFYLDPHTTRPAVPYSIDGRLLSKTEISTYHTRRLRRIHIQDM 348
Query: 360 DPSLAIGFYCRDKDDFDDFCARASKL 385
DPS+ IGF R++DD++D+ R +
Sbjct: 349 DPSMLIGFLVRNEDDWEDWKGRVGSV 374
>sp|Q96DT6|ATG4C_HUMAN Cysteine protease ATG4C OS=Homo sapiens GN=ATG4C PE=2 SV=1
Length = 458
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 119/421 (28%), Positives = 176/421 (41%), Gaps = 87/421 (20%)
Query: 65 SSTSDIWLLGVCHKIA---QDEALGDAAGNN--------GLAEFNQDFSSRILISYRKGF 113
S S + LLG C+ +D+ L +G + EF +DF SRI ++YR+ F
Sbjct: 36 SRNSPVLLLGKCYHFKYEDEDKTLPAESGCTIEDHVIAGNVEEFRKDFISRIWLTYREEF 95
Query: 114 DPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKP----------------LQK 157
I S +T+D GWGC LR+ QML+AQ L+ H LGR W P K
Sbjct: 96 PQIEGSALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALNIENSDSESWTSHTVK 155
Query: 158 PF----------DREYV--------------------------EILHLFGDSETSPFSIH 181
F +RE+ +I+ FGDS + F +H
Sbjct: 156 KFTASFEASLSGEREFKTPTISLKETIGKYSDDHEMRNEVYHRKIISWFGDSPLALFGLH 215
Query: 182 NLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERG 241
L++ GK G AG W GP + R G + IYV
Sbjct: 216 QLIEYGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQG-----ITIYVAQD------- 263
Query: 242 GAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGI 301
V D + + + AD +++LVP+ LG E+ N Y+ ++ + +GI
Sbjct: 264 -CTVYNSDVIDKQSASMTSDNADDKAVIILVPVRLGGERTNTDYLEFVKGILSLEYCVGI 322
Query: 302 VGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDP 361
+GGKP S Y G Q++S IY+DPH Q +++ D + T+H + + +DP
Sbjct: 323 IGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDFPLE--TFHCPSPKKMSFRKMDP 380
Query: 362 SLAIGFYCRDKDDFDDFCARASKLAEESNGA--PLFTVTQTHKK-------PVNHSDVLG 412
S IGFYCR+ DF +K+ + S+ PLFT H + N D+
Sbjct: 381 SCTIGFYCRNVQDFKRASEEITKMLKFSSKEKYPLFTFVNGHSRDYDFTSTTTNEEDLFS 440
Query: 413 E 413
E
Sbjct: 441 E 441
>sp|Q2HH40|ATG4_CHAGB Probable cysteine protease ATG4 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=ATG4 PE=3 SV=2
Length = 448
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 154/310 (49%), Gaps = 56/310 (18%)
Query: 97 FNQDFSSRILISYRKGFDPI----------------------GD-SKITSDVGWGCMLRS 133
F DF SRI ++YR GF+PI GD + +SD GWGCM+RS
Sbjct: 113 FLDDFGSRIWMTYRTGFEPIPRSTDPKAASALSFTMRLKTSFGDQTGFSSDTGWGCMIRS 172
Query: 134 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGK-AYGL 192
Q L+A ALL +LGR WR+ +R I+ LF D +P+S+ N ++ G A G
Sbjct: 173 GQSLLANALLISQLGRDWRRTTDPGAERN---IVALFADDARAPYSLQNFVKHGAIACGK 229
Query: 193 AAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDAS 252
G W GP A R +ALA + + IY G P V D
Sbjct: 230 HPGEWFGPSATARCIQALADQHESS---------LRIYST--------GDLPDVYED--- 269
Query: 253 RHCSVFSKGQAD---WTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGAS 309
S + + D + P L+LV LG++K+NP Y L T QS+GI GG+P +S
Sbjct: 270 ---SFLATARPDGETFHPTLILVCTRLGIDKINPVYEEALISTLQMEQSIGIAGGRPSSS 326
Query: 310 TYIVGVQEESAIYLDPHDVQPVINIGKDDLE---ADTSTYHSDVIRHIHLDSIDPSLAIG 366
Y VGVQ + YLDPH +P + ++ L + + H+ +R++H++ +DPS+ IG
Sbjct: 327 HYFVGVQRQWLFYLDPHHPRPALQYRENPLNYTLEELDSCHTRRLRYLHVEDMDPSMLIG 386
Query: 367 FYCRDKDDFD 376
F +D+DD+D
Sbjct: 387 FLIQDEDDWD 396
>sp|A7KAI3|ATG4_PICAN Probable cysteine protease ATG4 OS=Pichia angusta GN=ATG4 PE=3 SV=1
Length = 509
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 126/404 (31%), Positives = 187/404 (46%), Gaps = 80/404 (19%)
Query: 72 LLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSK----------- 120
L + HK D+A A + EF +D SRI ++YR GF I ++
Sbjct: 51 LRTLFHKFKPDQAADTEA--SWPREFLRDVHSRIWLTYRSGFPLIKRAEDGPSPLSFGSL 108
Query: 121 -------------ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEIL 167
T+D GWGCM+R+SQ L+A +LL RLGR WR + + + EI+
Sbjct: 109 IRGTVDLATVTKGFTTDAGWGCMIRTSQSLLANSLLQLRLGRGWRYDQTRECAK-HAEIV 167
Query: 168 HLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLP 226
F D T+PFSIHN ++ G G G W GP A RS + L +TGL
Sbjct: 168 SWFVDIPTAPFSIHNFVEQGANCAGKKPGEWFGPSAAARSIQVLCEANYDKTGLKV---- 223
Query: 227 MAIYVVSGD--EDGERGGAPVVCIDDASRHCSVFSKGQ--ADWTPILLLVPLVLGLEKVN 282
+ SGD ED +F Q A+ P+L+L + LG++ VN
Sbjct: 224 --YFTASGDIYED------------------ELFELAQQGAELRPVLILAGIRLGVKNVN 263
Query: 283 PRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKD----- 337
P Y L+ T +PQS+GI GG+P +S Y G Q + YLDPH Q + I +
Sbjct: 264 PLYWDFLKKTLGWPQSVGIAGGRPSSSHYFFGFQGDYLFYLDPHVPQKALLIASEAPHES 323
Query: 338 -------DLEA--DTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEE 388
++E+ D + H++ IR +HLD +DPS+ +G ++ +D A +
Sbjct: 324 PDPNHYVEVESGLDLDSVHTNKIRKLHLDQMDPSMLVGLLVENRASYD---ALKHSINSH 380
Query: 389 SNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDD--SLGVMSMND 430
G+ V + +PV + +GG+ E + LGV+SMN+
Sbjct: 381 DQGSRFLNVYDS--RPVLAAK---SSGGLEESEFVDLGVLSMNE 419
>sp|Q5XH30|ATG4C_XENLA Cysteine protease ATG4C OS=Xenopus laevis GN=atg4c PE=2 SV=1
Length = 450
Score = 161 bits (408), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 172/403 (42%), Gaps = 95/403 (23%)
Query: 67 TSDIWLLGVCHKIAQDEA--LGDAAGNNG----------LAEFNQDFSSRILISYRKGFD 114
S ++LLG C+ +++ D N+G + EF +DF SRI ++YRK F
Sbjct: 38 NSPVFLLGKCYHFKYEDSGVTADDCSNSGSDSKEDLSGNVDEFRKDFISRIWLTYRKEFP 97
Query: 115 PIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPW----------------------- 151
I S T+D GWGC LR+ QML+AQ LL H LGR W
Sbjct: 98 QIESSSWTTDCGWGCTLRTGQMLLAQGLLVHFLGRDWTWTEALDIFCSESDFWTANTARK 157
Query: 152 -------------------RKPLQKPFDREYVEILH-----LFGDSETSPFSIHNLLQAG 187
++PLQ + Y E LH F D + F +H L++ G
Sbjct: 158 LDPSLEKSSPENEEYVSLGKQPLQNSEKKRYSEDLHRKIISWFADYPLAYFGLHQLVKLG 217
Query: 188 KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVC 247
K G AG W GP + L R E+ D E G +
Sbjct: 218 KNSGKVAGDWYGPAVVSH----LLRKAIEESS-----------------DPELQGITIYV 256
Query: 248 IDDASRHCSVFSK-------GQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLG 300
D C++++ + + +++LVP+ LG E+ N Y ++ + +G
Sbjct: 257 AQD----CTIYNADVYDLQCNKGNEKAVVILVPVRLGGERTNMEYFEYVKGILSLEFCIG 312
Query: 301 IVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSID 360
I+GGKP S Y VG Q++S IY+DPH Q +++ + + ++H + + +D
Sbjct: 313 IIGGKPKQSYYFVGFQDDSLIYMDPHYCQSFVDVSIKNFPLE--SFHCPSPKKMSFKKMD 370
Query: 361 PSLAIGFYCRDKDDFDDFCARASKLAEES--NGAPLFTVTQTH 401
PS +GFYCR+ +F+ +K+ + S PLFT H
Sbjct: 371 PSCTVGFYCRNAREFEKAAEELTKVLKSSTKQNYPLFTFVNGH 413
>sp|Q7S3X7|ATG4_NEUCR Probable cysteine protease atg-4 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=atg-4 PE=3 SV=1
Length = 506
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/405 (32%), Positives = 182/405 (44%), Gaps = 87/405 (21%)
Query: 1 MKGFREKAGASKCFSKSTPDTPNRSLASVGSELGSSETVKRLVTAGSMRRIHERVLGPSR 60
G R A A+ C S ++ S A GS+LGS +TV VT+G ++ L
Sbjct: 112 FNGVRTTATAT-CLSDTS-----MSAAPTGSQLGSFDTVPDSVTSG-----YDSALAYEE 160
Query: 61 TGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGF------- 113
G QD A F DF SRI ++YR F
Sbjct: 161 PG------------------QDGGWPPA--------FLDDFESRIWMTYRTDFALIPRSS 194
Query: 114 DPIGDSKIT----------------SDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQK 157
DP S ++ SD GWGCM+RS Q L+A A+L RLGR WR+
Sbjct: 195 DPQASSALSFAMRIKTTFSDLTGFSSDTGWGCMIRSGQSLLANAILIARLGREWRRGTD- 253
Query: 158 PFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALARCQRA 216
D E +I+ LF D +P+S+HN ++ G A G G W GP A R +ALA
Sbjct: 254 -LDAE-KDIIALFADDPRAPYSLHNFVKYGATACGKYPGEWFGPSATARCIQALA--DEK 309
Query: 217 ETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVL 276
++GL S G P V D +V + + P L+LV L
Sbjct: 310 QSGLRVYST---------------GDLPDVYEDS---FMAVANPDGRGFQPTLILVCTRL 351
Query: 277 GLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGK 336
G++K+N Y L T PQS+GI GG+P +S Y VGVQ + YLDPH +P + +
Sbjct: 352 GIDKINQVYEEALISTLQLPQSIGIAGGRPSSSHYFVGVQGQRLFYLDPHHPRPALPYRE 411
Query: 337 DD---LEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDF 378
D + T H+ +R +H+ +DPS+ IGF +D+DD+D +
Sbjct: 412 DPRGYTAEELDTCHTRRLRQLHIGDMDPSMLIGFLIKDEDDWDTW 456
>sp|A7KAL5|ATG4_PENCW Probable cysteine protease atg4 OS=Penicillium chrysogenum (strain
ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg4 PE=3
SV=1
Length = 401
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 171/380 (45%), Gaps = 75/380 (19%)
Query: 70 IWLLGVCHKIAQDEALGDAAGNNGLAE-----------------FNQDFSSRILISYRKG 112
IW LG + A + D A NN + F DF SRI I+YR
Sbjct: 29 IWCLG--REYAPSQPPSDPASNNPRSPSRQPNASTLNDTTWPKAFLSDFGSRIWITYRSN 86
Query: 113 FDPIGDSK-----------------------ITSDVGWGCMLRSSQMLVAQALLFHRLGR 149
F PI +K TSD GWGCM+RS Q L+A LGR
Sbjct: 87 FTPIPRTKTPEATSSMTLGVRLRSQLMDPQGFTSDTGWGCMIRSGQSLLANTFSVLLLGR 146
Query: 150 PWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWE 208
WR+ + E +++ +F D +PFSIH + G ++ G G W GP
Sbjct: 147 DWRRGEKV---EEESKLISMFADHPEAPFSIHRFVNRGAESCGKYPGEWFGP-------S 196
Query: 209 ALARCQRAETGLGCQS-LP-MAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWT 266
A A+C + L QS +P + +Y+ + D +D H + G+
Sbjct: 197 ATAKCIQL---LSTQSEVPQLRVYLTNDTSD---------VYEDKFAHVAHDESGRIQ-- 242
Query: 267 PILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPH 326
P L+L+ LG++ V P Y LR T+PQS+GI GG+P AS Y VG Q+ +LDPH
Sbjct: 243 PTLILIGTRLGIDNVTPAYWDGLRAALTYPQSVGIAGGRPSASHYFVGAQDCHLFFLDPH 302
Query: 327 DVQPVINIGKDDL--EADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASK 384
+P D L + + +Y++ +R IH+ +DPS+ IGF +D+DD+ D+ K
Sbjct: 303 TTRPATLYRPDGLYTQEELDSYYTSRLRRIHIKDMDPSMLIGFLVKDEDDWADW----KK 358
Query: 385 LAEESNGAPLFTVTQTHKKP 404
+ G P+ + + +P
Sbjct: 359 RIRSTPGQPIVHIFPSQHQP 378
>sp|Q0U199|ATG4_PHANO Probable cysteine protease ATG4 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=ATG4 PE=3 SV=1
Length = 467
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/354 (32%), Positives = 158/354 (44%), Gaps = 87/354 (24%)
Query: 92 NGLAEFNQDFSSRILISYRKGFDPIGDSK---------------------ITSDVGWGCM 130
N + F DF SR+ ++YR GF PI S+ TSD G+GCM
Sbjct: 91 NWPSAFLDDFESRVWMTYRSGFSPIQKSQDPKATSAMSFRVRMQNLASPGFTSDAGFGCM 150
Query: 131 LRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY 190
+RS Q ++A AL RLGR WR + D+++ EIL LF D +PFSIH ++ G A
Sbjct: 151 IRSGQCILANALQILRLGRDWRW-QENHADKDHAEILSLFADDPQAPFSIHRFVEHGAAV 209
Query: 191 -GLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCID 249
G G W GP A R + LA R E GL +YV SGD GA V +
Sbjct: 210 CGKYPGEWFGPSAAARCIQDLANKHR-EAGL-------KVYV-SGD------GADVY--E 252
Query: 250 DASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGAS 309
D + +V G W P L+LV LG++K+ P Y L+ + PQS+GI GG+P AS
Sbjct: 253 DKLKQVAVDEDGL--WQPTLILVGTRLGIDKITPVYWEALKASLQIPQSIGIAGGRPSAS 310
Query: 310 TYIVGVQEESAIYLDPHDVQPVINIGKDDLEA---------------------------- 341
Y VGVQ + YLDPH +P++ L A
Sbjct: 311 HYFVGVQGNNFYYLDPHSTRPLLPFHPPSLAAATSDTPNLTASTTSVSSTTSSTTIVPPA 370
Query: 342 -----------------DTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDF 378
D ST H+ IR + + +DPS+ + F + D+ D+
Sbjct: 371 DSIPAPSDPRQSLYPPSDLSTCHTRRIRRLQIREMDPSMLLAFLVTSEADYQDW 424
>sp|Q1E5M9|ATG4_COCIM Probable cysteine protease ATG4 OS=Coccidioides immitis (strain RS)
GN=ATG4 PE=3 SV=1
Length = 432
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 138/297 (46%), Gaps = 50/297 (16%)
Query: 97 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRS 133
F DF S+ +YR F I S+ T+D GWGCM+RS
Sbjct: 105 FLDDFESKFWFTYRSNFPAIPKSRDPDTPLALTLSVRLRSQFLDTHGFTADTGWGCMIRS 164
Query: 134 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGL 192
Q L+A AL LGR WR+ + +E E+L LF D+ +PFSIH + G A G
Sbjct: 165 GQSLLANALSILNLGRDWRRGSKI---KEECELLSLFADNPQAPFSIHRFVDYGASACGK 221
Query: 193 AAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDAS 252
G W GP A R EAL+ C+ + +YV+S D + D
Sbjct: 222 HPGEWFGPSATARCIEALSN--------ECKHTDLNVYVMSDGSDVHEDQFRQIAGPDGI 273
Query: 253 RHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYI 312
R P L+L+ + LG+E V P Y LR +PQS+GI GG+P +S Y
Sbjct: 274 R-------------PTLILLGVRLGIESVTPVYWEALRAIIRYPQSVGIAGGRPSSSLYF 320
Query: 313 VGVQEESAIYLDPHDVQPVINIGKDDL--EADTSTYHSDVIRHIHLDSIDPSLAIGF 367
+GVQ YLDPH +P ++ D + TYH+ +R +H+ +DPS+ IGF
Sbjct: 321 IGVQGPYFFYLDPHHTRPAVSWNPDSTLSPENLDTYHTRRLRRLHIREMDPSMLIGF 377
>sp|Q86ZL5|ATG4_PODAS Probable cysteine protease ATG4 OS=Podospora anserina GN=ATG4 PE=3
SV=1
Length = 500
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 147/310 (47%), Gaps = 64/310 (20%)
Query: 97 FNQDFSSRILISYRKGFDPI----------------------GD-SKITSDVGWGCMLRS 133
F DF SRI ++YR GF+ I GD + +SD GWGCM+RS
Sbjct: 173 FLDDFESRIWMTYRTGFEVIPRSTDPKAAAALSFTMRFKTSFGDQTGFSSDTGWGCMIRS 232
Query: 134 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY-GL 192
Q L+A A+L R GR WR+ +RE I+ LF D +P+SI N + G A G
Sbjct: 233 GQSLLANAMLISRAGRAWRRTTNPDIERE---IVCLFADDPRAPYSIQNFVNHGAAACGK 289
Query: 193 AAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAI---YVVSGDEDGERGGAPVVCID 249
G W GP A ARC + + LP ++ + + DG
Sbjct: 290 YPGEWFGP-------SATARCIHSLRVYLTRDLPEVYEDNFMSTANPDGNH--------- 333
Query: 250 DASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGAS 309
+ P L+LV LG++K+NP Y L T PQ++GI GG+P +S
Sbjct: 334 ---------------FHPTLILVSTRLGIDKINPIYHEALISTLQLPQAIGIAGGRPSSS 378
Query: 310 TYIVGVQEESAIYLDPHDVQPVINIGK---DDLEADTSTYHSDVIRHIHLDSIDPSLAIG 366
Y +G Q + YLDPH +P + + D + + H+ +RH+H++ +DPS+ IG
Sbjct: 379 HYFIGAQGQWLFYLDPHHPRPALPYRENPNDYTIEELDSCHTRRLRHLHVEDMDPSMLIG 438
Query: 367 FYCRDKDDFD 376
F +D+DD+D
Sbjct: 439 FLIKDEDDWD 448
>sp|Q4U3V5|ATG4_CRYPA Probable cysteine protease ATG4 OS=Cryphonectria parasitica GN=ATG4
PE=2 SV=1
Length = 459
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 152/332 (45%), Gaps = 60/332 (18%)
Query: 79 IAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSK------------------ 120
+A DE L DA F DF SR+ ++YR F+PI S
Sbjct: 109 LAYDELLEDAGWP---IAFLDDFESRVWMTYRSEFEPISKSNDPRASAALSFAMRLRTLA 165
Query: 121 ----ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETS 176
+SD GWGCM+RS Q L+A L+ +LGR WR+ R+ EIL F D +
Sbjct: 166 DQGGFSSDTGWGCMIRSGQSLLANTLVICQLGRDWRRGKAA---RQEREILARFADDPRA 222
Query: 177 PFSIHNLLQAGK-AYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGD 235
P+S+HN ++ G A G G W GP A R +ALA + + +Y
Sbjct: 223 PYSLHNFVRHGAVACGKFPGEWFGPSATARCIQALANSNESS---------LRVYST--- 270
Query: 236 EDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTF 295
G P V D +V + P L+LV LG++K+N Y L T
Sbjct: 271 -----GDLPDVYEDS---FMAVAKPDGETFHPTLILVGTRLGIDKINQVYWEALTATLQM 322
Query: 296 PQSLGIVGGKPGASTYIVGVQEES--------AIYLDPHDVQPVINIGKD---DLEADTS 344
PQS+GI GG+P AS Y +G Q YLDPH +P + +D D +
Sbjct: 323 PQSVGIAGGRPSASHYFIGAQRSGDAYEPGSYLFYLDPHCTRPALPFHEDVDQYTSDDIN 382
Query: 345 TYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFD 376
T H+ +R +H+ +DPS+ IGF +D+DD+D
Sbjct: 383 TCHTRRLRRLHVRDMDPSMLIGFLIKDEDDWD 414
>sp|Q6CH28|ATG4_YARLI Probable cysteine protease ATG4 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=ATG4 PE=3 SV=1
Length = 545
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 167/393 (42%), Gaps = 98/393 (24%)
Query: 96 EFNQDFSSRILISYRKGF--------------------------DPIGDSKITSDVGWGC 129
+F D SRI +SYR GF DP G TSDVGWGC
Sbjct: 64 DFLADVQSRIWLSYRTGFPLIPKSDGSGTIHLGKLKNMIRGGGFDPRG---YTSDVGWGC 120
Query: 130 MLRSSQMLVAQALLFHRLGRPWR----------------------------KPLQKPFDR 161
M+R+SQ L+A ALLF LGR WR K +
Sbjct: 121 MIRTSQSLLANALLFRHLGRGWRWNKGDDFVYLSEGNTESRGGESRNGGANKEQETAVSE 180
Query: 162 EYV----EILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALARCQRA 216
E I+ F DS SPFSIH ++ G KA AG W GP A S AL
Sbjct: 181 ETAVSEETIISWFLDSPDSPFSIHKFVRHGEKACSTPAGDWFGPSAAGSSIYAL------ 234
Query: 217 ETGLGCQSLP---MAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 273
C P + +Y +G GG V D+ + G P+L+L
Sbjct: 235 -----CNEFPDSGLKVYY-----NGNGGGD--VYEDE------LLETG----FPLLVLCG 272
Query: 274 LVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVIN 333
L LG++ VNP Y +LR + PQS+GI GG+P S Y G Q E YLDPH +P +
Sbjct: 273 LRLGIDNVNPIYWDSLRQMLSLPQSVGIAGGRPFTSHYFFGFQGEQLFYLDPHQPKPAVK 332
Query: 334 IGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAP 393
+ DT+++HS I +HL +DPS+ +GFY + D++ F + E+++
Sbjct: 333 T----TDKDTTSFHSSRIWKLHLKEMDPSMLVGFYITSEADWETFKGSLTASKEKTSSQI 388
Query: 394 LFTVTQTHKKP-VNHSDVLGETGGVPEDDSLGV 425
+ H P + D GG +DD + V
Sbjct: 389 VHIHPSRHNIPSFDEEDEYVSIGGASDDDFVDV 421
>sp|Q5B7L0|ATG4_EMENI Cysteine protease atg4 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=atg4 PE=3
SV=2
Length = 402
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 178/390 (45%), Gaps = 68/390 (17%)
Query: 49 RRIHERVLGPSRTGISSSTSDIWLLGV-----CHKIAQDEALGDAAGNN--------GLA 95
+RI + + P S IW LG C + DE+ G G
Sbjct: 11 KRIIQYIWDPEPKNDEEPGSPIWCLGTRYPPQCVEETADESRNPDHGQQQNTNTSAPGWP 70
Query: 96 E-FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCML 131
E F DF S+I ++YR F PI TSD GWGCM+
Sbjct: 71 EAFLLDFESKIWMTYRSNFPPIPKDAGQEGSLSLTLGVRLRSQLIDAQGFTSDTGWGCMI 130
Query: 132 RSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY- 190
RS Q L+A ++ LGR WR+ + E ++L LF DS +PFSIH+ ++ G +
Sbjct: 131 RSGQSLLANSMAILLLGRDWRRGERL---EEEGKLLSLFADSPHAPFSIHSFVKHGADFC 187
Query: 191 GLAAGSWVGPYAMCRSWEALA-RCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCID 249
G G W GP A R + LA R ++ + +Y+ + D + V D
Sbjct: 188 GKHPGEWFGPTATARCIQGLAARYDQSN---------LQVYIADDNSDVHQDKFMSVSRD 238
Query: 250 DASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGAS 309
+ KG P L+L+ L LG++++ Y L+ PQS+GI GG+P AS
Sbjct: 239 E---------KGTV--RPTLILLGLRLGIDRITAVYWNGLKAVLQLPQSVGIAGGRPSAS 287
Query: 310 TYIVGVQEESAIYLDPHDVQPVINIGKDD--LEADTSTYHSDVIRHIHLDSIDPSLAIGF 367
Y V VQ YLDPH+ +P + + E + +TYH+ +R +++ +DPS+ IGF
Sbjct: 288 HYFVAVQGSHFFYLDPHNTRPALRYSESGTYTEDEVNTYHTRRLRRLNIQDMDPSMLIGF 347
Query: 368 YCRDKDDFDDFCARASKLAEESNGAPLFTV 397
RD+DD++D+ AR L G P+ T+
Sbjct: 348 LIRDEDDWEDWKARIMSL----EGKPIITI 373
>sp|Q68EP9|ATG4C_XENTR Cysteine protease ATG4C OS=Xenopus tropicalis GN=atg4c PE=2 SV=1
Length = 450
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/403 (27%), Positives = 172/403 (42%), Gaps = 95/403 (23%)
Query: 67 TSDIWLLGVCHKIAQDEA--LGDAAGNNG----------LAEFNQDFSSRILISYRKGFD 114
S ++LLG C+ +++ D N+G + EF +DF SRI ++YR+ F
Sbjct: 38 NSPVFLLGKCYHFKYEDSSVTSDGGSNSGSESKEDLSGNVDEFRKDFISRIWLTYREEFP 97
Query: 115 PIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPW----------------------- 151
I S T+D GWGC LR+ QML+AQ L+ H LGR W
Sbjct: 98 QIETSSWTTDCGWGCTLRTGQMLLAQGLIVHFLGRDWTWTEALDIFSSESEFWTANTARK 157
Query: 152 -------------------RKPLQ---KPFDRE--YVEILHLFGDSETSPFSIHNLLQAG 187
++PL K + E + +I+ F D + F +H L++ G
Sbjct: 158 LTPSLETSFSENNECVSSNKQPLHNCDKKSNSEDFHQKIISWFADYPLAYFGLHQLVKLG 217
Query: 188 KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVC 247
K G AG W GP + L R E+ D E G +
Sbjct: 218 KNSGKVAGDWYGPAVVSH----LLRKAIEESS-----------------DPELQGITIYV 256
Query: 248 IDDASRHCSVFSKGQADW-------TPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLG 300
D C+++S D +++LVP+ LG E+ N Y ++ + +G
Sbjct: 257 AQD----CTIYSADVYDLQCNKGTEKAVVILVPVRLGGERTNMEYFEFVKGILSLEFCIG 312
Query: 301 IVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSID 360
I+GGKP S Y VG Q++S IY+DPH Q +++ + + ++H + + +D
Sbjct: 313 IIGGKPKQSYYFVGFQDDSLIYMDPHYCQSFVDVSVKNFPLE--SFHCPSPKKMSFKKMD 370
Query: 361 PSLAIGFYCRDKDDFDDFCARASKLAEES--NGAPLFTVTQTH 401
PS IGFYCR+ +F+ +K+ + S PLFT H
Sbjct: 371 PSCTIGFYCRNAREFEKAAEELTKVLKSSTKQNYPLFTFVNGH 413
>sp|Q523C3|ATG4_MAGO7 Cysteine protease ATG4 OS=Magnaporthe oryzae (strain 70-15 / ATCC
MYA-4617 / FGSC 8958) GN=ATG4 PE=3 SV=2
Length = 491
Score = 152 bits (384), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 143/312 (45%), Gaps = 56/312 (17%)
Query: 97 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRS 133
F DF SRI ++YR GF+PI S T+D GWGCM+R+
Sbjct: 151 FLNDFESRIWMTYRSGFEPIPRSTDPTASSRMSFAMRLKTMADQQAGFTTDSGWGCMIRT 210
Query: 134 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY-GL 192
Q L+A +LL RLGR WR+ Q P E ++L LF D +P+SIHN + G A G
Sbjct: 211 GQSLLANSLLTCRLGRSWRR-GQAP--DEERKLLSLFADDPRAPYSIHNFVAHGAAKCGK 267
Query: 193 AAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDAS 252
G W GP A R ALA +Y G P V D
Sbjct: 268 YPGEWFGPSATARCIHALANATENS---------FRVYST--------GDLPDVYEDS-- 308
Query: 253 RHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYI 312
V + P L+L+ LG++K+N Y +L T PQS+GI GG+P +S Y
Sbjct: 309 -FMEVAKPDGKTFHPTLILISTRLGIDKINQVYWESLTATLQLPQSVGIAGGRPSSSHYF 367
Query: 313 VGVQEESA------IYLDPHDVQPVINIGKDD---LEADTSTYHSDVIRHIHLDSIDPSL 363
VG Q YLDPH +P + +D +D + H+ +R +H+ +DPS+
Sbjct: 368 VGAQRSDEDQGSYLFYLDPHHTRPALPFHEDPQLYTPSDVDSCHTRRLRRLHIREMDPSM 427
Query: 364 AIGFYCRDKDDF 375
IGF D++++
Sbjct: 428 LIGFLILDEENW 439
>sp|Q68FJ9|ATG4D_XENLA Cysteine protease ATG4D OS=Xenopus laevis GN=atg4d PE=2 SV=1
Length = 469
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 161/356 (45%), Gaps = 63/356 (17%)
Query: 91 NNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRP 150
++ + F +DF SR+ ++YR+ F + + +T+D GWGCM+RS QML+AQ LL H L R
Sbjct: 93 DDEIERFQKDFVSRVWLTYRRDFPALEGTALTTDCGWGCMIRSGQMLLAQGLLLHLLSRE 152
Query: 151 W--RKPLQKPF----------------------------------------DREYVEILH 168
W + L + F D+ + I+
Sbjct: 153 WTWSEALYRHFVEMEPIRSSSPPSMPLSSLATGHSAGDYQPHTQCSGAPHGDQVHRNIMR 212
Query: 169 LFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMA 228
F D SPF +H L+ G +G AG W GP +A + + ++
Sbjct: 213 WFSDHPGSPFGLHQLVTLGSIFGKKAGDWYGP-------SIVAHIIKKAIETSSEVPELS 265
Query: 229 IYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPT 288
+YV S D + + D + G+A +++LVP+ LG E NP Y
Sbjct: 266 VYV-SQDCTVYKADIEQLFAGDVPHAETSRGAGKA----VIILVPVRLGGETFNPVYKHC 320
Query: 289 LRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHS 348
L+ P LGI+GGKP S Y +G Q+ +YLDPH QP I+ K+D + ++H
Sbjct: 321 LKEFLRMPSCLGIIGGKPKHSLYFIGYQDNYLLYLDPHYCQPYIDTSKNDFPLE--SFHC 378
Query: 349 DVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKL-----AEESNGAPLFTVTQ 399
+ R I + +DPS FY ++ +DF C K+ AEE P+F++++
Sbjct: 379 NSPRKISITRMDPSCTFAFYAKNSEDFGKLCDHLMKVLHSPRAEEK--YPIFSISE 432
>sp|Q6BYP8|ATG4_DEBHA Probable cysteine protease ATG4 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=ATG4 PE=3 SV=2
Length = 492
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 156/343 (45%), Gaps = 79/343 (23%)
Query: 87 DAAGNNGLAEFNQDFSSRILISYRKGFDPIG----------------------------- 117
D + ++G+ E QD S+I ++YR GF+PI
Sbjct: 77 DISVDDGVIE--QDIYSKIWLTYRTGFEPIAKCLDGPQPLSFVQSMVFNRNPISSTFNNF 134
Query: 118 -----DSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPW-----RKPLQKPFDREYVEIL 167
+ T+DVGWGCM+R+SQ L+A LGR + R P + EI+
Sbjct: 135 HGLLDNDNFTTDVGWGCMIRTSQALLANTYQLLFLGRGFSYGRDRSP-------RHDEII 187
Query: 168 HLFGDSETSPFSIHNLLQAGKAYGLAA--GSWVGPYAMCRSWEALARCQRAETGLGCQSL 225
+F D +PFS+HN ++ L G W GP A S + L C +
Sbjct: 188 DMFMDEPRAPFSLHNFIKVASESPLKVKPGQWFGPNAASLSIKRL-----------CDN- 235
Query: 226 PMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTP----ILLLVPLVLGLEKV 281
+Y +G G VV + ++ + + ++ P IL+L+P+ LG++KV
Sbjct: 236 ---VYESNG-----TGRVKVVISESSNLYDDIITQMFTTLNPVPDAILVLLPVRLGIDKV 287
Query: 282 NPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEA 341
NP Y ++ QS+GI GGKP +S Y G + +YLDPH Q V N +
Sbjct: 288 NPLYHASVLELLALRQSVGIAGGKPSSSFYFFGYKGNDLLYLDPHYPQFVRN-----KTS 342
Query: 342 DTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASK 384
TYH++ + + +D +DPS+ IG +D +D++DF + +K
Sbjct: 343 VYDTYHTNSYQKLSVDDMDPSMMIGILIKDINDYEDFKSSCTK 385
>sp|Q9P373|ATG4_SCHPO Probable cysteine protease atg4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=atg4 PE=3 SV=1
Length = 320
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 144/341 (42%), Gaps = 53/341 (15%)
Query: 48 MRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILI 107
M R ER L + T + IW LG +KI + +F D S I I
Sbjct: 4 MARFLERYLHFAPTNTEPPGTLIWFLGHSYKIEDSQ---------WPEKFLYDSFSLITI 54
Query: 108 SYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEIL 167
+YR G + G +TSD GWGCM+RS+Q L+A L R+ P +++ EIL
Sbjct: 55 TYRSGIE--GLENMTSDTGWGCMIRSTQTLLANCL---RICYP---------EKQLKEIL 100
Query: 168 HLFGDSETSPFSIHNLLQAGKAY-GLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLP 226
LF D ++PFSIH + GK + G W GP C +AR +P
Sbjct: 101 ALFADEPSAPFSIHQFVTMGKTLCDINPGQWFGPTTSC---SCVARLSDQNP-----DVP 152
Query: 227 MAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYI 286
+ +YV R V P+LLL+P LG++ +N Y
Sbjct: 153 LHVYVARNGNAIYRDQLSKVSF------------------PVLLLIPTRLGIDSINESYY 194
Query: 287 PTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTY 346
L F +GI GG+P ++ Y Q + YLDPH + A T+
Sbjct: 195 DQLLQVFEIRSFVGITGGRPRSAHYFYARQNQYFFYLDPHCTHFAHTTTQ---PASEETF 251
Query: 347 HSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAE 387
HS +R + + +DP + GF RD++++ F A A+
Sbjct: 252 HSATLRRVAIQDLDPCMIFGFLIRDEEEWHSFEANQKYFAD 292
>sp|Q6CQ60|ATG4_KLULA Probable cysteine protease ATG4 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=ATG4 PE=3 SV=1
Length = 450
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 110/383 (28%), Positives = 164/383 (42%), Gaps = 67/383 (17%)
Query: 26 LASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEAL 85
L+ + LG E V R T + + + + SRT + + S A + +
Sbjct: 4 LSRISQHLGIVEDVDRDGTVFILGKEYAPLNNKSRTDVETDDS-----------ALESLI 52
Query: 86 GDAAGNNGLAEFNQDFSSRILISYRKGFDPI-----GDSKIT------------------ 122
+ N GL D SR+ +YR F PI G S I
Sbjct: 53 NIVSLNPGLL---SDVHSRVFFTYRTQFTPIRRNENGPSPINFTLFFRDNPINTLENALT 109
Query: 123 ------SDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETS 176
SD+GWGCM+R+ Q L+A A+ +L R +R + D E + ++ F D
Sbjct: 110 DPDSFYSDIGWGCMIRTGQALLANAIQRVKLAREFRINASRIDDNE-LNLIRWFQDDVKY 168
Query: 177 PFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGD 235
P S+HN ++A K G+ G W GP A RS + L E C I S D
Sbjct: 169 PLSLHNFVKAEEKISGMKPGQWFGPSATARSIKTLI-----EGFPLCGIKNCIISTQSAD 223
Query: 236 EDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTF 295
+ D+ +R +F K + +LLL + LG++K+N Y + +
Sbjct: 224 ----------IYEDEVTR---IFHKDRD--ANLLLLFAVRLGVDKINSLYWKDIFKILSS 268
Query: 296 PQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIH 355
P S+GI GGKP +S Y G Q E+ YLDPH+ Q ++ DDLE S H +H
Sbjct: 269 PYSVGIAGGKPSSSLYFFGYQNENLFYLDPHNTQQS-SLMMDDLEFYRSC-HGHKFNKLH 326
Query: 356 LDSIDPSLAIGFYCRDKDDFDDF 378
+ DPS+ +G K+++D F
Sbjct: 327 ISETDPSMLLGMLISGKNEWDQF 349
>sp|A3LQU0|ATG4_PICST Probable cysteine protease ATG4 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=ATG4 PE=3 SV=2
Length = 514
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 153/323 (47%), Gaps = 43/323 (13%)
Query: 101 FSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFD 160
FS +L + + + I T+DVGWGCM+R+SQ L+A F RL L K D
Sbjct: 138 FSKSLLYNLQNFNNFIEKENFTTDVGWGCMIRTSQSLLANT--FVRL-------LDKQSD 188
Query: 161 REYVEILHLFGDSETSPFSIHNLLQAGKAYGLAA--GSWVGPYAMCRSWEALARCQRAET 218
I+ LF D+ +PFS+HN ++ + L G W GP A S + L C
Sbjct: 189 -----IIALFNDTYLAPFSLHNFIRVASSSPLKVKPGEWFGPNAASLSIKRL--CDGYYD 241
Query: 219 GLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGL 278
+++ I V+ + ++ ++ +KG +L+L+P+ LG+
Sbjct: 242 NSTSETILPRINVLISESTDLYDSQIAQLLEPSTE-----TKG------LLVLLPVRLGI 290
Query: 279 EKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDD 338
+ +N Y +L + QS+GI GGKP +S Y G Q+ S IY+DPH Q I D
Sbjct: 291 DSINSYYFSSLLHLLSLEQSVGIAGGKPSSSFYFFGYQDNSLIYMDPHSAQ----IFSSD 346
Query: 339 LEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDF---CARASKLAEESNGAPLF 395
+ D STY++ + + + +DPS+ IG + RD +++F C A+ +
Sbjct: 347 I--DMSTYYATRYQRVDIGKLDPSMLIGVFIRDLTSYENFKKSCLDAANKIVHFHATERS 404
Query: 396 TVTQTHKK-----PVNHSDVLGE 413
TV ++ +K +N SD+ E
Sbjct: 405 TVPESRRKNSEFVNINRSDLKDE 427
>sp|A7TQN1|ATG4_VANPO Probable cysteine protease ATG4 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=ATG4 PE=3 SV=1
Length = 411
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 142/309 (45%), Gaps = 57/309 (18%)
Query: 97 FNQDFSSRILISYRKGFDPIGDSK-----------------------------ITSDVGW 127
F D SRI +YR F PI S +D+GW
Sbjct: 74 FLSDVISRIHFTYRTKFIPIARSDDGPSPLRINFLIGDNPFNAIENAIYNPNCFNTDIGW 133
Query: 128 GCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG 187
GCM+R+ Q L+A A+ LGR +R + + +I+ F D+ PFS+HN ++ G
Sbjct: 134 GCMIRTGQSLLANAIQIAILGREFRVN-DGDVNEQERKIISWFMDTPDEPFSLHNFVKKG 192
Query: 188 -KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVV 246
+ G W GP A RS ++L Q + G+ + ++ + DE
Sbjct: 193 CELSSKKPGEWFGPAATSRSIQSLVE-QFPDCGIDRCIVSVSSADIFKDE---------- 241
Query: 247 CIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKP 306
I+D +F + ++ ILLL+ + LG++KVN Y+ +R S+GI GG+P
Sbjct: 242 -IND------IFKNKR--YSNILLLMGVKLGVDKVNEYYLKDIRKILESRYSVGISGGRP 292
Query: 307 GASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIG 366
+S Y G Q+++ +Y DPH QP +E+ T H+D I++ +DPS+ IG
Sbjct: 293 SSSLYFFGYQDDTLLYFDPHKPQPST------IESLLETCHTDNFDKINISDMDPSMLIG 346
Query: 367 FYCRDKDDF 375
+ +DD+
Sbjct: 347 VLLQGEDDW 355
>sp|Q59UG3|ATG4_CANAL Cysteine protease ATG4 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=ATG4 PE=3 SV=1
Length = 446
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 136/317 (42%), Gaps = 70/317 (22%)
Query: 98 NQDFSSRILISYRKGFDPIGDS----------------------------------KITS 123
N S++ +SYR GF+PI S TS
Sbjct: 80 NDYIESKLWLSYRCGFEPIPKSIDGPQPIQFFPSIIFNRSTIYSNFANLKSLFDKENFTS 139
Query: 124 DVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNL 183
D GWGCM+R+SQ L+A LL K + + EI+ LF D +SPFSIHN
Sbjct: 140 DAGWGCMIRTSQNLLANTLL-------------KLYPKNEPEIVKLFQDDTSSPFSIHNF 186
Query: 184 LQAGKAYGL--AAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERG 241
++ L G W GP A S + LA + + +P +S + D
Sbjct: 187 IRVASLSPLHVKPGEWFGPNAASLSIKRLASELLQDQEIDGIKIPRVF--ISENSD---- 240
Query: 242 GAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGI 301
DD R VF+K + +L+L P+ LG++KVN Y ++ S GI
Sbjct: 241 -----LFDDEIR--DVFAKEKN--ASVLILFPIRLGIDKVNSYYYNSIFHLLASKYSCGI 291
Query: 302 VGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDP 361
GGKP +S Y +G ++ IY DPH Q V + + +YH+ +++ +DP
Sbjct: 292 AGGKPSSSFYFLGYEDTDLIYFDPHLPQVV------ETPINMDSYHTTNYNRLNISLLDP 345
Query: 362 SLAIGFYCRDKDDFDDF 378
S+ IG + D++ DF
Sbjct: 346 SMMIGILVTNIDEYIDF 362
>sp|P0CQ10|ATG4_CRYNJ Cysteine protease ATG4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=ATG4 PE=3
SV=1
Length = 1193
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 110/240 (45%), Gaps = 28/240 (11%)
Query: 121 ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDRE---------------YVE 165
+TSD GWGCMLR+ Q L+ AL+ LGR WR P E Y +
Sbjct: 562 LTSDAGWGCMLRTGQSLLVNALIHIHLGRDWRVPSTPASFSEATTTQEIAALKDYAKYAQ 621
Query: 166 ILHLFGD--SETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQ 223
+L F D S PFS+H + GK G G W GP + + LA A G+
Sbjct: 622 MLSWFLDDPSPLCPFSVHRMALIGKELGKEVGEWFGPSTAAGALKTLANS-FAPCGVAVA 680
Query: 224 SLPMAI------YVVSG-DEDGERGGAPVVCIDDASRHCSVFSKGQADW--TPILLLVPL 274
+ +I Y S D +P R +K + W +L+LV +
Sbjct: 681 TATDSIIYKSDVYTASNLPSDDWNSISPTFNSSKKKRRGDNEAK-EEKWGKRAVLILVGV 739
Query: 275 VLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINI 334
LGL+ VNP Y +++ FTFPQS+GI GG+P +S Y VG Q YLDPH +P I +
Sbjct: 740 RLGLDGVNPIYYDSIKALFTFPQSVGIAGGRPSSSYYFVGSQANHLFYLDPHLTRPAIPL 799
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 5/53 (9%)
Query: 345 TYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTV 397
TYH + I+ + L +DPS+ +GF C+D+DDF+DF R ++L ++ +FTV
Sbjct: 952 TYHCEKIKKMPLSGLDPSMLLGFVCKDEDDFEDFVERVAQLPKK-----IFTV 999
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,521,858
Number of Sequences: 539616
Number of extensions: 7693184
Number of successful extensions: 15316
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15053
Number of HSP's gapped (non-prelim): 112
length of query: 443
length of database: 191,569,459
effective HSP length: 121
effective length of query: 322
effective length of database: 126,275,923
effective search space: 40660847206
effective search space used: 40660847206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)